Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 196 of 402
Found at i:20743880 original size:158 final size:159
Alignment explanation
Indices: 20743718--20744082 Score: 389
Period size: 159 Copynumber: 2.3 Consensus size: 159
20743708 CCCGCGCGCC
* * * *
20743718 CGTTTCGTGGGTCGCCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAACCG-ACTGAGGG
1 CGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAACCGAACTGAGGG
* * ** *** * *
20743782 TTGTGGCAGTGGGATTGGCAGCATGCAGAGGG-GGATCGAGCCGATCCCCGGCTTGCGTATT-AT
66 TTGCGACAGCAGGATCAACAGCACGCAG-GGGTGGATCGAGCCGATCCCCGGCTTGCGCATTCA-
* *
20743845 GCCTTTCCGATCGACTCAGCGCCCGAACGCT
129 GCCTCTCCGATCGACTCAGCACCCGAACGCT
** **
20743876 CGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAGATCGGACCGAACTGAGG
1 CGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATT-CCATGTCTAAGCCCCAACCGAACTGAGG
* * * * *
20743940 GTTGCGATAGCAGGATCAACAGCACGCAGGGGTGGATCGGGTCGGTCCCTGGCTTGCGCATTCAG
65 GTTGCGACAGCAGGATCAACAGCACGCAGGGGTGGATCGAGCCGATCCCCGGCTTGCGCATTCAG
* ** *
20744005 CCTCTCCGATCGACTGAGCACTTGCACGCT
130 CCTCTCCGATCGACTCAGCACCCGAACGCT
* *
20744035 CGTTTC-TGGGGTTGGCTTAAGCATATGGAGTTCATTCCATGTCTAAGC
1 CGTTTCGT-GGGTTGACTTAGGCATATGGAGTTCATTCCATGTCTAAGC
20744083 ATACGGAGTT
Statistics
Matches: 170, Mismatches: 31, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
158 51 0.30
159 118 0.69
160 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (159 bp):
CGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAACCGAACTGAGGG
TTGCGACAGCAGGATCAACAGCACGCAGGGGTGGATCGAGCCGATCCCCGGCTTGCGCATTCAGC
CTCTCCGATCGACTCAGCACCCGAACGCT
Found at i:20744106 original size:26 final size:26
Alignment explanation
Indices: 20744052--20744106 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
20744042 GGGGTTGGCT
* *
20744052 TAAGCATATGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCATGAC
20744078 TAAGCATACGGAGTTCATTCCCA-GAC
1 TAAGCATACGGAGTTCATT-CCATGAC
20744104 TAA
1 TAA
20744107 TATTGGACCG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCATGAC
Found at i:20744489 original size:26 final size:26
Alignment explanation
Indices: 20744460--20744512 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20744450 GTTGACTTAG
20744460 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
** *
20744486 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
20744512 G
1 G
20744513 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:20746003 original size:157 final size:156
Alignment explanation
Indices: 20745544--20746190 Score: 624
Period size: 157 Copynumber: 4.1 Consensus size: 156
20745534 AAGCATACAA
* * * * * ** *
20745544 AGTTCATTCTGAGTCTAAGATCAAATCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACACAG
1 AGTTCATTC-CAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAG
* * * * * * * *
20745609 GGGGGATTGGGCCGATCCCCGACTTGTGCATTCTACCTTTCCGGCCGACTGAGCACCCGCACGCC
65 GGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCACCTGCACGCT
* * *
20745674 CGTTTAATGGGTTGGCCTAGGCATAGGG
129 CGTTTCATGGGTTGGCTTAGGCATACGG
* ** * * * * ** *
20745702 AGTTCTTTCCACGTCTAAGCCCCAG-CAAGATCGAGGGTTATGGCAGTGGGACCGACAGCACGCA
1 AGTTCATTCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACGCA
* * * * * * * * *
20745766 GATGGGGACCAGGCTGATCCCCGACTTGCGGATTATGCCTCTCCGATTGGCTTAGCGCCTGCACG
64 G-GGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCG-TCGGCTGAGCACCTGCACG
*
20745831 CTCGTTTCATGGGTTGACTTAGGCATACGG
127 CTCGTTTCATGGGTTGGCTTAGGCATACGG
* * *
20745861 AGTTCATTCACAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAACAGGATCGATAGCACGCA-
1 AGTTCATTC-CAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAG
* * * *
20745925 GGGGGATCGGGCCGATCCTCGACTTACGCATTTTGCCTCTCCAGTCGGCTGAGCACCTGCACGTT
65 GGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCACCTGCACGCT
*
20745990 CGTTTCGTGGGTTGGCTTAGGCATACGG
129 CGTTTCATGGGTTGGCTTAGGCATACGG
* * *
20746018 AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCAGGATCGATAGCACGTAG
1 AGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAG
* * * * *
20746083 GGGGGATCGAGTCGATCCCCGACTTGCACATTCTGCCTCTCCGAT----TAAGCA-CTCACACGC
65 GGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCG-TCGGCTGAGCACCT-GCACGC
* *
20746143 TAGTTTCATGGGTTGGCTTAGGCATACAG
128 TCGTTTCATGGGTTGGCTTAGGCATACGG
20746172 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCA-GTCTAAG
20746191 CCCTAGTCGG
Statistics
Matches: 397, Mismatches: 80, Indels: 28
0.79 0.16 0.06
Matches are distributed among these distances:
153 5 0.01
154 50 0.13
157 137 0.35
158 87 0.22
159 116 0.29
160 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (156 bp):
AGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGG
GGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGTCGGCTGAGCACCTGCACGCTCG
TTTCATGGGTTGGCTTAGGCATACGG
Found at i:20746382 original size:26 final size:26
Alignment explanation
Indices: 20746348--20746400 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20746338 GTTGACTTAG
20746348 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
20746374 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20746400 G
1 G
20746401 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20746702 original size:159 final size:160
Alignment explanation
Indices: 20746514--20746878 Score: 405
Period size: 159 Copynumber: 2.3 Consensus size: 160
20746504 CGCACGGCCG
* * ***
20746514 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TTGGACTGAGGGT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGGT
* * *
20746578 TGTGGCAGCAGGACCGACAGCACGCAGAGG-GGAATCAAATCGATCCCCAGCTTGCGCATTATGC
66 TGTCGCAGCAGGACCGACAGCACGCAGAGGCAG-ACCAAATCGATCCCCAGCTTGCGCATTATGC
** *
20746642 CTCTCCAACCGGCTCAGTGCCTGAACTCTCA
130 CTCTCCAACCGGCAAAGTGCCTGAACGCTCA
* * * * ***
20746673 TTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCCA-GTCTAAG-ATGGGACCAGACTGAGGG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACTGAGGG
* * ** * * * * *
20746736 TTGTCGCCGCAGGATCGACAGCACGCAGAGGCAGACCAGGTCGGTCCCTAGCTTGTGCGTTCTGC
65 TTGTCGCAGCAGGACCGACAGCACGCAGAGGCAGACCAAATCGATCCCCAGCTTGCGCATTATGC
** *
20746801 CTCTCTGACCGGCAAAGTGCCTGCACGCTCA
130 CTCTCCAACCGGCAAAGTGCCTGAACGCTCA
*
20746832 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGACTAAGCA
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
20746879 TGCGGAGTTC
Statistics
Matches: 166, Mismatches: 35, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
158 4 0.02
159 157 0.95
160 5 0.03
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (160 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGGT
TGTCGCAGCAGGACCGACAGCACGCAGAGGCAGACCAAATCGATCCCCAGCTTGCGCATTATGCC
TCTCCAACCGGCAAAGTGCCTGAACGCTCA
Found at i:20746901 original size:26 final size:26
Alignment explanation
Indices: 20746850--20746902 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20746840 GTTGGCTTAG
*
20746850 GCATACGGAGTTCATTCCATGACTAA
1 GCATACGGAGTTCATTCCATCACTAA
*
20746876 GCATGCGGAGTTCATTCCA-CATCTAA
1 GCATACGGAGTTCATTCCATCA-CTAA
20746902 G
1 G
20746903 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATCACTAA
Found at i:20747239 original size:26 final size:26
Alignment explanation
Indices: 20747209--20747261 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20747199 GTTGACTTTG
*
20747209 GCATACGAAGTTC-ATCCCCAGTCTAA
1 GCATACAAAGTTCAAT-CCCAGTCTAA
20747235 GCATACAAAGTTCAATCCCAGTCTAA
1 GCATACAAAGTTCAATCCCAGTCTAA
20747261 G
1 G
20747262 ACCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (26 bp):
GCATACAAAGTTCAATCCCAGTCTAA
Found at i:20748466 original size:159 final size:155
Alignment explanation
Indices: 20748174--20748590 Score: 437
Period size: 159 Copynumber: 2.6 Consensus size: 155
20748164 ACCACCCATT
* * * * *
20748174 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGG-CTGGCTGAGCGCCCGCACGCGCGTTTCGTTGG
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTC-GGCT-AACGCCCGCACGCTCGTTTCATGGG
* * ** * *
20748238 TT-AGCTTAGGCATAGGGAGTTAATTCCATGTCTAATCCCCAGCCGGACCGAGGGTTGTGGCAGC
64 TTGA-CTTAGGCATA-AGAGTTCATTCCATGTCTAA-GACCAGCCGGACCAAGGGGTGTGGCAGC
*
20748302 GGGATCGACAGCACGCAGAGGGGGATCGGGC
126 AGGATCGACAGCACGCAG-GGGGGATCGGGC
* *
20748333 CGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAACGCCCGCACGCTCATTTCATGGGT
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCT-AACGCCCGCACGCTCGTTTCATGGGT
* *
20748398 TGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCAAGGGGTGTGGTAGCA
65 TGACTTAGGCATA-AGAGTTCATT-CCATGTCTAAGACCAG-CCGGACCAAGGGGTGTGGCAGCA
* *
20748462 GGATCGATAGCACGCAGGGGGGATCGGGT
127 GGATCGACAGCACGCAGGGGGGATCGGGC
* * * * * * * *
20748491 CGGT-CCCTGACTTACGCATTCTGCCTCTCCGATCGACTAAGCACCCGTACGTTCGTTTCATGGG
1 CGATCCCCAG-CTTGCGCATTCTGCCTCTCCGGTCGGCTAA-CGCCCGCACGCTCGTTTCATGGG
* *
20748555 TTGGCTTAGGCATATGAAGTTCATTCCATGTCTAAG
64 TTGACTTAGGCATAAG-AGTTCATTCCATGTCTAAG
20748591 CATACGGGCT
Statistics
Matches: 218, Mismatches: 32, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
157 10 0.05
158 88 0.40
159 115 0.53
160 5 0.02
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (155 bp):
CGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTAACGCCCGCACGCTCGTTTCATGGGTT
GACTTAGGCATAAGAGTTCATTCCATGTCTAAGACCAGCCGGACCAAGGGGTGTGGCAGCAGGAT
CGACAGCACGCAGGGGGGATCGGGC
Found at i:20748576 original size:158 final size:159
Alignment explanation
Indices: 20748242--20748590 Score: 395
Period size: 158 Copynumber: 2.2 Consensus size: 159
20748232 CGTTGGTTAG
** * *** * * *
20748242 CTTAGGCATAGGGAGTTAATTCCATGTCTAATCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGA
1 CTTAGGCATACAGAGTTCATTCCATGTCTAA-GATCAGACCGGACCAAGGGGTGTGGCAGCAGGA
* * *
20748306 TCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCT
65 TCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTACGCATTATGCCTCTCCGATCGACT
*
20748371 CAACGCCCGCACGCTCATTTCATGGGTTGA
130 CAACACCCGCACGCTCATTTCATGGGTTGA
*
20748401 CTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCAAGGGGTGTGGTAGCAGGA
1 CTTAGGCATACAGAGTTCATT-CCATGTCTAAGATCAGACCGGACCAAGGGGTGTGGCAGCAGGA
* * * * *
20748465 TCGATAGCACGCAG-GGGGGATCGGGTCGGT-CCCTGACTTACGCATTCTGCCTCTCCGATCGAC
65 TCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCAG-CTTACGCATTATGCCTCTCCGATCGAC
* * * *
20748528 T-AAGCACCCGTACGTTCGTTTCATGGGTTGG
129 TCAA-CACCCGCACGCTCATTTCATGGGTTGA
*
20748559 CTTAGGCATA-TGAAGTTCATTCCATGTCTAAG
1 CTTAGGCATACAG-AGTTCATTCCATGTCTAAG
20748591 CATACGGGCT
Statistics
Matches: 160, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
157 10 0.06
158 88 0.55
159 59 0.37
160 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
CTTAGGCATACAGAGTTCATTCCATGTCTAAGATCAGACCGGACCAAGGGGTGTGGCAGCAGGAT
CGACAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTACGCATTATGCCTCTCCGATCGACTC
AACACCCGCACGCTCATTTCATGGGTTGA
Found at i:20748919 original size:210 final size:210
Alignment explanation
Indices: 20748534--20748925 Score: 536
Period size: 210 Copynumber: 1.9 Consensus size: 210
20748524 CGACTAAGCA
* * * *
20748534 CCCGTACGTTCGTTTCATGGGTTGGCTTAGGCATATGAAGTTCATTCCATGTCTAAGCATACGGG
1 CCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATAAGAG
* * ** * * * *
20748599 CTTCATTCCTAGTGTAAGATCAGACTGGACTAAGGGTTGCGGGAGCAGGACCAATAGCAGGATCA
66 CTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGACCAACAGCAGGATCA
* * *
20748664 ACAGCACGTAGGGAGGGACCGGGCTGATCCTTGGCTTGCGCATTCTACCTCTTCAGTCGGCTTCT
131 ACAGCACGCAGGGAGGGACCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTTCAGTCGGCTTCT
20748729 CTAATCGGTTGATTG
196 CTAATCGGTTGATTG
* *
20748744 CCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCATATAGA
1 CCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATA-AGA
* * * *
20748809 G-TTCATTCCCAGTCTAAGATCATACCAGACCGAGGGTTGCAGCAGCAGGACCAGCAGTAGGATC
65 GCTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGACCAACAGCAGGATC
* * *
20748873 GACAGCATGCAGGGAGGGATCGGGCCGATCCTCGGCTTAG-GCATTCTACCTCT
130 AACAGCACGCAGGGAGGGACCGGGCCGATCCTCGGCTT-GCGCATTCTACCTCT
20748926 CCAACCGGCT
Statistics
Matches: 156, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
210 153 0.98
211 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (210 bp):
CCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATAAGAG
CTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGACCAACAGCAGGATCA
ACAGCACGCAGGGAGGGACCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTTCAGTCGGCTTCT
CTAATCGGTTGATTG
Found at i:20749193 original size:157 final size:158
Alignment explanation
Indices: 20748862--20749313 Score: 371
Period size: 157 Copynumber: 2.9 Consensus size: 158
20748852 AGCAGGACCA
* * * * * * * * * *
20748862 GCAGTAGGATCGACAGCATGCAG-GGAGGGATCGGGCCGATCCTCGGCTTAGGCATTCTACCTCT
1 GCAGTAGGATCGGCAGCACGCAGAGG-GGGACCAGGTCGATCCCCAGCCTACGCATTCTGCCTCT
* * * * * * * * *
20748926 CCAACCGGCTGAGCACCTGCACGCTCATTTTATGGGTTGACATAGGCATACGAAGTTCGTTCCCA
65 CCGACCGGCTGAGCGCCTACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT--CA
