Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 195 of 402
Found at i:20658626 original size:26 final size:26
Alignment explanation
Indices: 20658590--20658642 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20658580 TCGATTCGAT
* *
20658590 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
20658616 CTTAGACTGGGGATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20658642 C
1 C
20658643 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20660228 original size:26 final size:26
Alignment explanation
Indices: 20660192--20660244 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20660182 GGCTCAAAAT
20660192 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20660218 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20660244 C
1 C
20660245 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20660945 original size:26 final size:26
Alignment explanation
Indices: 20660905--20660955 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20660895 CGATTTGATC
20660905 TTAGACTAGGAATGAACTCCATATGG
1 TTAGACTAGGAATGAACTCCATATGG
*
20660931 TTAGACTA-GAGATGAACTTCATATG
1 TTAGACTAGGA-ATGAACTCCATATG
20660956 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGG
Found at i:20661153 original size:26 final size:25
Alignment explanation
Indices: 20661114--20661165 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
20661104 TCGGTCTGAT
20661114 CTTAGACTGGAATGAACTCCATATG
1 CTTAGACTGGAATGAACTCCATATG
*
20661139 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCATATG
20661165 C
1 C
20661166 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:20661684 original size:26 final size:26
Alignment explanation
Indices: 20661633--20661685 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20661623 CCGGTCCAAT
* *
20661633 CTTAGACTGGGAATGAACTTCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20661659 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
20661685 C
1 C
20661686 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20662393 original size:25 final size:26
Alignment explanation
Indices: 20662354--20662405 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
20662344 GGCTCAAACT
20662354 CTTAGACTGGCAATGAACTCC-TATG
1 CTTAGACTGGCAATGAACTCCGTATG
20662379 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGCAATGAACTCCGTATG
20662405 C
1 C
20662406 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:20663410 original size:26 final size:26
Alignment explanation
Indices: 20663374--20663423 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20663364 CTAGTCCAAT
20663374 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
*
20663400 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
20663424 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:20664095 original size:159 final size:158
Alignment explanation
Indices: 20663794--20664366 Score: 598
Period size: 159 Copynumber: 3.6 Consensus size: 158
20663784 ACTCGAAATG
*
20663794 CTTAGACAT-GGAATGAACTGCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
20663858 CC-AGCCGGAGAGGTAGAATACGCAAGCCAGGGATC-AGCCTGATCCCTCC-ATGCGTGCTGTCA
65 CCGA-CCGGAGAGGCAGAATGCGCAAGCCAGGGATCGA-CCTGATCCC-CCTATGTGTGCTCTC-
* *
20663920 ATCCTGCTACTGCAACCCTCTGTCTGATCTGAT
126 ATCCTGCTGCTGCAACCCTCAGTCTGATCTGAT
* * * *
20663953 CTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCGACCCATGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
20664018 CGATCGGAGAGGCATAATGCACAAGCCAGGGATCGACCTGATCCCCCTTTGTGTGCTACTCGTCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGATCCCCCTATGTGTGCT-CTCATCC
* ** * * **
20664083 TACTGCCACAACCCTCGGTCCGA-CTGGGG
130 TGCTGCTGCAACCCTCAGTCTGATCT-GAT
* * *
20664112 CTTAGACAT-GG-A--AACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
20664173 TCGACCGGAGAGGCAGAATGCGCAAG-CTGAGGATCGACCCGATCCCCCCTACGTGTTGC-C-AA
65 CCGACCGGAGAGGCAGAATGCGCAAGCCAG-GGATCGACCTGAT-CCCCCTATGTG-TGCTCTCA
*
20664235 TCCTGCTGTTGCAACCCTCAGTTCT-ATCTGAT
127 TCCTGCTGCTGCAACCCTCAG-TCTGATCTGAT
* * *
20664267 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * *
20664332 CGACCAGAGA-GCAGGATGCGTAAGCCAGGGATCGA
66 CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGA
20664367 ACGGATGGTA
Statistics
Matches: 339, Mismatches: 58, Indels: 36
0.78 0.13 0.08
Matches are distributed among these distances:
154 1 0.00
155 29 0.09
156 83 0.24
157 28 0.08
158 63 0.19
159 130 0.38
160 5 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGATCCCCCTATGTGTGCTCTCATCCT
GCTGCTGCAACCCTCAGTCTGATCTGAT
Found at i:20666209 original size:26 final size:26
Alignment explanation
Indices: 20666173--20666223 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20666163 TGACTTAGGC
*
20666173 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACAGAGTTCATCCCCAGTCTAAGT
*
20666199 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
20666224 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGT
Found at i:20666581 original size:159 final size:158
Alignment explanation
Indices: 20666394--20666689 Score: 348
Period size: 158 Copynumber: 1.9 Consensus size: 158
20666384 CCAGTCAGAC
* * * * *
20666394 CGAGGGTTGTGGCAGCGGGACCGGCAGCACATAAAGGGGG-ATCGGGCTGATCCCCGA-CTTGCG
1 CGAGGGTTGCGGCAGCAGGACCGACAGCACAT--AGGGGGAATCGGGCTGATCCCC-ATCTCGCA
* * * * *
20666457 CATTATCCCTCTCTG-GCTGGCTTAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACA
63 CATTATCCCTCTCCGATC-GACTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC-
20666521 G-AGTTCATTCCCAGTCAAAGATTGAATCGGAT
126 GCAGTTCATTCCCAGTCAAAGATTGAATCGGAT
* * *
20666553 CGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGGGGAATCGGGCTGATCCCCATCTCGCACAT
1 CGAGGGTTGCGGCAGCAGGACCGACAGCACATAGGGGGAATCGGGCTGATCCCCATCTCGCACAT
* * * ** *
20666618 TCTGCCTCTCCGATCGACTGAGCGCCCGTGCGCTCATTTCATGGGTTGGCTTAGGCATACGCAGT
66 TATCCCTCTCCGATCGACTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGCAGT
20666683 TCATTCC
131 TCATTCC
20666690 ATGTCTAAGC
Statistics
Matches: 114, Mismatches: 19, Indels: 9
0.80 0.13 0.06
Matches are distributed among these distances:
157 8 0.07
158 79 0.69
159 27 0.24
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
CGAGGGTTGCGGCAGCAGGACCGACAGCACATAGGGGGAATCGGGCTGATCCCCATCTCGCACAT
TATCCCTCTCCGATCGACTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGCAGT
TCATTCCCAGTCAAAGATTGAATCGGAT
Found at i:20666724 original size:26 final size:26
Alignment explanation
Indices: 20666672--20666724 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20666662 GTTGGCTTAG
* *
20666672 GCATACGCAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTATAA
20666698 GCATACGAAGTTCATTCCCA-GTATAA
1 GCATACGAAGTTCATT-CCATGTATAA
20666724 G
1 G
20666725 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTATAA
Found at i:20667083 original size:26 final size:26
Alignment explanation
Indices: 20667053--20667105 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20667043 GTTGACTTAG
20667053 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*** *
20667079 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
20667105 G
1 G
20667106 ATTGGTAGCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:20667560 original size:26 final size:26
Alignment explanation
Indices: 20667522--20667574 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20667512 GTTGGCTTAG
*
20667522 GCATGCGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
20667548 GCATACGGTGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
20667574 G
1 G
20667575 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:20669974 original size:26 final size:26
Alignment explanation
Indices: 20669944--20669996 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20669934 GTTGGCTTAG
20669944 GCATACAGAATTCATT-CCATGTCTAA
1 GCATACAGAATTCATTCCCA-GTCTAA
** *
20669970 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
20669996 G
1 G
20669997 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:20670999 original size:159 final size:157
Alignment explanation
Indices: 20670775--20671193 Score: 423
Period size: 159 Copynumber: 2.6 Consensus size: 157
20670765 GGGGACCGTG
* * * * * *
20670775 TCGATCCCTGGCTTGCGTATTCTGCCTCTCCGACCGACTGAGCACCGGCACAC-C-TATTTCGTG
1 TCGATCCCTGGCTTGCGTATTATGCCTCTCCGACCGGCTGAGCGCCAGCACGCTCGT-TTT-ATG
* * *
20670838 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTG-TGACA
64 GGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCCCCAACCGGAGCGAGGGTTGCTG-CA
* * * *
20670902 ACTGGATCGGTAGCACGCAGAGGGGAATCGGA
128 ACAGGATCGATAGCACGAAG-GGGGAA-CCGA
* * *
20670934 TCGATCCCTGACTTGCGTATTATGCCTCTTCGACCGGCTCAGCGCCAGCACGCTCGTTTTATGGG
1 TCGATCCCTGGCTTGCGTATTATGCCTCTCCGACCGGCTGAGCGCCAGCACGCTCGTTTTATGGG
* * ** * * *
20670999 TTGACTTAGGCATATGGAGTTCATTCCCA-ATCTAAGGTCGAATCGGAGCGAGGGTTGCTGCAGC
66 TTGGCTTAGGCATACGGAGTTCATT-CCATATCTAAGCCCCAACCGGAGCGAGGGTTGCTGCAAC
*
20671063 AGGATCGATAGCACGAAGGGGGGACCGA
130 AGGATCGATAGCACGAAGGGGGAACCGA
* * * * * * * * * * *
20671091 GCTGATCCCCGGCTTGTGCATTTTGCCTCTCCGACCGGTTGAGTGCCCGTATGCTCGTTTCATGG
1 TC-GATCCCTGGCTTGCGTATTATGCCTCTCCGACCGGCTGAGCGCCAGCACGCTCGTTTTATGG
*
20671156 ATTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGC
65 GTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGC
20671194 ATATGGAGTT
Statistics
Matches: 213, Mismatches: 41, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
157 7 0.03
158 84 0.39
159 112 0.53
160 9 0.04
161 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (157 bp):
TCGATCCCTGGCTTGCGTATTATGCCTCTCCGACCGGCTGAGCGCCAGCACGCTCGTTTTATGGG
TTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCCCCAACCGGAGCGAGGGTTGCTGCAACA
GGATCGATAGCACGAAGGGGGAACCGA
Found at i:20671320 original size:184 final size:184
Alignment explanation
Indices: 20671008--20671377 Score: 519
Period size: 184 Copynumber: 2.0 Consensus size: 184
20670998 GTTGACTTAG
* * *
20671008 GCATATGGAGTTCATTCCCAATCTAAGGTCGAATCGGAGCGAGGGTTGCTGCAGCAGGATCGATA
1 GCATATGGAGTTCATTCCCAATCTAAGATCGAACCGGAGCGAGGGTTGCTGCAGCAGGATCGACA
* * * **
20671073 GCACGAAGGGGGGACCGAGCTGATCCCCGGCTTGTGCATTTTGCCTCTCCGACCGGTTGAGTGCC
66 GCACGAAGGGGGGACCGAGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGACTGAGTGCC
* *
20671138 CGTATGCTCGTTTCATGGATTGGCTTAGGCATACGGAGTTCATTCCATATCTAA
131 CGCATGCCCGTTTCATGGATTGGCTTAGGCATACGGAGTTCATTCCATATCTAA
* * * *
20671192 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCTGCAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAATCTAAGATCGAACCGGAGCGAGGGTTGCTGCAGCAGGATCGACA
* **
20671257 GCACGCAA-GGGGGACCGAGCCGATCCCTGACTT-TCGCATTCTGCCTCTCCGGTCGACTGAGTG
66 GCACG-AAGGGGGGACCGAGCCGATCCCCGACTTGT-GCATTCTGCCTCTCCGACCGACTGAGTG
* * * *
20671320 CCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
129 CCCGCATGCCCGTTTCATGGATTGGCTTAGGCATACGGAGTTCATTCCATATCTAA
20671376 GC
1 GC
20671378 CCCAGTCAGA
Statistics
Matches: 163, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
183 1 0.01
184 160 0.98
185 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (184 bp):
GCATATGGAGTTCATTCCCAATCTAAGATCGAACCGGAGCGAGGGTTGCTGCAGCAGGATCGACA
GCACGAAGGGGGGACCGAGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGACTGAGTGCC
CGCATGCCCGTTTCATGGATTGGCTTAGGCATACGGAGTTCATTCCATATCTAA
Found at i:20672255 original size:26 final size:26
Alignment explanation
Indices: 20672205--20672257 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20672195 GTTAACTTAG
*
20672205 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
20672231 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
20672257 G
1 G
20672258 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:20672576 original size:26 final size:26
Alignment explanation
Indices: 20672547--20672599 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20672537 ATTGACTTAG
*
20672547 GCATATGGAGTTCA-TCTCCAGTCTAA
1 GCATATGAAGTTCATTC-CCAGTCTAA
20672573 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
20672599 G
1 G
20672600 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGTCTAA
Found at i:20672789 original size:343 final size:342
Alignment explanation
Indices: 20672134--20672916 Score: 987
Period size: 343 Copynumber: 2.3 Consensus size: 342
20672124 CACCCGTTCA
* * * * * * * *
20672134 ATCCCCAACTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGTCCGCACGCTCGTTCCATGGGTTA
1 ATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* *
20672199 ACTTAGGCATACGGAGTTCATC-CCTAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAG
66 ACTTAGGCATATGGAGTTCATCTCC-AGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAG
* * **
20672263 ATCGAATCGAGGGTTATGACAGCAGGATCACCAGCACTCAGGGGGACCGGGTCGATCCTCGACTT
130 ACCGAATCGAGGGTTACGACAGCAGGATCACCAGCACTCAGGGGGACCACGTCGATCCTCGACTT
* * * * *
20672328 GTGCATTCTGCCTCTCCGGCCGGCTTAGTGCCTGCACGCCCATTTCATAGGTTGGCTTAGGCATA
195 GCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCCCATTTCATAGGTTGGCTTAGGCATA
* *
20672393 GGGAGTTCATTCCCTGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGAAGCGGGACCGGCAACACG
260 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGAAGCGGGACCGGCAACACG
*
20672458 TTGAAGGGGATCGGACCG
325 TAGAAGGGGATCGGACCG
* * * * * *
20672476 ATCCCTGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCATGCTCGTTTCGTGGATTG
1 ATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* *
20672541 ACTTAGGCATATGGAGTTCATCTCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGA
66 ACTTAGGCATATGGAGTTCATCTCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGA
* * * *** * *
20672606 CCGGATCGAGGGTTGCGACAGTAGGATCGGTAGCACTCAGGGGGGACCACGTCGATCTTCGGCTT
131 CCGAATCGAGGGTTACGACAGCAGGATCACCAGCACTCA-GGGGGACCACGTCGATCCTCGACTT
*** * * *
20672671 GCGCATTCTACCTCTCCGGTTTGCTGGGCGCCCGTACGCCCATTTCATGGGTTGGCTTAGGCATA
195 GCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCCCATTTCATAGGTTGGCTTAGGCATA
* * *
20672736 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGACCTGCAGCACG
260 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGAAGCGGGACCGGCAACACG
* *
20672801 TAGAGGGGGATCGGGCCG
325 TAGAAGGGGATCGGACCG
* * * * * * *
20672819 ATCCCCGACGTACGTATTCTGCCTCTTC-AGTCGGCTGAGTGCCCACACGCTCGTTTTGTGGGTT
1 ATCCCCGACTTGCGCATTCTGCCTCTCCGA-TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
20672883 GGCTTAGGCATATAGAGTTCAT-TCCCAGTCTAAG
65 GACTTAGGCATATGGAGTTCATCT-CCAGTCTAAG
20672917 ATTTTGAGCC
Statistics
Matches: 373, Mismatches: 64, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
342 142 0.38
343 231 0.62
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (342 bp):
ATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
ACTTAGGCATATGGAGTTCATCTCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGA
CCGAATCGAGGGTTACGACAGCAGGATCACCAGCACTCAGGGGGACCACGTCGATCCTCGACTTG
CGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCCCATTTCATAGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGAAGCGGGACCGGCAACACGT
AGAAGGGGATCGGACCG
Found at i:20674318 original size:197 final size:198
Alignment explanation
Indices: 20674013--20674505 Score: 624
Period size: 197 Copynumber: 2.5 Consensus size: 198
20674003 GGACTGGGTC
* * * * *
20674013 GGTCCTCGGCTTATGCATTCTGCCT-TTCCGGCCGATTAAGTGCCCACACACTCGTTTCATGGGT
1 GGTCCTCGGCTTACGCATTCTGCCTCTT-CGGCCGATTGAGTGCCCGCACGCTCGTTTCGTGGGT
*
20674077 TGGCTTAGGCATACGGAGTTCATTCCATGTCTTAGCATACGGAGTTCATTCCCAGTCTAAGATC-
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * *
20674141 GAACCAAATCGAGGGTTGCGGCAGTAAGACTAGTAGCAAGATC-GACAGCACGCAGTG-GGGGAT
130 G-ACCAAACCGAGGGTTGCGACAGCAAGACCAGTAGCAAGATCGGACA-CACGCAG-GACGGGAT
20674204 CGAG-CT
192 CGAGCCT
* * * *
20674210 GGTCCTCGGCTTGCGCATTCTGCCTCTTTGGCCGACTGAGTGCCCGCATGCTCGTTTCGTGGGTT
1 GGTCCTCGGCTTACGCATTCTGCCTCTTCGGCCGATTGAGTGCCCGCACGCTCGTTTCGTGGGTT
*
20674275 GGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * * *
20674340 ACCAGACCGAGGGTTGCGACAGCAGGACCAGTAGCAGGATCGGTCATACGTAGGACGGGATTGGG
131 ACCAAACCGAGGGTTGCGACAGCAAGACCAGTAGCAAGATCGGACACACGCAGGACGGGATCGAG
20674405 CCT
196 CCT
* * ** *
20674408 -ATCC-CTGACTTACGCATTCTGCCTC-TCCACCGATTGAGCGCCCGCACGCTCGTTTCGTGGGT
1 GGTCCTC-GGCTTACGCATTCTGCCTCTTCGGCCGATTGAGTGCCCGCACGCTCGTTTCGTGGGT
20674470 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
20674506 CCCAGTCAGA
Statistics
Matches: 256, Mismatches: 34, Indels: 13
0.84 0.11 0.04
Matches are distributed among these distances:
196 68 0.27
197 180 0.70
198 8 0.03
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.26
Consensus pattern (198 bp):
GGTCCTCGGCTTACGCATTCTGCCTCTTCGGCCGATTGAGTGCCCGCACGCTCGTTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCAAACCGAGGGTTGCGACAGCAAGACCAGTAGCAAGATCGGACACACGCAGGACGGGATCGAG
CCT
Found at i:20674320 original size:26 final size:26
Alignment explanation
Indices: 20674284--20674334 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20674274 TGGCTTAGGT
