Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 194 of 402
Found at i:20582499 original size:158 final size:159
Alignment explanation
Indices: 20581996--20582559 Score: 489
Period size: 158 Copynumber: 3.6 Consensus size: 159
20581986 AACTCCATAT
* * * ** *
20581996 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-CAACCTACGAAACAAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAA-CTTAACCCACGAAACGGGCGTGCGGGCACTCA
*** ** * * * * *
20582060 GTTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGA-TCCCTC-CTACGTGCTATC-G
65 ACCGACCGGAGAGGCAGAATGCACAAGCCGAGGATC-GCCCGATTCCCCCTCTGCATGCTA-CAG
* ** *** * **
20582122 ATCTTGCTGGTGCAACCCTCAGTCCAGTCT-AA
128 ACCCCGCTGCCACAACCCTCAGTCC-GACTGGG
* * ** * *
20582154 TCTTAGAC-TCGAAATGAACTCTGTATGCATAACTTAACCCACGAAACGAGCGTGCGGGCACTCA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAACTTAACCCACGAAACGGGCGTGCGGGCACTCA
* * * * * * * * * * *
20582218 ACTGACCGAAGAGGCATAATGCGCATGCTGGGGATCGGCCTATTCCCCCTCTGCATGCTACCGGC
65 ACCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGCCCGATTCCCCCTCTGCATGCTACAGAC
* *
20582283 CCCGCTGCCACAACCCTCAGTTCGGCTGGG
130 CCCGCTGCCACAACCCTCAGTCCGACTGGG
* * *
20582313 GCTTAGACATGGAATGAACTCCCTATGCCTAATTTAACCCACAAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAACTTAACCCACGAAACGGGCGTGCGGGCACTCAA
** *
20582378 CCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGA-TCCCCCT-TGTGTGCTACAGAT
66 CCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCG-CCCGATTCCCCCTCTGCATGCTACAGAC
20582441 CCCGCTGCCACAACCCTCAGTCCGACTGGG
130 CCCGCTGCCACAACCCTCAGTCCGACTGGG
* * * **
20582471 GCTTAGAGATGGAATGAACTCCCTATGCCTAAGC-CAACCCATGAAACGGGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAA-CTTAACCCACGAAACGGGCGTGCGGGCACTCA
* *
20582535 ATCAACCGGAGAGGCAGAATGCACA
65 ACCGACCGGAGAGGCAGAATGCACA
20582560 TGTCGGGGAT
Statistics
Matches: 330, Mismatches: 67, Indels: 18
0.80 0.16 0.04
Matches are distributed among these distances:
157 6 0.02
158 204 0.62
159 116 0.35
160 4 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAACTTAACCCACGAAACGGGCGTGCGGGCACTCAA
CCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGCCCGATTCCCCCTCTGCATGCTACAGACC
CCGCTGCCACAACCCTCAGTCCGACTGGG
Found at i:20582634 original size:158 final size:157
Alignment explanation
Indices: 20581996--20582656 Score: 407
Period size: 158 Copynumber: 4.2 Consensus size: 157
20581986 AACTCCATAT
* * * ** * *
20581996 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGA-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTCAA
***** * * * **
20582061 TTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC-AGCCCGATCCCTCCTACGTGCTATC-GAT
65 CCAACCGGAGAGGCAGAATGCACAAGCCGAGGATCGA-CCCGATCCCCCCCGCGTGCTA-CAGAT
*** *** * *
20582124 CTTGCTGGTGCAACCCTCAGTCCAGTCT-AA
128 CCCACTGCCACAACCCTCAGTCC-GACTGGA
* * * ** * * * *
20582154 TCTTAGACTCGAAATGAACTCTGTATGCATAA-CTTAACCCACGAAACGAGCGTGCGGGCACTCA
1 GCTTAGAAT-GGAATGAACTCCCTATGCCTAAGC-CAACCCACAAAACGGGCGTGCGGGCACTCA
** * * * * * * * * * * * *
20582218 ACTGACCGAAGAGGCATAATGCGCATGCTGGGGATCG-GCCTATTCCCCCTCTGCATGCTACCGG
64 ACCAACCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGA-TCCCCC-CCGCGTGCTACAGA
* * * * *
20582282 CCCCGCTGCCACAACCCTCAGTTCGGCTGGG
127 TCCCACTGCCACAACCCTCAGTCCGACTGGA
*** *
20582313 GCTTAGACATGGAATGAACTCCCTATGCCTAATTTAACCCACAAAACGGGCGTGCGGGCACTCAG
1 GCTTAGA-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTCAA
* ** *
20582378 CCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCTTGTGTGCTACAGATCC
65 CCAACCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCCGCGTGCTACAGATCC
* *
20582443 CGCTGCCACAACCCTCAGTCCGACTGGG
130 CACTGCCACAACCCTCAGTCCGACTGGA
** **
20582471 GCTTAGAGATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAA
1 GCTTAGA-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTCAA
* * * * * * * * *
20582536 TCAACCGGAGAGGCAGAATGCACATGTCGGGGATTGGCCCGGTCCCCCCCGCGTGCTGCTGATCC
65 CCAACCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCCGCGTGCTACAGATCC
* ** * **
20582601 TACTGCTGCAACCCTCGGTTTGATCT-GA
130 CACTGCCACAACCCTCAGTCCGA-CTGGA
* * *
20582629 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGAAT-GGAATGAACTCCCTATGC
20582657 TTAGATTGGG
Statistics
Matches: 398, Mismatches: 93, Indels: 24
0.77 0.18 0.05
Matches are distributed among these distances:
157 6 0.02
158 273 0.69
159 115 0.29
160 4 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (157 bp):
GCTTAGAATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTCAAC
CAACCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCCGCGTGCTACAGATCCC
ACTGCCACAACCCTCAGTCCGACTGGA
Found at i:20582666 original size:26 final size:26
Alignment explanation
Indices: 20582630--20582682 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20582620 TTGATCTGAT
20582630 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
20582656 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20582682 C
1 C
20582683 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20583024 original size:26 final size:26
Alignment explanation
Indices: 20582986--20583036 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20582976 TTGGTCCGAT
** *
20582986 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
20583012 CTTAGACACGGAATGAACTCCGTAT
1 CTTAGACACGGAATGAACTCCGTAT
20583037 CCTAAGCCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATG
Found at i:20583514 original size:26 final size:26
Alignment explanation
Indices: 20583485--20583537 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20583475 TTGGTCTGAT
* *
20583485 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20583511 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20583537 C
1 C
20583538 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20590067 original size:26 final size:26
Alignment explanation
Indices: 20590029--20590081 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20590019 GGCTCAAAAT
20590029 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20590055 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
20590081 C
1 C
20590082 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20590777 original size:26 final size:26
Alignment explanation
Indices: 20590748--20590798 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20590738 CCGATCTGAT
20590748 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
20590774 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
20590799 CCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20591082 original size:148 final size:145
Alignment explanation
Indices: 20590808--20591253 Score: 339
Period size: 157 Copynumber: 3.0 Consensus size: 145
20590798 TCCCTAAGCC
* * * *
20590808 AACCCACGAAACGAGCGTGCGGGGGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAACCAGGATCA
1 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATACGCAAACCAGGATCA
* * * *
20590873 GCCTGATCCCCCTATGTGCTATCGATCCTGCTACCACAACCCTCGGTCCAGTCTGATCTTAGAC-
66 GCCAGATCCCCCTATGTGCTACCGATCCTGCTACCACAACCCTCGGTCCAGGCTGAGCTTAGACA
20590937 TGGGAATGAACTTCGT
131 T-GGAATGAACTTCGT
* * * * * * *
20590953 AACCCATGAAACGAGCGTGCGGGCGTTGAGCCGATCGAAGAGGCATAATACGTAAGCCGGGGATC
1 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATACGCAAACC-AGGATC
* * * * *
20591018 AGCCCAG-TCCCCCTCTGCGTGCTGCCGATCCTGTTGCCACAACCCTCGGTCC-GGCTAGGGCTT
65 AG-CCAGATCCCCCTAT--GTGCTACCGATCCTGCTACCACAACCCTCGGTCCAGGCT-GAGCTT
*
20591081 AGACATGGAATGAACTCCCTATGCCTAAGCC
126 AGACATGGAATGAA----CT-T--C---G-T
* * * *
20591112 AACCCACGAAACGGGCGTGCGGGCGCTCAGCC-A-CAAGAGAGGCAGAATGCGCAAGCCGAGGAT
1 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGA-AGAGGCAGAATACGCAAACC-AGGAT
* * * ** * ** *
20591175 C-GACCCGATCCCCCTTACGTGCTACCGATCCTACTGTCACAACCTTCGGTCCAATCTGATCTTA
64 CAG-CCAGATCCCCC-TATGTGCTACCGATCCTGCTACCACAACCCTCGGTCCAGGCTGAGCTTA
20591239 GAC-TGGGAATGAACT
127 GACAT-GGAATGAACT
20591254 CTGTATGCTT
Statistics
Matches: 236, Mismatches: 43, Indels: 36
0.75 0.14 0.11
Matches are distributed among these distances:
145 48 0.20
146 15 0.06
147 6 0.03
148 46 0.19
149 1 0.00
152 2 0.01
153 3 0.01
155 1 0.00
156 1 0.00
157 51 0.22
158 33 0.14
159 29 0.12
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (145 bp):
AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATACGCAAACCAGGATCA
GCCAGATCCCCCTATGTGCTACCGATCCTGCTACCACAACCCTCGGTCCAGGCTGAGCTTAGACA
TGGAATGAACTTCGT
Found at i:20591264 original size:26 final size:26
Alignment explanation
Indices: 20591235--20591290 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
20591225 CCAATCTGAT
*
20591235 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
20591261 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20591287 CTTA
1 CTTA
20591291 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20591419 original size:184 final size:183
Alignment explanation
Indices: 20591090--20591445 Score: 500
Period size: 184 Copynumber: 1.9 Consensus size: 183
20591080 TAGACATGGA
* *
20591090 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCACAAGAGAGGC
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATCAGCCACAAGAGAGGC
*
20591155 AGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTTACGTGCTACCGATCCTACTGTCACAACCT
66 AGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTTACGTGCTACCGATCCTACTATCACAACCT
*
20591220 TCGGTCCAATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGG
131 TCGATCCAATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGG
* * * * **
20591273 ATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCGATCAGCAGACCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATCAGC-CACAAGAGAGG
* * * * ** *
20591338 TAGAATGTGCAAGCCGGGGATCGGCCCGATCCCCAC-TACGTGCTGTCGATCCTACTATCGCAAC
65 CAGAATGCGCAAGCCGAGGATCGACCCGATCCCC-CTTACGTGCTACCGATCCTACTATCACAA-
* *
20591402 CCTT-GATCCAGTCTGATCTTAGACTGTGAATGAACTCTGTATGC
128 CCTTCGATCCAATCTGATCTTAGACTGGGAATGAACTCTGTATGC
20591446 ATAAGTCAAC
Statistics
Matches: 151, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
183 48 0.32
184 98 0.65
185 5 0.03
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (183 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATCAGCCACAAGAGAGGC
AGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTTACGTGCTACCGATCCTACTATCACAACCT
TCGATCCAATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGG
Found at i:20591597 original size:500 final size:486
Alignment explanation
Indices: 20590555--20591898 Score: 1447
Period size: 501 Copynumber: 2.7 Consensus size: 486
20590545 GGTCCTGTTG
* * ** * * *
20590555 CCACAGCCCTCAGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATACCTAAACCAACCCAC
1 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * * * *
20590620 AAAACGAGCGTGC-GGTGCTCAGCCAGCCGGAGAGGCAGAATGTGCAAGCTGGGGAACGACTCGG
66 GAAACGGGCGTGCGGGCGCTCAGCCA-CCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGG
* *
20590684 TCCCCCCT-CTGTGCTGTCGATCCTGCTACTGGTCCTGCTGCCACAACCCTAGATCCGATCTGAT
130 TCCCCCCTAC-GTGC--T--A-CC-G--A----TCCTGCTGCCACAA-CCTCGGTCCGATCTGAT
* * * *
20590748 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACCC
181 CTTAGACTGGGAATGAACTCTGTATGCTTAGA-ATGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
20590813 ACGAAACGAGCGTGCGGGGGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAACC-AGGATCAGCCT
245 ACGAAACGAGCGTGCGGGCGCTCAGCAGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCC
* * * *
20590877 GATCCCCCTATGTGCTATCGATCCTGCTACCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGA
310 GATCCCCCTACGTGCTGTCGATCCTACTACCACAACCCTCGATCCAGTCTGATCTTAGACTGGGA
* * * * * * *
20590942 ATGAACTTCGTAACCCATGAAACGAGCGTGCGGGCGTTGAGCCGATCGAAGAGGCATAATACGTA
375 ATGAACTTCGTAACCCATGAAACGAGCGTGCAGGCGCTGAGCCAACCAAAAAGGCATAATACGCA
* * * *
20591007 AGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTGCCGATCCTGTTG
440 AGCCGGGGATCAGCCCAGTCCCCCTCTGCATGCTGCCGATCCCGCTA
*
20591054 CCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * *
20591119 GAAACGGGCGTGCGGGCGCTCAGCCACAAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGAT
66 GAAACGGGCGTGCGGGCGCTCAGCCACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGT
* * * *
20591184 CCCCCTTACGTGCTACCGATCCTACTGTCACAACCTTCGGTCCAATCTGATCTTAGACTGGGAAT
131 CCCCCCTACGTGCTACCGATCCTGCTGCCACAACC-TCGGTCCGATCTGATCTTAGACTGGGAAT
* *
20591249 GAACTCTGTATGCTTAGATTGGGGATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTG
195 GAACTCTGTATGCTTAGAAT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * *
20591314 CGGGCGATCAGCAGACCGGAGAGGTAGAATGTGCAAGCCGGGGATCGGCCCGATCCCCACTACGT
259 CGGGCGCTCAGCAGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCC-CTACGT
* * * *
20591379 GCTGTCGATCCTACTATCGCAACCCTTGATCCAGTCTGATCTTAGACTGTGAATGAACTCTGTAT
323 GCTGTCGATCCTACTACCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAA--C--T-T
* * * **
20591444 GCATAAGTCAACCCATTAAATGAGCGTGCAGGTGCTGAGCCAACCAAAAAGGCATAATGTGCAAG
383 -C----GT-AACCCATGAAACGAGCGTGCAGGCGCTGAGCCAACCAAAAAGGCATAATACGCAAG
* * * *
20591509 CCGGGGATCAGTCTAGTCCCTCTCTGCATGCTGCCGGTCCCGCTA
442 CCGGGGATCAGCCCAGTCCCCCTCTGCATGCTGCCGATCCCGCTA
* *
20591554 CCACAACCCTCGTTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * *
20591619 GAAACGGGCGTACGGGCACTCAACCGACCAGAGAGGCAGAATGCTCAAGTCGGGGATC-AGCCCG
66 GAAACGGGCGTGCGGGCGCTCAGCC-ACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCG
** * *
20591683 GTCCCCCCTACGTGCTGTCGATCCTGCTGCCACAATCCTCGGTCCGGTCTGACCTTAGACTGGGA
129 GTCCCCCCTACGTGCTACCGATCCTGCTGCCACAA-CCTCGGTCCGATCTGATCTTAGACTGGGA
* * ** *
20591748 ATGAACT-TCGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCCATTAAATGAGC
193 ATGAACTCT-GTATGCTTAGAAT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * * * *
20591812 GTGCAGGTGCTCAGCTGGCTGGAAAGGCATAATGCGTAAGCCGGGGATCAGCCCGGTCCTCCTCT
256 GTGCGGGCGCTCAGCAGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCC-CC-CT
* * *
20591877 GCATCCTGTCGATCCTACTACC
319 ACGTGCTGTCGATCCTACTACC
20591899 GGTCCTGCTG
Statistics
Matches: 709, Mismatches: 114, Indels: 41
0.82 0.13 0.05
Matches are distributed among these distances:
486 3 0.00
487 126 0.18
488 15 0.02
489 55 0.08
491 2 0.00
493 2 0.00
494 3 0.00
495 2 0.00
497 1 0.00
499 111 0.16
500 179 0.25
501 186 0.26
502 24 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (486 bp):
CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
GAAACGGGCGTGCGGGCGCTCAGCCACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGT
CCCCCCTACGTGCTACCGATCCTGCTGCCACAACCTCGGTCCGATCTGATCTTAGACTGGGAATG
AACTCTGTATGCTTAGAATGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
GGCGCTCAGCAGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTACGTGCT
GTCGATCCTACTACCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTTCGTAACCC
ATGAAACGAGCGTGCAGGCGCTGAGCCAACCAAAAAGGCATAATACGCAAGCCGGGGATCAGCCC
AGTCCCCCTCTGCATGCTGCCGATCCCGCTA
Found at i:20591762 original size:158 final size:158
Alignment explanation
Indices: 20591261--20591762 Score: 463
Period size: 158 Copynumber: 3.2 Consensus size: 158
20591251 ACTCTGTATG
* * *
20591261 CTTAGATTGGGGATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCGA-TCAG
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGC-ACTCAG
* * * * *
20591325 CAGACCGGAGAGGTAGAATGTGCAAGCCGGGGATCGGCCCGATCCCCACTACGTGCTGTCGATCC
65 CCGACCAGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCGGTCCCCACTACGTGCTGTCGATCC
* * * * * *
20591390 TACTATCGCAACCCTTGATCCAGTCTGAT
130 TGCTACCACAACCCTCGATCCGGTCTGAC
* * ** * * ** *
20591419 CTTAGACTGTGAATGAACTCTGTATGCATAAGTCAACCCATTAAATGAGCGTGCAGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * ** * * * * *
20591484 CAACCAAAAAGGCATAATGTGCAAGCCGGGGATCAGTCTAGTCCCTCTCTGCATGCTGCCGGTCC
66 CGACCAGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCGGTCCC-CACTACGTGCTGTCGATCC
* * * **
20591549 CGCTACCACAACCCTCGTTTCGG-CTGGGG
130 TGCTACCACAACCCTCGATCCGGTCT-GAC
* * * * * *
20591578 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCACTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* *
20591642 CCGACCAGAGAGGCAGAATGCT-CAAGTCGGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATC
65 CCGACCAGAGAGGCAGAATG-TGCAAGCCGGGGATCAGCCCGGTCCCCACTACGTGCTGTCGATC
* * *
20591706 CTGCTGCCACAATCCTCGGTCCGGTCTGAC
129 CTGCTACCACAACCCTCGATCCGGTCTGAC
*
20591736 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
20591763 TTAGACTAGG
Statistics
Matches: 261, Mismatches: 76, Indels: 14
0.74 0.22 0.04
Matches are distributed among these distances:
157 1 0.00
158 143 0.55
159 115 0.44
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGACCAGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCGGTCCCCACTACGTGCTGTCGATCCT
GCTACCACAACCCTCGATCCGGTCTGAC
Found at i:20591787 original size:26 final size:26
Alignment explanation
Indices: 20591736--20591788 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20591726 CCGGTCTGAC
* *
20591736 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20591762 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
20591788 C
1 C
20591789 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20591879 original size:343 final size:346