*** * * ** *
20748991 -GTCTAAAATCAAGTCGGATCGAGGGTTGCG
128 TGTCTAAGCCCCAGCCCAACCGAGGGTTGCG
* * * * *
20749021 GTAGTAGGATCGGCAGCACG-TG-GGGGGA-CTGGGCTGATCCCCGGCCTACGCATTCTGCCTCT
1 GCAGTAGGATCGGCAGCACGCAGAGGGGGACCAGGTC-GATCCCCAGCCTACGCATTCTGCCTCT
* * *
20749083 CCGGCCGGCTGAGTGTCCGTACAC-C-CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCC
65 CCGACCGGCTGAGCG-CC-TACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-C
* *
20749146 ATGTGTAAGCCCCAGCCCAACCGAGGGTTGTG
127 ATGTCTAAGCCCCAGCCCAACCGAGGGTTGCG
* * * * * *
20749178 GCAGTGGGA-CTGGCAGCATGCAGAGGGGTACCAGGTCGATCCTCAGCTTGCGCATTCTGCCTCT
1 GCAGTAGGATC-GGCAGCACGCAGAGGGGGACCAGGTCGATCCCCAGCCTACGCATTCTGCCTCT
* *
20749242 CCGACCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCATG
65 CCGACCGGCTGAGCGCCTACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCATG
20749307 TCTAAGC
130 TCTAAGC
20749314 ATAGAGAGTT
Statistics
Matches: 234, Mismatches: 49, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
156 8 0.03
157 106 0.45
158 20 0.09
159 96 0.41
160 4 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCAGTAGGATCGGCAGCACGCAGAGGGGGACCAGGTCGATCCCCAGCCTACGCATTCTGCCTCTC
CGACCGGCTGAGCGCCTACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCATGT
CTAAGCCCCAGCCCAACCGAGGGTTGCG
Found at i:20750033 original size:26 final size:26
Alignment explanation
Indices: 20749997--20750049 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20749987 GTTGACTTAG
*
20749997 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20750023 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20750049 G
1 G
20750050 ATTAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20750523 original size:159 final size:155
Alignment explanation
Indices: 20750023--20750523 Score: 443
Period size: 159 Copynumber: 3.2 Consensus size: 155
20750013 CCCAGTCTAA
* * * *
20750023 GCATACGGAGTTCATTCCCA-GTCTAAGATTAGATCGGACTGAGGGTTGTGACAGTAGGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATTAGA-CCGACCGAGGGTTGTGACAGCAGGATCGAC
** * *
20750087 AGCACAAAAGGGGGACCGGACCGATCCCTGGCTTACGCATTCTGCCTCTTCTGTCGGCTGAGCAC
64 AGCAC-GTAGGGGGATCGGATCGATCCCTGGCTTACGCATTCTGCCTCTTC-GTCGGCTGAGCAC
* * * *
20750152 CAGCATGCTCGTTTCGTGGGCTGGCTTAG
127 CCGAACGCTCGTTTCGTGGGTTGGCTTAG
** * ** * * * * * *
20750181 GCATTGGGAGTTCATTCCATATCTAAGCCCTAGTCCGACCGAAGGTTATGGCAGCGGGA-CAGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATTAGACCGACCGAGGGTTGTGACAGCAGGATC-GAC
* * * * * * * ***
20750245 AGCACGTAGAGGGGGATCGGGTCGATCCCTGGCTTACGTATTATGCCTCTCCGGTTGACTCAATG
64 AGCACGT--AGGGGGATCGGATCGATCCCTGGCTTACGCATTCTGCCTCTTC-GTCGGCTGAGCA
* *
20750310 CCCGAACGCTCGTTTCATGGGTTGACTTAG
126 CCCGAACGCTCGTTTCGTGGGTTGGCTTAG
** * * * *
20750340 GCATACAAAGTTCATT-CTTGGTCTAAGATTGGACCAGACCGAGGGTTGTGATAGCAGGATCGAT
1 GCATACGGAGTTCATTCCAT-GTCTAAGATTAGACC-GACCGAGGGTTGTGACAGCAGGATCGAC
*
20750404 AGCACGTAGGGAAGGATCGGATCGAT-CCTCGACTTACGCATTCTGCCTCTTCGATCGGCTGAGC
64 AGCACGTAGGG--GGATCGGATCGATCCCT-GGCTTACGCATTCTGCCTCTTCG-TCGGCTGAGC
* *
20750468 ACCCGTACGCTCCTTTCGTGGGTTGGCTTAG
125 ACCCGAACGCTCGTTTCGTGGGTTGGCTTAG
20750499 GCATACGGAGTTCATTCCATGTCTA
1 GCATACGGAGTTCATTCCATGTCTA
20750524 TGCATATGGA
Statistics
Matches: 259, Mismatches: 71, Indels: 25
0.73 0.20 0.07
Matches are distributed among these distances:
157 8 0.03
158 54 0.21
159 194 0.75
160 3 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.26
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATTAGACCGACCGAGGGTTGTGACAGCAGGATCGACAG
CACGTAGGGGGATCGGATCGATCCCTGGCTTACGCATTCTGCCTCTTCGTCGGCTGAGCACCCGA
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20750967 original size:26 final size:26
Alignment explanation
Indices: 20750931--20751017 Score: 165
Period size: 26 Copynumber: 3.3 Consensus size: 26
20750921 AGGGTGGTGG
20750931 CAGTCTAAGCATACGGAGTTCATTCC
1 CAGTCTAAGCATACGGAGTTCATTCC
*
20750957 CAGTCTAAGCATACGAAGTTCATTCC
1 CAGTCTAAGCATACGGAGTTCATTCC
20750983 CAGTCTAAGCATACGGAGTTCATTCC
1 CAGTCTAAGCATACGGAGTTCATTCC
20751009 CAGTCTAAG
1 CAGTCTAAG
20751018 ATCAAACCAG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 59 1.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (26 bp):
CAGTCTAAGCATACGGAGTTCATTCC
Found at i:20752274 original size:26 final size:26
Alignment explanation
Indices: 20752245--20752297 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20752235 GTTGACTTAG
20752245 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
20752271 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20752297 G
1 G
20752298 ATTGGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20752571 original size:158 final size:159
Alignment explanation
Indices: 20752345--20752981 Score: 613
Period size: 158 Copynumber: 3.9 Consensus size: 159
20752335 AGCACGTCGA
* * * * * *
20752345 GGGGATCGGGTCGATACCC-GGCTTGCGCATTCTACCTCTCGGGCCGGTTGAGCACCCACATGCC
1 GGGGATCGGGTCGAT-CCCTGACTTGCGCATTCTACCTCTCTGGCCGGCTGAGCACCCGCACGCT
* * *
20752409 CGTTTCGT-GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACGGAGGG
65 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACCGGACTGAGGG
* * * *
20752473 TTGTGGCAACAAGACCGGCAGCATGCAGAG
130 TTGCGGTAGCAGGACCGGCAGCATGCAGAG
* * * * * *
20752503 GGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCTGACCGGCTCAGCGCCTGCACGCTC
1 GGGGATCGGGTCGATCCCTGACTTGCGCATTCTACCTCTCTGGCCGGCTGAGCACCCGCACGCTC
* * * * * *
20752568 GTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAATATCAAACCGGACCGAGGG
66 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCCAACCGGACTGAGGG
* * * * *
20752632 TTGCGGTAGTAGGATCGACGGCACGCAG-G
130 TTGCGGTAGCAGGACCGGCAGCATGCAGAG
* *
20752661 GGGGATCGGGTC-AGTCCCTGGCTTGCGCATTCTACCTCTCTGGCCAGCTGAGCACCCGCACGCT
1 GGGGATCGGGTCGA-TCCCTGACTTGCGCATTCTACCTCTCTGGCCGGCTGAGCACCCGCACGCT
* ** * *
20752725 TGTTTCGTGGGTTGGCTTAGGCATACATAGTTCATTCCCA-GTCTAAGATCGAACCGGACTGAGG
65 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCCAACCGGACTGAGG
*
20752789 GTTGCGGTAGCAGGACCAGCAGCAGGATTAGCAGCACACAGG
129 GTTGCGGTAGCAGGACC-G--GCAGCA-T-GCAG-----A-G
* * * *
20752831 GAGGGATCGGG-CTGATCCCCGACTTGCGCATTCTGCCTCTCTGGCAGGCTGAGCGCCCGCACGC
1 G-GGGATCGGGTC-GATCCCTGACTTGCGCATTCTACCTCTCTGGCCGGCTGAGCACCCGCACGC
* * * * * * *
20752895 TCATTTCTTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGCCCCAGCCAGACTGAGG
64 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACCGGACTGAGG
* *
20752960 GTTGTGGTAGCAGGATCGGCAG
129 GTTGCGGTAGCAGGACCGGCAG
20752982 TGGGATCAGC
Statistics
Matches: 386, Mismatches: 71, Indels: 34
0.79 0.14 0.07
Matches are distributed among these distances:
157 4 0.01
158 178 0.46
159 69 0.18
161 3 0.01
163 4 0.01
168 4 0.01
170 7 0.02
171 116 0.30
172 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
GGGGATCGGGTCGATCCCTGACTTGCGCATTCTACCTCTCTGGCCGGCTGAGCACCCGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACCGGACTGAGGGT
TGCGGTAGCAGGACCGGCAGCATGCAGAG
Found at i:20752931 original size:329 final size:316
Alignment explanation
Indices: 20752271--20752933 Score: 735
Period size: 316 Copynumber: 2.1 Consensus size: 316
20752261 CCCAGTCTAA
* *** *
20752271 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACTGAACCGAGAGTTGCAGTAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGAGTTGCAGTAACAGGATCGACA
* *
20752336 GCACGTCGAGGGGATCGGGTCGATACCCGGCTTGCGCATTCTACCTCTCGGGCCGGTTGAGCACC
66 GCACGTCGAGGGGATCGGGTCGATACCCGGCTTGCGCATTCTACCTCTCGGGCCAGCTGAGCACC
* ** *
20752401 CACATGCCCGTTTCGTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGA
131 CACACGCCCGTTTCGTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGACCCAACCGGA
* *
20752466 CGGAGGGTTGTGGCAACAAGACCGGCAGCATGCAGAGGGGGATCGGGTCGATCCCTGACTTGCGC
196 CGGAGGGTTGCGGCAACAAGACCGGCAGCATGCAGAGGGGGATCGGGTCGATCCCCGACTTGCGC
* * * *
20752531 ATTATGCCTCTCTGACCGGCTCAGCGCCTGCACGCTCGTTTTGTGGGTTGACTTAG
261 ATTATGCCTCTCTGACAGGCTCAGCGCCCGCACGCTCATTTTGTAGGTTGACTTAG
* * * * * ** *
20752587 GCATACGGAGTTCATTCCTAGTCTAATATCAAACCGGACCGAGGGTTGCGGTAGTAGGATCGACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGAGTTGCAGTAACAGGATCGACA
* *
20752652 GCACG-CAGGGGGGATCGGGTC-AGT-CCCTGGCTTGCGCATTCTACCTCTCTGGCCAGCTGAGC
66 GCACGTC-GAGGGGATCGGGTCGA-TACCC-GGCTTGCGCATTCTACCTCTCGGGCCAGCTGAGC
* ** * * *
20752714 ACCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACATAGTTCATTCCCA-GTCTAAGATCGAA
128 ACCCACACGCCCGTTTCGT-GGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGACCCAA
* * * * *
20752778 CCGGACTGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATTAGCAGCACACAGGGAGGGATCGGG-
191 CCGGACGGAGGGTTGCGGCAACAAGACC-G--GCAGCA-T-GCAG-----A-GG-GGGATCGGGT
* * *
20752842 CTGATCCCCGACTTGCGCATTCTGCCTCTCTGGCAGGCTGAGCGCCCGCACGCTCATTTCT-TAG
244 C-GATCCCCGACTTGCGCATTATGCCTCTCTGACAGGCTCAGCGCCCGCACGCTCATTT-TGTAG
*
20752906 GTTGGCTTAG
307 GTTGACTTAG
20752916 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
20752934 ATGTTTAAGC
Statistics
Matches: 286, Mismatches: 42, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
315 5 0.02
316 117 0.41
317 57 0.20
318 4 0.01
320 5 0.02
321 1 0.00
322 4 0.01
327 1 0.00
328 3 0.01
329 88 0.31
330 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (316 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGAGTTGCAGTAACAGGATCGACA
GCACGTCGAGGGGATCGGGTCGATACCCGGCTTGCGCATTCTACCTCTCGGGCCAGCTGAGCACC
CACACGCCCGTTTCGTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGACCCAACCGGA
CGGAGGGTTGCGGCAACAAGACCGGCAGCATGCAGAGGGGGATCGGGTCGATCCCCGACTTGCGC
ATTATGCCTCTCTGACAGGCTCAGCGCCCGCACGCTCATTTTGTAGGTTGACTTAG
Found at i:20752958 original size:171 final size:170
Alignment explanation
Indices: 20752652--20753112 Score: 498
Period size: 171 Copynumber: 2.7 Consensus size: 170
20752642 AGGATCGACG
* * * *
20752652 GCACGCAGGGGGGATCGGG-TCAGTCCCTGGCTTGCGCATTCTACCTCTCTGGCCA-GCTGAGCA
1 GCACGCAGGGGGGATCGGGCTGA-TCCCCGGCTTGCGCATTCTGCCTCTCTGG-CAGGCTGAGCG
** ** * *
20752715 CCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACATAGTTCATTCCCAGTCTAAGATCGAACC
64 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCCAACC
* *
20752780 GGACTGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATTAGCA
129 AGACTGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCAGCA
* *
20752822 GCACACAGGGAGGGATCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCTGGCAGGCTGAGCGC
1 GCACGCAGGG-GGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCAGGCTGAGCGC
* * * * *
20752887 CCGCACGCTCATTTCTTAGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTTTAAGCCCCAGCC
65 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGACCCAACC
* * * **
20752951 AGACTGAGGGTTGTGGTAGCAGGATCGGCAGTGGGATCAGCA
129 AGACTGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCAGCA
* ** * * * * * * * *
20752993 GCACGTAGAGGGGGA-CGAACGGATCCCCGGCTTGTGCATTATGCTTCTCCGACCGACTGAGCGC
1 GCACGCAG-GGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCAGGCTGAGCGC
* ** *
20753057 CCGCACACTCATTTCGTGGGTTTACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
65 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
20753113 CATATAGAGT
Statistics
Matches: 241, Mismatches: 44, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
170 97 0.40
171 140 0.58
172 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (170 bp):
GCACGCAGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCAGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCCAACCAG
ACTGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCAGCA
Found at i:20752962 original size:329 final size:316
Alignment explanation
Indices: 20752308--20752977 Score: 724
Period size: 329 Copynumber: 2.1 Consensus size: 316
20752298 ATTGGACTGA
* * *
20752308 ACCGAGAGTTGCAGTAACAGGATCGACAGCACGTCGAGGGGATCGGGTCGATACCCGGCTTGCGC
1 ACCGAGGGTTGCGGTAGCAGGATCGACAGCACGTCGAGGGGATCGGGTCGATACCCGGCTTGCGC
* * * **
20752373 ATTCTACCTCTCGGGCCGGTTGAGCACCCACATGCCCGTTTCGTGGTTGGCTTAGGCATAGGGAG
66 ATTCTACCTCTCGGGCCAGCTGAGCACCCACACGCCCGTTTCGTGGTTGGCTTAGGCATACAGAG
* *
20752438 TTCATTCCATGTCTAAGCCCCAACCGGACGGAGGGTTGTGGCAACAAGACCGGCAGCATGCAGAG
131 TTCATTCCATGTCTAAGACCCAACCGGACGGAGGGTTGCGGCAACAAGACCGGCAGCATGCAGAG
* * *
20752503 GGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCTGACCGGCTCAGCGCCTGCACGCTC
196 GGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCTGACAGGCTCAGCGCCCGCACGCTC
* * * * *
20752568 GTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAATATCAAACCGG
261 ATTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGACCAAACCAG
* * *
20752624 ACCGAGGGTTGCGGTAGTAGGATCGACGGCACG-CAGGGGGGATCGGGTC-AGT-CCCTGGCTTG
1 ACCGAGGGTTGCGGTAGCAGGATCGACAGCACGTC-GAGGGGATCGGGTCGA-TACCC-GGCTTG
* * **
20752686 CGCATTCTACCTCTCTGGCCAGCTGAGCACCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATAC
63 CGCATTCTACCTCTCGGGCCAGCTGAGCACCCACACGCCCGTTTCGT-GGTTGGCTTAGGCATAC
* * * * * * * *
20752751 ATAGTTCATTCCCA-GTCTAAGATCGAACCGGACTGAGGGTTGCGGTAGCAGGACCAGCAGCAGG
127 AGAGTTCATT-CCATGTCTAAGACCCAACCGGACGGAGGGTTGCGGCAACAAGACC-G--GCAGC
* *
20752815 ATTAGCAGCACACAGGGAGGGATCGGG-CTGATCCCCGACTTGCGCATTCTGCCTCTCTGGCAGG