20674284 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
20674310 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
20674335 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:20675571 original size:26 final size:26
Alignment explanation
Indices: 20675535--20675585 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20675525 GTTGACTTAA
* *
20675535 GCATATGGAGTTCATCCCCAGTCTAT
1 GCATACGGAGTTCATCCCCAATCTAT
*
20675561 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATCCCCAATCTA
20675586 AGATCAGATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAT
Found at i:20675758 original size:26 final size:26
Alignment explanation
Indices: 20675719--20675771 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20675709 GTTGGCTTAG
* *
20675719 GCATACGGATTTCAAT-CCATGTCTAA
1 GCATACAGAGTTCAATCCCA-GTCTAA
*
20675745 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
20675771 G
1 G
20675772 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:20676283 original size:26 final size:26
Alignment explanation
Indices: 20676247--20676297 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20676237 TAGCTTAGGA
*
20676247 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
20676273 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
20676298 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:20679535 original size:159 final size:158
Alignment explanation
Indices: 20679152--20679542 Score: 405
Period size: 159 Copynumber: 2.5 Consensus size: 158
20679142 AATCTAAGCC
* * *
20679152 TATGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCGGCAGGATTGGCAGCA
1 TATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGGCAGCA
** * * * * **
20679217 CGCA-AGGGGTACCGGGCCGATCCTCGGCCTGTGCATTTTGCCTCTTCGGTGACTGAGCGCCCGT
66 CGCAGAGGGGTACCGGGCCGATCCTCGGCCTGCACATTATGCCTCCTCGGTGACTCAGCACCCCC
* * *
20679281 AGGCCCGTTTCGTGGGTTGGCTTAGGCA
131 ACGCCCGTTTCATGGGTTGACTTAGGCA
* * * * * * * *
20679309 TAGGGAGTTCATT-CCATGTCTAAGCCTCAG-CCGGACCAAGGGTTGTGGCTGTAGGACCGGTAG
1 TATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGGCAG
* * *
20679372 CACGCAGAGAGGG-ATCGGGTCGATCC-CTGGCCTGCACATTATGCCTCCTCGGTTGGCTCAGCA
64 CACGCAGAG-GGGTACCGGGCCGATCCTC-GGCCTGCACATTATGCCTCCTCGG-TGACTCAGCA
*
20679435 CCCCCACGCTCGTTTCATGGGTTGACTTAGGCA
126 CCCCCACGCCCGTTTCATGGGTTGACTTAGGCA
* ** * * *
20679468 TATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTACGACAGCAGGATCGACAACA
1 TATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGGCAGCA
*
20679533 CGCAGGGGGG
66 CGCAGAGGGG
20679543 GACAGAGCCG
Statistics
Matches: 186, Mismatches: 40, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
156 3 0.02
157 51 0.27
158 44 0.24
159 85 0.46
160 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (158 bp):
TATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGGCAGCA
CGCAGAGGGGTACCGGGCCGATCCTCGGCCTGCACATTATGCCTCCTCGGTGACTCAGCACCCCC
ACGCCCGTTTCATGGGTTGACTTAGGCA
Found at i:20680375 original size:26 final size:26
Alignment explanation
Indices: 20680326--20680378 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20680316 GTTGGCTTAG
*
20680326 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
20680352 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
20680378 G
1 G
20680379 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:20682964 original size:26 final size:26
Alignment explanation
Indices: 20682928--20682978 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20682918 TGGCTTAGGG
20682928 ATACAGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
*
20682954 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
20682979 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:20683019 original size:12 final size:12
Alignment explanation
Indices: 20683002--20683031 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
20682992 TAGGGTTGTG
20683002 GCAGCAGGATCA
1 GCAGCAGGATCA
20683014 GCAGCAGGATCA
1 GCAGCAGGATCA
*
20683026 ACAGCA
1 GCAGCA
20683032 CGGAGGGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.37, C:0.27, G:0.30, T:0.07
Consensus pattern (12 bp):
GCAGCAGGATCA
Found at i:20683071 original size:500 final size:496
Alignment explanation
Indices: 20681826--20683175 Score: 1356
Period size: 500 Copynumber: 2.7 Consensus size: 496
20681816 GCAGCAAGAC
* * * * *
20681826 CGGTAGCAGGATCGACAGGATGCAGAGGA-GGACCGGGCTGATCTCTGGCTTGCACATTATGCCT
1 CGGTAGCAGGATCGACAGCA--CATAGGAGGGATCGGGCTGATC-CCGGCTTGCACATTCTGCCT
* * * * **
20681890 CTCCAGCCAGCTGAGCGCCTGCACGCTCATTTAATGGGTTGACTTAGGCATATGGAGTTCA-TCC
63 CTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCC
* * * * * *
20681954 CTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGGTCAGACCGGACCGAGGATTGTGGCAGCA
128 AT-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGC-
* *
20682019 AGATCGA-CA-G--CAC-G--C-AGGGGGGACCGGGCTGATCCCCGGCTTG-AGCATTCTGCCTC
191 AGATCGAGCAGGATCACAGCACGAGGGGGGACCGGG-TCATCCTC-GCTTGCA-CATTCTGCCTC
* ** * *
20682075 TCTGGTCGGCTGAGCGCTCGTATACCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
253 TCTCGT-GGCTGAGCGC-CCCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
* * * *
20682140 TGTCTAAGCCCCAGCCGAAACGAGGGTTGTGGTAGCGAGACTGGCAGCACGCAGAGAGGGACTAG
316 TGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACGAGACTGGCAGCACGCAGAGAGGGACTAG
* * * * * * * * * * *
20682205 ACTGATCCCTGGCTTGCACATTATGCCTTTTTGGTTGGCTCAGCACCTGCATGCTCATTTCGTGG
381 ACTGATCCCCGGCTTACACATTATGCCTCTTCGATCGACTCAACACCCGCACGCTCATTTCATGG
* **
20682270 GTTGACTTATGCATACAGAGTTCATTCACAGTCTAAGATCAGACTGGATCAAGGGTTG
446 G-TGA-TTATG-----AGAGTCCATTCACAGTCTAAGATCAGACCAGATCAAGGGTTG
* * *
20682328 CGATAGCAGGATCGACAGCACGTAGGGGGGATCGGG-TCGATCCCTGGCTTGCACATTCTGCCTC
1 CGGTAGCAGGATCGACAGCACATAGGAGGGATCGGGCT-GATCCC-GGCTTGCACATTCTGCCTC
** * * * * *
20682392 TCCGATCGGTTGATCGCCCGCACGCTTGTTTCGTGGGTTGACTTAAGCATATGGAGTTCATCCCC
64 TCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCAT-TCC
* * * *
20682457 A-ATCTAAGCATACAGAGTTCATTCCTAGTCGAAGATCAGATCGGATCGAGGG-T-T----GC-G
128 ATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAG
* * * * *
20682514 AT--AGTAGGATCGATAGCACGCAAGGGGGATCGGGTCGATCCTCGACTTGCGCATTCTGCCTCT
193 ATCGAGCAGGATC-ACAGCACG-AGGGGGGACCGGGTC-ATCCTCG-CTTGCACATTCTGCCTCT
* *
20682577 CTTGTGGCTGAGCGCCCACACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
254 CTCGTGGCTGAGCGCCC-CACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* * * * * * *
20682642 TCTAAGCCCTAGCCGGACCGAGGGTTATGGCAACGGGATCT-GCAGCATGCAGAGGGGGACTGGG
318 TCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACGAGA-CTGGCAGCACGCAGAGAGGGACTAGA
** *
20682706 CTGATCCCCGGCTTACGTATTATGCCTCTTCGATCGACTCAACGCCCGCACGCTCATTTCAT-GG
382 CTGATCCCCGGCTTACACATTATGCCTCTTCGATCGACTCAACACCCGCACGCTCATTTCATGGG
*
20682770 -G-TTATG-GAGTCCATTC-CTAGTCTAAGATCAGACCAGA-CTGAGGGTTG
447 TGATTATGAGAGTCCATTCAC-AGTCTAAGATCAGACCAGATC-AAGGGTTG
* **
20682817 TGGTAGCAGGATCGACAGCACATAGGAGGGATCGGGCTGATCCCGGCTTGCGTATTCTGCCTCTC
1 CGGTAGCAGGATCGACAGCACATAGGAGGGATCGGGCTGATCCCGGCTTGCACATTCTGCCTCTC
* * **
20682882 CGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGGATACAGAGTTCATTCCATG
66 CGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCATG
*
20682947 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCTAGGGTTGTGGCAGCAGGAT
131 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCA-GAT
*
20683012 CAGCAGCAGGATCAACAGCACGGAGGGGGGACCGAGTCATTCCTCAGCTTGCACATTCTGCCTCT
195 C-G-AGCAGGATC-ACAGCAC-GAGGGGGGACCGGGTCA-TCCTC-GCTTGCACATTCTGCCTCT
* * * * *
20683077 C-CGACTGGCTGAGCACCCCACACTCATTTTGTGGGTTGGCTTAGGTATACGGAGTTCATTCCAT
254 CTCG--TGGCTGAGCGCCCCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
*
20683141 GTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAAC
317 GTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAAC
20683176 AGGACCAGCA
Statistics
Matches: 695, Mismatches: 112, Indels: 84
0.78 0.13 0.09
Matches are distributed among these distances:
487 3 0.00
488 116 0.17
489 72 0.10
490 2 0.00
491 1 0.00
492 1 0.00
493 4 0.01
494 2 0.00
495 8 0.01
496 4 0.01
497 2 0.00
499 7 0.01
500 282 0.41
501 171 0.25
502 18 0.03
503 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (496 bp):
CGGTAGCAGGATCGACAGCACATAGGAGGGATCGGGCTGATCCCGGCTTGCACATTCTGCCTCTC
CGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCATG
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGATC
GAGCAGGATCACAGCACGAGGGGGGACCGGGTCATCCTCGCTTGCACATTCTGCCTCTCTCGTGG
CTGAGCGCCCCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
CCAGCCGGACCGAGGGTTGTGGCAACGAGACTGGCAGCACGCAGAGAGGGACTAGACTGATCCCC
GGCTTACACATTATGCCTCTTCGATCGACTCAACACCCGCACGCTCATTTCATGGGTGATTATGA
GAGTCCATTCACAGTCTAAGATCAGACCAGATCAAGGGTTG
Found at i:20683674 original size:26 final size:26
Alignment explanation
Indices: 20683644--20683696 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20683634 GTTGGCTTAG
20683644 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
20683670 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20683696 G
1 G
20683697 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20690264 original size:26 final size:26
Alignment explanation
Indices: 20690234--20690286 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20690224 GTTGACTTAG
* *
20690234 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
20690260 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
20690286 G
1 G
20690287 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:20690772 original size:26 final size:26
Alignment explanation
Indices: 20690735--20690787 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20690725 GTTGGCTTAG
*
20690735 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
20690761 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20690787 G
1 G
20690788 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20691595 original size:159 final size:160
Alignment explanation
Indices: 20691218--20691776 Score: 568
Period size: 158 Copynumber: 3.5 Consensus size: 160
20691208 CGGCATGTAG
* * * *
20691218 ATTCTGCCTCTCCGG-CTGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGG
1 ATTCTGCCTCTTCGGTC-GGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGG
* * *
20691282 AGTTCATTCCATCTCTAAGCCCCAGTCAGACTGAGGGTTGTGGCAGCGGGATCGGTAGCACGCA-
65 AGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAG
* *
20691346 AGGGGGATCGGGCCGAT-CCTCG-ACTTGTGC
130 AGGGGGATCGGGCCGATCCCTAGCA-TTGCGC
* * * * ** *
20691376 ATTCTGCCTTTTCGGTCGGCTGAGTGCTCGCACGCCCGTTTTATGGGTTGAATTAGGCATAGGGA
1 ATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGA
**
20691441 GTTCATTCCATGTCTAAGCCCCAGCC-GAACTGAGGGTTGTGGCAGCGGGGCCGGCAGCACGCAG
66 GTTCATTCCATGTCTAAGCCCCAGCCAG-ACTGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAG
*
20691505 AGGGGGAAT-AGGCCGATCCCTAGCATT-CGC
130 AGGGGG-ATCGGGCCGATCCCTAGCATTGCGC
* * * * * *
20691535 ATTATGCCTCTTCGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAG-TTATGCATACAG
1 ATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTG-GCTTAGGCATACGG
* ** *** ** * *
20691599 AGTTCATTTCGA-GTCTAAG-ATCAGACCAGACTGAGGGTTGCACCAGCAAGATCGACAGCACGT
65 AGTTCA-TTCCATGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGCAGCGGGATCGGCAGCACGC
**
20691662 AG-GGGGGATCGGGCCGATCCCCGGC-TTGCGC
128 AGAGGGGGATCGGGCCGATCCCTAGCATTGCGC
* *** * *
20691693 ATTCTGCCTC-TCTGGTCGACTGAGCGCCCGCACGCTTATTTCGTAGGTTGGCTTAGGCATACGG
1 ATTCTGCCTCTTC-GGTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGG
20691757 AGTTCATTCCATGTCTAAGC
65 AGTTCATTCCATGTCTAAGC
20691777 ATACGGAGTT
Statistics
Matches: 331, Mismatches: 54, Indels: 31
0.80 0.13 0.07
Matches are distributed among these distances:
157 12 0.04
158 196 0.59
159 109 0.33
160 13 0.04
161 1 0.00
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (160 bp):
ATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGA
GGGGGATCGGGCCGATCCCTAGCATTGCGC
Found at i:20691799 original size:26 final size:26
Alignment explanation
Indices: 20691749--20691801 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20691739 GTTGGCTTAG
*
20691749 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
20691775 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
20691801 G
1 G
20691802 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:20692633 original size:26 final size:26
Alignment explanation
Indices: 20692596--20692648 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20692586 GTTGGCTTAG
*
20692596 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
20692622 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20692648 G
1 G
20692649 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20693005 original size:26 final size:26
Alignment explanation
Indices: 20692975--20693027 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20692965 GTTGACTTAG
20692975 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * * *
20693001 GCATATGGAGTTCGTTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20693027 G
1 G
20693028 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20693506 original size:26 final size:26
Alignment explanation
Indices: 20693476--20693527 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20693466 GTTGGCTTAG
20693476 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
20693502 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20693528 AATCGGTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20693864 original size:26 final size:26
Alignment explanation
Indices: 20693827--20693878 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
20693817 GTTGACTTAG
* *
20693827 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
20693853 GCATAC-GAAGTTCATTCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
20693879 CATCGGACCG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:20694162 original size:158 final size:158
Alignment explanation
Indices: 20693892--20694196 Score: 373
Period size: 158 Copynumber: 1.9 Consensus size: 158
20693882 CGGACCGAAC
*
20693892 CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCTCGACATGATCAT
1 CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCTCGACATGAGCAT
* * * * *
20693957 TCTGCCTCTCCAGCCGACTGATCGCCCGCACGCCTGTTTCGTGGGTTGGGTTAGGCATAAGGAGT
66 TATGCCTCTCCAGCCGACTGAGCGCCCGCACGCCTATTTCGTGGGTTGGCTTAGGCATAAGGACT
*
20694022 TCATTCCATGTCTAAGCCCCCGCCGGAT
131 TCATTCCATGTCCAAGCCCCCGCCGGAT
* * * * * * * *
20694050 CGAGGGTTGTGGCAGCGGGATCGACAGCACGTAGGGGGGGATCGGGCCTATCC-CTGGCTTGCGC
1 CGAGGGTTGTGGCAGCAGGATCGACAGCACGCA-GGGGGGACCGAGCCGATCCTC-GACATGAGC
* * * ** *
20694114 ATTATGCCTCTCCGGCCGGCTGGGCGCCCGTGCG-CTCATTTCGT-GGTTGGCTTAGGCATACGG
64 ATTATGCCTCTCCAGCCGACTGAGCGCCCGCACGCCT-ATTTCGTGGGTTGGCTTAGGCATAAGG
20694177 ACTTCATTCCATGTCCAAGC
128 ACTTCATTCCATGTCCAAGC
20694197 ATAGGGAGTT
Statistics
Matches: 123, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
158 69 0.56
159 54 0.44
ACGTcount: A:0.16, C:0.29, G:0.33, T:0.22
Consensus pattern (158 bp):
CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCTCGACATGAGCAT
TATGCCTCTCCAGCCGACTGAGCGCCCGCACGCCTATTTCGTGGGTTGGCTTAGGCATAAGGACT
TCATTCCATGTCCAAGCCCCCGCCGGAT
Found at i:20695085 original size:26 final size:26
Alignment explanation
Indices: 20695049--20695101 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20695039 GTTGGCTTAG
20695049 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
20695075 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20695101 G
1 G
20695102 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20695446 original size:26 final size:26
Alignment explanation
Indices: 20695416--20695467 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20695406 TTGACTTAAT
20695416 CATACAGAGT-TCATCTCC-AGTCTAAG
1 CATACAGAGTGT-AT-TCCAAGTCTAAG
*
20695442 CATACGGAGTGTATTCCAAGTCTAAG
1 CATACAGAGTGTATTCCAAGTCTAAG
20695468 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 3 0.13
26 19 0.83
27 1 0.04
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACAGAGTGTATTCCAAGTCTAAG
Found at i:20695635 original size:25 final size:25
Alignment explanation
Indices: 20695601--20695648 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
20695591 TGGCTTGGGC
20695601 ATACGAAGTTCATTCCAAGTCTAAG
1 ATACGAAGTTCATTCCAAGTCTAAG
* *
20695626 ATACGGAGTTCATTCCCAGTCTA
1 ATACGAAGTTCATTCCAAGTCTA
20695649 GGATTTTGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
ATACGAAGTTCATTCCAAGTCTAAG
Found at i:20696309 original size:26 final size:26
Alignment explanation
Indices: 20696259--20696311 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20696249 GTTGACTTAG
*
20696259 GCATATGGAGTTCATCCTCAGTCTAA
1 GCATATGGAGTTCATCCTCAATCTAA
20696285 GCATATGGAGTTCATTCC-CAATCTAA
1 GCATATGGAGTTCA-TCCTCAATCTAA
20696311 G
1 G
20696312 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCTCAATCTAA
