Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 193 of 402
Found at i:20514091 original size:159 final size:158
Alignment explanation
Indices: 20513740--20514174 Score: 475
Period size: 159 Copynumber: 2.8 Consensus size: 158
20513730 TTCGTATGCG
* * *
20513740 TAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTACGGGCACTCAGCC-
1 TAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * ** *
20513804 GTCCGAAGAGGCAGAATGCGCAAGCCGGGGAT-GGCCCGGTCCCCC-CTGTGTGCTGTCAATCCT
65 GT-CGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTACCAATCCC
* * *
20513867 ACTACCATAACCCTCAATCTGATCTGATCT
129 ACTACCACAACCCTCAATCTGAACTGAGCT
* * *
20513897 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCG
1 TAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * **
20513962 GTCGGATAGCCATAATGCGCAAGCCGAGGATCGCCCCGGTCCCCCTCTGCGTGCTACCGGTCCCA
65 GTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTACCAATCCCA
* * *
20514027 CTGCCACAACCCTCAGTCT-AACTGGGGCT
130 CTACCACAACCCTCAATCTGAACT-GAGCT
* * * * **
20514056 TAGACATGGAATGGACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTAGGCGCTCAGCCG
1 TAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
** * * *
20514121 ACCAAAGAGGCAGAATACGCAAGTCGAGGATCGGCCCGGT-CCCCTCTGCGTGCT
65 GTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCT
20514175 GCCGATCCTG
Statistics
Matches: 229, Mismatches: 43, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
156 1 0.00
157 80 0.35
158 31 0.14
159 116 0.51
160 1 0.00
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.18
Consensus pattern (158 bp):
TAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
TCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTACCAATCCCAC
TACCACAACCCTCAATCTGAACTGAGCT
Found at i:20514241 original size:26 final size:26
Alignment explanation
Indices: 20514212--20514264 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20514202 CCAGTCCGAT
20514212 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
20514238 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
20514264 C
1 C
20514265 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:20514957 original size:26 final size:26
Alignment explanation
Indices: 20514919--20514971 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20514909 GGCTCAAAAT
*
20514919 CTTAGACTAGGAATGGACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20514945 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
20514971 C
1 C
20514972 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20515302 original size:159 final size:157
Alignment explanation
Indices: 20514944--20515566 Score: 476
Period size: 159 Copynumber: 3.9 Consensus size: 157
20514934 GACTCCGTAT
* * * *
20514944 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * *
20515009 TTGGCCAGAGAGGCAGAATGCGTAAGTCGGGGATCAGCTCGGTCCCCC-CTACGTGCTGTCGATC
66 CCGGCGA-AGAGGCAGAATGCGCAAGTCGGGGATCACCT-GGTCCCCCTCTGCGTGCTGCCGATC
** *
20515073 TTGCTGCC-TCAACCCTCGGTCTGATCT-GA
129 CCGCTGCCAT-AACCCTCGGTCTGA-CTGGG
* * * * * * *
20515102 TCTTAGAC-TGGGAATGAACTTCGTATGCATAAG-TCAGCCCACGAAAGGAGCGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCT-AACCCACGAAACGAGCGTGCGGGCGCTC
*
20515165 AGCCGGTCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCTGGTCCCCCTCTGCGTGCTGCCTG
64 AGCCGG-CGAAGAGGCAGAATGCGCAAGTCGGGGATC-ACCTGGTCCCCCTCTGCGTGCTGCC-G
*
20515230 -TCCCGCTGCCATAACCCTCGGTCTGGCTGGG
126 ATCCCGCTGCCATAACCCTCGGTCTGACTGGG
* * * * * *
20515261 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCTAACCCACGGAAATGAGTGCGCGAGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCAC-GAAACGAGCGTGCGGGCGCTCA
** * * * * *
20515326 GCCAACTGGAGAGGCAGAATGCGCAAG-CTGGGGATCAGTCTGAT-CCCCTCGGTGTGCTGCCGA
65 GCCGGC-GAAGAGGCAGAATGCGCAAGTC-GGGGATCA-CCTGGTCCCCCTCTGCGTGCTGCCGA
* * * * *
20515389 TCCCGTTGCCACAACCCTTGGTCCGACTGTG
127 TCCCGCTGCCATAACCCTCGGTCTGACTGGG
* * * * * *
20515420 GCTTAGACATGGAATGAACTCCCTATGACTAAGAC-AACCCATGAAACGGGCCTACAGGGTGCTC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAG-CTAACCCACGAAACGAGCGTGC-GGGCGCTC
* * * * * * * **
20515484 AACTGGCTGGAGAGGTAGAATACGCAA-CCTGGGGATCGACCTGGTCCCCC-CTACGTGCTTTCG
64 AGCCGGC-GAAGAGGCAGAATGCGCAAGTC-GGGGATC-ACCTGGTCCCCCTCTGCGTGCTGCCG
* * *
20515547 ATCCTGCTGTCGTAACCCTC
126 ATCCCGCTGCCATAACCCTC
20515567 AGTCCGGTCT
Statistics
Matches: 367, Mismatches: 78, Indels: 39
0.76 0.16 0.08
Matches are distributed among these distances:
157 1 0.00
158 98 0.27
159 210 0.57
160 58 0.16
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCGAAGAGGCAGAATGCGCAAGTCGGGGATCACCTGGTCCCCCTCTGCGTGCTGCCGATCCC
GCTGCCATAACCCTCGGTCTGACTGGG
Found at i:20515985 original size:26 final size:26
Alignment explanation
Indices: 20515947--20515999 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
20515937 TCGATCCGAT
20515947 CTTAGACTAGGAATG-AACTCTGTATG
1 CTTAGACTAGGAA-GAAACTCTGTATG
20515973 CTTAGAC-ATGGAAGAAACTCTGTATG
1 CTTAGACTA-GGAAGAAACTCTGTATG
20515999 C
1 C
20516000 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAAGAAACTCTGTATG
Found at i:20516172 original size:26 final size:26
Alignment explanation
Indices: 20516143--20516195 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20516133 CCGATCCGAT
20516143 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
20516169 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
20516195 C
1 C
20516196 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20516279 original size:196 final size:193
Alignment explanation
Indices: 20515776--20516292 Score: 581
Period size: 196 Copynumber: 2.6 Consensus size: 193
20515766 TCCGACTAGG
* * *
20515776 GCTTAGACATGGAATGAACTACGTATGCCTTAGCCAACCAACGAAATGAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGTGCTCAG
* * ** * * * **
20515841 TCGACTGGAGAGGCAGAATACGTAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTTGATCC
66 TAGGCCAGAGAGGCAGAATGC-TAAGTAGGGGATCG--CCGATCCCCCCTGCGTGCTGTCAATCC
* * * * *
20515906 TGCTACTGGTTCTACTGCCACAACCCTCGGTTCGATCCGATCTTAGACTAGGAATGAACTCTGTA
128 TACTACTGGTCCTACTACCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTA
20515971 T
193 T
* * * * * *
20515972 GCTTAGACATGGAA-GAAACTCTGTATGCCTAAGCCAACCCACAAAACGAGTGTACGGGTGCTCA
1 GCTTAGACATGGAATG-AACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGTGCTCA
** * * *
20516036 ACAGGCCAGAGAGGCAAAAAATGC-AAGCCA-GGGATCGGCCTGATCCCCCCTGTGTGCTGTCAA
65 GTAGGCCAGAGAGGC--AGAATGCTAAG-TAGGGGATC-GCC-GATCCCCCCTGCGTGCTGTCAA
** **
20516099 TCCTACTACTGGTCCTGTTACCGTAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCC
125 TCCTACTACTGGTCCTACTACCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCC
20516164 GTAT
190 GTAT
*
20516168 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGTGCTCAG
* * *
20516233 TTGGCCAGAGAGGCAGAATGCATAAGTAGGGGATCAGCTCGATCCCCCCTACGTACTGTC
66 TAGGCCAGAGAGGCAGAATGC-TAAGTAGGGGATC-GC-CGATCCCCCCTGCGTGCTGTC
20516293 GATCTTGCTG
Statistics
Matches: 263, Mismatches: 47, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
194 6 0.02
195 4 0.02
196 245 0.93
197 3 0.01
198 5 0.02
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.22
Consensus pattern (193 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGTGCTCAG
TAGGCCAGAGAGGCAGAATGCTAAGTAGGGGATCGCCGATCCCCCCTGCGTGCTGTCAATCCTAC
TACTGGTCCTACTACCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:20516526 original size:159 final size:158
Alignment explanation
Indices: 20516168--20516688 Score: 369
Period size: 158 Copynumber: 3.3 Consensus size: 158
20516158 AACTCCGTAT
* * * * * * **
20516168 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAAGGAGCGCGCGAGCACTCAG
**** * ** * ** * *
20516233 TTGGC-CAGAGAGGCAGAATGCATAAG-TAGGGGATCAG-CTCGATCCCCCCTACGTACTGTCGA
66 CCAACTGA-AGAGGCAGAATGCGCAAGCT-GGGGATCAGCCT-GATCCCCTCGGCGTGCTGCCGA
** * * *
20516295 TCTTGCTGCCTCAACCCTCGATCCGATCT-GA
128 TCCCGCTGCCACAACCCTCGGTCCGA-CTGGG
* * * * * * * * * *
20516326 TCTTAGAC-TGGGAATGAACTTCATATGCATAAG-TCAGCCCACGAAAGGAGCGTGTGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCT-AACCCACGAAAGGAGCGCGCGAGCACTC
** * * * **
20516389 AGCC-GGTCGAAGAGGCATAATGCGCAAG-TCGGGGATCGGCCTGGTCCCCCTTTGCGTGCTGCC
64 AGCCAACT-GAAGAGGCAGAATGCGCAAGCT-GGGGATCAGCCTGAT-CCCCTCGGCGTGCTGCC
* * *
20516452 TG-TCCCGCTGCCATAACCCTCGGTCTGGCTGGG
126 -GATCCCGCTGCCACAACCCTCGGTCCGACTGGG
* * *
20516485 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAATGAGTGCGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAAGGAGCGCGCGAGCACTCAG
* * *
20516550 CCAACTGGAGAGGCAGAATGCGCAAGCTGGGGATCAGTCTGATCCCCTCGGTGTGCTGCCGATCC
66 CCAACTGAAGAGGCAGAATGCGCAAGCTGGGGATCAGCCTGATCCCCTCGGCGTGCTGCCGATCC
* * *
20516615 CGTTGCCACAACCCTTGGTCCGACTGTG
131 CGCTGCCACAACCCTCGGTCCGACTGGG
* *
20516643 GCTTAGACATGGAATGAACTCCCTATGACTAAGAC-AACCCATGAAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAG-CTAACCCACGAAA
20516689 CGGGCCTACA
Statistics
Matches: 283, Mismatches: 66, Indels: 28
0.75 0.18 0.07
Matches are distributed among these distances:
157 3 0.01
158 159 0.56
159 116 0.41
160 5 0.02
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAAGGAGCGCGCGAGCACTCAG
CCAACTGAAGAGGCAGAATGCGCAAGCTGGGGATCAGCCTGATCCCCTCGGCGTGCTGCCGATCC
CGCTGCCACAACCCTCGGTCCGACTGGG
Found at i:20516663 original size:158 final size:159
Alignment explanation
Indices: 20516399--20516688 Score: 381
Period size: 158 Copynumber: 1.8 Consensus size: 159
20516389 AGCCGGTCGA
* * * **
20516399 AGAGGCATAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCTTTGCGTGCTGCCTGTCCCGCTGCC
1 AGAGGCAGAATGCGCAAGTCGGGGATCAGCCTGATCCCCCTCGGCGTGCTGCCTGTCCCGCTGCC
* * * * *
20516464 ATAACCCTCGGTCTGGCTGGGGCTTAGGCATGGAATGAACTCCCTATGCCTAAG-CTAACCCACG
66 ACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGAC-AACCCACG
20516528 AAATGAGTGCGCGAGCACTCAGCCAACTGG
130 AAATGAGTGCGCGAGCACTCAGCCAACTGG
* * *
20516558 AGAGGCAGAATGCGCAAG-CTGGGGATCAGTCTGAT-CCCCTCGGTGTGCTGCC-GATCCCGTTG
1 AGAGGCAGAATGCGCAAGTC-GGGGATCAGCCTGATCCCCCTCGGCGTGCTGCCTG-TCCCGCTG
* * *
20516620 CCACAACCCTTGGTCCGACTGTGGCTTAGACATGGAATGAACTCCCTATGACTAAGACAACCCAT
64 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGACAACCCAC
20516685 GAAA
129 GAAA
20516689 CGGGCCTACA
Statistics
Matches: 112, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
157 1 0.01
158 81 0.72
159 30 0.27
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
AGAGGCAGAATGCGCAAGTCGGGGATCAGCCTGATCCCCCTCGGCGTGCTGCCTGTCCCGCTGCC
ACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGACAACCCACGA
AATGAGTGCGCGAGCACTCAGCCAACTGG
Found at i:20517207 original size:26 final size:26
Alignment explanation
Indices: 20517169--20517221 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20517159 CCGATCCGAT
*
20517169 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAAGGAACTCTGTATG
20517195 CTTAGACAT-GGAAGGAACTCTGTATG
1 CTTAGAC-TGGGAAGGAACTCTGTATG
20517221 C
1 C
20517222 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCTGTATG
Found at i:20517350 original size:196 final size:195
Alignment explanation
Indices: 20516998--20517520 Score: 676
Period size: 196 Copynumber: 2.7 Consensus size: 195
20516988 TCCGACTGGG
* * **
20516998 GCTTAGACATGGAATGAACTACGTATGCCTTAGCCAACCAACGAAACGAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACT-CGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCA-
* ** * * *
20517063 TCGACTGGAGAGGCAGAATACGT--AAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTTGAT
64 ACGACCAGAGAGGCAGAATA-GTGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGAT
* * * * * *
20517126 CCTGCTGCTGGTTCTACTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTG
128 CCTACTACTGGTCCTACTACCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCG
20517191 TAT
193 TAT
* * *
20517194 GCTTAGACATGGAAGGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGTGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTC-GTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAA
* * *
20517259 CAGGCCAGAGAGGCAGAA-AGTGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
65 C-GACCAGAGAGGCAGAATAGTGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
** *
20517323 CTACTACTGGTCCTGTTACCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGT
129 CTACTACTGGTCCTACTACCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGT
20517388 AT
194 AT
*
20517390 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACT-CGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAA
* * ** *
20517455 CCGACCAGAGAGGTAGAATAG-GCAAGCCGGGGATCAACTTGATCCCCCCTTCGTGCTGTCGATC
65 -CGACCAGAGAGGCAGAATAGTGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
20517519 CT
129 CT
20517521 GCTGCCGCAA
Statistics
Matches: 283, Mismatches: 37, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
194 2 0.01
195 3 0.01
196 274 0.97
197 4 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.20
Consensus pattern (195 bp):
GCTTAGACATGGAATGAACTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAAC
GACCAGAGAGGCAGAATAGTGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
ACTACTGGTCCTACTACCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:20517394 original size:26 final size:26
Alignment explanation
Indices: 20517365--20517417 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20517355 CCGATCCGAT
20517365 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
20517391 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
20517417 C
1 C
20517418 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20517647 original size:158 final size:159
Alignment explanation
Indices: 20517390--20517754 Score: 423
Period size: 158 Copynumber: 2.3 Consensus size: 159
20517380 AACTCCGTAT
* * **
20517390 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAA
* * * **
20517455 CCGACCAGAGAGGTAGAATAGGCAAGCCGGGGATCAACTTGATCCCCC-CT-TCGTGCTGTCGAT
66 CCGACCAGAGAGGCAGAATAGGCAAGCCGAGGATCAACCTGATCCCCCTCTGT-GTGCTACCGAT
* * * * *
20517518 CCTGCTGCCGCAACCCTCGGTCCGGTTTGA
130 CCCGCTACCACAACCCTCGGTCCGGCTAGA
* * * * *
20517548 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCA
* * * ** * *
20517612 GCCGGCCAGAGAGGCATAAT-GCGCAAGCCGAGGATCGGCCTGGTCCCCCTCTGTGTGCTACCGG
65 ACCGACCAGAGAGGCAGAATAG-GCAAGCCGAGGATCAACCTGATCCCCCTCTGTGTGCTACCGA
*
20517676 TCCCGCTACCACAACCCTCGGTCCGGCTAGG
129 TCCCGCTACCACAACCCTCGGTCCGGCTAGA
*
20517707 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
20517755 GGCGTGCTGG
Statistics
Matches: 171, Mismatches: 31, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
157 2 0.01
158 91 0.53
159 76 0.44
160 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAA
CCGACCAGAGAGGCAGAATAGGCAAGCCGAGGATCAACCTGATCCCCCTCTGTGTGCTACCGATC
CCGCTACCACAACCCTCGGTCCGGCTAGA
Found at i:20517738 original size:159 final size:157
Alignment explanation
Indices: 20517390--20517814 Score: 455
Period size: 159 Copynumber: 2.7 Consensus size: 157
20517380 AACTCCGTAT
* * * * *
20517390 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-CCTGAG
* ** * * **
20517455 CCGACCAGAGAGGTAGAATAG-GCAAGCCGGGGATCAACTTGATCCCCCCTTCGTGCTGTCGATC
65 CCGGCCAGAGAGGTAGAAT-GCGCAAGCCGGGGATCGGCCTGGTCCCCCCTTCGTGCTACCGATC
* * * * *
20517519 CTGCTGCCGCAACCCTCGGTCCGGTTTGA
129 CCGCTACCACAACCCTCGGTCCGGCTAGA
* * * *
20517548 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-CTGA
* * * *
20517612 GCCGGCCAGAGAGGCATAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCTCTGT-GTGCTACCGG
64 GCCGGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCC-CT-TCGTGCTACCGA
*
20517676 TCCCGCTACCACAACCCTCGGTCCGGCTAGG
127 TCCCGCTACCACAACCCTCGGTCCGGCTAGA
* * *
20517707 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCTGGTGCTTG-
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GG-GCCTGA
* * *
20517771 GCCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATTGGCC-GGTC
64 GCCGGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGGTC
20517815 GGAGAGGTAG
Statistics
Matches: 220, Mismatches: 39, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
157 2 0.01
158 95 0.43
159 115 0.52
160 6 0.03
161 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCCTGAGC
CGGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTTCGTGCTACCGATCCC
GCTACCACAACCCTCGGTCCGGCTAGA
Found at i:20521784 original size:26 final size:26
Alignment explanation
Indices: 20521748--20521800 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20521738 CCTGTCTGAT
20521748 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20521774 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20521800 C
1 C
20521801 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20522865 original size:171 final size:169
Alignment explanation
Indices: 20522620--20522952 Score: 447
Period size: 171 Copynumber: 2.0 Consensus size: 169
20522610 TCGATCCGAT
** * * *
20522620 CTTAGACTGGGAATGAACTCCGTATGCATAAGTGAACCCATGAAACAAGCGTGCGGGCTCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAAC
* *
20522685 CGGCCGGAGAGGCATAATGCGCAAGCCAG-GGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATC
66 CGACCGGAGAGGCAGAATGCGCAAGCC-GCGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATC
20522749 CCGCTG-TCGGTCCTGCTACCACAACCCTCGATCCAACTGGGG
129 CCG-TGCT-GGTCCTGCTACCACAACCCTCGATCCAACTGGGG
* * * *
20522791 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAA
* *
20522855 CCGACCGGAGAGGCAGAATGCGCAAGCCGCGGATTGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGCGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * **
20522920 TGTGCTGGTCCTGCTGCCGTAACCCTCGATCCA
130 CGTGCTGGTCCTGCTACCACAACCCTCGATCCA
20522953 GTTCAATCTT
Statistics
Matches: 142, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
169 26 0.18
170 20 0.14
171 95 0.67
172 1 0.01
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.19
Consensus pattern (169 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAAC
CGACCGGAGAGGCAGAATGCGCAAGCCGCGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCC
GTGCTGGTCCTGCTACCACAACCCTCGATCCAACTGGGG
Found at i:20523011 original size:26 final size:26
Alignment explanation
Indices: 20522960--20523012 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20522950 CCAGTTCAAT
***
20522960 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20522986 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
20523012 C
1 C
20523013 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20523793 original size:159 final size:158
Alignment explanation
Indices: 20523537--20524114 Score: 493
Period size: 159 Copynumber: 3.6 Consensus size: 158
20523527 AACTCCGTAC
* ** * * * * * * *
20523537 GCTTAGACATGGAATGAACTCTGTATGCCTAAGTCAAGCCATGAAACGAGTGTGAGGGCGCTAAG
1 GCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
* * * * * *