188 A-T-GCAG-----A-GG-GGGATCGGGTC-GATCCCCGACTTGCGCATTATGCCTCTCTGACAGG
* * *
20752879 CTGAGCGCCCGCACGCTCATTTCT-TAGGTTGGCTTAGGCATACGGAGTTCATTCC-ATGTTTAA
243 CTCAGCGCCCGCACGCTCATTT-TGTAGGTTGACTTAGGCATACGGAGTTCATTCCTA-GTCTAA
* * *
20752942 GCCCCAGCCAG
306 GACCAAACCAG
* *
20752953 ACTGAGGGTTGTGGTAGCAGGATCG
1 ACCGAGGGTTGCGGTAGCAGGATCG
20752978 GCAGTGGGAT
Statistics
Matches: 290, Mismatches: 44, Indels: 27
0.80 0.12 0.07
Matches are distributed among these distances:
315 5 0.02
316 88 0.30
317 57 0.20
318 4 0.01
320 5 0.02
321 1 0.00
322 4 0.01
327 1 0.00
328 4 0.01
329 120 0.41
330 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (316 bp):
ACCGAGGGTTGCGGTAGCAGGATCGACAGCACGTCGAGGGGATCGGGTCGATACCCGGCTTGCGC
ATTCTACCTCTCGGGCCAGCTGAGCACCCACACGCCCGTTTCGTGGTTGGCTTAGGCATACAGAG
TTCATTCCATGTCTAAGACCCAACCGGACGGAGGGTTGCGGCAACAAGACCGGCAGCATGCAGAG
GGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCTGACAGGCTCAGCGCCCGCACGCTC
ATTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGACCAAACCAG
Found at i:20753598 original size:158 final size:158
Alignment explanation
Indices: 20753112--20753612 Score: 496
Period size: 159 Copynumber: 3.2 Consensus size: 158
20753102 CCCAGTCTAA
* * * * * *
20753112 GCATATAGAGTTCATTCCCA-GTCTAAGATCGGACCTGACCGAGGGTTACGACAGTAGGATCGGC
1 GCATACAGAGTTCATT-CCATGTCTAACACCAGACCAGACCGAGGGTTGCG-CAGTAGGATCGGC
* * * * *
20753176 AGCACGCAA-AGGGGACTGGGCCGATCTTCGGCTTGCGCATTTTGCCTCTCCGACCGGTTGAGCG
64 AGCACGCAAGGGGGGACTAGGCCGATCCTCGGCTTGCGCATTTTGCCTCTTCGACCGGTTGAGCA
* * *
20753240 CCTGCACGCCCGTTTGGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
20753270 GCATA-AGGAGTTCATTCAATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCAAGACCGG
1 GCATACA-GAGTTCATTCCATGTCTAA-CACCAGACCAGACCGAGGGTTG-CGCAGTAGGATCGG
* * * * * * * *
20753333 TAGCACG-TAGAGGGGGACCAAGCCAATCCTCGGCTTGCGTATTATGCCTCTTC-AGCCGGTTCA
63 CAGCACGCAAG-GGGGGACTAGGCCGATCCTCGGCTTGCGCATTTTGCCTCTTCGA-CCGGTTGA
* ** *
20753396 GCACCCGAACGCTCGTTTTATGGGTTGACTTAG
126 GCACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
20753429 GCATACGGAGTTCATTCCCA-GTCTAATACCAGACCGGACCGAGGGTTGCAGCAGTAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAACACCAGACCAGACCGAGGGTTGC-GCAGTAGGATCGGC
* * *
20753493 AGCACGCAAGGGGGGACTAGGCCGGTCCCCGACTTGC-CATTTTGCCTCTTCGACCGGTTGAGCA
64 AGCACGCAAGGGGGGACTAGGCCGATCCTCGGCTTGCGCATTTTGCCTCTTCGACCGGTTGAGCA
* *
20753557 CCCGCACGCTCGTTTCGTGGATTGGCTTAT
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
20753587 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
20753613 GCATAAGGAG
Statistics
Matches: 271, Mismatches: 58, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
157 7 0.03
158 120 0.44
159 140 0.52
160 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCATGTCTAACACCAGACCAGACCGAGGGTTGCGCAGTAGGATCGGCAG
CACGCAAGGGGGGACTAGGCCGATCCTCGGCTTGCGCATTTTGCCTCTTCGACCGGTTGAGCACC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20754326 original size:26 final size:26
Alignment explanation
Indices: 20754297--20754349 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20754287 GTTGGCTTAG
20754297 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
20754323 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
20754349 G
1 G
20754350 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:20754464 original size:710 final size:710
Alignment explanation
Indices: 20753068--20754521 Score: 1651
Period size: 710 Copynumber: 2.0 Consensus size: 710
20753058 CGCACACTCA
* *
20753068 TTTCGTGGGTTTACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATAGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAG
* * * *
20753133 TCTAAGATCGGACCTGACCGAGGGTTACGACAGTAGGATCGGCAGCACGCAAAGGGGACTGGGCC
66 TCTAAGATCGAACCTGACCGAGGGCTACGACAGCAGGATCGACAGCACGCAAAGGGGACTGGGCC
* * * * * ** * **
20753198 GATCTTCGGCTTGCGCATTTTGCCTCTCCGACCGGTTGAGCGCCTGCACGCCCGTTTGGTGGGTT
131 GATCGTCGACTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCACACACCCGTTTCATGGGTT
* * *
20753263 GGCTTAGGCATAAGGAGTTCATTCAATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAAG
196 GGCTTAGCCATAAGGAGTTCATTCAATGTCAAAGCCCCAGCCAGAACGAGGGTTGTGGCAGCAAG
* * * *
20753328 ACCGGTAGCACGTAGAGGGGGACCAAGCCAATCCTCGGCTTGCGTATTATGCCTCTTCAGCCGGT
261 ACCGATAGCACGCAGAGGGGGACCAAGCCAATCCTCGGCTTGCGCATTATGCCTCTTCAGCCGGC
*
20753393 TCAGCACCCGAACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAATAC
326 TCAGCACCCGAACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAATAC
* * * *
20753458 CAGACCGGACCGAGGGTTGCAGCAGTAGGATCGACAGCACGCAAGGGGGGACTAGGCCGGTCCCC
391 CAGACCGGACCAAGGGTTGCAGCAGCAGGATCGACA-CACACAAGGGGGGACGAGGCCGGTCCCC
* * * * *
20753523 GACTTGCCATTTTGCCTCTTCGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGATTGGCTTATG
455 GACTTACCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCTCATTTCGTGGATTGGCTTAGG
* * * *
20753588 CATACAGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCAAAGATCGGATCGGACT
520 CATACAGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCAAAGATCAGACCAGACC
* ** * *
20753653 GAGGATTACGGCAATAGGACCAGTAGTAGGATCGACAGCACGCAGTGGGGGATCAGGCTGATCAT
585 GAGGATTACGGCAATAGGACCAGCAACAGGATCGACAGCACACAGTGGGGGACCAGGCTGATCAT
** * * ** * *
20753718 CGGTTTATGCATTCTACCTCTCTTGCAGGCCTCTCCGATTGGCTGAACATCCACACGCTCG
650 CGACTTACGCATTCTACCACTCCGGCAGACCTCTCCGATCGGCTGAACATCCACACGCTCG
* *
20753779 TTTCGTGGGTTGACTTAGGCAT-CTGGAGTT-ATCCCTAGTCTAAGCATACGGAGTTCATTCCCA
1 TTTCGTGGGTTGACTTAGGCATAC-GGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCA
* * * * **
20753842 GTCTAAGAAT-GAACC-GAATCGAGGGCTGCGACAGCAGGATCGATAGCATGCAGGGGGGA-TCG
65 GTCTAAG-ATCGAACCTG-ACCGAGGGCTACGACAGCAGGATCGACAGCACGCAAAGGGGACT-G
* * *
20753904 GGCCGATCGTCGACTTGTGCATTCTACCTCTTCGGCCGGCTGAGCGCCCACACACCCGTTTCATG
127 GGCCGATCGTCGACTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCACACACCCGTTTCATG
* *
20753969 GGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCAAAGCCCCAGCC-GAAACGAGGGTTGTGGCA
192 GGTTGGCTTAGCCATAAGGAGTTCATTCAATGTCAAAGCCCCAGCCAG-AACGAGGGTTGTGGCA
*** * * * **
20754033 GTGGGATCGATAGCACGCAGAGGGGGTCCGAGCTGATCCTCGGCTTGCGCATTATGCCTCTTC-G
256 GCAAGACCGATAGCACGCAGAGGGGGACCAAGCCAATCCTCGGCTTGCGCATTATGCCTCTTCAG
** * *
20754097 ACCGGCTCAGTGCCCGAACGCTCATTTTGTGGGTTGAGTTAGGCATACGGAGTTCATTCCCAGTC
321 -CCGGCTCAGCACCCGAACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * *
20754162 TAATATCGGACTGGACCAAGGGTTGC-GATAGCAGGATCGACA-ACACATAGGGGGGACCGA-GT
385 TAATACCAGACCGGACCAAGGGTTGCAG-CAGCAGGATCGACACACACA-AGGGGGGA-CGAGGC
* * * * ** *
20754224 CGGTCCTCGACTTACGCATTCTGCCT-TTCCGGCCGGCTGAGCGCCCGTACGCTCATTTTTTGGG
447 CGGTCCCCGACTTAC-CATTCTGCCTCTT-CGACCGGCTGAGCACCCGCACGCTCATTTCGTGGA
* * * *
20754288 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATC
510 TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCAAAGATC
** * * * **
20754353 AGACCAGACCGA-GAGTTGTGGTAGTAGGACTAGCAACAGGATCGGTAGCACACAG-GGGAGGAC
575 AGACCAGACCGAGGA-TTACGGCAATAGGACCAGCAACAGGATCGACAGCACACAGTGGG-GGAC
* * * * * *
20754416 C-GAGCTGATCCTCGACTTGCGCATTCTGCCACTCCGGTC-GACCTCTCCGGTCGGCTGAGCACC
638 CAG-GCTGATCATCGACTTACGCATTCTACCACTCCGG-CAGACCTCTCCGATCGGCTGAACATC
** * *
20754479 CGTACTCCCG
701 CACACGCTCG
* * * *
20754489 TTTAGTGGGTTGCCTTAAGCATAGGGAGTTCAT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
20754522 TCCATGTCCA
Statistics
Matches: 614, Mismatches: 112, Indels: 34
0.81 0.15 0.04
Matches are distributed among these distances:
708 4 0.01
709 35 0.06
710 543 0.88
711 32 0.05
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (710 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAG
TCTAAGATCGAACCTGACCGAGGGCTACGACAGCAGGATCGACAGCACGCAAAGGGGACTGGGCC
GATCGTCGACTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCACACACCCGTTTCATGGGTT
GGCTTAGCCATAAGGAGTTCATTCAATGTCAAAGCCCCAGCCAGAACGAGGGTTGTGGCAGCAAG
ACCGATAGCACGCAGAGGGGGACCAAGCCAATCCTCGGCTTGCGCATTATGCCTCTTCAGCCGGC
TCAGCACCCGAACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAATAC
CAGACCGGACCAAGGGTTGCAGCAGCAGGATCGACACACACAAGGGGGGACGAGGCCGGTCCCCG
ACTTACCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCTCATTTCGTGGATTGGCTTAGGC
ATACAGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCAAAGATCAGACCAGACCG
AGGATTACGGCAATAGGACCAGCAACAGGATCGACAGCACACAGTGGGGGACCAGGCTGATCATC
GACTTACGCATTCTACCACTCCGGCAGACCTCTCCGATCGGCTGAACATCCACACGCTCG
Found at i:20755167 original size:171 final size:170
Alignment explanation
Indices: 20754760--20755192 Score: 530
Period size: 170 Copynumber: 2.5 Consensus size: 170
20754750 GTCGATGCTC
* * * * *
20754760 GGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGTGCCCACACGCTCATTTCATGGGTTGGCTTAG
1 GGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* *
20754825 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTACGGCAGCAAGACTAGCA
66 GCATACGGAGTTCATTCCCAGTCTAAGACTAGATCGGACCGAGGGTTACGGCAGCAAGACTAGCA
** *
20754890 GTTGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCT
131 GCGGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCT
* * *
20754930 GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTCCCCGCGCGCTCATTTCGTGGGTT-AGCTTA
1 GGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGA-CTTA
* * * * ** * *
20754994 GGCTTACGGAGTTCATT-CCATGTCTAGGCCCTAG-TCGGATCGAGGGTTGTGGCAGCAGGACTG
65 GGCATACGGAGTTCATTCCCA-GTCTAAG-ACTAGATCGGACCGAGGGTTACGGCAGCAAGACTA
* *
20755057 GCAGCGGGATCGACAGCACGTAGAGGGGGACCGGGCTGATCCCT
128 GCAGCGGGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCT
* * * * * **
20755101 GGCTTGTGCATTCTACCTCTTCAATCGGCTGAGTGCCCGTACGCTTGTTTCGTGGGTTGACTTAG
1 GGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAG
*
20755166 GCATACGGAGTTCATCCCCAGTCTAAG
66 GCATACGGAGTTCATTCCCAGTCTAAG
20755193 CATACGAAGT
Statistics
Matches: 221, Mismatches: 36, Indels: 11
0.82 0.13 0.04
Matches are distributed among these distances:
169 3 0.01
170 121 0.55
171 93 0.42
172 4 0.02
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.25
Consensus pattern (170 bp):
GGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGACTAGATCGGACCGAGGGTTACGGCAGCAAGACTAGCA
GCGGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCT
Found at i:20755195 original size:26 final size:26
Alignment explanation
Indices: 20755166--20755270 Score: 167
Period size: 26 Copynumber: 4.0 Consensus size: 26
20755156 GTTGACTTAG
*
20755166 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20755192 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
20755218 GCATACAGAGTTCATCCCCAGTCTAT
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20755244 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20755270 G
1 G
20755271 ATTGGATCGA
Statistics
Matches: 74, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
25 1 0.01
26 72 0.97
27 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20755442 original size:26 final size:26
Alignment explanation
Indices: 20755413--20755465 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20755403 TTTGGCTTAG
20755413 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20755439 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20755465 G
1 G
20755466 ATTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20756453 original size:159 final size:158
Alignment explanation
Indices: 20756200--20756661 Score: 423
Period size: 159 Copynumber: 2.9 Consensus size: 158
20756190 GACCGGATTG
* * * * * *
20756200 AGGGTTATGGCAGTAGGATCGACAGCACGCAAGGGGGATCGTGCTGATCCCCGGCTTACGAATTC
1 AGGGTTATGGCAGCAGGACCGACAACACGCAAGGGGGATCGGGCCGATCCCCGGCTTACGAATTA
* * *
20756265 TGCCTCTCCGATCGGCTAAGCACCTGCACGC-CTATTTCATGGGTTGGCTTAGGCATAGGGAGTT
66 TGCCTCTCCAATCGGCTAAGCACCTGCACGCTC-ATTTCATGGGTTGACTTAGGCATACGGAGTT
20756329 CATT-CCATGTCTAAGCCCCAGTCGGACCT
130 CATTCCCA-GTCTAAGCCCCAGTCGGACCT
* * * *
20756358 AGGGTTATGGCAGCGGGACCGATAACACGCAGAGGGGGATCGGGCCGATCCCCTGCTTACGTATT
1 AGGGTTATGGCAGCAGGACCGACAACACGCA-AGGGGGATCGGGCCGATCCCCGGCTTACGAATT
* * *
20756423 ATGCCTTTCCAATCGGCTTAA-CGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
65 ATGCCTCTCCAATCGGC-TAAGCACCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGT
** * * * **
20756487 TCATTCCCAGTCTAAG-ATCGGACCGAACGG
129 TCATTCCCAGTCTAAGCCCCAG-TCGGACCT
** * * * * * * * *
20756517 AGGGTTGCGGCAGCAGGATCGACAACA-GTAGGGGAGGATCGGGTCGGTCCCCGACTTGCGCATT
1 AGGGTTATGGCAGCAGGACCGACAACACGCAAGGG-GGATCGGGCCGATCCCCGGCTTACGAATT
* * * * ** * ** * *
20756581 CTGCCTCTCCGATCGACTGAGTGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGAAGTT
65 ATGCCTCTCCAATCGGCTAAGCACCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTT
20756646 CATT-CCATGTCTAAGC
130 CATTCCCA-GTCTAAGC
20756662 ATACAGAGTT
Statistics
Matches: 247, Mismatches: 48, Indels: 17
0.79 0.15 0.05
Matches are distributed among these distances:
157 8 0.03
158 114 0.46
159 118 0.48
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
AGGGTTATGGCAGCAGGACCGACAACACGCAAGGGGGATCGGGCCGATCCCCGGCTTACGAATTA
TGCCTCTCCAATCGGCTAAGCACCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCCCCAGTCGGACCT
Found at i:20756671 original size:26 final size:25
Alignment explanation
Indices: 20756634--20756712 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 25
20756624 GTTGGCTTAG
20756634 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACG-AGTTCATTCCATGTCTAA
20756660 GCATACAGAGTTCATTCCATGTCTAA
1 GCATAC-GAGTTCATTCCATGTCTAA
20756686 GCATACGGAGTTCATT-CATAGTCTAA
1 GCATAC-GAGTTCATTCCAT-GTCTAA
20756712 G
1 G
20756713 ATCAGACCGG
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
25 3 0.06
26 46 0.92
27 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (25 bp):
GCATACGAGTTCATTCCATGTCTAA
Found at i:20757075 original size:26 final size:26
Alignment explanation
Indices: 20757039--20757091 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20757029 GTTGACTTAG
20757039 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20757065 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20757091 G
1 G
20757092 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20757406 original size:159 final size:158
Alignment explanation
Indices: 20757065--20757564 Score: 535
Period size: 159 Copynumber: 3.2 Consensus size: 158
20757055 CCCAGTCTAA
* * **
20757065 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGG-TCGGACCGAGGGTTATGGCAGCAGGATCGAC
* * * * * * * *
20757129 AGCAC--AGAAGGTGGATCGGGCCGATCCTTGGCTTGTGCATTTTGCCTCTTCGGCCGACTGAGC
64 AGCACGTAG-AGGGGGATCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGGCTGAGC
* * *
20757192 GCCCGCACGCCCGTTTTGTGGGTTGGCTTAG
128 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * *
20757223 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTATGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCGGTCGGACCGAGGGTTATGGCAGCAGGATCGACA
* * * *
20757288 GCACGTAGAGGGGGACCGGGTCAATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGGCTTAGCAC
65 GCACGTAGAGGGGGATCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGGCTGAGCGC
* * * *
20757353 CCGAACGCTCATTTCATGGATTGACTTAG
130 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * ***
20757382 GCATACGAAGTTTATTCCCA-GTCTAAGATCGGACGGACCAAAGGTTACGATGGCAGGATCGACA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGTCGGACCGAGGGTTATGGCAGCAGGATCGACA
* * ** *
20757446 GCACGTAG-GGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCAATCGGCTGAGTGC
65 GCACGTAGAGGGGGATCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGGCTGAGCGC
20757510 CCGCACGCTCA-TTCGTGGGTTGGCTTAG
130 CCGCACGCTCATTTCGTGGGTTGGCTTAG
20757538 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
20757565 CATACAGAGT
Statistics
Matches: 279, Mismatches: 57, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
155 3 0.01
156 35 0.13
157 60 0.22
158 87 0.31
159 89 0.32
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGTCGGACCGAGGGTTATGGCAGCAGGATCGACAG
CACGTAGAGGGGGATCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:20757491 original size:157 final size:157
Alignment explanation
Indices: 20757276--20757564 Score: 411
Period size: 157 Copynumber: 1.8 Consensus size: 157
20757266 GGTTATGGCA
* * *
20757276 GCAGGATCGACAGCACGTAGAGGGGGACCGGGTCAATCCCTGGCTTGCGCATTATGCCTCTCCAG
1 GCAGGATCGACAGCACGTAGAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCAA
* *
20757341 CCGGCTTAGCACCCGAACGCTCATTTCATGGATTGACTTAGGCATACGAAGTTTATTCCCA-GTC
66 CCGGCTGAGCACCCGAACGCTCA-TTCATGGATTGACTTAGGCATACGAAGTTCATT-CCATGTC
20757405 TAAGATCGGACGGACCAAAGGTTACGATG
129 TAAGATCGGACGGACCAAAGGTTACGATG
* *
20757434 GCAGGATCGACAGCACGTAG-GGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCAA
1 GCAGGATCGACAGCACGTAGAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCAA
* ** * * * * *
20757498 TCGGCTGAGTGCCCGCACGCTCATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
66 CCGGCTGAGCACCCGAACGCTCATTCATGGATTGACTTAGGCATACGAAGTTCATTCCATGTCTA
20757563 AG
131 AG
20757565 CATACAGAGT
Statistics
Matches: 115, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
155 3 0.03
156 35 0.30
157 57 0.50
158 20 0.17
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GCAGGATCGACAGCACGTAGAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCAA
CCGGCTGAGCACCCGAACGCTCATTCATGGATTGACTTAGGCATACGAAGTTCATTCCATGTCTA
AGATCGGACGGACCAAAGGTTACGATG
Found at i:20757588 original size:26 final size:26
Alignment explanation
Indices: 20757538--20757590 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20757528 GTTGGCTTAG
* *
20757538 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
20757564 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
20757590 G
1 G
20757591 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:20757936 original size:26 final size:26
Alignment explanation
Indices: 20757906--20757958 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20757896 GTTGACTTAG
*
20757906 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20757932 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20757958 G
1 G
20757959 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20758831 original size:881 final size:870
Alignment explanation
Indices: 20756660--20759094 Score: 2619
Period size: 881 Copynumber: 2.8 Consensus size: 870
20756650 CCATGTCTAA
** *
20756660 GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCATAGTCTAAGATCAGACCGGAT
1 GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGAT
** * * * * *
20756725 CGAGGGTTGCAATAGCAGGACCAATAGCAGGATCGACAGTATGCAGGAGGGACCAGGCCGATCCC
66 CGAGGGTTGC---AGCAGGACCAGCAGCA-GATCGGCAGCACGCAGGGGGGA-CAAGCCGATCCC
* * * *
20756790 TGGCTTGCACATTCTGCCTCTTCGACCGACTGAGCGTCCGCAA-GCTCGTTTCATGGGTTGGCTT
126 TGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC-ACC-CAACGCTCGTTTCATGGGTTGGCTT
* * * * * *
20756854 AGGCATATGGAGTTCATTGCATGTCTAAGCCCAGTCGGATCGAA-GGTTGTCGCAGCAGGACCGG
189 AGGCATACGGAGTTCATTCCATGTCTAAGCCCAGCCGGA-CCAAGGGTTGTGGCAGCAAGACCGG
* * * * *
20756918 CAGTGGAATCGGCAACACGTAGAGGAGGG-CTGGGCTGATCCTCAGCTTGTGCATTATGCCTCTC
253 CAGCGGGATCGGCAGCACGTAGAGG-GGGACCGGGCTGATCCTCAGCTTATGCATTATGCCTCTC
* * * * *
20756982 CGACCGGCCTCTCTGGCCAACTGAGCGCCTGCAAGCTCGTTTCGCGGGTTGACTTAGGCATACGG
317 CG-GCGGCCTCTCTGGCCGACTGAGCGCCCGTAAGCTCGTTTCGTGGGTTGACTTAGGCATACGG
20757047 AGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTT
381 AGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTT
* * * ** * * * ** *
20757112 GTGGCAGCAGGATCGGTAGCACAG-AAGGTGGATCGGGCCGATCCTTGGCTTGTGCATTTTGCCT
446 GCGGTAGTAGGATCGACAGCAC-GCAGGGGGGACCATGCCGATCCCT-GCTTGTGCATTTTGCCT
* *
20757176 CTTCGGCCGACTGAGCGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
509 CTTCGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
* * * * *
20757241 ATGTCTAAGCCCCAG-TCGGACTGAGGGTTATGGCAGCAGGATCGACAGCACGTAGAGGGGGACC
574 ATGTCTAAGCCCCAGCT-GGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGACC
* * *
20757305 GGGTCAATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGGCTTAGCACCCGAACGCTCATTTCAT
638 AGGTCAATCCCCGGCTTGCGCATTATGCCTCTCCAGCCGGCTCAGCACCCGAACGCTCATTTCAT
* * * *
20757370 GGATTGACTTAGGCATACGAAGTTTATTCCCAGTCTAAGATCGGACGGACCAAAGGTTACGATGG
703 GGATTGACTAAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACGGACCAAAGGTTACGATAG
* * * *
20757435 CAGGATCGACAGCACGTAGGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCAATC
768 CAGAATCGACAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCCAATC
* * *
20757500 GGCTGAGTGCCCGCACGCTCATTCGTGGGTTGGCTTAG
833 GGCTGAGCGCCCACACGCTCATTCGTGGGTTGACTTAG
* * * *
20757538 GCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGAACCGGAT
1 GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGAT
* *
20757603 CGAGGGTT---G--TGA-CAGCAG--GATCGGTAGCACGCAGGGGGGACCAAGCCGATCCCTGGC
66 CGAGGGTTGCAGCAGGACCAGCAGCAGATCGGCAGCACGCAGGGGGGA-CAAGCCGATCCCTGGC
* * * * * *
20757660 TTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTTATGGGTTGGCTTAGGCA
130 TTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCC-AACGCTCGTTTCATGGGTTGGCTTAGGCA
* * * * * * *
20757725 TACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGGTGTGGTAGCAAGATCGACAACT
194 TACGGAGTTCATTCCATGTCTAAG-CCCAGCCGGACCAAGGGTTGTGGCAGCAAGACCGGCAGCG
* * * * * * * * *
20757790 GGATCGGTAGCACGTAGAGAGCGATCGGGCTGATCCTCGGCTTACGTATTATACCTCTCTGGCTG
258 GGATCGGCAGCACGTAGAGGGGGACCGGGCTGATCCTCAGCTTATGCATTATGCCTCTCCGGC-G
* ** * * * * * * * * * *
20757855 ACCTCTCCAGTCGGCTAAACGTCCATACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCA
322 GCCTCTCTGGCCGACTGAGCGCCCGTAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
20757920 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTA
387 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTA
* * * *
20757985 GTAGGATCGACAGTACGCAGGGGGGACCATGCCGTTCTCCTGCTTGCGCATTTTGCCTCTTCGAC
452 GTAGGATCGACAGCACGCAGGGGGGACCATGCCGATC-CCTGCTTGTGCATTTTGCCTCTTCGGC
* ** * * * *
20758050 TGGCTGAGCAACCGTACGCCCGTTTCATGGTTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTA
516 CGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * * * *
20758115 AACCCCAGCTAGACCGAGGGTTGTGGCAGCGGGATCGGTAGCACGCAGAGAGGGACCAGGTCGAT
581 AGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGACCAGGTCAAT
* * ** * * ** *
20758180 CCCCGGCTTGTGCATTATGCCTCTCC-GATCGGCTCAGTGCCCGAATGCTCGTTTTGTGGGTTGA
646 CCCCGGCTTGCGCATTATGCCTCTCCAG-CCGGCTCAGCACCCGAACGCTCATTTCATGGATTGA
* * * * * * *
20758244 CTAAGGCATGCGAAGTTCATTCCTAGTCTAAGATCAGATTGGATC-GAGCGTTGCGGTAGCAGAA
710 CTAAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-CGGACCAAAG-GTTACGATAGCAGAA
** * *
20758308 TCGACAGCACGCAGGGGGGACCGGGCCGGTCCCTGGCTTGCACATTCTGCCTCTCC-ACCTGGCT
773 TCGACAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCCAATC-GGCT
*
20758372 GAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
837 GAGCGCCCACACGCTC-ATTCGTGGGTTGACTTAG
* * * *
20758407 GCATACTGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAACATCAAACCAGAT
1 GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGAT
* * * *
20758472 CGAGGGTTGCGGCAGCAGGACCAGCAGCAAGAGCGGCAGCACGTAGGGGGGATCGAGCCAATCCC
66 CGAGGGTT---GCAGCAGGACCAGCAGC-AGATCGGCAGCACGCAGGGGGGA-CAAGCCGATCCC
* * * *
20758537 CGGTTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCATACGCTCATTTCCTGGGTTGGCTTA
126 TGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCA-ACGCTCGTTTCATGGGTTGGCTTA
**
20758602 GGCATACGGAGTTCATTCCATGTCTAAGCCTTGGCCGGACCAAGGGTTGTGGCAGCAAGACCGGC
190 GGCATACGGAGTTCATTCCATGTCTAAGCC-CAGCCGGACCAAGGGTTGTGGCAGCAAGACCGGC
* * * *
20758667 AGCGGGATCGACAGCACGTAGAGGGGGACCAGGTTGATCC-CTAGCTTATGCATGATGCCTCTCC
254 AGCGGGATCGGCAGCACGTAGAGGGGGACCGGGCTGATCCTC-AGCTTATGCATTATGCCTCTCC
* * * *
20758731 GGTCGGCCTCTCTGGCCGACTGAGCACCCGTATGCTCGTTTCGTGGGTTGAGTTAGGCATACAGA
318 GG-CGGCCTCTCTGGCCGACTGAGCGCCCGTAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * ** * *
20758796 GTTCATCCCC-GCTTTAAGCATGC-GAGGTTCATTCCCAGTCTAAGATCCAATCAGATCGAGGTT
382 GTTCATCCCCAG-TCTAAGCATACGGA-GTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGT
* * * * ** * * *
20758859 TGCGACT-GTAGCATCGTCTGCACGCAGGGGGGATGGGAT--CGATCCCCGGCTTGTGCATTCTA
445 TGCG-GTAGTAGGATCGACAGCACGCAGGGGGGA--CCATGCCGAT-CCCTGCTTGTGCATTTTG
* *
20758921 CCTCTCCGGCCGGCTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
506 CCTCTTCGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
* * * * * *
20758986 TCAATGTCTAAGCCCTAGCCGGATCGAGGGTTGTGGCAGTGGGATCGGCAACACGCAGAGGGGGA
571 TCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGA
* * * * *** *
20759051 CCAGGCCTATCCTCGGCTTACTTTTTCTGCCTCTCCAGCCGGCT
636 CCAGGTCAATCCCCGGCTTGCGCATTATGCCTCTCCAGCCGGCT
20759095 GAGTGCCCGC
Statistics
Matches: 1267, Mismatches: 253, Indels: 71
0.80 0.16 0.04
Matches are distributed among these distances:
864 1 0.00
865 3 0.00
866 112 0.09
867 423 0.33
868 86 0.07
869 86 0.07
870 2 0.00
872 1 0.00
875 1 0.00
877 2 0.00
878 72 0.06
880 6 0.00
881 466 0.37
882 4 0.00
883 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (870 bp):
GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGAT
CGAGGGTTGCAGCAGGACCAGCAGCAGATCGGCAGCACGCAGGGGGGACAAGCCGATCCCTGGCT
TGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCAACGCTCGTTTCATGGGTTGGCTTAGGCATA
CGGAGTTCATTCCATGTCTAAGCCCAGCCGGACCAAGGGTTGTGGCAGCAAGACCGGCAGCGGGA
TCGGCAGCACGTAGAGGGGGACCGGGCTGATCCTCAGCTTATGCATTATGCCTCTCCGGCGGCCT
CTCTGGCCGACTGAGCGCCCGTAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCC
CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGTAG
GATCGACAGCACGCAGGGGGGACCATGCCGATCCCTGCTTGTGCATTTTGCCTCTTCGGCCGGCT
GAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
CAGCTGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGACCAGGTCAATCCCCG
GCTTGCGCATTATGCCTCTCCAGCCGGCTCAGCACCCGAACGCTCATTTCATGGATTGACTAAGG
CATACGAAGTTCATTCCCAGTCTAAGATCAGACGGACCAAAGGTTACGATAGCAGAATCGACAGC
ACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCCAATCGGCTGAGCGCCCA
CACGCTCATTCGTGGGTTGACTTAG
Found at i:20759884 original size:26 final size:26
Alignment explanation
Indices: 20759855--20759907 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20759845 GTTGACTTAG