Found at i:20697486 original size:26 final size:26
Alignment explanation
Indices: 20697456--20697508 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20697446 GTTGACTTAG
20697456 GCATATGGAGTTCATCCCCAATCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
* *
20697482 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
20697508 G
1 G
20697509 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAATCTAA
Found at i:20697850 original size:26 final size:26
Alignment explanation
Indices: 20697798--20697850 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20697788 GTTGGCTTAG
*
20697798 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGGAGTTCATTCCATGTCTAA
20697824 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
20697850 G
1 G
20697851 AGTTTGGAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:20698494 original size:26 final size:26
Alignment explanation
Indices: 20698464--20698516 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20698454 GTTGACTTAG
* *
20698464 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
20698490 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
20698516 G
1 G
20698517 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:20698950 original size:158 final size:164
Alignment explanation
Indices: 20698778--20699155 Score: 493
Period size: 170 Copynumber: 2.3 Consensus size: 164
20698768 GCGCCTGAAT
* * *
20698778 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAA-CTTGACTG
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATC-GGACCG
20698842 A-GG-GT-T-C-CAAC-AGTAGGATCGACAGCACACAGGGGGGATCGGGCCGATCCCC-AGCTTG
65 AGGGTGTGTACACAACGAGTAGGATCGACAGCACACAGGGGGGATCGGGCCGATCCCCGA-CTTG
* *
20698900 CGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCAC
129 CGCATTCTACCTCTCCGACCGGCTGAGGGCCCGCAC
* * **
20698936 GCTCGTTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGA
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGA
* **
20699001 GGGTTGTGGTAGCAGGACCACGAGTAGGATCGACAGCATGCAGGGGGGATCGGGCCGATCCCCGA
66 GGG-TGT-GTA-C---ACAACGAGTAGGATCGACAGCACACAGGGGGGATCGGGCCGATCCCCGA
*
20699066 CTTGCGCATTCTACCTCTCCGACTGGCTGAGGGCCCGCAC
125 CTTGCGCATTCTACCTCTCCGACCGGCTGAGGGCCCGCAC
* *
20699106 ACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
20699156 CATACAGAGT
Statistics
Matches: 189, Mismatches: 17, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
158 56 0.30
159 3 0.02
161 2 0.01
163 1 0.01
165 1 0.01
169 3 0.02
170 122 0.65
171 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (164 bp):
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGA
GGGTGTGTACACAACGAGTAGGATCGACAGCACACAGGGGGGATCGGGCCGATCCCCGACTTGCG
CATTCTACCTCTCCGACCGGCTGAGGGCCCGCAC
Found at i:20699165 original size:26 final size:26
Alignment explanation
Indices: 20699129--20699181 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20699119 GTTGACTTAG
*
20699129 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20699155 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20699181 G
1 G
20699182 ATCTAATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20699343 original size:26 final size:26
Alignment explanation
Indices: 20699313--20699365 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20699303 GTTGGCTTAG
**
20699313 GCATAAGGACTTCATTCCTTGTCTAA
1 GCATAAGGACTTCATTCCCAGTCTAA
* *
20699339 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGACTTCATTCCCAGTCTAA
20699365 G
1 G
20699366 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATAAGGACTTCATTCCCAGTCTAA
Found at i:20699344 original size:184 final size:184
Alignment explanation
Indices: 20699035--20699366 Score: 479
Period size: 184 Copynumber: 1.8 Consensus size: 184
20699025 TAGGATCGAC
* * * * *
20699035 AGCATGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGACTGGCTGAGGGC
1 AGCATGCAGGGGGGACCGAGCCGATCCCAGACTTGCGCATTCTACCTCTCCGACCGGCTGAGCGC
* * * *
20699100 CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAG
66 CCACACACTCGTTTCATGGGTTGACTTAGGCATAAGGACTTCATCCCCAGTCTAAGCATACAGAG
*
20699165 TTCATTCCTAGTCTAAGATCTAATCAGACTGAGGGTTGTGGTAGCAGGATCAGT
131 TTCATTCCCAGTCTAAGATCTAATCAGACTGAGGGTTGTGGTAGCAGGATCAGT
*
20699219 AGCATGCAGAGGGGGACCGAGCCGATCCTCAG-CTTG-GCATTCTGCCTCTCCGACCGGCTGAGC
1 AGCATGCAG-GGGGGACCGAGCCGATCC-CAGACTTGCGCATTCTACCTCTCCGACCGGCTGAGC
* * * ** *
20699282 GCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGACTTCATTCCTTGTCTAAGCATACGG
64 GCCCACACACTCGTTTCATGGGTTGACTTAGGCATAAGGACTTCATCCCCAGTCTAAGCATACAG
20699347 AGTTCATTCCCAGTCTAAGA
129 AGTTCATTCCCAGTCTAAGA
20699367 GTTTGAGCCA
Statistics
Matches: 129, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
184 107 0.83
185 20 0.16
186 2 0.02
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.24
Consensus pattern (184 bp):
AGCATGCAGGGGGGACCGAGCCGATCCCAGACTTGCGCATTCTACCTCTCCGACCGGCTGAGCGC
CCACACACTCGTTTCATGGGTTGACTTAGGCATAAGGACTTCATCCCCAGTCTAAGCATACAGAG
TTCATTCCCAGTCTAAGATCTAATCAGACTGAGGGTTGTGGTAGCAGGATCAGT
Found at i:20699451 original size:11 final size:11
Alignment explanation
Indices: 20699435--20699478 Score: 79
Period size: 11 Copynumber: 4.0 Consensus size: 11
20699425 CCCGGGGCAC
20699435 CATCGTCGGAG
1 CATCGTCGGAG
20699446 CATCGTCGGAG
1 CATCGTCGGAG
*
20699457 CATCGCCGGAG
1 CATCGTCGGAG
20699468 CATCGTCGGAG
1 CATCGTCGGAG
20699479 AGCCTAACCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.18, C:0.30, G:0.36, T:0.16
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:20700653 original size:26 final size:26
Alignment explanation
Indices: 20700617--20700669 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20700607 GTTGACTTAG
* *
20700617 GCATACGGAGTTTATACCTAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
* *
20700643 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
20700669 G
1 G
20700670 ATTGAAACGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:20701544 original size:26 final size:26
Alignment explanation
Indices: 20701514--20701566 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20701504 GTTGACTTAG
*
20701514 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
20701540 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20701566 G
1 G
20701567 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20703110 original size:171 final size:171
Alignment explanation
Indices: 20702785--20703111 Score: 361
Period size: 171 Copynumber: 1.9 Consensus size: 171
20702775 CTGAGTGCCT
* * *
20702785 GCACACTCGTTTCATGGATTGGCTTAGGCATACGAAGTTCATTCCATGTCTATGATCAGACCAGA
1 GCACACTCGTTTCATGGATTGGCTTAGGCATACGAAGTTCATTCCATGTCCAAGACCAGACCAGA
* * * *
20702850 CGGAGGGTTGCAACAGCAGGACCAGCAGCAGGAACGGTAGCACGCAGGGGGGGACCAGGCTGAAC
66 CCGAGGGTTGCAACAGCAGGACCAGCAGCAGGAACAGTAGCACACAGAGGGGGACCAGGCTGAAC
* *
20702915 TCCGACTTGCGCATTCTACCTCTCCAGTCGGCTGAGCACCC
131 TACGACTTGCGCATTATACCTCTCCAGTCGGCTGAGCACCC
* * * * **
20702956 GCACACTCGTTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGCCCTAG-CTGG
1 GCACACTCGTTTCATGGATTGGCTTAGGCATACGAAGTTCATTCCATGTCCAAGACC-AGACCAG
**** * * * * *
20703020 ACCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCAGTAGCACATAGAGGGGGATC-GAGCTGA
65 ACCGAGGGTTGCAACAGCAGGACCAGCAGCAGGAACAGTAGCACACAGAGGGGGACCAG-GCTGA
* * * * *
20703084 TCTAGGGCTTGCGTATTATGCCTCTCCA
129 ACTACGACTTGCGCATTATACCTCTCCA
20703112 ACCGGCCTCT
Statistics
Matches: 125, Mismatches: 29, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
170 1 0.01
171 122 0.98
172 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (171 bp):
GCACACTCGTTTCATGGATTGGCTTAGGCATACGAAGTTCATTCCATGTCCAAGACCAGACCAGA
CCGAGGGTTGCAACAGCAGGACCAGCAGCAGGAACAGTAGCACACAGAGGGGGACCAGGCTGAAC
TACGACTTGCGCATTATACCTCTCCAGTCGGCTGAGCACCC
Found at i:20703196 original size:26 final size:26
Alignment explanation
Indices: 20703167--20703219 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20703157 GTTGACTTAG
20703167 GCATACAAAGTTCATCCCCAGTGTAA
1 GCATACAAAGTTCATCCCCAGTGTAA
** * *
20703193 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACAAAGTTCATCCCCAGTGTAA
20703219 G
1 G
20703220 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTGTAA
Found at i:20703719 original size:26 final size:26
Alignment explanation
Indices: 20703665--20703720 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
20703655 CGGGTTGGCT
* **
20703665 TAAGCATATGGAGTTCATTCCATTTC
1 TAAGCATACGGAGTTCATTCCATGAC
20703691 TAAGCATACGGAGTTCATTCCCA-GAC
1 TAAGCATACGGAGTTCATT-CCATGAC
20703717 TAAG
1 TAAG
20703721 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCATGAC
Found at i:20705431 original size:159 final size:156
Alignment explanation
Indices: 20705171--20705638 Score: 444
Period size: 159 Copynumber: 3.0 Consensus size: 156
20705161 AAGATTGGAT
* * * * * * * *
20705171 CGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACACAGGGGGGACTGGGT-CGATCCCCGACTT
1 CGGATCGAGGGTTACGGCAACAGGACCGACAGCACGCA-GGGGGAC-CGGTCCGATCCCCGACTT
* * * * * * * *
20705235 GTGCATTCTGCCTTTTCGGCCGGCTGAGCACCTGCACGCTCATTTCATGGGTTGGCCTAGGCATA
64 GCGCATTATGCCTCTCCGGTCGGCTTAGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
* * *
20705300 GGGAGTTCTTTCCACGTCTAAGCCCCAG-
129 CGGAGTTCATTCCACGTCTAAG-ACCAGA
** * *** * *
20705328 CGAGATCGAGGGTTGTGGTAGTGGGACCGACAGCACGCAGAGGGGGACCAGG-CTGATCCCCGGC
1 CG-GATCGAGGGTTACGGCAACAGGACCGACAGCACGC--AGGGGGACC-GGTCCGATCCCCGAC
* * *
20705392 TTGCGCATTATGCCTCTCCGATCGGCTTAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCA
62 TTGCGCATTATGCCTCTCCGGTCGGCTTAGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCA
* *
20705457 TACGGAGTTCATTCTCA-ATCTAAGATCAGA
127 TACGGAGTTCATTC-CACGTCTAAGACCAGA
* * * *
20705487 CCGGATCGAGGGTTACGGCAACAGGATCGATAGCACGCAGGGGGATCGGTCCGATCCTCGACTTG
1 -CGGATCGAGGGTTACGGCAACAGGACCGACAGCACGCAGGGGGACCGGTCCGATCCCCGACTTG
* *
20705552 CGCATTTTGCCTCTCCGGTCGG-TTGAGCACCTGCACGTTCGTTTCATGGGTTGGCTTAGGCATA
65 CGCATTATGCCTCTCCGGTCGGCTT-AGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
*
20705616 CAGAGTTCATTCC-CAGTCTAAGA
129 CGGAGTTCATTCCAC-GTCTAAGA
20705639 TGAGACCAGA
Statistics
Matches: 254, Mismatches: 45, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
156 5 0.02
157 96 0.38
158 31 0.12
159 117 0.46
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (156 bp):
CGGATCGAGGGTTACGGCAACAGGACCGACAGCACGCAGGGGGACCGGTCCGATCCCCGACTTGC
GCATTATGCCTCTCCGGTCGGCTTAGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
GAGTTCATTCCACGTCTAAGACCAGA
Found at i:20705602 original size:157 final size:157
Alignment explanation
Indices: 20705137--20705779 Score: 515
Period size: 157 Copynumber: 4.2 Consensus size: 157
20705127 CCCAATCTAA
* ** * * *
20705137 GCATACAGAGTTCATTCTGAGTCTAAGATTGGATCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
1 GCATACAGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGACA
* * * * * * * *
20705202 GCACACAGGGGGGACTGGGT-CGATCCCCGACTTGTGCATTCTGCCTTTTCGGCCGGCTGAGCAC
66 GCACGCA-GGGGGA-TCGGTCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGTTGAGCAC
* *
20705266 CTGCACGCTCATTTCATGGGTTGGCCTAG
129 CTGCACGCTCGTTTCATGGGTTGGCTTAG
** * ** * ** ** *
20705295 GCATAGGGAGTTCTTTC-CACGTCTAAGCCCCAG--CGAGATCGAGGGTTGTGGTAGTGGGACCG
1 GCATACAGAGTTCATTCTCA-GTCTAAG-ATCAGACCG-GACCGAGGGTTACGGTAGCAGGATCG
* * * *
20705357 ACAGCACGCAGAGGGGGACCAGG-CTGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTT-
63 ACAGCACGC--AGGGGGATC-GGTCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGG-TTG
* *
20705420 AGCGCCTGCACGCTCGTTTCATGGGTTGACTTAG
124 AGCACCTGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * *
20705454 GCATACGGAGTTCATTCTCAATCTAAGATCAGACCGGATCGAGGGTTACGGCAACAGGATCGATA
1 GCATACAGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGACA
* *
20705519 GCACGCAGGGGGATCGGTCCGATCCTCGACTTGCGCATTTTGCCTCTCCGGTCGGTTGAGCACCT
66 GCACGCAGGGGGATCGGTCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGTTGAGCACCT
*
20705584 GCACGTTCGTTTCATGGGTTGGCTTAG
131 GCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
20705611 GCATACAGAGTTCATTCCCAGTCTAAGATGAGACCAGACCAAGGGTTAC-G-A-CA-G--C-AC-
1 GCATACAGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGACA
* * * * * **
20705668 GTA-G--GGGGGATCGGGT-CGATCCCCGACTTGCACATTCTACCT-TTC---CAATTGAGCA-C
66 GCACGCAGGGGGATC-GGTCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGTTGAGCACC
*
20705724 TCACACGCTCGTTTCATGGGTTGGCTTAG
130 T-GCACGCTCGTTTCATGGGTTGGCTTAG
*
20705753 GCATATAGAGTTCATTC-CATGTCTAAG
1 GCATACAGAGTTCATTCTCA-GTCTAAG
20705780 CCCCAGTCGG
Statistics
Matches: 398, Mismatches: 71, Indels: 48
0.77 0.14 0.09
Matches are distributed among these distances:
141 4 0.01
142 56 0.14
145 2 0.01
146 30 0.08
147 3 0.01
148 1 0.00
149 2 0.01
150 1 0.00
151 1 0.00
153 1 0.00
154 2 0.01
155 1 0.00
156 5 0.01
157 116 0.29
158 52 0.13
159 115 0.29
160 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACAGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGACA
GCACGCAGGGGGATCGGTCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGTTGAGCACCT
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:20706279 original size:159 final size:158
Alignment explanation
Indices: 20705970--20706467 Score: 517
Period size: 159 Copynumber: 3.1 Consensus size: 158
20705960 TAAGCATGCA
* ** * ** * **
20705970 GAGTTCATTCCCA-GTCTAAG-ATCAGACTGGACCGAGGGTTACGACAGCAGGATCGGTAGCACA
1 GAGTTCATT-CCATGTCTAAGCACCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACA
* * * *
20706033 CAGGGGGGACAAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGTGTCC-GCA
65 CAGAGGGGACAA-GCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACCGGCTAAGTG-CCTGCA
*
20706097 CGAC-CATTTCATGGGTTGGCTTAGGCATAGG
128 CG-CTCATTTCATGGGTTGGCTTAGGCATACG
* * *
20706128 GAGTTCATTCCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACAC
1 GAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACAC
* * * * *
20706192 AGAGGGGAATCAAACCGATCCCCAGCTTGTGCATTATACCTCTCCGACCGGCTCAGTGCCTGAAC
66 AGAGGGG-A-CAAGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACCGGCTAAGTGCCTGCAC
* *
20706257 GCTCATTTCGTGGGTTGACTTAGGCATACG
129 GCTCATTTCATGGGTTGGCTTAGGCATACG
***
20706287 GAGTTCATTACCA-GTCTAAG-ATGGGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACA
1 GAGTTCATT-CCATGTCTAAGCACCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACA
* * * * ** *
20706350 CAGAGGCGGACCAGGTCGGTCCCTAGCTTGTGTGTTCTGCCTCTCCGACCGG-TAAAGCGCCTGC
65 CAGAGG-GGA-CAAGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACCGGCT-AAGTGCCTGC
* *
20706414 ACGCTCGTTTCATGGGTTGGCTTAGGTATACG
127 ACGCTCATTTCATGGGTTGGCTTAGGCATACG
*
20706446 GAGTTCATTCCATGACTAAGCA
1 GAGTTCATTCCATGTCTAAGCA
20706468 AGTGGAGTTC
Statistics
Matches: 283, Mismatches: 45, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
157 3 0.01
158 60 0.21
159 211 0.75
160 9 0.03
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACAC
AGAGGGGACAAGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACCGGCTAAGTGCCTGCACGC
TCATTTCATGGGTTGGCTTAGGCATACG
Found at i:20706828 original size:26 final size:26
Alignment explanation
Indices: 20706798--20706850 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20706788 GTTGACTTTG
20706798 GCATACGAAGTTCA-TCCCCAGTCTAA
1 GCATACGAAGTTCAGT-CCCAGTCTAA
* *
20706824 GCATAGGGAGTTCAGTCCCAGTCTAA
1 GCATACGAAGTTCAGTCCCAGTCTAA
20706850 G
1 G
20706851 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCAGTCCCAGTCTAA
Found at i:20707125 original size:159 final size:157
Alignment explanation
Indices: 20706824--20707168 Score: 361
Period size: 159 Copynumber: 2.2 Consensus size: 157
20706814 CCCAGTCTAA
* * * *
20706824 GCATAGGGAGTTCAGTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGTCGGATCAGTA
1 GCATAGGGAGTTCA-TTCCAGTCTAAGACCCAACCGGACCGAGGGTTGTGGCAGTCGGATCAGCA
* * * ***
20706889 GCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCAACTGAGCTTG
65 GCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAACTGAGCGCC
* * **
20706954 CGTTCACCCGTTTCGTGGGTTGGATTAG
130 CGTTAACCCGTTTCATGGGTTACATTAG
* ** ** *
20706982 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAATTGGACCGAGGGTTGTGGTTGTGGGATC-GAC
1 GCATAGGGAGTTCATTCCA-GTCTAAGACCCAACCGGACCGAGGGTTGTGGCAGTCGGATCAG-C
* * * **
20707046 AGCATGCAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGACCGGCTGAGCG
64 AGCACGCAG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAACTGAGCG
* *
20707111 CCCG-TAAGCTCGTTTCATGGGTTACCTTAG
128 CCCGTTAA-CCCGTTTCATGGGTTACATTAG
* *
20707141 GCAAACGGAGTTCATTCCCAGTCTAAGA
1 GCATAGGGAGTTCATT-CCAGTCTAAGA
20707169 GTTTGAGCCA
Statistics
Matches: 152, Mismatches: 30, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
157 5 0.03
158 57 0.38
159 87 0.57
160 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.23
Consensus pattern (157 bp):
GCATAGGGAGTTCATTCCAGTCTAAGACCCAACCGGACCGAGGGTTGTGGCAGTCGGATCAGCAG
CACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAACTGAGCGCCC
GTTAACCCGTTTCATGGGTTACATTAG
Found at i:20708145 original size:158 final size:156
Alignment explanation
Indices: 20707763--20708180 Score: 441
Period size: 159 Copynumber: 2.6 Consensus size: 156
20707753 TACCACCCAT
* * *
20707763 TCGATCCCTGACTTGCGCATTCTGCCTCTCCG-GCTGGCTGAGCGCCCGCACTCGCGTTTCGTTG
1 TCGATCCCTGACTTGCGCATTCTGCCTCTCCGATC-GGCTAAGCGCCCGCACT-TCGTTTCG-TG
* * * ** * *
20707827 GTTTGCTTAGGCATAGGGAGTTAATTCCATGTCTAATCCCCAATCGAACCGAGGGTTGTGGCAGC
63 GGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAA-GACCAATCGAACCAAGGGGTGTGGCAGC
* * *
20707892 GGGATCGACAGCACGCAGAGGGCGATCGGG
127 AGGATCGACAGCACACAGAGGGCGACCGGG
* * * * * *
20707922 CCGATCCC-CAGCTTGCGCATTATGCCTCTCCGATCGGCTCAA-CACCCGCACGCTCGTTTCATG
1 TCGATCCCTGA-CTTGCGCATTCTGCCTCTCCGATCGGCT-AAGCGCCCGCAC-TTCGTTTCGTG
* * ** * *
20707985 GGTTGACTTGGGCATACAGAGTTCATTCCCA-GTCTAAGATTAGATCGGACCAAGGGGTGTGGTA
63 GGTTG-CTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCA-ATCGAACCAAGGGGTGTGGCA
* *
20708049 GCAGGATCGATAGCACACAG-GGGGGACCGGG
125 GCAGGATCGACAGCACACAGAGGGCGACCGGG
*
20708080 TCGATCCCTGACTTGCGCATTCTGCCTCTCCGATCGGCTAAGCGCCCGTACATTCGTTTCGTGGG
1 TCGATCCCTGACTTGCGCATTCTGCCTCTCCGATCGGCTAAGCGCCCGCAC-TTCGTTTCGTGGG
20708145 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 TT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAG
20708181 CATACGGGCT
Statistics
Matches: 211, Mismatches: 37, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
157 5 0.02
158 97 0.46
159 104 0.49
160 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.25
Consensus pattern (156 bp):
TCGATCCCTGACTTGCGCATTCTGCCTCTCCGATCGGCTAAGCGCCCGCACTTCGTTTCGTGGGT
TGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAATCGAACCAAGGGGTGTGGCAGCAGGA
TCGACAGCACACAGAGGGCGACCGGG
Found at i:20708502 original size:210 final size:210
Alignment explanation
Indices: 20708123--20708525 Score: 566
Period size: 210 Copynumber: 1.9 Consensus size: 210
20708113 TCGGCTAAGC
* * *
20708123 GCCCGTACATTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGG
1 GCCCGTACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAGA
* * *
20708188 GCTTCATTCCCAGTGTAAGATCAGACCGGACTAAGGGTTGCGAGAGTAGGACCAGCAGTAGGATC
66 GCTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGAGAGTAGGACCAGCAGTAGGATC
* * * *
20708253 AGCAGGACATAGGGAGGGACTGGGCTGATCCTTGGCTTACGCATTCTACCTCTTCAGCCGGCTTC
131 AGCAGGACATAGGGAGGGACTGGGCCGATCCTCGGCTTACGCATTCTACCTCTCCAACCGGCTTC
20708318 TCTAACCGGTTGATT
196 TCTAACCGGTTGATT
* * *
20708333 GCCCGTACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCATATAG
1 GCCCGTACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA-AG
* *
20708398 AG-TTCATTCCCAGTCTAAGATCATACCAGACCGAGGGTTGC-AGCAGTAGGACCAGCAGTAGGA
65 AGCTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGAG-AGTAGGACCAGCAGTAGGA
*
20708461 TC-GACA-G-CATGCAGGGAGGGA-TCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCAACC
129 TCAG-CAGGACAT--AGGGAGGGACT-GGGCCGATCCTCGGCTTACGCATTCTACCTCTCCAACC
20708522 GGCT
190 GGCT
20708526 GAGCACCCGC
Statistics
Matches: 171, Mismatches: 16, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
208 3 0.02
209 5 0.03
210 161 0.94
211 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (210 bp):
GCCCGTACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAGA
GCTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGAGAGTAGGACCAGCAGTAGGATC
AGCAGGACATAGGGAGGGACTGGGCCGATCCTCGGCTTACGCATTCTACCTCTCCAACCGGCTTC
TCTAACCGGTTGATT
Found at i:20708598 original size:26 final size:26
Alignment explanation
Indices: 20708561--20708613 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20708551 GTTGACTTAG
* *
20708561 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTATAA
*
20708587 GCATACGAAGTTCATTCCCAGTATAA
1 GCATACGAAGTTCATCCCCAGTATAA
20708613 G
1 G
20708614 ATCAAGTCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTATAA
Found at i:20710114 original size:158 final size:156
Alignment explanation
Indices: 20709640--20710139 Score: 486
Period size: 158 Copynumber: 3.2 Consensus size: 156
20709630 CCCAGTCTAA
* * * *
20709640 GCATACGAAGTTCATTCCCA-GTCTAAGATTGGATCAGACTGAGGGTTGTGACAATAGGATCAAC
1 GCATACGAAGTTCATT--CATGTCTAAGATTGGATCAGACCGAAGGTTGTGACAGTAGGATCGAC
* * * * *
20709704 AGCACGAAAGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTTCTGTCGGCTGAGCAC
64 AGCACGTAGGGGGGACCGGGTCGAT-CCCGGCTTACGCATTCTGCCTCTTCGGTCGGCTGTGCGC
* *
20709769 CAGCATGCTCGTTTCGTGGGTTGGCTTAG
128 CCGAATGCTCGTTTCGTGGGTTGGCTTAG
** * * **** * ** *
20709798 GCATTGGGAGTTCATTCCATATCTAAG-CCCCAGTCAGACCGAAGGTTGTGGCAGCGGGA-CAGG
1 GCATACGAAGTTCATT-CATGTCTAAGATTGGA-TCAGACCGAAGGTTGTGACAGTAGGATC-GA
* * * *
20709861 CAGCACGTAGAGGGGGACCGGGTCGATCCCTGGCTTACGCATTATGCCTCTCCGGTCGACT-TAA
63 CAGCACGTAG-GGGGGACCGGGTCGATCCC-GGCTTACGCATTCTGCCTCTTCGGTCGGCTGT-G
* *
20709925 TGCCCGAATGCTCGTTTCGTGGGTTGACTTAG
125 CGCCCGAATGCTCGTTTCGTGGGTTGGCTTAG
* * * *
20709957 GCATACGAAGTTCATTCTTGGTCTAAGATTGGACCAGACCGAAGGTTGCGATAGTAGGATCGACA
1 GCATACGAAGTTCATTCAT-GTCTAAGATTGGATCAGACCGAAGGTTGTGACAGTAGGATCGACA
* * * *
20710022 GCATGTAGGGGGGATCAGGTCGATCCTCGACTTACGCATTCTGCCTCTTCGGTCGGCTGTGCGCC
65 GCACGTAGGGGGGACCGGGTCGATCC-CGGCTTACGCATTCTGCCTCTTCGGTCGGCTGTGCGCC
* * * *
20710087 CGTACGCTCCTTTCATGGGTTGGCTTAG
129 CGAATGCTCGTTTCGTGGGTTGGCTTAG
*
20710115 GCATACGGAGTTCATTCCATGTCTA
1 GCATACGAAGTTCATT-CATGTCTA
20710140 TGCATATGGA
Statistics
Matches: 269, Mismatches: 61, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 5 0.02
158 140 0.52
159 122 0.45
160 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (156 bp):
GCATACGAAGTTCATTCATGTCTAAGATTGGATCAGACCGAAGGTTGTGACAGTAGGATCGACAG
CACGTAGGGGGGACCGGGTCGATCCCGGCTTACGCATTCTGCCTCTTCGGTCGGCTGTGCGCCCG
AATGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20710352 original size:184 final size:183
Alignment explanation
Indices: 20709977--20710371 Score: 497
Period size: 184 Copynumber: 2.1 Consensus size: 183
20709967 TTCATTCTTG
* * * *
20709977 GTCTAAGATTGGACCAGACCGAAGGTTGCGATAGTAGGATCGACAGCATGTAGGGGGGATCAGGT
1 GTCTAAGATTGGACCAGACCGAGGGTTACGATAGTAGGATCGACAGCATGCAGGGGGGACCAGGT
* ** ** * * * *
20710042 CGATCCTCGACTTACGCATTCTGCCTCTTCGGTCGGCTGTGCGCCCGTACGCTCCTTTCATGGGT
66 CGATCCCCGACTTACAAATTCTGCCTCTTCGACCAGCTGAGCGCCCGCACGCTCCTTTCATAGGT
* * *
20710107 TGGCTTAGGCATACGGAGTTCATTCCATGTCTATGCATATGGAGTTCATTCCCA
131 TGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCATACGGAGTT-ATTCCCA
* * *
20710161 ATCTAAGATCGGACCAGACCGAGGGTTACGGTAGTAGGATCGACAGCATGCAGGGGTGGACCTA-
1 GTCTAAGATTGGACCAGACCGAGGGTTACGATAGTAGGATCGACAGCATGCAGGGG-GGACC-AG
* * * **
20710225 GTCGGTCCCCGGCTTACAAATTCTGCCTCTTTCGACCAGCTGAGCGCCTGCACGCTTGTTTCATA
64 GTCGATCCCCGACTTACAAATTCTGCCTC-TTCGACCAGCTGAGCGCCCGCACGCTCCTTTCATA
*
20710290 GGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCATACGGAGTT-TTTCCA
128 GGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCATACGGAGTTATTCCCA
* *
20710345 GTCTAAGATTGGACCGGACCAAGGGTT
1 GTCTAAGATTGGACCAGACCGAGGGTT
20710372 GCGGCAGCAG
Statistics
Matches: 179, Mismatches: 29, Indels: 6
0.84 0.14 0.03
Matches are distributed among these distances:
184 78 0.44
185 28 0.16
186 73 0.41
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (183 bp):
GTCTAAGATTGGACCAGACCGAGGGTTACGATAGTAGGATCGACAGCATGCAGGGGGGACCAGGT
CGATCCCCGACTTACAAATTCTGCCTCTTCGACCAGCTGAGCGCCCGCACGCTCCTTTCATAGGT
TGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCATACGGAGTTATTCCCA
Found at i:20710717 original size:26 final size:25
Alignment explanation
Indices: 20710680--20710758 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 25
20710670 GTTGACTTAG
*
20710680 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCC-AGTCTAA
20710706 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCAT-CCCAGTCTAA
20710732 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCA-TCCCAGTCTAA
20710758 G
1 G
20710759 ATCAGACCAG
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
26 46 0.92
27 4 0.08
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:20711648 original size:158 final size:157
Alignment explanation
Indices: 20711256--20711916 Score: 524
Period size: 158 Copynumber: 4.1 Consensus size: 157
20711246 CCCAGTCTAA
* * * *
20711256 GCATATGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGTGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG-ACCGGATCGAGGGTTGCGGCAGTAGGATCGACA
** * * * * ** *
20711321 GCACATAGGGGGGATTGGGCCGATCCCCGGCTTGTGCATTCTGCCTTTCTGATCGGCTGAGCGCC
65 GCACGCAAGGGGGATTGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCTGGCCAGCTGAGCGCC
** * * * **
20711386 CATACGCCCGTTTCATGGCTTGGCTTCT
130 CGCACACTCGTTTCATGGGTTGGCTTAG
* * * *
20711414 GC-TAGGGAGTTCATT-CCATGTCTAAGATCAGACCGGATGGAGGGTTGTGGCA--ACGAGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-GACCGGATCGAGGGTTGCGGCAGTA-G-GATCG
* * * * * * *
20711475 ACAGCATGCAGAGGGGGATCGAGTCGATCCCTGACTTGTGCATTATGCCTCTCTGGCCTGCTCAG
62 ACAGCACGCA-AGGGGGATTGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCTGGCCAGCTGAG
* * *
20711540 CGCCTGCACACTCATTTCATGGGTTGACTTAG
126 CGCCCGCACACTCGTTTCATGGGTTGGCTTAG
* * *
20711572 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGTAGGATCGACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGATCGAGGGTTGCGGCAGTAGGATCGACA
* * * *
20711637 GCACGGAAGGGGGATTGGGTCGGTCCCTGGCTTGCGCATTCTACCTCTCTGGCCAGCTGAGCGCC
65 GCACGCAAGGGGGATTGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCTGGCCAGCTGAGCGCC
* *
20711702 CGCACACTTGTTTCGTGGGTTGGCTTAG
130 CGCACACTCGTTTCATGGGTTGGCTTAG
** * * * *
20711730 GCATACATAGTTCATTCCCAGTCTAAGATCGATCCGGA-CTGAGGGTTACGGTAGCAGGACCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-CCGGATC-GAGGGTTGCGGCAGTAGGATC-G-
* * * * * * * * *
20711794 AACAGGATTAGCAGCACTAGGGGGGATCGGGCCGATCCCCGACTTGCGTATTCTACCTCTCTAG-
62 -ACA-G--CA-C-GCA--A-GGGGGATTGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCTGGC
* * * * *
20711858 CAGGCTGAGCACCCACACACTCATTTCTTAGGTTGGCTTAG
118 CA-GCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAG
20711899 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
20711917 ATGTTTAAGC
Statistics
Matches: 403, Mismatches: 77, Indels: 35
0.78 0.15 0.07
Matches are distributed among these distances:
155 1 0.00
156 4 0.01
157 54 0.13
158 191 0.47
159 54 0.13
160 3 0.01
161 3 0.01
162 1 0.00
164 1 0.00
165 1 0.00
166 2 0.00
168 3 0.01
169 85 0.21
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGATCGAGGGTTGCGGCAGTAGGATCGACAG
CACGCAAGGGGGATTGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCTGGCCAGCTGAGCGCCC
GCACACTCGTTTCATGGGTTGGCTTAG
Found at i:20712083 original size:170 final size:169
Alignment explanation
Indices: 20711667--20712095 Score: 423
Period size: 169 Copynumber: 2.5 Consensus size: 169
20711657 CGGTCCCTGG
* ** *
20711667 CTTGCGCATTCTACCTCTCTGGCCA-GCTGAGCGCCCGCACACTTGTTTCGTGGGTTGGCTTAGG
1 CTTGCGCATTATACCTCTCCAG-CAGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGG
** * * * * *
20711731 CATACATAGTTCATTCCCAGTCTAAGATCGATCCGGACTGAGGGTTACGGTAGCAGGACCAGCAA
65 CATACGGAGTTCATTCCCAGTCTAAGACCCAGCCAGACCGAGGGTTACGGTAGCAGGACCAGCAA
* * * *
20711796 CAGGATTAGCAGCACTAGGGGGGATCGGGCCGATCCCCGA
130 CAGGATCAGCAGCACCAGGGGGGATCCGACCGATCCCCGA
* * * * * * * *
20711836 CTTGCGTATTCTACCTCTCTAGCAGGCTGAGCACCCACACACTCATTTCTTAGGTTGGCTTAGGC
1 CTTGCGCATTATACCTCTCCAGCAGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGC
* * ** * * *
20711901 ATACGGAGTTCATT-CCATGTTTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGATCGGCAG
66 ATACGGAGTTCATTCCCA-GTCTAAGACCCAGCCAGACCGAGGGTTACGGTAGCAGGACCAGCAA
* * *
20711965 CGGGATCAGCAGCACGCAGAGGGGGA-CCGACGGATCCCCGG
130 CAGGATCAGCAGCAC-CAG-GGGGGATCCGACCGATCCCCGA
* * * * * * **
20712006 CTTGTGCATTATGCTTCTCCGGCCGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTTACTTAGGC
1 CTTGCGCATTATACCTCTCCAGCAGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGC
*
20712071 ATACGGAGTTCATCCCCAGTCTAAG
66 ATACGGAGTTCATTCCCAGTCTAAG
20712096 CATATAGAGT
Statistics
Matches: 208, Mismatches: 47, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
168 5 0.02
169 113 0.54
170 81 0.39
171 9 0.04
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (169 bp):
CTTGCGCATTATACCTCTCCAGCAGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGACCCAGCCAGACCGAGGGTTACGGTAGCAGGACCAGCAAC
AGGATCAGCAGCACCAGGGGGGATCCGACCGATCCCCGA
Found at i:20712473 original size:159 final size:157
Alignment explanation
Indices: 20712102--20712524 Score: 361
Period size: 159 Copynumber: 2.7 Consensus size: 157
20712092 TAAGCATATA
* * *
20712102 GAGTTCATTCCCAGTCTAAGATCGGACCTG-ACCGAGGGTTGCGACAGTAGGATCGGCAGCACGC
1 GAGTTCATTCCCAGTCTAACACCAGACC-GAACCGAGGGTTGCG-CAGTAGGATCGGCAGCACGC
*** * * * * ** * * * * *
20712166 AAGGGGGATTGGGCCGATCTTCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCATG
64 AAGGGGGACCAGGCCAATCCTCGGCTTGCGCATTATGCCTCTCCAACCGGCTCAGCACCAGAACG
* * * *
20712231 CCCGTTTGGTGGGTTGGCTTAGGCATAGG
129 CCCGTTTGATGGCTTGACTTAGGCATACG
* * * * * * * *
20712260 GACTTCATT-CAATGTCTAAGCCCCAG-CC-AGACTGAGGGTTGTGGCAGCAAGATCGGTAGCAC
1 GAGTTCATTCCCA-GTCTAA-CACCAGACCGA-ACCGAGGGTTG-CGCAGTAGGATCGGCAGCAC
* *
20712322 GTAGAGGGGGACCAGGCCAATCCTCGGCTTGCGTATTATGCCTCTCCAACCGGCTCAGCACCAGA
62 GCA-AGGGGGACCAGGCCAATCCTCGGCTTGCGCATTATGCCTCTCCAACCGGCTCAGCACCAGA
* *
20712387 ACGCTCGTTTTATGGCTTGACTTAGGCATACG
126 ACGCCCGTTTGATGGCTTGACTTAGGCATACG
* *
20712419 GAGTTCATTCCCAGTCTAATACCAGACCGAACCGAGGGTTGCAGCAGTAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAACACCAGACCGAACCGAGGGTTGC-GCAGTAGGATCGGCAGCACGCA
* ** * * *
20712484 ATGGGGGACTAGGCCGGTCCCCAGCTTGC-CATTTTGCCTCT
65 A-GGGGGACCAGGCCAATCCTCGGCTTGCGCATTATGCCTCT
20712525 TCGACCAGTT
Statistics
Matches: 203, Mismatches: 51, Indels: 22
0.74 0.18 0.08
Matches are distributed among these distances:
157 2 0.01
158 58 0.29
159 140 0.69
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAACACCAGACCGAACCGAGGGTTGCGCAGTAGGATCGGCAGCACGCAA
GGGGGACCAGGCCAATCCTCGGCTTGCGCATTATGCCTCTCCAACCGGCTCAGCACCAGAACGCC
CGTTTGATGGCTTGACTTAGGCATACG
Found at i:20713309 original size:26 final size:26
Alignment explanation
Indices: 20713280--20713332 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20713270 GTTGGCTTAG
*
20713280 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
*
20713306 GCATATAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
20713332 G
1 G
20713333 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:20713319 original size:710 final size:711
Alignment explanation
Indices: 20712040--20713517 Score: 1762
Period size: 710 Copynumber: 2.1 Consensus size: 711
20712030 GGTTGAGCGC
* *
20712040 CCGCACACTCGTTTCGTGGGTTTACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATAGAG
1 CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAG
* * * * *
20712105 TTCATTCCCAGTCTAAGATCGGACCTGACCGAGGGTTGCGACAGTAGGATCGGCAGCACGCAAGG
66 TTCATTCCCAGTCGAAGATCGAACCTGACCGAGGGCTGCGACAGCAGGATCGACAGCACGCAAGG
** * * * * **
20712170 GGGATTGGGCCGATCTTCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCATGCCCG
131 GGGACCGGGCCGATCGTCGGCTTGTGCATTCTACCTCTCCGCCCGGCTGAGCGCCCACACACCCG
** * * *
20712235 TTTGGTGGGTTGGCTTAGGCATAGGGACTTCATTCAATGTCTAAGCCCCAGCCAGACTGAGGGTT
196 TTTCATGGGTTGGCTTAGCCATAGGGACTTCATTCAATGTCAAAGCCCCAGCCAGAATGAGGGTT
** ** *
20712300 GTGGCAGCAAGATCGGTAGCACGTAGAGGGGGACCAGGCCAATCCTCGGCTTGCGTATTATGCCT
261 GTGGCAGCAAGATCGACAGCACACAGAGGGGGACCAGGCCAATCCTCGGCTTGCGCATTATGCCT
* *
20712365 CTCCAACCGGCTCAGCACCAGAACGCTCGTTTTATGGCTTGACTTAGGCATACGGAGTTCATTCC
326 CTCCAACCGGCTCAGCACCAGAACGCTCATTTCATGGCTTGACTTAGGCATACGGAGTTCATTCC
* * * * * *
20712430 CAGTCTAATACCAGACCGAACCGAGGGTTGCAGCAGTAGGATCGACAGCACGCAATGGGGGACTA
391 CAGTCTAAGACCAGACCGAACCAAGGGTTGCAGCAGCAGGATCGACAACACGCAAGGGGGGACGA
** * * *
20712495 GGCCGGTCCCCAGCTTGCCATTTTGCCTCTTCGACCAGTTGAGCACCCGTACGCTCGTTTCGTGG
456 GGCAAGTCCCCAGCTTGCCATTCTGCCTCTCCGACCAGCTGAGCACCCGTACGCTCGTTTCGTGG
20712560 GTTGGCTTACACATACAGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGAT
521 GTTGGCTTACACATACAGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGAT
* * * * ** *
20712625 CGGATCGGACTGAG-GATTGTGACAGTAGGACCAGTAGTAGGATCGACAGCACGCAGTGGGGGAT
586 CAGACCAGACTGAGAG-TTGTGACAGTAGGACCAGCAACAGGATCGACAGCACGCAGGGGGGGA-
* * ** * * **
20712689 TAG-GCTGATCATCGGTTTATGCATTCTGCCTCTCTTGCAGGCCTCTCCGGTCGACTGAGCAT
649 CAGAGCTGATCACCGACTTACGCATTCTGCCACTCCGGCAGGCCTCTCCGGTCGACTGAGCAT
* *
20712751 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT-CTGGAGTT-AT-CCCAGTCTAAGCATACGGA
1 CCGCACACTCGTTTCGTGGGTTGACTTAGGCATAC-GGAGTTCATCCCCAGTCTAAGCATACAGA
* * * *
20712813 GTTCATTCCTAGTCGAAGAAT-GAACC-GAATCGAGGGCTGTGACAGCAGGATCGACAGCATGCA
65 GTTCATTCCCAGTCGAAG-ATCGAACCTG-ACCGAGGGCTGCGACAGCAGGATCGACAGCACGCA
* * * *
20712876 GGGGGGACCGGGCCGATCGTCGGCTTGTGCATTCTACCTCTCCAGCCCGGTTGAGCTCTCACACA