20523602 CCGGCCGGAGAGGCATAATGCGCGAGTCGGGGATCAGGCCGATCCCCCTCTACATGCTGCCGGTC
66 TCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GGCCGATCCCCCTCTACATGCTGTCGGTC
** *
20523667 CTGCAGCCACAACCCTCAGTCCAGTTGGG
130 CTGCAGCCACAACCCTTGGTCCGGTTGGG
** * *
20523696 GCTTAGACATGGAATGAAATCCCTACACCTAAGCCAACCCACGAAATGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
* * * *
20523761 TCAGCCGGAGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGATCCACCC-CTACGTGCTGTCGAT
66 TCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CCGATCC-CCCTCTACATGCTGTCGGT
** ** *
20523825 CCTGCTA-CGGCAACCCTTGGTTTGGTCT-GA
129 CCTGC-AGCCACAACCCTTGGTCCGGT-TGGG
* * * * * * * * * *
20523855 TCTGAGAC-TGGGAATGAACA-CCGTATGCCTAAGTCAACCCATAAAATGAGTGTGCGGCCGTTG
1 GCTTAGACAT-GGAATGAA-ATCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTC
* * ** * * * *
20523918 AG-CTAGCCGAAGAGGCATAATGCGCAAGCCGAAGATCGGCTCGGTCTCCCTCTGCATGCTATCG
64 AGTC-AGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC-CGATCCCCCTCTACATGCTGTCG
* * *
20523982 GTCCCGCTGCCACAACCCTTGGTCCGGTAGGG
127 GTCCTGCAGCCACAACCCTTGGTCCGGTTGGG
* * * * *
20524014 GCTTAGACATGGAATGAACTTCCTATGCCCAAGCCAACCCATGAAATGGGCGTACGGGGGCTCAG
1 GCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
* *
20524079 TCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCG
66 TCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
20524115 ACCAGGTCCC
Statistics
Matches: 318, Mismatches: 87, Indels: 28
0.73 0.20 0.06
Matches are distributed among these distances:
158 8 0.03
159 302 0.95
160 8 0.03
ACGTcount: A:0.24, C:0.28, G:0.30, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
TCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGATCCCCCTCTACATGCTGTCGGTCC
TGCAGCCACAACCCTTGGTCCGGTTGGG
Found at i:20524213 original size:26 final size:26
Alignment explanation
Indices: 20524184--20524236 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20524174 CCGGTCCGAT
20524184 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
20524210 CTTAGGCATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
20524236 C
1 C
20524237 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20524614 original size:672 final size:676
Alignment explanation
Indices: 20523314--20524641 Score: 1407
Period size: 672 Copynumber: 2.0 Consensus size: 676
20523304 CCAGTCTTGT
* *
20523314 TGCCACAACCCTCGATCCGGCTGTGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCC
* * * *
20523379 ACGAAACGAGTGTGCGGGAGCTCAACCGGTCGGTGAAATAGAATGCGCAAGCCGGGGATCAACCC
66 ACGAAACGAGCGTACGGGAGCTCAACCGGCCGGAGAAATAGAATGCGCAAGCCGGGGATCAACCC
* * ** * *
20523444 AGTTCCCCCCTGCGTGCTGTCGTAGCCTGCTACTAGTCCTACTATCGCAACCCTCGGTCCGGTCT
131 AGGTCCCCCCTACGTGCTACCGTAGCCTGCTACTAGTCCTACTATCGCAACCCTCAGTCCGGTCC
* * *
20523509 GATCTTATACTGGGAATGAACTCCGTACGCTTAGACATGGAATGAACTCTGTATGCCTAAGTCAA
196 GATCTTAGACTGGGAATGAACTCCGTACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
20523574 GCCATGAAACGAGTGTGAGGGCGCTAAGCCGGCCGGAGAGGCATAATGCGCGAGTCGGGGATCAG
261 CCCACGAAACGAGCGTGAGGGCGCTAAGCCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGACCAG
* ** *
20523639 GCCGATCCCCCTCTACATGCTGCCGGTCCTGCAGCCACAACCCTCAGTCCAGTTGGGGCTTAGAC
326 GCCGATCCCCCTCTACATCCTGCCAATCCTGCAGCCACAACCCTCAGTCCAGTTGGAGCTTAGAC
*** * * *
20523704 ATGGAATGAAATCCCTACACCTAAGCCAACCCACGAAATGGGCATGCGGGCGCTCAGTCAGCCGG
391 ATGGAATGAAATCCCTACACCTAAGCCAACCCACGAAACCAGCATGCGGGCGCTAAGCCAGCCGA
* * * * *
20523769 AGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGATCCACCCCTACGTGCTGTCGATCCTGCTACG
456 AGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCACCCCTACATGCTGTCGATCCCGCTACC
* * * ** * * * *
20523834 GCAACCCTTGGTTTGGTCTGATCTGAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCATAA
521 ACAACCCTCGATCCGGTCTGAGCTGAGACTGGCAATGAACACCCTATGCCTAAGCCAACCCATAA
* * * * * * *
20523899 AATGAGTGTGCGGCCGTTGAGCTAGCCGAAGAGGCATAATGCGCAAGCCGAA-GATCGGCTCGGT
586 AACGAGCGTGCGGCCGTTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCC-AAGGATCAGCCCGGT
20523963 -CTCCCTCTGCATGCTATCGGTCCCGC
650 CCTCCCTCTGCATGCTATCGGTCCCGC
* *
20523989 TGCCACAACCCTTGGTCCGG-TAGGGGCTTAGACATGGAATGAACTTCC-TATGCCCAAGCCAAC
1 TGCCACAACCCTCGATCCGGCT-GGGGCTTAGACATGGAATGAAC-TCCGTATGCCCAAGCCAAC
* * * * ** ** *
20524052 CCATGAAATGGGCGTACGGGGGCTCAGTCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGA-
64 CCACGAAACGAGCGTACGGGAGCTCAACCGGCCGGAGAAATAGAATGCGCAAGCCGGGGATCAAC
* * * *
20524116 CCAGGT-CCCCCTACGTGCTACCG-ATCCTGCTGCTGGTCCTACT-GCTGCAACCCTCAGTCCGG
129 CCAGGTCCCCCCTACGTGCTACCGTAGCCTGCTACTAGTCCTACTATC-GCAACCCTCAGTCCGG
* *
20524178 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCATGGAATGAACTCCGTATGCCTAAGC
193 TCCGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * * *
20524243 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCAGAGAGGCAGAATGCGTAAGTCGGGGAC
258 CAACCCACGAAACGAGCGTGAGGGCGCTAAGCCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGAC
* * * * * * * ** ** *
20524308 C-GATCTGGTCCCCCT-TGCGTCCTGTCAATCCTGCTA-TCACAATGCTC-GATCTGGTCT-GAT
323 CAG-GCCGATCCCCCTCTACATCCTGCCAATCCTGC-AGCCACAACCCTCAG-TCCAGT-TGGAG
* * ** * * * * * *
20524368 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAGCCAGCGTGTGGGTGCTAAG
384 CTTAGACAT-GGAATGAAATCCCTACACCTAAGCCAACCCACGAAACCAGCATGCGGGCGCTAAG
* * * *
20524432 CCAGCCGAAGAGGCATAATGCGCAAG-TCGGGGATCGACCCGATCC-CCCTCTGCATGCTGTTGG
448 CCAGCCGAAGAGGCAGAATGCGCAAGCT-GGGGATCGACCCGATCCACCC-CTACATGCTGTCGA
* * * *
20524495 TCCCGCTGCCACAACCCCTCGATCCGGT-TGGGGCTTAGACAT-GCAATGAACTCCCTATGCCTA
511 TCCCGCTACCACAA-CCCTCGATCCGGTCT-GAGCTGAGAC-TGGCAATGAACACCCTATGCCTA
* * * * *
20524558 AGCCAACCCATGAAACGGGCGTGTGGGCGTTCAGCCAGTCGTAA-AGGCAGAATGCGCAAGCCAA
573 AGCCAACCCATAAAACGAGCGTGCGGCCGTTCAGCCAGCCG-AAGAGGCAGAATGCGCAAGCCAA
20524622 GGATCAGCCCGGTCCTCCCT
637 GGATCAGCCCGGTCCTCCCT
20524642 GCGTGCTGTC
Statistics
Matches: 528, Mismatches: 109, Indels: 34
0.79 0.16 0.05
Matches are distributed among these distances:
670 6 0.01
671 137 0.26
672 249 0.47
673 23 0.04
674 6 0.01
675 104 0.20
676 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (676 bp):
TGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCC
ACGAAACGAGCGTACGGGAGCTCAACCGGCCGGAGAAATAGAATGCGCAAGCCGGGGATCAACCC
AGGTCCCCCCTACGTGCTACCGTAGCCTGCTACTAGTCCTACTATCGCAACCCTCAGTCCGGTCC
GATCTTAGACTGGGAATGAACTCCGTACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAACGAGCGTGAGGGCGCTAAGCCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGACCAG
GCCGATCCCCCTCTACATCCTGCCAATCCTGCAGCCACAACCCTCAGTCCAGTTGGAGCTTAGAC
ATGGAATGAAATCCCTACACCTAAGCCAACCCACGAAACCAGCATGCGGGCGCTAAGCCAGCCGA
AGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCACCCCTACATGCTGTCGATCCCGCTACC
ACAACCCTCGATCCGGTCTGAGCTGAGACTGGCAATGAACACCCTATGCCTAAGCCAACCCATAA
AACGAGCGTGCGGCCGTTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGGTC
CTCCCTCTGCATGCTATCGGTCCCGC
Found at i:20526169 original size:26 final size:26
Alignment explanation
Indices: 20526118--20526170 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20526108 CCGGTTCGAT
*
20526118 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20526144 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20526170 C
1 C
20526171 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20526862 original size:26 final size:26
Alignment explanation
Indices: 20526826--20526878 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20526816 CCGATCCGAT
*
20526826 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACACTGTATG
*
20526852 CTTAGACTGGGGATGAACACTGTATG
1 CTTAGACTGGGAATGAACACTGTATG
20526878 C
1 C
20526879 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACTGTATG
Found at i:20527041 original size:185 final size:182
Alignment explanation
Indices: 20526668--20527221 Score: 630
Period size: 185 Copynumber: 3.0 Consensus size: 182
20526658 TCCGGCTGGG
* ** * * * * *
20526668 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-GGATGTGCGGGCTCTCA
1 GCTTAGACATGGAATGAACACTGTATGCCTAAGCGAAACCATGAAACAAG-CGTGCGGGCCCTCA
** ** * * **
20526732 GTCGGCCGAAGAGGCAGAATGCGTAATTCAGGGATCGGCCCGATCCCCCTACGTGCTACCGATCC
65 ACCGATCGAAGAGGCAGAATGCGCAATT-GGGGATCGGCCCGATCCCCCTACGTGCTGTCGATCC
* * *
20526797 TACTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCTGTAT
129 TACTGCCGCAACCCTTGATCCGATCTGATCTTAGATTGGGAATGAACTCTGTAT
*
20526851 GCTTAGAC-TGGGGATGAACACTGTATGCCTAAGTC-AAACCATGAAACAAGCGTGCGGGCCCTC
1 GCTTAGACAT-GGAATGAACACTGTATGCCTAAG-CGAAACCATGAAACAAGCGTGCGGGCCCTC
*
20526914 AACCGATCGAAGAGGCAGATTGCGCAAGTTGGGGATCGGCCC-AGTCCCCCCTTACGTGCTGTCG
64 AACCGATCGAAGAGGCAGAATGCGCAA-TTGGGGATCGGCCCGA-T-CCCCC-TACGTGCTGTCG
* * * * ** *
20526978 ATCCTGCTTCTGCAACCCTTAATTTGATCTGATCTTAGATTGGGAATGAACTCCGTAT
125 ATCCTACTGCCGCAACCCTTGATCCGATCTGATCTTAGATTGGGAATGAACTCTGTAT
* * * * *
20527036 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCGAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACACTGTATGCCTAAGCGAAACCATGAAACAAGCGTGCGGGCCCTCAA
* * * * * *
20527101 CCGATCGGAGAGGCAGAATGCGCAAACTGGGGATTGGCCCGATGGCCCCTGCGTCCTGTCGATCC
66 CCGATCGAAGAGGCAGAATGCGC-AATTGGGGATCGGCCCGAT-CCCCCTACGTGCTGTCGATCC
*
20527166 TACTGCCGCAACCCTTGGTCCGATCTGATCTTAGATTGGGAATGAACTCTGTAT
129 TACTGCCGCAACCCTTGATCCGATCTGATCTTAGATTGGGAATGAACTCTGTAT
20527220 GC
1 GC
20527222 CTAAATCAAC
Statistics
Matches: 311, Mismatches: 49, Indels: 21
0.82 0.13 0.06
Matches are distributed among these distances:
182 2 0.01
183 82 0.26
184 72 0.23
185 151 0.49
186 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (182 bp):
GCTTAGACATGGAATGAACACTGTATGCCTAAGCGAAACCATGAAACAAGCGTGCGGGCCCTCAA
CCGATCGAAGAGGCAGAATGCGCAATTGGGGATCGGCCCGATCCCCCTACGTGCTGTCGATCCTA
CTGCCGCAACCCTTGATCCGATCTGATCTTAGATTGGGAATGAACTCTGTAT
Found at i:20527540 original size:26 final size:26
Alignment explanation
Indices: 20527511--20527563 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20527501 CCGATCCGAT
*
20527511 CTTAGATTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* * *
20527537 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
20527563 C
1 C
20527564 ATAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:20529137 original size:26 final size:26
Alignment explanation
Indices: 20529099--20529151 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20529089 GGCTCAAACT
20529099 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20529125 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
20529151 C
1 C
20529152 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20530453 original size:158 final size:159
Alignment explanation
Indices: 20530201--20530511 Score: 385
Period size: 158 Copynumber: 2.0 Consensus size: 159
20530191 ACTCCATATG
** *
20530201 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAACGTGCCGACGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAACGTGCCGACGCTCAGC
* * * * * *
20530266 CGGTCAGAGAGGTAGAATGTGTAAGCCGGGAACCGACCCGATCCCCC-CTACA-TGCTGTCGATC
66 CAGCCAGAGAGGCAGAATGCGCAAGCCGGGAACCGACCCGATCCCCCTCTA-AGGGCTGTCGATC
*
20530329 CTGCTGCTACAACCCTCGGTCCGGTCCGAT
130 CTGCTGCCACAACCCTCGGTCCGGTCCGAT
* * * ** * *
20530359 CTTAGAC-TAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGTTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAACGTGCCGACGCTCAG
* * * * *
20530423 CCAGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTAAGGGCTGTCGGTC
65 CCAGCCAGAGAGGCAGAATGCGCAAGCCGGGAACCGACCCGATCCCCCTCTAAGGGCTGTCGATC
20530488 CTGCTGCCACAACCCTCGGTCCGG
130 CTGCTGCCACAACCCTCGGTCCGG
20530512 CTGGGTGCTC
Statistics
Matches: 128, Mismatches: 22, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
157 1 0.01
158 92 0.72
159 35 0.27
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAACGTGCCGACGCTCAGC
CAGCCAGAGAGGCAGAATGCGCAAGCCGGGAACCGACCCGATCCCCCTCTAAGGGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCGGTCCGAT
Found at i:20531024 original size:26 final size:26
Alignment explanation
Indices: 20530995--20531047 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20530985 CCGGTCCAAT
*
20530995 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
20531021 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
20531047 C
1 C
20531048 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:20531208 original size:26 final size:26
Alignment explanation
Indices: 20531179--20531231 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20531169 CCAATCTGAT
*
20531179 CTTAGAC-TGGAAATGAACTCTGTATG
1 CTTAGACATGG-AATGAACTCCGTATG
20531205 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
20531231 C
1 C
20531232 CCAAGCCTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20531294 original size:184 final size:191
Alignment explanation
Indices: 20530825--20531724 Score: 689
Period size: 197 Copynumber: 4.7 Consensus size: 191
20530815 TCTGGCTGGG
* * * *
20530825 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * * * *
20530890 CCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCG-GCCTAT-CCACCCTGCATGCTGTCGATC
66 CCGATCGAAGAGGCAGAACGCGCAAGCTGAGGATCGACCCGATCCCCCCCTACGTGCTGCCGATC
* * * * ** *
20530953 CTGCTGCTAGTCC-TGCTGTCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCG
131 C-ACTGCT-GGCCAT-C-G-C--AACCCTAGATCCAATCCGATCTTAGACTGGGAATGAACTCCG
20531017 TAT
189 TAT
* * *
20531020 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
20531085 CCGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATC-AGCCTGGTCCCTCCC-ACGTGCTGTCGAT
66 CCGATCGAAGAGGCAGAACGCGCAAGCTGAGGATCGA-CCCGATCCCCCCCTACGTGCTGCCGAT
* * *
20531148 -C-CTGCT-G-C-T-GCAACCCTCAG-TCCAATCTGATCTTAGACTGGAAATGAACTCTGTAT
130 CCACTGCTGGCCATCGCAACCCT-AGATCCAATCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
20531204 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCTACCCACGAAACGAGCGTGCGGGCGCTC-G
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
20531268 ACCGATCGAAGAGGTAGAACGCGCAAGCTGGGGATCGACCCGATCCCCCCCTGCGTGCTGCCGAT
66 -CCGATCGAAGAGGCAGAACGCGCAAGCTGAGGATCGACCCGATCCCCCCCTACGTGCTGCCGAT
* *** * *
20531333 CCTACTGCTGGTCCTACTATCGCAACCCTTGATCTGGTCCGATCTTAGATTGGGAATGAACTCCA
130 CC-ACTGCTGG--C--C-ATCGCAACCCTAGATCCAATCCGATCTTAGACTGGGAATGAACTCCG
20531398 TAT
189 TAT
* * *
20531401 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGTTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * ** *
20531466 CC-AGCCGAAAAGGCAGAATGCGTAAGCCGAGGACCGGCCCGGT-CGCCCCTGTGTGCTGTCGAT
66 CCGA-TCGAAGAGGCAGAACGCGCAAGCTGAGGATCGACCCGATCCCCCCCTACGTGCTGCCGAT
* * * * * ** *
20531529 CCTACTGCTGGTCCTGCTACCGCAACCTTCGATTCGATTTGATCTTAAACTGGGAATGAACTCCG
130 CC-ACTGCTGG--C--C-ATCGCAACCCTAGATCCAATCCGATCTTAGACTGGGAATGAACTCCG
20531594 TAT
189 TAT
* * * * *
20531597 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAATGAGCGTTCGGGTGCTGA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AAACGAGCGTGCGGGCGCTCA
* * * * * * * * * **
20531662 GCTGACCGGAGAGGCATAATGCGCAAGCAGGGGATCGGCCC-AGTCCCCCTCTGTGTGCTGCCG
65 GCCGATCGAAGAGGCAGAACGCGCAAGCTGAGGATCGACCCGA-TCCCCCCCTACGTGCTGCCG
20531725 GTCCCGCTGC
Statistics
Matches: 581, Mismatches: 98, Indels: 49
0.80 0.13 0.07
Matches are distributed among these distances:
183 1 0.00
184 134 0.23
185 13 0.02
186 2 0.00
187 1 0.00
188 5 0.01
189 1 0.00
190 2 0.00
193 5 0.01
194 1 0.00
195 91 0.16
196 131 0.23
197 177 0.30
198 17 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (191 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGAAGAGGCAGAACGCGCAAGCTGAGGATCGACCCGATCCCCCCCTACGTGCTGCCGATC
CACTGCTGGCCATCGCAACCCTAGATCCAATCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:20531424 original size:381 final size:385
Alignment explanation
Indices: 20530825--20531724 Score: 1064
Period size: 381 Copynumber: 2.3 Consensus size: 385
20530815 TCTGGCTGGG
*
20530825 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCGA
* * * * * *
20530890 CCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTAT-CCACCCTGCATGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCAGGGGATC-GCCCATCCCCCCCTGCGTGCTGCCGATCC
* * * * * *
20530954 TGCTGCTAGTCCTGCTGTCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTA
130 TACTGCTAGTCCTACTATCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCATA
** *
20531019 TGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCA
195 TGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCA
* * * * * * *
20531084 GCCGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCAGCCTGGTC-CCTCCCACGTGCTGTCGA-
260 GCCAGCCGAAAAGGCAGAATGCGCAAGCCGAGGACCAGCCCGGTCGCC-CCCACGTGCTGTCGAC
* *
20531147 T-C-CT-G-CTGCT-GCAACCCTC-AGTCCAATCTGATCTTAGACTGGAAATGAACTCTGTAT
324 TACGCTGGCCTGCTCGCAACCCTCGA-TCCAATCTGATCTTAAACTGGAAATGAACTCCGTAT
* * * * *
20531204 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCTACCCACGAAACGAGCGTGCGGGCGCTCGA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCGA
* * * * *
20531269 CCGATCGAAGAGGTAGAACGCGCAAGCTGGGGATCGACCCGATCCCCCCCTGCGTGCTGCCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCAGGGGATCG-CCC-ATCCCCCCCTGCGTGCTGCCGATC
* * * * *
20531334 CTACTGCTGGTCCTACTATCGCAACCCTTGATCTGGTCCGATCTTAGATTGGGAATGAACTCCAT
129 CTACTGCTAGTCCTACTATCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCAT
* * *
20531399 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGTTT
194 ATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTC
* * ***
20531464 AGCCAGCCGAAAAGGCAGAATGCGTAAGCCGAGGACCGGCCCGGTCGCCCCTGTGTGCTGTCGAT
259 AGCCAGCCGAAAAGGCAGAATGCGCAAGCCGAGGACCAGCCCGGTCGCCCCCACGTGCTGTCGA-
* * * * *
20531529 CCTACTGCTGGTCCTGCTACCGCAACCTTCGATTCGATTTGATCTTAAACTGGGAATGAACTCCG
323 -CTAC-GCTGG-CCTGCT--CGCAACCCTCGATCCAATCTGATCTTAAACTGGAAATGAACTCCG
20531594 TAT
383 TAT
* *
20531597 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAATGAGCGTTCGGGTGCT-G
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AAATGAGCGTACGGGTGCTCG
* * * *
20531661 AGCTGACCGGAGAGGCATAATGCGCAAGCAGGGGATCGGCCCAGTCCCCCTCTGTGTGCTGCCG
65 A-CCGACCGGAGAGGCAGAATGCGCAAGCAGGGGATC-GCCCA-TCCCCCCCTGCGTGCTGCCG
20531725 GTCCCGCTGC
Statistics
Matches: 433, Mismatches: 67, Indels: 27
0.82 0.13 0.05
Matches are distributed among these distances:
378 1 0.00
379 90 0.21
380 2 0.00
381 180 0.42
382 2 0.00
384 1 0.00
385 1 0.00
387 2 0.00
388 1 0.00
390 5 0.01
393 81 0.19
394 66 0.15
395 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (385 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCGA
CCGACCGGAGAGGCAGAATGCGCAAGCAGGGGATCGCCCATCCCCCCCTGCGTGCTGCCGATCCT
ACTGCTAGTCCTACTATCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCATAT
GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
CCAGCCGAAAAGGCAGAATGCGCAAGCCGAGGACCAGCCCGGTCGCCCCCACGTGCTGTCGACTA
CGCTGGCCTGCTCGCAACCCTCGATCCAATCTGATCTTAAACTGGAAATGAACTCCGTAT
Found at i:20531601 original size:196 final size:197
Alignment explanation