20759855 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATATGGAGTTCATTCCC-AGTCTAA
20759881 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
20759907 G
1 G
20759908 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:20762457 original size:25 final size:26
Alignment explanation
Indices: 20762423--20762474 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
20762413 GTTGACTTAG
20762423 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20762448 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20762474 G
1 G
20762475 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20762931 original size:26 final size:26
Alignment explanation
Indices: 20762901--20762953 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20762891 GTTGGCATAG
20762901 GCATACGGAGTTCATTCCACA-TCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
20762927 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20762953 G
1 G
20762954 ATCCGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20763394 original size:160 final size:156
Alignment explanation
Indices: 20763184--20763617 Score: 415
Period size: 158 Copynumber: 2.7 Consensus size: 156
20763174 CGCATTCTGC
* * * *
20763184 CTCTCCAACCGGCTAAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGTGAGTTCATT
1 CTCTCCGACCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAG-GAGTTCATT
*
20763249 CCATATCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCTGGACCGGCAGCACGTAAAGGGGGAT
65 CCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCTGGACCGGCAGCACGT-AAGGGGGAT
* *
20763314 TGGGTTGATCCCGAGGCTTGCGCATTATAA
129 CGGGTCGATCCC-AGGCTTGCGCATTAT-A
* * * *
20763344 CTCTCCGACCGGCTCAGCGCCCGTACGCTCGTTTCATGGCTTGACTTAGGCATACAGAGTTCATT
1 CTCTCCGACCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA-GGAGTTCATT
** * * * ** * * ** *
20763409 CCCA-GTCTAAGATCGAACCAGAA-TGAGGGTTACGACAG-TAGGATCGATAGCACGTAGGGGGG
65 -CCATGTCTAAGCCCCAGCC-GAACCGAGGGTTGTGGCAGCT-GGACCGGCAGCACGTAAGGGGG
* * *
20763471 ATCGGGTCGGTCCCCGGCTTGCGCATTCTA
127 ATCGGGTCGATCCCAGGCTTGCGCATTATA
* * * * * *
20763501 CTTCTCCGACCGGCTGAGCGCCTGCACGCTTGTTTCGTGGGTTGCCTTAGGCATACGAAGTTCAT
1 C-TCTCCGACCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA-GGAGTTCAT
* ** * * *
20763566 TTCATGTCTAAGCCCCAGTTGGACCGAAGGTTGTGGCAGCAGGACCGGCAGC
64 TCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCTGGACCGGCAGC
20763618 GGGATCAATA
Statistics
Matches: 214, Mismatches: 52, Indels: 18
0.75 0.18 0.06
Matches are distributed among these distances:
157 6 0.03
158 95 0.44
159 18 0.08
160 89 0.42
161 6 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
CTCTCCGACCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAGGAGTTCATTC
CATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCTGGACCGGCAGCACGTAAGGGGGATCG
GGTCGATCCCAGGCTTGCGCATTATA
Found at i:20764260 original size:26 final size:26
Alignment explanation
Indices: 20764210--20764262 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20764200 GTTGGCTTAG
*
20764210 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
20764236 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
20764262 G
1 G
20764263 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:20764317 original size:24 final size:24
Alignment explanation
Indices: 20764286--20764339 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
20764276 GAGGGTTGTG
20764286 GCAGCAGGACCAGCAGCAGGATCA
1 GCAGCAGGACCAGCAGCAGGATCA
20764310 GCAGCAGGACCAGCAGCAGGATCA
1 GCAGCAGGACCAGCAGCAGGATCA
*
20764334 ACAGCA
1 GCAGCA
20764340 TACAGTGGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.35, C:0.30, G:0.31, T:0.04
Consensus pattern (24 bp):
GCAGCAGGACCAGCAGCAGGATCA
Found at i:20764339 original size:12 final size:12
Alignment explanation
Indices: 20764286--20764330 Score: 81
Period size: 12 Copynumber: 3.8 Consensus size: 12
20764276 GAGGGTTGTG
20764286 GCAGCAGGACCA
1 GCAGCAGGACCA
*
20764298 GCAGCAGGATCA
1 GCAGCAGGACCA
20764310 GCAGCAGGACCA
1 GCAGCAGGACCA
20764322 GCAGCAGGA
1 GCAGCAGGA
20764331 TCAACAGCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.33, C:0.29, G:0.36, T:0.02
Consensus pattern (12 bp):
GCAGCAGGACCA
Found at i:20765960 original size:26 final size:26
Alignment explanation
Indices: 20765930--20765982 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20765920 GTTGGCTTAG
* *
20765930 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATCGACTTCATCCCCAGTCTAA
*
20765956 GCATATCGACTTCATTCCCAGTCTAA
1 GCATATCGACTTCATCCCCAGTCTAA
20765982 G
1 G
20765983 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATATCGACTTCATCCCCAGTCTAA
Found at i:20766427 original size:158 final size:160
Alignment explanation
Indices: 20766044--20766443 Score: 420
Period size: 159 Copynumber: 2.5 Consensus size: 160
20766034 CCTGCTTATG
* * * * *
20766044 CATTCTGCCTCTCTGA-TCGGCTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTTGGCATAGG
1 CATTCTGCCTCTCTGACT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* **
20766108 GAGTTCATT-CAATGTCTAAGCCCCAGGTGGACCGAGGGTTGTGGCAGAGGGATCGACAGCACGC
65 GAGTTCATTCCAATGTCTAAGCACCAGCCGGACCGAGGGTTGTGGCAGAGGGATCGACAGCACGC
** * * *
20766172 AGAGGGGGATTAGGCCGATCCCCGGCTTGCG
130 AGAGGGGGACCAGGCCAATCCCCGACTTGCA
* * * * *
20766203 CATTATGCCTCT-TCGGCCGGCTCAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACG
1 CATTCTGCCTCTCT-GACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* ** * * *
20766267 GAGTTCATTCCCA-GTCTAAG-ATTAGACCGGACCGAGGGTTGTGGTAGCA-GGATGGGCAGCAC
65 GAGTTCATTCCAATGTCTAAGCACCAG-CCGGACCGAGGGTTGTGGCAG-AGGGATCGACAGCAC
* *
20766329 GCAG-GGGGGACCAGGTCAATCCTCGACTTGCA
128 GCAGAGGGGGACCAGGCCAATCCCCGACTTGCA
* * ** *
20766361 CATTCTGCCTCTCTGACTGGCTGAGCCCCCGCACGCTCGTTTCATGGGTTCTCTTAGGCATTCGG
1 CATTCTGCCTCTCTGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
20766426 AGTTCATT-CTATGTCTAA
66 AGTTCATTCCAATGTCTAA
20766444 TCCCCTGTCG
Statistics
Matches: 197, Mismatches: 37, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
157 2 0.01
158 91 0.46
159 101 0.51
160 3 0.02
ACGTcount: A:0.17, C:0.28, G:0.30, T:0.24
Consensus pattern (160 bp):
CATTCTGCCTCTCTGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTCCAATGTCTAAGCACCAGCCGGACCGAGGGTTGTGGCAGAGGGATCGACAGCACGCA
GAGGGGGACCAGGCCAATCCCCGACTTGCA
Found at i:20766474 original size:158 final size:158
Alignment explanation
Indices: 20766044--20766484 Score: 419
Period size: 158 Copynumber: 2.8 Consensus size: 158
20766034 CCTGCTTATG
* * * * *
20766044 CATTCTGCCTCTCTGA-TCGGCTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTTGGCATAGG
1 CATTCTGCCTCTCTGACT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
*
20766108 GAGTTCATTCAATGTCTAAGCCCCAGGT-GGACCGAGGGTTGTGGCAG-AGGGATCGACAGCACG
65 GAGTTCATTCAATGTCTAA-CCCC-TGTCGGACCGAGGGTTGTGGCAGCA-GGATCGACAGCACG
** * * *
20766171 CAGAGGGGGATTAGGCCGATCCCCGGCTTGCG
127 CAGAGGGGGACCAGGCCAATCCCCGACTTGCA
* * * * *
20766203 CATTATGCCTCT-TCGGCCGGCTCAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACG
1 CATTCTGCCTCTCT-GACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *** * * * *
20766267 GAGTTCATTCCCA-GTCTAA-GATTAGACCGGACCGAGGGTTGTGGTAGCAGGATGGGCAGCACG
65 GAGTTCATT-CAATGTCTAACCCCT-G-TCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACG
* *
20766330 CAG-GGGGGACCAGGTCAATCCTCGACTTGCA
127 CAGAGGGGGACCAGGCCAATCCCCGACTTGCA
* * ** *
20766361 CATTCTGCCTCTCTGACTGGCTGAGCCCCCGCACGCTCGTTTCATGGGTTCTCTTAGGCATTCGG
1 CATTCTGCCTCTCTGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * * *
20766426 AGTTCATTCTATGTCTAATCCCCTGTCGAAACGAGGGTTATAGCAGCAGGACCGACAGC
66 AGTTCATTCAATGTCTAA-CCCCTGTCGGACCGAGGGTTGTGGCAGCAGGATCGACAGC
20766485 GGGATCGACA
Statistics
Matches: 222, Mismatches: 49, Indels: 23
0.76 0.17 0.08
Matches are distributed among these distances:
157 3 0.01
158 114 0.51
159 101 0.45
160 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
CATTCTGCCTCTCTGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTCAATGTCTAACCCCTGTCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGA
GGGGGACCAGGCCAATCCCCGACTTGCA
Found at i:20767120 original size:26 final size:26
Alignment explanation
Indices: 20767070--20767122 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20767060 GTTGGCTTAG
*
20767070 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
20767096 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
20767122 G
1 G
20767123 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:20767853 original size:159 final size:158
Alignment explanation
Indices: 20767476--20767903 Score: 438
Period size: 159 Copynumber: 2.7 Consensus size: 158
20767466 CCTGTTCTAA
* *** * *
20767476 GCATACGGAGTTCATTCTCAGTCTAAGATTGGA-CAAGACCGAGGGTTGTGACAGTAAGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGATC-AGACCGAGGGTTGTGACAGTAGGATCGAC
* * * * * * *
20767540 AGCACGCAGGGGGGATC-GAGCCGATCCACGGCTTGCGCATTCTACCTCTCTGGTCGGCTGAGCA
65 AGCACGCAGGGGGGACCAG-GTCGATCCCCGGCTTGCGCATTATACCTCTCTGGCCAGCTCAGCA
***
20767604 CCCACACGTCCGTTTCATGGGTTGGCTTAG
129 CCCACACGTCAAATTCATGGGTTGGCTTAG
* * * **
20767634 GCATA-GGTAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCAAGGGTTGTGACAGCGGGATCG
1 GCATACGG-AGTTCATTCCCA-GTCTAAG-ACCAGATCAGACCGAGGGTTGTGACAGTAGGATCG
* * * *
20767696 ACAGCACGCAGAGGGGACCAGGTTGATCCCCGGCTTGTGCATTATACCTCTCTGGCCAGCTCAGT
63 ACAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTATACCTCTCTGGCCAGCTCAGC
*
20767761 GCCCGA-ACGATCAAATTCATGGGTTGGCTTAG
128 ACCC-ACACG-TCAAATTCATGGGTTGGCTTAG
* * * *
20767793 GCATACGGAGTTCATTCCCAGTCTAAGAGCAGATCAGATCGAGGGTTGTGGCAATAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGATCAGACCGAGGGTTGTGACAGTAGGATCGACA
* * *
20767858 GGACGCAGGGGGGATCCA-GTCGATCCCCGGCTTACGCATTCTACCT
66 GCACGCAGGGGGGA-CCAGGTCGATCCCCGGCTTGCGCATTATACCT
20767904 TTCCAACTGG
Statistics
Matches: 218, Mismatches: 41, Indels: 21
0.78 0.15 0.08
Matches are distributed among these distances:
157 4 0.02
158 102 0.47
159 104 0.48
160 8 0.04
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGATCAGACCGAGGGTTGTGACAGTAGGATCGACA
GCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTATACCTCTCTGGCCAGCTCAGCACC
CACACGTCAAATTCATGGGTTGGCTTAG
Found at i:20767988 original size:26 final size:26
Alignment explanation
Indices: 20767952--20768002 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20767942 TTGACTTAGG
20767952 CATACAGAGTTCATCCCCAATCTAAC
1 CATACAGAGTTCATCCCCAATCTAAC
* *
20767978 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATCCCCAATCTAA
20768003 GATCAGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.31, G:0.10, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAATCTAAC
Found at i:20768371 original size:501 final size:501
Alignment explanation
Indices: 20767422--20768536 Score: 1215
Period size: 501 Copynumber: 2.2 Consensus size: 501
20767412 GCTGAGCCCT
*** * *
20767422 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTGTTCTAAGCATACGGAGT
1 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAACCATACAGAGT
* ** * * * * * *
20767487 TCATTCTCAGTCTAAGATTGGACAAGACCGAGGGTTGTGACAGTAAGATCGGCAGCACGCAGGGG
66 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAACACGCAGGGG
* * * *
20767552 GGATCGAGCCGATCCACGGCTTGCGCATTCTACCTCTCTGGTCGGCTGAGCACCCACACGTCCGT
131 GGACCGAGCCGATCCACGACTTGCGCATTCTACCTCTCTGGCCGGCTGAGCACCCACACGCCCGT
* * ** * *
20767617 TTCATGGGTTGGCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTG
196 TTCATGGGTTGGCTTAGACAAAGGTAGTTCATTCCATGTCTAAGCCCCAACCGGAACAAGGGTTA
* * *
20767682 TGACAGCGGGATCGACAGCACGCAGAGGGGACCAGGTTGATCCCCGGCTTGTGCATTATACCTCT
261 TGACAGCGGGACCAACAGCACGCAGAGGGGACCAGGTTGATCCCCGGCTTGCGCATTATACCTCT
** *
20767747 CTGGCCAGCTCAGTGCCCGAACGATCAAATTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCC
326 CTGGCCAGCTCAACGCCCGAACGATCAAATTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * * * *
20767812 AGTCTAAGAGCAGATCAGATCGAGGGTTGTGGCAATAGGATCGACAGGACGCAGGGGGG-ATCCA
391 AGTCTAAGAGCAGACCAGACCGAGGGTTATGGCAACAGGATCGACAGCACACAGGGGGGAAT-CA
* * *
20767876 GTC-GATCCCCGGCTTAC-GCATTCTACCTTTCCAACTGGCTGAACACC
455 GGCAGATCCCC-GCTT-CTGCATTCTACCTCTCCAACCGGCTGAACACC
* *
20767923 CGCACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAACCATACAGAGT
1 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAACCATACAGAGT
* * * * *
20767988 TCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGATAACTCGCAGGGG
66 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAACACGCAGGGG
* * * * * *
20768053 GGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCT-TCGGCCGGTTGAGCGCTCACACGCCCG
131 GGACCGAGCCGATCCACGACTTGCGCATTCTACCTCTCT-GGCCGGCTGAGCACCCACACGCCCG
**
20768117 TTTCATGGGTTGGCTTAGACGAAAGG-AGTTCATTCCATGTCTAAGCCCCAACCGGAATGAGGGT
195 TTTCATGGGTTGGCTTAGAC-AAAGGTAGTTCATTCCATGTCTAAGCCCCAACCGGAACAAGGGT
* * * * * *
20768181 TATGGCAGCGGGACCAACAGCAGGTAGAGGGGGACCGGGTTGATCCCCGGCTTGCGCCTTATGCC
259 TATGACAGCGGGACCAACAGCACGCAGA-GGGGACCAGGTTGATCCCCGGCTTGCGCATTATACC
* * * * * ** * *