128 AGGGGGACCGGGCCGATCGTCGGCTTGTGCATTCTACCTCTCC-GCCCGGCTGAGCGCCCACACA
* *
20712941 CCCGTTTCATGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCAAAGCCCCAGCC-GAAATGA
192 CCCGTTTCATGGGTTGGCTTAGCCATAGGGACTTCATTCAATGTCAAAGCCCCAGCCAG-AATGA
*** * *
20713005 GGGTTGTGGCAGTGGGATCGACAGCACACAGAGGGGGTCC-GAGCCGATCC-CTGGCTTGCGCAT
256 GGGTTGTGGCAGCAAGATCGACAGCACACAGAGGGGGACCAG-GCCAATCCTC-GGCTTGCGCAT
* ** * * *
20713068 TATGCCTCTCCGACCGGCTCAGTGCCCGAACGCTCATTTCATGGGTTGAGTTAGGCATACGGAGT
319 TATGCCTCTCCAACCGGCTCAGCACCAGAACGCTCATTTCATGGCTTGACTTAGGCATACGGAGT
* * * *
20713133 TCATTCCCAGTCTAAGATCAGACTTG-ACCAAGGGTTGCGGTAGCAGGATCGACAACACGC-AGG
384 TCATTCCCAGTCTAAGACCAGAC-CGAACCAAGGGTTGCAGCAGCAGGATCGACAACACGCAAGG
* ** * *
20713196 GGGGACCGA-GTAAGTCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGCT
448 GGGGA-CGAGGCAAGTCCCCAGCTTGC-CATTCTGCCTCTCCGACCAGCTGAGCACCCGTACGCT
* ** * *
20713260 CGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATA-GAGTTCATTCT
511 CGTTTCGTGGGTTGGCTTACACATACAGAGTTCATTCCATGTCTAAGCATA-AGGAGTTCATTCC
* **
20713324 CAGTCTAAGATCAGACCAGACTGAGAGTTGTGGCAGTAGGACCAGCAACAGGATCGGTAGCACGC
575 CAGTCTAAGATCAGACCAGACTGAGAGTTGTGACAGTAGGACCAGCAACAGGATCGACAGCACGC
* * * *
20713389 AGGGGGGGACCGAGCTGATCCCCGACTTGCGCATTCTGCCACTCCGGCCGGCCTCTCCGGTCGAC
640 AGGGGGGGACAGAGCTGATCACCGACTTACGCATTCTGCCACTCCGGCAGGCCTCTCCGGTCGAC
*
20713454 TGAGCAC
705 TGAGCAT
* * * * * * * * *
20713461 CCGTACTCCCTTTTAGTGGGTTGGCTTAAGCATAGGGAGTTCAT-TCCATGTCTAAGC
1 CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
20713518 CCCAGCCAGA
Statistics
Matches: 644, Mismatches: 107, Indels: 31
0.82 0.14 0.04
Matches are distributed among these distances:
708 1 0.00
709 129 0.20
710 461 0.72
711 45 0.07
712 8 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (711 bp):
CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAG
TTCATTCCCAGTCGAAGATCGAACCTGACCGAGGGCTGCGACAGCAGGATCGACAGCACGCAAGG
GGGACCGGGCCGATCGTCGGCTTGTGCATTCTACCTCTCCGCCCGGCTGAGCGCCCACACACCCG
TTTCATGGGTTGGCTTAGCCATAGGGACTTCATTCAATGTCAAAGCCCCAGCCAGAATGAGGGTT
GTGGCAGCAAGATCGACAGCACACAGAGGGGGACCAGGCCAATCCTCGGCTTGCGCATTATGCCT
CTCCAACCGGCTCAGCACCAGAACGCTCATTTCATGGCTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGACCAGACCGAACCAAGGGTTGCAGCAGCAGGATCGACAACACGCAAGGGGGGACGA
GGCAAGTCCCCAGCTTGCCATTCTGCCTCTCCGACCAGCTGAGCACCCGTACGCTCGTTTCGTGG
GTTGGCTTACACATACAGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGAT
CAGACCAGACTGAGAGTTGTGACAGTAGGACCAGCAACAGGATCGACAGCACGCAGGGGGGGACA
GAGCTGATCACCGACTTACGCATTCTGCCACTCCGGCAGGCCTCTCCGGTCGACTGAGCAT
Found at i:20714082 original size:170 final size:169
Alignment explanation
Indices: 20713726--20714174 Score: 521
Period size: 170 Copynumber: 2.6 Consensus size: 169
20713716 ATGCAGGAGA
* *
20713726 GGACCGGG-TCGAT-CCTCGGCTTGCGCATTCTGCCTCTCCGG-TCGGCTGAATGCCCACATGCT
1 GGACCGGGCT-GATCCCT-GGCTTGCGCATTCTGCCTCT-CGGATCGGCTGAGTGCCCGCATGCT
***
20713788 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATTGGATCGGACCGAGGG
63 CATTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCAAGTCTAAGACCAGATCGGACCGAGGG
*
20713853 TTACGGCAGCAAGACCAGCAGCTGGATCGACAGCACGCAGGGG
127 TTACGGCAGCAAGACCAGCAGCGGGATCGACAGCACGCAGGGG
* * * **
20713896 GGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCGGACCGGCTGAGTGCCCGCGCGCTCAT
1 GGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCGGATCGGCTGAGTGCCCGCATGCTCAT
* * * * *
20713961 TTCGTGGGTTAGCTTAGGCTTACGGAGTTCATTCCATGTCTAGGCCCCAG-T-GGACCGAGGGTT
66 TTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCAAGTCTAAG-ACCAGATCGGACCGAGGGTT
** * * ** *
20714024 GTGGCTGCAGGACTGGCAGCGGGATCGACAGCACGTAGAGGG
129 ACGGCAGCAAGACCAGCAGCGGGATCGACAGCACGCAG-GGG
* * * **
20714066 GGACCGGGCTGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGTATGCTTGT
1 GGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCGGATCGGCTGAGTGCCCGCATGCTCAT
* *
20714131 TTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
66 TTCATGGGTTG-CTTAGGCATACGGAGTTCATTCCAAGTCTAAG
20714175 CATACAGAGT
Statistics
Matches: 233, Mismatches: 40, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
169 46 0.20
170 183 0.79
171 4 0.02
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (169 bp):
GGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCGGATCGGCTGAGTGCCCGCATGCTCAT
TTCATGGGTTGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGACCAGATCGGACCGAGGGTTAC
GGCAGCAAGACCAGCAGCGGGATCGACAGCACGCAGGGG
Found at i:20714178 original size:26 final size:26
Alignment explanation
Indices: 20714148--20714252 Score: 174
Period size: 26 Copynumber: 4.0 Consensus size: 26
20714138 GTTGACTTAG
*
20714148 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20714174 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20714200 GCATACAGAGTTCATCCCCAGTCTAT
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20714226 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20714252 G
1 G
20714253 ATTGGACCGA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20714446 original size:26 final size:26
Alignment explanation
Indices: 20714396--20714448 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20714386 TTTGGCTTAG
*
20714396 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
20714422 GCATACGGAGTTTATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
20714448 G
1 G
20714449 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:20715503 original size:159 final size:158
Alignment explanation
Indices: 20715280--20715642 Score: 354
Period size: 158 Copynumber: 2.3 Consensus size: 158
20715270 CTGCACGCCT
** * * **** * **
20715280 ATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCGGACCTAGGG
1 ATTTCATGGGTTCACTTAGGCATACGAAGTTCATTCCATGTCTAAGATTGGA-CCGGACGGAGGG
* * *
20715344 TTATGGCAGCGGGACCGACAACACGTAGAGGGGGACCGGGTCGATCCTCTG-CTTGCGCATTATG
65 TTATGGCAGCAGGACCGACAACACGTAG-GGGGGACCGGGTCGATCC-CCGACTTGCGCATTATA
20715408 CCTCTCCAATCGACTCAACGCCCGTACGCTC
128 CCTCTCCAATCGACTCAACGCCCGTACGCTC
* *
20715439 GTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATTGGACCGGACGGAGGG
1 ATTTCATGGGTTCACTTAGGCATACGAAGTTCATT-CCATGTCTAAGATTGGACCGGACGGAGGG
* * * * * * * * *
20715503 TTGTGGTAGTAGGATCGATAGCACGTAGGGGGGATCGGGTCGGTCCCCGACTTGCGCATTCTACC
65 TTATGGCAGCAGGACCGACAACACGTAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTATACC
* * * ** *
20715568 TCTCCGATTGACTGAGTGCCCGTACGCTT
130 TCTCCAATCGACTCAACGCCCGTACGCTC
** **
20715597 ATTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
1 ATTTCATGGGTTCACTTAGGCATACGAAGTTCATTCCATGTCTAAG
20715643 CATACGGAGT
Statistics
Matches: 165, Mismatches: 35, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 5 0.03
158 88 0.53
159 68 0.41
160 4 0.02
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (158 bp):
ATTTCATGGGTTCACTTAGGCATACGAAGTTCATTCCATGTCTAAGATTGGACCGGACGGAGGGT
TATGGCAGCAGGACCGACAACACGTAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTATACCT
CTCCAATCGACTCAACGCCCGTACGCTC
Found at i:20715645 original size:26 final size:26
Alignment explanation
Indices: 20715616--20715694 Score: 117
Period size: 26 Copynumber: 3.0 Consensus size: 26
20715606 GTTGGCTTAG
20715616 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
*
20715642 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
20715668 GCATAC-AGAGTTCATT-CATAGTCTAA
1 GCATACGA-AGTTCATTCCAT-GTCTAA
20715694 G
1 G
20715695 ATCGAATCGG
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.06
26 46 0.94
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:20716058 original size:26 final size:26
Alignment explanation
Indices: 20716022--20716074 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20716012 GTTGACTTAG
20716022 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20716048 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20716074 G
1 G
20716075 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20716350 original size:159 final size:157
Alignment explanation
Indices: 20716048--20716551 Score: 477
Period size: 159 Copynumber: 3.2 Consensus size: 157
20716038 CCCAGTCTAA
* *
20716048 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACCGGACCGAGGGTTGTGGCAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGA-CGGACCGAGGGTTGTGGCAGT-GGATCGA
** * * * * *
20716111 CAGCACACA-AGGTGGATCGGGCCGATCCCTAGCTTGCGCATTTTGCCTCTTCGGCCGACTGAGC
63 CAGCACGTAGAGGGGGATCGGG-CGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGC
* *
20716175 TGCCCGCACGCCCATTTCGTGGGTTGGCTTAG
127 -GCCCGAACGCTCATTTCGTGGGTTGGCTTAG
* * * **
20716207 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATTGAGGGTTGTGGCAGTGGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACGGACCGAGGGTTGTGGCAGT-GGATCGACA
* * * *
20716272 GCACGTAGAGGGGGA-CTGGGTCGATCCCTGGCTTGGGCATTATGCCTCTCCGGCCGGTTTAGCA
65 GCACGTAGAGGGGGATC-GGG-CGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCG
* * *
20716336 CCCGAACGCTCATTTCATGGATTGACTTAG
128 CCCGAACGCTCATTTCGTGGGTTGGCTTAG
* *** * * *
20716366 GCATACGAAGTTCATTCCCA-GTCTAAG-ATTGGACGGACCAAAGGTTACGATGACA--GGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACGGACCGAGGGTT--G-TGGCAGTGGATCG
* * * * *
20716427 ACAGCACGTAG-GGGGGATCGGGCTGATCCCCGGTTTGTGCATTCTGCCTCTCCAGCCGGCTGAG
62 ACAGCACGTAGAGGGGGATCGGGC-GATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAG
* * * *
20716491 TGCCCGTACGCTCGTTTCGTGGGTTTGCTTAG
126 CGCCCGAACGCTCATTTCGTGGGTTGGCTTAG
20716523 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
20716552 TACGGAGTTC
Statistics
Matches: 280, Mismatches: 53, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
156 4 0.01
157 88 0.31
158 32 0.11
159 102 0.36
160 50 0.18
161 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACGGACCGAGGGTTGTGGCAGTGGATCGACAG
CACGTAGAGGGGGATCGGGCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCC
GAACGCTCATTTCGTGGGTTGGCTTAG
Found at i:20716502 original size:157 final size:158
Alignment explanation
Indices: 20716263--20716549 Score: 377
Period size: 157 Copynumber: 1.8 Consensus size: 158
20716253 TGTGGCAGTG
* *
20716263 GGATCGACAGCACGTAGAGGGGGACTGGGTCGATCCCTGGCTTGGGCATTATGCCTCTCCGGCCG
1 GGATCGACAGCACGTAGAGGGGGACTGGGTCGATCCCCGGCTTGGGCATTATGCCTCTCCAGCCG
* *
20716328 GTTTAGCACCCGAACGCTCATTTCAT-GGATTGACTTAGGCATACGAAGTTCATTCCCA-GTCTA
66 GCTGAGCACCCGAACGCTCATTTCATGGGATTG-CTTAGGCATACGAAGTTCATT-CCATGTCTA
20716391 AGATTGGACGGACCAAAGGTTACGATGACA
129 AGATTGGACGGACCAAAGGTTACGATGACA
* * *
20716421 GGATCGACAGCACGTAG-GGGGGA-TCGGG-CTGATCCCCGGTTTGTGCATTCTGCCTCTCCAGC
1 GGATCGACAGCACGTAGAGGGGGACT-GGGTC-GATCCCCGGCTTGGGCATTATGCCTCTCCAGC
** * * * * *
20716483 CGGCTGAGTGCCCGTACGCTCGTTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTA
64 CGGCTGAGCACCCGAACGCTCATTTCATGGGATTGCTTAGGCATACGAAGTTCATTCCATGTCTA
20716548 AG
129 AG
20716550 CATACGGAGT
Statistics
Matches: 111, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
156 5 0.05
157 84 0.76
158 22 0.20
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
GGATCGACAGCACGTAGAGGGGGACTGGGTCGATCCCCGGCTTGGGCATTATGCCTCTCCAGCCG
GCTGAGCACCCGAACGCTCATTTCATGGGATTGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
ATTGGACGGACCAAAGGTTACGATGACA
Found at i:20716552 original size:26 final size:26
Alignment explanation
Indices: 20716523--20716575 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20716513 GTTTGCTTAG
20716523 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTACCA-GTCTAA
20716549 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
20716575 G
1 G
20716576 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:20717406 original size:870 final size:864
Alignment explanation
Indices: 20715642--20718055 Score: 2586
Period size: 870 Copynumber: 2.7 Consensus size: 864
20715632 CCATGTCTAA
* * *
20715642 GCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCATAGTCTAAGATCGAATCGGAT
1 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC-CAGTCTAAGATCGAACCGGAT
* *
20715707 CGAGGGTTGCGGTAGCAGGACCAGTAGCAGGATCGACAGCATGCAGGGGGGACTAGGCCGATCCC
65 CGAGGGTTGCGGTAGCAGG--CAGTA-C-GG-T----AGCACGCAGGGGGGACTAGGCCGATCCT
* *
20715772 CGGCTTGCACATTCTGCCTCTCCGATCGACTGAGCGTCCGTACGCTCGTTTCATGGGTTGGCTTA
121 CGGCTTGCACATTCTGCCTCTCCGACCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTA
** * * **
20715837 GGCATACGGAGTTCATTGTATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCAGGACCGGT
186 GGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGCA
* * * **
20715902 AGTGGAATCGGCAGCACGCAGAGGGGGGCTGGGCTGATCCTCAGCTTGTGCATTATGCCTCTCCG
251 ACTGG-ATCGGCAGCACGCAGAGGGGGACCGGGCTGATCC-CAGCTTACGCATTATGCCTCTCCG
* * * * *
20715967 ACCGGCCTCTC-TGGCCGACTGAGCGCCCGTAAGCTCGTTTCGCGGGTTGACTTAGGCATACGGA
314 GCTGGCCTCTCGTGG-C--CTAAACGCCCGTAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
*
20716031 GTTCATCCCCAGTCTAAGCATAC-GGAGTTCATTCCCAGTCTAAGATCGGAC-CGGACCGAGGGT
376 GTTCATCCCC-GTCTAAGCATACGGGAGTTCATTCCCAGTCTAAGATCGAACTCGGACCGAGGG-
* * * * * *
20716094 TGTGGCAGTAGGATCGACAGCACACAAGGTGGATCGGGCCGATCCCTAGCTTGCGCATTTTGCCT
439 TG-CGCAGTAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCC-GGCTTGCGCATTCTGCCT
* * *
20716159 CTTCGGCCGACTGAGCTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTC
502 CTTCGGCTGGCTGAGC-GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTC
* * * * *
20716224 CATGTCTAAGCCCC-AGTCGGATTGAGGGTTGTGGCAGTGGGATCGACAGCACGTAGAGGGGGAC
566 CATGTCTAAGCCCCAACT-GGATCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGAC
** * * * * * *
20716288 TGGGTCGATCCCTGGCTTGGGCATTATGCCTCTCCGGCCGGTTTAGCACCCGAACGCTCATTTCA
630 CAGGTCAATCCCCGGCTTGGGCATTATGCCTCTCCGACCAGCTCAGCACCCGAACGCTCATTTCA
* **
20716353 TGGATTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACGGACCAAAGGTTACGATG
695 TGGATTGACTAAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACGGACCAAAGGTTACGATG
* ** ** ** *
20716418 ACAGGATCGACAGCACGTAGGGGGGATCGGGCTGATCCCCGGTTTGTGCATTCTGCCTCTCCAGC
760 ACAGAATCGACAGCACACAGGGGGGATCGGGCTGATCCCCGACTTGCACATTCTGCCTCTCCACC
* **
20716483 CGGCTGAGTGCCCGTACGCTCGTTTCGTGGGTTTGCTTAG
825 CGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTTGCTTAG
20716523 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTACCAGTCTAAGATCGAACCGGAT
1 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGAACCGGAT
* * * * * *
20716588 CGAGGGTTGCGGTAGCAGG-A-T-CGGTAGCACGCAGGAGAGACCAAGCCGATCCTTGGCTTGCG
65 CGAGGGTTGCGGTAGCAGGCAGTACGGTAGCACGCAGGGGGGACTAGGCCGATCCTCGGCTTGCA
* * * * ** *
20716650 CATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGA
130 CATTCTGCCTCTCCGACCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
*
20716715 AGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGGTGTGGCAGCAGGACCGACAACTGGATC
195 AGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCG-CAACTGGATC
* * * * * * * *
20716780 GGTAGCACGTAAAGGGGGATCGGGCTGATCTCCGGCTTACGCATTATGCCTCTCTGGCTGACCTT
259 GGCAGCACGCAGAGGGGGACCGGGCTGATC-CCAGCTTACGCATTATGCCTCTCCGGCTGGCCTC
* * * * *
20716845 TCCAGTTGGCCTAAACCGGCCTGTATGCTCCTTTCATGGGTTGGACTTAGGCATATGGAGTTCAT
323 T-C-G-TGGCCTAAA-C-GCCCGTAAGCTCGTTTCGTGGGTT-GACTTAGGCATACGGAGTTCAT
* ***
20716910 CCCCGT-TAAGCATACGGGAGTTCATTCCTAGTCTAATGATC-AACTCGGATTAAGGGTGCGCAG
382 CCCCGTCTAAGCATACGGGAGTTCATTCCCAGTCTAA-GATCGAACTCGGACCGAGGGTGCGCAG
* * * *
20716973 TAGGATCGACAGTACGCAGGGGGGATCGTGCCGTTCTCCGGCTTACGCATTCTGCCTCTTCGGCT
446 TAGGATCGACAGCACGCAGGGGGGATCGGGCCGATC-CCGGCTTGCGCATTCTGCCTCTTCGGCT
** * * * *
20717038 GGCTGAGCAACTGCACGCCCGTTTCATGGGTTGGCTGAGGCATAGGGAGTTTATTCCATGTCTAA
510 GGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * * *
20717103 ACCCCAACTGGACCGAGGGTTGGGGCAGCGGGATCGGTAGCACGCAGAGAGGGACCAGGTCAATC
575 GCCCCAACTGGATCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGACCAGGTCAATC
* * ** * * *
20717168 CCCGGCTTGTGCATTATGCCTCTCCGATCAGCTCAGTGCCCGAATGCTCATTTCGTGGGTTGACT
640 CCCGGCTTGGGCATTATGCCTCTCCGACCAGCTCAGCACCCGAACGCTCATTTCATGGATTGACT
* * * * * * *
20717233 AAGGCATGC-AAGTTCATTCCTAGTCTAAGATCAGATTGGATC-GAGCGTTGCGAT-AGTAGAAT
705 AAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-CGGACCAAAG-GTTACGATGA-CAGAAT
*
20717295 CGACAGCACACAGGGGGGA-CTGGG-TCGGTCCCCGACTTGCACATTCTGCCTCTCCACCCGGCT
767 CGACAGCACACAGGGGGGATC-GGGCT-GATCCCCGACTTGCACATTCTGCCTCTCCACCCGGCT
20717358 GAGCGCCCACACGCTCGTTTCGTGGG-TTGACTTAG
830 GAGCGCCCACACGCTCGTTTCGTGGGTTTG-CTTAG
* * * *
20717393 GCATACTGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAACATCGAACCAGAT
1 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGAACCGGAT
* * * *
20717458 CGAGGGTTGCGGTAGCAGGACCAGCAGTAAGAACGGCAGCACGCAGGGGGGATTGGGCCAATCCT
65 CGAGGGTTGCGGTAGCA-G----GCAGT----ACGGTAGCACGCAGGGGGGACTAGGCCGATCCT
* * * * *
20717523 CGGCTTGCACATTCTACCTCTCCGACCGACTGAGCACCCATACGCTCATTTCCTGGGTTGGCTTA
121 CGGCTTGCACATTCTGCCTCTCCGACCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTA
* * * *
20717588 GGCATACGGAGTTCATTCCATGTCTAAGCCTTCA-CCGGACCAAGGGTTGTGGTAGCAAGACCGG