Alignment explanation
Indices: 20591431--20592065 Score: 798
Period size: 355 Copynumber: 1.8 Consensus size: 346
20591421 TAGACTGTGA
** *
20591431 ATGAACTCTGTATGCATAAGTCAACCCATTAAATGAGCGTGCAGGTGCTGAGCCAACCAAAAAGG
1 ATGAACTCCATATGCATAAGTCAACCCATTAAATGAGCGTGCAGGTGCTCAGCCAACCAAAAAGG
* * * *
20591496 CATAATGTGCAAGCCGGGGATCAGTCTAGTCCCTCTCTGCA-T-G-CTGCCGGTCCCGCTACCAC
66 CATAATGCGCAAGCCGGGGATCAGCCCAGTCCCTCTCTGCACTCGACTACCGGTCCCGCTACCAC
* *
20591558 AACCCTCG-TTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
131 AACCC-CGAGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
*
20591622 ACGGGCGTACGGGCACTCAACCGACCAGAGAGGCAGAATGC-TCAAG-TCGGGGATCAGCCCGGT
195 ACGAGCGTACGGGCACTCAACCGACCAGAGAGGCAGAATGCGT-AAGCT-GGGGATCAGCCCGGT
20591685 CCCCCCTACGTGCTGTCGATCCTGCTGCCACAATCCTCGGTCCGGTCTGACCTTAGACTGGGAAT
258 CCCCCCTACGTGCTGTCGATCCTGCTGCCACAATCCTCGGTCCGGTCTGACCTTAGACTGGGAAT
20591750 GAACTTCGTATGCTTAGACTAGGG
323 GAACTTCGTATGCTTAGACTAGGG
* *** ***
20591774 ATGAACTCCATATGCCTAAGTCAACCCATTAAATGAGCGTGCAGGTGCTCAGCTGGCTGGAAAGG
1 ATGAACTCCATATGCATAAGTCAACCCATTAAATGAGCGTGCAGGTGCTCAGCCAACCAAAAAGG
* *
20591839 CATAATGCGTAAGCCGGGGATCAGCCCGGT-CCTCCTCTGCATCCTGTCGATCCTACTACCGGTC
66 CATAATGCGCAAGCCGGGGATCAGCCCAGTCCCT-CTCTGCA--C--TCG-----ACTACCGGTC
* * * * *
20591903 CTGCTGCCATAACCCCGAGTTCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCA
121 CCGCTACCACAACCCCGAGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* ** * * * **
20591968 ACCCATGAAACGAGCGTACGGGTGCTCAGCCGACCGGAGATGCAGAATGCGTAAGCTGGGGATTG
186 ACCCACGAAACGAGCGTACGGGCACTCAACCGACCAGAGAGGCAGAATGCGTAAGCTGGGGATCA
* *
20592033 GCTCGGTCCCCCCTGCGTGCTGTCGATCCTGCT
251 GCCCGGTCCCCCCTACGTGCTGTCGATCCTGCT
20592066 ACTGGTCCTA
Statistics
Matches: 242, Mismatches: 34, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
342 3 0.01
343 87 0.36
348 1 0.00
349 1 0.00
354 2 0.01
355 146 0.60
356 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (346 bp):
ATGAACTCCATATGCATAAGTCAACCCATTAAATGAGCGTGCAGGTGCTCAGCCAACCAAAAAGG
CATAATGCGCAAGCCGGGGATCAGCCCAGTCCCTCTCTGCACTCGACTACCGGTCCCGCTACCAC
AACCCCGAGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
CGAGCGTACGGGCACTCAACCGACCAGAGAGGCAGAATGCGTAAGCTGGGGATCAGCCCGGTCCC
CCCTACGTGCTGTCGATCCTGCTGCCACAATCCTCGGTCCGGTCTGACCTTAGACTGGGAATGAA
CTTCGTATGCTTAGACTAGGG
Found at i:20592132 original size:26 final size:27
Alignment explanation
Indices: 20592103--20592160 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
20592093 CCGATCCGAT
20592103 CTTAGAC-TGGGAATGAACTCCGTATG-
1 CTTAGACAT-GGAATGAACTCCGTATGC
*
20592129 CTTAGACATGGAATGAACTCCGTGTGC
1 CTTAGACATGGAATGAACTCCGTATGC
20592156 CTTAG
1 CTTAG
20592161 CCAACCCACG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 23 0.79
27 6 0.21
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (27 bp):
CTTAGACATGGAATGAACTCCGTATGC
Found at i:20592640 original size:158 final size:158
Alignment explanation
Indices: 20592129--20592640 Score: 482
Period size: 159 Copynumber: 3.2 Consensus size: 158
20592119 ACTCCGTATG
* * * *
20592129 CTTAGAC-ATGGAATGAACTCCGTGTGCCTTAGCCAACCCACGAAACGAGCGTGCGTGCGGGCGC
1 CTTAGACTAGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG-G-GT--GTGCGGGCGC
* * * *
20592193 TTAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTATG-TGTTGTC
62 TCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTC-GGT-CCCCCTATGCTGCTGTC
* *
20592257 GATCCTGCTATCACAACCCTCAGTCTGGTTTGAT
125 GATCCTGCTATCACAACCCTCGGTCTGGTCTGAT
* * * * * *
20592291 CTTAGA-TAGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACTAGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAG
* * * * * * * * *
20592355 CAGACCGGAGAGGCATAATGTGCAAGTCGGGGATTGGCTCGATCCCCCTTTGCGTACTGTCGGTC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-TCGGTCCCCCTATGC-TGCTGTCGATC
* * ** * **
20592420 CCGTTGCCACAACCCTCGGTCCGG-CTGGGG
129 CTGCTATCACAACCCTCGGTCTGGTCT-GAT
* *
20592450 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCAGGG-GCTCA
1 CTTAGACTAGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGTGTGC-GGGCGCTCA
* * * *
20592513 GCCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCGGTTCGGTCCCCC-ATGCATGCTATCGAT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-TCGGTCCCCCTATGC-TGCTGTCGAT
*
20592577 CCTGCTATCATAACCCTCGGTCTGGTCTGAT
128 CCTGCTATCACAACCCTCGGTCTGGTCTGAT
* * *
20592608 CCTAGACTA-GGAATGAACTCTGTATGCTTAAGC
1 CTTAGACTAGGGAATGAACTCCGTATGCCTAAGC
20592641 TGGGGATGAA
Statistics
Matches: 276, Mismatches: 65, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
157 8 0.03
158 103 0.37
159 121 0.44
160 4 0.01
162 40 0.14
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
CTTAGACTAGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTCGGTCCCCCTATGCTGCTGTCGATCCT
GCTATCACAACCCTCGGTCTGGTCTGAT
Found at i:20594509 original size:158 final size:157
Alignment explanation
Indices: 20594004--20594509 Score: 489
Period size: 159 Copynumber: 3.2 Consensus size: 157
20593994 ACTCCGTATG
** * **
20594004 CTTAGAC-GTGGAATGAACTCTGTGTGCCTAAGCCAACCCATTAAACGAGCATGCGTGCGGGCGC
1 CTTAGACTG-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGC---C-TGCGGGCGC
* * * * * * * * *
20594068 TTAACCGATCGAAGAGCCAGAATGCGCAAGCCGAAGATCAGCTCGGTCCCCCCTGCGTGTTGTCG
61 TTAGCCGACCGAAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGGT-CCCCCTGCGTGCTGCCG
* * *
20594133 ATCCTGCTACCGCAACCCTCAATCCGGTCTGAT
125 ATCCTGCTGCCACAACCCTCGATCCGGTCTGAT
* * * * * *
20594166 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCCTGCGGGCGCTTAGC
* * * * * * * *
20594231 CAACCGAGGAGGCATAATGTGCAGGCC-AGGGATCGGCCCGATCCCTCTCTGCGTGCTACCGGTC
66 CGACCGAAGAGGCAAAATGCGCAAGCCGA-GGATCGGCCCGGTCCC-C-CTGCGTGCTGCCGATC
* * **
20594295 CTGCTGCCACAACCCTCGGTCTGG-CTGGGG
128 CTGCTGCCACAACCCTCGATCCGGTCT-GAT
* *
20594325 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCCTGCGGGCGCTTAG
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCCTGCGGGCGCTTAG
* * * *
20594389 TCGGCCGAAGAGGCAAAATGCGTAAGCCGAGGATCGGCCCGGTACCCCCTGCGTGCTGCCAATCC
65 CCGACCGAAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGGT-CCCCCTGCGTGCTGCCGATCC
*
20594454 TGCCGCCACAACCCTCGATCCGGTCTGAT
129 TGCTGCCACAACCCTCGATCCGGTCTGAT
*
20594483 CTTAGACTGGGAATGAACTTCATATGC
1 CTTAGACTGGGAATGAACTCCATATGC
20594510 TTAGATTGGG
Statistics
Matches: 275, Mismatches: 59, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
157 5 0.02
158 101 0.37
159 121 0.44
160 5 0.02
162 42 0.15
163 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCCTGCGGGCGCTTAGC
CGACCGAAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTGCGTGCTGCCGATCCTG
CTGCCACAACCCTCGATCCGGTCTGAT
Found at i:20594534 original size:26 final size:26
Alignment explanation
Indices: 20594483--20594535 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20594473 CCGGTCTGAT
*
20594483 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
20594509 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20594535 C
1 C
20594536 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20595243 original size:26 final size:26
Alignment explanation
Indices: 20595205--20595257 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20595195 GGCTTCAAAT
20595205 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20595231 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
20595257 C
1 C
20595258 CCTAAGCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20597029 original size:26 final size:26
Alignment explanation
Indices: 20596979--20597029 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
20596969 GGCTCAAAAT
*
20596979 CTTAGACTGGGAATGAAATCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
20597005 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAAATCCGTAT
20597030 TCCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:20597717 original size:26 final size:26
Alignment explanation
Indices: 20597688--20597738 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20597678 GATCTGATCT
*
20597688 TAGACTGGGAATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTCCATATGCA
*
20597714 TAGACTGGGGATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
20597739 TTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCA
Found at i:20597787 original size:181 final size:181
Alignment explanation
Indices: 20597473--20597808 Score: 410
Period size: 181 Copynumber: 1.9 Consensus size: 181
20597463 CTACTACTGG
* * * *
20597473 TCCTGCTATCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTATATGCTTAGAC
1 TCCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCATAGAC
* * ** **
20597538 ATGGATTGAAATCCGTATGCCTAAGCCAACCCATGAAACAAGTGTGCAGGCGCTCAGTTGGTCAG
66 ATGGATTGAAATCCATATGCCTAAGCCAACCCACGAAACAAGTGTGCAGGCGCTCAGCCGACCAG
*
20597603 AGAGGCAGAATGCGTAAGCCGGGGACCGATCCACTCCCCCCTACGTGCCAA
131 AGAGGCAGAACGCGTAAGCCGGGGACCGATCCACTCCCCCCTACGTGCCAA
** * *
20597654 TCCTGCTACCGCAATGCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAGAC
1 TCCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCATAGAC
* * * * *
20597719 -TGGGGA-TGAACTCCATATGCTTAAGTCAACCTACGAAACGAGCT-TGC-GGACGCTCAGCCGA
66 AT--GGATTGAAATCCATATGCCTAAGCCAACCCACGAAACAAG-TGTGCAGG-CGCTCAGCCGA
* *
20597780 CCAGAGAGGCAGGACGCGTAAGCTGGGGA
127 CCAGAGAGGCAGAACGCGTAAGCCGGGGA
20597809 TCGAACGAGT
Statistics
Matches: 129, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
180 3 0.02
181 122 0.95
182 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (181 bp):
TCCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCATAGAC
ATGGATTGAAATCCATATGCCTAAGCCAACCCACGAAACAAGTGTGCAGGCGCTCAGCCGACCAG
AGAGGCAGAACGCGTAAGCCGGGGACCGATCCACTCCCCCCTACGTGCCAA
Found at i:20598968 original size:26 final size:26
Alignment explanation
Indices: 20598939--20598989 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20598929 CCGGTCTGAT
20598939 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
20598965 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
20598990 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20599186 original size:26 final size:26
Alignment explanation
Indices: 20599135--20599187 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20599125 CCGGTTCAAT
* *
20599135 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20599161 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
20599187 C
1 C
20599188 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20599245 original size:196 final size:198
Alignment explanation
Indices: 20598768--20599258 Score: 636
Period size: 196 Copynumber: 2.5 Consensus size: 198
20598758 TCTGACTGGG
*
20598768 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * *
20598833 TC-GACGGAGAGGCAGAATGCGTAAGTCGGGGA-TAGGCCCGATCCCCTCCTACGTATGATCGAT
66 TCGGCCGAAGAGGCAGAATGCGTAAGCCGAGGACCAGGCCCGATCCCCTCCTACGTATGATCGAT
* * * * *
20598896 CCTGCTACTGGTCCTGCTGTCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
131 CCTGCTACTAGTCCTGCTGCCGCAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCG
20598961 TAT
196 TAT
* * *
20598964 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* *
20599029 TCGGCC-AGAGAGGCAGAATGCGTAAGCCGAGGACCA-GCCCGATCCCC-CCTGCGTGCTG-TCG
66 TCGGCCGA-AGAGGCAGAATGCGTAAGCCGAGGACCAGGCCCGATCCCCTCCTACGT-ATGATCG
* * *
20599090 ATCTTGCTACTAGTCTTGTTGCCGCAACCCTCGATCCGGT-TCAATCTTAGACTGGGAATGAACT
129 ATCCTGCTACTAGTCCTGCTGCCGCAACCCTCGATCCGGTCT-AATCTTAGACTGGGAATGAACT
*
20599154 TCGTAT
193 CCGTAT
* * * * * *
20599160 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGTGTGTGGGTGCTTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * **
20599225 TCGGCCGAAAAGGTAGAATGCACAAGCCGAGGAC
66 TCGGCCGAAGAGGCAGAATGCGTAAGCCGAGGAC
20599259 TGACCCAGTC
Statistics
Matches: 256, Mismatches: 33, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
195 1 0.00
196 215 0.84
197 39 0.15
198 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.21
Consensus pattern (198 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
TCGGCCGAAGAGGCAGAATGCGTAAGCCGAGGACCAGGCCCGATCCCCTCCTACGTATGATCGAT
CCTGCTACTAGTCCTGCTGCCGCAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCG
TAT
Found at i:20600688 original size:157 final size:159
Alignment explanation
Indices: 20600360--20600693 Score: 354
Period size: 158 Copynumber: 2.1 Consensus size: 159
20600350 GCTCAAAATA
** * * * *
20600360 TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCC
1 TTAGACTGGGAATGAACTCCCTACGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACCCAGCA
* * ** * *
20600425 GACTGAAGAGGCAGAATACGCAAGTCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCAGGTCCC
66 GACCGAAGAGGCAGAATACGCAAGCCGAAGATCGACCCGGTCCCCCTCTACGTGCTACAGGTCCC
* *
20600490 GCTGCCACAACCCTCAATCCGGCTAGGGC
131 ACTGCCACAACCCTCAATCCGGCTAGAGC
* *
20600519 TTAGACAT-GGAATGAACTCCCTACGCCTAAGCCAACCCAC-GAACGGGCGTACGGGCACCCAGC
1 TTAGAC-TGGGAATGAACTCCCTACGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACCCAGC
* * * * ** *
20600582 ATACCGGAGAGGTAGAATGCGCAAGCCGAAGATCGACGTGGTCCCCC-CTGA-GTGCTACCGGTC
65 AGACCGAAGAGGCAGAATACGCAAGCCGAAGATCGACCCGGTCCCCCTCT-ACGTGCTACAGGTC
* * * * *
20600645 CTACTGTCGCAACCCTCGATCCGGTCT-GATC
129 CCACTGCCACAACCCTCAATCCGG-CTAGAGC
20600676 TTAGACTGGGAATGAACT
1 TTAGACTGGGAATGAACT
20600694 TCGTATGCTT
Statistics
Matches: 143, Mismatches: 28, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
156 1 0.01
157 49 0.34
158 57 0.40
159 35 0.24
160 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.27, T:0.17
Consensus pattern (159 bp):
TTAGACTGGGAATGAACTCCCTACGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACCCAGCA
GACCGAAGAGGCAGAATACGCAAGCCGAAGATCGACCCGGTCCCCCTCTACGTGCTACAGGTCCC
ACTGCCACAACCCTCAATCCGGCTAGAGC
Found at i:20600716 original size:26 final size:26
Alignment explanation
Indices: 20600675--20600727 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20600665 CCGGTCTGAT
*
20600675 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20600701 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
20600727 C
1 C
20600728 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20601058 original size:26 final size:26
Alignment explanation
Indices: 20601017--20601069 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20601007 TCGGTCCGAT
*
20601017 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20601043 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
20601069 C
1 C
20601070 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20601142 original size:342 final size:339
Alignment explanation
Indices: 20600360--20601142 Score: 1005
Period size: 342 Copynumber: 2.3 Consensus size: 339
20600350 GCTCAAAATA
* * * *
20600360 TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCC
1 TTAGACTGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCC
* * * *
20600425 GACTGAAGAGGCAGAATACGCAAGTCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCAGGTCCC
64 GACAG-AGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCAACGTGCTGCAGGTCCC
*
20600490 GCTGCCACAACCCTCAATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAAC
128 GCTGCCACAACCCTCAATCCGACTAGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAAC
* * * * *
20600555 CCACGAACGGGCGTACGGGCACCCAGCATACCGGAGAGGTAGAATGCGCAAGCCGAAGATCGACG
193 CCAAGAACGGGCGTACGGGCACCAAGCAGACCGGAGAGGCAGAATGCGCAAGCCGAAGATCGACC
* * *
20600620 TGGTCCCCCCTGAGTGCTACCGGTCCTACTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGG
258 CGGTCCCCCCTGAGTGCTACCGATCCTACTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGG
20600685 GAATGAACTTCGTATGC
323 GAATGAACTTCGTATGC
*
20600702 TTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGCC
1 TTAGACTGG-GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCC
* * * * * * * *
20600767 GGTCAGAGAGGCATAATGCGTAAGTCAGGGATCGGTCCGATCCCCTTCAACGTGTTGCCGGTCCC
64 -GACAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCAACGTGCTGCAGGTCCC
* * * *
20600832 GCTTCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
128 GCTGCCACAACCCTCAATCCGACTAGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAAC
* * * * * **
20600897 CCAAGAAACGGGCGTGCGGGCACTAAGCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGAC
193 CCAAG-AACGGGCGTACGGGCACCAAGCAGACCGGAGAGGCAGAATGCGCAAGCCGAAGATCGAC
* * * * *
20600962 CCGGT-CCCCCTGAGTGCTGCTGATCCTGCTGTCGTAACCCTCGATTCGGTCCGATCTTAGACTG
257 CCGGTCCCCCCTGAGTGCTACCGATCCTACTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTG
20601026 GGAATGAAC-TCTGTATGC
322 GGAATGAACTTC-GTATGC
* * * * *
20601044 TTAGACTAGGGATGAACTCCGTATGCCTAAGTTAACCAATGGAACGAGCGTGCGGATGCTCAGCC
1 TTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG-CGCTCAGCC
*
20601109 GACCAGAGAGGCAGGATGCGCAAG-CTGGGGATCG
64 GA-CAGAGAGGCAGAATGCGCAAGTC-GGGGATCG
20601143 AACGGGTGGT
Statistics
Matches: 379, Mismatches: 54, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
341 6 0.02
342 315 0.83
343 58 0.15
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.18
Consensus pattern (339 bp):
TTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCGCTCAGCCGA
CAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCAACGTGCTGCAGGTCCCGCT
GCCACAACCCTCAATCCGACTAGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCA
AGAACGGGCGTACGGGCACCAAGCAGACCGGAGAGGCAGAATGCGCAAGCCGAAGATCGACCCGG
TCCCCCCTGAGTGCTACCGATCCTACTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAA
TGAACTTCGTATGC
Found at i:20602428 original size:159 final size:159
Alignment explanation
Indices: 20602080--20602581 Score: 473
Period size: 158 Copynumber: 3.2 Consensus size: 159
20602070 AACTCCATCT
* ** * ** * * *
20602080 GCTTAGATATGGAATGAACTCTGTATGCCTAAGCCAATCCAGGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCTGGCGCTCAG
** * * *
20602145 CCGGTCGGAGAGGCAAAATGTACAAGCCGGGGACCGGCCCGGTCCCCCCTGTGTGCTATCGATCC
66 CCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
20602210 TGCTG-CAGCAACCCTCGGT-CTGATTCGA
131 TGCTGTCA-CAACCCTCGATCCAGACTCGA
* ** *
20602238 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTTAACCCACAAAACGAGCGTGCTGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCTGGCGCTCA
* * * * * *
20602302 GCCGGTCAGAGAGGCATAATACGCAAGTCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGAT
65 GCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGAT
* * * *
20602367 CCAGTTGTCACAACCCTCGATCCAG-CTGGG
129 CCTGCTGTCACAACCCTCGATCCAGACTCGA
* * *
20602397 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATA-G-GTGTG-TGGGTGCT
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC-AAA-ACGAGCGTGCT-GGCGCT
* * * * *
20602459 CAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACACGGTCCCCCCTGCGTTCTGTCGA
63 CAGCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGA
* ** * *
20602524 TCCTGCTGTCGCAACCCTCGATCTGGTC-CAA
128 TCCTGCTGTCACAACCCTCGATCCAGACTCGA
*
20602555 TCTTAGAC-TGGGAATGAACTCCATATG
1 GCTTAGACAT-GGAATGAACTCCATATG
20602582 TTTATACTGG
Statistics
Matches: 276, Mismatches: 58, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
157 2 0.01
158 147 0.53
159 117 0.42
160 9 0.03
161 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCTGGCGCTCAG
CCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTGTCACAACCCTCGATCCAGACTCGA
Found at i:20603722 original size:26 final size:26
Alignment explanation
Indices: 20603693--20603745 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20603683 CCGGTCCGAT
20603693 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
20603719 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
20603745 C
1 C
20603746 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20606394 original size:159 final size:159
Alignment explanation
Indices: 20606104--20606394 Score: 379
Period size: 159 Copynumber: 1.8 Consensus size: 159
20606094 ACCCTCAGTC
* * *
20606104 CGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAATCCACAAAATGAGCGTACGG
1 CGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGG
* * * * * **
20606169 GCACTCAGTCGACCGGAGAGGTAGAATACGCAAGCCTAGGACCGGCCCGATCCCCCCTTGGGTGC
66 GCACTAAGTCGACCGAAGAGGCAGAATACGCAAGCCGAGGACCGACCCGATCCCCCCTTGCATGC
20606234 TGTCGATCCTACTATCGCAACCCTCGATG
131 TGTCGATCCTACTATCGCAACCCTCGATG
* *
20606263 CGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGG
1 CGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGG
* * * * * * *
20606328 GCACTAAGGT-GCCCGAAGAGGCATAATGCGCAAGTCGAGGATCGACTCGGT-CCCCCTCTGCAT
66 GCACTAA-GTCGACCGAAGAGGCAGAATACGCAAGCCGAGGACCGACCCGATCCCCCCT-TGCAT
20606391 GCTG
129 GCTG
20606395 CCGTGGCCGC
Statistics
Matches: 111, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
158 6 0.05
159 103 0.93
160 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (159 bp):
CGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGG
GCACTAAGTCGACCGAAGAGGCAGAATACGCAAGCCGAGGACCGACCCGATCCCCCCTTGCATGC
TGTCGATCCTACTATCGCAACCCTCGATG
Found at i:20606619 original size:26 final size:26
Alignment explanation
Indices: 20606590--20606642 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20606580 CCAGTCCGAT
20606590 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
* **
20606616 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
20606642 C
1 C
20606643 CTAAGTTACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:20607815 original size:159 final size:158
Alignment explanation
Indices: 20607441--20607837 Score: 444
Period size: 158 Copynumber: 2.5 Consensus size: 158
20607431 TGTCAATCTC
* *
20607441 GCTGCC-AGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTA
1 GCTGCCGA-TCCTGCTACCACAACCTTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTA
* ** * * *
20607505 TGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCTCTCAGCCGATCGGAGAGGCAAAATGCGCAA
65 TGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCAGCCGATCGAAGAGGCAAAATGCGCAA
**
20607570 GCCAGGGACCGACCCGGTCCCCCCTGCGT
130 GCCAGGGACCGACCCGGTCCCCCCCACGT
* * * * ** *
20607599 GCTGTCGATCCTGCTACCGCAACCTTCGATCCGGTCT-GATCTTAGAC-TGGGAATGAACTTCGT
1 GCTGCCGATCCTGCTACCACAACCTTCGGTCC-GACTGGGGCTTAGACAT-GGAATGAACTCCGT
* * * * * * *
20607662 ATGCCTAAGTCAACCCATGAAACGAGCATTCAGGCACTGAGCTGA-CTGAAGAGGCATAATGTGC
64 ATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCAGCCGATC-GAAGAGGCAAAATGCGC
* **
20607726 AAG-CAGGGGATCGAGTCGGTCCCCCTCCACGT
128 AAGCCA-GGGACCGACCCGGTCCCCC-CCACGT
* *
20607758 GCTGCCGATCCTGCTACCACAACCTTCGGTACGACTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGCCGATCCTGCTACCACAACCTTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTAT
20607823 GCCTAAGCCAACCCA
66 GCCTAAGCCAACCCA
20607838 AAAAATGGGT
Statistics
Matches: 194, Mismatches: 37, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.02
158 117 0.60
159 72 0.37
160 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTGCCGATCCTGCTACCACAACCTTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTAT
GCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCAGCCGATCGAAGAGGCAAAATGCGCAAG
CCAGGGACCGACCCGGTCCCCCCCACGT
Found at i:20607887 original size:159 final size:156
Alignment explanation
Indices: 20607441--20607908 Score: 474
Period size: 159 Copynumber: 3.0 Consensus size: 156
20607431 TGTCAATCTC
* *
20607441 GCTGCC-AGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTA
1 GCTGCCGA-TCCTGCTACCACAACCTTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTA
* *
20607505 TGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCTCTCAGCCGATCGGAGAGGCAAAATGCGCAA
65 TGCCTAAGCCAACCCAAGAAATGAGTGTGCGGG-TCTCAGCCGACCGGAGAGGCAAAATGCGCAA
**
20607570 GCCAGGGACCGACCCGGTCCCCCCTGCGT
129 G-CAGGGACCGACCCGGTCCCCCCCACGT
* * * * ** *
20607599 GCTGTCGATCCTGCTACCGCAACCTTCGATCCGGTCT-GATCTTAGAC-TGGGAATGAACTTCGT
1 GCTGCCGATCCTGCTACCACAACCTTCGGTCC-GACTGGGGCTTAGACAT-GGAATGAACTCCGT
* * * ** * ** * * * * * *
20607662 ATGCCTAAGTCAACCCATGAAACGAGCATTCAGGCACTGAGCTGACTGAAGAGGCATAATGTGCA
64 ATGCCTAAGCCAACCCAAGAAATGAGTGTGC-GGGTCTCAGCCGACCGGAGAGGCAAAATGCGCA
* **
20607727 AGCAGGGGATCGAGTCGGTCCCCCTCCACGT
128 AGCA-GGGACCGACCCGGTCCCCC-CCACGT
* *
20607758 GCTGCCGATCCTGCTACCACAACCTTCGGTACGACTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGCCGATCCTGCTACCACAACCTTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTAT
* * * *
20607823 GCCTAAGCCAACCCAAAAAATGGGTGTGCGGGTGCTCAACCGGCCGGAGAGGCAAAATGCGCAAG
66 GCCTAAGCCAACCCAAGAAATGAGTGTGCGGGT-CTCAGCCGACCGGAGAGGCAAAATGCGCAAG
* * *
20607888 CCAAGGATCGATCCGGTCCCC
130 -CAGGGACCGACCCGGTCCCC
20607909 TCTGCATGCT
Statistics
Matches: 241, Mismatches: 59, Indels: 19
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 116 0.48
159 119 0.49
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (156 bp):
GCTGCCGATCCTGCTACCACAACCTTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTAT
GCCTAAGCCAACCCAAGAAATGAGTGTGCGGGTCTCAGCCGACCGGAGAGGCAAAATGCGCAAGC
AGGGACCGACCCGGTCCCCCCCACGT
Found at i:20607961 original size:685 final size:683
Alignment explanation
Indices: 20606113--20608027 Score: 2189
Period size: 685 Copynumber: 2.8 Consensus size: 683
20606103 CCGGTCTGAT
* * * * * *
20606113 CTTAGAC-TGGGAATGAACTTTGTATGCCTAAGTCAATCCACAAAATGAGCGTACGGGCACTCAG
1 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGTGTGCGGGCTCTCAG
* * * * * * *
20606177 TCGACCGGAGAGGTAGAATACGCAAGCCTA-GGACCGGCCCGATCCCCCCTTGGGTGCTGTCGAT
65 CCGATCGGAGAGGCAGAATGCGCAAGCC-AGGGACCGACCCGGTCCCCCC-TGCGTGCTGTCGAT
* * * *
20606241 CCTACTATCGCAACCCTCGATGCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTC
128 CCTGCTACCGCAA-CCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTC
* * * * * * *
20606306 AACCCACGAAATGAGCGTTCGGGCACTAAGGTGCCCGAAGAGGCATAATGCGCAAGTCGAGGATC
192 AACCCATGAAACGAGCGTTCGGGCACTGAGCTGACTGAAGAGGCATAATGCGCAAGTCGGGGATC
**
20606371 GACTCGGTCCCCCTCTGCATGCTGCCG-TGGCC-GCTGTGACAACCCTCGGTCTGGCTGGGGCTT
257 GACTCGGTCCCCCTCTGCATGCTGCCGAT--CCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTT
*
20606434 AGACATGGAATGAAATCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTGCTCAGCCGG
320 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-GGGTGTGCGGGTGCTCAGCCGG
* ** * *
20606499 TCGGAGAAGCAGAATGTACAAGCCGGGGATCGGCCCGATCCCCTCCTACGTGCTATCGATCCTGC
384 TCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCT-CTGCGTGCTATCGATCCTGC
* * *
20606564 TGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGAAATGAACTCCATATGCTTAGATTGGGGA
448 TGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGGA
* * * * * *
20606629 TGAACTCCATATGCCTAAGT-TACCACAAGAAACGAGCGTGTGGGTGCTCAACTGATCGGAAAGG
513 TGAACTCCGTATGCCTAAGTCAACC-CATGAAACGAGCGTGAGGCTGCTCAACGGATCGGAAAGG
* *
20606693 TTGGCCGAAGAGGCATAATACGTAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATC
577 TTGACCGAAGAGGCATAATACGTAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCTGTCAATC
* * * *
20606758 TCACTGTCGGTCCTGCTGCCACAACCCTCGATTCGGCTGGGG
642 TCACTGCCAGTCCTGCTGCCACAACCCTCGATCCGACTGGGG
*
20606800 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGTGTGCGGG-TGCTCAG
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGTGTGCGGGCT-CTCAG
* * * * * **
20606864 CC-AGTCAGAGAGGCAGAATGCACAAGTC-GAGGTCCTACTGCC-G-CAACCCT-CAGT-CTGAT
65 CCGA-TCGGAGAGGCAGAATGCGCAAGCCAG-GGACCGAC--CCGGTCCCCCCTGC-GTGCTG--
* * * * * * * *
20606923 TTGATCTTAG--ACTGGGAA--T-GAACTCC-ATATG--CTCAGACAT-GGAATGAAC-TCTGGA
123 TCGATCCT-GCTAC-CGCAACCTCG-A-TCCGGTCTGATCTTAGAC-TGGGAATGAACTTC-GTA
20606978 TGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCACTGAGCTGACCTG-AGAGGCATAATGCGCA
182 TGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCACTGAGCTGA-CTGAAGAGGCATAATGCGCA
* * *
20607042 AGTCGGGGATCGACCCGGTCCACCTCTGCATGCTGCCGATCCTGTTGCCACAACCCTCGGTCTGG
246 AGTCGGGGATCGACTCGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGG
* * * *
20607107 CTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGATCGTGTGGGTG
311 CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGGGT-GTGCGGGTG
* * * *
20607172 CTCAGCTGGTCGAAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGATCCCCCCTGCGTGCTATC
375 CTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCTCTGCGTGCTATC
* * * ** * *
20607237 GATCTTGTTGTTGCAACCCTCAATCCGGTCCGATCTTAGACTGGGAAGGAACTCCATATGCTTAC
440 GATCCTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* *
20607302 ATTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCT-CTCAACCGGC
505 ATTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG-AGGCTGCTCAA-CGGA
* * ** *
20607366 T-GGAGA-GTTCGACCGAAGAGGCATAATACGTAAGCC-AGGTATCAGCCCGGTCCCTTTCTATG
568 TCGGAAAGGTT-GACCGAAGAGGCATAATACGTAAGCCGAGG-ATCAGCCCGATCCCCCTCTACG
* * *
20607428 TGTTGTCAATCTCGCTGCCAGTCCTGCTGCCACAACCCTCGGTCCGACTGGGG
631 TGCTGTCAATCTCACTGCCAGTCCTGCTGCCACAACCCTCGATCCGACTGGGG
* *
20607481 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCTCTCAGC
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGTGTGCGGGCTCTCAGC
*
20607546 CGATCGGAGAGGCAAAATGCGCAAGCCAGGGACCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
66 CGATCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
20607611 GCTACCGCAACCTTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAC
131 GCTACCGCAACC-TCGATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAC
* * *
20607676 CCATGAAACGAGCATTCAGGCACTGAGCTGACTGAAGAGGCATAATGTGCAAG-CAGGGGATCGA
195 CCATGAAACGAGCGTTCGGGCACTGAGCTGACTGAAGAGGCATAATGCGCAAGTC-GGGGATCGA
* ** * * * *
20607740 GTCGGTCCCCCTCCACGTGCTGCCGATCCTGCTACCACAACCTTCGGTAC-GACTGGGGCTTAGA
259 CTCGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCACAACCCTCGGT-CTGGCTGGGGCTTAGA
** * *
20607804 CATGGAATGAACTCCCTATGCCTAAGCCAACCCAAAAAATGGGTGTGCGGGTGCTCAACCGGCCG
323 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-GGGTGTGCGGGTGCTCAGCCGGTCG
* * ** * * * *
20607869 GAGAGGCAAAATGCGCAAGCCAAGGATCGATCCGGTCCCCTCTGCATGCTATCGATCCTACTATC
387 GAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCTCTGCGTGCTATCGATCCTGCTGTC
* * * * * * ** *
20607934 GCAACCATTGGTCTGGTTCAATCTTAGACTGGGAATGAATTCTGTATGCTTAGACTGGGGATGAT
452 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGGATGA-
20607999 A-TCCGTATGCCTAAGTCAACCCATGAAAC
516 ACTCCGTATGCCTAAGTCAACCCATGAAAC
20608028 AAGTGTACGG
Statistics
Matches: 1020, Mismatches: 160, Indels: 98
0.80 0.13 0.08
Matches are distributed among these distances:
679 3 0.00
680 16 0.02
681 305 0.30
682 247 0.24
683 10 0.01
684 10 0.01
685 324 0.32
686 11 0.01
687 91 0.09
688 1 0.00
689 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (683 bp):
CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGTGTGCGGGCTCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTACCGCAACCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
CATGAAACGAGCGTTCGGGCACTGAGCTGACTGAAGAGGCATAATGCGCAAGTCGGGGATCGACT
CGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACAT
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGGGTGTGCGGGTGCTCAGCCGGTCGGAGA
GGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCTCTGCGTGCTATCGATCCTGCTGTCGCAA
CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGGATGAACTCC
GTATGCCTAAGTCAACCCATGAAACGAGCGTGAGGCTGCTCAACGGATCGGAAAGGTTGACCGAA
GAGGCATAATACGTAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCTGTCAATCTCACTGCCA
GTCCTGCTGCCACAACCCTCGATCCGACTGGGG
Found at i:20608006 original size:26 final size:26
Alignment explanation
Indices: 20607956--20608008 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20607946 CTGGTTCAAT
*
20607956 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAATTCCGTATG
*
20607982 CTTAGACTGGGGATG-ATATCCGTATG
1 CTTAGACTGGGAATGAAT-TCCGTATG
20608008 C
1 C
20608009 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATTCCGTATG
Found at i:20608727 original size:26 final size:26
Alignment explanation
Indices: 20608689--20608739 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20608679 GGTTCAAACT
20608689 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20608715 CTTAGACAT-GGAATGAACTCTATAT
1 CTTAGAC-TGGGAATGAACTCCATAT
20608740 TCGTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20609569 original size:158 final size:157
Alignment explanation
Indices: 20609084--20609570 Score: 389
Period size: 159 Copynumber: 3.1 Consensus size: 157
20609074 GCGTAGACAT
* * * * * * *
20609084 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGAACGGGCGTTAAATC-AGCCGGA
1 GGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAACGAGCGTACGGGC-ATCAACCGA-CCGAA
* * ** * ** * * *
20609148 GAGGCAAAATGCAG-AAACCGAGGACCTGCCTGATTCCCCCCTATGTGTTGTCGATCCTGCTACC
64 GAGGCAGAAGGC-GCAAGTCGAGGATCAACCCGA-TCCCCCCTACGTGTTGTCGATCCTGCTGCC
* * *
20609212 ATAACCCTCGGTCTGGTCTGATCTTAGATTG
127 GTAACCCTCGGTCCGGTCTGATCTTAGACTG
* * * * *
20609243 GGAATGAACCCCGTAAGCCTAAGTCAACCCACGAAACGAGCGTACGGGCATTGAGCCGACCGAAT
1 GGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAACGAGCGTACGGGCA-TCAACCGACCGAAG
* * * * * **
20609308 AGGCATAAGGCGCAAGTCGGGGATCAACCCGATCCCCCTCTACCTGCTGTCGGTCCCACTGCCGT
65 AGGCAGAAGGCGCAAGTCGAGGATCAACCCGATCCCCC-CTACGTGTTGTCGATCCTGCTGCCGT
**
20609373 AACCCTCGGTCCGG-CTGGGGCTTAGACAT-
129 AACCCTCGGTCCGGTCT-GATCTTAGAC-TG
* *
20609402 GGAATGAACTCCTTACA-CCTAAGCCAACCCACGAAACGGGCGTGTGA-GGGC-TCAACC-AGCC
1 GGAATGAACTCCGTA-AGCCTAAGCCAACCCACGAAACGAGC--GT-ACGGGCATCAACCGA-CC
* * * * * * *
20609463 GGAGAGGTAGAATGCGCAAGTCGAGGAT-AGGCCCGGTCCCCCCTACGAGTTATCGATCCTGCTG
61 GAAGAGGCAGAAGGCGCAAGTCGAGGATCA-ACCCGATCCCCCCTACGTGTTGTCGATCCTGCTG
*
20609527 CCGTAACCCTTGGTCCGGTCTGATCTTAGACTG
125 CCGTAACCCTCGGTCCGGTCTGATCTTAGACTG
20609560 GGAATGAACTC
1 GGAATGAACTC
20609571 TGTATGGTTA
Statistics
Matches: 258, Mismatches: 56, Indels: 29
0.75 0.16 0.08
Matches are distributed among these distances:
157 1 0.00
158 62 0.24
159 185 0.72
160 3 0.01
161 6 0.02
162 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAACGAGCGTACGGGCATCAACCGACCGAAGA
GGCAGAAGGCGCAAGTCGAGGATCAACCCGATCCCCCCTACGTGTTGTCGATCCTGCTGCCGTAA
CCCTCGGTCCGGTCTGATCTTAGACTG
Found at i:20609581 original size:26 final size:26
Alignment explanation
Indices: 20609552--20609602 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20609542 CGGTCTGATC
20609552 TTAGACTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCTGTATGG
* *
20609578 TTAGATTGGGGATGAACTCTGTATG
1 TTAGACTGGGAATGAACTCTGTATG
20609603 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.10, G:0.31, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGG
Found at i:20609835 original size:501 final size:501
Alignment explanation
Indices: 20609017--20610132 Score: 1298
Period size: 501 Copynumber: 2.2 Consensus size: 501
20609007 CTGCTGCTGG
* * * * *
20609017 TCCTGCTGTCGTAACCCTTGGTCAGATCTGATGTTAGACTAGGAATGAACTCTGTATGCG-TAGA
1 TCCTGCTGCCGTAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATG-GTTAGA
* * * * ** *
20609081 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGAACGGGCGTTAAATCAGCCG
65 -ATGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTAAACCAGCCG
* * * * * *
20609146 GAGAGGCAAAATGCAGAAACCGAGGACCTGCCTGATTCCCCCCTATGTGTTGTCGATCCTGCTAC
129 GAAAGGCAAAATGCAGAAACCGAGGACCTGACTGATTCCCCCCTACGTCTTGTCAATCCTACTAC
* * * * *
20609211 CATAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACCCCGTAAGCCTAAGTCAACCCACG
194 CACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACCCCGTAAGCCTAAGCCAACCCACG
* * *
20609276 AAACGAGCGTACGGGCATTGAGCCGACCGAATAGGCATAAGGCGCAAGTCGGGGATCAACCCGAT
259 AAACGAGCGTACGGGCACTGACCCGACCGAAGAGGCATAAGGCGCAAGTCGGGGATCAACCCGAT
* ** *
20609341 CCCCCTCTACCTGCTGTCGGTCCCACTGCCGTAACCCTCGGTCCGGCTGGGGCTTAGACATGGAA
324 CCCCCTCTACCTGCTGTCGATCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAA
*
20609406 TGAACT-CCTTACACCTAAGCCAACCCACGAAACGGGCGTGTGAGG-GCTCAACC-AGCCGGAGA
389 TGAACTACC-TACACCTAAGCCAACCCACGAAACGGACGTGTG-GGTGCTCAACCGA-CCGGAGA
* * * *
20609468 GGTAGAATGCGCAAGTCGAGGATAGGCCCGGTCCCCCCTACGAGTTATCGA
451 GGTAGAATGCGCAAGCCGAGGATAGGCCCGATCCCCCCTACGAGCTACCGA
*
20609519 TCCTGCTGCCGTAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGGTTAGAT
1 TCCTGCTGCCGTAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGGTTAGAA
* * * * **
20609584 TGGGGATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGTTCAGCC-GATTG
66 T-GGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTAAACCAG-CCG
* * * * *
20609648 GAAAGGCAGAATGC-GTAAGCCGGGGACC-GACTGGA-TCCCCCCTGCGTCTTGTCAATCCTATT
129 GAAAGGCAAAATGCAG-AAACCGAGGACCTGACT-GATTCCCCCCTACGTCTTGTCAATCCTACT
* * * * *
20609710 GCCGCAACCCTCGGTCTGATCCGCTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCA
192 ACCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACCCCGTAAGCCTAAGCCAACCCA
* ** * ** * * *
20609775 TGAATTGA-CTGTTCGGGTGCTGACCCGGCC-AGAGAGGCATAATGCGCAAGTCGTGGATCAACC
257 CGAAACGAGC-GTACGGGCACTGACCCGACCGA-AGAGGCATAAGGCGCAAGTCGGGGATCAACC
* * * * *
20609838 CGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTTGGTCCGACTGGGGCTTAGACAT
320 CGATCCCCCTCTACCTGCTGTCGATCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACAT
** *
20609903 GGAATGAACTACCTATGCCTAAGCCAACCCACGAAACGGACGTGTGGGTGCTCAGCCGACCGGAG
385 GGAATGAACTACCTACACCTAAGCCAACCCACGAAACGGACGTGTGGGTGCTCAACCGACCGGAG
* * * * * *
20609968 AGGTAGAATGCGCAAGCCGTGGATCGGCTCGATCCCCCCTGCGTGCTGCCGA
450 AGGTAGAATGCGCAAGCCGAGGATAGGCCCGATCCCCCCTACGAGCTACCGA
* * * * * ** * *
20610020 TCTTACTGCCGCAACCCTCGGTCCTGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAA
1 TCCTGCTGCCGTAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGGTTAGAA
20610085 TAGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
66 T-GGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
20610133 AGGGCTCAGC
Statistics
Matches: 517, Mismatches: 87, Indels: 21
0.83 0.14 0.03
Matches are distributed among these distances:
500 4 0.01
501 382 0.74
502 131 0.25
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (501 bp):
TCCTGCTGCCGTAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGGTTAGAA
TGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTAAACCAGCCGGA
AAGGCAAAATGCAGAAACCGAGGACCTGACTGATTCCCCCCTACGTCTTGTCAATCCTACTACCA
CAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACCCCGTAAGCCTAAGCCAACCCACGAA
ACGAGCGTACGGGCACTGACCCGACCGAAGAGGCATAAGGCGCAAGTCGGGGATCAACCCGATCC
CCCTCTACCTGCTGTCGATCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATG
AACTACCTACACCTAAGCCAACCCACGAAACGGACGTGTGGGTGCTCAACCGACCGGAGAGGTAG
AATGCGCAAGCCGAGGATAGGCCCGATCCCCCCTACGAGCTACCGA
Found at i:20609924 original size:159 final size:158
Alignment explanation
Indices: 20609578--20610078 Score: 379
Period size: 158 Copynumber: 3.2 Consensus size: 158
20609568 CTCTGTATGG
* * * * * * * *
20609578 TTAGATTGGGGATGAACTCTGTATGCCTAAGTCAACCCACAAAAC-GAGCGTGCGGGTGTTCAGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGA-CGTGTGGGTGCTCACC
*** * * * * * ** * *
20609642 CGATTGGAAAGGCAGAATGCGTAAGCCGGGGACCGACTGGATCCCCCCTGCGT-CTTGTCAATCC
65 CGACCAGAGAGGCAGAATGCGCAAGCCGTGGATCAACCCGATCCCCCCTGCGTGC-TGCCGATCC
*** * * * * **
20609706 TATTGCCGCAACCCTCGGTCTGA-TCCGCTC
129 CGCTGCCACAACCCTTGGTCCGACT-GGGGC
* ** *
20609736 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATG-AATTGAC-TGTTCGGGTGCTGAC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGACGTG-T-GGGTGCTCAC
* * * * *
20609799 CCGGCCAGAGAGGCATAATGCGCAAGTCGTGGATCAACCCGGTCCCCCTCTGCGTGCTGTCGATC
64 CCGACCAGAGAGGCAGAATGCGCAAGCCGTGGATCAACCCGATCCCCC-CTGCGTGCTGCCGATC
20609864 CCGCTGCCACAACCCTTGGTCCGACTGGGGC
128 CCGCTGCCACAACCCTTGGTCCGACTGGGGC
*
20609895 TTAGACAT-GGAATGAACTACC-TATGCCTAAGCCAACCCACGAAACGGACGTGTGGGTGCTCAG
1 TTAGAC-TGGGAATGAACT-CCGTATGCCTAAGCCAACCCACGAAACGGACGTGTGGGTGCTCAC
* * ** * *
20609958 CCGACCGGAGAGGTAGAATGCGCAAGCCGTGGATCGGCTCGATCCCCCCTGCGTGCTGCCGATCT
64 CCGACCAGAGAGGCAGAATGCGCAAGCCGTGGATCAACCCGATCCCCCCTGCGTGCTGCCGATCC
** * * * ****
20610023 TACTGCCGCAACCCTCGGTCCTGTC-CAATC
129 CGCTGCCACAACCCTTGGTCC-GACTGGGGC
20610053 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
20610079 TTAGAATAGG
Statistics
Matches: 270, Mismatches: 60, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
156 2 0.01
157 6 0.02
158 132 0.49
159 117 0.43
160 11 0.04
161 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (158 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGACGTGTGGGTGCTCACCC
GACCAGAGAGGCAGAATGCGCAAGCCGTGGATCAACCCGATCCCCCCTGCGTGCTGCCGATCCCG
CTGCCACAACCCTTGGTCCGACTGGGGC
Found at i:20611464 original size:159 final size:158
Alignment explanation
Indices: 20611143--20611572 Score: 425
Period size: 159 Copynumber: 2.7 Consensus size: 158
20611133 CGATAGGGGA
** * * * * * *
20611143 TTAGACATAAAATGAACTTCGAATGCCTAAGGCAACCCACGAAACAAACGTGCGGGCCCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * *
20611208 AGTCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCCTGCGTGCTGCCCATCCT
66 -GTCGAAGAGGCAGAATGCGTAAGTCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGCCCATCCT
** *
20611273 GCTACCACAACCCTCGGTCCGGTCTAATC
130 GCTACCACAACCCTCGGTCCACTCTAAGC
** * *
20611302 TTAGAC-TGGGAATGAACTCCGTATGCCTAATTCAACCCACGAAACGAGCGTGCGGGTGCTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
20611366 CTGCCGAAGAGGCATAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGATCC
65 C-GTCGAAGAGGCAGAATGCGTAAGTCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGCCCAT-C
* **
20611431 CT-CTGCCACAACCCTCGGTCCACT-TGGGGC
128 CTGCTACCACAACCCTCGGTCCACTCT-AAGC
* * * * * * *
20611461 TTAGACATTGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGGGTGTGCAGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * *
20611526 GATCGAAGAGGCAGAATGCATAAGTAGGGGATTGGCTCGATCCCCCT
66 G-TCGAAGAGGCAGAATGCGTAAGTCGGGGATCGGCTCGGTCCCCCT
20611573 GCATGCTGCC
Statistics
Matches: 219, Mismatches: 47, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
158 3 0.01
159 212 0.97
160 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GTCGAAGAGGCAGAATGCGTAAGTCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGCCCATCCTG
CTACCACAACCCTCGGTCCACTCTAAGC
Found at i:20611634 original size:26 final size:27
Alignment explanation
Indices: 20611605--20611662 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 27
20611595 CCGGTCCGAT
*
20611605 CTTAGACTGGGAATGAACTCGATATG-
1 CTTAGACTGGGAATGAACTCCATATGC
*
20611631 CTTAGACTGGGGATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCATATGC
20611658 CTTAG
1 CTTAG
20611663 CGAACCCATG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCATATGC
Found at i:20612365 original size:26 final size:26
Alignment explanation
Indices: 20612327--20612379 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20612317 GGCTCAAACT
*
20612327 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCCTATG
20612353 CTTAGAC-ATGGAATGAACTCCCTATG
1 CTTAGACTA-GGAATGAACTCCCTATG
20612379 C
1 C
20612380 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCCTATG
Found at i:20612547 original size:26 final size:26
Alignment explanation
Indices: 20612511--20612563 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20612501 CTGAACCAAT
*
20612511 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
20612537 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20612563 C
1 C
20612564 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20613526 original size:158 final size:157
Alignment explanation
Indices: 20613247--20613779 Score: 548
Period size: 158 Copynumber: 3.4 Consensus size: 157
20613237 CTGCTGCTGG
* **
20613247 TCCTGCTACCGCAACCCTCAGTCCGGT-TCGATCTTAGACAGGGAATGAACTATGTATGCCTAAG
1 TCCTGCTACCGCAACCCTCCGTCCGGTCTCGATCTTAGACAGGGAATGAACTCCGTATGCCTAAG
* *
20613311 CCAACCCACGAAACAAGCGTGCGGGTGCTCAGCTGGCCAGAGAGGTAGAATGCGCAAGCCAGGGA
66 CCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCC-GAGAGGTAGAATGCGCAAGCC-GGGA
20613376 -CTGACCCGATCCCCCCTGCGTGCTGTCGC
129 TC-GACCCGATCCCCCCTGCGTGCTGTCGC
*
20613405 TCCTACTACCGCAACCCTCCGTCCGGTCT-GATCTTAGACTA-GGAATGAACTCCGTATGCCTAA
1 TCCTGCTACCGCAACCCTCCGTCCGGTCTCGATCTTAGAC-AGGGAATGAACTCCGTATGCCTAA
* ** * * * * *
20613468 GTCAACCCACGAAACGAGCGTGCAAGCGCTGAGCCGGCCGGAGAGGCATAATGCGCAAGTCGGGG
65 GCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCC-GAGAGGTAGAATGCGCAAG-CCGGG
* *
20613533 ATCGACCCGATCCCCCTCTGCATGCTGCTGGTC
128 ATCGACCCGATCCCCC-CTGCGTGCTG-TCG-C
* * * * ** * *
20613566 TCGTTGCCA-CG--ACCCTCCATCCGG-CTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAA
1 TC-CTGCTACCGCAACCCTCCGTCCGGTCTCGATCTTAGACAGGGAATGAACTCCGTATGCCTAA
* * * * *
20613627 GCCAA-CCACGAAACGGGCATGTGGGTGCTCAACCGGCTCGAGTGGTAGAATGCGCAAGCCGGGT
65 GCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGC-CGAGAGGTAGAATGCGCAAGCCGGG-
* * *
20613691 ATCGACCCGATCCCCTC-GATGTGCTGTCGA
128 ATCGACCCGATCCCCCCTG-CGTGCTGTCGC
* * * *
20613721 TCCTGTTGCCGCAACCCTCGGTCCGGTC-CGATCTTAGACTGGGAATGAACTCCGTATGC
1 TCCTGCTACCGCAACCCTCCGTCCGGTCTCGATCTTAGACAGGGAATGAACTCCGTATGC
20613780 TTAGACTGGG
Statistics
Matches: 304, Mismatches: 54, Indels: 35
0.77 0.14 0.09
Matches are distributed among these distances:
154 2 0.01
155 4 0.01
156 3 0.01
157 46 0.15
158 180 0.59
159 59 0.19
160 2 0.01
161 5 0.02
162 3 0.01
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.20
Consensus pattern (157 bp):
TCCTGCTACCGCAACCCTCCGTCCGGTCTCGATCTTAGACAGGGAATGAACTCCGTATGCCTAAG
CCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGAGAGGTAGAATGCGCAAGCCGGGATC
GACCCGATCCCCCCTGCGTGCTGTCGC
Found at i:20613804 original size:26 final size:26
Alignment explanation
Indices: 20613753--20613805 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20613743 CCGGTCCGAT
*
20613753 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
20613779 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20613805 C
1 C
20613806 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20615038 original size:26 final size:26
Alignment explanation
Indices: 20615009--20615087 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
20614999 CCGATCTGAT
*
20615009 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
20615035 CTTAGACTGGGGCTGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
20615061 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
20615087 C
1 C
20615088 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:20616137 original size:26 final size:26
Alignment explanation
Indices: 20616101--20616153 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20616091 CCGATCCAAT
*
20616101 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
20616127 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20616153 C
1 C
20616154 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20617620 original size:210 final size:210
Alignment explanation
Indices: 20617252--20617644 Score: 567
Period size: 210 Copynumber: 1.9 Consensus size: 210
20617242 AGCCAGTTGG
** *
20617252 AGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCTCCCTACATGCTGTCGATCCTACTGCT
1 AGAGGCAGAATGCGTAAGCCAAGGATCAGCCCGATCCCTCCCTACATGCTGTCGATCCTACTGCT
* * * * *
20617317 GGTCCTGCTGCTGCAACCCTCGGTCTGGTATGATCTTAGACTGGGAATGAACTCTATATGCTTAG
66 GGTCCTGCTCCTGCAACCCTCAGTCCGGTATGATCTTACACTGGGAATGAACTCCATATGCTTAG
*
20617382 ACATGAAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCAATCAATCGGTT
131 ACATGAAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTACGGGCAATCAATCGGTT
20617447 AGAGAAGCCGGCTAA
196 AGAGAAGCCGGCTAA
* * * * * *
20617462 AGAGGTAGAATGC-TCAAGCCAAGGATCAGCCCGGTCCTTCCCTACGTGTTG-CTGATCCTGCTG
1 AGAGGCAGAATGCGT-AAGCCAAGGATCAGCCCGATCCCTCCCTACATGCTGTC-GATCCTACTG
* * *
20617525 CTGGTCCTGCTCCTGCAACCCTTAGTCCGGTCTGATCTTACACTGGGAATGAAGC-CCGTATGCT
64 CTGGTCCTGCTCCTGCAACCCTCAGTCCGGTATGATCTTACACTGGGAATGAA-CTCCATATGCT
*
20617589 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTACGGGC
128 TAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTACGGGC
20617645 GCTTAGCCGA
Statistics
Matches: 161, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
209 2 0.01
210 158 0.98
211 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (210 bp):
AGAGGCAGAATGCGTAAGCCAAGGATCAGCCCGATCCCTCCCTACATGCTGTCGATCCTACTGCT
GGTCCTGCTCCTGCAACCCTCAGTCCGGTATGATCTTACACTGGGAATGAACTCCATATGCTTAG
ACATGAAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTACGGGCAATCAATCGGTT
AGAGAAGCCGGCTAA
Found at i:20617949 original size:159 final size:156
Alignment explanation
Indices: 20617588--20618004 Score: 444
Period size: 159 Copynumber: 2.6 Consensus size: 156
20617578 GCCCGTATGC
* *
20617588 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTACGGGCGCTTAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCG-TTAGCC
* ** * * * *
20617653 GATCGGAGAGGCAGAATGCACAAG-TCAAGGATCGACCCGGTCCCCCCTGTGTGCTATCGATCCT
64 GATCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGACCCGATCCCCCCTGCGTACTATCGATCCC
* * **
20617717 GCTACCACACCCCTTGGTCCGGTCTGATC
128 GCTACCACAACCCTCGGTCCGGTCTGAGA
* *
20617746 TTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGTTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCGTT-AGC
* * * * *
20617810 CGGTCAGAGAGGCATAATGCGCAAGCTGGGGATCGACCTGATCCCCCTCTGCGTACTGTCGATCC
63 CGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCC-CTGCGTACTATCGATCC
* *
20617875 CGCTGCCACAACCCTCGGTCCGG-CTGGGGA
127 CGCTACCACAACCCTCGGTCCGGTCT-GAGA
* * * * * *
20617905 TTAGACATGGAATTAACTCCCTATGCCTAAGCAAACCAACGAAACGCGCGTGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCATGAAACGAGCGTGCGGGCG-TTAGCC
* * *
20617970 AACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA
64 GATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGA
20618005 ATGGGTGGTA
Statistics
Matches: 214, Mismatches: 37, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
157 3 0.01
158 94 0.44
159 115 0.54
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (156 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGCGTGCGGGCGTTAGCCGA
TCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTGCGTACTATCGATCCCGCT
ACCACAACCCTCGGTCCGGTCTGAGA
Found at i:20618920 original size:26 final size:26
Alignment explanation
Indices: 20618891--20618943 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20618881 CCGGTTCAAT
20618891 CTTAGACT-GGGACTGAACTCCGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
*
20618917 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
20618943 C
1 C
20618944 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:20619549 original size:159 final size:158
Alignment explanation
Indices: 20619275--20619727 Score: 436
Period size: 159 Copynumber: 2.9 Consensus size: 158
20619265 AACTCTGCAT
* * * * **
20619275 GCTTAGTCATGGAATGAACTCCGTATGCCTAAGCCAACCTA-TGAAACGAGCGTGCAGGCACTTT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACT-AAATGAGCGTTCAGGCACTCA
* * * * * *
20619339 GCCGGTCGGAGAGGCAGACTACACAAGCTAGGGACCGGCCTGGTCCACCTCTGCGTGCTGTCGAT
65 GCCGATCGGAGAGGCATAATGCACAAGCTGGGGATCGGCCTGGTCCACCTCTGCGTGCTGTCGAT
*
20619404 CCTGCTGCCACAACCATCAGT-ATGGTCCCA
130 CCTGCTGCCACAACCATCAGTCA-GCT-CCA
* * *
20619434 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACTAAATGAGCGTTCAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACTAAATGAGCGTTCAGGCACTCA
* * * *
20619498 GCCAATCGGAGAGGCATAATGCGCAAGCTGGGGATCGG-TTCGATTCC-CCTCTGCGTGCTGTCG
65 GCCGATCGGAGAGGCATAATGCACAAGCTGGGGATCGGCCT-G-GTCCACCTCTGCGTGCTGTCG
* * ***
20619561 GTCCTGCTGCCACAACCCTCAGTCCAGCTGGG
128 ATCCTGCTGCCACAACCATCAGT-CAGCTCCA
* * * *
20619593 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG-GCCGTGT-GGGCGCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACTAAATGAG-CGT-TCAGGCACTC
** * * * * **
20619656 AATCGATCGGAGAGGCATAATGCACAAGCTGGGGATCGGGCTTGTCC-CCCCTGTGTGCTACCGA
64 AGCCGATCGGAGAGGCATAATGCACAAGCTGGGGATCGGCCTGGTCCACCTCTGCGTGCTGTCGA