20768246 TAT-TCGGTCGGCTCAACGCCCGTACGCTC-GTTTCATGGGTTGACTTAGGCTTATGG-GATTCA
323 TCTCT-GGCCAGCTCAACGCCCGAACGATCAAATTCATGGGTTGACTTAGGCATACGGAG-TTCA
* * * * * *
20768308 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGTAGCAGGATCGACAGCACATAGGGGGGA
386 TTCCCAGTCTAAGAGCAGACCAGACCGAGGGTTATGGCAACAGGATCGACAGCACACAGGGGGGA
* * * * * ** * * *
20768373 ATCGGGCAGGTCCTCGCTTCTGCATTTTGCCTCTCCGGCCGGCTGAGCGCT
451 ATCAGGCAGATCCCCGCTTCTGCATTCTACCTCTCCAACCGGCTGAACACC
* * * * *
20768424 CGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCT-ACGCATACAGA
1 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-ATCTAAC-CATACAGA
* * * * *
20768487 GTTCATTCCTAGTCTAACATCAGATCTGATCGAGGGTTGCGACAGCAGGA
64 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGA
20768537 CCAGCAGCAG
Statistics
Matches: 505, Mismatches: 99, Indels: 20
0.81 0.16 0.03
Matches are distributed among these distances:
500 8 0.02
501 434 0.86
502 63 0.12
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (501 bp):
CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAACCATACAGAGT
TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAACACGCAGGGG
GGACCGAGCCGATCCACGACTTGCGCATTCTACCTCTCTGGCCGGCTGAGCACCCACACGCCCGT
TTCATGGGTTGGCTTAGACAAAGGTAGTTCATTCCATGTCTAAGCCCCAACCGGAACAAGGGTTA
TGACAGCGGGACCAACAGCACGCAGAGGGGACCAGGTTGATCCCCGGCTTGCGCATTATACCTCT
CTGGCCAGCTCAACGCCCGAACGATCAAATTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
AGTCTAAGAGCAGACCAGACCGAGGGTTATGGCAACAGGATCGACAGCACACAGGGGGGAATCAG
GCAGATCCCCGCTTCTGCATTCTACCTCTCCAACCGGCTGAACACC
Found at i:20768476 original size:158 final size:157
Alignment explanation
Indices: 20767978--20768469 Score: 472
Period size: 159 Copynumber: 3.1 Consensus size: 157
20767968 CCAATCTAAC
* * ** * *
20767978 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGATAA
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCAGGATCGACAG
* * * * *
20768043 CTCGCAGGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTTCGGCCGGTTGAGCGCTC
66 CACGTAGGGGGGACCGGGCAGATCCTCG-CTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGCTC
** * *
20768108 ACACGCCCGTTTCATGGGTTGGCTTAGA
130 GTACGCTCGTTTCATGGGTTGGCTTAGG
* ** ** * * *
20768136 CGA-AAGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGAATGAGGGTTATGGCAGCGGGACCAA
1 C-ATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTATGGCAGCAGGATCGA
* ** * * * * * *
20768198 CAGCAGGTAGAGGGGGACCGGGTTGATCCCCGGCTTGCGCCTTATGCCTATTCGGTCGGCTCAAC
63 CAGCACGTAG-GGGGGACCGGGCAGATCCTC-GCTTGCGCATTATGCCTCTTCGGCCGGCTGAGC
* *
20768263 GCCCGTACGCTCGTTTCATGGGTTGACTTAGG
126 GCTCGTACGCTCGTTTCATGGGTTGGCTTAGG
* * * *
20768295 CTTATGG-GATTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGTAGCAGGATCGACA
1 CATACGGAG-TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCAGGATCGACA
* * * * *
20768359 GCACATAGGGGGGAATCGGGCAGGTCCTCGCTT-CTGCATTTTGCCTCTCCGGCCGGCTGAGCGC
65 GCACGTAGGGGGG-ACCGGGCAGATCCTCGCTTGC-GCATTATGCCTCTTCGGCCGGCTGAGCGC
*
20768423 TCGTACGCTCGTTTCGTGGGTTGGCTTAGG
128 TCGTACGCTCGTTTCATGGGTTGGCTTAGG
20768453 CATACGGAGTTCATTCC
1 CATACGGAGTTCATTCC
20768470 ATGTCTACGC
Statistics
Matches: 259, Mismatches: 63, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 4 0.02
158 119 0.46
159 132 0.51
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCAGGATCGACAG
CACGTAGGGGGGACCGGGCAGATCCTCGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGCTCG
TACGCTCGTTTCATGGGTTGGCTTAGG
Found at i:20770052 original size:158 final size:156
Alignment explanation
Indices: 20769615--20770105 Score: 438
Period size: 158 Copynumber: 3.1 Consensus size: 156
20769605 CTAGACCAAT
* * * *
20769615 GGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGACCGGATCGATCCTCGGCTTGTGCATTTTG
1 GGTTGCGGTAGCAGGATCGACAGCACG-AAGGGGGACCGGATCGATCC-CTGCTTGTGCATTATG
* * * * *
20769680 CCTCTCCGGCCGGCTGAGCA-CCCGCACACCCATTTTTTGGGTTGGCTTAGGCATAGGGAGTTCA
64 CCTCTCCGACCGGCTGAG-AGCCCGCACACTCATTTTATGGGTTGGCTTAGGCATACGAAGTTCA
* *
20769744 TTCCATGTCTAAGCCCCAGCCGTACCGAA
128 TTCCATGTCTAAGCACCAGCCGAACCGAA
* * ** *
20769773 GGTTGTGGTAGCGGGATCGGTAGCACGCAAAGGGGGACC-GACTCGATCCCCTGCTTGCGCATTA
1 GGTTGCGGTAGCAGGATCGACAGCACG--AAGGGGGACCGGA-TCGAT-CCCTGCTTGTGCATTA
* * * * * * * * * *
20769837 TGCCTCTTC-AGTCAGCTCAGTGCCCGAACGCTCATTTCATTGGTTGACTTAGGCATACGAAGTT
62 TGCCTCTCCGA-CCGGCTGAGAGCCCGCACACTCATTTTATGGGTTGGCTTAGGCATACGAAGTT
* * *
20769901 TATTCCCA-GTCTAAG-ATCAGACCGAATCGAA
126 CATT-CCATGTCTAAGCACCAG-CCGAACCGAA
** * * * *
20769932 GGTTGCGGTAGCAGGATCGACAGCACGTTGGAGGGATCGGGTCGGTCCCTAGCTTGTGCATTCTG
1 GGTTGCGGTAGCAGGATCGACAGCACGAAGG-GGGACCGGATCGATCCCT-GCTTGTGCATTATG
* *
20769997 CCTCTCCGACCGGCTGAGAGCCCGCACACTCATTTTGTGGGCTGGCTTAGGCATAC-AGAGTTCA
64 CCTCTCCGACCGGCTGAGAGCCCGCACACTCATTTTATGGGTTGGCTTAGGCATACGA-AGTTCA
* * *
20770061 TTCCATGTCTAAGC-CCTAGTCGGACCGAG
128 TTCCATGTCTAAGCACC-AGCCGAACCGAA
*
20770090 GGTTGTGGTAGCAGGA
1 GGTTGCGGTAGCAGGA
20770106 CTGGCAGCGA
Statistics
Matches: 258, Mismatches: 60, Indels: 30
0.74 0.17 0.09
Matches are distributed among these distances:
157 10 0.04
158 126 0.49
159 117 0.45
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
GGTTGCGGTAGCAGGATCGACAGCACGAAGGGGGACCGGATCGATCCCTGCTTGTGCATTATGCC
TCTCCGACCGGCTGAGAGCCCGCACACTCATTTTATGGGTTGGCTTAGGCATACGAAGTTCATTC
CATGTCTAAGCACCAGCCGAACCGAA
Found at i:20771132 original size:368 final size:363
Alignment explanation
Indices: 20769897--20771192 Score: 1237
Period size: 368 Copynumber: 3.6 Consensus size: 363
20769887 AGGCATACGA
* * * * ** *
20769897 AGTTTATTCCCAGTCTAAGATCAGACCGAATCGAAGGTTGCGGTAGCAGGATCGACAGCACGTTG
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGTAG
* * * ** *
20769962 GAGGGATCGGGTCGGTCCCTAGCTTGTGCATTCTGCCTCTCCGACCGGCTGAG-AGCCCGCACAC
66 GAGGGACCGGGCCGATCCCCGGCTTGTACATTCTGCCTCTCCGACCGGCTGAGCA-CCCGCACAC
* * * * * ** *
20770026 TCATTTTGTGGGCTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGG
130 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGG
* * * * * *
20770091 GTTGTGGTAGCAGGACTGGCAGCGAGATTGACAACACACAGAGGGGGACCGGGCTGATCCCTGGC
195 GTTGTGGCAG-AGGAC-GACAG-GAGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGC
* ** *
20770156 TTGCATATTATGCCTCTTCGGCCGACCTCTCCAGTCGGTTGAG-AGCCTGCACGCTCATTTCATG
257 TTGCGTATTATGCCTCTTCGGCCGACCT-TCCA-TCGGTTGAGCA-CCCACACGCTCGTTTCATG
* *
20770220 GGTTGACTTAGGCATACGGAGTTTATCCCCAATGTAAGCATATGG
319 GGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATATGG
* * * * * *
20770265 AGTTCCTTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGAAAGATTGACAGCATGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGTAG
* * ** ** * *
20770330 GAGGGACTGGGCCGTTCCTTGGCTTACACATTCTGCCTCTTCGACCAGCTGAGCACCCGCACGA-
66 GAGGGACCGGGCCGATCCCCGGCTTGTACATTCTGCCTCTCCGACCGGCTGAGCACCCGCAC-AC
* * *
20770394 TCGTTTCGTGGGTTGGCTTAGGCATAGGGGGTTCATTCCATGTCTAAGCCCCAACCAAACCGAGG
130 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGG
* * *
20770459 GTTGTGGC-----A--ACA-G-GATCGACAGCACGCAGAGGTGGATCGGG-TCGATCCCCGACTT
195 GTTGTGGCAGAGGACGACAGGAGATCGACAGCACGCAGAGGGGGACCGGGCT-GATCCCCGGCTT
* * * *
20770514 GCGCATTATGCCTC-TCAGGTCGA-C-T-CA---G-T--GC-CCGA-AAGCTCGTTTCATGGGTT
259 GCGTATTATGCCTCTTC-GGCCGACCTTCCATCGGTTGAGCACCCACACGCTCGTTTCATGGGTT
* * * * *
20770567 GACTTAGGCATCCAGAGTTCAT-TCCATGTCTGAGCATATGG
323 GACTTAGGCATACGGAGTTCATCCCCA-ATCTAAGCATATGG
* * * *
20770608 AGTTCATTCCTAGTCTAAGATCAGATCAGACTGAGGGTTGCCGCAGTAGGACCAGCAGCAGGATC
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT---GC-----G---A-CAGCAGGATC
* * * * * *
20770673 GACAGCACGTAAGAGGGGACAGGGTCGATCCTCGACTTGTACATTCTGCCTCTCCGACTGGCTGA
54 GACAGCACGTAGGA-GGGACCGGGCCGATCCCCGGCTTGTACATTCTGCCTCTCCGACCGGCTGA
*
20770738 GCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCCCCA
118 GCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
* * *
20770803 ACCGAACCGAAGGTTGTGGCAGTAGGATCGACAGTGAGATCGGCAGCACGTAGAGGGGGACCGGG
183 ACCGAACCGAGGGTTGTGGCAG-AGGA-CGACAG-GAGATCGACAGCACGCAGAGGGGGACCGGG
* *
20770868 CTGATCCCCGGCTTACGTATTATGCCTCTTCGGCCAACCTTTCCGATCGGTTGAGCACCCACACG
245 CTGATCCCCGGCTTGCGTATTATGCCTCTTCGGCCGACC-TTCC-ATCGGTTGAGCACCCACACG
* * * *
20770933 TTCGTTTCGTGTGG-TAACTTAGGCATATGGAGTTCATCCCCAATCTAAGCATATGG
308 CTCGTTTCATG-GGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATATGG
* * * *
20770989 AGTTCATTTCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCAGGATCGATAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGTAG
* ** *
20771054 GGGGGACCGAACCGATCCCCGGCTTGTACATTCTGCCTCTCC-AGCCGGCTGAGCACCCGTACAC
66 GAGGGACCGGGCCGATCCCCGGCTTGTACATTCTGCCTCTCCGA-CCGGCTGAGCACCCGCACAC
* * * * * *
20771118 CCGTTTCATGGGTTGGCTTAGGCATAGGGATTTCATTTCATGTCTAAGCCCCAGCC-AGACCGAG
130 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGA-ACCGAG
20771182 GGTTGTGGCAG
194 GGTTGTGGCAG
20771193 CAGCCACGGT
Statistics
Matches: 747, Mismatches: 130, Indels: 102
0.76 0.13 0.10
Matches are distributed among these distances:
342 3 0.00
343 80 0.11
344 2 0.00
345 1 0.00
346 2 0.00
347 1 0.00
348 1 0.00
351 1 0.00
352 2 0.00
353 1 0.00
354 1 0.00
355 23 0.03
356 168 0.22
357 1 0.00
359 2 0.00
362 2 0.00
365 3 0.00
367 3 0.00
368 330 0.44
369 27 0.04
370 1 0.00
371 1 0.00
372 1 0.00
373 2 0.00
376 1 0.00
377 1 0.00
378 2 0.00
379 2 0.00
380 3 0.00
381 74 0.10
382 5 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (363 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGTAG
GAGGGACCGGGCCGATCCCCGGCTTGTACATTCTGCCTCTCCGACCGGCTGAGCACCCGCACACT
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGG
TTGTGGCAGAGGACGACAGGAGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGC
GTATTATGCCTCTTCGGCCGACCTTCCATCGGTTGAGCACCCACACGCTCGTTTCATGGGTTGAC
TTAGGCATACGGAGTTCATCCCCAATCTAAGCATATGG
Found at i:20771322 original size:159 final size:159
Alignment explanation
Indices: 20770989--20771505 Score: 402
Period size: 159 Copynumber: 3.3 Consensus size: 159
20770979 AAGCATATGG
* * * ** * * * **
20770989 AGTTCATTTCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCAGGATCGATAGCAC-GTA
1 AGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTGCGGCAGCAGCATCGACAGCACACAA
* * * * ** * * * * * ** * *
20771053 GGGGGGACCGAACCGATCCCCGGCTTGTACATTCTGCCTCTCCAGCCGGCTGAGCACCCGTACAC
66 GGAGGGACCGAGCCGATCCCAGACTTGCGCATTATACCTCTCCGGTCGACTGAGTGCCCGAACGC
* * * * *
20771118 CCGTTTCATGGGTTGGCTTAGGCATAGGG
131 TCATTTCATGGGTTGACTTAGGCATACGA
* * * * ** *
20771147 ATTTCATT-TCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCAGCCA-CGGTAGCATA
1 AGTTCATTCCCA-GTCTAAG-ACCAGACCAGACCGAGGGTTGCGGCAGCAG-CATCGACAGCACA
* * * *
20771209 CAGAGG-GGGACCGAGTCGATCCTC-GACTTGTGCATTATGCCTCTCCGAG-C-AGCTTAGTGCC
63 CA-AGGAGGGACCGAGCCGATCC-CAGACTTGCGCATTATACCTCTCCG-GTCGA-CTGAGTGCC
20771270 CGAACGCTCATTTCATGGGTTGACTTAGGCATACGA
124 CGAACGCTCATTTCATGGGTTGACTTAGGCATACGA
* * * * * *
20771306 AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGTAGGATCGACAGCACCCAA
1 AGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTGCGGCAGCAGCATCGACAGCACACAA
* * * * * *
20771371 GGAGGGACCGGGCCGGTCCCAGGCTTGCGTATTCTACCTCTCCGGTCGACTGAGTGCCCGCACGC
66 GGAGGGACCGAGCCGATCCCAGACTTGCGCATTATACCTCTCCGGTCGACTGAGTGCCCGAACGC
*
20771436 TCATTTCGTGGGTTGACTTAGGCATACGA
131 TCATTTCATGGGTTGACTTAGGCATACGA
* * *
20771465 AGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGC
1 AGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTGC
20771506 AACAACAAGA
Statistics
Matches: 285, Mismatches: 59, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
157 2 0.01
158 50 0.18
159 225 0.79
160 8 0.03
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (159 bp):
AGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTGCGGCAGCAGCATCGACAGCACACAA
GGAGGGACCGAGCCGATCCCAGACTTGCGCATTATACCTCTCCGGTCGACTGAGTGCCCGAACGC
TCATTTCATGGGTTGACTTAGGCATACGA
Found at i:20771518 original size:159 final size:158
Alignment explanation
Indices: 20771264--20771643 Score: 429
Period size: 158 Copynumber: 2.4 Consensus size: 158
20771254 CGAGCAGCTT
* *
20771264 AGTGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCA
1 AGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCA
** * * ** ** * *
20771329 GACCGGATCGAGGGTTGCGGCAGTAGGATCGACAGCACCCAAGGAGGGACCGGGCCGGTCCC-AG
66 GACCAAACCAAGGGTTGCAACAACAAGATCGACAGCA-CCAAGGAGGGACCAGGCCGGTCCCTA-
*
20771393 GCTTGCGTATTCTACCTCTCCGGTCGACTG
129 GCTTGCGCATTCTACCTCTCCGGTCGACTG
20771423 AGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCA
1 AGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCA
* ** * * *
20771488 GACCAAACCAAGGGTTGCAACAACAAGATCGACGGCACGTAGGGGGGACTAGGCTGGTCCCTAGC
66 GACCAAACCAAGGGTTGCAACAACAAGATCGACAGCACCAAGGAGGGACCAGGCCGGTCCCTAGC
* * ** * **
20771553 TTGTGCATTCTGCCTCTTTGGTTGGTTG
131 TTGCGCATTCTACCTCTCCGGTCGACTG
* * * * * * * *
20771581 AGAGTCGGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTTAGAT
1 AGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
20771644 TTTGAGCCAC
Statistics
Matches: 186, Mismatches: 34, Indels: 3
0.83 0.15 0.01
Matches are distributed among these distances:
158 95 0.51