186 GGCATACGGAGTTCATTCCATGTCTAAGCC-CCAGCCGGACCGAGGGTTGTGGCAGCAGGACC-G
* * * * * ** *
20717652 CAGCGGGATCGGCAGCATGCAGAGGGAGACCAGGCTGATCCCTAGCTTACATATGATGCCTCTCC
249 CAACTGGATCGGCAGCACGCAGAGGGGGACCGGGCTGATCCC-AGCTTACGCATTATGCCTCTCC
* * * * *
20717717 GG-TCGGCCTCTC-TGGCCGACTGAATGCCCGTACGCTCGTTTCGTGGGTTGAGTTAGGCATACA
313 GGCT-GGCCTCTCGTGG-C--CTAAACGCCCGTAAGCTCGTTTCGTGGGTTGACTTAGGCATACG
*
20717780 GAGTTCATCCCCGCTCTAAGCATACGGG-GTTCATTCCCAGTCTAAGATCGAA-TCAGACCGAGG
374 GAGTTCATCCCCG-TCTAAGCATACGGGAGTTCATTCCCAGTCTAAGATCGAACTCGGACCGAGG
* * * * * * * * *
20717843 ATTGCGACTGTAGCATCGTCTGCATGCAGGGGGGA-CGGGGTCGATCCCCGGCTTGTGCATTCTA
438 -GTGCG-CAGTAGGATCGACAGCACGCAGGGGGGATC-GGGCCGAT-CCCGGCTTGCGCATTCTG
*
20717907 CCTCTCCGG-TAGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
499 CCTCTTCGGCT-GGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
* * ** * *
20717971 TTCAATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCGGGATCGGCAACACCCAGAGGGGG
563 TTCCATGTCTAAGCCCCAACTGGATCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGG
* * *
20718036 ACCAGGCCTATCCTCGGCTT
628 ACCAGGTCAATCCCCGGCTT
20718056 ACGCTTTCTG
Statistics
Matches: 1269, Mismatches: 216, Indels: 97
0.80 0.14 0.06
Matches are distributed among these distances:
869 218 0.17
870 339 0.27
871 76 0.06
872 47 0.04
873 41 0.03
874 2 0.00
875 2 0.00
876 1 0.00
877 2 0.00
878 39 0.03
879 46 0.04
880 179 0.14
881 88 0.07
882 186 0.15
883 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (864 bp):
GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGAACCGGATC
GAGGGTTGCGGTAGCAGGCAGTACGGTAGCACGCAGGGGGGACTAGGCCGATCCTCGGCTTGCAC
ATTCTGCCTCTCCGACCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGCAACTGGATCGG
CAGCACGCAGAGGGGGACCGGGCTGATCCCAGCTTACGCATTATGCCTCTCCGGCTGGCCTCTCG
TGGCCTAAACGCCCGTAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCGTCTA
AGCATACGGGAGTTCATTCCCAGTCTAAGATCGAACTCGGACCGAGGGTGCGCAGTAGGATCGAC
AGCACGCAGGGGGGATCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCGCC
CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTGG
ATCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGACCAGGTCAATCCCCGGCTTGGG
CATTATGCCTCTCCGACCAGCTCAGCACCCGAACGCTCATTTCATGGATTGACTAAGGCATACGA
AGTTCATTCCCAGTCTAAGATCAGACGGACCAAAGGTTACGATGACAGAATCGACAGCACACAGG
GGGGATCGGGCTGATCCCCGACTTGCACATTCTGCCTCTCCACCCGGCTGAGCGCCCACACGCTC
GTTTCGTGGGTTTGCTTAG
Found at i:20718869 original size:26 final size:26
Alignment explanation
Indices: 20718840--20718892 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20718830 GTTGACTTAG
20718840 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20718866 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20718892 G
1 G
20718893 ATCAAACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20719398 original size:159 final size:158
Alignment explanation
Indices: 20718866--20719870 Score: 591
Period size: 159 Copynumber: 6.2 Consensus size: 158
20718856 CCCAGTCTAA
* * * *
20718866 GCATATGGAGTTCATTCCCAGTCTAAGATCAAACCAAATCGAGGGTTACGGCAGCAGGATCGGCA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTTCGGCAGCAGGATCGGCA
* * * *
20718931 GCACGC-AGGAGGGATCGGGCCAATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGC
66 GCACGCAAGG-GGGATCGGGTCAGTCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGC
* *
20718995 CTGTACGC-CTGTTTCATGGGTTGGCTTAG
130 CCGTACGCTC-GTTTCGTGGGTTGGCTTAG
* * * * ** * *
20719024 GCATAGGGAGTTCATT-TCATGTCTAAG-CCGGAGCTGGACGGAGGGTTGT-GGCAGCGGGA-CT
1 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGA-CCAGACCGAGGGTT-TCGGCAGCAGGATC-
* * * * * *
20719085 GGTAGCACGCAGAGGGGGATCGGGTC-GATCCGCGGCTTGCGCATTATACCTTTCCGGCCAGCTC
62 GGCAGCACGCA-AGGGGGATCGGGTCAG-TCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTG
* * *
20719149 AGTGCCCGTACGCTCGTTTTGTGGGTTGACTTAG
125 AGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * * * * * *
20719183 GCATACGAAGTTCATTCCCAATCTAATATCTGACTAGACCAAGGATTCCGGTAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTTCGGCAGCAGGATCGGCA
** * *
20719248 GCACGCATAGGGGGA-CTGGGTCAGTCCCCAACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCA
66 GCACGCA-AGGGGGATC-GGGTCAGTCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCG
* * **
20719312 CCCGCATGCTCGTTTCGTGGACTGGCTTAG
129 CCCGTACGCTCGTTTCGTGGGTTGGCTTAG
*
20719342 GCATATAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTC-GCAGCAGGACTAGC
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-TCGGCAGCAGGA-T--C
* * * ** * * *
20719406 AGCAGGATGGGCAGCATGCAGAGGGGAACCAGACCGATCCCTGGCTTGCGCATTCTGCCTCTCCG
62 GGCAGCA----C-GCA---AG-GGGGATCGGGTCAG-TCCCCGGCTTGCGCATTCTGCCTCTCC-
** * * * *
20719471 ATAGGCCTCTCTGGCCGACTAAGCATCCGTATGCTCGTTTCGTGGGTTGACTTAA
116 ---GGCC-AGCT-G-AG-C---GC--CCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * * * *
20719526 GCATACGAAGTTCATTCCTAGTCTAAGATCAAACCAGATCGAGGGTTGCGGTAGCAGGACCGGTA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTTCGGCAGCAGGATCGGCA
* * * * * * * * * *
20719591 GCACACAGGGGGGAACGGG-CCGATCCCCGGCTTACGCATTCTGCCTTTTCGACCGGCTGAGTGC
66 GCACGCAAGGGGGATCGGGTCAG-TCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGC
* *
20719655 CCGTAAGCCCGTTTCGTGGGTTGGCTTAG
130 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * *
20719684 GCATAGGGAGTTCATT-CCATGTCTAAGCCCAAACC-GAACCGAGGGTTGT-GGCAGCAAGACCA
1 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGACCAG-ACCGAGGGTT-TCGGCAGCAGGATCG
* * * * * *
20719746 ACAGCACGCAGAGGGGGACCGTG-CTGATCCCCGGCTTGCCCATTCTGCCTCTCCGGTC-GACTG
63 GCAGCACGCA-AGGGGGATCGGGTCAG-TCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAG-CTG
* ** * *
20719809 AGAGCCCACACGCTCATTTCATGGGTTGGCTTAG
125 AGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* *
20719843 GCATACGGAGTTTATTCCCAGTCTAAGA
1 GCATATGGAGTTCATTCCCAGTCTAAGA
20719871 GTTTGAGCCA
Statistics
Matches: 645, Mismatches: 154, Indels: 95
0.72 0.17 0.11
Matches are distributed among these distances:
157 8 0.01
158 129 0.20
159 312 0.48
160 18 0.03
162 5 0.01
164 1 0.00
165 1 0.00
166 3 0.00
167 6 0.01
169 2 0.00
170 8 0.01
171 52 0.08
172 8 0.01
173 1 0.00
175 3 0.00
176 4 0.01
177 2 0.00
178 1 0.00
179 1 0.00
181 5 0.01
182 1 0.00
183 1 0.00
184 73 0.11
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTTCGGCAGCAGGATCGGCA
GCACGCAAGGGGGATCGGGTCAGTCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCC
CGTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20721020 original size:26 final size:26
Alignment explanation
Indices: 20720981--20721032 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20720971 GTTGGCTTAG
*
20720981 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAATTCATTCCCA-GTCTAA
20721007 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
20721033 AATCGGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:20721395 original size:25 final size:26
Alignment explanation
Indices: 20721361--20721412 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
20721351 GTTGACTTAG
*
20721361 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
20721386 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
20721412 G
1 G
20721413 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:20721876 original size:26 final size:26
Alignment explanation
Indices: 20721839--20721891 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
20721829 GTTGGCTTAG
20721839 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
20721865 GCATACTG-AGTTCATTCCCAGTCTAA
1 GCATAC-GAAGTTCATTCCCAGTCTAA
20721891 G
1 G
20721892 ATCCGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20722245 original size:157 final size:158
Alignment explanation
Indices: 20721941--20722245 Score: 344
Period size: 157 Copynumber: 1.9 Consensus size: 158
20721931 CAGGATCGGT
* * * * * ** *
20721941 AGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTTTCCGGTCAGTTGAACGC
1 AGCACGCAGGGGGGAACAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCAGCTGAACGC
* ** * *
20722006 CTGCATGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCTAACCA
66 CTGCATGCCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCCAACCA
* * *
20722071 GACTGAGTGTTACGGCAGCAAGATCAAC
131 GACCGAGGGCTACGGCAGCAAGATCAAC
* * **
20722099 AGCACGCA-GGGGGAACAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGTGC
1 AGCACGCAGGGGGGAACAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCAGCTGAACGC
* ** * **
20722163 CTGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTC
66 CTGCATGCCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGACCCAACC
*
20722227 AGACCGAGGGCTATGGCAG
130 AGACCGAGGGCTACGGCAG
20722246 GGGGTCCGAC
Statistics
Matches: 119, Mismatches: 27, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
156 3 0.03
157 108 0.91
158 8 0.07
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
AGCACGCAGGGGGGAACAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCAGCTGAACGC
CTGCATGCCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCCAACCA
GACCGAGGGCTACGGCAGCAAGATCAAC
Found at i:20723088 original size:26 final size:26
Alignment explanation
Indices: 20723036--20723088 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20723026 GTTGGCTTAG
* *
20723036 GCATACGGAGGTCATTCCATGTGTAA
1 GCATACGAAGGTCATTCCATGTCTAA
*
20723062 GCATACGAAGTTCATTCCCA-GTCTAA
1 GCATACGAAGGTCATT-CCATGTCTAA
20723088 G
1 G
20723089 ATCATATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGAAGGTCATTCCATGTCTAA
Found at i:20723455 original size:157 final size:158
Alignment explanation
Indices: 20723168--20723504 Score: 381
Period size: 157 Copynumber: 2.1 Consensus size: 158
20723158 CGATCCCGGA
* * * * * * **
20723168 CTTGCGCATTTGCCTCTTCGGCCGACTGAGTGCCCGTACGCTCGTTTCGTTTGTTAGCTTAGGCA
1 CTTGCGCATTTGCCTCTCCGACCGACTGAGTGCCCGCACGCCCATTTCATGGGTTAGCTTAGGCA
* * * *
20723233 TAGGGAGTTCATTCCATGTCTAAGCGCCAGTCGAACCAACGGTTGTGGCAACGGGACCGGTAGCA
66 TAGGGAGTTCA-TACATATCTAAGCCCCAGTCGAACCAACGGTTGTGGCAACGGGACCGGCAGCA
*
20723298 CACAGAGGAGGACCGGGCCAATCCCCA-G
130 CACAAAGGAGGACCGGGCCAATCCCCAGG
** *
20723326 CTTGCGCATTCTGCCTCTCCGACCGGTTGAGTGCCCGCACGCCCATTTCATGGGTTGGCTTAGGC
1 CTTGCGCATT-TGCCTCTCCGACCGACTGAGTGCCCGCACGCCCATTTCATGGGTTAGCTTAGGC
* * * * *
20723391 ATAGTGAGTTCA-ACATATCTAAGCCCCAGTCGAACCGAGGGTTGTGGCAGCTGGACCGGCAGCA
65 ATAGGGAGTTCATACATATCTAAGCCCCAGTCGAACCAACGGTTGTGGCAACGGGACCGGCAGCA
* * ** * *
20723455 CGCAAAGGGGGATTGGGCCGATCCCGAGG
130 CACAAAGGAGGACCGGGCCAATCCCCAGG
*
20723484 CTTACGCATTATGCCTCTCCG
1 CTTGCGCATT-TGCCTCTCCG
20723505 GTCGGCTCAG
Statistics
Matches: 148, Mismatches: 29, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
157 64 0.43
158 30 0.20
159 54 0.36
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (158 bp):
CTTGCGCATTTGCCTCTCCGACCGACTGAGTGCCCGCACGCCCATTTCATGGGTTAGCTTAGGCA
TAGGGAGTTCATACATATCTAAGCCCCAGTCGAACCAACGGTTGTGGCAACGGGACCGGCAGCAC
ACAAAGGAGGACCGGGCCAATCCCCAGG
Found at i:20724413 original size:26 final size:26
Alignment explanation
Indices: 20724363--20724415 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20724353 GTTGGGTTAG
*
20724363 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
20724389 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
20724415 G
1 G
20724416 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:20724468 original size:12 final size:12
Alignment explanation
Indices: 20724453--20724492 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
20724443 TAGGACCAGC
20724453 AGCAGGATCAGT
1 AGCAGGATCAGT
* *
20724465 AGCAGGACCAGC
1 AGCAGGATCAGT
*
20724477 AGTAGGATCAGT
1 AGCAGGATCAGT
20724489 AGCA
1 AGCA
20724493 AGACCAGCAG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.35, C:0.20, G:0.33, T:0.12
Consensus pattern (12 bp):
AGCAGGATCAGT
Found at i:20724473 original size:24 final size:24
Alignment explanation
Indices: 20724444--20724510 Score: 116
Period size: 24 Copynumber: 2.8 Consensus size: 24
20724434 TTGCGACAGT
*
20724444 AGGACCAGCAGCAGGATCAGTAGC
1 AGGACCAGCAGTAGGATCAGTAGC
20724468 AGGACCAGCAGTAGGATCAGTAGC
1 AGGACCAGCAGTAGGATCAGTAGC
*
20724492 AAGACCAGCAGTAGGATCA
1 AGGACCAGCAGTAGGATCA
20724511 ACAGCATGCA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.36, C:0.22, G:0.31, T:0.10
Consensus pattern (24 bp):
AGGACCAGCAGTAGGATCAGTAGC
Found at i:20725208 original size:26 final size:26
Alignment explanation
Indices: 20725178--20725230 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20725168 GTTGACTTAG
20725178 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20725204 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20725230 G
1 G
20725231 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20725398 original size:26 final size:26
Alignment explanation
Indices: 20725362--20725414 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20725352 GTTGGCTTAG
*
20725362 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20725388 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20725414 G
1 G
20725415 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20726570 original size:158 final size:159
Alignment explanation
Indices: 20726183--20726596 Score: 424
Period size: 159 Copynumber: 2.6 Consensus size: 159
20726173 GATCGAGCCA
* * * * * *
20726183 ATCCCCTACTTATGCATTCTGCCACTCCGATCGGCTGAGCGCCCGCACACCCGTTTCGTGGGTTG
1 ATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * ** * **
20726248 GCTTTGGCATAGGGAGTTCATT-CAATGTCTAAGCCCCAGGTGGACCGAGGGTTGTGGTAGAGGG
66 ACTTAGGCATACAGAGTTCATTCCAA-GTCTAAGCACCAGCCGGACCGAGGGTTGTGGTAGAGGG
*
20726312 ATCGATAGCACGCAGAGGGGGACCAGGCCG
130 ATCGACAGCACGCAGAGGGGGACCAGGCCG
* ** * * * * * *
20726342 ATCCCCGGCTTGCACATTATGCCTCTTCGGTCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTG
1 ATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
** *
20726407 ACTTAGGCATACAGAGTTCATTCCCAA-TCTAAG-ATTAGACCGGACCGAGGGTTGTGGTGGCA-
66 ACTTAGGCATACAGAGTTCATT-CCAAGTCTAAGCACCAG-CCGGACCGAGGGTTGTGGTAG-AG
* * * *
20726469 GGATGGGCAGCACGCAG-GGGGGACCGGGTCG
128 GGATCGACAGCACGCAGAGGGGGACCAGGCCG
* *
20726500 ATCCCCGACTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTG
1 ATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * * * *
20726565 CCTTAGGCATTCAAAGTTCATTCTATGTCTAA
66 ACTTAGGCATACAGAGTTCATTCCAAGTCTAA
20726597 TCCGCTGTCG
Statistics
Matches: 204, Mismatches: 46, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
157 2 0.01
158 92 0.45
159 106 0.52
160 1 0.00
161 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
ATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
ACTTAGGCATACAGAGTTCATTCCAAGTCTAAGCACCAGCCGGACCGAGGGTTGTGGTAGAGGGA
TCGACAGCACGCAGAGGGGGACCAGGCCG
Found at i:20726628 original size:158 final size:158
Alignment explanation
Indices: 20726183--20726637 Score: 429
Period size: 158 Copynumber: 2.9 Consensus size: 158
20726173 GATCGAGCCA
* * * * * *
20726183 ATCCCCTACTTATGCATTCTGCCACTCCGATCGGCTGAGCGCCCGCACACCCGTTTCGTGGGTTG
1 ATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * ** * *
20726248 GCTTTGGCATAGGGAGTTCATTCAATGTCTAAGCCCCAGGT-GGACCGAGGGTTGTGGTAG-AGG
66 ACTTAGGCATACAGAGTTCATTCAATGTCTAA-CCGC-TGTCGGACCGAGGGTTGTGGTAGCA-G
**
20726311 GATCGATAGCACGCAGAGGGGGACCAGGCCG
128 GATCGGCAGCACGCAGAGGGGGACCAGGCCG
* ** * * * * * *
20726342 ATCCCCGGCTTGCACATTATGCCTCTTCGGTCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTG
1 ATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * *
20726407 ACTTAGGCATACAGAGTTCATTCCCAA--TCTAA--GATTAGACCGGACCGAGGGTTGTGGTGGC
66 ACTTAGGCATACAGAGTTCATT--CAATGTCTAACCG-CT-G-TCGGACCGAGGGTTGTGGTAGC
* * *
20726468 AGGATGGGCAGCACGCAG-GGGGGACCGGGTCG
126 AGGATCGGCAGCACGCAGAGGGGGACCAGGCCG
* *
20726500 ATCCCCGACTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTG
1 ATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * * * * * * *
20726565 CCTTAGGCATTCAAAGTTCATTCTATGTCTAATCCGCTGTCGGAGCGAGGGTTATAGCAGCAGGA
66 ACTTAGGCATACAGAGTTCATTCAATGTCTAA-CCGCTGTCGGACCGAGGGTTGTGGTAGCAGGA
20726630 TCGGCAGC
130 TCGGCAGC
20726638 GGGATCGGTA
Statistics
Matches: 232, Mismatches: 52, Indels: 25
0.75 0.17 0.08
Matches are distributed among these distances:
156 2 0.01
157 1 0.00
158 117 0.50
159 106 0.46
160 2 0.01
161 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
ATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
ACTTAGGCATACAGAGTTCATTCAATGTCTAACCGCTGTCGGACCGAGGGTTGTGGTAGCAGGAT
CGGCAGCACGCAGAGGGGGACCAGGCCG
Found at i:20726791 original size:26 final size:26
Alignment explanation
Indices: 20726755--20726807 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20726745 GTTGACTTAG
*
20726755 GCATGCGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
20726781 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
20726807 G
1 G
20726808 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:20728174 original size:26 final size:26
Alignment explanation