Indices: 20531172--20531642 Score: 610
Period size: 196 Copynumber: 2.4 Consensus size: 197
20531162 CCTCAGTCCA
* * *
20531172 ATCTGATCTTAGACTGGAAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCCAAG
1 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * * * * * * *
20531237 CCTACCCACGAAACGAGCGTGCGGGCGCTCGACCGATCGAAGAGGTAGAACGCGCAAGCTGGGGA
66 CCAACCCACGAAACGAACGTGCGGGCGCTAGACCGACCGAAAAGGCAGAACGCGCAAGCCGAGGA
* *
20531302 TCGACCCGATCCCCCCCTGCGTGCTGCCGATCCTACTGCTGGTCCTACTATCGCAACCCTTGATC
131 CCGACCCGATCCCCCCCTGCGTGCTGCCGATCCTACTGCTGGTCCTACTACCGCAACCCTTGATC
20531367 TG
196 TG
* * * *
20531369 GTCCGATCTTAGATTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAG
1 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * *
20531434 CCAACCCACGAAACGAACGTGCGGGCGTTTAG-CC-AGCCGAAAAGGCAGAATGCGTAAGCCGAG
66 CCAACCCACGAAACGAACGTGCGGGCG-CTAGACCGA-CCGAAAAGGCAGAACGCGCAAGCCGAG
* * * * * *
20531497 GACCGGCCCGGT-CGCCCCTGTGTGCTGTCGATCCTACTGCTGGTCCTGCTACCGCAA-CCTTCG
129 GACCGACCCGATCCCCCCCTGCGTGCTGCCGATCCTACTGCTGGTCCTACTACCGCAACCCTT-G
20531560 AT-TCG
193 ATCT-G
* *
20531565 ATTTGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAG
1 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAG
*
20531630 CCAACCCATGAAA
66 CCAACCCACGAAA
20531643 ATGAGCGTTC
Statistics
Matches: 237, Mismatches: 33, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
195 5 0.02
196 116 0.49
197 114 0.48
198 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (197 bp):
ATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAG
CCAACCCACGAAACGAACGTGCGGGCGCTAGACCGACCGAAAAGGCAGAACGCGCAAGCCGAGGA
CCGACCCGATCCCCCCCTGCGTGCTGCCGATCCTACTGCTGGTCCTACTACCGCAACCCTTGATC
TG
Found at i:20531991 original size:157 final size:159
Alignment explanation
Indices: 20531597--20532004 Score: 457
Period size: 159 Copynumber: 2.6 Consensus size: 159
20531587 AACTCCGTAT
* * *
20531597 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAATGAGCGTTCGGGTGCTGA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG-AAACGAGCGTACGGGTGCTCA
* * * * * *
20531662 GCTGACCGGAGAGGCATAATGCGCAAGCAGGGGATCGGCCCAGTCCCCCTCTGTGTGCTGCCGGT
65 GCCGACCGGAGAGGCAAAATGCGTAAGCAGGGGATCGACCCAGTCCCCCTCTGTGTGCTACCGAT
* ****
20531727 CCCGCTGCCACAACCCTCGGTCCGGTTGGG
130 CCCGCTACCACAACCCTCGGTCCGGTCCCA
* *
20531757 GCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCATGAAACGGGCTTACGGGTGCTCA
1 GCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCA
* * * * *
20531821 ACCGGCCGGAGAGGCAAAATGCGTAAGCTGGGGATCGACCCAGTCCCTC-CTGCT-TGCTATCGA
65 GCCGACCGGAGAGGCAAAATGCGTAAGCAGGGGATCGACCCAGTCCCCCTCTG-TGTGCTACCGA
* * *
20531884 TCCTGCTACCGCAACCCTCGGTTCGGTCCCA
129 TCCCGCTACCACAACCCTCGGTCCGGTCCCA
* * * * *
20531915 TCTTAGAC-TGAGAATGAACTCCGTATG-CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCA
* **
20531978 GCCGACCAGAGAGGCAGGATGCGTAAG
65 GCCGACCGGAGAGGCAAAATGCGTAAG
20532005 TCGAGGATTG
Statistics
Matches: 208, Mismatches: 36, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
157 55 0.26
158 53 0.25
159 58 0.28
160 41 0.20
161 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAG
CCGACCGGAGAGGCAAAATGCGTAAGCAGGGGATCGACCCAGTCCCCCTCTGTGTGCTACCGATC
CCGCTACCACAACCCTCGGTCCGGTCCCA
Found at i:20532650 original size:26 final size:26
Alignment explanation
Indices: 20532612--20532664 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20532602 GGCTCAAAAT
20532612 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20532638 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
20532664 C
1 C
20532665 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20533702 original size:26 final size:26
Alignment explanation
Indices: 20533664--20533716 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20533654 GCTCAAAAAT
20533664 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20533690 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
20533716 C
1 C
20533717 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20534083 original size:159 final size:156
Alignment explanation
Indices: 20533689--20534191 Score: 410
Period size: 158 Copynumber: 3.2 Consensus size: 156
20533679 AACTCCGTAT
** ***
20533689 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACAAATGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG-GCGTGTAGG-GCTCAG
* * *
20533754 CCGGCCAGAGAGGCAGAATGCACAAGCC-AGGGATCGGCCGGGTCCCCCCTGCGTGCTGTAGATC
64 CCGGCCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGGCCGGGTCCCCCCTGCGTGCTGCAGATC
* * * *
20533818 CTACTGCCGCAACCCTCGGTCCGATCTGA
128 CTACTACCACAACCCTCAGTCCGAGCTGA
* * * * * * * *
20533847 TCTCAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAAC-GAGTGTACGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGCGTGTA-GGG--CTC
** * * * * *
20533910 AGCCGATCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCGG
62 AGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCGGGTCCCCC-CTGCGTGCTGCAGA
* * *
20533975 TCCTGCTACCACAACCCTCAGTCTG-GCTGGG
126 TCCTACTACCACAACCCTCAGTCCGAGCT-GA
* *
20534006 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-GGCGTGTAGG-GCTCAG
* * * * * ** *
20534071 TCGGCCGGAGAGGCAGAATGCGTAAGTCGAGGATCGACCCGGTCTGCCCTGCGTGCTTCCA-ATC
64 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCGGGTCCCCCCTGCGTGC-TGCAGATC
** *
20534135 CTACTACCGTAACCCTC-GATCC-AGTCCGA
128 CTACTACCACAACCCTCAG-TCCGAG-CTGA
* *
20534164 GGTTAGAC-TGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
20534192 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 63, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
156 4 0.02
157 5 0.02
158 133 0.50
159 114 0.43
160 3 0.01
161 7 0.03
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGCGTGTAGGGCTCAGCC
GGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCGGGTCCCCCCTGCGTGCTGCAGATCCTA
CTACCACAACCCTCAGTCCGAGCTGA
Found at i:20534206 original size:26 final size:26
Alignment explanation
Indices: 20534166--20534217 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20534156 CAGTCCGAGG
*
20534166 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
20534192 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
20534218 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:20534392 original size:26 final size:26
Alignment explanation
Indices: 20534360--20534412 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20534350 CCGATATGAT
*
20534360 CTTAGAC-TAGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
20534386 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
20534412 C
1 C
20534413 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20537517 original size:26 final size:25
Alignment explanation
Indices: 20537481--20537532 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
20537471 CCTGTTTGAT
20537481 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAA-TCCGTATG
*
20537507 CTTAGACTAGGGATGAATCCGTATG
1 CTTAGACTAGGAATGAATCCGTATG
20537532 C
1 C
20537533 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTAGGAATGAATCCGTATG
Found at i:20538229 original size:26 final size:26
Alignment explanation
Indices: 20538200--20538252 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20538190 CCGGTTCGAT
*
20538200 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAACGAACTCCGTATG
20538226 CTTAGACATGGAACGAACTCCGTATG
1 CTTAGACATGGAACGAACTCCGTATG
20538252 C
1 C
20538253 CTCAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAACGAACTCCGTATG
Found at i:20538740 original size:169 final size:170
Alignment explanation
Indices: 20538384--20538751 Score: 375
Period size: 170 Copynumber: 2.2 Consensus size: 170
20538374 GTCAGATCCG
* * ** * * *
20538384 ATCTTAGATTGGGAATGAACTCCGTATGCATAAGTGAACCCATGAAACAAGCGTGCGAGCTCTGA
1 ATCTTAGACTGGGAATGAACTCTGTATGCATAAGCCAACCCACGAAACAAGCGTGCGAGCGCTCA
* * * * **
20538449 GCTGGCCGAAGAGGCATAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCAAT
66 ACCGACCGAAGAGGCAGAATGCACAAGCCACGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCAAT
* **
20538514 CCCGCTGTCGGTCTGCTACCACAACCCTCGATCCAACTGG
131 CCCGCTGTCGGTCTGCTACCACAACCCTCAATCCAACTCA
** * * * *
20538554 GGCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTC
1 ATCTTAGAC-TGGGAATGAACTCTGTATGCATAAGCCAACCCACGAAACAAGCGTGCGAGCGCTC
* * * *
20538618 AACCGACCGGAGAGGCAGAATGCGCAAGCCACGGATTGGCCCGGTCCCCC-CTGCGTGCTGTCGA
65 AACCGACCGAAGAGGCAGAATGCACAAGCCACGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCAA
* ** * * **
20538682 TCCTG-TG-CTGGTCCTGCTGTCGCAACCCTCAATTCAGTTCA
130 TCCCGCTGTC-GGT-CTGCTACCACAACCCTCAATCCAACTCA
*
20538723 ATCTTAGACTGGGAATGAACTTTGTATGC
1 ATCTTAGACTGGGAATGAACTCTGTATGC
20538752 TTAGACATGG
Statistics
Matches: 158, Mismatches: 36, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
167 1 0.01
168 6 0.04
169 60 0.38
170 90 0.57
171 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (170 bp):
ATCTTAGACTGGGAATGAACTCTGTATGCATAAGCCAACCCACGAAACAAGCGTGCGAGCGCTCA
ACCGACCGAAGAGGCAGAATGCACAAGCCACGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCAAT
CCCGCTGTCGGTCTGCTACCACAACCCTCAATCCAACTCA
Found at i:20538776 original size:26 final size:26
Alignment explanation
Indices: 20538725--20538777 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20538715 TCAGTTCAAT
***
20538725 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20538751 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
20538777 C
1 C
20538778 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20538824 original size:525 final size:530
Alignment explanation
Indices: 20537689--20538834 Score: 1466
Period size: 525 Copynumber: 2.2 Consensus size: 530
20537679 TCCGACTGGG
* *
20537689 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGTGTGCGGGTGCTCAG
** * ** *
20537754 TCGACCGGAGAGGCAAAATGCACAAGTCGGGGATTGGCCCGGTCCCCCTGCGTGCTGTCAATCTT
66 TCGGTCGGAGAGGCAAAATGCACAAGCCGGGGACCGGCCCGGTCCCCCTGCGTGCTATCAATCTT
* *
20537819 GCTACCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
131 GCTACCACAACCCTCAGTCAGATCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAC
* * *
20537884 CCACTAAACAAGCGTGCGGGCGCTCAATAGGCCGTAGAGGTCGATCGGAGAGGCATAATGCGCAA
196 CCACTAAACAAGCGTGC-GGAGCTC-ATAGGCCGT--AGGTC-A-CGAAGAGGCATAATGCACAA
* * *
20537949 GCCGGGGATTAGCTCGGTCCCCCTCTGCGTGCTCTCGATCCCACTACCGGTCCTGCTACCACAAC
255 GCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTCTCAATCCCACTACCGGTCCTGCTACCACAAC
* ** * *
20538014 CCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCATGAAATGA
320 CCTCGATCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGA
* * * * ** *
20538079 GCGTGCGGGCGCTTAATCGGCTGGAGAGGCAGAATGAGCAAGCCACGGATTGGTTCGGTCCCTCC
385 GCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGAGCAAGCCACGGATTGGCCCGGTCCCCCC
* * * * *
20538144 TGCGTGCTGTCGATCCTGTGCTGGTCCTGCTACCGTAACCCTTAGTCCGGTTCGATCTTAGACTG
450 TGCGTGCTGTCGATCCTGTGCTGGTCCTGCTACCGCAACCCTCAATCCAGTTCAATCTTAGACTG
20538209 GGAATGAACTCCGTAT
515 GGAATGAACTCCGTAT
* * * * *
20538225 GCTTAGACATGGAACGAACTCCGTATGCCTCAGCCAACCCATGAAACAAGTGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGTGTGCGGGTGCTCAG
* * * * * * * *
20538290 CCCGTCGGAGAGGTAGGAATGCATATGCCGGGGACCGGCTCGGTCCCCCCCTGCGTGCTATCGAT
66 TCGGTCGGAGAGGCA-AAATGCACAAGCCGGGGACCGGCCCGGT--CCCCCTGCGTGCTATCAAT
* *** * * * *
20538355 CTTGCTGCTGTAACCCTCGGTCAGATCCGATCTTAGATTGGGAATGAACTCCGTATGCATAAGTG
128 CTTGCTACCACAACCCTCAGTCAGATCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTC
20538420 AACCCA-TGAAACAAGCGTGC-GAGCTC-T-GAG-C-T-GG-C-CGAAGAGGCATAATGCACAAG
193 AACCCACT-AAACAAGCGTGCGGAGCTCATAG-GCCGTAGGTCACGAAGAGGCATAATGCACAAG
* * * **
20538476 CCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCAATCCCGCTGTCGGT-CTGCTACCACAACC
256 CCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTCTCAATCCCACTACCGGTCCTGCTACCACAACC
* *
20538540 CTCGATCCAACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAG
321 CTCGATCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAG
* *
20538605 TGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCACGGATTGGCCCGGTCCCCCCT
386 CGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGAGCAAGCCACGGATTGGCCCGGTCCCCCCT
** *
20538670 GCGTGCTGTCGATCCTGTGCTGGTCCTGCTGTCGCAACCCTCAATTCAGTTCAATCTTAGACTGG
451 GCGTGCTGTCGATCCTGTGCTGGTCCTGCTACCGCAACCCTCAATCCAGTTCAATCTTAGACTGG
**
20538735 GAATGAACTTTGTAT
516 GAATGAACTCCGTAT
* * * *
20538750 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGGGTGTGAGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGTGTGCGGGTGCTCAG
*
20538815 TCGGTCGGAGAGGCAGAATG
66 TCGGTCGGAGAGGCAAAATG
20538835 TGCAAGTCGG
Statistics
Matches: 526, Mismatches: 79, Indels: 22
0.84 0.13 0.04
Matches are distributed among these distances:
524 5 0.01
525 266 0.51
526 61 0.12
529 1 0.00
530 2 0.00
533 1 0.00
534 2 0.00
535 2 0.00
536 69 0.13
537 26 0.05
538 1 0.00
539 90 0.17
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (530 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGTGTGCGGGTGCTCAG
TCGGTCGGAGAGGCAAAATGCACAAGCCGGGGACCGGCCCGGTCCCCCTGCGTGCTATCAATCTT
GCTACCACAACCCTCAGTCAGATCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAC
CCACTAAACAAGCGTGCGGAGCTCATAGGCCGTAGGTCACGAAGAGGCATAATGCACAAGCCGGG
GATCAGCCCGGTCCCCCTCTGCGTGCTCTCAATCCCACTACCGGTCCTGCTACCACAACCCTCGA
TCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCGTGC
GGGCGCTCAACCGACCGGAGAGGCAGAATGAGCAAGCCACGGATTGGCCCGGTCCCCCCTGCGTG
CTGTCGATCCTGTGCTGGTCCTGCTACCGCAACCCTCAATCCAGTTCAATCTTAGACTGGGAATG
AACTCCGTAT
Found at i:20538951 original size:26 final size:26
Alignment explanation
Indices: 20538922--20538974 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20538912 CCGGTCTGAT
20538922 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
20538948 CTTAGGCATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
20538974 C
1 C
20538975 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20538965 original size:197 final size:195
Alignment explanation
Indices: 20538555--20539024 Score: 584
Period size: 197 Copynumber: 2.4 Consensus size: 195
20538545 TCCAACTGGG
* * *
20538555 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGTGTGCGGGCGCTCAG
* * * * * **
20538620 CCGACCGGAGAGGCAGAATGCGCAAGCCACGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 TCGGCCGGAGAGGCAGAATGCGCAAGCCACGGATCGGCCCGATCCCCCCTACGTGCTACCGATCC
* * * **
20538685 TGTGCTGGTCCTGCTGTCGCAACCCTCAATTCAGTTCAATCTTAGACTGGGAATGAACTTTGTAT
131 TCTACTGGTCCTGCTGTCGCAACCCTCAATCCAGTTCAATCTTAGACTGGGAATGAACTCCGTAT
* * *
20538750 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGGGTGTGAGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGTGTGCGGGCGCTCAG
* * * ** ** *
20538815 TCGGTCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGGTCGATCCCCCCCTATGTGCTACCGATC
66 TCGGCCGGAGAGGCAGAATGCGCAAGCCACGGATCGGCCCGAT-CCCCCCTACGTGCTACCGATC
* * *
20538880 CTACTACTGGTCCTGCTG-CGGCAACCCTCAGTCC-GGTCTGATCTTAGACTGGGAATGAACTCC
130 CT-CTACTGGTCCTGCTGTC-GCAACCCTCAATCCAGTTC-AATCTTAGACTGGGAATGAACTCC
20538943 GTAT
192 GTAT
* * * *
20538947 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGTGTGCGGGCGCTCAG
*
20539012 TCGGCCTGAGAGG
66 TCGGCCGGAGAGG
20539025 TCGGTCGGAG
Statistics
Matches: 233, Mismatches: 38, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
195 91 0.39
196 23 0.10
197 119 0.51
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (195 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGTGTGCGGGCGCTCAG
TCGGCCGGAGAGGCAGAATGCGCAAGCCACGGATCGGCCCGATCCCCCCTACGTGCTACCGATCC
TCTACTGGTCCTGCTGTCGCAACCCTCAATCCAGTTCAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:20539341 original size:26 final size:26
Alignment explanation
Indices: 20539312--20539374 Score: 117
Period size: 26 Copynumber: 2.4 Consensus size: 26
20539302 TCTTATACTA
*
20539312 GGAATGAACTCCGTACGCTTAGACAT
1 GGAATGAACTCCGTAAGCTTAGACAT
20539338 GGAATGAACTCCGTAAGCTTAGACAT
1 GGAATGAACTCCGTAAGCTTAGACAT
20539364 GGAATGAACTC
1 GGAATGAACTC
20539375 TGTATGCCTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (26 bp):
GGAATGAACTCCGTAAGCTTAGACAT
Found at i:20539645 original size:159 final size:156
Alignment explanation
Indices: 20539424--20540449 Score: 519
Period size: 159 Copynumber: 6.4 Consensus size: 156
20539414 CTAAGCCGGT
* * * * * *
20539424 CGGAGAGGCATAATGCACAAGCCGGGGATCAGG-CAGGTCCCCCTCTACATGCTG-CTGGTCCTG
1 CGGAGAGGCAGAATGCGCAAGCCGGGGATC-GGCCCGGTCCCCC-CTGCGTGCTGTC-GATCCTG
* * * *
20539487 CAGCCACAACCCTCGATCCAGTTGGGGCTTAGACATGGAATGAAATCCCTACACCTAAGCCAACC
63 CTGCCACAACCCTTGGTCC-GTAGGGGCTTAGACATGGAATGAAATCCCTAC-CCTAAGCCAACC
* *
20539552 CATGAAATGGGCATGCGGGAGCTCAGTCAAC
126 CATGAAATGGGCGTGCGGGCGCTCAGTCAAC
** * *
20539583 CGGAGAGGCAGAATGCGCAAGTTGGGGATTGGCCCGATCCACCCCTGCGTGCTGTCGATCCTGCT
1 CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCC-CCCCTGCGTGCTGTCGATCCTGCT
* ** ** ** * * * *
20539648 GCCGCAACCCTTGGTTTGGTCCGATCTGAGAC-TGGGAATGAACA-CCGTATGCCTAAGTCAACC
65 GCCACAACCCTTGG-TCCGTAGGGGCTTAGACAT-GGAATGAA-ATCCCTA-CCCTAAGCCAACC
* * * * * * *
20539711 CATAAAATGAGTGTGCGGCCGTTGAG-CTAGC
126 CATGAAATGGGCGTGCGGGCGCTCAGTC-AAC
* ** * * * * * *
20539742 CGGAGAGGCATAATGCGCAAGCCAAGGATCGACTCGGTCTCCCTCTGCGTGCTATCGGTCCCGCT
1 CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTC-CCCCCTGCGTGCTGTCGATCCTGCT
* * * *
20539807 GCCACAACCCTTGGTCCGATAGGGGCTTAGACATGGACTGAACTTCCTATGCCCCAAGCCAACCC
65 GCCACAACCCTTGGTCCG-TAGGGGCTTAGACATGGAATGAAATCCCTA--CCCTAAGCCAACCC
*
20539872 ATGAAATGGGCGTGCGGGCGCTCAGTCGAC
127 ATGAAATGGGCGTGCGGGCGCTCAGTCAAC
* *
20539902 CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCAGGT-CCCCCTACGTGCTGTCGATCCTGCTG
1 CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGAT-C--CTG
* ***** * * * *
20539966 CTGGTCCTATTGCTGTAACCCTTAGTCCGGTCTAATCTTAGAC-TGGGAATGAACTCCGTATGCT
63 CT-G-CC-A---C---AACCCTTGGTCC-GTAGGGGCTTAGACAT-GGAATGAAATCCCTA-CCC
** * * ***
20540030 TAAGCCAACCCACAAAATGAGCGTCCGGGCGCTCAGTCGGT
116 TAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGTCAAC
* ** * * * ** * * * * *
20540071 CGGAGAGACAGAATGCATAAGTCAGGGACCGATCTGGTCCCCCTTGCGTCCTGTCAATCCTGCTA
1 CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTG
* * * * ** ** * * * *
20540136 TCACAA-TCTTCAGTCTGGTCTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCC
66 CCACAACCCTT-GGTC-CGTAGGGGCTTAGACAT-GGAATGAAATCCCTA-CCCTAAGCCAACCC
* * * * * *
20540199 ATGAAATGAGCGTGTGGGTGCTAAGCCAGC
127 ATGAAATGGGCGTGCGGGCGCTCAGTCAAC
* * * * * * * *
20540229 TGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCATGCTGTTGGTCCCGCT
1 CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCCTGCT
* * * * *
20540294 GCCACAACCCTCGATCCGGCT-GGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCC
65 GCCACAACCCTTGGTCC-G-TAGGGGCTTAGACATGGAATGAAATCCCTA-CCCTAAGCCAACCC
* * * *