159 91 0.49
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (158 bp):
AGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCA
GACCAAACCAAGGGTTGCAACAACAAGATCGACAGCACCAAGGAGGGACCAGGCCGGTCCCTAGC
TTGCGCATTCTACCTCTCCGGTCGACTG
Found at i:20772341 original size:26 final size:26
Alignment explanation
Indices: 20772311--20772363 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20772301 GTTAACTTAG
20772311 GCATACAGAGTTCA-TCCCCAGTCTAA
1 GCATACAGAGTTCACT-CCCAGTCTAA
* *
20772337 GCATACGGAGTTCACTCTCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
20772363 G
1 G
20772364 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:20778445 original size:26 final size:26
Alignment explanation
Indices: 20778409--20778461 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20778399 TTGGCTTTAG
20778409 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
20778435 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
20778461 G
1 G
20778462 ATCAGACCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:20778648 original size:26 final size:26
Alignment explanation
Indices: 20778611--20778664 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
20778601 TTTGACTTAG
* *
20778611 GCATACGGAGTTCA-TCCGTAGTCTAA
1 GCATACGAAGTTCATTCC-CAGTCTAA
20778637 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20778663 GC
1 GC
20778665 TCGGACTGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20779091 original size:158 final size:157
Alignment explanation
Indices: 20778637--20779138 Score: 532
Period size: 159 Copynumber: 3.2 Consensus size: 157
20778627 CGTAGTCTAA
* * * * *
20778637 GCATACGAAGTTCATTCCCAGTCTAAGCTCGGACTGGACCGAGGGTTACGGCAGTAGGATTGGA-
1 GCATACGGAGTTCATTCCCAGTCTAAGCTCAGAC-GGACCGAGGGTTGCGGCAGCAGGA-TCGAC
* * ** * * * *
20778701 AGCACGCA-GGGCGACCGGGTTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCAC
64 AGCACGCAGGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGC
* *
20778765 CTGCACG-TCCGTTTCATGGGTTGGCTTAG
129 CCGCACGCT-CGTTTCGTGGGTTGGCTTAG
* * * * * * * * *
20778794 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGTAGCAGGACCGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-CTCAGACGGACCGAGGGTTGCGGCAGCAGGATCGAC
* ** *
20778858 AGCACGCAGAGGGGGACCAGGCCGAT-CCTCGGCTTGCGCATTATGCCTCT-TCGATCGGCTCAG
64 AGCACGCAG-GGGGGACCAGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCT-GGCCGGCTGAG
* * *
20778921 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAT
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
20778953 GCATACAGAGTTCATTCCCAGTCTGAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGCTCAGA-CGGACCGAGGGTTGCGGCAGCAGGATCGACA
* *
20779018 GCACGCAGGGGGGACCCGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCGCC
65 GCACGCAGGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCC
*
20779083 CGCACGCTCGTTTCGTTGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
20779111 GCATACGGAGTTCATT-CCATGTCTAAGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGC
20779139 ATACGGAGTT
Statistics
Matches: 276, Mismatches: 56, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
156 4 0.01
157 50 0.18
158 99 0.36
159 119 0.43
160 4 0.01
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCTCAGACGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20779147 original size:26 final size:26
Alignment explanation
Indices: 20779111--20779163 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20779101 GTTGGCTTAG
20779111 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
20779137 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
20779163 G
1 G
20779164 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:20779263 original size:11 final size:11
Alignment explanation
Indices: 20779233--20779265 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
20779223 CCTGGGGCAT
*
20779233 CATCGTCGAAG
1 CATCGTCGGAG
20779244 CATCGTCGGAG
1 CATCGTCGGAG
20779255 CATCGTCGGAG
1 CATCGTCGGAG
20779266 AGCCTAACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:20781768 original size:26 final size:26
Alignment explanation
Indices: 20781732--20781784 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20781722 GTTAACTTAG
20781732 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
20781758 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20781784 G
1 G
20781785 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20787866 original size:26 final size:26
Alignment explanation
Indices: 20787837--20787889 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20787827 GTTGGCTTAG
20787837 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
20787863 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
20787889 G
1 G
20787890 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:20788069 original size:26 final size:26
Alignment explanation
Indices: 20788032--20788085 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
20788022 GTTGACTTAG
* *
20788032 GCATACGGAGTTCA-TCCGTAGTCTAA
1 GCATACGAAGTTCATTCC-CAGTCTAA
20788058 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20788084 GC
1 GC
20788086 TCGGACTGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20788072 original size:195 final size:195
Alignment explanation
Indices: 20787731--20788084 Score: 482
Period size: 195 Copynumber: 1.8 Consensus size: 195
20787721 GGGTTGCAGT
* * * * *
20787731 AGTAGGATTGACAGCACGCAGGGGGGACTAGATCGATCCTCAGTTTACGCATTCTGCCTCTCCGG
1 AGTAGGACTGACAGCACGCAGGGGGGACCAGATCGATCCCCAGCTTACGCATTCTGCCTCTCCGA
* * *
20787796 CCGATTGAGCTCCCGTACGCTCGTTTTGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
66 CCGACTGAGCTCCCG-ACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCATGTCT
* *
20787861 AAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCAAGGGTTGCGGTAGCAGGACTAG
130 AAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGTAGCAGGACTAG
20787926 C
195 C
* * * *
20787927 AGTAGGACTGGCAGCACGTAGGGGGGACCGGGTCGATCCCCAGCTTACGCATTCTGCCTCT-CGA
1 AGTAGGACTGACAGCACGCAGGGGGGACCAGATCGATCCCCAGCTTACGCATTCTGCCTCTCCGA
* * *
20787991 TCGGCTGAGCACTCCC-ACGCTCGTTTCGT-GAGTTGACTTAGGCATACGGAGTTCA-TCCGTAG
66 CCGACTGAG--CTCCCGACGCTCGTTTCGTAG-GTTGACTTAGGCATACGGAGTTCATTCCAT-G
20788053 TCTAAGCATACGAAGTTCATTCCCAGTCTAAG
127 TCTAAGCATACGAAGTTCATTCCCAGTCTAAG
20788085 CTCGGACTGG
Statistics
Matches: 137, Mismatches: 17, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
194 5 0.04
195 74 0.54
196 53 0.39
197 5 0.04
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (195 bp):
AGTAGGACTGACAGCACGCAGGGGGGACCAGATCGATCCCCAGCTTACGCATTCTGCCTCTCCGA
CCGACTGAGCTCCCGACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTA
AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGTAGCAGGACTAGC
Found at i:20788359 original size:159 final size:159
Alignment explanation
Indices: 20788144--20788561 Score: 396
Period size: 159 Copynumber: 2.6 Consensus size: 159
20788134 GGACCGGGTT
* * * ** *** * * * *
20788144 GATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCACCTGCACGCCCGTTTCATGGGTT
1 GATCCCTAGCTTGTGCATTATGCCTCTCTAGCCGGCACAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * * **
20788209 GGCTTAGGCATAGGGAGTTCATTCCATGTCGAAGCCCCAG-CCAGACTGAGGGTTGTGGTAGCAG
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGACAGCAG
* * *
20788273 GACCGGCAGCACATAGAGGGGGACCAGGTC
131 GACCGACAGCACACAG-GGGGGACCAGGCC
* * *
20788303 GAT-CCTCAGCTTGTGCATTATGCCTCT-TCAGTCGGCTCAGCGCCCGTACGCTCGTTTCGTGGG
1 GATCCCT-AGCTTGTGCATTATGCCTCTCT-AGCCGGCACAGCGCCCGCACGCTCGTTTCGTGGG
* * * * * *
20788366 TTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGTGACAG
64 TTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGACAG
** * * *
20788429 CAGGATTGATAGCACGCAGGGGGGACCCGGCC
128 CAGGACCGACAGCACACAGGGGGGACCAGGCC
* * * * * *
20788461 GATCCCTGGCTTGTGCATTCTGCCTCTCTGGCCGGCAGAGCGCCCGCACACTCGTTTCGTTGGTT
1 GATCCCTAGCTTGTGCATTATGCCTCTCTAGCCGGCACAGCGCCCGCACGCTCGTTTCGTGGGTT
20788526 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
20788562 TACGGAGTTC
Statistics
Matches: 206, Mismatches: 45, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 94 0.46
159 106 0.51
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
GATCCCTAGCTTGTGCATTATGCCTCTCTAGCCGGCACAGCGCCCGCACGCTCGTTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGACAGCAG
GACCGACAGCACACAGGGGGGACCAGGCC
Found at i:20788519 original size:158 final size:156
Alignment explanation
Indices: 20788058--20788560 Score: 492
Period size: 158 Copynumber: 3.2 Consensus size: 156
20788048 CGTAGTCTAA
* * ** *
20788058 GCATACGAAGTTCATTCCCA-GTCTAAGCTCGGACTGGACCGAGGGTTACGGCAGTAGGATTGGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCTCAGAC-GGACCGAGGGTTGTGGCAGCAGGATT-GA
* * * * * * *
20788122 AGCACGCAGGGCGGACCGGGTTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCAC
63 AGCACGCAGGGGGGACCAGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCGC
* * *
20788187 CTGCACGCCCGTTTCATGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * * ** *
20788216 GCATAGGGAGTTCATTCCATGTCGAAGCCCCAGCCAGACTGAGGGTTGTGGTAGCAGGACCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAG-CTCAGACGGACCGAGGGTTGTGGCAGCAGGA-TTGAA
** * * * * *
20788281 GCACATAGAGGGGGACCAGGTCGAT-CCTCAGCTTGTGCATTATGCCTCT-TCAGTCGGCTCAGC
64 GCACGCAG-GGGGGACCAGGTCGATCCCT-GGCTTGTGCATTCTGCCTCTCT-GGCCGGCTGAGC
* * *
20788344 GCCCGTACGCTCGTTTCGTGGGTTGACTTAT
126 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
20788375 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGAGGGTTGTGACAGCAGGATTGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGCTCAGA-CGGACCGAGGGTTGTGGCAGCAGGATTGA-
* * *
20788439 AGCACGCAGGGGGGACCCGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCTGGCCGGCAGAGCGC
63 AGCACGCAGGGGGGACCAGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCGC
* *
20788504 CCGCACACTCGTTTCGTTGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
20788533 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
20788561 ATACGGAGTT
Statistics
Matches: 268, Mismatches: 65, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 6 0.02
158 141 0.53
159 118 0.44
160 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGCTCAGACGGACCGAGGGTTGTGGCAGCAGGATTGAAGC
ACGCAGGGGGGACCAGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20788569 original size:26 final size:26
Alignment explanation
Indices: 20788533--20788585 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20788523 GTTGGCTTAG
20788533 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
20788559 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
20788585 G
1 G
20788586 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:20788685 original size:11 final size:11
Alignment explanation
Indices: 20788655--20788687 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
20788645 CCTGGGGCAT
*
20788655 CATCGTCGAAG
1 CATCGTCGGAG
20788666 CATCGTCGGAG
1 CATCGTCGGAG
20788677 CATCGTCGGAG
1 CATCGTCGGAG
20788688 AGCCTAACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:20789303 original size:26 final size:26
Alignment explanation
Indices: 20789267--20789319 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20789257 GTTGACTTAG
*
20789267 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20789293 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20789319 G
1 G
20789320 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20789761 original size:158 final size:155
Alignment explanation
Indices: 20789293--20789786 Score: 465
Period size: 158 Copynumber: 3.1 Consensus size: 155
20789283 CCCAGTCTAA
*
20789293 GCATACGGAGTTCATTCCTAGTCTAAGATCAGA-TCGGA-TCGAGGGTTGCGACAGCAGGATCGG
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACT-GGACT-GAGGGTTGCG-TAGCAGGATCGG
* * * * * * *
20789356 CAGCACGCAGGGGGGACTGGGCTGATACCCAACTTGTGCATTCTGCATCTCTGGCCGATTGAGCG
62 CAGCACGCAGGGGGGACTGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCT-GCCGGTTGAGCG
* *
20789421 CCCGAACGCCCGTTTTGTGGGTTGGCTTAG
126 CCCGAACGCTCGTTTTATGGGTTGGCTTAG
* ** * * * *
20789451 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACTGAGTGTTGTGGTAGC-GAGACCGG
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACTGGACTGAGGGTTG-CGTAGCAG-GATCGG
* * * * * *
20789514 CAGCACACAGAGGGGGACTGAACCGATCCCCGACTTGCGCATTATGCCTCTCTGGCTGGCTCAGC
62 CAGCACGCAG-GGGGGACTGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCT-GCCGGTTGAGC
* * * * * *
20789579 ACCCGCACGCTCATTTTATTGGTTGACCTAG
125 GCCCGAACGCTCGTTTTATGGGTTGGCTTAG
* * *
20789610 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACTAGACTAAGGGTTGCAGTAGCAGGATCGACA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGACTGGACTGAGGGTTGC-GTAGCAGGATCGGCA
* * * * * *
20789675 GCACGTAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTACCTCTCCGATCGGTTGAACGCC
64 GCACGCAGGGGGGACTGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCTG-CCGGTTGAGCGCC
* *
20789740 CGTACGCTCGTTTCATGGGTTGGCTTAG
128 CGAACGCTCGTTTTATGGGTTGGCTTAG
*
20789768 GCATACGGAGTTCTTTCCA