Indices: 20728138--20728188 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20728128 TTGACTTAGG
20728138 CATACAAAGTTCATCCCCAATCTAAC
1 CATACAAAGTTCATCCCCAATCTAAC
* * *
20728164 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAAAGTTCATCCCCAATCTAA
20728189 GATCAGACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.35, C:0.31, G:0.08, T:0.25
Consensus pattern (26 bp):
CATACAAAGTTCATCCCCAATCTAAC
Found at i:20728176 original size:881 final size:881
Alignment explanation
Indices: 20726487--20728193 Score: 1953
Period size: 881 Copynumber: 1.9 Consensus size: 881
20726477 AGCACGCAGG
* * *
20726487 GGGGACCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCTGCACGCTC
1 GGGGACCAGGTCGATCCCCGACTTGTGCATTCTGCCCCTCCGACCGGCTGAGCGCCCGCACGCTC
** * * * * *
20726552 GTTTCATGGGTTGCCTTAGGCATTCAAAGTTCATTCTATGTCTAATCCGCTGTCGGAGCGAGGGT
66 GTTTCATGGGTTAACTTAGGCATTCAAAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGT
* * * ** * * *
20726617 TATAGCAGCAGGATCGGCAGCGGGATCGGTAGCACATAGAGGGGGACCGGGCTGATCCCAGGCTT
131 TATAGCAGCAGGACCAGCAACGGGATCGACAGCACACAGAGGGGGACCAGGCTAATCCCAGGCTT
* * * * ** *
20726682 GCGCATTATGGCTCTCCGATCGGCCCCTCTGACTGGCTGAGCTACCGCACGCTCGTTTCGTGGGT
196 ACGCATTATGCCTCTCCGATCGACCCCTCCGACCAGCTGAGCTACCGCACGCTCGTTTCATGGGT
* * *
20726747 TGACTTAGGCATGCGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
261 TGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCG
* * * * * *
20726812 GACCGAATCGAAGGTCATGGTTGTAGGATCGGCAGCACGCAGGGAAGATCGAGCCGATCACTGGC
326 GACAGAACCGAAGGTCACGGTAGTAAGATCGACAGCACGCAGGGAAGATCGAGCCGATCACTGGC
* ** * * **
20726877 TTACGCATTCTATGTCTCCGGCCGGTGGAGCGCCTCTACGCCCGTTTTGTGGGTTGGCTTAGGCA
391 TTACACATTCTACCTCTCCGGCCGGTGGAGCACCTCCACGCCCGTTTCATGGGTTGGCTTAGGCA
* * *
20726942 GGGGGAGTTCATTCCGTGTCTATGCCCCAGTCAGACCGAGGGTTGTGGCAGCGAGACTAACAGCA
456 GAGGGAGTTCATTCCGTGTCTAAGCCCCAGTCAGACCAAGGGTTGTGGCAGCGAGACTAACAGCA
* * * * * * * * * *
20727007 CGTAAAACTGGATCGGGCTGATCCTCGGCTTTATCATTATGCCTCTCTGACTGGCTCAGCGTCTG
521 CGCAAAACGGGACCGGGCTGATCCCCAGCTTCATCATTATGCCTCTCTGACCGGCTCAACGCCCG
* * * * *
20727072 TACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
586 AACGCTCAATTCATGGGTTGACTTAGGCATACGGAGGTCATTCCCAGTCTAAGAGCGGACCAGAC
* * * * * *
20727137 TGAGAGTTATGGTAGTAGGATCGATAACACGCAGGCGGGATCGCACCGATCCTCGGCTTGTGCAT
651 CGAGAGTTACGGCAATAGGATCGATAACACGCAGGCGGGATCGCACCGATCCCCGGCTTCTGCAT
* * * * **
20727202 TCTGCCTCTTCAGTCGACTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGTAGT
716 TCTGCCTCTCCAATCGACTGAACACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAAAGT
* * ** **
20727267 TCATTCCATGTCTAAGTATATGGAGTTCATTCCCAATCTAAGATCAAACCGAACCGAGGGTTGCA
781 TCATCCCATATCTAACCATACAGAGTTCATTCCCAATCTAAGATCAAACCGAACCGAGGGTTGCA
20727332 ATAGCAAGACCAGTAGCAGGATCGACAACACGCCAT
846 ATAGCAAGACCAGTAGCAGGATCGACAACACGCCAT
* * * * * *
20727368 GGGGACCAGGTCGATCCCTGGCTTGTGCATTCTGCCCCTCC-AGTCGGTTGAGCGCCCGTATGCT
1 GGGGACCAGGTCGATCCCCGACTTGTGCATTCTGCCCCTCCGA-CCGGCTGAGCGCCCGCACGCT
* * **
20727432 CGTTTCGTGGGTTAACTTAGGTATAT-GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGG
65 CGTTTCATGGGTTAACTTAGGCAT-TCAAAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGG
* * * * *
20727496 GTTGTGGCAGCAGGACCAGCAACGGGATTGACAGCACGCAGAGGGGGACCAGGCTAATCCCTGGC
129 GTTATAGCAGCAGGACCAGCAACGGGATCGACAGCACACAGAGGGGGACCAGGCTAATCCCAGGC
* * * ** * *
20727561 TTACGTATTATGCCTCTTCG-GCTGACCTTTCCGGCCAGCTGAGC-CCTCGCACGCTCGTTTCAT
194 TTACGCATTATGCCTCTCCGATC-GACCCCTCCGACCAGCTGAGCTAC-CGCACGCTCGTTTCAT
* * * *
20727624 TGGTTGACTTAGGCATACAGAGTTGATCCCTATTCTAAGCATACGGAGTTCATTCCCAATCTAAG
257 GGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAG
* * * ** **
20727689 ATTGGACAGGACCGAGGGTTGCGGTAGTAAGATCGACAGCACGCAGGGGGGATCGAGCCGATCCA
322 ATCGGACAGAACCGAAGGTCACGGTAGTAAGATCGACAGCACGCAGGGAAGATCGAGCCGAT-CA
* * * *
20727754 C-GGCTTGCACATTCTACCTCTCCGGTCGGTTGAGCACC-CACACGTCCGTTTCATGGGTTGGCT
386 CTGGCTTACACATTCTACCTCTCCGGCCGGTGGAGCACCTC-CACGCCCGTTTCATGGGTTGGCT
* * * *
20727817 TAGGCATAGGTAGTTCATT-CGATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGCGGGA-T
450 TAGGCAGAGGGAGTTCATTCCG-TGTCTAAGCCCCAGTCAGACCAAGGGTTGTGGCAGCGAGACT
* * ** * * *
20727880 CGACAGCACGCAGAGGGGGACCGGGTTGATCCCCAGCTTGCGT-ATTATGCCTCTCTGGCCGGCT
514 -AACAGCACGCAAAACGGGACCGGGCTGATCCCCAGCTT-CATCATTATGCCTCTCTGACCGGCT
* * *
20727944 CAATGCCCGAACGGTCAATTCATGGGTTGGCTTAGGCATACGGAGGTCATTCCCAGTCTAAGAGC
577 CAACGCCCGAACGCTCAATTCATGGGTTGACTTAGGCATACGGAGGTCATTCCCAGTCTAAGAGC
* * * ** * * *
20728009 GGATCAGACCGAGGGTTGCGGCAATAGGATCGATAGGACGCAGGGGGGATC-CAGTCGGTCCCCG
642 GGACCAGACCGAGAGTTACGGCAATAGGATCGATAACACGCAGGCGGGATCGCA-CCGATCCCCG
* ** *
20728073 GCTTACT-CATTCTGCCTCTCCAATCGATTGAACACCCGCACGTTCGTTTTGTGGGTTGACTTAG
706 GCTT-CTGCATTCTGCCTCTCCAATCGACTGAACACCCGCACACTCGTTTCGTGGGTTGACTTAG
*
20728137 GCATACAAAGTTCATCCCCA-ATCTAACCATACAGAGTTCATTCCCAGTCTAAGATCA
770 GCATACAAAGTTCAT-CCCATATCTAACCATACAGAGTTCATTCCCAATCTAAGATCA
20728194 GACCAGACTA
Statistics
Matches: 673, Mismatches: 141, Indels: 24
0.80 0.17 0.03
Matches are distributed among these distances:
880 9 0.01
881 655 0.97
882 9 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (881 bp):
GGGGACCAGGTCGATCCCCGACTTGTGCATTCTGCCCCTCCGACCGGCTGAGCGCCCGCACGCTC
GTTTCATGGGTTAACTTAGGCATTCAAAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGT
TATAGCAGCAGGACCAGCAACGGGATCGACAGCACACAGAGGGGGACCAGGCTAATCCCAGGCTT
ACGCATTATGCCTCTCCGATCGACCCCTCCGACCAGCTGAGCTACCGCACGCTCGTTTCATGGGT
TGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCG
GACAGAACCGAAGGTCACGGTAGTAAGATCGACAGCACGCAGGGAAGATCGAGCCGATCACTGGC
TTACACATTCTACCTCTCCGGCCGGTGGAGCACCTCCACGCCCGTTTCATGGGTTGGCTTAGGCA
GAGGGAGTTCATTCCGTGTCTAAGCCCCAGTCAGACCAAGGGTTGTGGCAGCGAGACTAACAGCA
CGCAAAACGGGACCGGGCTGATCCCCAGCTTCATCATTATGCCTCTCTGACCGGCTCAACGCCCG
AACGCTCAATTCATGGGTTGACTTAGGCATACGGAGGTCATTCCCAGTCTAAGAGCGGACCAGAC
CGAGAGTTACGGCAATAGGATCGATAACACGCAGGCGGGATCGCACCGATCCCCGGCTTCTGCAT
TCTGCCTCTCCAATCGACTGAACACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAAAGT
TCATCCCATATCTAACCATACAGAGTTCATTCCCAATCTAAGATCAAACCGAACCGAGGGTTGCA
ATAGCAAGACCAGTAGCAGGATCGACAACACGCCAT
Found at i:20728390 original size:881 final size:874
Alignment explanation
Indices: 20726727--20728367 Score: 1865
Period size: 881 Copynumber: 1.9 Consensus size: 874
20726717 GCTGAGCTAC
* * *
20726727 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATGCGGAGTTCATCCCCAATCTAAGCATACGGAGT
1 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACGGAGT
* * * * * * *
20726792 TCATTCCCAGTCTAAGATCGGACCGAATCGAAGGTCATGGTTGTAGGATCGGCAGCACGCAGGGA
66 TCATTCCCAATCTAAGATCGGACAGAACCGAAGGTCACGGTAGTAAGATCGACAGCACGCAGGGA
* ** * *
20726857 AGATCGAGCCGATCACTGGCTTACGCATTCTATGTCTCCGGCCGGTGGAGCGCCTCTACGCCCGT
131 AGATCGAGCCGATCACTGGCTTACACATTCTACCTCTCCGGCCGGTGGAGCACCTCCACGCCCGT
** * * *
20726922 TTTGTGGGTTGGCTTAGGCAGGGGGAGTTCATTCCGTGTCTATGCCCCAGTCAGACCGAGGGTTG
196 TTCATGGGTTGGCTTAGGCAGAGGGAGTTCATTCCGTGTCTAAGCCCCAGTCAGACCAAGGGTTG
* * * * * *
20726987 TGGCAGCGAGACTAACAGCACGTAAAACTGGATCGGGCTGATCCTCGGCTTTATCATTATGCCTC
261 TGGCAGCGAGACTAACAGCACGCAAAACGGGACCGGGCTGATCCCCAGCTTCATCATTATGCCTC
* * * * * * *
20727052 TCTGACTGGCTCAGCGTCTGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
326 TCTGACCGGCTCAACGCCCGAACGCTCAATTCATGGGTTGACTTAGGCATACGGAGGTCATTCCC
* * * * * *
20727117 AGTCTAAGATCGGACCGGACTGAGAGTTATGGTAGTAGGATCGATAACACGCAGGCGGGATCGCA
391 AGTCTAAGAGCGGACCAGACCGAGAGTTACGGCAATAGGATCGATAACACGCAGGCGGGATCGCA
* * * * *
20727182 CCGATCCTCGGCTTGTGCATTCTGCCTCTTCAGTCGACTGAGCACCCGCACACTCGTTTCGTGGG
456 CCGATCCCCGGCTTCTGCATTCTGCCTCTCCAATCGACTGAACACCCGCACACTCGTTTCGTGGG
* ** * * ** **
20727247 TTGGCTTAGGCATACGTAGTTCATTCCATGTCTAAGTATATGGAGTTCATTCCCAATCTAAGATC
521 TTGACTTAGGCATACAAAGTTCATCCCATATCTAACCATACAGAGTTCATTCCCAATCTAAGATC
* *
20727312 AAACCGAACCGAGGGTTGCAATAGCAAGACCAGTAGCAGGATCGACAACACGCCATGGGGACCAG
586 AAACCGAACCAAGGGTTG--ATAG--AGA-CAGTA--AGGATCGACAACACGCCAGGGGGACCAG
* * * * * ** * * * *
20727377 GTCGATCCCTGGCTTGTGCATTCTGCCCCTCCAGTCGGTTGAGCGCCCGTATGCTCGTTTCGTGG
644 GCCGATCCCTGACTTGCGCATTCTGCCCCTCCAGCCGGTTGAGCACCCACACGCCCATTTCATGG
* * * *
20727442 GTTAACTTAGGTATATGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGC
709 GTTAACTTAGGCATAAGGAGTCCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGC
20727507 AGGACCAGCAACGGGATTGACAGCACGCAGAGGGGGACCAGGCTAATCCCTGGCTTACGTATTAT
774 AGGACCAGCAACGGGATTGACAGCACGCAGAGGGGGACCAGGCTAATCCCTGGCTTACGTATTAT
20727572 GCCTCTTCGGCTGACCTTTCCGGCCAGCTGAGCCCT
839 GCCTCTTCGGCTGACCTTTCCGGCCAGCTGAGCCCT
* * * *
20727608 CGCACGCTCGTTTCATTGGTTGACTTAGGCATACAGAGTTGATCCCTATTCTAAGCATACGGAGT
1 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACGGAGT
* * * ** *
20727673 TCATTCCCAATCTAAGATTGGACAGGACCGAGGGTTGCGGTAGTAAGATCGACAGCACGCAGGGG
66 TCATTCCCAATCTAAGATCGGACAGAACCGAAGGTCACGGTAGTAAGATCGACAGCACGCAGGGA
* * * * *
20727738 GGATCGAGCCGATCCAC-GGCTTGCACATTCTACCTCTCCGGTCGGTTGAGCACC-CACACGTCC
131 AGATCGAGCCGAT-CACTGGCTTACACATTCTACCTCTCCGGCCGGTGGAGCACCTC-CACGCCC
* * *
20727801 GTTTCATGGGTTGGCTTAGGCATAGGTAGTTCATT-CGATGTCTAAGCCCCAGTCGGACCAAGGG
194 GTTTCATGGGTTGGCTTAGGCAGAGGGAGTTCATTCCG-TGTCTAAGCCCCAGTCAGACCAAGGG
* * * ** * *
20727865 TTGTGGCAGCGGGA-TCGACAGCACGCAGAGGGGGACCGGGTTGATCCCCAGCTTGCGT-ATTAT
258 TTGTGGCAGCGAGACT-AACAGCACGCAAAACGGGACCGGGCTGATCCCCAGCTT-CATCATTAT
* * * *
20727928 GCCTCTCTGGCCGGCTCAATGCCCGAACGGTCAATTCATGGGTTGGCTTAGGCATACGGAGGTCA
321 GCCTCTCTGACCGGCTCAACGCCCGAACGCTCAATTCATGGGTTGACTTAGGCATACGGAGGTCA
* * * ** *
20727993 TTCCCAGTCTAAGAGCGGATCAGACCGAGGGTTGCGGCAATAGGATCGATAGGACGCAGGGGGGA
386 TTCCCAGTCTAAGAGCGGACCAGACCGAGAGTTACGGCAATAGGATCGATAACACGCAGGCGGGA
* * * **
20728058 TC-CAGTCGGTCCCCGGCTTACT-CATTCTGCCTCTCCAATCGATTGAACACCCGCACGTTCGTT
451 TCGCA-CCGATCCCCGGCTT-CTGCATTCTGCCTCTCCAATCGACTGAACACCCGCACACTCGTT
* *
20728121 TTGTGGGTTGACTTAGGCATACAAAGTTCATCCCCA-ATCTAACCATACAGAGTTCATTCCCAGT
514 TCGTGGGTTGACTTAGGCATACAAAGTTCAT-CCCATATCTAACCATACAGAGTTCATTCCCAAT
* * ** * *
20728185 CTAAGATCAGACC-AGACTAAGGGTTG-T-G-G-CAGT-AGGATCGGTAACTCG-CAGGGGGGAT
578 CTAAGATCAAACCGA-ACCAAGGGTTGATAGAGACAGTAAGGATCGACAACACGCCA-GGGGGAC
* * * * *
20728243 CGGGCCGAT-CCTCGACTTGCGTATTCTGCCTCTCCGGCCGGTTGAGCACTCACACGCCCATTTC
641 CAGGCCGATCCCT-GACTTGCGCATTCTGCCCCTCCAGCCGGTTGAGCACCCACACGCCCATTTC
** * *
20728307 ATGGGTTGGCTTAGGCGTAAGGAGTCCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTT
705 ATGGGTTAACTTAGGCATAAGGAGTCCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
20728368 ACGGTAGCGG
Statistics
Matches: 622, Mismatches: 127, Indels: 34
0.79 0.16 0.04
Matches are distributed among these distances:
868 5 0.01
869 114 0.18
872 4 0.01
874 1 0.00
877 1 0.00
878 1 0.00
880 7 0.01
881 481 0.77
882 8 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (874 bp):
CGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACGGAGT
TCATTCCCAATCTAAGATCGGACAGAACCGAAGGTCACGGTAGTAAGATCGACAGCACGCAGGGA
AGATCGAGCCGATCACTGGCTTACACATTCTACCTCTCCGGCCGGTGGAGCACCTCCACGCCCGT
TTCATGGGTTGGCTTAGGCAGAGGGAGTTCATTCCGTGTCTAAGCCCCAGTCAGACCAAGGGTTG
TGGCAGCGAGACTAACAGCACGCAAAACGGGACCGGGCTGATCCCCAGCTTCATCATTATGCCTC
TCTGACCGGCTCAACGCCCGAACGCTCAATTCATGGGTTGACTTAGGCATACGGAGGTCATTCCC
AGTCTAAGAGCGGACCAGACCGAGAGTTACGGCAATAGGATCGATAACACGCAGGCGGGATCGCA
CCGATCCCCGGCTTCTGCATTCTGCCTCTCCAATCGACTGAACACCCGCACACTCGTTTCGTGGG
TTGACTTAGGCATACAAAGTTCATCCCATATCTAACCATACAGAGTTCATTCCCAATCTAAGATC
AAACCGAACCAAGGGTTGATAGAGACAGTAAGGATCGACAACACGCCAGGGGGACCAGGCCGATC
CCTGACTTGCGCATTCTGCCCCTCCAGCCGGTTGAGCACCCACACGCCCATTTCATGGGTTAACT
TAGGCATAAGGAGTCCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCA
GCAACGGGATTGACAGCACGCAGAGGGGGACCAGGCTAATCCCTGGCTTACGTATTATGCCTCTT
CGGCTGACCTTTCCGGCCAGCTGAGCCCT
Found at i:20728592 original size:501 final size:501
Alignment explanation
Indices: 20727608--20728696 Score: 1229
Period size: 501 Copynumber: 2.2 Consensus size: 501
20727598 GCTGAGCCCT
* * * * * * *
20727608 CGCACGCTCGTTTCATTGGTTGACTTAGGCATACAGAGTTGATCCCTATTCTAAGCATACGGAGT
1 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAACCATACAGAGT
* ** * * *
20727673 TCATTCCCAATCTAAGATTGGACAGGACCGAGGGTTGCGGTAGTAAGATCGACAGCACGCAGGGG
66 TCATTCCCAGTCTAAGATCAGACAGGACCAAGGGTTGCGGCAGTAAGATCGACAACACGCAGGGG
* * * *
20727738 GGATCGAGCCGATCCACGGCTTGCACATTCTACCTCTCCGGTCGGTTGAGCACCCACACGTCCGT
131 GGATCGAGCCGATCCACGACTTGCACATTCTACCTCTCCGGCCGGTTGAGCACCCACACGCCCAT
* * * *
20727803 TTCATGGGTTGGCTTAGGCATAGGTAGTTCATTCGATGTCTAAGCCCCAGTCGGACCAAGGGTTG
196 TTCATGGGTTGGCTTAGGCATAGGTAGTCCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTA
* * *
20727868 TGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGGGTTGATCCCCAGCTTGCGTATTATGCCTC
261 CGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGTTGATCCCCAGCTTGCGCATTATGCCTC
* * *
20727933 TCTGGCCGGCTCAATGCCCGAACGGTCAATTCATGGGTTGGCTTAGGCATACGGAGGTCATTCCC
326 TCTGACCGGCTCAACGCCCGAACGGTCAATTCATGGGTTGACTTAGGCATACGGAGGTCATTCCC
* * * * * * * *
20727998 AGTCTAAGAGCGGATCAGACCGAGGGTTGCGGCAATAGGATCGATAGGACGCAGGGGGGATCCAG
391 AGTCTAAGAGCAGACCAGACCGAGGGTTACGGCAACAGGATCGACAGCACACAGGGGGAATCCAG
* * *
20728063 TCGGTCCCCGGCTTACTCATTCTGCCTCTCCAATCGATTGAACACC
456 TAGGTCCCCGGCTTACTCATTCTGCCTCTCCAACCGACTGAACACC
* * *
20728109 CGCACGTTCGTTTTGTGGGTTGACTTAGGCATACAAAGTTCATCCCCAATCTAACCATACAGAGT
1 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAACCATACAGAGT
* * * ** *
20728174 TCATTCCCAGTCTAAGATCAGACCA-GACTAAGGGTTGTGGCAGTAGGATCGGTAACTCGCAGGG
66 TCATTCCCAGTCTAAGATCAGA-CAGGACCAAGGGTTGCGGCAGTAAGATCGACAACACGCAGGG
* * ** * *
20728238 GGGATCGGGCCGATCCTCGACTTGCGTATTCTGCCTCTCCGGCCGGTTGAGCACTCACACGCCCA
130 GGGATCGAGCCGATCCACGACTTGCACATTCTACCTCTCCGGCCGGTTGAGCACCCACACGCCCA
* * *
20728303 TTTCATGGGTTGGCTTAGGCGTAAGG-AGTCCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGT
195 TTTCATGGGTTGGCTTAGGCAT-AGGTAGTCCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGT
* * * * * * *
20728367 TACGGTAGCGGGACCGACAGCAGGTAGAGGGGGATCGGGTTGATCCCCGGCTTGTGCCTTATGCC
259 TACGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGTTGATCCCCAGCTTGCGCATTATGCC
* * * * ** * *
20728432 TAT-TCGATCGGCTCAACGCCCGTACGTTCGTTTCGTGGGTTGACTTAGGCTTACGG-GGTTCAT
324 TCTCT-GACCGGCTCAACGCCCGAACGGTCAATTCATGGGTTGACTTAGGCATACGGAGG-TCAT
* * * * * * *
20728495 TCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGTAGCAGGATCGACAGCACATAGGGGGAAT
387 TCCCAGTCTAAGAGCAGACCAGACCGAGGGTTACGGCAACAGGATCGACAGCACACAGGGGGAAT
** * * ** *
20728560 CGGGTAGGTCCTCGGCTT-CTGCATTTTGCCTCTCCGGCCGACTGAACGCC
452 CCAGTAGGTCCCCGGCTTACT-CATTCTGCCTCTCCAACCGACTGAACACC
* * ** * *
20728610 CGTACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCAT-TCCATGTCT-ACGCATACAGA
1 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-ATCTAAC-CATACAGA
* *
20728673 GTTCATTCCTAGTCTAACATCAGA
64 GTTCATTCCCAGTCTAAGATCAGA
20728697 TCTAATCGAG
Statistics
Matches: 485, Mismatches: 96, Indels: 14
0.82 0.16 0.02
Matches are distributed among these distances:
500 10 0.02
501 470 0.97
502 5 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (501 bp):
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAACCATACAGAGT
TCATTCCCAGTCTAAGATCAGACAGGACCAAGGGTTGCGGCAGTAAGATCGACAACACGCAGGGG
GGATCGAGCCGATCCACGACTTGCACATTCTACCTCTCCGGCCGGTTGAGCACCCACACGCCCAT
TTCATGGGTTGGCTTAGGCATAGGTAGTCCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTA
CGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGTTGATCCCCAGCTTGCGCATTATGCCTC
TCTGACCGGCTCAACGCCCGAACGGTCAATTCATGGGTTGACTTAGGCATACGGAGGTCATTCCC
AGTCTAAGAGCAGACCAGACCGAGGGTTACGGCAACAGGATCGACAGCACACAGGGGGAATCCAG
TAGGTCCCCGGCTTACTCATTCTGCCTCTCCAACCGACTGAACACC
Found at i:20728637 original size:158 final size:158
Alignment explanation
Indices: 20728170--20728655 Score: 431
Period size: 158 Copynumber: 3.1 Consensus size: 158
20728160 TAACCATACA
* * * * * ** * * *
20728170 GAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGTGGCAGTAGGATCGGTAACTCGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGTAGCAGGATCGACAGCACGTA
** * * * * * * * **
20728235 GGGGGGATCGGGCCGATCCTCGACTTGC-GTATTCTGCCTCTCCGGCCGGTTGAGCACTCACACG
66 GGGGGGATCGGGTAGATCCTCGGCTT-CTGCATTATGCCTCTCCGGCCGGCTGAACGCCCGTACG
* * * *
20728299 CCCATTTCATGGGTTGGCTTAGGCGTAAG
130 CTCGTTTCGTGGGTTGGCTTAGGCATAAG
* ** * * * *
20728328 GAGTCCATT-CCATGTCTAAGCCCCAG-CCGGA-TCGAGGGTTACGGTAGCGGGACCGACAGCAG
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACT-GAGGGTTATGGTAGCAGGATCGACAGCAC
* * * * * * ** *
20728390 GTAGAGGGGGATCGGGTTGATCCCCGGCTTGTGCCTTATGCCTATTCGATCGGCTCAACGCCCGT
63 GTAG-GGGGGATCGGGTAGATCCTCGGCTTCTGCATTATGCCTCTCCGGCCGGCTGAACGCCCGT
* * * *
20728455 ACGTTCGTTTCGTGGGTTGACTTAGGCTTACG
127 ACGCTCGTTTCGTGGGTTGGCTTAGGCATAAG
* *
20728487 GGGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGTAGCAGGATCGACAGCACATA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGTAGCAGGATCGACAGCACGTA
* * * *