20619720 TCCTGCTG
129 TCCTGCTG
20619728 TCGTAACCCT
Statistics
Matches: 241, Mismatches: 43, Indels: 21
0.79 0.14 0.07
Matches are distributed among these distances:
158 26 0.11
159 205 0.85
160 9 0.04
161 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACTAAATGAGCGTTCAGGCACTCAG
CCGATCGGAGAGGCATAATGCACAAGCTGGGGATCGGCCTGGTCCACCTCTGCGTGCTGTCGATC
CTGCTGCCACAACCATCAGTCAGCTCCA
Found at i:20619781 original size:26 final size:26
Alignment explanation
Indices: 20619752--20619804 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20619742 CCAGTCTGAT
*
20619752 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
20619778 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
20619804 C
1 C
20619805 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:20620567 original size:159 final size:157
Alignment explanation
Indices: 20620141--20620569 Score: 429
Period size: 159 Copynumber: 2.7 Consensus size: 157
20620131 AACTCCATAT
* ** * * *
20620141 GCTTAGACATGGAATGAACTTTGTATAACTAAGCCAACCCACAAAATGAACGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCAGGTGCTCAG
* * * *
20620206 CCGACCGGAGAGGCAAAATGTGCAAGTCGAGGATTGGCCCGAT-CCCCTTGCGTGCTGTCGATCC
66 CCGACCGGAAAGGCAAAATGCGCAAGTCGGGGATCGGCCCG-TCCCCCTTGCGTGCTGTCGATCC
*** *
20620270 TGTTGCCGCAACCCTCAGTTCGGTCTGA
130 CACTGCCACAACCCTCAGTTCGGTCTGA
* * *
20620298 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCAGGTGCTAA
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCAGGTGCTCA
* * * * * * *
20620362 GCCGATC-GAAGAGGCATAATGCGTAAGCCGGGGATCAGCCTGGTCCCCCTCTGCGTGCTGTCGG
65 GCCGACCGGAA-AGGCAAAATGCGCAAGTCGGGGATCGGCC-CGTCCCCCT-TGCGTGCTGTCGA
*
20620426 TCCCACTGCCACAACCCTC-GATCTC-G-CTGGG
127 TCCCACTGCCACAACCCTCAG-T-TCGGTCT-GA
* * * * * *
20620457 GCTTAGACATGGAAAGAACTTCCTATGCCTAGGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCAGGTGCTCAG
* * *
20620522 CCGGCCGGAAAGGCAGAATGCACAAGTCGGGGATCGGCCCAGTCCCCC
66 CCGACCGGAAAGGCAAAATGCGCAAGTCGGGGATCGGCCC-GTCCCCC
20620570 CTGTGCACTG
Statistics
Matches: 219, Mismatches: 42, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
156 3 0.01
157 82 0.37
158 9 0.04
159 119 0.54
160 6 0.03
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCAGGTGCTCAG
CCGACCGGAAAGGCAAAATGCGCAAGTCGGGGATCGGCCCGTCCCCCTTGCGTGCTGTCGATCCC
ACTGCCACAACCCTCAGTTCGGTCTGA
Found at i:20621263 original size:11 final size:11
Alignment explanation
Indices: 20621247--20621274 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
20621237 CGGTTAGGCT
20621247 CTCCGACGATG
1 CTCCGACGATG
20621258 CTCCGACGATG
1 CTCCGACGATG
20621269 CTCCGA
1 CTCCGA
20621275 AAATGGTGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.18, C:0.39, G:0.25, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:20621887 original size:25 final size:26
Alignment explanation
Indices: 20621859--20621909 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
20621849 TCTGGTCCGA
* *
20621859 TCTTAG-CTGGGAATTAACTCTGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
*
20621884 TCTTAGACTGGGGATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
20621910 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:20621961 original size:195 final size:197
Alignment explanation
Indices: 20621584--20622010 Score: 536
Period size: 195 Copynumber: 2.2 Consensus size: 197
20621574 TAGGAGAAGC
* *
20621584 AGAATGCGCAAGCCGGGGATCGGCCTAGTCCCTCCTACGTGTTGTCGATCTTGCTACCGCAACTC
1 AGAATGCACAAGCCGGGGATCGGCCCAGTCCCTCCTACGTGTTGTCGATCTTGCTACCGCAACTC
* **
20621649 GTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTTGTA
66 CTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTA
* * * * ** * * *
20621714 TGCCTAATTCAACCCATGAAACGAGCATGCGGGCACTCAGTCGGCTGGAGAGGCCGGTCGAAGAG
131 TGCCTAAGTCAACCCATAAAACGAGCATGCAGGCACTAAACCGACCGGAGAGGCCAGTCGAAGAG
20621779 GT
196 GT
* * * * ** *
20621781 GGAATGCCCAAGTCGGGGATCAGCCCAGTCCC-CCTACGTGTTGTCGATCTTGCTGTCGTAAC-C
1 AGAATGCACAAGCCGGGGATCGGCCCAGTCCCTCCTACGTGTTGTCGATCTTGCTACCGCAACTC
* * *
20621844 CTCGGTCTGGTCCGATCTTAG-CTGGGAATTAACTCTGTATTCTTAGACTGGGGATGAACTCCGT
66 CT-GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGT
* ** * *
20621908 ATGCCTAAGTCAACCCATAAAACGAGCGTGCAGGTGCTAAACCGACCGGAGAGGTCAGTCGGAGA
130 ATGCCTAAGTCAACCCATAAAACGAGCATGCAGGCACTAAACCGACCGGAGAGGCCAGTCGAAGA
20621973 GGT
195 GGT
* * *
20621976 AGAATGCATAAGCCAGGGATCGGCCCAGTCACTCC
1 AGAATGCACAAGCCGGGGATCGGCCCAGTCCCTCC
20622011 CTGCGTGCTG
Statistics
Matches: 193, Mismatches: 35, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
195 119 0.62
196 47 0.24
197 27 0.14
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.23
Consensus pattern (197 bp):
AGAATGCACAAGCCGGGGATCGGCCCAGTCCCTCCTACGTGTTGTCGATCTTGCTACCGCAACTC
CTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTA
TGCCTAAGTCAACCCATAAAACGAGCATGCAGGCACTAAACCGACCGGAGAGGCCAGTCGAAGAG
GT
Found at i:20622604 original size:26 final size:26
Alignment explanation
Indices: 20622568--20622620 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20622558 CCAGTCTGAT
20622568 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* * *
20622594 CTTACACTGGGGATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
20622620 C
1 C
20622621 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:20622959 original size:171 final size:171
Alignment explanation
Indices: 20622671--20623011 Score: 423
Period size: 171 Copynumber: 2.0 Consensus size: 171
20622661 GTCGGAGAGG
* * * *
20622671 CCGGTTGGAGAGGCATAATACGCAAGCCCTAGATCAGCTCGATCCCCCTCTATGTGCTACCGATC
1 CCGGTTGGAGAGGCAGAATACGCAAGCCCGAGATCAGCTCGATCCCCCCCTACGTGCTACCGATC
* * *
20622736 CCGCTGCCGGTCCTGCTACCACAACCCTCGGTCCGGCTAGGGCTTGGACATGGAATGAACTCCGT
66 CCGCTGCCGGTCCTGCTACCACAACCCTCGGTCCGGCTAGAGCATAGACATGGAATGAACTCCGT
*
20622801 ATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGGCACTCAA
131 ATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCACTCAA
* * * * * * * *
20622842 CCGGTTGGAGAGGTAGAATGCGCAAGTCGGAGTTCAGCTCGGTCCCCCCCTGCGTGCTACCGTTC
1 CCGGTTGGAGAGGCAGAATACGCAAGCCCGAGATCAGCTCGATCCCCCCCTACGTGCTACCGATC
* * * * * **
20622907 CTGCTGCTGGTCCTGCTACCGCAACCCTCGGTCTGGTCT-GATCATAGACATGGAATGAACTTTG
66 CCGCTGCCGGTCCTGCTACCACAACCCTCGGTCCGG-CTAGAGCATAGACATGGAATGAACTCCG
* * * *
20622971 TATGCCTAAGCCAATCCATGAAACGAGTGTGTGGGCACTCA
130 TATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCACTCA
20623012 GACGGCCCCC
Statistics
Matches: 142, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
171 140 0.99
172 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.21
Consensus pattern (171 bp):
CCGGTTGGAGAGGCAGAATACGCAAGCCCGAGATCAGCTCGATCCCCCCCTACGTGCTACCGATC
CCGCTGCCGGTCCTGCTACCACAACCCTCGGTCCGGCTAGAGCATAGACATGGAATGAACTCCGT
ATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCACTCAA
Found at i:20624247 original size:26 final size:26
Alignment explanation
Indices: 20624218--20624270 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20624208 CTGGTTCGAT
*
20624218 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20624244 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20624270 C
1 C
20624271 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20624650 original size:26 final size:26
Alignment explanation
Indices: 20624598--20624650 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20624588 CCAGTCCGAT
*
20624598 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
20624624 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
20624650 C
1 C
20624651 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:20625015 original size:159 final size:157
Alignment explanation
Indices: 20624623--20625023 Score: 425
Period size: 159 Copynumber: 2.5 Consensus size: 157
20624613 AACTCTGCAT
* * *
20624623 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACGAAATGAGCGTGCGAGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAA
* * *
20624688 TCGATCGGGGAGGTAGAATGCACAAGTCGGGGATCGGCCTGATCCCCCCTACGTGCTATCAATCC
66 CCG-TCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCTGATCCCCCCTACGTGCTATCAATCC
* **
20624753 TACTACCGTAACCCTCAGTCCGATCTGA
130 CACTACCACAACCCTCAGTCCGATCTGA
* * * * * *
20624781 TCTTAGAC-TACGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGATGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCA
* * * * * *
20624845 GCCAGTCGGAGAGGCATAATGCGA-AAGTCGGGGATCGATCC-GGTCCCCCTCTGCGTGCTATCG
65 ACC-GTCGGAGAGGCAGAATGC-ACAAGTCGGGGATCG-GCCTGATCCCCC-CTACGTGCTATCA
* ** * *
20624908 GTCCCACTGTCACAACCCTCGGTCCGAATGTG-
126 ATCCCACTACCACAACCCTCAGTCCG-ATCTGA
* *
20624940 GCTTAGACATGGAATGAACT-CTTAATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGT-ATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCA
*
20625004 ACCGGCTGGAGAGGCAGAAT
65 ACCGTC-GGAGAGGCAGAAT
20625024 CCGCAAGCCA
Statistics
Matches: 197, Mismatches: 37, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
157 1 0.01
158 92 0.47
159 99 0.50
160 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAA
CCGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCTGATCCCCCCTACGTGCTATCAATCCC
ACTACCACAACCCTCAGTCCGATCTGA
Found at i:20625140 original size:26 final size:26
Alignment explanation
Indices: 20625099--20625151 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20625089 CCGTTTCAAT
*
20625099 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
* *
20625125 CTTAGACTAGGTATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
20625151 C
1 C
20625152 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCAGTATG
Found at i:20625679 original size:881 final size:880
Alignment explanation
Indices: 20623976--20625777 Score: 2138
Period size: 881 Copynumber: 2.0 Consensus size: 880
20623966 CCGGTCGAAT
* **
20623976 AGGCATAATGC-ACAAGTCGGGGATC-AGCCCGATACCCCTCTGTGTGCTATCGGTCTTACTGCC
1 AGGCATAATGCGA-AAGTCGGGGATCGAGCCCGATACCCCTCTGCGTGCTATCGGTCCCACTGCC
*
20624039 ACAACCCTCGGTCCGGTTGGCATTAGACATGGAATAAACTCCCTATCCCTAAGCCAACCCACGAA
65 ACAACCCTCGGTCCGATTGGCATTAGACATGGAATAAACTCCCTATCCCTAAGCCAACCCACGAA
* ** * * * * *
20624104 ACGGGCGCACAGGCGCTCAGCCGGCCCGAGAGGCAGAATGGGTAACCCGGGGATTGGCCTGGTCC
130 ACGGGCGCACAGGCGCTCAACCGGCCCGAGAGGCAGAATCCGCAACCCAGAGATCGGCCCGGTCC
* * * * * * *
20624169 CCCCTGCGTGCTGCCGATCCTACTGCCGTAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGA
195 CCCCTGCATGCTACCGATCCTACTACCGCAACCCTCGATCCGGTTCAATCTTAGACTGGGAATGA
* * *
20624234 ACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGATACGAGCATGCG
260 ACTTCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCG
* ** * * *
20624299 GGCGCTCAGTCGACCGAAAAAGCCGGTCGGAGAGGCATAATGCGCAAGCTAGGGATCAGCTTGAT
325 GGCGCTCAGTCCACCGAAAAAGCCGACCAGAGAGGCATAATGCGCAAGCGAGGGATCAGCTCGAT
* * * * *
20624364 CCCCCTCTGCGTGCTGCCGTTCCCGCTGCCGGTCCCGTTGCCACAACCCTCGGTCCGACTGGGGC
390 CCCCCACTGCATGCTACCGATCCCGCTGCAGGTCCCGTTGCCACAACCCTCGGTCCGACTGGGGC
* ** * ** * *
20624429 TTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGGAATGAGTGTGCGAGGGCTCTATC
455 TTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAATGAGCATACGAGCACTCAACC
* * * *
20624494 GGCCGGAGAGGCAGAATGCGTAAACCAAGGATCTGTCCAGTCCCCCATGAGTGCTCCCGATCCTA
520 AGCCGGAGAGGCAGAATGCGCAAACCAAGGATCAGCCCAGTCCCCCATGAGTGCTCCCGATCCTA
* * **
20624559 CTGCTAGTCCTGCTACCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCTGCATG
585 CTGCTAGTCCTGCTACCACAACCCTCGATCCAGTCCGATCTTAGACTGGGAATAAACTCCACATG
* * *
20624624 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACGAAATGAGCGTGCGAGCGCTCAAT
650 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGAGCGCTCAAC
** * * *
20624689 CGATCGGGGAGGTAGAATGCACAAGTCGGGGATCGGCCTGATCCCCCCTACGTGCTATCAATCCT
715 CGATCGAAGAGATAGAATGCACAAGTCGGGGACCGGCCCGATCCCCCCTACGTGCTATCAATCCT
* *
20624754 ACTACCGTAACCCTCAGTCCGATCTGATCTTAGACTACGAATGAACTCCGTATGCCTAAGTCAAC
780 ACCACCGCAACCCTCAGTCCGATCTGATCTTAGACTACGAATGAACTCCGTATGCCTAAGTCAAC
** *
20624819 CCATGAAATGAGCGTGCG-GGTGATGAGCCAG-TCGGAG
845 CCATGAAACAAGCGTGCGACGT--TGAGCCAGCT-GGAG
* * * *
20624856 AGGCATAATGCGAAAGTCGGGGATCGA-TCCGGTCCCCCTCTGCGTGCTATCGGTCCCACTGTCA
1 AGGCATAATGCGAAAGTCGGGGATCGAGCCCGATACCCCTCTGCGTGCTATCGGTCCCACTGCCA
* * *
20624920 CAACCCTCGGTCCGAATGTGGC-TTAGACATGGAATGAACT-CTTAATGCCTAAGCCAACCCACG
66 CAACCCTCGGTCCG-AT-TGGCATTAGACATGGAATAAACTCCCT-ATCCCTAAGCCAACCCACG
* ** * * ** *
20624983 AAATGGGCGTGCGGGTGCTCAACCGGCTGGAGAGGCAGAATCCGCAAGCCAGAGATCGGCCCGGT
128 AAACGGGCGCACAGGCGCTCAACCGGCCCGAGAGGCAGAATCCGCAACCCAGAGATCGGCCCGGT
* * *
20625048 GCCCCCTGCATGCTACCGATCCTGCTACCGCAACCCTCGATCCGTTTCAATCTTAGACTGGGAAT
193 CCCCCCTGCATGCTACCGATCCTACTACCGCAACCCTCGATCCGGTTCAATCTTAGACTGGGAAT
* * *
20625113 GAAC-TCAGTATGCTTAGACTAGGTATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGT
258 GAACTTC-GTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCAT
* * * * *
20625177 GC-GGTGCTCAG-CCAGCTAGAGAGGCCGACCAGAGAGGCATAATGCGCAAGCCGA-GGATCAGC
322 GCGGGCGCTCAGTCCACCGA-AAAAGCCGACCAGAGAGGCATAATGCGCAAG-CGAGGGATCAGC
* * * *
20625239 TCGATCCCCCACTGCATGCTATCGATCTCGCTGCAGGTCCTGTTGCCACAACCCTCGGTCCGGCT
385 TCGATCCCCCACTGCATGCTACCGATCCCGCTGCAGGTCCCGTTGCCACAACCCTCGGTCCGACT
* **
20625304 GGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATTAAATGAGCATACGAGCACT
450 GGGGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAATGAGCATACGAGCACT
* * * * * **
20625369 CAACCAGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCC-GATCCCCTCCTGCGTGCTGTC
515 CAACCAGCCGGAGAGGCAGAATGCGCAAACCAAGGATCAGCCCAG-TCCCC-CATGAGTGCTCCC
* *** * * * *
20625433 GATCCTACTGCTGGTCCTGCTGTTACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATAAACT
578 GATCCTACTGCTAGTCCTGCTACCACAACCCTCGATCCAGTCCGATCTTAGACTGGGAATAAACT
* * * * *
20625498 CCATATGCTTATACATGGAATGAACTCCGTATGCTTAAGCCAACCCATAAAATGAGCGTGCGGGC
643 CCACATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGAGC
* * * ** * * *
20625563 GTTCAGCC-AGCTGAAGAGATAGAATGCGTAAGTCGGGGACCGGCCCGGTGCCCCCTACGTGCTG
708 GCTCAACCGATC-GAAGAGATAGAATGCACAAGTCGGGGACCGGCCCGATCCCCCCTACGTGCTA
* * * * * * * * ** *
20625627 TCGATCCTGCCGCTGCAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTTCGTATGCCT
772 TCAATCCTACCACCGCAACCCTCAGTCCGATCTGATCTTAGACTACGAATGAACTCCGTATGCCT
*
20625692 AAGTCAACCCATGAAACAATCGTGCGACGTTGAGCCAGCTGGAG
837 AAGTCAACCCATGAAACAAGCGTGCGACGTTGAGCCAGCTGGAG
* * * *
20625736 AGGCATAATGCGCAAGCCGGGGATCG-GCCTGATCCCCCTCTG
1 AGGCATAATGCGAAAGTCGGGGATCGAGCCCGATACCCCTCTG
20625778 TGCAAGCCGA
Statistics
Matches: 768, Mismatches: 140, Indels: 28
0.82 0.15 0.03
Matches are distributed among these distances:
879 5 0.01
880 313 0.41
881 444 0.58
882 6 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (880 bp):
AGGCATAATGCGAAAGTCGGGGATCGAGCCCGATACCCCTCTGCGTGCTATCGGTCCCACTGCCA
CAACCCTCGGTCCGATTGGCATTAGACATGGAATAAACTCCCTATCCCTAAGCCAACCCACGAAA
CGGGCGCACAGGCGCTCAACCGGCCCGAGAGGCAGAATCCGCAACCCAGAGATCGGCCCGGTCCC
CCCTGCATGCTACCGATCCTACTACCGCAACCCTCGATCCGGTTCAATCTTAGACTGGGAATGAA
CTTCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGG
GCGCTCAGTCCACCGAAAAAGCCGACCAGAGAGGCATAATGCGCAAGCGAGGGATCAGCTCGATC
CCCCACTGCATGCTACCGATCCCGCTGCAGGTCCCGTTGCCACAACCCTCGGTCCGACTGGGGCT
TAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAATGAGCATACGAGCACTCAACCA
GCCGGAGAGGCAGAATGCGCAAACCAAGGATCAGCCCAGTCCCCCATGAGTGCTCCCGATCCTAC
TGCTAGTCCTGCTACCACAACCCTCGATCCAGTCCGATCTTAGACTGGGAATAAACTCCACATGC
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGAGCGCTCAACC
GATCGAAGAGATAGAATGCACAAGTCGGGGACCGGCCCGATCCCCCCTACGTGCTATCAATCCTA
CCACCGCAACCCTCAGTCCGATCTGATCTTAGACTACGAATGAACTCCGTATGCCTAAGTCAACC
CATGAAACAAGCGTGCGACGTTGAGCCAGCTGGAG
Found at i:20626311 original size:11 final size:11
Alignment explanation
Indices: 20626289--20626332 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
20626279 CGGTTAGGCT
*
20626289 CTCCGACGATG
1 CTCCGGCGATG
*
20626300 CTCTGGCGATG
1 CTCCGGCGATG
20626311 CTCCGGCGATG
1 CTCCGGCGATG
*
20626322 CTCCGACGATG
1 CTCCGGCGATG
20626333 GTGCCCCGGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.14, C:0.34, G:0.32, T:0.20
Consensus pattern (11 bp):
CTCCGGCGATG
Found at i:20626439 original size:26 final size:26
Alignment explanation
Indices: 20626401--20626453 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20626391 GGCTCAAACT
* *
20626401 CTTAGTCAGGGAATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
* *
20626427 CTTAGACAAGGAATGAAGTCCTTATG
1 CTTAGACAAGGAATGAACTCCATATG
20626453 C
1 C
20626454 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:20626622 original size:26 final size:26
Alignment explanation
Indices: 20626586--20626638 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20626576 CTAATTAGAT
*
20626586 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20626612 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20626638 C
1 C
20626639 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20627282 original size:26 final size:26
Alignment explanation
Indices: 20627253--20627305 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20627243 CCGATCCAAT
*
20627253 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
20627279 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20627305 C
1 C