20540358 ATGAAACGGGCGTGTGGGCGCTCAGCCAGC
127 ATGAAATGGGCGTGCGGGCGCTCAGTCAAC
* ** * * *
20540388 CGTA-ACGGCAGAATGCGCAAGCCAAGGATCAGTCCGGTCCCTCCTGCGTGCTG-CTGATCCTG
1 CGGAGA-GGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTC-GATCCTG
20540450 TTGTCATAAC
Statistics
Matches: 652, Mismatches: 177, Indels: 77
0.72 0.20 0.08
Matches are distributed among these distances:
157 3 0.00
158 136 0.21
159 307 0.47
160 75 0.12
161 6 0.01
162 1 0.00
163 2 0.00
164 2 0.00
165 1 0.00
167 6 0.01
169 66 0.10
170 46 0.07
171 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTG
CCACAACCCTTGGTCCGTAGGGGCTTAGACATGGAATGAAATCCCTACCCTAAGCCAACCCATGA
AATGGGCGTGCGGGCGCTCAGTCAAC
Found at i:20541951 original size:26 final size:26
Alignment explanation
Indices: 20541900--20541952 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20541890 CCATTTCGAT
*
20541900 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20541926 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20541952 C
1 C
20541953 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20542482 original size:159 final size:156
Alignment explanation
Indices: 20542134--20542628 Score: 358
Period size: 159 Copynumber: 3.1 Consensus size: 156
20542124 AACTCCGTAT
* ** *
20542134 GCTTAGACATGGAATGAACTCCATATGCCTAAGCGAACTCACGAAATGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGC-AACCCATAAAATGAGCGTACAGGTGCTCAG
* * * * * *
20542199 CCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTGGTGCCCTCTGTGTGCTGTCGATCC
65 CCAGCCGGAAAGGCAGAATGCGCAAGCCGAGGATCGACCTGGTCCCCTCTGCGTGCTGCCGATCC
* **
20542264 TACTATCGTAACCCTCGATCTGATCTGA
130 TACTACCACAACCCTCGATCTGA-CTGA
* * * * *
20542292 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATAAAATGAGCGTTCAGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAG-CAACCCATAAAATGAGCGTACAGGTGCTCA
* * * * *
20542356 GTCAGCCGGAAAGGTATAATGCGCAAGCCGAGGATCG-GCTCGGTCCCCCTTTGCGTGCTGCC-A
64 GCCAGCCGGAAAGGCAGAATGCGCAAGCCGAGGATCGACCT-GGT-CCCCTCTGCGTGCTGCCGA
* * *
20542419 GTCCTGCTACCACAACCCTCGGTCCTG-CTGGG
127 -TCCTACTACCACAACCCTCGAT-CTGACT-GA
* * * * * * *
20542451 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCT-CTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAG-CAACCCATAAAATGAGCGTACAGG-TGCTCA
* * *** * * * * * *
20542515 GCC-GACCGGAGAGGCAGAATGCGTAATTTGGGGATCGACCCGATCCCC-CTACGTGCTACTGAT
64 GCCAG-CCGGAAAGGCAGAATGCGCAAGCCGAGGATCGACCTGGTCCCCTCTGCGTGCTGCCGAT
* * * * *
20542578 CCTGCTGCCGCAACCCTCGATCCGATCCGA
128 CCTACTACCACAACCCTCGATCTGA-CTGA
*
20542608 TCTTAGAC-TGGGAATGAACTC
1 GCTTAGACAT-GGAATGAACTC
20542629 TGTATGCTTA
Statistics
Matches: 262, Mismatches: 60, Indels: 31
0.74 0.17 0.09
Matches are distributed among these distances:
156 3 0.01
157 49 0.19
158 95 0.36
159 109 0.42
160 6 0.02
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCAACCCATAAAATGAGCGTACAGGTGCTCAGC
CAGCCGGAAAGGCAGAATGCGCAAGCCGAGGATCGACCTGGTCCCCTCTGCGTGCTGCCGATCCT
ACTACCACAACCCTCGATCTGACTGA
Found at i:20542645 original size:26 final size:26
Alignment explanation
Indices: 20542609--20542661 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20542599 CCGATCCGAT
*
20542609 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACACTGTATG
*
20542635 CTTAGACTGGGGATGAACACTGTATG
1 CTTAGACTGGGAATGAACACTGTATG
20542661 C
1 C
20542662 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACTGTATG
Found at i:20543556 original size:132 final size:132
Alignment explanation
Indices: 20543319--20543560 Score: 296
Period size: 132 Copynumber: 1.8 Consensus size: 132
20543309 CCGATCCGAT
* *
20543319 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCAGAAAATGAGCGTACGGGTGCTAAGT
1 CTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCCAGAAAATGAGCGTACGGGTGCTAAGC
* ** *
20543384 AGGTCGGAGAGGCATAATGCACAAGCTGGGGATCGGCCCGATCCCTCTCTGCATGCTTAGACTGG
66 AGGTCGGAGAGGCAAAATGCACAAGCCAGGGATCGACCCGATCCCTCTCTGCATGCTTAGACTGG
20543449 GG
131 GG
* * * * *
20543451 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACG-AAATGAGTGTGCGGGCT-CTC
1 CTTAGAC-TGGGAATAAACTCCGTATGCCTAAGCCAACCCA-GAAAATGAGCGTACGGG-TGCTA
*
20543513 AGCCA-GTCGGAGAGGCAAAATGCGCAAGCCAGGGA-CTGACCCGATCCC
63 AG-CAGGTCGGAGAGGCAAAATGCACAAGCCAGGGATC-GACCCGATCCC
20543561 CCCTGCGTGC
Statistics
Matches: 93, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
131 1 0.01
132 88 0.95
133 4 0.04
ACGTcount: A:0.27, C:0.26, G:0.29, T:0.19
Consensus pattern (132 bp):
CTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCCAGAAAATGAGCGTACGGGTGCTAAGC
AGGTCGGAGAGGCAAAATGCACAAGCCAGGGATCGACCCGATCCCTCTCTGCATGCTTAGACTGG
GG
Found at i:20543687 original size:290 final size:290
Alignment explanation
Indices: 20543160--20543708 Score: 678
Period size: 290 Copynumber: 1.9 Consensus size: 290
20543150 AACTCCATAT
* * *
20543160 GCTTAGGCATGGAATGAGCTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGACGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGACGCTCAA
* * * * *
20543225 CCGACCAGAGAGGCAGAATGCGCTAGTCGAGGACCAGACCGGTCCCCCCTGCGTGCTGTCAATCT
66 CCGACCAGAGAGGCAAAATGCGCAAGCCGAGGACCAGACCGATCCCCCCTGCGTGCTGTCAATCC
** *
20543290 TGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAA
131 TGCTACCGCAACCCTCGATCCGATCCGATCTGAGACTGGGAATAAACTCCGTATGCCTAAGTCAA
* * ** * * **
20543355 CCCAGAAAATGAGCGTACGGGTGCTAAGTAGGTCGGAGAGGCATAATGCACAAGCTGGGGATCGG
196 CCCAGAAAACGAGCATACGGGCACTAAGTAGCTCGAAGAGGCATAATGCACAAGCAAGGGATCGG
20543420 CCCGATCCCTCTCTGCATGCTTAGACTGGG
261 CCCGATCCCTCTCTGCATGCTTAGACTGGG
* * * * *
20543450 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCTCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGACGCTCAA
* * * *
20543515 CC-AGTCGGAGAGGCAAAATGCGCAAGCC-AGGGA-CTGACCCGATCCCCCCTGCGTGCTGTCGA
66 CCGA-CCAGAGAGGCAAAATGCGCAAGCCGA-GGACCAGA-CCGATCCCCCCTGCGTGCTGTCAA
* * * *
20543577 TCCTGCTACCGCAACCTTCGATCCGATCTGATCTGAGACTGGGAATGAACTTCGTATGCCTAAGT
128 TCCTGCTACCGCAACCCTCGATCCGATCCGATCTGAGACTGGGAATAAACTCCGTATGCCTAAGT
* * * *
20543642 CAACCCATG-AAACGTGCATTCGGGCACTGAGCT-GACT-GAAGAGGCATAATGCGCAAGCAAGG
193 CAACCCA-GAAAACGAGCATACGGGCACTAAG-TAG-CTCGAAGAGGCATAATGCACAAGCAAGG
20543704 GATCG
255 GATCG
20543709 AGTCGGTCCC
Statistics
Matches: 217, Mismatches: 36, Indels: 12
0.82 0.14 0.05
Matches are distributed among these distances:
289 5 0.02
290 209 0.96
291 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.28, T:0.19
Consensus pattern (290 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGACGCTCAA
CCGACCAGAGAGGCAAAATGCGCAAGCCGAGGACCAGACCGATCCCCCCTGCGTGCTGTCAATCC
TGCTACCGCAACCCTCGATCCGATCCGATCTGAGACTGGGAATAAACTCCGTATGCCTAAGTCAA
CCCAGAAAACGAGCATACGGGCACTAAGTAGCTCGAAGAGGCATAATGCACAAGCAAGGGATCGG
CCCGATCCCTCTCTGCATGCTTAGACTGGG
Found at i:20543798 original size:159 final size:159
Alignment explanation
Indices: 20543445--20543901 Score: 399
Period size: 159 Copynumber: 2.9 Consensus size: 159
20543435 CATGCTTAGA
* * ** *
20543445 CTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCT
1 CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCA
* * * *
20543510 CTCAGCCAGTCGGAGAGGCAAAATGCGCAAGCCAGGGACTGACCCGATCCCCCCTGCGTGCTGTC
66 CTCAGCCACTCGAAGAGGCAAAATGCGCAAGCAAGGGACTGACCCGATCCCCCCTGCGTGCTGCC
* * * *
20543575 GATCCTGCTACCGCAACCTTCGATCCGAT
131 GATCCCGCTACCACAACCTTCGATACGAG
** * * * * * *
20543604 CT-GATCTGAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGTGCATTCGGGC
1 CTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGC
* * * ** *
20543667 ACTGAGCTGACT-GAAGAGGCATAATGCGCAAGCAAGGGA-TCGAGTCGGTCCCCCTCTGCGTGC
65 ACTCAGC-CACTCGAAGAGGCAAAATGCGCAAGCAAGGGACT-GACCCGATCCCCC-CTGCGTGC
*
20543730 TGCCGATCCCGCTACCACAACCTTCGGTACG-G
127 TGCCGATCCCGCTACCACAACCTTCGATACGAG
* ** * * ** **
20543762 CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAAAAATGGGTGTGCGGGTG
1 CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCA
* * * * *
20543827 CTCAGCCGAC-CGGAGAGGCAAAATGGGCAAGC-TGAGGA-TCGATCCGGTCCCCCCTGCGTGCT
66 CTCAGCC-ACTCGAAGAGGCAAAATGCGCAAGCAAG-GGACT-GACCCGATCCCCCCTGCGTGCT
* *
20543889 GTCGATCCTGCTA
128 GCCGATCCCGCTA
20543902 TCGCAACCAT
Statistics
Matches: 236, Mismatches: 53, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 109 0.46
159 124 0.53
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCA
CTCAGCCACTCGAAGAGGCAAAATGCGCAAGCAAGGGACTGACCCGATCCCCCCTGCGTGCTGCC
GATCCCGCTACCACAACCTTCGATACGAG
Found at i:20543976 original size:26 final size:26
Alignment explanation
Indices: 20543926--20543978 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20543916 CTGGTTCAAT
*
20543926 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAATTCCGTATG
*
20543952 CTTAGACTGGGGATG-ATATCCGTATG
1 CTTAGACTGGGAATGAAT-TCCGTATG
20543978 C
1 C
20543979 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATTCCGTATG
Found at i:20545551 original size:26 final size:26
Alignment explanation
Indices: 20545522--20545572 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20545512 CGGTCTGATC
20545522 TTAGACTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCTGTATGG
* *
20545548 TTAGATTGGGGATGAACTCTGTATG
1 TTAGACTGGGAATGAACTCTGTATG
20545573 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.10, G:0.31, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGG
Found at i:20545804 original size:499 final size:498
Alignment explanation
Indices: 20544999--20546099 Score: 1270
Period size: 499 Copynumber: 2.2 Consensus size: 498
20544989 CCTGCTGTCA
* * * * * *
20544999 CAACCCTCGGTCAGATCTAATGTTAGACTAGGAATGAACTCTGTATGCG-TAGACATGGAATGAA
1 CAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATG-GTTAGA-ATGGGATGAA
* * * *
20545063 CTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGTTCAGCCGGCCGGAGAGGCAAAA
64 CTCTGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGACCGGAGAGGCAAAA
* * * *
20545128 TGCAGAAGCCGAGGACCTGCTTGATTCCCCCCTATGTGCTGTCAATCCTGCTACCATAACCCTCG
128 TGCAGAAGCCGAGGACCTGCTGGATTCCCCCCTATCT-CTGTCAATCCTACTACCACAACCCTCG
* * *
20545193 GTCCGGTCCGATCTTAGACTGGGAATGAACCCCATAAGCCTAAGTCAACCCACGAAACGAGCATA
192 GTCCGATCCGATCTTAGACTGGGAATGAACCCCATAAGCCTAAGCCAACCCACGAAACGACCATA
* * * * *
20545258 CGGGCGTTGAGCCGACCGAATAGGCATAAGGCGCAAGCTGGGGATCAACCCGATCCCCCTCTACC
257 CGGGCGCTGAGCAGACCGAAGAGGCATAAGGCGCAAGCCGAGGATCAACCCGATCCCCCTCTACC
* * * ** *
20545323 TACTGTCGGTCCTGCTGTCGTAACCATCGGTCCGACTGGGGCTTAGACATGGAATGAACT-CCTT
322 TACTGTCGATCCCGCTGCCACAACCATCGGTCCGACTGGAGCTTAGACATGGAATGAACTACC-T
* * *
20545387 ACGCCTAAGCCAACCCACGAAACGGGCGTGTGAGCGTTCAACCG-CCGAAGAGGCAGAATGCGCA
386 ACGCCTAAGCCAACCCACAAAACGGACGTGTGAGCGCTCAACCGACCGAAGAGGCAGAATGCGCA
* * * * *
20545451 AGTCAAGGATCGGTTCGGTCCCCCCTGCGAGTTACCGATCCTGCTACCG
451 AGCCAAGGATCGGCTCGATCCCCCCTGCGAGCT-CCGATCCTACTACCG
* * ** *
20545500 CAATCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGGTTAGATTGGGGATGAAC
1 CAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGGTTAGAAT-GGGATGAAC
* * ** *
20545565 TCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGTTCAGCCGATTGGAGAGGCAGAAT
65 TCTGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGACCGGAGAGGCAAAAT
* * * *
20545630 GC-GTAAGCCG-GGACC-GACTGGA-TCCCCCCTGCATCT-TGTCGATCCTATTGCCGCAACCCT
129 GCAG-AAGCCGAGGACCTG-CTGGATTCCCCCCT--ATCTCTGTCAATCCTACTACCACAACCCT
* * * * **
20545690 CGGTCCGATCC-ACTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAATTGACC
190 CGGTCCGATCCGA-TCTTAGACTGGGAATGAACCCCATAAGCCTAAGCCAACCCACGAAACGACC
* * * *
20545754 GTTCGGGCGCTGAGTCAG-CC-AGAGAGGCATAATGCGCAAGCCGAGGATCAACCCGGTCCCCCT
254 ATACGGGCGCTGAG-CAGACCGA-AGAGGCATAAGGCGCAAGCCGAGGATCAACCCGATCCCCCT
* * * * *
20545817 CTGCGTGCTGTCGATCCCGCTGCCACAACCCTTGGTCCGACTGGAGCTTAGACATGGAATGAACT
317 CTACCTACTGTCGATCCCGCTGCCACAACCATCGGTCCGACTGGAGCTTAGACATGGAATGAACT
* * * * *
20545882 ACCTATGCCTAAGCCAACCCACAAAACGGACGTGTGGGTGCTCAACCGACCGGAGAGGTAGAATG
382 ACCTACGCCTAAGCCAACCCACAAAACGGACGTGTGAGCGCTCAACCGACCGAAGAGGCAGAATG
* * * * *
20545947 CGCAAGCCATGGATCGGCTCGATCCCCCCTGCGTGCTGCGATCTTACTGCCG
447 CGCAAGCCAAGGATCGGCTCGATCCCCCCTGCGAGCTCCGATCCTACTACCG
* * *
20545999 CAACCCTCGGTCCTGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATAGGGATGAAC
1 CAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGGTTAGAAT-GGGATGAAC
*
20546064 TCTGTATGCCTAAGCAACCCACGAAACGAGTGTGCG
65 TCTGTATGCCTAAGCAACCCACGAAACGAGCGTGCG
20546100 AGGGCTCAAC
Statistics
Matches: 504, Mismatches: 85, Indels: 25
0.82 0.14 0.04
Matches are distributed among these distances:
498 22 0.04
499 303 0.60
500 61 0.12
501 118 0.23
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (498 bp):
CAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGGTTAGAATGGGATGAACT
CTGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGACCGGAGAGGCAAAATGC
AGAAGCCGAGGACCTGCTGGATTCCCCCCTATCTCTGTCAATCCTACTACCACAACCCTCGGTCC
GATCCGATCTTAGACTGGGAATGAACCCCATAAGCCTAAGCCAACCCACGAAACGACCATACGGG
CGCTGAGCAGACCGAAGAGGCATAAGGCGCAAGCCGAGGATCAACCCGATCCCCCTCTACCTACT
GTCGATCCCGCTGCCACAACCATCGGTCCGACTGGAGCTTAGACATGGAATGAACTACCTACGCC
TAAGCCAACCCACAAAACGGACGTGTGAGCGCTCAACCGACCGAAGAGGCAGAATGCGCAAGCCA
AGGATCGGCTCGATCCCCCCTGCGAGCTCCGATCCTACTACCG
Found at i:20546935 original size:26 final size:26
Alignment explanation
Indices: 20546899--20546951 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20546889 TCGGTCTGAT
*
20546899 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
20546925 CTTAGATTGGGGATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
20546951 C
1 C
20546952 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:20547378 original size:159 final size:159
Alignment explanation
Indices: 20547110--20547549 Score: 458
Period size: 159 Copynumber: 2.8 Consensus size: 159
20547100 CGACGGGGGA
* * * * * *
20547110 TTAGATATAGAATGAACTCCGAATGCCTAAGGCAACCCACGAAACGAGCGTGCAGGCGCTCAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * *
20547175 GATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCTCCCTGCGTGCTGCCCAT-CT
66 GATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCTCCCTGCGTGCTACCCATCCC
* *** *
20547239 TGCTACCACAACCCTCGGTCTGGTCT-AATC
131 T-CTACCACAACCCTCAGTC-CACCTGAAGC
* *
20547269 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
20547333 CGACCGAAGAGGCATAATGCGTAAGCCGGGGATCGGCCCGATCCCTCTCTGTGTGCTATCGATCC
65 CGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCTCCCTGCGTGCTACCCATCC
* **
20547398 CTCTGCCACAACCCTCAGTCCACCTGGGGC
130 CTCTACCACAACCCTCAGTCCACCTGAAGC
* * * * * *
20547428 TTAGACATTGAATGAATTCCCTATGCCAAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * *
20547493 GATCGGAGAGGCAGAATGCATAAGCAGGGGATTGGCTCGAT-CC-CCCTGCATGCTACC
66 GATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCTCCCTGCGTGCTACC
20547550 GTAACCTTCG
Statistics
Matches: 230, Mismatches: 47, Indels: 10
0.80 0.16 0.03
Matches are distributed among these distances:
157 10 0.04
158 5 0.02
159 212 0.92
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (159 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCTCCCTGCGTGCTACCCATCCC
TCTACCACAACCCTCAGTCCACCTGAAGC
Found at i:20547510 original size:685 final size:672
Alignment explanation
Indices: 20546426--20547663 Score: 1492
Period size: 685 Copynumber: 1.8 Consensus size: 672
20546416 CTCCATATAC
* * * * * **
20546426 TTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCATGAAACGAGTGTGCAGGTGCTCAGTC
1 TTAGACATAGAATGAACTCCGAACGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAACC
* *** *
20546491 GGTCGGAGAGGCAGAATGCACAAGTCGAGGATCGGTGCGGTCCCCCCTGCATGCTGTCAATCCTA
66 GATCGGAGAGGCAGAATGCACAAGTCGAGGATCGACCCGGTCCCCCCTGCATGCTGCCAATCCTA
* * * *
20546556 CTACCATAACTCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACC
131 CTACCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * *
20546621 CATGAAATGAGCGTACAGACGCTGAGCCAGTCGGAGAGGCATAATGATAAAGCCGAGGATCAGCC
196 CACGAAACGAGCGTACAGACGCTGAGCCAGCCGAAGAGGCATAATGATAAAGCCGAGGATCAGCC
* * * * * *
20546686 CGGTCCAGTTCTGCGTGTTGTTAGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCATAGACAC
261 CGATCCACTTCTGCGTGCTATGAGTCCCGCTGCCACAACCCTCAGTCCGACTGGGGCATAGACAC
* * *
20546751 GGAATGAACTCCCTCTGCCTAAGCGAACCCACAAAACGGGCGTAGAGGCACTCCACCAGCCAGAG
326 GGAATGAACTCCCTATGCCAAAGCCAACCCACAAAACGGGCGTAGAGGCACTCCACCAGCCAGAG
* * * * *
20546816 ACACAGAATGCGTAAGCCGGTGATCGGCTCGGTCCTCCCTGCGTGCTGTCGATCC-TACAACCAC
391 ACACAGAATGCATAAGCAGGGGATCGGCTCGATCC-CCCTGCATGC--T--A-CCGT------A-
* *
20546880 GACCCTC-GTTCGGTCTGATCTTAGACTGGGAATGAACTCCG-TATGCTTAGATTGGGGATGAAC
443 -ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT-CGATATGCTTAGACTGGGGATGAAC
* *
20546943 TCCGCATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTA-GCTCAGCCAGTCAGAAGGGCCGGT
506 TCCACATGCCTAAGCCAACCCACGAAACGAGCGTGCGG-ACGCTCAGCCAGTCAGAAGGGCCGGT
20547007 CGGAGAGCCATAATACGCAAGCCTGGGATCAGCCCGGTCCCCCTCTATGTGCTACCGATCCCGCT
570 CGGAGAGCCATAATACGCAAGCCTGGGATCAGCCCGGTCCCCCTCTATGTGCTACCGATCCCGCT
20547072 ACCGGTCCTACTGCTATAACCCTCGCTCCGACGGGGGA
635 ACCGGTCCTACTGCTATAACCCTCGCTCCGACGGGGGA
* * *
20547110 TTAGATATAGAATGAACTCCGAATGCCTAAGGCAACCCACGAAACGAGCGTGCAGGCGCTCAACC
1 TTAGACATAGAATGAACTCCGAACGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAACC
* * * * *
20547175 GATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCTCCCTGCGTGCTGCCCATCTT
66 GATCGGAGAGGCAGAATGCACAAGTCGAGGATCGACCCGGTCCC-CCCTGCATGCTGCCAATCCT
* * * *
20547240 GCTACCACAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
130 ACTACCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
20547305 CCACGAAACGAGCGTGCGGGCGCTGAGCC-GACCGAAGAGGCATAATGCGT-AAGCCGGGGATCG
195 CCACGAAACGAGCGTACAGACGCTGAGCCAG-CCGAAGAGGCATAATG-ATAAAGCCGAGGATCA
* * *
20547368 GCCCGATCC-CTCTCTGTGTGCTATCGA-TCCCTCTGCCACAACCCTCAGTCC-ACCTGGGGCTT
258 GCCCGATCCACT-TCTGCGTGCTAT-GAGTCCCGCTGCCACAACCCTCAGTCCGA-CTGGGGCAT
** * * * * *
20547430 AGACATTGAATGAATTCCCTATGCCAAAGCCAACCCACGAAACGGGTGT-GCGGGCGCT-CAGCC
320 AGACACGGAATGAACTCCCTATGCCAAAGCCAACCCACAAAACGGGCGTAG-AGGCACTCCA-CC
* * ** * *
20547493 -GATCGGAGAGGCAGAATGCATAAGCAGGGGATTGGCTCGATCCCCCTGCATGCTACCGTAACCT
383 AG-CCAGAGACACAGAATGCATAAGCAGGGGATCGGCTCGATCCCCCTGCATGCTACCGTAACCC
*
20547557 TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCGATATGCTTAGACTGGGGATGAACTCCATA
447 TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCGATATGCTTAGACTGGGGATGAACTCCACA
* *
20547622 TGCCTAAGCCAACCCATGAAATGAGCGTGCGGACGCTCAGCC
512 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAGCC
20547664 GACCAGAGAG
Statistics
Matches: 466, Mismatches: 75, Indels: 37
0.81 0.13 0.06
Matches are distributed among these distances:
672 8 0.02
673 92 0.20
674 1 0.00
679 2 0.00
680 2 0.00
682 1 0.00
684 109 0.23
685 249 0.53
686 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (672 bp):
TTAGACATAGAATGAACTCCGAACGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAACC
GATCGGAGAGGCAGAATGCACAAGTCGAGGATCGACCCGGTCCCCCCTGCATGCTGCCAATCCTA
CTACCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTACAGACGCTGAGCCAGCCGAAGAGGCATAATGATAAAGCCGAGGATCAGCC
CGATCCACTTCTGCGTGCTATGAGTCCCGCTGCCACAACCCTCAGTCCGACTGGGGCATAGACAC
GGAATGAACTCCCTATGCCAAAGCCAACCCACAAAACGGGCGTAGAGGCACTCCACCAGCCAGAG
ACACAGAATGCATAAGCAGGGGATCGGCTCGATCCCCCTGCATGCTACCGTAACCCTCGGTCCGG
TCTGATCTTAGACTGGGAATGAACTCGATATGCTTAGACTGGGGATGAACTCCACATGCCTAAGC
CAACCCACGAAACGAGCGTGCGGACGCTCAGCCAGTCAGAAGGGCCGGTCGGAGAGCCATAATAC
GCAAGCCTGGGATCAGCCCGGTCCCCCTCTATGTGCTACCGATCCCGCTACCGGTCCTACTGCTA
TAACCCTCGCTCCGACGGGGGA
Found at i:20547608 original size:26 final size:26
Alignment explanation
Indices: 20547572--20547624 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20547562 CCGGTCTGAT
*
20547572 CTTAGACTGGGAATGAACTCGATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20547598 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20547624 C
1 C
20547625 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20548332 original size:26 final size:26
Alignment explanation
Indices: 20548294--20548346 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20548284 GGCTCAAACT
*
20548294 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
20548320 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
20548346 C
1 C
20548347 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:20548507 original size:26 final size:26
Alignment explanation
Indices: 20548478--20548530 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20548468 CTGATCCAAT
20548478 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
20548504 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20548530 C
1 C
20548531 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20549236 original size:25 final size:26
Alignment explanation
Indices: 20549199--20549250 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
20549189 GGCTCAAACT
*
20549199 CTTAGACTGGGAAT-AACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
20549224 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
20549250 C
1 C
20549251 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:20549410 original size:26 final size:26
Alignment explanation
Indices: 20549381--20549433 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20549371 CTGATCCAAT
20549381 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
20549407 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20549433 C
1 C
20549434 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20549683 original size:904 final size:901
Alignment explanation
Indices: 20547570--20549851 Score: 3988
Period size: 906 Copynumber: 2.5 Consensus size: 901
20547560 GTCCGGTCTG
* * *
20547570 ATCTTAGACTGGGAATGAACTCGATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* * *
20547635 CCATGAAATGAGCGTGCGGACGCTCAGCCGACCAGAGAGATAGGATGCGCCAACCGGGGATCGAA
66 CCATGAAATGAGCGTGCGGACGCTCAGCCGACCAGAGAG-GAGGATGCG-CAAGCGAGGATCGAA
* ** * * *
20547700 CGGGTGGTAGGTGGGTTGAACCACATCTTCATATTACTGCCATGCCAATGCCATTTTCATGGCTT
129 CGGGTGGTAGGTGGGTTCAAGAACATCTTCATATT-TTGCCATTCCAATGCCATTTTTATGGCTT
* * *
20547765 GTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACCCTTTTTCT
193 GTAAATTCATACAATGGTCCCCTACGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCT
** * *
20547830 ATTTTTCACGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTAAAAATTTTTTTAGAAAGAGTTT
258 ATTTTTCACGATTTTCAAAAC-TTTTGTAGTTTGGGATTTTTTAAAATTTTTTTAGAAAGAGTTT
20547895 TGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAA
322 TGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAA
20547960 AAACTCGAAGTGGAGAAGATTTTGTGACCATTTTAAAAAAGTGTCCCCAGTTTTGACACTTTAAT
387 AAACTCGAAGTGGAGAAGATTTTGTGACCATTTTAAAAAAGTGTCCCCAGTTTTGACACTTTAAT
20548025 GGCTATTGCCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGATGTTT
452 GGCTATTG-CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGATGTTT
20548090 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTCCGCACA
516 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTCCGCACA
20548155 CCCCCCGGCCCCCCCAATCGCTGGAACCCATAATGCCGTCGGTTAGGCTCTCTGACGATGCTCTG
581 CCCCCCGGCCCCCCCAATCGCTGGAACCCATAATGCCGTCGGTTAGGCTCTCTGACGATGCTCTG
20548220 GCGATGGTGCCCGGGCGAAAAAAATGTGGCACTAGCACATGCCCGAGCCCAGGATGTGCACCGTG
646 GCGATGGTGCCCGGGCGAAAAAAATGTGGCACTAGCACATGCCCGAGCCCAGGATGTGCACCGTG
20548285 GCTCAAACTCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCCTATGCCTA
711 GCTCAAACTCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCCTATGCCTA
20548350 AGCCAACCCACAAAACGGATGTGCGGGAGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAG
776 AGCCAACCCACAAAACGGATGTGCGGGAGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAG
20548415 GATCGACCTGGTCCCCCCTACGTGCTGCAGATCCTGTTACCACAACCCTCGGTCTGATCCA
841 GATCGACCTGGTCCCCCCTACGTGCTGCAGATCCTGTTACCACAACCCTCGGTCTGATCCA
20548476 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
20548541 CCATGAAATGAGCGTGCGGACGCTCAGCCGACCAGAGAGGCAGGATGCGCAAGCCGAGGATCGAA
66 CCATGAAATGAGCGTGCGGACGCTCAGCCGACCAGAGAGG-AGGATGCGCAAG-CGAGGATCGAA
20548606 CGGGTGGTAGGTGGGTTCAAGAACATCTTCATATTTTTGCCATTCCAATGCCATTTTTATGGCTT
129 CGGGTGGTAGGTGGGTTCAAGAACATCTTCATA-TTTTGCCATTCCAATGCCATTTTTATGGCTT
20548671 GTAAATTCATACAATGGTCCCCTACGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCT
193 GTAAATTCATACAATGGTCCCCTACGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCT
20548736 ATTTTTCACGATTTTCAAAACTTTTTGTAGTTTGGGATTTTTTAAAATTTTTTTAGAAAGAGTTT
258 ATTTTTCACGATTTTCAAAAC-TTTTGTAGTTTGGGATTTTTTAAAATTTTTTTAGAAAGAGTTT
20548801 TGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAA
322 TGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAA
20548866 AAACTCGAAGTGGAGAAGATTTTGTGACCATTTTAAAAAAGTGTCCCCAGTTTTGACACTTTAAT
387 AAACTCGAAGTGGAGAAGATTTTGTGACCATTTTAAAAAAGTGTCCCCAGTTTTGACACTTTAAT
20548931 GGCTA-TGCTAGCAAA-CTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGATGTTT
452 GGCTATTGC-AGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGATGTTT
20548994 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGTA-ATCATGTCCGCACA
516 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTCCGCACA
20549057 CCCCCCGGCCCCCCCAATCGCTGGAACCCATAATGCCGTCGGTTAGGCTCTCTGACGATGCTCTG
581 CCCCCCGGCCCCCCCAATCGCTGGAACCCATAATGCCGTCGGTTAGGCTCTCTGACGATGCTCTG
20549122 GCGATGGTGCCCCGGGCGAAAAAAAATGTGGCCACTAGCACATGCCCGAGCCCAGGATGTGCACC
646 GCGATGGTG-CCCGGGCG-AAAAAAATGTGG-CACTAGCACATGCCCGAGCCCAGGATGTGCACC
20549187 GTGGCTCAAACTCTTAGACTGGGAAT-AACTCCGTATGCTTAGACATGGAATGAACTCCCTATGC
708 GTGGCTCAAACTCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCCTATGC
20549251 CTAAGCCAACCCACAAAACGGATGTGCGGGAGCTCAGCCGACCAGAGAGGCAG-ATGCGCAAGCC
773 CTAAGCCAACCCACAAAACGGATGTGCGGGAGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCC
20549315 GAGGATCGACCTGGTCCCCCCTACGTGCTGCAGATCCTGTTACCACAACCCTCGGTCTGATCCA
838 GAGGATCGACCTGGTCCCCCCTACGTGCTGCAGATCCTGTTACCACAACCCTCGGTCTGATCCA
20549379 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA-
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
*
20549443 CCATGAAATGAG-GTGCGGACGCTCAGCTGACCAGAGAGGAGGATGCGCAAGCGAGGATCGAACG
66 CCATGAAATGAGCGTGCGGACGCTCAGCCGACCAGAGAGGAGGATGCGCAAGCGAGGATCGAACG
20549507 GGTGGTA-GTGGGTTCAAGAACATCTTCATATTTTGCCATTCCAATGCCATTTTTATGGCTTGT-
131 GGTGGTAGGTGGGTTCAAGAACATCTTCATATTTTGCCATTCCAATGCCATTTTTATGGCTTGTA
*
20549570 AATTCATACAATGGT-CCCTACGCCTTCATGTGAAGTTTCGTGGCAAGATGACCCGTTTTCTATT
196 AATTCATACAATGGTCCCCTACGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTATT
*
20549634 TTTCACGATTTTCAAAACTTTTGTAGTTT-GGATTTTTTAAAATTTTTTTAG-AAGATTTTTGTC
261 TTTCACGATTTTCAAAACTTTTGTAGTTTGGGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGTC
* * * * *
20549697 CCCAAA-TTGGTAGAGGTGAT-CTTGGGATTCTTTTTGGGATGCACCAAAAAAATTTA-TTCAAA
326 CCCAAATTTGGTAGAGGTGATCCTT-GTATTTTTTTTGGTATGCA-CAAAAAAATTCAGCT-AAA
* * *
20549759 AACAT-GAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCA-TTTGAGACACTTTAA
388 AAC-TCGAAGTGGAGAAGATTTTGTGACCATTTTAAAAAAGTGTCCCCAGTTT-TGACACTTTAA
*
20549822 AGGCTATTGGCAGCAAACCTATAAAATCTC
451 TGGCTATT-GCAGCAAACCTATAAAATCTC
20549852 TGGAGAGGCC
Statistics
Matches: 1330, Mismatches: 31, Indels: 42
0.95 0.02 0.03
Matches are distributed among these distances:
890 3 0.00
891 34 0.03
892 90 0.07
893 30 0.02
894 25 0.02
895 66 0.05
896 15 0.01
897 33 0.02
898 23 0.02
899 20 0.02
900 12 0.01
901 26 0.02
902 100 0.08
903 155 0.12
904 193 0.15
905 70 0.05
906 433 0.33
907 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (901 bp):
ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
CCATGAAATGAGCGTGCGGACGCTCAGCCGACCAGAGAGGAGGATGCGCAAGCGAGGATCGAACG
GGTGGTAGGTGGGTTCAAGAACATCTTCATATTTTGCCATTCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCCTACGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTATT
TTTCACGATTTTCAAAACTTTTGTAGTTTGGGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGTC
CCCAAATTTGGTAGAGGTGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAAC
TCGAAGTGGAGAAGATTTTGTGACCATTTTAAAAAAGTGTCCCCAGTTTTGACACTTTAATGGCT
ATTGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGATGTTTGATGA
GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTCCGCACACCCCC
CGGCCCCCCCAATCGCTGGAACCCATAATGCCGTCGGTTAGGCTCTCTGACGATGCTCTGGCGAT
GGTGCCCGGGCGAAAAAAATGTGGCACTAGCACATGCCCGAGCCCAGGATGTGCACCGTGGCTCA
AACTCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
ACCCACAAAACGGATGTGCGGGAGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCG
ACCTGGTCCCCCCTACGTGCTGCAGATCCTGTTACCACAACCCTCGGTCTGATCCA
Found at i:20550108 original size:12 final size:12
Alignment explanation
Indices: 20550093--20550137 Score: 72
Period size: 12 Copynumber: 3.8 Consensus size: 12
20550083 ATGCTGTTGA
20550093 TCCTGCTGCTGG
1 TCCTGCTGCTGG
*
20550105 TCCTGCTGCTGA
1 TCCTGCTGCTGG
20550117 TCCTGCTGCTGG
1 TCCTGCTGCTGG
*
20550129 TCCTACTGC
1 TCCTGCTGC
20550138 CGCAACCCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.04, C:0.36, G:0.27, T:0.33
Consensus pattern (12 bp):
TCCTGCTGCTGG
Found at i:20550111 original size:24 final size:24
Alignment explanation
Indices: 20550084--20550137 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
20550074 CCCCACTGCA
*
20550084 TGCTGTTGATCCTGCTGCTGGTCC
1 TGCTGCTGATCCTGCTGCTGGTCC
20550108 TGCTGCTGATCCTGCTGCTGGTCC
1 TGCTGCTGATCCTGCTGCTGGTCC
*
20550132 TACTGC
1 TGCTGC
20550138 CGCAACCCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.06, C:0.31, G:0.28, T:0.35
Consensus pattern (24 bp):
TGCTGCTGATCCTGCTGCTGGTCC
Found at i:20551329 original size:159 final size:159
Alignment explanation
Indices: 20550999--20551406 Score: 414
Period size: 159 Copynumber: 2.6 Consensus size: 159
20550989 CTGGTTCGAT
** * * * * ** *
20550999 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAAGC-CACGAAACGAGCGTACGAGTGCTGA
1 CTTAGACAT-GGAATGAACTCACTACGCCTAAGCCAA-CAAACGAAACGAGCGTACGGGCCCTCA
* * * * *
20551062 GCCGACCGAAGAGGCATAATGCGCAAGCCTCGGGATTGGCCCAATCCCCCTTTGCGTGCTGCCGG
64 ACCGATCGGAGAGGCA-AATGCGCAAGCCTCGGGATTGGCCCAATCCCCCTTTGCGTGCTACCGA
*
20551127 TCCAGCTGCCACAACCCTCGGTTCGACTGGGG
128 TCCAGCTGCCACAACCCTCGGTTCGACTGGCG
* ** * *
20551159 CTTAGATATGGAATGAACTCACTACGCCTAAGCCAACCCATGAAACGGGCGTACGGGCCCTCAAC
1 CTTAGACATGGAATGAACTCACTACGCCTAAGCCAACAAACGAAACGAGCGTACGGGCCCTCAAC
* *
20551224 CGGTCGGAGAGGCAGAATGCGCAAG-CT-GAGGATTGGCCCGATCCTCCTCTTTG-G-GCTACCG
66 CGATCGGAGAGGCA-AATGCGCAAGCCTCG-GGATTGGCCCAATCC-CC-CTTTGCGTGCTACCG
* * * *
20551285 ATCCCGTTGCCACAACCGTTGGTTCGACTGGCG
127 ATCCAGCTGCCACAACCCTCGGTTCGACTGGCG
* * * * **
20551318 CTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACAAACGAAACGAGCGTACGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCACTACGCCTAAGCCAACAAACGAAACGAGCGTACGGGCCCTCAAC
*
20551383 CGATCGGAGAGGCAAATACGCAAG
66 CGATCGGAGAGGCAAATGCGCAAG
20551407 TCGGGGATCG
Statistics
Matches: 206, Mismatches: 37, Indels: 12
0.81 0.15 0.05
Matches are distributed among these distances:
158 10 0.05
159 117 0.57
160 73 0.35
161 6 0.03
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCACTACGCCTAAGCCAACAAACGAAACGAGCGTACGGGCCCTCAAC
CGATCGGAGAGGCAAATGCGCAAGCCTCGGGATTGGCCCAATCCCCCTTTGCGTGCTACCGATCC
AGCTGCCACAACCCTCGGTTCGACTGGCG
Found at i:20551868 original size:26 final size:26
Alignment explanation
Indices: 20551816--20551868 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20551806 CTAGTTCGAT
*
20551816 CTTAGACTGGGAATGAACTCTGGATG
1 CTTAGACTGGGAATGAACTCCGGATG
* *
20551842 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGGATG
20551868 C
1 C
20551869 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGGATG
Found at i:20552528 original size:25 final size:25
Alignment explanation
Indices: 20552500--20552550 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 25
20552490 CCGGTCTGAT
20552500 CTTAGA-TGGGAATGAACTCCGTATG
1 CTTAGACTGGG-ATGAACTCCGTATG
20552525 CTTAGACTGGGATGAACTCCGTATG
1 CTTAGACTGGGATGAACTCCGTATG
20552550 C
1 C
20552551 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCGTATG
Found at i:20554883 original size:159 final size:158
Alignment explanation
Indices: 20554730--20555025 Score: 364
Period size: 159 Copynumber: 1.9 Consensus size: 158
20554720 TTAGACTGGG
* * * * * * *
20554730 AATGAACTTCGTATGCCTAAGTCAACCCACAAAAC-GAGCGTACGGGCGCTGAGCTGGCC-GAAA
1 AATGAACTCCCTATGCCTAAGCCAACCCACAAAACAG-GCGTACGGGCGCTCAACCGACCAG-AA
* * * * *
20554793 AGGTATAATGCACAAGCCGCGGATCGGCCCGATCCCCTTCTGCGTGCTACC-AGTCCCGCTGCCA
64 AGGCAGAATGCACAAGCCGCGGATCAGCCCGAT-CCCTCCTGCGTGCTACCGA-TCCCGCTACCA
20554857 CAACCCTCGATCCAGCTAGGGCTTAGACATGA
127 CAACCCTCGATCCAGCTAGGGCTTAGACATGA
* * *
20554889 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAACCGACCAGAGAG
1 AATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCGTACGGGCGCTCAACCGACCAGAAAG
* * * *
20554954 GCAGAATGCACAAGCCGGGGATTAGCCCGATCCCTCCTGCGTGCTGCCGATCCTGCTACCACAAC
66 GCAGAATGCACAAGCCGCGGATCAGCCCGATCCCTCCTGCGTGCTACCGATCCCGCTACCACAAC
20555019 CCTCGAT
131 CCTCGAT
20555026 TTGGTCCGAT
Statistics
Matches: 115, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
158 35 0.30
159 78 0.68
160 2 0.02
ACGTcount: A:0.26, C:0.34, G:0.24, T:0.16
Consensus pattern (158 bp):
AATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCGTACGGGCGCTCAACCGACCAGAAAG
GCAGAATGCACAAGCCGCGGATCAGCCCGATCCCTCCTGCGTGCTACCGATCCCGCTACCACAAC
CCTCGATCCAGCTAGGGCTTAGACATGA
Found at i:20557009 original size:158 final size:155
Alignment explanation
Indices: 20556508--20557009 Score: 402
Period size: 158 Copynumber: 3.2 Consensus size: 155
20556498 ACTCCATATG
* *
20556508 CTTAGACATGGAATGAACTCAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-TGGCGCTCAGC
* ** * ** * * * *
20556573 CGGGTGGAGAGGCAAAATGTGCAAG-TCAAGGACCGGCCCAGTCCCCCCTGCGTGCTGTCGATTC
65 C-AGCAGAGAGGCAAAATGCGCAAGCTGGA-GAACGGCCGA-TCCCCTCTGCGTGCTGTCGATCC
* * *
20556637 TGCTACCGCAACGCTCGGTCCAATCTGAT
127 TGCTACCGCAACCCTCGGTCCGATCCGAT
* * * * *
20556666 CTTAGAC-TAGGAATGAACTCCGCATGCCTTAGTCAACCCACGAAACGAGCAT-TCAGGCACTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGT--GGCGCTCA
* * * * * * * * * ** *
20556729 GCCGATCAGAGAGGCATAATGCACAAGCCGGGGATCGACCTGGTCCCTCTCTGCGCGCTACCAAT
63 GCC-AGCAGAGAGGCAAAATGCGCAAGCTGGAGAACGGCC-GATCCC-CTCTGCGTGCTGTCGAT
* * * * **
20556794 CCCGCTGCCACAACCCTCGGTCCAGCTTGGAT
125 CCTGCTACCGCAACCCTCGGTCC-GATCCGAT
* * * * *
20556826 -TTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGTTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGG-CGCTCAGC
* * *
20556890 CAGCCGAAGAGGCAGAATGCGCAAGCTGGAGAACGGCACGATCCCCTCTGCGTACTGTCGATCCT
65 CAGCAG-AGAGGCAAAATGCGCAAGCTGGAGAACGGC-CGATCCCCTCTGCGTGCTGTCGATCCT
* *
20556955 ACTACCGCAACCCTCGGTTCGATCCGAT
128 GCTACCGCAACCCTCGGTCCGATCCGAT
20556983 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
20557010 TTAGACTAGG
Statistics
Matches: 260, Mismatches: 70, Indels: 28
0.73 0.20 0.08
Matches are distributed among these distances:
157 7 0.03
158 139 0.53
159 107 0.41
160 7 0.03
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGCGCTCAGCC
AGCAGAGAGGCAAAATGCGCAAGCTGGAGAACGGCCGATCCCCTCTGCGTGCTGTCGATCCTGCT
ACCGCAACCCTCGGTCCGATCCGAT
Found at i:20557012 original size:26 final size:26
Alignment explanation
Indices: 20556983--20557035 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20556973 TCGATCCGAT
*
20556983 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCATATG
20557009 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
20557035 C
1 C
20557036 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:20557384 original size:184 final size:184
Alignment explanation
Indices: 20557192--20557610 Score: 500
Period size: 184 Copynumber: 2.3 Consensus size: 184
20557182 TCTGGCTGGG
* *
20557192 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGACACTCAG
* * **** *
20557257 -TCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTTGGTCCCCCCTGCGTGCTACCGATC
66 CT-GACCAGAGAGGCAGAATACGCAAGCCAGGGATCAGCCCAATCCACCCTGCGTGCTACCGATC
* * *
20557321 CTGCTACCGCAACCCTTGATCCGGTTCGATCTTAGATTGGGAATGAACTCCGTAT
130 CTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* ** * *
20557376 GGTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGACACTCAG
* ** * * * * **
20557441 CTGGCTGGAGAGGCAGAATATGCAAGCCGGGGATCAGCCCAATCCACCTTGTGTGCTGTCGATCC
66 CTGACCAGAGAGGCAGAATACGCAAGCCAGGGATCAGCCCAATCCACCCTGCGTGCTACCGATCC
** * * *
20557506 TGCTATTGTAACCCTCGGTCCGGTCCGATCTTCGACTGGGAATGAACTCCGTAT
131 TGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
20557560 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCGCAAAACGAGC
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGC
20557611 TTGCGGGTGC
Statistics
Matches: 196, Mismatches: 37, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
183 1 0.01
184 194 0.99
185 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGACACTCAG
CTGACCAGAGAGGCAGAATACGCAAGCCAGGGATCAGCCCAATCCACCCTGCGTGCTACCGATCC
TGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:20557874 original size:552 final size:559
Alignment explanation
Indices: 20556826--20557967 Score: 1316
Period size: 552 Copynumber: 2.0 Consensus size: 559
20556816 CAGCTTGGAT
* * * * * ***
20556826 TTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGTTGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGCC
* * * *
20556891 AGCCGAAGAGGCAGAATGCGCAAGCTGGAGAACGGCACGATCCCCTCTGCGTACTGTCGATCCTA
66 AGCCGAAGAGGCAGAATACGCAAGCCGGAGAACAGCACAATCCCCTCTGCGTACTGTCGATCCTA
*
20556956 CTACCGCAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGG
131 CTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGG
** * * ** *
20557021 ATGAACTCCATATGCCTAAGTCAACCCATGAAAGGAGCGTACGGGCATTTAGCCAACTGGAGAGG