20728552 GGGGGAATCGGGTAGGTCCTCGGCTTCTGCATTTTGCCTCTCCGGCCGACTGAACGCCCGTACGC
66 GGGGGGATCGGGTAGATCCTCGGCTTCTGCATTATGCCTCTCCGGCCGGCTGAACGCCCGTACGC
*
20728617 TCGTTTCGTGGGTTGGCTTAGGCATATG
131 TCGTTTCGTGGGTTGGCTTAGGCATAAG
20728645 GAGTTCATTCC
1 GAGTTCATTCC
20728656 ATGTCTACGC
Statistics
Matches: 250, Mismatches: 70, Indels: 16
0.74 0.21 0.05
Matches are distributed among these distances:
157 4 0.02
158 127 0.51
159 115 0.46
160 4 0.02
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGTAGCAGGATCGACAGCACGTA
GGGGGGATCGGGTAGATCCTCGGCTTCTGCATTATGCCTCTCCGGCCGGCTGAACGCCCGTACGC
TCGTTTCGTGGGTTGGCTTAGGCATAAG
Found at i:20730265 original size:154 final size:154
Alignment explanation
Indices: 20729789--20730267 Score: 448
Period size: 159 Copynumber: 3.1 Consensus size: 154
20729779 ATGGTTACGA
* * *
20729789 TAGCAGGATCGACAGCACGTAGGAGGGACCGGATCGATCCTCGGCTTGCGCATTTTGCCTCTCCG
1 TAGCAGGATCGACAGCACGCAGG-GGGACCGGATCGATCC-CTGCTT-CGCATTATGCCTCTCCG
* * * * * *
20729854 GCTGGCTGAGCA-CCCGCACACCCATTTTTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
63 ACCGGCTGAG-AGCCCGCACACTC-GTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * *
20729918 CTAAGCCCTAGCCGTACCGAAGGTTGTGG
126 CTAAGCCCCAGTCGGACCGAAGGTTGTGG
**
20729947 TAGC-GAGATCGGTAGCACGCAGAAGGGGACC-GACTCGATCCCCTGCTTGCGCATTATGCCTCT
1 TAGCAG-GATCGACAGCACGCAG--GGGGACCGGA-TCGAT-CCCTGCTT-CGCATTATGCCTCT
** * * * * * * * *
20730010 -TTAGTCAGCTCAGTGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCA
60 CCGA-CCGGCTGAGAGCCCGCACACTCGTTT-ATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* ** * **
20730074 AGTCTAAG-ATCAGATCGGATCGAAGGTTACGG
123 TGTCTAAGCCCCAG-TCGGACCGAAGGTTGTGG
* * * *
20730106 TAGCAGGATCGACAGCACGCAGGGGGATCGGGTCGGTCCCTAGCTT-GCATTCTGCCTCTCCGAC
1 TAGCAGGATCGACAGCACGCAGGGGGACCGGATCGATCCCT-GCTTCGCATTATGCCTCTCCGAC
*
20730170 CGGCTGAGAGCCCGCACACTCGTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
65 CGGCTGAGAGCCCGCACACTCGTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
20730235 GCCCCAGTCGGACCGAGGGTTGTGG
130 GCCCCAGTCGGACCGAAGGTTGTGG
*
20730260 CAGCAGGA
1 TAGCAGGA
20730268 CTGGCAGCGA
Statistics
Matches: 252, Mismatches: 55, Indels: 32
0.74 0.16 0.09
Matches are distributed among these distances:
154 58 0.23
155 35 0.14
156 5 0.02
157 15 0.06
158 25 0.10
159 110 0.44
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (154 bp):
TAGCAGGATCGACAGCACGCAGGGGGACCGGATCGATCCCTGCTTCGCATTATGCCTCTCCGACC
GGCTGAGAGCCCGCACACTCGTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CCCCAGTCGGACCGAAGGTTGTGG
Found at i:20730445 original size:26 final size:26
Alignment explanation
Indices: 20730393--20730445 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
20730383 GTTGACTTAG
*
20730393 GCATACGGAGTTCATCCCCAATGTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * * *
20730419 GCATATGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
20730445 G
1 G
20730446 ATCAAATCGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:20733812 original size:26 final size:26
Alignment explanation
Indices: 20733782--20733834 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20733772 GTTGACTTAG
*
20733782 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
20733808 GCATACAGAGTTCGTTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20733834 G
1 G
20733835 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20734311 original size:26 final size:26
Alignment explanation
Indices: 20734281--20734332 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20734271 GTTGGCTTAG
20734281 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
20734307 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20734333 AATCGGTTCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20735187 original size:354 final size:349
Alignment explanation
Indices: 20734258--20735723 Score: 1173
Period size: 343 Copynumber: 4.1 Consensus size: 349
20734248 GTGCCTGCAT
* * *
20734258 GCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCATACGGAGTTCATT
* ** * * **
20734323 CCCAGTCTAAAATCGGTTCGGACTGAGGGTTGCGGCATCAGGACAGCAGCAGGATCGGTAGCACG
65 CCCAGTCTAAGATCGGACCGGACTGAGGGTT-C-GCGT-AGG-CAACAGCAGGATCGACAGCACG
* * * * * * * **
20734388 TAGGGGGGATGGGGCCGATCCCTGGCTTGTGCATTTTACCTCTTCAACCGGTTGAGCACTTGCAC
126 TAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAACCGGTTGAGCACCCGCAC
* * * *
20734453 AC-CAGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAGCCAGACCT
191 GCTCA-TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCG
* * * * ***
20734517 AGGGTTGTGGCAGCGGGAC-CAGTAGCACGCAGCA-GGGGACCGGGCTGATGCCT-GACTTTTAC
255 AGGGTTGTGGCAGCGGGACAGAGTAGCACGCAG-AGGGGGATCGGGCCGAT-CCTCGGCTTGCGC
* * * *
20734579 ATTATGCCTCTCTGGTCGGCTGAGCACCCGCAC
318 ATTATGCCTCTCCGGCCGGCTGGGC-GCCGCAC
* * * * *
20734612 GCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAGCATACGAAGTTCGTT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTAAGCATACGGAGTTCATT
* * * *
20734677 CCCAATCTAACATCGGACCGGACCGAGGCTT---GT-GG---CAGCAGGATCGACAGCACGTAGG
65 CCCAGTCTAAGATCGGACCGGACTGAGGGTTCGCGTAGGCAACAGCAGGATCGACAGCACGTAGG
* ** * * * * * ** * * *
20734735 GGGGACCGAACTGATCCTCGACATGCTCATTCTGCCTCTCCAACTGACTGATCGCCCGCACGCCC
130 GGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAACCGGTTGAGCACCCGCACGCTC
* * * * *
20734800 GTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCACGTCTAAGCCCCCGCCGGACCGAGGGT
195 ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
* *
20734865 TGTGGCAGCGGGATC-GA-TAGCACGCAGGGGGGGATCGGGCCAATCC-CTGGCTTGCGCATTAT
260 TGTGGCAGCGGGA-CAGAGTAGCACGCAGAGGGGGATCGGGCCGATCCTC-GGCTTGCGCATTAT
**
20734927 GCCTCTCCGGCCGGCTGGGCGCCTGTGC
323 GCCTCTCCGGCCGGCTGGGCGCC-GCAC
* * * * *
20734955 GCTCATTTCGT-GGTTGGCTTAGGCATATGGAGTTCATTCCATGTCCAAGCATAGGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCATACGGAGTTCATT
* * * * * *
20735019 CCCAGTCTAAGATTGGATCGGACTGAGGGTTACGGTGGTAGGCCAACAGTAGGATCGGCAGCGCG
65 CCCAGTCTAAGATCGGACCGGACTGAGGGTT-C-G-CGTAGG-CAACAGCAGGATCGACAGCACG
* **** *
20735084 TAGGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGGTTTAGCACCCGCA
126 TA-GGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAACCGGTTGAGCACCCGCA
* * *
20735149 CGCTCATTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTATAAGCCCCAGCCAGACTG
190 CGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCG
* * * *
20735214 AGGGTTGTGGCAGCAGGACCGATAGCAGGATCGGTAGCACGCAAAGAGGGATCGGGCTGATCGTC
255 AGGGTTGTGGCAGC-GG---G--A-CA-GA---GTAGCACGCAGAGGGGGATCGGGCCGATCCTC
*
20735279 GGCTTACGCATTATGCCTCTCCGACTGGCCTCTCTGGCCGGTTGAGCGCGCCGCAC
309 GGCTTGCGCATTATGCCTCT-C--C-GG---C-C-GG-C---TG-G-GCGCCGCAC
*
20735335 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATACGGAGTTCATT
* * * * * **
20735400 CCTAGTCTAAGATCAGACCGGA-TAGAGGGTT-GCG-A--C--TA-CAGGATTGACAGCTCACAG
65 CCCAGTCTAAGATCGGACCGGACT-GAGGGTTCGCGTAGGCAACAGCAGGATCGACAGCACGTA-
*** * * *** **
20735457 GGGGGGATCGGGCCGATCCCCGACCCCCACATTCTGTCTCTCCGGTCGGTTGAGTGCCCGCACGC
128 GGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAACCGGTTGAGCACCCGCACGC
* * ** *
20735522 TCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGG
193 TCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
* * *
20735587 GTTGTGGCAGCGAGACTG-GCAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTAT
258 GTTGTGGCAGCGGGACAGAGTAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTAT
* ** ***
20735651 GCCTCTTCGGTAGGCTCAACAGCC-CAC
323 GCCTCTCCGGCCGGCTGGGC-GCCGCAC
***
20735678 GTCTCGTTTCGTGGGTTGACTTATATATACGGAGTTCATTCGCAGT
1 G-CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CAGT
20735724 GCAAGATCAG
Statistics
Matches: 888, Mismatches: 170, Indels: 118
0.76 0.14 0.10
Matches are distributed among these distances:
341 3 0.00
342 70 0.08
343 198 0.22
344 44 0.05
345 1 0.00
347 2 0.00
348 3 0.00
349 5 0.01
353 18 0.02
354 196 0.22
355 6 0.01
358 47 0.05
360 2 0.00
362 3 0.00
363 1 0.00
364 1 0.00
366 43 0.05
367 2 0.00
369 2 0.00
370 138 0.16
371 1 0.00
373 2 0.00
374 1 0.00
375 2 0.00
376 2 0.00
377 1 0.00
378 1 0.00
379 2 0.00
380 13 0.01
381 75 0.08
382 3 0.00
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (349 bp):
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCGGACCGGACTGAGGGTTCGCGTAGGCAACAGCAGGATCGACAGCACGTAGGG
GGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAACCGGTTGAGCACCCGCACGCTCA
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
GTGGCAGCGGGACAGAGTAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCC
TCTCCGGCCGGCTGGGCGCCGCAC
Found at i:20735388 original size:26 final size:26
Alignment explanation
Indices: 20735358--20735410 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20735348 GTTGACTTAG
20735358 GCATACGGAGTTCATTGCC-AGTCTAA
1 GCATACGGAGTTCATT-CCTAGTCTAA
20735384 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
20735410 G
1 G
20735411 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:20735899 original size:26 final size:26
Alignment explanation
Indices: 20735860--20735919 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
20735850 GTTGGCTTAG
*
20735860 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAATTCATTCCCA-GTCTAA
*
20735886 GCATAGGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
20735912 G-AT-CGGAA
1 GCATACGGAA
20735920 CAGACTGAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 4 0.13
25 2 0.07
26 21 0.70
27 3 0.10
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:20737857 original size:171 final size:171
Alignment explanation
Indices: 20737599--20737928 Score: 366
Period size: 171 Copynumber: 1.9 Consensus size: 171
20737589 AGACCGAACT
* * * * ** *
20737599 GAGGGTTGCGGTAGCAGGACCAGTAGTAGGATCGGTAGCACGCAGGGGGGGATCGGGCCGATCCC
1 GAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGATAGCACGCAAAGGGGGATAGGGCCGATCCC
*
20737664 TGGCTTGTGCAATCTACCTCTCCAGCCAACTGAGCGCCCGCACACTCATTTCGTGGGTTGGA-TT
66 TGGCTTGTGCAATCTACCTCTCCAGCCAACTGAGCGCCCGCACACTCATTTCATGGGTT-GACTT
* *
20737728 AGGA-ATACGGAGTTCAT-TCCATGTCTAAGCCCCAGTCGGACC
130 A-GATAGACGGAGTTCATCCCCA-GTCTAAGCCCCAGTCGGACC
* * * * *
20737770 GAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGATAGCATGCAAAGGGGGATAGGGCTGATCCC
1 GAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGATAGCACGCAAAGGGGGATAGGGCCGATCCC
* * *** * *
20737835 TGGC-TG-GCGAAT-TATGCCTCTCCGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
66 TGGCTTGTGC-AATCTA--CCTCTCCAGCCAACTGAGCGCCCGCACACTCATTTCATGGGTTGAC
20737897 TTAGATAGACGGAGTTCATCCCCAGTCTAAGC
128 TTAGATAGACGGAGTTCATCCCCAGTCTAAGC
20737929 ATACGGAGTT
Statistics
Matches: 131, Mismatches: 22, Indels: 12
0.79 0.13 0.07
Matches are distributed among these distances:
169 4 0.03
170 9 0.07
171 115 0.88
172 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.33, T:0.21
Consensus pattern (171 bp):
GAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGATAGCACGCAAAGGGGGATAGGGCCGATCCC
TGGCTTGTGCAATCTACCTCTCCAGCCAACTGAGCGCCCGCACACTCATTTCATGGGTTGACTTA
GATAGACGGAGTTCATCCCCAGTCTAAGCCCCAGTCGGACC
Found at i:20738221 original size:158 final size:158
Alignment explanation
Indices: 20737966--20738270 Score: 425
Period size: 158 Copynumber: 1.9 Consensus size: 158
20737956 CGGACTGGAT
* * * *
20737966 CGAGGGTTGTGGCAGCAGGATCGGAAGCACGTAGGGGGGACCAGGCTGATCCTCGACTTGCGCAT
1 CGAGGGTTGTGGCAGCAGGATCGGAAGCACGCAGGAGGGACCAGGCCGATCCCCGACTTGCGCAT
* * * * **
20738031 TCTGCCTCTCTGACCGACTGAGCGCCCGCACGCCCATTTCGTGGGTTGGGTTAGGCATGGGGAGT
66 TCTGCCTCTCAGACCGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGT
20738096 TCATTCCACGTCTAAGCCCCAGCCAGTC
131 TCATTCCACGTCTAAGCCCCAGCCAGTC
** * *
20738124 CGAGGGTTGTGGCAGTGGGATCGGCAGCACGCAGGAGGGACCAGGCCGATCCCCGGCTTGCGCAT
1 CGAGGGTTGTGGCAGCAGGATCGGAAGCACGCAGGAGGGACCAGGCCGATCCCCGACTTGCGCAT
* *
20738189 TCTGCCTCTCCAG-CCTG-CTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
66 TCTGCCTCT-CAGACC-GACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGA
*
20738252 GTTCATTCCATGTCTAAGC
129 GTTCATTCCACGTCTAAGC
20738271 ATACAGAGTT
Statistics
Matches: 128, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
158 125 0.98
159 3 0.02
ACGTcount: A:0.17, C:0.30, G:0.32, T:0.21
Consensus pattern (158 bp):
CGAGGGTTGTGGCAGCAGGATCGGAAGCACGCAGGAGGGACCAGGCCGATCCCCGACTTGCGCAT
TCTGCCTCTCAGACCGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGT
TCATTCCACGTCTAAGCCCCAGCCAGTC
Found at i:20739637 original size:26 final size:26
Alignment explanation
Indices: 20739601--20739651 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20739591 TGACTTAGGC
20739601 ATACAGAGTTCATCCCCAGTCTAAGT
1 ATACAGAGTTCATCCCCAGTCTAAGT
*
20739627 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
20739652 ATCTAATCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGT
Found at i:20741113 original size:26 final size:26
Alignment explanation
Indices: 20741077--20741129 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20741067 GTTGACTTAG
*
20741077 GCATACGGAGTTCATACCTAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
* *
20741103 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
20741129 G
1 G
20741130 ATTGAAACGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:20741410 original size:159 final size:159
Alignment explanation
Indices: 20741226--20741612 Score: 399
Period size: 159 Copynumber: 2.4 Consensus size: 159
20741216 TAGTCGATTG
* * * *
20741226 AGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATTAAGAGTTCATTCCATGTCTAAGCCA-
1 AGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCA-TAAGAGTTCATTCCATGTCTAAG-CAT
* *
20741290 CAG-TCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATC-GGACCGATCCC
64 CAGATCGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAG-GGGGGATCAGG-CCGATCCC
* * * * * *
20741353 CGGCTTTCGCATTATGCC-TCTCCGACTGGCTC
127 CGACTTGCGCATTATACCACCTCCGACCGACTC
* * * *
20741385 ATCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-ATCTAAG-AT
1 AGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAAG-AGTTCATT-CCATGTCTAAGCAT
* * * * * *
20741448 CAGATCGTACCGAGGGTTGCGGTAGTAGGATCGATAGCACGTAGGGGGGATCAGGCCGATCCCCG
64 CAGATCGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGGGGGGATCAGGCCGATCCCCG
* * *
20741513 ACTTGCGCATTCTACCACCTCCGACCGATTG
129 ACTTGCGCATTATACCACCTCCGACCGACTC
* * * *
20741544 AGCGCTCGTACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATG
1 AGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATA-AGAGTTCATTCCATGTCTAAGCAT-
20741609 CAGA
64 CAGA
20741613 GTTCATTCCC
Statistics
Matches: 186, Mismatches: 32, Indels: 18
0.79 0.14 0.08
Matches are distributed among these distances:
157 1 0.01
158 39 0.21
159 136 0.73
160 6 0.03
161 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (159 bp):
AGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGAGTTCATTCCATGTCTAAGCATCA
GATCGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGGGGGGATCAGGCCGATCCCCGAC
TTGCGCATTATACCACCTCCGACCGACTC
Found at i:20741607 original size:26 final size:26
Alignment explanation
Indices: 20741578--20741630 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20741568 GTTGGCTTAG
*
20741578 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
20741604 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20741630 G
1 G
20741631 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20741944 original size:26 final size:26
Alignment explanation
Indices: 20741914--20741966 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20741904 GTTGACTTAG
*
20741914 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
20741940 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20741966 G
1 G
20741967 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20742389 original size:26 final size:26
Alignment explanation
Indices: 20742360--20742412 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20742350 GTTGGCTTAG
20742360 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
*
20742386 GCATCCGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
20742412 G
1 G
20742413 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:20742890 original size:11 final size:11
Alignment explanation
Indices: 20742874--20742899 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
20742864 CCAGAGGCAC
20742874 CATCATCGGAG
1 CATCATCGGAG
20742885 CATCATCGGAG
1 CATCATCGGAG
20742896 CATC
1 CATC
20742900 GTCGAAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (11 bp):
CATCATCGGAG
Found at i:20743605 original size:26 final size:26
Alignment explanation
Indices: 20743553--20743605 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20743543 GTTGACTTAG
*
20743553 GCATACAGAGTTCATCCCCAGTGTAA
1 GCATACAGAGTTCATCCCCAATGTAA
* * *
20743579 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACAGAGTTCATCCCCAATGTAA
20743605 G
1 G
20743606 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATGTAA
Done.