20627306 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20628004 original size:26 final size:26
Alignment explanation
Indices: 20627966--20628018 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20627956 GTTCCAAACT
20627966 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20627992 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
20628018 C
1 C
20628019 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20628345 original size:26 final size:26
Alignment explanation
Indices: 20628309--20628361 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20628299 CTGGTTTAAT
20628309 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
20628335 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20628361 C
1 C
20628362 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20628593 original size:330 final size:331
Alignment explanation
Indices: 20628066--20628718 Score: 848
Period size: 330 Copynumber: 2.0 Consensus size: 331
20628056 CAGGCCGAAG
* *
20628066 AGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCTTTTCGTGCTGTCGATCCCACTGCCAC
1 AGGCAAAATGCGCAAGCCGGGGATCGACCTGGTCCCCC-TTGCGTGCTGTCGATCCCACTGCCAC
*
20628131 AACCCTCAGTCCAACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAA
65 AACCCTCAGTCCAACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAACCCAACCCACGAAA
* * * * *
20628196 TGGGTGTGCGGGCGCTCAGCCTGTCGGAGAGGTAAAATGCACAAGTTGGGGATCGACCCGATCCC
130 TGGGCGTACGGGCGCTCAGCCGGTCGGAGAGGCAAAATGCACAAGTTGAGGATCGACCCGATCCC
* * * * * ** ** *
20628261 CCCTGCGTGCTATCGATCCTGTTGCCGCAACCCTCGGTCTGGTTTAATCTTAGACTGGGAATGAA
195 CCCTACGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCAGTCCAATCTTAGACTGAGAATGAA
* * *
20628326 CTCCATATGCTTAGATTGGGGATGAACTCCGTATGCCTAGGTCAACCCATGAAACGAACGTACTG
260 CTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTACTG
20628391 GCCGGAT
325 GCCGGAT
* * *
20628398 AGGCAAAATGCGCAAGTCGGGGATCGGTCC-GGTCCCTCC-TGCGTGCTGTCGATCCCACTGTCA
1 AGGCAAAATGCGCAAGCCGGGGATC-GACCTGGTCCC-CCTTGCGTGCTGTCGATCCCACTGCCA
* *** * * *
20628461 CAACCCTCGGAT-TGGCTGGGG-TTAGACGTGGAATGAACTCCCTATGCCTAACCCAACCCATGA
64 CAACCCTCAG-TCCAACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAACCCAACCCACGA
* * * * * *
20628524 AATGGGCGTACGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGTTGAGGATC-AGTCTGGT
128 AATGGGCGTACGGGCGCTCAGCCGGTCGGAGAGGCAAAATGCACAAGTTGAGGATCGA-CCCGAT
*
20628588 CCCCCCTACGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCAGTCCGATCTTAGACTGAGAAT
192 CCCCCCTACGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCAGTCCAATCTTAGACTGAGAAT
* * * *
20628653 GAACTCCATATGCTTAGACTGGGGATGAACTCTGTTTGTCTAAGTCAACCCACGAAACGAGCGTA
257 GAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTA
20628718 C
322 C
20628719 GGGCACTCAG
Statistics
Matches: 275, Mismatches: 42, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
329 1 0.00
330 202 0.73
331 37 0.13
332 30 0.11
333 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (331 bp):
AGGCAAAATGCGCAAGCCGGGGATCGACCTGGTCCCCCTTGCGTGCTGTCGATCCCACTGCCACA
ACCCTCAGTCCAACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAACCCAACCCACGAAAT
GGGCGTACGGGCGCTCAGCCGGTCGGAGAGGCAAAATGCACAAGTTGAGGATCGACCCGATCCCC
CCTACGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCAGTCCAATCTTAGACTGAGAATGAAC
TCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTACTGG
CCGGAT
Found at i:20628951 original size:159 final size:159
Alignment explanation
Indices: 20628662--20628953 Score: 521
Period size: 159 Copynumber: 1.8 Consensus size: 159
20628652 TGAACTCCAT
* * *
20628662 ATGCTTAGACTGGGGATGAACTCTGTTTGTCTAAGTCAACCCACGAAACGAGCGTACGGGCACTC
1 ATGCTTAGACTGGGGATGAACTCCGTCTGTCTAAGTCAACCCACGAAACAAGCGTACGGGCACTC
* *
20628727 AGTCGACTGGAGAGGCATAATTTGCCAGTCGGGGATCAGCCCTATCCCCCTCTGCATGCTATCGA
66 AGCCGACTAGAGAGGCATAATTTGCCAGTCGGGGATCAGCCCTATCCCCCTCTGCATGCTATCGA
20628792 TCCCGCTGCCGGTCCTGCTGCCACAACCC
131 TCCCGCTGCCGGTCCTGCTGCCACAACCC
* *
20628821 ATGCTTGGACTGGGGATGAACTCCGTCTGTCTAAGTCAACCCATGAAACAAGCGTACGGGCACTC
1 ATGCTTAGACTGGGGATGAACTCCGTCTGTCTAAGTCAACCCACGAAACAAGCGTACGGGCACTC
20628886 AGCCGACTAGAGAGGCATAATTTGCCAGTCGGGGATCAGCCCTATCCCCCTCTGCATGCTATCGA
66 AGCCGACTAGAGAGGCATAATTTGCCAGTCGGGGATCAGCCCTATCCCCCTCTGCATGCTATCGA
20628951 TCC
131 TCC
20628954 TGTTGCCACA
Statistics
Matches: 126, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
159 126 1.00
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (159 bp):
ATGCTTAGACTGGGGATGAACTCCGTCTGTCTAAGTCAACCCACGAAACAAGCGTACGGGCACTC
AGCCGACTAGAGAGGCATAATTTGCCAGTCGGGGATCAGCCCTATCCCCCTCTGCATGCTATCGA
TCCCGCTGCCGGTCCTGCTGCCACAACCC
Found at i:20629020 original size:159 final size:159
Alignment explanation
Indices: 20628664--20629117 Score: 476
Period size: 159 Copynumber: 2.9 Consensus size: 159
20628654 AACTCCATAT
* * **
20628664 GCTTAGACTGGGGATGAACTCTGTTTGTCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAG
1 GCTTAGACTGGGAATGAACTCCGAATGTCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAG
20628729 TCGACTGGAGAGGCATAATTTGCCAGTCGGGGATCAGCCCTATCCCCCTCTGCATGCTATCGATC
66 TCGACTGGAGAGGCATAATTTGCCAGTCGGGGATCAGCCCTATCCCCCTCTGCATGCTATCGATC
* *** * *
20628794 CCGCTGCCGGTCCTGCTGCCACAACCCAT
131 CTGCTGCCAACCCTGCGGCCACAACCCAG
* * ** * *
20628823 GCTTGGACTGGGGATGAACTCCGTCTGTCTAAGTCAACCCATGAAACAAGCGTACGGGCACTCAG
1 GCTTAGACTGGGAATGAACTCCGAATGTCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAG
* *
20628888 CCGACTAGAGAGGCATAATTTGCCAGTCGGGGATCAGCCCTATCCCCCTCTGCATGCTATCGATC
66 TCGACTGGAGAGGCATAATTTGCCAGTCGGGGATCAGCCCTATCCCCCTCTGCATGCTATCGATC
* * * ***
20628953 CTGTTGCCACAACCCT-CGGTC-CGACTGGG
131 CTGCTG-C-CAACCCTGCGGCCACAACCCAG
* *
20628982 GCTTAGACAT-GGAATGAACTCCGAAT-TCCTAA-TCCAACCCACGAAATGAGCGTACGAG-AGC
1 GCTTAGAC-TGGGAATGAACTCCGAATGT-CTAAGT-CAACCCACGAAACGAGCGTACGGGCA-C
* * * ** *
20629043 TCAGTCGGCTGGAGAGGCA-GA-TTGCGCAAGCCAAGGATCAGCCCGATCCCCC-CTGCATGCTA
62 TCAGTCGACTGGAGAGGCATAATTTGC-C-AGTCGGGGATCAGCCCTATCCCCCTCTGCATGCTA
*
20629105 CCGATCCTGCTGC
125 TCGATCCTGCTGC
20629118 TGGTCCTACT
Statistics
Matches: 250, Mismatches: 37, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
157 5 0.02
158 25 0.10
159 211 0.84
160 5 0.02
161 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.20
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCGAATGTCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAG
TCGACTGGAGAGGCATAATTTGCCAGTCGGGGATCAGCCCTATCCCCCTCTGCATGCTATCGATC
CTGCTGCCAACCCTGCGGCCACAACCCAG
Found at i:20630303 original size:26 final size:26
Alignment explanation
Indices: 20630274--20630329 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
20630264 CCGGTCCGAT
20630274 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
20630300 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20630326 CTTA
1 CTTA
20630330 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20630679 original size:26 final size:26
Alignment explanation
Indices: 20630641--20630691 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20630631 CCGATCTGAT
20630641 CTTAGACTAGGAATGAACTCAGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
*
20630667 CTTAGACGT-GGAATGAACTCCGTAT
1 CTTAGAC-TAGGAATGAACTCAGTAT
20630692 CCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCAGTATG
Found at i:20630689 original size:183 final size:183
Alignment explanation
Indices: 20630483--20630843 Score: 499
Period size: 183 Copynumber: 2.0 Consensus size: 183
20630473 TCCGACTGGG
* * *
20630483 GCTTAGACATGGAATGAACTCCGTATACCTAAGCTAACCCACAAAACGAGCGTG-CGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTGACGGCGCTCAA
* * * * * *
20630547 CCAGCCGGAGAGGCAGAATGTGCAAGCTGGGGAACGACTCGTTCCCCCCTACGTGCTGTCGATCC
66 CCAGCCGGAGAGGCAGAATGCGCAAG-TCGAGAACAACCCGATCCCCCCTACGTGCTGTCGATCC
*
20630612 TGCTGCCACAACCCTAGATCCGATCTGATCTTAGACTAGGAATGAACTCAGTAT
130 TGCTACCACAACCCTAGATCCGATCTGATCTTAGACTAGGAATGAACTCAGTAT
* * ** *
20630666 GCTTAGACGTGGAATGAACTCCGTATCCCTAAGCCAACCCATGAAACGAGCGTGAGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTGACGGCGCTCAA
* * * *
20630731 CCGGCCGGAGAGGCAGAATGCGCAAGTCGAGATCAACCCGATCCCCCCTATGTGCTGTTGATCCT
66 CCAGCCGGAGAGGCAGAATGCGCAAGTCGAGAACAACCCGATCCCCCCTACGTGCTGTCGATCCT
* * * *
20630796 GCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
131 GCTACCACAACCCTAGATCCGATCTGATCTTAGACTAGGAATGAACTC
20630844 CGTAACCCAT
Statistics
Matches: 154, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
183 123 0.80
184 31 0.20
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTGACGGCGCTCAA
CCAGCCGGAGAGGCAGAATGCGCAAGTCGAGAACAACCCGATCCCCCCTACGTGCTGTCGATCCT
GCTACCACAACCCTAGATCCGATCTGATCTTAGACTAGGAATGAACTCAGTAT
Found at i:20631165 original size:26 final size:26
Alignment explanation
Indices: 20631129--20631184 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
20631119 CCGATCTGAT
*
20631129 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
20631155 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20631181 CTTA
1 CTTA
20631185 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20631313 original size:184 final size:183
Alignment explanation
Indices: 20630984--20631333 Score: 427
Period size: 184 Copynumber: 1.9 Consensus size: 183
20630974 TAGACATGTA
* * *
20630984 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGAGGGCACTCAGGCACAAGAGAGGT
1 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGAGGGCACTCAGGCACAAGAGAGGC
* * **
20631049 AGAATGCGTAAACCGAGGATAGACCCGATCCCCCTTACGTGCTACCAATCCTACTGTCGTAACCC
66 AGAATGCGCAAACCGAGGATAGACCCGATCCCCCCTACGTGCTACCAATCCTACTACCGTAACCC
*
20631114 TCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGATTGGGG
131 TCGATCCGATCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGATTGGGG
* * * * * *
20631167 ATGAACTCCGTATGCTTAAGTCAACCCATGAAACGAGCATGCGGGCGA-TCA-GCAGATCGGAGA
1 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGAGGGC-ACTCAGGCACA--AGAGA
* * * * * ** *
20631230 GGCAGAATGTGCAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTACTACCGTAA
63 GGCAGAATGCGCAAACCGAGGATAGACCCGATCCCCCCTACGTGCTACCAATCCTACTACCGTAA
* *
20631295 CCCTTGATCC-AGTCTGATCTTAGACTGTGAATGAACTCT
128 CCCTCGATCCGA-TCTGATCTTAGACTGGGAATGAACTCT
20631334 TTATACATAA
Statistics
Matches: 139, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
182 4 0.03
183 44 0.32
184 91 0.65
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.21
Consensus pattern (183 bp):
ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGAGGGCACTCAGGCACAAGAGAGGC
AGAATGCGCAAACCGAGGATAGACCCGATCCCCCCTACGTGCTACCAATCCTACTACCGTAACCC
TCGATCCGATCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGATTGGGG
Found at i:20631656 original size:158 final size:157
Alignment explanation
Indices: 20631155--20631656 Score: 440
Period size: 158 Copynumber: 3.2 Consensus size: 157
20631145 ACTCTATATG
* * * * * * *
20631155 CTTAGATTGGGGATGAACTCCGTATGCTTAAGTCAACCCATGAAACGAGCATGCGGGCGATCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* * * * *
20631220 AGATCGGAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCT
66 -GACCAGAGAGGCAGAATGTGCAAGCCGGGGATCAGCTCGGTCCCCCCTACGTGCTGTCGATCCT
* ** * *
20631285 ACTACCGTAACCCTT-GATCCAGTCTGAT
130 GCTACCACAA-CCTTCGATCCGGTCTGAC
* * * * * * *
20631313 CTTAGACTGTGAATGAAC-TCTTTATACATAAGTCAACCCACGAAATGAGCGTGCAGGTGCTGAG
1 CTTAGACTGGGAATGAACTTC-GTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * * * *
20631377 CCAACCAAAAAGGCATAATGTGCAAGCCGGGGATCAG-TCCAGTCCCTCTCTACGTGCTGCCGAT
65 -CGACCAGAGAGGCAGAATGTGCAAGCCGGGGATCAGCT-CGGTCCC-CCCTACGTGCTGTCGAT
* * * * **
20631441 CCCGCTACCACAACCCTCGTTTCGG-CTGGGG
127 CCTGCTACCACAACCTTCGATCCGGTCT-GAC
* * * * * *
20631472 CTTAGACAT-GGAATGAACTTCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTCCG
1 CTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* *
20631536 TCGACCAGAGAGGCAGAATGCT-CAAGCCGGGGATCAGCTCGGTCCCCCCTGCGTGCTGTTGATC
65 -CGACCAGAGAGGCAGAATG-TGCAAGCCGGGGATCAGCTCGGTCCCCCCTACGTGCTGTCGATC
* * *
20631600 CTGCTGCCACAATCTTCGGTCCGGTCTGAC
128 CTGCTACCACAACCTTCGATCCGGTCTGAC
20631630 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTTCGTATGC
20631657 TTAGACTAGG
Statistics
Matches: 265, Mismatches: 67, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
157 2 0.01
158 143 0.54
159 115 0.43
160 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.22
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
GACCAGAGAGGCAGAATGTGCAAGCCGGGGATCAGCTCGGTCCCCCCTACGTGCTGTCGATCCTG
CTACCACAACCTTCGATCCGGTCTGAC
Found at i:20631681 original size:26 final size:26
Alignment explanation
Indices: 20631630--20631682 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20631620 CCGGTCTGAC
* *
20631630 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20631656 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
20631682 C
1 C
20631683 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20634398 original size:158 final size:155
Alignment explanation
Indices: 20633893--20634398 Score: 418
Period size: 159 Copynumber: 3.2 Consensus size: 155
20633883 ACTCCGTATG
* ** * * * * *
20633893 CTTAGACGTCGAATGAACTCTGTGTGCCTAAGCCAACCCATGAAACGAGCATGCGTGCAGGCGCT
1 CTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGC---C-TACGGGAGCT
* * * * * * * *
20633958 CAACCAATCGAAGAGCCAGAATGCGCAAGCCAAAGATCGACTCGGTCCCCCCTGCGTGTTGTCGA
61 CAGCCAACCGAAGAGGCAAAATGCGCAAGCC-AGGATCGACCCGGT-CCCCCTGCGTGCTGCCGA
* * *
20634023 TCCTGCTACCACAACCCTCAATCCGGTCTGAT
124 TCCTGCTGCCACAACCCTCGATCCGGTTTGAT
* * * * * * *
20634055 CTTAGACTAAGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGC
1 CTTAGACT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCCTACGGGAGCTCAGC
* * * * ** * *
20634120 CAACCGAGGAGGCATAATGTGCAGGCCAGGGATCGACCCAATCCCTCTCTGCGTGCTACCGGTCC
65 CAACCGAAGAGGCAAAATGCGCAAGCCA-GGATCGACCCGGTCCC-C-CTGCGTGCTGCCGATCC
* * * **
20634185 TGCTGCCACAACCCTCGGTCCGGCTGGGG
127 TGCTGCCACAACCCTCGATCCGGTTTGAT
* * *
20634214 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCCTACGGGAGCTCAGT
1 CTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCCTACGGGAGCTCAGC
** * *
20634279 CGGCCGAAGAGGTAAAATGCGCAAGCCGAGGATCGACCCGGTACCCCCTGCGTGCTGCCAATCCT
65 CAACCGAAGAGGCAAAATGCGCAAGCC-AGGATCGACCCGGT-CCCCCTGCGTGCTGCCGATCCT
* * **
20634344 ACCGCCGTAACCCTCGATCCGGTTTGAT
128 GCTGCCACAACCCTCGATCCGGTTTGAT
*
20634372 CTTAGACTGGGAATGAACTTCATATGC
1 CTTAGACT-GGAATGAACTCCATATGC
20634399 TTAGATTGGG
Statistics
Matches: 271, Mismatches: 65, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
157 5 0.02
158 98 0.36
159 119 0.44
160 5 0.02
161 1 0.00
162 43 0.16
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (155 bp):
CTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCCTACGGGAGCTCAGCC
AACCGAAGAGGCAAAATGCGCAAGCCAGGATCGACCCGGTCCCCCTGCGTGCTGCCGATCCTGCT
GCCACAACCCTCGATCCGGTTTGAT
Found at i:20635129 original size:26 final size:26
Alignment explanation
Indices: 20635091--20635143 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20635081 GGCTCAAAAT
20635091 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20635117 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
20635143 C
1 C
20635144 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20637446 original size:26 final size:26
Alignment explanation
Indices: 20637404--20637456 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20637394 CCGGTCTGAT
* *
20637404 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
20637430 CTTAGACAT-GGATTGAAATCCGTATG
1 CTTAGAC-TGGGAATGAAATCCGTATG
20637456 C
1 C
20637457 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:20637588 original size:184 final size:183
Alignment explanation
Indices: 20637372--20637710 Score: 466
Period size: 184 Copynumber: 1.8 Consensus size: 183
20637362 CTACTACTGG
* * *
20637372 TCCTGCTATCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC
1 TCCTGCTATCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAGAC
* * * ** **
20637437 AT-GGATTGAAATCCGTATGCCTAAGCCAACCCATGAAACAAGTGTGCAGG-CGCTCAGTTGGTC
66 -TGGGA-TGAAATCCATATGCCTAAGCCAACCCACGAAACAAGCGTGC-GGACGCTCAGCCGACC
*
20637500 AGAGAGGCAGAATGCGTAAGCCGGGGACCGATCCGGTCCCCCCTACGTGCCGTCGA
128 AGAGAGGCAGAACGCGTAAGCCGGGGACCGATCCGGTCCCCCCTACGTGCCGTCGA
**
20637556 TCCTGCTATCGCAATGCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAGAC
1 TCCTGCTATCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAGAC
* * * *
20637621 TGGGGATGAACTCCATATGCTTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGCCGACCAG
66 T-GGGATGAAATCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGACGCTCAGCCGACCAG
*
20637686 AGAGGCAGGACGCGTAAGCCGGGGA
130 AGAGGCAGAACGCGTAAGCCGGGGA
20637711 TCGAACGGGT
Statistics
Matches: 134, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
183 3 0.02
184 128 0.96
185 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.20
Consensus pattern (183 bp):
TCCTGCTATCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAGAC
TGGGATGAAATCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGACGCTCAGCCGACCAGA
GAGGCAGAACGCGTAAGCCGGGGACCGATCCGGTCCCCCCTACGTGCCGTCGA
Found at i:20637619 original size:26 final size:26
Alignment explanation