196 ATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACTTAGCCAACCAGAGAAG
** * * *
20557086 TCAGCCAGAGAGGCATAATGCGTAAGTCGAGGATCAGCCCGATCCCCTTCTAAGTGCTACCGATC
261 TCAGCCAGAGAGGCATAATGCACAAGTCGAGGATCAGCCCAACCCCCCTCTAAGTGCTACCGATC
* ** * * * * *
20557151 CAGTTGTCGGTCCTACTGCCACACCCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGT
326 CAGCTACCGGTCCTACTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGCAATGAACTCCGT
20557216 ATGCCTAAGCCAACCCACAAAACGAGCGTACGGACGCTCAGTCGACCAGAGAGGCAGAATGCGCA
391 ATGCCTAAGCCAACCCACAAAACGAGCGTACGGACGCTCAGTCGACCAGAGAGGCAGAATGCGCA
* * * *
20557281 AGCCAGGGATCGGCTTGGTCCCCCCTGCGTGC-T--A-CC-G-A-TCCTGCTACCGCAACCCTTG
456 AGCCAGGGATCGGCCTGGTCCCCACTGCATGCGTCAACCCTGCACTCCTGCTACCGCAACCCTCG
* * * * *
20557339 ATCCGGTTCGATCTTAGATTGGGAATGAACTCCGTATGG
521 ATCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGC
* *
20557378 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGCT
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGCC
* * * * * * * * *
20557443 GGCTGGAGAGGCAGAATATGCAAGCCGGGGATCAGCCCAATCCACCT-TGTGTGCTGTCGATCCT
66 AGCCGAAGAGGCAGAATACGCAAGCCGGAGAACAGCACAATCC-CCTCTGCGTACTGTCGATCCT
* ** * * * *
20557507 GCTATTGTAACCCTCGGTCCGGTCCGATCTTCGACTGGGAATGAACTCCGTATGCTTAGACTGGG
130 ACTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGG
* * * * ** * **
20557572 GATGAACTCCGTATGCCTAAGTCAACCCGCAAAACGAGCTTGCGGGTGCTTAGTCGGCCAGAGAA
195 GATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACTTAGCCAACCAGAGAA
* * * * ** * **
20557637 G-CCGTTCGGAGAGGCATAATGCACAAG-CTGAGGATTAGCCCAACCCCCCTCTGCGTGTTGTCG
260 GTCAG-CCAGAGAGGCATAATGCACAAGTC-GAGGATCAGCCCAACCCCCCTCTAAGTGCTACCG
*
20557700 ATTCCA-CTACCGGTCCTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGCAATGAACT
323 A-TCCAGCTACCGGTCCTACTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGCAATGAACT
** * ** *
20557764 CCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACGCTCAGTCGGTCGGAGAGGCAGAATG
387 CCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGACGCTCAGTCGACCAGAGAGGCAGAATG
* * * *
20557829 TGCAAGCCGGGGATCGGCCTGGTCCCCACTGCATGCTGTCGATCCTGCTACCGGTCCTGCTACCG
452 CGCAAGCCAGGGATCGGCCTGGTCCCCACTGCATGC-GTCAACCCTGC-A-C--TCCTGCTACCG
*
20557894 CAACCCTCGATCCGGTCCGATCTTAGACTATGAATGAACTCCATATGC
512 CAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGC
20557942 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
20557968 TTAGACATGG
Statistics
Matches: 486, Mismatches: 88, Indels: 20
0.82 0.15 0.03
Matches are distributed among these distances:
551 3 0.01
552 392 0.81
553 7 0.01
554 1 0.00
556 1 0.00
557 2 0.00
558 1 0.00
560 1 0.00
564 78 0.16
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (559 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGCC
AGCCGAAGAGGCAGAATACGCAAGCCGGAGAACAGCACAATCCCCTCTGCGTACTGTCGATCCTA
CTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGG
ATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACTTAGCCAACCAGAGAAG
TCAGCCAGAGAGGCATAATGCACAAGTCGAGGATCAGCCCAACCCCCCTCTAAGTGCTACCGATC
CAGCTACCGGTCCTACTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGCAATGAACTCCGT
ATGCCTAAGCCAACCCACAAAACGAGCGTACGGACGCTCAGTCGACCAGAGAGGCAGAATGCGCA
AGCCAGGGATCGGCCTGGTCCCCACTGCATGCGTCAACCCTGCACTCCTGCTACCGCAACCCTCG
ATCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGC
Found at i:20557990 original size:26 final size:26
Alignment explanation
Indices: 20557915--20557993 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
20557905 CCGGTCCGAT
*
20557915 CTTAGACTAT-GAATGAACTCCATATG
1 CTTAGAC-ATGGAATGAACTCCGTATG
20557941 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
* *
20557967 CTTAGACATGGAATCAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
20557993 C
1 C
20557994 CTAAGCCAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
25 2 0.04
26 47 0.96
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20558322 original size:159 final size:157
Alignment explanation
Indices: 20557966--20558329 Score: 383
Period size: 158 Copynumber: 2.3 Consensus size: 157
20557956 AACTCCGTAT
* * *
20557966 GCTTAGACATGGAATCAACTTCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCACTCAG
* * * * *
20558031 TCGGTCGGAGAGGCAGAATGCGTAAGTCAGGGATCGGCCCAATCCCCCCTGCGTGCTGTCGATCC
66 CCGATCGGAGAGGCAGAATGCGCAAGTCAGGGATCAGCCCAATCCCCCCTACGTGCTGTCGATCC
* * * *
20558096 TGCTACCGCAACCCTCCGTTGGGTCTGA
131 CGCTACCACAACCCTACGTT-GGACTGA
* * ** *
20558124 TCTTAGAC-TAGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCACTCA
* * * ** * *
20558188 GCCGATTGGAGAGGCATAATGTGCAAG-CAGGGGATCAGCCCGGTCCCCCTCTACGTGTTGTCGG
65 GCCGATCGGAGAGGCAGAATGCGCAAGTCA-GGGATCAGCCCAATCCCCC-CTACGTGCTGTCGA
* * * *
20558252 TCCCGCTGCCATAACCCTAGGTCT-GACTGGG
128 TCCCGCTACCACAACCCTACGT-TGGACT-GA
* *
20558283 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAT
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAAT
20558330 AGGCATGCAG
Statistics
Matches: 168, Mismatches: 32, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
157 3 0.02
158 94 0.56
159 69 0.41
160 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCACTCAG
CCGATCGGAGAGGCAGAATGCGCAAGTCAGGGATCAGCCCAATCCCCCCTACGTGCTGTCGATCC
CGCTACCACAACCCTACGTTGGACTGA
Found at i:20558350 original size:159 final size:157
Alignment explanation
Indices: 20558125--20558426 Score: 353
Period size: 159 Copynumber: 1.9 Consensus size: 157
20558115 TGGGTCTGAT
* * * *
20558125 CTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGTTGAGC
1 CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCATACGGGCGTTGAGC
* * * * * *
20558190 CGATTGGAGAGGCATAATGT-GCAAGCAGGGGATCAGCCCGGTCCCCCTCTACGTGTTGTCGGTC
66 CGA-CGGAGAGACAGAAT-TCGCAAGCAGGGGATCAGCACGGT-CCCCTCTACGTGCTGTCGATC
*
20558254 CCGCTGCCATAACCCTAGGTCTGACTGGGG
128 CCACTGCCATAACCCTAGGTCTGACTGGGG
*
20558284 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAT-AGGCATGCAGGTGC-TT
1 CTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGA-GCATAC-GG-GCGTT
* * *
20558346 -AGCCGACGGAGAGACAGAATTCGTAAGCCGGGGATCGGCACGGTCCCCTCTACGTGCTGTCGAT
62 GAGCCGACGGAGAGACAGAATTCGCAAGCAGGGGATCAGCACGGTCCCCTCTACGTGCTGTCGAT
* *
20558410 CCTACTGCCGTAACCCT
127 CCCACTGCCATAACCCT
20558427 CAATCCGGTC
Statistics
Matches: 121, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
157 33 0.27
158 31 0.26
159 51 0.42
160 4 0.03
161 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCATACGGGCGTTGAGC
CGACGGAGAGACAGAATTCGCAAGCAGGGGATCAGCACGGTCCCCTCTACGTGCTGTCGATCCCA
CTGCCATAACCCTAGGTCTGACTGGGG
Found at i:20559198 original size:26 final size:26
Alignment explanation
Indices: 20559160--20559212 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20559150 GGCTTAAAAT
20559160 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20559186 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
20559212 C
1 C
20559213 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20559387 original size:26 final size:26
Alignment explanation
Indices: 20559356--20559460 Score: 174
Period size: 26 Copynumber: 4.0 Consensus size: 26
20559346 TCGGTCCGAT
*
20559356 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
* **
20559382 CATAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
20559408 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
20559434 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
20559460 C
1 C
20559461 CTAAGTCAAC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:20560326 original size:26 final size:26
Alignment explanation
Indices: 20560275--20560327 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20560265 CTGGTCTGAT
*
20560275 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20560301 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
20560327 C
1 C
20560328 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20560657 original size:159 final size:156
Alignment explanation
Indices: 20560300--20560746 Score: 459
Period size: 159 Copynumber: 2.8 Consensus size: 156
20560290 AACTTCATAT
* * *
20560300 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTACGGGCGCTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTTCGGGCACTCAG
* * * * *
20560365 CCGGCCGGAGAGGCAGAATGCTCAAGCCGGGGACCGATTCGGTCCCCCCTGCGTGTTGTCGATCC
65 CCGGCCGGAGAGGCAGAATGCACAAGCC-GGGATCGACTCGGTCCCCCCTGCATGCTGTCGATCC
** *
20560430 TGCTACCGCAACCCTCGGTCCAGTCCGA
129 CACTACCACAACCCTCGGTCCAGTCCGA
* * *
20560458 TCTTAGACTAGGAATGAACTCCGTATGCCTAA-CTCAACCCACT-AAATGAGCGTTCGGGCACTG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGC-CAACCCA-TAAAACGAGCGTTCGGGCACTC
* * * * *
20560521 AGTCGGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGACTCGGACCCCCTCTGCATGCTGTCGA
63 AGCCGGCCGGAGAGGCAGAATGCACAAGCC-GGGATCGACTCGGTCCCCC-CTGCATGCTGTCGA
* * ** ** *
20560586 TCCCACTGCCACAACCCTCGTTTGAGTTGGG
126 TCCCACTACCACAACCCTCGGTCCAGTCCGA
* * * * * *
20560617 GCTTTGACGTGGAATGAACTCCCTATGGCTAAGCCAACCCATGAAACGGGTGTGT-GGGCACTCA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGT-TCGGGCACTCA
* * * *
20560681 GCCGGCCGGAGAGGTAGAATGCACAAGCCGACGATCGGCCCGGTCCCCCCTGCATGCTGTCGATC
64 GCCGGCCGGAGAGGCAGAATGCACAAGCCG-GGATCGACTCGGTCCCCCCTGCATGCTGTCGATC
20560746 C
128 C
20560747 TGCTGTCGCA
Statistics
Matches: 237, Mismatches: 43, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
157 2 0.01
158 112 0.47
159 120 0.51
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTTCGGGCACTCAGC
CGGCCGGAGAGGCAGAATGCACAAGCCGGGATCGACTCGGTCCCCCCTGCATGCTGTCGATCCCA
CTACCACAACCCTCGGTCCAGTCCGA
Found at i:20561521 original size:26 final size:26
Alignment explanation
Indices: 20561485--20561537 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20561475 CAGGTCTGAT
20561485 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
20561511 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
20561537 C
1 C
20561538 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:20561652 original size:709 final size:708
Alignment explanation
Indices: 20560220--20561591 Score: 1611
Period size: 709 Copynumber: 1.9 Consensus size: 708
20560210 TCCCCCCCTA
* * * * * * **
20560220 CGTGCTACCGATCCTATTGCTGGTCCTAC-TGC-CATAACTCTCGGTCTGGTCTGATCTTAGACT
1 CGTGCTACCGATCCTACTACTGGTCCTACAGGCGCA-ATC-CTCAGTCCGGTCCAATCTTAGACT
* *
20560283 GGGAATGAACTTCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACG
64 GGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACG
* * * * *
20560348 AGCGTACGGGCGCTCAACCGGCCGGAGAGGCAGAATGCTCAAGCCGGGGACCGATTCGGTCCCCC
129 AGCGTACGGGCGCTCAACCGGCCGAAGAGGCAAAATGCTCAAGCCGAGGACCGACTCAGTCCCCC
* * * * *
20560413 CTGCGTGTTGTCGATCCTGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACT
194 CTGCGTGCTGTCAATCCTACTACCGCAACCCTCAGTCCAGTCCGATATTAGACTAGGAATGAACT
* * *
20560478 CCGTATGCCTAACTCAACCCACTAAATGAGCGTTCGGGCACTGAGTCGGTCGGAGAGGCATAATG
259 CCGTATGCCTAACTCAACCCACAAAATGAGCGTTCGGGCACTGAGCCGGTCGGAGAGGCATAATA
* *
20560543 CGCAAGCCAGGGATCGACTCGGACCCCCTCTGCATGCTGTCGATCCCACTGCCACAACCCTCGTT
324 CGCAAGCCAGGGATCGACTCGGACCCCCTCTACATGCTGTCGATCCCACTGCCACAACCCTCGTC
* * * * ** * *
20560608 TGAGTTGGGGCTTTGACGTGGAATGAACTCCCTATGGCTAAGCCAACCCATGAAACGGGTGTGTG
389 TGAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACCAAACGGGCGTGCG
* * * *
20560673 GGCACTCAGCCGGCCGGAGAGGTAGAATGCACAAGCCGACGATCGGCCCGGTCCCCCCTGCATGC
454 GGCACTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCGAAGATCGGCCCAGTCCCCCCTACATGC
** * * * * *
20560738 TGTCGATCCTGCTGTCGCATCCTTCGATTCGGTTCATTCTTAGACTGGGAATGAACTCCGTATGC
519 TACCGATCCTACTATCGCAACCTTCGAGTCGGTTCATTCTTAGACTGGGAATGAACTCCATATGC
* ** *
20560803 TTAGACTAGGGATAACTCCAGATGCCTAAGTCAACCCATGAAACGAGCTTACGGATGCTCAACCG
584 TTAGACTAGGGATAACTCCAGATGCCTAAGTAAACCCACAAAACGAGCTTACGGACGCTCAACCG
* * * * *
20560868 ACCGGAGAGGCCTACAAGAGAGGCAGAATGCATAAACCGATGATCAGCCTGATCCCCACTG
649 ACCGGAGAAGCATACAAGACAAGCAGAATGCATAAACCGA-GATCACCCTGATCCCCACTG
**
20560929 CGTGCTGTCGATCCTACTACTGGTCCTACAGGCGCAATCCTCAGTCCGGTCCAATCTTAGACTGG
1 CGTGCTACCGATCCTACTACTGGTCCTACAGGCGCAATCCTCAGTCCGGTCCAATCTTAGACTGG
* * * *
20560994 GAATGAACTCCTTATGCTTAGACATGGAATGAACTCTGTATGCGTAAGCTAACCCACAAAACGAG
66 GAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAG
* * * * * *
20561059 CGTGCGGGTGCTCAACTGGTCGAAGAGGCAAAATGGT-AAGCCGAGGACCGGC-CTAGTCCCCCC
131 CGTACGGGCGCTCAACCGGCCGAAGAGGCAAAATGCTCAAGCCGAGGACCGACTC-AGTCCCCCC
* * * * *
20561122 TTGCGTGCTGTCAATCCTACTGCTGCAACCCTCAGTCC-GATCTGGTATTAGACTGGGAATGAAC
195 -TGCGTGCTGTCAATCCTACTACCGCAACCCTCAGTCCAG-TCCGATATTAGACTAGGAATGAAC
* ***
20561186 TCCGTATGCCTAAGTCAACCCACAAAATGAGCGTTCGGGTGTTGAGCCGG-CTGGAGAGGCATAA
258 TCCGTATGCCTAACTCAACCCACAAAATGAGCGTTCGGGCACTGAGCCGGTC-GGAGAGGCATAA
* * * * * * ***
20561250 TATGCAAGCC-GAGGATTGGC-CTGGTCCCCCTCTACGTGCTGTCGGTCTTGCTGCCACAACCCT
322 TACGCAAGCCAG-GGATCGACTC-GGACCCCCTCTACATGCTGTCGATCCCACTGCCACAACCCT
* *
20561313 CGGTCT-AGCTGGGGCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCACCAAATGGGC
385 C-GTCTGAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACCAAACGGGC
** * *
20561377 GTGCGGGCACTCAGCCGGTTGGAGAGGCAGAATGCGCAAGCCGAAGATCGGCCCAGTCCCCCTTA
449 GTGCGGGCACTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCGAAGATCGGCCCAGTCCCCCCTA
* *
20561442 CGTGCTACCGATCCTACTATCGCAACAC-TCG-GTCAGGTCTGA-TCTTAGACTGGGAATGAACT
514 CATGCTACCGATCCTACTATCGCAAC-CTTCGAGTC-GGT-TCATTCTTAGACTGGGAATGAACT
* * * * *
20561504 CTATATGCTTAGACTGGGGATGAACT-CTGTATGCCTAAGTAAACCCACAAAATGAG-TGTGCGG
576 CCATATGCTTAGACTAGGGAT-AACTCCAG-ATGCCTAAGTAAACCCACAAAACGAGCT-TACGG
* * *
20561567 GCGCTCAGCCGGCCGGAGAAGCATA
638 ACGCTCAACCGACCGGAGAAGCATA
20561592 ATGCACAAGC
Statistics
Matches: 552, Mismatches: 96, Indels: 29
0.82 0.14 0.04
Matches are distributed among these distances:
707 1 0.00
708 26 0.05
709 464 0.84
710 59 0.11
711 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (708 bp):
CGTGCTACCGATCCTACTACTGGTCCTACAGGCGCAATCCTCAGTCCGGTCCAATCTTAGACTGG
GAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAG
CGTACGGGCGCTCAACCGGCCGAAGAGGCAAAATGCTCAAGCCGAGGACCGACTCAGTCCCCCCT
GCGTGCTGTCAATCCTACTACCGCAACCCTCAGTCCAGTCCGATATTAGACTAGGAATGAACTCC
GTATGCCTAACTCAACCCACAAAATGAGCGTTCGGGCACTGAGCCGGTCGGAGAGGCATAATACG
CAAGCCAGGGATCGACTCGGACCCCCTCTACATGCTGTCGATCCCACTGCCACAACCCTCGTCTG
AGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACCAAACGGGCGTGCGGG
CACTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCGAAGATCGGCCCAGTCCCCCCTACATGCTA
CCGATCCTACTATCGCAACCTTCGAGTCGGTTCATTCTTAGACTGGGAATGAACTCCATATGCTT
AGACTAGGGATAACTCCAGATGCCTAAGTAAACCCACAAAACGAGCTTACGGACGCTCAACCGAC
CGGAGAAGCATACAAGACAAGCAGAATGCATAAACCGAGATCACCCTGATCCCCACTG
Found at i:20561870 original size:171 final size:166
Alignment explanation
Indices: 20561511--20562352 Score: 587
Period size: 158 Copynumber: 5.2 Consensus size: 166
20561501 ACTCTATATG
* * ** *
20561511 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTAAACCCACA-AAATGAGTGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCA-AGAAATGAGCGTGCGGGCGCTCAG
* * * * * * * * *
20561575 CCGGCCGGAGAAGCATAATGCACAAGCCGAGGATCTA-TCGGTCCCCCTCTGCGTGCTGTTGATC
65 CCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCCCTGCGTGCTGCT-AT-
* * * **
20561639 CCGCTACCGATCCTGCTGCCACAACCCTCGGTCTGGTTGGGG
128 -CGCT--CGATCCTGCTACCACAACCCTCGGTCCGGTTCGAT
* *
20561681 CTTAAACAT-GGAATGAACTCCGTATGCCTAAGCCAACCTAAGAAATGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGGCGCTCAG
* * * *
20561745 CCTGCCAGAGAGGCAAAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCCTGCGTGCTGCTAATC
65 CCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCCCTGCGTGCTGCT-ATC
* * *
20561810 TTGCTGCTGGTCCTGCTACCGCAACCCTCAGTCCGGTTCGAT
129 --GCT-C-GATCCTGCTACCACAACCCTCGGTCCGGTTCGAT
* ** * ** *
20561852 CCTAGACTGGGAATGAACTATGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGGCGCTCAGC
* * * * * *
20561917 TGGCCAGAGAGGTAGAATGCGCAAGCCAGGGACCGACCCGAT-CCCCCCTAC--G-TGC---CG-
66 CGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCCCTGCGTGCTGCTATCGC
* * * *
20561974 TCGATCCTACTACCATAACCCTCGGTCC-GATCTAAT
131 TCGATCCTGCTACCACAACCCTCGGTCCGGTTC-GAT
* * * * * * *
20562010 CTTAGACTAGGATTGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCAGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGGCGCTCAGC
* *
20562075 CGGCC-GAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGAT--CCCCCT-C-TGCATGCTACC
66 CGGCCAG-AGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCCCTGCGTGC-TGCTATC
* * * * * * **
20562135 GGTC--T-C-GTTGCCACAACCCTCCGTCCGGCTGGGG
129 GCTCGATCCTGCTACCACAACCCTCGGTCCGGTTCGAT
* * * * * * *
20562169 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAA-CCACGAAATGGGCATGTGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGGCGCTCAG
* * * *
20562232 CCGGCCCGAGAGGTAGAATGCGCAAGCCGGGTATCGACCCGAT---CCCCT-CGATG-TGC--T-
65 CCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCCCTGCG-TGCTGCTATC
** ** * *
20562289 G-TCGATCCTATTGTCGCAACCCTCGGTCCGGTCCGAT
129 GCTCGATCCTGCTACCACAACCCTCGGTCCGGTTCGAT
*
20562326 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
20562353 TTAGACCGGG
Statistics
Matches: 535, Mismatches: 111, Indels: 65
0.75 0.16 0.09
Matches are distributed among these distances:
153 2 0.00
154 1 0.00
155 1 0.00
156 3 0.01
157 62 0.12
158 165 0.31
159 53 0.10
160 5 0.01
161 2 0.00
162 2 0.00
163 3 0.01
167 3 0.01
168 1 0.00
169 2 0.00
170 91 0.17
171 139 0.26
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (166 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGGCGCTCAGC
CGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCCCTGCGTGCTGCTATCGC
TCGATCCTGCTACCACAACCCTCGGTCCGGTTCGAT
Found at i:20562367 original size:26 final size:26
Alignment explanation
Indices: 20562326--20562378 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20562316 CCGGTCCGAT
* *
20562326 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACCGGGAATGAACTTCATATG
*
20562352 CTTAGACCGGGGATGAACTTCATATG
1 CTTAGACCGGGAATGAACTTCATATG
20562378 C
1 C
20562379 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTTCATATG
Found at i:20563002 original size:158 final size:158
Alignment explanation
Indices: 20562771--20563068 Score: 352
Period size: 158 Copynumber: 1.9 Consensus size: 158
20562761 GTATGCCTAT
* * * * * * *
20562771 ACATGGAATGAACTCCGTATGCCTATGCCAGCCCACGAAACAAGCGTGCGGGTGCTCAATCAGCC
1 ACATGGAATGAACTCCCTATGCCGAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACCAACC
* * * * * *
20562836 GGAGAGGCAAAATACGTAAGCC-AGGGATTGGCCCAGTC-CCCCTCTACGTGTTGCC-AGTCCTG
66 AGAAAGGCAAAATACGTAAGCCGA-GGATCGGCCCAATCTCCCCTCT--GTGCTGCCGA-TCCTA
20562898 CTGCCACAACCCTCAGTCCAGCTGGGGCTTAG
127 CTGCCACAACCCTCAGTCCAGCTGGGGCTTAG
** * *
20562930 ACATGGAATGAACTCCCTA-GCCGAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCAATC
1 ACATGGAATGAACTCCCTATGCCGAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACCAACC
* * *
20562994 AGAAAGGCAGAATGCGTAAGCCGAGGATCGGCCCAATCTCCCCTGTGTGCTGCCGATCCTACTGC
66 AGAAAGGCAAAATACGTAAGCCGAGGATCGGCCCAATCTCCCCTCTGTGCTGCCGATCCTACTGC
20563059 CACAACCCTC
131 CACAACCCTC
20563069 GATCCGATTC
Statistics
Matches: 116, Mismatches: 20, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
157 25 0.22
158 66 0.57
159 25 0.22
ACGTcount: A:0.25, C:0.33, G:0.26, T:0.16
Consensus pattern (158 bp):
ACATGGAATGAACTCCCTATGCCGAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACCAACC
AGAAAGGCAAAATACGTAAGCCGAGGATCGGCCCAATCTCCCCTCTGTGCTGCCGATCCTACTGC
CACAACCCTCAGTCCAGCTGGGGCTTAG
Found at i:20563364 original size:26 final size:26
Alignment explanation
Indices: 20563289--20563367 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
20563279 CCGATCCAAT
* *
20563289 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCGTATG
20563315 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
20563341 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
20563367 C
1 C
20563368 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:20564080 original size:183 final size:185
Alignment explanation
Indices: 20563664--20564089 Score: 484
Period size: 185 Copynumber: 2.3 Consensus size: 185
20563654 CTGCTGCTGT
* * * * * * *
20563664 TCCTGCTGCAGCAACCCTTGGTCCGGTCCAATCTTAGACTGGGAA-AAACTCCGTATGCTTAGAC
1 TCCTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCATAGAC
* * * * * * *
20563728 ATTGAATGAACTCTGTATGCCTAAGCCAACCTATGAAACAAGCGTGCGGGCGCTCAGCTGGTCGA
66 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCACAGCTGATCGA
* * * *
20563793 AGAGGCAGAATTCGTAAGCCAGGGACCGACCAGGTCCACCCCTGCGTGCTGTCGA
131 AGAGGCAGAATACGTAAGCCAGGGACCGACCAGATCCACCCCTACGTGCTATCGA
* * * *
20563848 TCCTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCATATGCATAGAC
1 TCCTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCATAGAC
* **
20563913 ATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAAGGAGCGTACGGGCGCACAG-TCGATCG
66 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCACAGCT-GATCG
* * * *
20563977 AAGAGGTAGAATACGTAAGTC-GAGGA-TGACCCGATCC-CCCCTACGTGCTATCGA
130 AAGAGGCAGAATACGTAAGCCAG-GGACCGACCAGATCCACCCCTACGTGCTATCGA
* * *** *
20564031 TCCTGCTATCGCAACCCTCAGTCTGGTCCAATCTTAGACCAAGAATGAACTTCATATGC
1 TCCTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGC
20564090 CTAAGTCAAC
Statistics
Matches: 202, Mismatches: 37, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
183 64 0.32
184 49 0.24
185 89 0.44
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (185 bp):
TCCTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCATAGAC
ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCACAGCTGATCGA
AGAGGCAGAATACGTAAGCCAGGGACCGACCAGATCCACCCCTACGTGCTATCGA
Found at i:20564431 original size:26 final size:26
Alignment explanation
Indices: 20564380--20564432 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20564370 CCGATCCAAT
* * *
20564380 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20564406 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20564432 C
1 C
20564433 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20565462 original size:26 final size:26
Alignment explanation
Indices: 20565433--20565485 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20565423 CTGACTTGAT
*
20565433 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
20565459 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20565485 C
1 C
20565486 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20565900 original size:210 final size:210
Alignment explanation
Indices: 20565537--20565923 Score: 526
Period size: 210 Copynumber: 1.8 Consensus size: 210
20565527 TTGGAAAGGC
* ** * * * *
20565537 AGAATGCGTAAGCCGGGGATCGGCCCGATCCCTCCCTGCATGCTGTCGATCCTACTGTTGGTCCT
1 AGAATGCGCAAGCCAAGGATCAGCCCGATCCCTCCCTACATGCTGTCAATCCTACTGCTGGTCCT
* * * * * *
20565602 GCTGCTGCAACCCTCGGTCTGGTATGATCTTAGATTGGGAATGAACTCTATATGCTTAGACATGA
66 GCTCCTGCAACCCTCAGTCCGGTATGATCTTACACTGGGAATGAACTCCATATGCTTAGACATGA
* * * *
20565667 AATGAACTCCGTATGCTTAAGCCAACCCATGAAATGAGCGTACGGGCAATCAACCGGTTAGAGAA
131 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGCAATCAACCGGTTAGAGAA
20565732 ACCGGCTGAAGAGGT
196 ACCGGCTGAAGAGGT
* **
20565747 AGAATGCGCAAGCCAAGGATCAGCCCGATCCCTCCCTACGTGCTG-CTAATCCTGTTGCTGGTCC
1 AGAATGCGCAAGCCAAGGATCAGCCCGATCCCTCCCTACATGCTGTC-AATCCTACTGCTGGTCC
* * *
20565811 TGCTCCTGCAACCCTTAGTCCGGTCTGATCTTACACTGGGAATGAAGC-CCGTATGCTTAGACAT
65 TGCTCCTGCAACCCTCAGTCCGGTATGATCTTACACTGGGAATGAA-CTCCATATGCTTAGACAT
*
20565875 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGC
129 GAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGC
20565924 GCTTAGCCGA
Statistics
Matches: 151, Mismatches: 24, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
209 1 0.01
210 149 0.99
211 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.23
Consensus pattern (210 bp):
AGAATGCGCAAGCCAAGGATCAGCCCGATCCCTCCCTACATGCTGTCAATCCTACTGCTGGTCCT
GCTCCTGCAACCCTCAGTCCGGTATGATCTTACACTGGGAATGAACTCCATATGCTTAGACATGA
AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGCAATCAACCGGTTAGAGAA
ACCGGCTGAAGAGGT
Found at i:20567213 original size:26 final size:26
Alignment explanation
Indices: 20567184--20567235 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20567174 CCGGTTCGAT
20567184 CTTAGAC-TAGGACTGAACTCCGTATG
1 CTTAGACTTAGGA-TGAACTCCGTATG
* *
20567210 CTTAGACTTGGGATGAACTTCGTATG
1 CTTAGACTTAGGATGAACTCCGTATG
20567236 TCAAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTTAGGATGAACTCCGTATG
Found at i:20567376 original size:26 final size:26
Alignment explanation
Indices: 20567334--20567386 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
20567324 CCGATCCGAT
20567334 CTTAGACTGGGACTGAACT-TCGTATG
1 CTTAGACTGGGACTGAACTCT-GTATG
*
20567360 CTTAGATTGAGGA-TGAACTCTGTATG
1 CTTAGACTG-GGACTGAACTCTGTATG
20567386 C
1 C
20567387 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGACTGAACTCTGTATG
Found at i:20567983 original size:159 final size:157
Alignment explanation
Indices: 20567567--20568020 Score: 448
Period size: 159 Copynumber: 2.9 Consensus size: 157
20567557 GAACTCCGCA
* **
20567567 AGCTTAGTCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACTAGCGTGCAGGCGCTTT
1 AGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-AGCGTGCAGGCGCTCA
** * * *
20567632 GCCGGTCGAAGAGGCAGAACCCACAAGCTAGGGACCGACCTGGTCCGCCTCTGCGTGCTGTCGAT
65 GCCGGTCG-AGAGGCAGAATGCACAAGCTGGGGATCGACCTGGTCCGCCTCTGCGTGCTATCGAT
* *
20567697 CCTGCTGCCACAACCCTCAGTCTGGTCCC
129 CCTGCTGCCACAACCCTCAGTCAGCTCCC
* * * * * * *
20567726 ATCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCAGGCACTG
1 AGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-CAGCGTGCAGGCGCTC
* * *** * *
20567790 AGCCGGTCGGAGAGGCATAATGCGCAAGCTGGGGATCGGTTTGATTCC-CCTCTGTGTGCTATCG
64 AGCCGGTC-GAGAGGCAGAATGCACAAGCTGGGGATCGACCTG-GTCCGCCTCTGCGTGCTATCG
* **
20567854 GTCCTGCTGCCACAACCCTCAGTCCAGCT-GG
127 ATCCTGCTGCCACAACCCTCAGT-CAGCTCCC
* * * *
20567885 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGTCGTGCGGGCGCTCA
1 AGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAG-CGTGCAGGCGCTCA
* * * * * ** *
20567950 GCCGGTCAGAGAGGCAGAATGCACAAGCCGGGGATTGGCCTTGTCC-CCCCTATGTGCTACCGAT
65 GCCGGTC-GAGAGGCAGAATGCACAAGCTGGGGATCGACCTGGTCCGCCTCTGCGTGCTATCGAT
20568014 CCTGCTG
129 CCTGCTG
20568021 TCGTAACCCT
Statistics
Matches: 238, Mismatches: 50, Indels: 15
0.79 0.17 0.05
Matches are distributed among these distances:
158 27 0.11
159 203 0.85
160 8 0.03
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (157 bp):
AGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGCGTGCAGGCGCTCAG
CCGGTCGAGAGGCAGAATGCACAAGCTGGGGATCGACCTGGTCCGCCTCTGCGTGCTATCGATCC
TGCTGCCACAACCCTCAGTCAGCTCCC
Found at i:20568447 original size:26 final size:26
Alignment explanation
Indices: 20568409--20568461 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20568399 TTGGTCTGAT
20568409 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20568435 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
20568461 C
1 C
20568462 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20568465 original size:180 final size:181
Alignment explanation
Indices: 20568254--20568618 Score: 484
Period size: 183 Copynumber: 2.0 Consensus size: 181
20568244 TCCGACTGGG
* * ** * *
20568254 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGT-CTGAGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAAAACGTGCAG-GTGCTCA
* * * * * *
20568318 -ATCAG-AGAGGCAGAATGTGCAAGTCGGGGATCGACCCGATCCCCCCTATGTGCTATCGATCCT
65 CAACAGAAGAGGCAAAATGCGCAAGTCGAGGATCGACCCGAT-CCCCCTACGTGCTATCAATCCT
* * **
20568381 GCTGTCGTAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
129 GCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
20568434 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAAAACGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAAAACGTGCAGGTGCTCA-
* * * *
20568499 CCAACCGAAGAGGCAAAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTGCGTGCTGTCAATCCT
65 -CAACAGAAGAGGCAAAATGCGCAAGTCGAGGATCGACCCGATCCCCCTACGTGCTATCAATCCT
*
20568564 GTTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
129 GCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
20568617 GC
1 GC
20568619 CTAAGTCAAC
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
180 55 0.35
181 2 0.01
183 71 0.45
184 31 0.19
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (181 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAAAACGTGCAGGTGCTCAC
AACAGAAGAGGCAAAATGCGCAAGTCGAGGATCGACCCGATCCCCCTACGTGCTATCAATCCTGC
TGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:20568788 original size:159 final size:155
Alignment explanation
Indices: 20568434--20568804 Score: 377
Period size: 157 Copynumber: 2.3 Consensus size: 155
20568424 AACTCCGTAT
* * * * *
20568434 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAAAACGTGCAGGTGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATG-AAACAGCGTGCAGGCGCTAAG
* * * *
20568499 CCAACCGAAGAGGCAAAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTGCGTGCTGTCAATCCT
64 CCAACCGAAGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTGCATGCTGTCAATCCC
** * *
20568564 GTTGCCGCAACCCTCGGTCCGGTCTGA
129 ACTGCCACAACCCTCGATCCGGTCTGA
* *
20568591 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTAAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-AGCGTGCAGGCGCTAAG
** * * * * * * **
20568656 CTGATCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCTCTGCATGCTGTCGGTC
64 CCAACCGAAGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGAT-CCCC-CTGCATGCTGTCAATC
*
20568721 CCACTGCCACAACCCTCGATCTC-G-CTGGG
127 CCACTGCCACAACCCTCGATC-CGGTCT-GA
* * *
20568750 GCTTAGACGTGGAAAGAACTCCCTATGCCTAGGCCAACCCATGAAACAGGCGTGC
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACA-GCGTGC
20568805 GGGTGCTCAG
Statistics
Matches: 175, Mismatches: 31, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
156 4 0.02
157 85 0.49
158 7 0.04
159 77 0.44
160 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (155 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGCGTGCAGGCGCTAAGCC
AACCGAAGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTGCATGCTGTCAATCCCAC
TGCCACAACCCTCGATCCGGTCTGA
Found at i:20568829 original size:159 final size:156
Alignment explanation
Indices: 20568434--20568879 Score: 380
Period size: 159 Copynumber: 2.8 Consensus size: 156
20568424 AACTCCGTAT
* * **
20568434 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAAAACGTGCAGGTGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTGCAGGTGCTCAG
* * * * *
20568499 CCAAC-CGAAGAGGCAAAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTGCGTGCTGTCAATCC
65 CCAGCTAGAA-AGGCAAAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTGCATGCTGTCAATCC
*** * *
20568563 TGTTGCCGCAACCCTCGGTCCGGTCTGA
129 CACTGCCACAACCCTCGATCCGGTCTGA
* * * *
20568591 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC-GAGCGTGCAGGCGCTAA
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAG-GCGTGCAGGTGCTCA
* * * * * * * * **
20568655 G-CTGATCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCTCTGCATGCTGTCGG
64 GCCAGCT-AGAAAGGCAAAATGCGCAAGTCGGGGATCAGCCCGAT-CCCC-CTGCATGCTGTCAA
*
20568719 TCCCACTGCCACAACCCTCGATCTC-G-CTGGG
126 TCCCACTGCCACAACCCTCGATC-CGGTCT-GA
* * * *
20568750 GCTTAGACGTGGAAAGAACTCCCTATGCCTAGGCCAACCCATGAAACAGGCGTGCGGGTGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTGCAGGTGCTCAG
* * ** * * ** *
20568815 CCGGCTAGAAAGGCAGAATGCATAAGTCGGGGATCGGCCCAGTTCCCCCTGTGTGCTGCCAATCC
65 CCAGCTAGAAAGGCAAAATGCGCAAGTCGGGGATCAGCCC-GATCCCCCTGCATGCTGTCAATCC
20568880 TGCTACCGTA
Statistics
Matches: 225, Mismatches: 52, Indels: 23
0.75 0.17 0.08
Matches are distributed among these distances:
156 2 0.01
157 81 0.36
158 20 0.09
159 114 0.51
160 8 0.04
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (156 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTGCAGGTGCTCAGC
CAGCTAGAAAGGCAAAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTGCATGCTGTCAATCCCA
CTGCCACAACCCTCGATCCGGTCTGA
Found at i:20570257 original size:195 final size:197
Alignment explanation
Indices: 20569881--20570306 Score: 509
Period size: 195 Copynumber: 2.2 Consensus size: 197
20569871 CGGAGAAGCA
* * * *
20569881 GAATGCGCAAGTCGGGGATCGGCCTGGTCCCTCCTACGTGTTGTCGATCGTGCTACCGCAACCCG
1 GAATGCGCAAGTCAGGGATCAGCCCGGTCCCTCCTACGTGTTGCCGATCGTGCTACCGCAACCCG
* **
20569946 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTTGTAT
66 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTAT
* * * **
20570011 GCCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAGTCGGCTGGAGAGGTCGGCCGAAGAGG
131 GCCTAAGTCAACCCACAAAACAAGCATACGGGCGCTAAACCGGCTGGAGAGGTCGGCCGAAGAGG
20570076 TG
196 TG
* * ** * *
20570078 GAATGCGCAAGTTAGGGATCAGCCCGGTCCC-CCTACGTGTTGCCGATCTTGCTGTCGTAACCCT
1 GAATGCGCAAGTCAGGGATCAGCCCGGTCCCTCCTACGTGTTGCCGATCGTGCTACCGCAACCCG
* * *
20570142 CGGTCTGGTCCGATCTTAG-CTGGGAATTAACTCTATATTCTTAGACTGGGGATGAACTCCGTAT
66 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTAT
* * * * * *
20570206 GCCTAAGTCAACCCATAAAACGAGCATACGGGTGCTAAACC-GATCGGAGAGGTCAGTC-AGAGA
131 GCCTAAGTCAACCCACAAAACAAGCATACGGGCGCTAAACCGGCT-GGAGAGGTCGGCCGA-AGA
*
20570269 GGTA
194 GGTG
* * * * *
20570273 GAATGCGTAAGCCAGGGATCGGCCCAGTCACTCC
1 GAATGCGCAAGTCAGGGATCAGCCCGGTCCCTCC
20570307 CTGCGTGCTG
Statistics
Matches: 192, Mismatches: 34, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
194 3 0.02
195 114 0.59
196 48 0.25
197 27 0.14
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (197 bp):
GAATGCGCAAGTCAGGGATCAGCCCGGTCCCTCCTACGTGTTGCCGATCGTGCTACCGCAACCCG
CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTAT
GCCTAAGTCAACCCACAAAACAAGCATACGGGCGCTAAACCGGCTGGAGAGGTCGGCCGAAGAGG
TG
Found at i:20570892 original size:158 final size:158
Alignment explanation
Indices: 20570391--20570885 Score: 405
Period size: 158 Copynumber: 3.1 Consensus size: 158
20570381 ACTTCGTATG
* * * **
20570391 CTTAGACAT-GGAATGAACTCCATATGCTTAAGCCAAC-CTGA-GAAACGAGCATGCGGGCGTTC
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACAC--ACGAAACGAGCGTGCGGGCACTC
** * * * * * * *
20570453 AGCTGACCGGAGAGGCTGAATGCGCAAG-CTAGGGACCGGCCCGATCCACCCCTGCGTGCTGTCG
63 AGCCAACCGGAAAAGCAGAATACGCAAGCCGA-GGATCGGCCCGATCC-CCTCTGCGTGCTGTCG
***
20570517 ATCCTGCTATTGCAACCCTC-AGTCCGGTCCGAT
126 ATCCTGCTGCCGCAACCCTCGA-TCCGGTCCGAT
* ** * *
20570550 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACACACGAAACGAGCGTTCGGGCGTTGAGT
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCACTCAGC
* * * * * *
20570615 CAACCGGAAAGGCATAATACGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCATGCTG-CCAGTC
66 CAACCGGAAAAGCAGAATACGCAAGCCGAGGATCGGCCCGAT-CCCCTCTGCGTGCTGTCGA-TC
* * * * ** **
20570679 CCGCTGCCACAACCCTCGGT-TGGTTGGGG
129 CTGCTGCCGCAACCCTCGATCCGGTCCGAT
* * * * *
20570708 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGTCGACCCACGAAATGGGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCACTCAG
* * **
20570772 CCGACC-GAAGAAGTAGAATGTGCAAGCCGAGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATC
65 CCAACCGGAA-AAGCAGAATACGCAAGCCGAGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATC
* *
20570836 CTGTTGCCGCAACCCTCGATCCAGTCCGAT
129 CTGCTGCCGCAACCCTCGATCCGGTCCGAT
*
20570866 CTTAAACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
20570886 TGTATGCTTA
Statistics
Matches: 264, Mismatches: 60, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
157 36 0.14
158 113 0.43
159 111 0.42
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCACTCAGC
CAACCGGAAAAGCAGAATACGCAAGCCGAGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGATCCGGTCCGAT
Found at i:20570902 original size:26 final size:26
Alignment explanation
Indices: 20570866--20570918 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20570856 CCAGTCCGAT
20570866 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
* *
20570892 CTTACACTGGGGATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
20570918 C
1 C
20570919 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCTGTATG
Found at i:20571435 original size:119 final size:119
Alignment explanation
Indices: 20571224--20571444 Score: 284
Period size: 119 Copynumber: 1.9 Consensus size: 119
20571214 CTACTGCTAG
* *
20571224 TCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCATAGACATGGAATGAACTTCGTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGGTCTGGTCCAATCATAGACATGGAATGAACTTCGTATGCCTAAGC
* * ** *
20571289 CAATCCATGAAACGAGTGTTCAGGCACTCAGACGGCCCCCCTACGTGCTGTCGA
66 CAACCCACGAAACGAGCATGCAGGCACTCAGACGGCCCCCCTACGTGCTGTCGA
* *
20571343 TCCTGCTGCCACAACCCTCGGTTTGGTCCAATCTTAGAC-TGGGAATGAAC-TCTGTATGCCTAA
1 TCCTGCTGCCACAACCCTCGGTCTGGTCCAATCATAGACAT-GGAATGAACTTC-GTATGCCTAA
** * * *
20571406 GTTAACCCACGAAACGAGCATGCGGGCACTGAGCCGGCC
64 GCCAACCCACGAAACGAGCATGCAGGCACTCAGACGGCC
20571445 GGAGAGGCAT
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
118 3 0.03
119 83 0.97
ACGTcount: A:0.23, C:0.31, G:0.24, T:0.22
Consensus pattern (119 bp):
TCCTGCTGCCACAACCCTCGGTCTGGTCCAATCATAGACATGGAATGAACTTCGTATGCCTAAGC
CAACCCACGAAACGAGCATGCAGGCACTCAGACGGCCCCCCTACGTGCTGTCGA
Found at i:20572556 original size:26 final size:26
Alignment explanation
Indices: 20572527--20572579 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20572517 CCGATTCGAT
*
20572527 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20572553 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20572579 C
1 C
20572580 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20573448 original size:26 final size:26
Alignment explanation