Indices: 20637590--20637640 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20637580 GATCTGATCT
*
20637590 TAGACTGGGAATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTCCATATGCA
*
20637616 TAGACTGGGGATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
20637641 TTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCA
Found at i:20638515 original size:26 final size:26
Alignment explanation
Indices: 20638486--20638538 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20638476 CTAGTTCGAT
20638486 CTTAGAATGGAAATGAACTCTATATG
1 CTTAGAATGGAAATGAACTCTATATG
* ** *
20638512 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGAATGGAAATGAACTCTATATG
20638538 C
1 C
20638539 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGAAATGAACTCTATATG
Found at i:20639022 original size:197 final size:197
Alignment explanation
Indices: 20638669--20639198 Score: 667
Period size: 197 Copynumber: 2.7 Consensus size: 197
20638659 TCTAACTGGG
* *
20638669 GCTTAGACATGGAATGAACTCCGTATGCCTTAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * * *
20638734 TCGG-CGGAGAGGTAAAATGCGTAAGTCGGGGA-TAGGCCCGATCCCCTCCTACGTAC-GATCGA
66 TCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGACCA-GCCCGATCCCCTCCTGCGTGCTG-TCGA
* * * *
20638796 TCCTGCTACTGGTCCTGCTGTCGCAACCCTCAGTCCGG-TCTGATCTTAGACTGGGAATGAACTC
129 TCCTGCTACTAGTCCTGCTGCCACAACCCTCAATCCGGTTC-GATCTTAGACTGGGAATGAACTC
20638860 CGTAT
193 CGTAT
** * * * *
20638865 GCTTAGACATGGAATGAACTTTGTATACCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* *
20638930 TCGGCCAGAGAGGCAGAATGCGTAAGCCGAGGACCAGCCCGATCCCCCCCTGCGTGCTGTCGATC
66 TCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGACCAGCCCGATCCCCTCCTGCGTGCTGTCGATC
* *
20638995 TTGCTACTAGTCTTGCTGCCACAACCCTCAATCCGGTTCGATCTTAGACTGGGAATGAACTCCGT
131 CTGCTACTAGTCCTGCTGCCACAACCCTCAATCCGGTTCGATCTTAGACTGGGAATGAACTCCGT
20639060 AT
196 AT
* * * * * *
20639062 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGTGTGTGGGCACTTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * ** *
20639127 TCGACCGGAAAGGCAGAATGCACAAGCCGAGGACC-GACCC-AGTCCCCTCCTGTGTGCTGTCGA
66 TCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGACCAG-CCCGA-TCCCCTCCTGCGTGCTGTCGA
20639190 TCCTGCTAC
129 TCCTGCTAC
20639199 CAAAACTCTC
Statistics
Matches: 285, Mismatches: 43, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
196 63 0.22
197 218 0.76
198 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (197 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
TCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGACCAGCCCGATCCCCTCCTGCGTGCTGTCGATC
CTGCTACTAGTCCTGCTGCCACAACCCTCAATCCGGTTCGATCTTAGACTGGGAATGAACTCCGT
AT
Found at i:20639066 original size:26 final size:26
Alignment explanation
Indices: 20639037--20639089 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20639027 CCGGTTCGAT
*
20639037 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
20639063 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
20639089 C
1 C
20639090 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:20640630 original size:26 final size:26
Alignment explanation
Indices: 20640579--20640631 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20640569 CCGGTCTGAT
*
20640579 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20640605 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCATATG
20640631 C
1 C
20640632 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20642149 original size:184 final size:184
Alignment explanation
Indices: 20641802--20642171 Score: 452
Period size: 184 Copynumber: 2.0 Consensus size: 184
20641792 TTCGACTGGG
* * * *
20641802 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCACTCAA
* * * * * * * * * *
20641867 TCGGTCGGAGAGGCAAAATGCAAAAGTCCGGGATCGGCTCGGTCCCCCTTGCGTGCTGTCGATTC
66 CCGGTCGAAGAGGCAAAATGCAAAAGTCCGGGACCGACCCGATCCCCCCTACGTGCTATCGATCC
* *
20641932 TACTGCAGCAACCCTTGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATAT
131 TACTACAGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATAT
* ** * * * *
20641986 GCTTAGATATGGAATGAACTCTGTATGCCTAAGCCAATCCATAAAATGAGCGTGCAGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCACTCAA
* *
20642051 CCGGTCGAAGAGGCAAAATGCACAAGTCGGGGACCGACCCGATCCCCCCTACGTGCTATCGATCC
66 CCGGTCGAAGAGGCAAAATGCAAAAGTCCGGGACCGACCCGATCCCCCCTACGTGCTATCGATCC
* * * * * * *
20642116 TGCTATAGTAACCCTCGGTTCGATTCGATCTTAGATTGGGAATGAACTCCATAT
131 TACTACAGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATAT
20642170 GC
1 GC
20642172 CTAAGTCAAC
Statistics
Matches: 154, Mismatches: 32, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
184 154 1.00
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCACTCAA
CCGGTCGAAGAGGCAAAATGCAAAAGTCCGGGACCGACCCGATCCCCCCTACGTGCTATCGATCC
TACTACAGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATAT
Found at i:20642250 original size:158 final size:157
Alignment explanation
Indices: 20641987--20642487 Score: 468
Period size: 158 Copynumber: 3.2 Consensus size: 157
20641977 ACTCCATATG
** * * * * *
20641987 CTTAGATATGGAATGAACTCTGTATGCCTAAGCCAATCCATAAAATGAGCGTGCAGGCACTCAAC
1 CTTAGAT-TGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTGCAGGCGCTCAGC
* * *
20642052 CGGTCGAAGAGGCAAAATGCACAAGTCGGGGACCGACCCGATCCCCCCTACGTGCTATCGATCCT
65 CGGTCGAAGAGGCAAAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCT
* *
20642117 GCTAT-AGTAACCCTCGGTTCGATTCGAT
130 GCTGTCA-CAACCCTCGGTTCGATTCGAT
* **
20642145 CTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTGCTGGCGCGGAGC
1 CTTAGATT-GGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTGCAGGCGCTCAGC
* * * * * *
20642210 CGGTCGAAGAGGCATAATACGCAAGTCAGGGATCGGCCCGATCCCCCTCTACATGCTGCCGATCC
65 CGGTCGAAGAGGCAAAATGCGCAAGTCGGGGATCGACCCGATCCCCC-CTACGTGCTGTCGATCC
* * * * * * **
20642275 AGTTGTCACAACCCTCGATCCGACTGGGG
129 TGCTGTCACAACCCTCGGTTCGATTCGAT
* * * * * *
20642304 CTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAAT-AGGTGTGCGGGTGCTCAG
1 CTTAGA-TTGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGA-GCGTGCAGGCGCTCAG
* * * * * * * * * *
20642368 TCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACACGGTCCCCCTTGCGTTCTGTCGATCC
64 CCGGTCGAAGAGGCAAAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
* * * *
20642433 TGCTGTCACAACCCTC-GATCTGGTCCAAT
129 TGCTGTCACAACCCTCGGTTC-GATTCGAT
20642462 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGATT-GGAATGAACTCCATATG
20642488 TTTATACCGG
Statistics
Matches: 270, Mismatches: 66, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.01
158 144 0.53
159 121 0.45
160 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (157 bp):
CTTAGATTGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTGCAGGCGCTCAGCC
GGTCGAAGAGGCAAAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTG
CTGTCACAACCCTCGGTTCGATTCGAT
Found at i:20643629 original size:26 final size:26
Alignment explanation
Indices: 20643600--20643652 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20643590 CCGGTCTGAT
20643600 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
20643626 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
20643652 C
1 C
20643653 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20645029 original size:26 final size:26
Alignment explanation
Indices: 20644992--20645041 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
20644982 GCTCAAACTT
20644992 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
20645018 TTAGACAT-GGAATGAACTCCGTAT
1 TTAGAC-TGGGAATGAACTCCGTAT
20645042 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:20646132 original size:26 final size:26
Alignment explanation
Indices: 20646091--20646142 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20646081 CCGGACCGAT
*
20646091 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20646117 CTTAGACTGGTG-ATGAACTCCGTATG
1 CTTAGACTGG-GAATGAACTCCGTATG
20646143 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20646717 original size:158 final size:159
Alignment explanation
Indices: 20646314--20646811 Score: 507
Period size: 157 Copynumber: 3.2 Consensus size: 159
20646304 CTTCGTATGT
* * *
20646314 TTAGACATGTAATGAACTCCATATGCCTAAGGCAACCCACGAAACGAGCGTGCA-GGCGCTCAAC
1 TTAGACATGGAATGAACTCCATATGCCTAAGGCAACCCATGAAACGAGCGTG-AGGGCGCTCAGC
* * * *
20646378 CGGTCAGAGAGGTAGAATGCGCAAGTCGGGGA-CTGGCCCGGTCCCCCT-TGTGTGCTATCGATC
65 CGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATC-GGACCGGTCCCCCTCTGTGTGCTGTCGATC
* * * *
20646441 TTGCTACCACAACCCTTGGTCCGGTCCAATC
129 CTGCTGCCACAACCCTCGGTCCGGTCCAAGC
* * * *
20646472 TTAGAC-TGGGAATGAACT-CATATGCCTAAGTCAACCCATTAAACGAGCGTGCGGGCGCTAAGC
1 TTAGACAT-GGAATGAACTCCATATGCCTAAGGCAACCCATGAAACGAGCGTGAGGGCGCTCAGC
* * * * *
20646535 CGGCCGGAGAGGCATAATACGCAAGTCGAGGATCGG-CCGGTCCCCCTCTGTGTGCTGTCGGTCC
65 CGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGACCGGTCCCCCTCTGTGTGCTGTCGATCC
* * ***
20646599 CGCTGCCACAACCCTCGGTCTGG-CTGGGGC
130 TGCTGCCACAACCCTCGGTCCGGTC-CAAGC
* * *
20646629 TTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCATGAAACGGGCGTGAGGGCTCTCAGCC
1 TTAGACATGGAATGAACTCCATATGCCTAAGGCAACCCATGAAACGAGCGTGAGGGCGCTCAGCC
* *
20646694 GGTCGGAGCGGCAGAATGCGCAAG-CTGGGGATCGGACTGGTCCCCCTAC---GTGCTGTCGATC
66 GGTCGGAGAGGCAGAATGCGCAAGTC-GGGGATCGGACCGGTCCCCCT-CTGTGTGCTGTCGATC
* * * * * *
20646755 CTGCTGCCGCAACCCTTGGTTCGATCCGATC
129 CTGCTGCCACAACCCTCGGTCCGGTCCAAGC
* *
20646786 TTAGAC-TGGGAATGAAATCCGTATGC
1 TTAGACAT-GGAATGAACTCCATATGC
20646812 TTAGACTAGG
Statistics
Matches: 279, Mismatches: 49, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
156 13 0.05
157 170 0.61
158 85 0.30
159 10 0.04
160 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (159 bp):
TTAGACATGGAATGAACTCCATATGCCTAAGGCAACCCATGAAACGAGCGTGAGGGCGCTCAGCC
GGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGACCGGTCCCCCTCTGTGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGGTCCAAGC
Found at i:20646815 original size:26 final size:24
Alignment explanation
Indices: 20646778--20646827 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
20646768 CCTTGGTTCG
20646778 ATCCGATCTTAGACT-GGGAATGAA
1 ATCCGATCTTAGACTAGGG-ATGAA
20646802 ATCCGTATGCTTAGACTAGGGATGAA
1 ATCCG-AT-CTTAGACTAGGGATGAA
20646828 CTCTATATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 5 0.22
25 2 0.09
26 13 0.57
27 3 0.13
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (24 bp):
ATCCGATCTTAGACTAGGGATGAA
Found at i:20646836 original size:26 final size:26
Alignment explanation
Indices: 20646785--20646837 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20646775 TCGATCCGAT
*
20646785 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
* *
20646811 CTTAGACTAGGG-ATGAACTCTATATG
1 CTTAGACT-GGGAATGAAATCCATATG
20646837 C
1 C
20646838 CAAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:20648640 original size:354 final size:354
Alignment explanation
Indices: 20648165--20648995 Score: 931
Period size: 354 Copynumber: 2.3 Consensus size: 354
20648155 CTGACTGGGG
* * ** *
20648165 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-CTGTGTAGGTGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-GTGCGGGCGCTCA
* * * *
20648228 GCCAGTCGGAGAGGTAGAATGAGCAAGCCGAGGATCGGC-C-AGTCCCCCCCTACGTGCTGCCGA
64 GCCAGCCGGAGAGGCAGAATGAGCAAGCCG-GGATCGGCTCGA-TCCCCCTCTGCGTGCTGCCGA
* ** *
20648291 TCCTACTGCTGGTCCTGCTGTCGCAA-CCTCGATCCAGTTTGATCTTAGACTAGGAATGAACACC
127 TCCTACTGCTGGTCCTGCTGCCGCAACCCTCGATCCAGTCCGATCCTAGACTAGGAATGAACACC
* * * * * *
20648355 GTATGCTTAGACATGGAATAAACTCTGTATGCCTAAGCCAACCCATGCAACGAGCGTGCGGGTGC
192 ATATGCTTAGACAAGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGC
** * * * * *
20648420 TCAACC-GGTCGAAAAGGCAGAATGTGTAAGCCGGGGACTGGCCCCATCCCCCCCGGCGTGCTGT
257 TCAACCAACT-GAAAAGACAGAATGCGCAAGCCAGGGACTGGCCCCAT-CCCCCCGGCATGCTGT
** *** * * * *
20648484 TGATCCTGTTG-CAGCAACCCTCAGTCCGGTCTGAT
320 CAATCCTACAGTC-CCAACCCACAGTCCGATCCGAT
* * *
20648519 CTTAGACTGGGAATGAACTCCATATGACTAAGTCATCCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
20648584 CAACCGGAGAGCCAGAATGTGCAAGCCGGTGATCGGCTCGAT-CCCCTCTGCGTGCTGTCGATCC
66 CAGCCGGAGAGGCAGAATGAGCAAGCCGG-GATCGGCTCGATCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
20648648 TGCTGTTGGTCTTGCTGCCGCAACCCTCGGTCCGGTCCGATCCTAGACTAGGATTGAACTCCATA
130 TACTGCTGGTCCTGCTGCCGCAACCCTCGATCCAGTCCGATCCTAGACTAGGAATGAACACCATA
*
20648713 TGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCA
195 TGCTTAGACAAGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCA
* * *
20648778 GCCAACTGGAAAGACAGAATGCGCAAGCCAGGGACTGGCCCCATCCCCCCTGCATGCTGTCAATC
260 ACCAACTGAAAAGACAGAATGCGCAAGCCAGGGACTGGCCCCATCCCCCCGGCATGCTGTCAATC
*
20648843 CTACAGTCCCAACCCACAGTCTGATCCGAT
325 CTACAGTCCCAACCCACAGTCCGATCCGAT
* * * * * * *
20648873 CTTAGACTGGGAATTAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGCGTTGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
20648938 CGGCCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCTCTGCGTGCTG
66 CAGCCGGAGAGGCAGAATGAGCAAGC-CGGGATCGGCTCGATCCCCCTCTGCGTGCTG
20648996 TTGGTCCCGT
Statistics
Matches: 396, Mismatches: 71, Indels: 19
0.81 0.15 0.04
Matches are distributed among these distances:
353 2 0.01
354 245 0.62
355 147 0.37
356 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (354 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CAGCCGGAGAGGCAGAATGAGCAAGCCGGGATCGGCTCGATCCCCCTCTGCGTGCTGCCGATCCT
ACTGCTGGTCCTGCTGCCGCAACCCTCGATCCAGTCCGATCCTAGACTAGGAATGAACACCATAT
GCTTAGACAAGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAA
CCAACTGAAAAGACAGAATGCGCAAGCCAGGGACTGGCCCCATCCCCCCGGCATGCTGTCAATCC
TACAGTCCCAACCCACAGTCCGATCCGAT
Found at i:20648731 original size:26 final size:26
Alignment explanation
Indices: 20648691--20648741 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20648681 GGTCCGATCC
* *
20648691 TAGACTAGGATTGAACTCCATATGCT
1 TAGACAAGGAATGAACTCCATATGCT
*
20648717 TAGACAAGGAATGAACTCCGTATGC
1 TAGACAAGGAATGAACTCCATATGC
20648742 CTAAGCCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (26 bp):
TAGACAAGGAATGAACTCCATATGCT
Found at i:20649241 original size:26 final size:26
Alignment explanation
Indices: 20649189--20649241 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20649179 CTAGTCCAAT
* *
20649189 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
20649215 CTTAGACTGGGGATGATCTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
20649241 C
1 C
20649242 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:20649922 original size:26 final size:26
Alignment explanation
Indices: 20649883--20649934 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20649873 TGGCTTAAAA
20649883 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
20649909 TCTTAGACAT-GGAATGAACTCCGTAT
1 TCTTAGAC-TGGGAATGAACTCCGTAT
20649935 GCCTAAGCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:20650264 original size:159 final size:158
Alignment explanation
Indices: 20649912--20650272 Score: 364
Period size: 158 Copynumber: 2.3 Consensus size: 158
20649902 TCCGTATTCT
* * * ** *
20649912 TAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGTGTGCAGGCACTCAGCCG
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGACCGTACAGGCACTCAGCCG
* * * * * * *
20649977 GCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCCTACGTGCTGTCGATCCTGC
66 GCCAAAGAGGCAGAATGCGCAAGCTAGGGATCGACCCGATCCCCCCTACGTGCTGCCAATCCTGC
*** * * * * *
20650042 TAATGTAACCCTCAGTTTGGTTTGATCT
131 TAACACAACCCTCAGTTCGGCTGGAGCG
* * * * * * ** *
20650070 TAGAC-TGAGAATGAACTACATATGCATAAGTCAACCAATGAAATGACCGTACGGGTGCTGAGCC
1 TAGACATG-GAATGAACTCCATATGCCTAAGCCAACCCATGAAACGACCGTACAGGCACTCAGCC
* *
20650134 GGTCAAAGAGGCATAATGCGCAAGCTAGGGATCGACCCGATCCCCCTCTACGTGCTGCCAATCCT
65 GGCCAAAGAGGCAGAATGCGCAAGCTAGGGATCGACCCGATCCCCC-CTACGTGCTGCCAATCCT
* * * *
20650199 GCTACCACAACTCTCGGTTCGGCTGGGGCG
129 GCTAACACAACCCTCAGTTCGGCTGGAGCG
*
20650229 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAAC
20650273 AGACGTTTGG
Statistics
Matches: 158, Mismatches: 42, Indels: 5
0.77 0.20 0.02
Matches are distributed among these distances:
157 2 0.01
158 85 0.54
159 69 0.44
160 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.25, T:0.20
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGACCGTACAGGCACTCAGCCG
GCCAAAGAGGCAGAATGCGCAAGCTAGGGATCGACCCGATCCCCCCTACGTGCTGCCAATCCTGC
TAACACAACCCTCAGTTCGGCTGGAGCG
Found at i:20650285 original size:159 final size:157
Alignment explanation
Indices: 20649912--20650295 Score: 376
Period size: 159 Copynumber: 2.4 Consensus size: 157
20649902 TCCGTATTCT
* * * * **
20649912 TAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGA-GTGTGCAGGCACTCAGCC
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGACGTATG--GGTGCTCAGCC
* * * * * * *
20649976 GGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCCTACGTGCTGTCGATCCTG
64 GGCCAAAGAGGCAGAATGCGCAAGCTAGGGATCGACCCGATCCCCCCTACGTGCTGCCAATCCTG
*** * * * * *
20650041 CTAATGTAACCCTCAGTTTGGTTTGATCT
129 CTAACACAACCCTCAGTTCGGCTGGAGCG
* * * * * * *
20650070 TAGAC-TGAGAATGAACTACATATGCATAAGTCAACCAATGAAATGACCGTACGGGTGCTGAGCC
1 TAGACATG-GAATGAACTCCATATGCCTAAGCCAACCCATGAAACGA-CGTATGGGTGCTCAGCC
* *
20650134 GGTCAAAGAGGCATAATGCGCAAGCTAGGGATCGACCCGATCCCCCTCTACGTGCTGCCAATCCT
64 GGCCAAAGAGGCAGAATGCGCAAGCTAGGGATCGACCCGATCCCCC-CTACGTGCTGCCAATCCT
* * * *
20650199 GCTACCACAACTCTCGGTTCGGCTGGGGCG
128 GCTAACACAACCCTCAGTTCGGCTGGAGCG
* *
20650229 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGACGTTTGGGTGCTCAGCCG
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAAC-GACGTATGGGTGCTCAGCCG
20650294 GC
65 GC
20650296 TGGACAGGCA
Statistics
Matches: 176, Mismatches: 44, Indels: 11
0.76 0.19 0.05
Matches are distributed among these distances:
157 2 0.01
158 82 0.47
159 85 0.48
160 7 0.04
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGACGTATGGGTGCTCAGCCGG
CCAAAGAGGCAGAATGCGCAAGCTAGGGATCGACCCGATCCCCCCTACGTGCTGCCAATCCTGCT
AACACAACCCTCAGTTCGGCTGGAGCG
Found at i:20650305 original size:159 final size:157
Alignment explanation
Indices: 20649912--20650346 Score: 374
Period size: 159 Copynumber: 2.8 Consensus size: 157
20649902 TCCGTATTCT
* * * * **
20649912 TAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGA-GTGTGCAGGCACTCAGCC
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGACGTATG--GGTGCTCAGCC
* * * * * * * *
20649976 GGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCCTACGTGCTGTCGATCCTG
64 GGCTAGAGAGGCAAAATGCGCAAGCTAGGGATCGACCCGATCCCCCCTACGTGCTGCCAATCCTG
*** * * * * *
20650041 CTAATGTAACCCTCAGTTTGGTTTGATCT
129 CTAACACAACCCTCAGTTCGGCTGGAGCG
* * * * * * *
20650070 TAGAC-TGAGAATGAACTACATATGCATAAGTCAACCAATGAAATGACCGTACGGGTGCTGAGCC
1 TAGACATG-GAATGAACTCCATATGCCTAAGCCAACCCATGAAACGA-CGTATGGGTGCTCAGCC
* *
20650134 GG-TCAAAGAGGCATAATGCGCAAGCTAGGGATCGACCCGATCCCCCTCTACGTGCTGCCAATCC
64 GGCT-AGAGAGGCAAAATGCGCAAGCTAGGGATCGACCCGATCCCCC-CTACGTGCTGCCAATCC
* * * *
20650198 TGCTACCACAACTCTCGGTTCGGCTGGGGCG
127 TGCTAACACAACCCTCAGTTCGGCTGGAGCG
* *
20650229 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGACGTTTGGGTGCTCAGCCG
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAAC-GACGTATGGGTGCTCAGCCG
* * * ** * * *
20650294 GCTGGACAGGCAAAATACGCAAGCCGGGGATTGGCCCG-TCCCCCCTGCGTGCT
65 GCTAGAGAGGCAAAATGCGCAAGCTAGGGATCGACCCGATCCCCCCTACGTGCT
20650347 ATTGATCCTA
Statistics
Matches: 216, Mismatches: 53, Indels: 17
0.76 0.19 0.06
Matches are distributed among these distances:
157 10 0.05
158 87 0.40
159 111 0.51
160 8 0.04
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGACGTATGGGTGCTCAGCCGG
CTAGAGAGGCAAAATGCGCAAGCTAGGGATCGACCCGATCCCCCCTACGTGCTGCCAATCCTGCT
AACACAACCCTCAGTTCGGCTGGAGCG
Found at i:20650447 original size:26 final size:26
Alignment explanation
Indices: 20650396--20650448 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20650386 CCGATCCAAT
* **
20650396 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCATATG
20650422 CTTAGACAT-GGAATAAACTCCATATG
1 CTTAGAC-TGGGAATAAACTCCATATG
20650448 C
1 C
20650449 CAAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:20650848 original size:511 final size:500
Alignment explanation
Indices: 20649881--20650927 Score: 1190
Period size: 511 Copynumber: 2.1 Consensus size: 500
20649871 CGTGGCTTAA
* * * * *
20649881 AATCTTAGACTGGGAATGAACTCCGTATTCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCATATGCCAAAGCCAA
* * * * *
20649946 CCCACGAAACGAGTGTGCAGGCACTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGG
66 CCCACGAAACGAGCGTGCAGGCACTCAACCGGCCAGAGAGCCAGAATGCGCAAGCTGAGGATCGC
** ** * * * ** *
20650011 CTCGGTCCCCCCTACGTGCTGTCGATCCTGCTAATGTAACCCTCAGTTTGGTTTGATCTTAGACT
131 CTCGGTCCCCCCTAAATGCCATCAATCCTGCTAACGCAACCCTCAGTCCGGTCTGATCTTAGACT
* ** * *
20650076 GAGAATGAACTACATATGCATAAGTCAACCAATGAAATGACCGTACGGGTGCTGAGCCGGTCAAA
196 GAGAATGAACTACATATGCATAAGTCAACCAACGAAACAACCGTACGGGCGCTGAGCCGGCCAAA
* *
20650141 GAGGCATAATGCGCAAGCTAGGGATCGACCCGATCCCCCTCTACGTGCTGCCAATCCTGCTACCA
261 GAAGCATAATGCGCAAGCTAGGGATCGACCCGATCCCCCTCTACGTGCTGCCAATCCCGCTACCA
* * ** *
20650206 CAACTCTCGGTTCGGCTGGGGCGTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
326 CAACCCTCGGTCCGGCCAGGGCGTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
** * *
20650271 ACAGACGTTTGGGTGCTCAGCCGGCTGGACAGGCAAAATACGCAAGCCGGGGATTGGCCCGTCCC
391 ACAGACGTACGGGTGCTCAGCCGGCTGGACAGGCAAAATACGCAAGCCGAGGATCGGCCCGTCCC
*
20650336 CCCTGCGTGCTATTGATCCTACTACTGGTCCTGCTATCGCAACCCTCGATCCGATCC
456 CCCTGCGTGC---TG-T-CGA-T-CT--TCCTGC--T-GCAACCCTCGATCCGATCC
*
20650393 AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATAAACTCCATATGCCAAAGCCAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCATATGCCAAAGCCAA
* * * * * * *
20650458 CCCATGAAATGAGCGTTCGGGCGCTCAACCGGCCGGAGAGCCAGAATGCGCAA-ATCGAGGATCA
66 CCCACGAAACGAGCGTGCAGGCACTCAACCGGCCAGAGAGCCAGAATGCGCAAGCT-GAGGATC-
* *
20650522 GCCT-GGTCCCCCTTAAATGCCATCAATCCTGCT-ACGCAACCCTCGGTCCGGTCTGATCTTAGA
129 GCCTCGGTCCCCCCTAAATGCCATCAATCCTGCTAACGCAACCCTCAGTCCGGTCTGATCTTAGA
* * * * * * * *
20650585 CTGGGAATGAACT-CTGTATGCCTAAGTCAACCCACGAGACAAGCGTATGGGCGTTGAGCCGGCC
194 CTGAGAATGAACTAC-ATATGCATAAGTCAACCAACGAAACAACCGTACGGGCGCTGAGCCGGCC
* * * * * * * *
20650649 GAAGAATCATAATGCGTAAG-TTGAGGATCGGCCCGGTCCCCCTCTATGTGCTGCCATTCCCGCT
258 AAAGAAGCATAATGCGCAAGCTAG-GGATCGACCCGATCCCCCTCTACGTGCTGCCAATCCCGCT
* *
20650713 ACCCCAACCCTCGGTCCGGCCAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
322 ACCACAACCCTCGGTCCGGCCAGGGCGTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * *
20650778 CGAAACAGGCGTACGGGAT-CTCAGCTGGC-GGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCC
387 CGAAACAGACGTACGGG-TGCTCAGCCGGCTGGACAGGCAAAATACGCAAGCCGAGGATCGGCCC
* ** * *
20650841 TGTCCCCCTTTTGTGCTGTCGATCTTGCTGCTGCAACCCTCGATCTGATCC
451 -GTCCCCCCTGCGTGCTGTCGATCTTCCTGCTGCAACCCTCGATCCGATCC
*
20650892 AATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
20650928 TGGGGATGAA
Statistics
Matches: 451, Mismatches: 78, Indels: 25
0.81 0.14 0.05
Matches are distributed among these distances:
499 52 0.12
500 1 0.00
502 5 0.01
504 2 0.00
505 1 0.00
506 2 0.00
507 1 0.00
508 2 0.00
510 31 0.07
511 218 0.48
512 133 0.29
513 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (500 bp):
AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCATATGCCAAAGCCAA
CCCACGAAACGAGCGTGCAGGCACTCAACCGGCCAGAGAGCCAGAATGCGCAAGCTGAGGATCGC
CTCGGTCCCCCCTAAATGCCATCAATCCTGCTAACGCAACCCTCAGTCCGGTCTGATCTTAGACT
GAGAATGAACTACATATGCATAAGTCAACCAACGAAACAACCGTACGGGCGCTGAGCCGGCCAAA
GAAGCATAATGCGCAAGCTAGGGATCGACCCGATCCCCCTCTACGTGCTGCCAATCCCGCTACCA
CAACCCTCGGTCCGGCCAGGGCGTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
ACAGACGTACGGGTGCTCAGCCGGCTGGACAGGCAAAATACGCAAGCCGAGGATCGGCCCGTCCC
CCCTGCGTGCTGTCGATCTTCCTGCTGCAACCCTCGATCCGATCC
Found at i:20650921 original size:157 final size:156
Alignment explanation
Indices: 20650422--20650921 Score: 436
Period size: 157 Copynumber: 3.2 Consensus size: 156
20650412 ACTCTGTATG
* * * * * ** *
20650422 CTTAGACATGGAATAAACTCCATATGCCAAAGCCAACCCATGAAA-TGAGCGTTCGGGCGCTCAA
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAG-GCGTACGGGATCTCAG
* * ** **
20650486 CCGGCCGGAGAGCCAGAATGCGCAAATCGAGGATCAG-CCTGGTCCCCCTTAAATGCCATCAATC
65 CCGGCCGGAGAGCCAGAATGCGCAAGTCGAGGATCGGCCCT-GTCCCCCTTATGTGCTGTCAATC
**
20650550 CTGCTACGCAACCCTCGGTCCGGTCTGAT
129 CTGCTACGCAACCCTCGGTCC-GTCCAAT
** * * * * * *
20650579 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAGACAAGCGTATGGGCGT-TGA
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGGCGTACGGG-ATCTCA
* ** * * * * * *
20650642 GCCGGCCGAAGAATCATAATGCGTAAGTTGAGGATCGGCCCGGTCCCCCTCTATGTGCTGCCATT
64 GCCGGCCGGAGAGCCAGAATGCGCAAGTCGAGGATCGGCCCTGTCCCCCT-TATGTGCTGTCAAT
* * * **
20650707 CCCGCTACCCCAACCCTCGGTCCGGCCAGGG
128 CCTGCTA-CGCAACCCTCGGTCCGTCCA-AT
*
20650738 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTACGGGATCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGGCGTACGGGATCTCAGC
* * * * *
20650803 TGG-CGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCTGTCCCCCTTTTGTGCTGTCGATCTT
66 CGGCCGGAGAGCCAGAATGCGCAAGTCGAGGATCGGCCCTGTCCCCCTTATGTGCTGTCAATCCT
* * *
20650867 GCTGCTGCAACCCTCGATCTGATCCAAT
131 GCTAC-GCAACCCTCGGTCCG-TCCAAT
20650895 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCATATGC
20650922 TTAGACTGGG
Statistics
Matches: 264, Mismatches: 67, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
156 3 0.01
157 132 0.50
158 59 0.22
159 69 0.26
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGGCGTACGGGATCTCAGC
CGGCCGGAGAGCCAGAATGCGCAAGTCGAGGATCGGCCCTGTCCCCCTTATGTGCTGTCAATCCT
GCTACGCAACCCTCGGTCCGTCCAAT
Found at i:20651656 original size:26 final size:26
Alignment explanation
Indices: 20651618--20651670 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20651608 GGCTCAAAAT
*
20651618 CTTAGACTAGGAATGAACACCGTATG
1 CTTAGACTAGGAATGAACACCGCATG
*
20651644 CTTAGAC-ATGGAATGAACTCCGCATG
1 CTTAGACTA-GGAATGAACACCGCATG
20651670 C
1 C
20651671 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.23
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCGCATG
Found at i:20651979 original size:159 final size:157
Alignment explanation
Indices: 20651647--20652086 Score: 420
Period size: 157 Copynumber: 2.8 Consensus size: 157
20651637 CCGTATGCTT
* **
20651647 AGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAATGAGCGCGCGGGCGCTCAGTCGG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGCGCGGGCGCTCAGTCGG
* * ** * * * * * *
20651712 TCGGAGAGGCAGAATGCGCAAGCTAGGGATCACCCGGTCCCCCCTGCGTGCTATCGATCCTACTG
66 CCGAAGAGGCAGAACACGCAAGCCAGGGATCACCCGATCCCCCCTACGTGCTACCAATCCCACTG
* * * * * *
20651777 CCGCAACCTTCGGTCCGGTTTGATCTT
131 CCACAACCCTCGGTCCGGCTGGAGCTG
* * * * * *
20651804 AGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGGAACAAGCGTGTGGGCGCTGAG-CT
1 AGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGCGCGGGCGCTCAGTC-
* *
20651867 GGCCGAAGAGGCATAACACGTAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTACCAATCCC
64 GGCCGAAGAGGCAGAACACGCAAGCCAGGGATCA-CCCGATCCCCC-CTACGTGCTACCAATCCC
* *
20651932 GCTGCCACAACCCTCGGTCCGGCTGGGGCTG
127 ACTGCCACAACCCTCGGTCCGGCTGGAGCTG
* * ** * *
20651963 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG-CCG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGCGCGGGCGCTCAGTCGG
* *** * * *
20652027 ACGAAGAGGCAGAATGTGCAAGCC-GGAGATCGACCCGGTCCCCCTTGCGTGCTACCAATC
66 CCGAAGAGGCAGAACACGCAAGCCAGG-GATC-ACCCGATCCCCCCTACGTGCTACCAATC
20652087 TTAGACTGGG
Statistics
Matches: 228, Mismatches: 48, Indels: 14
0.79 0.17 0.05
Matches are distributed among these distances:
156 2 0.01
157 93 0.41
158 43 0.19
159 89 0.39
160 1 0.00
ACGTcount: A:0.24, C:0.32, G:0.28, T:0.16
Consensus pattern (157 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGCGCGGGCGCTCAGTCGG
CCGAAGAGGCAGAACACGCAAGCCAGGGATCACCCGATCCCCCCTACGTGCTACCAATCCCACTG
CCACAACCCTCGGTCCGGCTGGAGCTG
Found at i:20652848 original size:26 final size:26
Alignment explanation
Indices: 20652810--20652862 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20652800 GGCTCAAAAT
*
20652810 CTTAGACTAGGAATGAACACCGTATG
1 CTTAGACTAGGAATGAACACCGCATG
*
20652836 CTTAGAC-ATGGAATGAACTCCGCATG
1 CTTAGACTA-GGAATGAACACCGCATG
20652862 C
1 C
20652863 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.23
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCGCATG
Found at i:20653205 original size:159 final size:158
Alignment explanation
Indices: 20652839--20653279 Score: 401
Period size: 158 Copynumber: 2.8 Consensus size: 158
20652829 CCGTATGCTT
* *
20652839 AGACATGGAATGAACTCCGC-ATGCCTAAGCCAACCCACGAAATGAGCGCGCGGGCGCTCAG-TC
1 AGACATGGAATGAACTCC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCT-
* ** ** * * * * *
20652902 GGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCCTA
64 GGCCGAAGAGGCAGAACACGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTACCAATCCCA
* * * * * * *
20652967 CTGTAGCAACCTTCGGTCTGGTTTGATCTT
129 CTGCAGCAACCCTCGGTCCGGCTGGAGCTG
* ** * * * * *
20652997 AGAC-TGGGAATGAACTCCATATGTATAAGTCAACCCACGGAACAAGCGTGTGGGCGCTGAGCTG
1 AGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTG
* * *
20653061 GCCGAAGAGGCATAACACGTAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTACCAATCCCG
65 GCCGAAGAGGCAGAACACGCAAGCCAGGGATCAGCCCGATCCCCC-CTACGTGCTACCAATCCCA
*
20653126 CTGCCA-CAACCCTCGGTCCGGCTGGGGCTG
129 CTG-CAGCAACCCTCGGTCCGGCTGGAGCTG
* * *
20653156 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC-CG
1 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGG
* *** * * *
20653220 ACGAAGAGGCAGAATGTGCAAGCC-GGAGATC-GACCCGGTCCCCCTTGCGTGCTACCAATC
66 CCGAAGAGGCAGAACACGCAAGCCAGG-GATCAG-CCCGATCCCCCCTACGTGCTACCAATC
20653280 TTAGACTGGG
Statistics
Matches: 224, Mismatches: 51, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
157 18 0.08
158 119 0.53
159 85 0.38
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (158 bp):
AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGG
CCGAAGAGGCAGAACACGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTACCAATCCCACT
GCAGCAACCCTCGGTCCGGCTGGAGCTG
Found at i:20654087 original size:159 final size:157
Alignment explanation
Indices: 20653684--20654150 Score: 443
Period size: 159 Copynumber: 2.9 Consensus size: 157
20653674 AACTCCGTAT
* * * *
20653684 GGTTAGACATGGAATGAACTGCGTATGCCTAAGCCAACCCATGAAACGAGCGCGCGGGCGCTCAG
1 GGTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * *
20653749 TCGATCGGAAGAGGTAGAATGTGCAAGCTGGGGATCAGCCCGATCCCCCTTACGTGCTATCGATC
66 TCGGTCGG-AGAGGCAGAATGCGCAAGTTGGGGATCAGCCC-ATCCCCCTTGCGTGCTGTCGATC
* * *
20653814 CTGCTACCACAACCCTCGATCCGATTCAA
129 CTGCTGCCACAACCCTCGGTCCGACTCAA
* * * * * *
20653843 TGTTTGA-TTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGA
1 GGTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * * * *
20653907 GCCAGCCAGAGAGGGATAATGCACAAGTTGGGGATCAGCCCAATCCCCCTCTGTGTGCTGTCGGT
65 GTCGGTCGGAGAGGCAGAATGCGCAAGTTGGGGATCAGCCC-ATCCCCCT-TGCGTGCTGTCGAT
* * **
20653972 CCCGCTGCCACAACCCTCGGTCTGACT-GG
128 CCTGCTGCCACAACCCTCGGTCCGACTCAA
* * * * * *
20654001 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGTGTACGGGCACTCA
1 GG-TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * *
20654066 GTCGGTCGGACAGGCAGAATGCGTAAGTCGGGGAACGGCCTCGTCCCCCTTGCGTGCTGTCGATC
65 GTCGGTCGGAGAGGCAGAATGCGCAAGTTGGGGATCAGCC-CATCCCCCTTGCGTGCTGTCGATC
* *
20654131 CTACTGCCGCAACCCTCGGT
129 CTGCTGCCACAACCCTCGGT
20654151 TCGGTTCGAT
Statistics
Matches: 241, Mismatches: 62, Indels: 11
0.77 0.20 0.04
Matches are distributed among these distances:
158 67 0.28
159 172 0.71
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GGTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
TCGGTCGGAGAGGCAGAATGCGCAAGTTGGGGATCAGCCCATCCCCCTTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGACTCAA
Found at i:20654975 original size:13 final size:13
Alignment explanation
Indices: 20654957--20654992 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
20654947 ACTCAACCGA
20654957 CCAGAGAGGCCAG
1 CCAGAGAGGCCAG
20654970 CCAGAGAGGCCAG
1 CCAGAGAGGCCAG
20654983 CCAGAGAGGC
1 CCAGAGAGGC
20654993 ATAATGTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.31, C:0.31, G:0.39, T:0.00
Consensus pattern (13 bp):
CCAGAGAGGCCAG
Found at i:20656306 original size:26 final size:26
Alignment explanation
Indices: 20656268--20656320 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20656258 GGCTCAAACT
*
20656268 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTATATG
20656294 CTTAGAC-ATGGAATGAACTCTATATG
1 CTTAGACTA-GGAATGAACTCTATATG
20656320 C
1 C
20656321 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTATATG
Found at i:20656774 original size:26 final size:26
Alignment explanation
Indices: 20656738--20656790 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20656728 CCGATCCGAT
20656738 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
20656764 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20656790 C
1 C
20656791 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20657278 original size:26 final size:26
Alignment explanation
Indices: 20657249--20657301 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20657239 CTGGTTCGAT
*
20657249 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20657275 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20657301 C
1 C
20657302 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20657459 original size:11 final size:11
Alignment explanation
Indices: 20657443--20657475 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
20657433 CAGTTAGGCT
*
20657443 CTCCGACGATG
1 CTCCGATGATG
20657454 CTCCGATGATG
1 CTCCGATGATG
20657465 CTCCGATGATG
1 CTCCGATGATG
20657476 GTGCCCGGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.30, G:0.27, T:0.24
Consensus pattern (11 bp):
CTCCGATGATG
Found at i:20658124 original size:26 final size:26
Alignment explanation
Indices: 20658095--20658146 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20658085 TCCGGTCTGA
*
20658095 TCTTAGAC-TGGGAATGAACTCTGTAT
1 TCTTAGACAT-GGAATGAACTCCGTAT
20658121 TCTTAGACATGGAATGAACTCCGTAT
1 TCTTAGACATGGAATGAACTCCGTAT
20658147 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTTAGACATGGAATGAACTCCGTAT
Done.