Indices: 20573407--20573459 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20573397 CCGTTTCAAT
*
20573407 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
* *
20573433 CTTAGACTAGGTATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
20573459 C
1 C
20573460 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCAGTATG
Found at i:20573815 original size:26 final size:26
Alignment explanation
Indices: 20573786--20573838 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20573776 CCGGTCTGAT
20573786 CTTAGAC-TGAGAATAAACTCCGTATG
1 CTTAGACATG-GAATAAACTCCGTATG
*
20573812 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
20573838 C
1 C
20573839 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:20573918 original size:17 final size:17
Alignment explanation
Indices: 20573896--20573928 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
20573886 AGGTAGAATG
*
20573896 CGCAAGTCGGGGACCGA
1 CGCAAGCCGGGGACCGA
20573913 CGCAAGCCGGGGACCG
1 CGCAAGCCGGGGACCG
20573929 GCCCGGTGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.33, G:0.42, T:0.03
Consensus pattern (17 bp):
CGCAAGCCGGGGACCGA
Found at i:20574743 original size:26 final size:26
Alignment explanation
Indices: 20574705--20574757 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20574695 GGCTCAAACT
**
20574705 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
* *
20574731 CTTAGACAAGGAATGAAGTCCTTATG
1 CTTAGACAAGGAATGAACTCCGTATG
20574757 C
1 C
20574758 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:20574926 original size:26 final size:26
Alignment explanation
Indices: 20574890--20574942 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20574880 CCGATTAGAT
*
20574890 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20574916 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20574942 C
1 C
20574943 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20575198 original size:170 final size:158
Alignment explanation
Indices: 20574916--20575580 Score: 485
Period size: 158 Copynumber: 4.1 Consensus size: 158
20574906 ACTCTGTATG
* ** * *
20574916 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGTGTGCGGGCCCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * *
20574981 CAGCCGGAGAGGTAGAATGCGCAAGCCGGGGATTGGCCCGATCCCCCCTGCATGCTACCGATCTT
66 CAGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTG--TG-T---G--C-T
* * **
20575046 GCTCATGGTCCTGCTACCACAACCCTCGGTCCGGTCCGAT
122 G-T--TGATCCTGCTACCACAACCCTCAGTCAAGTCCGAT
* *
20575086 CTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
*
20575151 CGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGTGTGCTGTTGATCCT
66 CAGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGTGTGCTGTTGATCCT
* * * **
20575216 GCTGCTAGAACCCTCAGTCAAGTTTGAT
131 GCTACCACAACCCTCAGTCAAGTCCGAT
* * * * *
20575244 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATTCAGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * ** * * * * * * * *
20575309 CAGTCGGAGAGGCATATTGCGTAGGCCAGGGATCGACCTGGTCCCCCTCTGCGTGCTGTCGGTCC
66 CAGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCC-CTGTGTGCTGTTGATCC
** * * * * **
20575374 CACTGCCACATCCCT-AGGTC-AGGCTGGGG
130 TGCTACCACAACCCTCA-GTCAAGTC-CGAT
* * * * * *
20575403 CTTAGCCAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* ** ** * * * ** * * ** *
20575467 CC-GGCTTTAGAGGCAGAATGCGTAAGCTGAGGATCGACGAGGTCCCCTCTACGTGCTGTCGATC
65 CCAGTC-GGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGTGTGCTGTTGATC
* * * *
20575531 CTGCTGCCGCAACCCTCGGTC-CGATCCGAT
129 CTGCTACCACAACCCTCAGTCAAG-TCCGAT
*
20575561 CTTAGATTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
20575581 GGAATGCTTA
Statistics
Matches: 401, Mismatches: 86, Indels: 28
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 173 0.43
159 115 0.29
160 2 0.00
161 2 0.00
162 1 0.00
164 1 0.00
167 1 0.00
168 2 0.00
170 103 0.26
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CAGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGTGTGCTGTTGATCCT
GCTACCACAACCCTCAGTCAAGTCCGAT
Found at i:20575613 original size:26 final size:26
Alignment explanation
Indices: 20575561--20575613 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20575551 CCGATCCGAT
* *
20575561 CTTAGATTGGGAATGAACTCGGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
* *
20575587 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
20575613 C
1 C
20575614 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:20576312 original size:26 final size:26
Alignment explanation
Indices: 20576274--20576326 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20576264 GTTCCAAACT
20576274 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20576300 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
20576326 C
1 C
20576327 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20576918 original size:330 final size:336
Alignment explanation
Indices: 20576273--20577017 Score: 950
Period size: 330 Copynumber: 2.2 Consensus size: 336
20576263 TGTTCCAAAC
* *
20576273 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGA-ATGGGGATGAACTCCGTATGCCTAAGTCAAC
*
20576337 CCATGAAACGAGTGTGCGGGCGCTCAGCAGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC
65 CCATGAAACGA-------GACGCTCAGCAGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC
* * * *
20576402 CTGGTCCCCCTCTTCATGCTGTTGATCCCACTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACA
123 CCGGTCCCCCTCTACATGCTGTCGATCCCACTGCCACAACCCTCAGACCGGCTGGGGCTTAGACA
*
20576467 TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCACTCAGCCTGTCGGA
188 TGGAATGAACTCCATATGCCTAACCCAACCCACGAAACGGGCGTGCAGGCACTCAGCCTGTCGGA
* * * * * *
20576532 GAGGCAAAATGCACAAGTTGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTGTTGCCAC
253 GAGGCAAAATGCACAAGTCGAGGATCGACCCGATCACCCCTACGTGCTACCGATCCTGCTGCCAC
* ** *
20576597 AACCCTCGGTCTGGTTCAA
318 AACCCTCGATCCAGTCCAA
* * *
20576616 TCTTAGACTAGGAATGAACTCCATATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAACC
* *
20576681 CATGAAACGA-ACG-T-A-CTGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCC
66 CATGAAACGAGACGCTCAGCAGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCC
* * * *
20576742 TC-CTACGTGCTGTCGATCCCACTGCCACAACCCTCAGACTGGCTGGGG-TTAGACGTGGAATGA
131 CCTCTACATGCTGTCGATCCCACTGCCACAACCCTCAGACCGGCTGGGGCTTAGACATGGAATGA
* * * * *
20576805 ACTCCCTATGCCTAACCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTC-GATCGGAGAGGCAG
196 ACTCCATATGCCTAACCCAACCCACGAAACGGGCGTGCAGGCACTCAGCCTG-TCGGAGAGGCAA
** * * *
20576869 AATGCGTAAGTCGAGGATC-AGCCTGGTCACCCCTACGTGCTACCGATCCTGCTGCCACAACTCT
260 AATGCACAAGTCGAGGATCGA-CCCGATCACCCCTACGTGCTACCGATCCTGCTGCCACAACCCT
*
20576933 CGATCCAGTCCGA
324 CGATCCAGTCCAA
* * * *
20576946 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTCTGTCTAAGTCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAACC
*
20577011 CACGAAA
66 CATGAAA
20577018 TGAGCGTGCG
Statistics
Matches: 354, Mismatches: 45, Indels: 19
0.85 0.11 0.05
Matches are distributed among these distances:
329 2 0.01
330 194 0.55
331 41 0.12
332 44 0.12
333 1 0.00
334 1 0.00
335 2 0.01
342 1 0.00
343 68 0.19
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (336 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAACC
CATGAAACGAGACGCTCAGCAGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCC
CCTCTACATGCTGTCGATCCCACTGCCACAACCCTCAGACCGGCTGGGGCTTAGACATGGAATGA
ACTCCATATGCCTAACCCAACCCACGAAACGGGCGTGCAGGCACTCAGCCTGTCGGAGAGGCAAA
ATGCACAAGTCGAGGATCGACCCGATCACCCCTACGTGCTACCGATCCTGCTGCCACAACCCTCG
ATCCAGTCCAA
Found at i:20577767 original size:160 final size:158
Alignment explanation
Indices: 20577339--20577769 Score: 422
Period size: 160 Copynumber: 2.7 Consensus size: 158
20577329 AACTCCGTAT
* * *
20577339 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAGCGCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* * * *
20577404 CCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGACTCGATCCCCTCTGTGTGCTACCGATCA
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATAGGCTCGGTCCCCTCTGTGTGCTACCGATCA
* * *
20577469 TGCTACCATAACCCTCGGTCCGGTCCGA
131 CGCTACCACAACCCTCGGTCCGCTCCGA
* * * ** * *
20577497 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCA
* * * * * * *
20577561 GCCGACCGGAGAGGCATAATGTGCAAGCCGTGGATTA-GCCCGGTCCCC-CTTTGCATGCTGCC-
65 GCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGA-TAGGCTCGGTCCCCTCTGTG--TGCTACCG
* * *
20577623 AGTCCCGCTACCACAACCCTCGGGTCCAGCT-GGG
127 A-TCACGCTACCACAACCCTC-GGTCC-GCTCCGA
* * * *
20577657 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* * * * * * *
20577722 TCGATCGAAGAGGTAGAATGCGTAAGTCGGGGATAGGTTCGGTCCCCT
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATAGGCTCGGTCCCCT
20577770 TACGTGCTTT
Statistics
Matches: 215, Mismatches: 48, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
157 5 0.02
158 90 0.42
159 25 0.12
160 92 0.43
161 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATAGGCTCGGTCCCCTCTGTGTGCTACCGATCA
CGCTACCACAACCCTCGGTCCGCTCCGA
Found at i:20578517 original size:25 final size:25
Alignment explanation
Indices: 20578478--20578529 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
20578468 GTGGCTCAAA
20578478 ATCTTAGACTGGGAATGAACTCCGT
1 ATCTTAGACTGGGAATGAACTCCGT
*
20578503 ATCTTAGACAT-GGAATGAACTTCGT
1 ATCTTAGAC-TGGGAATGAACTCCGT
20578528 AT
1 AT
20578530 GCCTAAGCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 24 0.96
26 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (25 bp):
ATCTTAGACTGGGAATGAACTCCGT
Found at i:20579055 original size:26 final size:26
Alignment explanation
Indices: 20579017--20579069 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20579007 CCGGTCCGAT
20579017 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
20579043 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
20579069 C
1 C
20579070 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:20580299 original size:26 final size:26
Alignment explanation
Indices: 20580256--20580307 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
20580246 TGGTCCAATG
* *
20580256 TTAGATTGGGAATGAACT-TCGTATGC
1 TTAGACTGGGAATAAACTCT-GTATGC
*
20580282 TTAGACTGGGGATAAACTCTGTATGC
1 TTAGACTGGGAATAAACTCTGTATGC
20580308 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCTGTATGC
Found at i:20580470 original size:343 final size:347
Alignment explanation
Indices: 20579720--20580852 Score: 907
Period size: 355 Copynumber: 3.2 Consensus size: 347
20579710 GGTCTGGCTA
* * * * *
20579720 CCACAACCCTCAGTTCAGCTGGGCCTTATACATGGAATGAACTCCGTATACCTAAGCCAACCCAC
1 CCACAACCCT-AGGTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * * *
20579785 GAAATGAGCGTGCGGTCGATTAACCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGG
65 GAAACGAGCGTGCGGGCGATCAACCGACCAGAGAGGCAGAATGAGCAAGCTGAGGATCGACCCGG
*
20579850 TCCCCCCCTGTGCACTGTCGATCCTACTGCTGGCCTACCGCCGTAACCCTCGATCCGATCCAATC
130 TCCCCCCCTGCGCACTGTCGAT-CTACTGCTGGCCTA---CCG-AACCCTCGATCCGATCCAATC
* *
20579915 TTAGACTGGGAATGAACTCCCTATGCTTGGACATGAAATGAACTCCGTATGCCTAAGCCAACCAT
190 TTAGACTGGGAATGAACTCCCTATGCTTAGACATGAAATAAACTCCGTATGCCTAAGCCAACCAT
* * * * * **
20579980 GAAATGAGTGCACGGGCGCCCAGCTGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGA
255 GAAACGAGCGCACGGGCGCCCAGCCGGCCAGAAAGGCATAATGCAAAAGCCAGGGATCGACCCGA
* *
20580045 TCCCCCCTGTGTGCTGTCGATCCCGCTG
320 TCCCCCCTGCGTGCTCTCGATCCCGCTG
* * *
20580073 CCACAACCCTCGGTCCGGCGGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCAC
1 CCACAACCCTAGGT-CGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* ** * * * *
20580138 GAAACGGGCGTGCGGGCGATCAGTCGGCTAGAGAGGCAGAATGAGCATG-TCGAGGATCGACTCG
65 GAAACGAGCGTGCGGGCGATCAACCGACCAGAGAGGCAGAATGAGCAAGCT-GAGGATCGACCCG
** * * * *
20580202 GT-CCCCCCTGCGTGCTGTCGAT-T-CTGCT-GCC-A-C-AACCCTCGGTCTGGTCCAATGTTAG
129 GTCCCCCCCTGCGCACTGTCGATCTACTGCTGGCCTACCGAACCCTCGATCCGATCCAATCTTAG
* * * ** * *
20580260 ATTGGGAATGAACTTCGTATGCTTAGAC-TGGGGATAAACTCTGTATGCCTAAGTCAACCCATGA
194 ACTGGGAATGAACTCCCTATGCTTAGACAT-GAAATAAACTCCGTATGCCTAAGCCAA-CCATGA
** ** * * *
20580324 AACGAGCGTGCGGGTTCTCAGCCGGCCAGAAAGGCATAATGCAAAAGTCAGGGATC-AGCCCGGT
257 AACGAGCGCACGGGCGCCCAGCCGGCCAGAAAGGCATAATGCAAAAGCCAGGGATCGA-CCCGAT
*
20580388 CCCCCGCTGCGTGCTACT-GGTCCCGCTG
321 CCCCC-CTGCGTGCT-CTCGATCCCGCTG
20580416 CCACAACCCTAGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTAGGTC-GGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * ** * * ** * * * * *
20580481 AAAACCGA-TGTGCAAGTGCTCAACCGGTC-GAAGAGGCAAAATGCA-CAACCCGGGGATCGGCC
65 GAAA-CGAGCGTGCGGGCGATCAACCGACCAG-AGAGGCAGAATG-AGCAAGCTGAGGATCGACC
* ** * * * *
20580543 CGGTCCCCCCCTGTGTGCTGTCGATCCTGCTGCTGTCCTGATGCCGCAACCCTCGGTCCGAACCA
127 CGGTCCCCCCCTGCGCACTGTCGAT-CTACTGCTGGCCT-A--CCG-AACCCTCGATCCGATCCA
* * * * *
20580608 ATTTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAC
187 ATCTTAGACTGGGAATGAACTCCCTATGCTTAGACATGAAATAAACTCCGTATGCCTAAGCCAA-
* * ** * * * ** *
20580673 CCATGAAACGAGCATGCA--GGCGCTCAGTCGATCGGAGAGGCAGAATGCGCAA-CCTGGGGATC
251 CCATGAAACGAGC--GCACGGGCGCCCAGCCGGCCAGAAAGGCATAATGCAAAAGCC-AGGGATC
* * * * * *
20580735 AACCCGGTCCCCCCTGTGTGCTATCGATCCTGCTA
313 GACCCGATCCCCCCTGCGTGCTCTCGATCCCGCTG
** * **** ** * * *
20580770 CTGCAACCCTCA-GTCTGGTTCAATCTTAGATTTGGAATGAACTCCGTATGCGTAAGTCAACCTA
1 CCACAACCCT-AGGTC-GGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
*
20580834 CGAAACGAGCATGCGGGCG
64 CGAAACGAGCGTGCGGGCG
20580853 CTGAGCTGAC
Statistics
Matches: 622, Mismatches: 126, Indels: 63
0.77 0.16 0.08
Matches are distributed among these distances:
340 1 0.00
341 68 0.11
342 61 0.10
343 118 0.19
344 23 0.04
346 1 0.00
347 6 0.01
348 5 0.01
349 5 0.01
350 2 0.00
352 20 0.03
353 109 0.18
354 75 0.12
355 125 0.20
356 2 0.00
357 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (347 bp):
CCACAACCCTAGGTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
AAACGAGCGTGCGGGCGATCAACCGACCAGAGAGGCAGAATGAGCAAGCTGAGGATCGACCCGGT
CCCCCCCTGCGCACTGTCGATCTACTGCTGGCCTACCGAACCCTCGATCCGATCCAATCTTAGAC
TGGGAATGAACTCCCTATGCTTAGACATGAAATAAACTCCGTATGCCTAAGCCAACCATGAAACG
AGCGCACGGGCGCCCAGCCGGCCAGAAAGGCATAATGCAAAAGCCAGGGATCGACCCGATCCCCC
CTGCGTGCTCTCGATCCCGCTG
Found at i:20580640 original size:26 final size:26
Alignment explanation
Indices: 20580611--20580662 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20580601 CGAACCAATT
20580611 TTAGAC-TGGGAATGAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
*
20580637 TTAGACATGGAATGAACTTCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
20580663 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:20581161 original size:26 final size:26
Alignment explanation
Indices: 20581123--20581175 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20581113 CTAGTCTGAT
*
20581123 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20581149 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
20581175 C
1 C
20581176 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20581392 original size:513 final size:512
Alignment explanation
Indices: 20580281--20581399 Score: 1313
Period size: 513 Copynumber: 2.2 Consensus size: 512
20580271 ACTTCGTATG
* * **
20580281 CTTAGACTGGGGATAAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTTCTCAGC
1 CTTAGACTGGGAATGAACTC-GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGC
** * * * *
20580346 CGGCCAGAAAGGCATAATGCAAAAGTCAGGGATCAGCCCGGTCCCCCGCTGCGTGCTACTGGTCC
65 CGGCCAGAAAGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCGCTGCGGGCTACCGATCC
* ** * *
20580411 CGCTGCCACAACCCTAGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
130 CGCTGCCACAACCCTAGATCCAGCTGGGGCTTAGACATGGAATCAACTCCCTATGCCTAAGCCAA
* **
20580476 CCCACAAAACCGATGTGCAAGTGCTCAACCGGTCGAAGAGGCAAAATGCACAACCCGGGGATCGG
195 CCCACAAAACCGACGTGCAAGTGCTCAACCGACCGAAGAGGCAAAATGCACAACCCGGGGATCGG
* * * *
20580541 CCCGGTCCCCCCCTGTGTGCTGTCGATCCTGCTGCTGTCCTGATGCCGCAACCCTCGGTCCGAAC
260 CCCGGTCCCCCCCTGTGTGCTGTCGATCCTACGGCTGTCCTGATACCGCAACCCTCGGTCAGAAC
* * *
20580606 CAATTTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCA
325 CAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAACCA
* * * * *
20580671 ACCCATGAAACGAGCATGCAGGCGCTCAGTCGATCGGAGAGGCAGAATGCGCAACCTGGGGATCA
390 ACCCACGAAACGAGCATGCAGGCACTCAGTCGATCGGAGAGGCAGAATGCACAACCTAGGAATCA
** * * *
20580736 ACCCGGTCCCCCCTGTGTGCTATCGATCCTGCTACTGCAACCCTCAGTCTGGTTCAAT
455 ACCCGGTCCCCCCTACGTGCTATAGATCCTGCTACCGCAACCCTCAGTCCGGTTCAAT
* * * * * * * *
20580794 CTTAGATTTGGAATGAACTCCGTATGCGTAAGTCAACCTACGAAACGAGCATGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * * * **
20580859 TGACCTA-AAAGGCTTAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTTTGCGGGCTACCGATC
65 CGGCC-AGAAAGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCGCTGCGGGCTACCGATC
* * * *
20580923 CCGTTGCCACAACCTTCGATCCAGCTGGGGCTTAGACATGGAATCAACTCCCTATGCCTAAGCCT
129 CCGCTGCCACAACCCTAGATCCAGCTGGGGCTTAGACATGGAATCAACTCCCTATGCCTAAGCCA
* ** * * ***
20580988 ACCCACGAAA-CGAGCGTGCGGGTGCTCAACCGACCGGAGAGGCAGAATGCACAAGTTGGGGAAT
194 ACCCACAAAACCGA-CGTGCAAGTGCTCAACCGACCGAAGAGGCAAAATGCACAACCCGGGG-AT
* * * *
20581052 -GGCCTGGT-CCCTCCTGTGTGCTGTCGATCCTACGGCTGGTCCT-ACTACCGTAACCCTTGGTC
257 CGGCCCGGTCCCCCCCTGTGTGCTGTCGATCCTACGGCT-GTCCTGA-TACCGCAACCCTCGGTC
* ** *
20581114 TAG-TCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCT
320 -AGAACCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCT
* * * *
20581178 AAACCAACTCACGAATCGAGCGTGC-GGTCACTCGGTCGA-CTGGAGAGGCAGAATGCACAAGCC
384 AAACCAACCCACGAAACGAGCATGCAGG-CACTCAGTCGATC-GGAGAGGCAGAATGCACAA-CC
* * * *
20581241 -AGGAATCGACCCGGTCCCCCCTACGTGCTATAGATCTTGCTACCGTAACTCTCAGTCCGG-TCT
446 TAGGAATCAACCCGGTCCCCCCTACGTGCTATAGATCCTGCTACCGCAACCCTCAGTCCGGTTC-
*
20581304 GAT
510 AAT
* *
20581307 CTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCACTCAAC
1 CTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* *
20581372 CGGCCGGAGAGGCATAATGCGCAAGCCA
65 CGGCCAGAAAGGCATAATGCGCAAGCCA
20581400 TCTTCATATT
Statistics
Matches: 501, Mismatches: 93, Indels: 24
0.81 0.15 0.04
Matches are distributed among these distances:
512 35 0.07
513 459 0.92
514 7 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (512 bp):
CTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCC
GGCCAGAAAGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCGCTGCGGGCTACCGATCCC
GCTGCCACAACCCTAGATCCAGCTGGGGCTTAGACATGGAATCAACTCCCTATGCCTAAGCCAAC
CCACAAAACCGACGTGCAAGTGCTCAACCGACCGAAGAGGCAAAATGCACAACCCGGGGATCGGC
CCGGTCCCCCCCTGTGTGCTGTCGATCCTACGGCTGTCCTGATACCGCAACCCTCGGTCAGAACC
AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAA
CCCACGAAACGAGCATGCAGGCACTCAGTCGATCGGAGAGGCAGAATGCACAACCTAGGAATCAA
CCCGGTCCCCCCTACGTGCTATAGATCCTGCTACCGCAACCCTCAGTCCGGTTCAAT
Done.