1 GCATACGGAGTTCATTCCA
20789787 TGGCTTAGCA
Statistics
Matches: 265, Mismatches: 59, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
157 5 0.02
158 137 0.52
159 120 0.45
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGTAGCAGGATCGGCAGC
ACGCAGGGGGGACTGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCTGCCGGTTGAGCGCCCGA
ACGCTCGTTTTATGGGTTGGCTTAG
Found at i:20789805 original size:26 final size:27
Alignment explanation
Indices: 20789760--20789811 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
20789750 TTTCATGGGT
** *
20789760 TGGCTTAGGCATACGGAGTTCTTTCCA
1 TGGCTTAGGCATACAAAGTTCATTCCA
20789787 TGGCTTA-GCATACAAAGTTCATTCC
1 TGGCTTAGGCATACAAAGTTCATTCC
20789812 CAGTCTAAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (27 bp):
TGGCTTAGGCATACAAAGTTCATTCCA
Found at i:20790279 original size:172 final size:171
Alignment explanation
Indices: 20789862--20790315 Score: 470
Period size: 172 Copynumber: 2.6 Consensus size: 171
20789852 ACCAGAAGCA
* * * * ** * *
20789862 GGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTACGCATTGTACCTTTTCGATCC
1 GGATAGACAGCACGCAGAGGGGGACCGGGCT-ATCCCCGGCTTTCGCAATACACCTTTCCGATCG
* * * * *
20789927 GCTGAGCGCCTACACGCTCGTTCTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 GCTGAGCACCCACACGCTCGTTTTATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
*
20789992 CCCCCAGTCGAACCGAGGGTTATGGTAGCAAGACCGACAGCG
130 CCCCCAGTCGAACCGAGGGTTATGGCAGCAAGACCGACAGCG
* * * * * *
20790034 GGATTGACAGCACACTGAAGGGGG-CCGAGCCTATCCTCGGC-TT-GCACATTCTACCTTTCCGA
1 GGATAGACAGCACGCAG-AGGGGGACCG-GGCTATCCCCGGCTTTCGCA-ATAC-ACCTTTCCGA
* * *
20790096 TCGGTTGAGCACCCATACGCTCGTTTTATGGGTTGGCTTTAGGCATACGAAGTTCATTCCATGTT
62 TCGGCTGAGCACCCACACGCTCGTTTTATGGGTTGGC-TTAGGCATACGAAGTTCATTCCATGTC
* * * * * *
20790161 TAAG-CCCCA-TCTGGACCGAGGGTTGTGGCAGTAGGACCGGCAGTG
126 TAAGCCCCCAGTC-GAACCGAGGGTTATGGCAGCAAGACCGACAGCG
* * * *
20790206 GGATCAG-CAGCACGCAGAGGGGGACCGGGCTAATCCCCGGCTTTCGTAATACGCCTCTCCGGTC
1 GGAT-AGACAGCACGCAGAGGGGGACCGGGCT-ATCCCCGGCTTTCGCAATACACCTTTCCGATC
* *
20790270 GGCTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACG
64 GGCTGAGCACCCACACGCTCGTTTTATGGGTTGGCTTAGGCATACG
20790316 GACTTCATCC
Statistics
Matches: 230, Mismatches: 41, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
170 3 0.01
171 24 0.10
172 157 0.68
173 44 0.19
174 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (171 bp):
GGATAGACAGCACGCAGAGGGGGACCGGGCTATCCCCGGCTTTCGCAATACACCTTTCCGATCGG
CTGAGCACCCACACGCTCGTTTTATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
CCCCAGTCGAACCGAGGGTTATGGCAGCAAGACCGACAGCG
Found at i:20790339 original size:26 final size:26
Alignment explanation
Indices: 20790309--20790361 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20790299 GTTGACTTAG
20790309 GCATACGGACTTCA-TCCCTAGTCTAA
1 GCATACGGACTTCATTCCC-AGTCTAA
*
20790335 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
20790361 G
1 G
20790362 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:20790697 original size:159 final size:157
Alignment explanation
Indices: 20790335--20790728 Score: 416
Period size: 159 Copynumber: 2.5 Consensus size: 157
20790325 CCTAGTCTAA
* * * *
20790335 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGATAGTAAGATCGATA
1 GCATACGGAGTTCATT-CCAGTCTAAGATTA-ACCAGACCGAGGGTTGCGATAGTAGGATCGACA
* * * * **
20790400 GCACGCA-A-GGGGATCGAGCTGATCCCCGGCTTGCACATTCTGCCTCTTCGGTAAGTTGAGTGC
64 GCACGCAGAGGGGGATCCAGCTGATCCCCGGCTTGCACATTATGCCTCTTCGGTAAGCTCAACGC
*
20790463 CCGCACACTCATTTCGTGGGTTGGCTTAG
129 CCGCACACTCATTTCGTGGGTTGACTTAG
* * * * * * ** *
20790492 GCATAGGGAGTTCATTCCATGTCTAAGCCTTAGCCAAACCAAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATTAACCAGACCGAGGGTTGCGATAGTAGGATCGACA
* * * *
20790557 GCACGCAGAGGGGGA-CCAGGTCGATCCCCGGCTTGCGCGTTATGCCTCTTCGGTAGGCTCAACG
64 GCACGCAGAGGGGGATCCAGCT-GATCCCCGGCTTGCACATTATGCCTCTTCGGTAAGCTCAACG
* * **
20790621 CTCGCACGCTCATTTCGTGGGTTGACTTTT
128 CCCGCACACTCATTTCGTGGGTTGACTTAG
* * *
20790651 GCATATGGAGTTCATTCCTAGTCTAAGATTGAACCAGATCGAGGGTTGCGATAGTAGGATTGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATT-AACCAGACCGAGGGTTGCGATAGTAGGATCGACA
*
20790716 GCACACAGAGGGG
64 GCACGCAGAGGGG
20790729 TAGGGCCGAT
Statistics
Matches: 190, Mismatches: 40, Indels: 12
0.79 0.17 0.05
Matches are distributed among these distances:
156 3 0.02
157 52 0.27
158 9 0.05
159 125 0.66
160 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATTAACCAGACCGAGGGTTGCGATAGTAGGATCGACAGC
ACGCAGAGGGGGATCCAGCTGATCCCCGGCTTGCACATTATGCCTCTTCGGTAAGCTCAACGCCC
GCACACTCATTTCGTGGGTTGACTTAG
Found at i:20790837 original size:26 final size:26
Alignment explanation
Indices: 20790808--20790860 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20790798 GTTGGCTTAG
20790808 GCATACGAAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCTCA-GTCTAA
*
20790834 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
20790860 G
1 G
20790861 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:20792089 original size:26 final size:26
Alignment explanation
Indices: 20792039--20792091 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20792029 GTTGGCTTAG
*
20792039 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
20792065 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
20792091 G
1 G
20792092 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:20792266 original size:26 final size:26
Alignment explanation
Indices: 20792236--20792288 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20792226 ATAGGCTTGG
*
20792236 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
20792262 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
20792288 G
1 G
20792289 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:20792429 original size:381 final size:385
Alignment explanation
Indices: 20791821--20792641 Score: 978
Period size: 381 Copynumber: 2.1 Consensus size: 385
20791811 CACCCTAACA
* *
20791821 CTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTC
* * *
20791886 CCAGTTTAAGATCAAACCGAATCGAAGGTTGCGGTAGTAGGACCAGCAGCAGGATCGACAGCACA
66 CCAGTCTAAGATC-AA-CGAATCGAA-GCTGAGG-AGTAGGA-CAGCAGCAGGATCGACAGCACA
* * *** * *
20791951 CAGGAGCGACCGGGTCGATCCTCGGCTTACGCATTCTACCTTTCCGGTTGGCTAAACGCCCGCAC
126 CAGGAGCGACCGGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTAAACACCCACAC
* * *
20792016 ATTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATT
191 ACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
* *
20792081 CCCAATCTAAGATCGGACCAGA-TCAAGGGTTACGACAGTAGGACCAGCAGTAGGATCGACAGCA
256 CCCAATCTAAGATCAGACCAGACTCAA-GGTTACGACAGTAGGACCAGCAGCAGGATCGACAGCA
* * * * * * *
20792145 CGCAATGGG-GGACCGGGTCGATCCTCAGCTTGCGTGTTCTACCTCTTCGATAGGTCGAGCGCCC
320 CGC-A-GGGTAGA-CAGGTCGATCCCCAGCTTACGT-ATCTACCTCTCCGATAGGTCGAGCACCC
*
20792209 GCACG
381 ACACG
* * * *
20792214 CTCGTTTCATGGATAGGCTTGGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTT
1 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTC
* * ** *
20792279 CCAGTCTAAGATC-A-G-ATCGAA-CTGAGG-GT-TGA-GGCAGCAGGATCGACAGCACGTAGGG
66 CCAGTCTAAGATCAACGAATCGAAGCTGAGGAGTAGGACAGCAGCAGGATCGACAGCACACAGGA
* * * * *
20792337 GGGACCGGG-CTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCACACACTC
131 GCGACCGGGTC-GATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTAAACACCCACACACTC
* *
20792401 ATTTTGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACGGAGTTCATTCCCA
195 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
* * * * *
20792466 GTCTAAGATCAGACCGGACTGAAGGTTACGACAGTAGGACTAGCAGCAGGATCGACAGCATGCAG
260 ATCTAAGATCAGACCAGACTCAAGGTTACGACAGTAGGACCAGCAGCAGGATCGACAGCACGCAG
* * * * * *
20792531 GGTAGATAGGTCGATCCCCGGCTTACGTATCTGCCTCTCCGGTTGGTTGAGCACCCACACG
325 GGTAGACAGGTCGATCCCCAGCTTACGTATCTACCTCTCCGATAGGTCGAGCACCCACACG
* * *
20792592 CTCATTTCGTGGGTTGGCCTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
20792642 CCTAGCCAGA
Statistics
Matches: 367, Mismatches: 58, Indels: 21
0.82 0.13 0.05
Matches are distributed among these distances:
378 69 0.19
379 20 0.05
380 4 0.01
381 184 0.50
382 3 0.01
383 2 0.01
384 2 0.01
386 4 0.01
388 6 0.02
389 1 0.00
391 1 0.00
393 71 0.19
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.24
Consensus pattern (385 bp):
CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTC
CCAGTCTAAGATCAACGAATCGAAGCTGAGGAGTAGGACAGCAGCAGGATCGACAGCACACAGGA
GCGACCGGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTAAACACCCACACACTCA
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAA
TCTAAGATCAGACCAGACTCAAGGTTACGACAGTAGGACCAGCAGCAGGATCGACAGCACGCAGG
GTAGACAGGTCGATCCCCAGCTTACGTATCTACCTCTCCGATAGGTCGAGCACCCACACG
Found at i:20792442 original size:184 final size:186
Alignment explanation
Indices: 20791747--20792641 Score: 658
Period size: 196 Copynumber: 4.7 Consensus size: 186
20791737 GCGGGACCGG
* * * * * * ** * *
20791747 CAGCACACAGAGGGGGACTGGGCTGATCCCCTGCTTGCGCATTATGCCTCTCCGGTCGACTCAGC
1 CAGCACGCAG-GGGAGACAGGGC-GATCCCCGGCTTACGCA-TCTGCCTCTCCGACCGGCTGAGC
* * * *
20791812 ACCCTA-ACACTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACG
63 ACCC-ACACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACA
* *
20791876 GAGTTCATTCCCAGTTTAAGATCAAACCGAA-TCGAAGGTTGCGGTAGTAGGACCAGCAGCAGGA
127 GAGTTCATTCCCAGTCTAAGATCAGACCGAACT-GAAGG-T----TAGTAGG---AGCAGCAGGA
20791940 TCGA
183 TCGA
* * * * * * * *** * * *
20791944 CAGCACACAGGAGCGACCGGGTCGATCCTCGGCTTACGCATTCTACCTTTCCGGTTGGCTAAACG
1 CAGCACGCAGGGGAGACAGGG-CGATCCCCGGCTTACGCA-TCTGCCTCTCCGACCGGCTGAGCA
* * * **
20792009 CCCGCACATTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGA
64 CCCACACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGA
* * * *
20792074 GTTCATTCCCAATCTAAGATCGGACC-AGA-TCAAGGGTTACGACAGTAGGACCAGCAGTAGGAT
129 GTTCATTCCCAGTCTAAGATCAGACCGA-ACTGAA-GGTT-----AGTAGG---AGCAGCAGGAT
20792137 CGA
184 CGA
* * * * ** * * **
20792140 CAGCACGCAATGGGG-GACCGGGTCGATCCTCAGCTTGCGTGTTCTACCTCTTCGATAGG-TCGA
1 CAGCACGC-A-GGGGAGACAGGG-CGATCCCCGGCTTACG-CATCTGCCTCTCCGACCGGCT-GA
* * * * * * * *
20792203 GCGCCCGCACGCTCGTTTCATGGATAGGCTTGGGCATACGGAGTTCATTCCATGTCTAAGCATAC
61 GCACCCACACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC
* * *
20792268 AGAGTTCATTTCCAGTCTAAGATCAGATCGAACTGAGGGTT-G-A-G-GCAGCAGGATCGA
126 AGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAAGGTTAGTAGGAGCAGCAGGATCGA
* * * *
20792325 CAGCACGTAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCA
1 CAGCACGCAGGGGAGACAGGGC-GATCCCCGGCTTACGCA-TCTGCCTCTCCGACCGGCTGAGCA
* * *
20792390 CCCACACACTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACGGA
64 CCCACACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGA
*
20792455 GTTCATTCCCAGTCTAAGATCAGACCGGACTGAAGGTTACGACAGTAGGACTAGCAGCAGGATCG
129 GTTCATTCCCAGTCTAAGATCAGACCGAACTGAAGGTT-----AGTAGG---AGCAGCAGGATCG
20792520 A
186 A
* * * * * *** *
20792521 CAGCATGCAGGGTAGATAGGTCGATCCCCGGCTTACGTATCTGCCTCTCCGGTTGGTTGAGCACC
1 CAGCACGCAGGGGAGACAGGGCGATCCCCGGCTTACGCATCTGCCTCTCCGACCGGCTGAGCACC
* *
20792586 CACACGCTCATTTCGTGGGTTGGCCTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 CACACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
20792642 CCTAGCCAGA
Statistics
Matches: 574, Mismatches: 93, Indels: 65
0.78 0.13 0.09
Matches are distributed among these distances:
183 5 0.01
184 127 0.22
185 20 0.03
189 1 0.00
190 2 0.00
191 3 0.01
192 1 0.00
194 74 0.13
195 19 0.03
196 182 0.32
197 134 0.23
198 6 0.01
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.24
Consensus pattern (186 bp):
CAGCACGCAGGGGAGACAGGGCGATCCCCGGCTTACGCATCTGCCTCTCCGACCGGCTGAGCACC
CACACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGT
TCATTCCCAGTCTAAGATCAGACCGAACTGAAGGTTAGTAGGAGCAGCAGGATCGA
Found at i:20792456 original size:26 final size:26
Alignment explanation
Indices: 20792420--20792472 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20792410 GTTGGCTTAG
*
20792420 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20792446 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20792472 G
1 G
20792473 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20793271 original size:26 final size:26
Alignment explanation
Indices: 20793241--20793293 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20793231 GTTGGCTTAG
20793241 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
20793267 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20793293 G
1 G
20793294 ATTAGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20793810 original size:26 final size:25
Alignment explanation
Indices: 20793767--20793818 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 25
20793757 GTTGGCTTAG
20793767 GCATACAAAGTTCATTCCATATCTAA
1 GCATACAAAGTTCATTCC-TATCTAA
*
20793793 GCATAC-AAGTTCATTTCCTGTCTAA
1 GCATACAAAGTTCA-TTCCTATCTAA
20793818 G
1 G
20793819 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.33
Consensus pattern (25 bp):
GCATACAAAGTTCATTCCTATCTAA
Found at i:20794354 original size:26 final size:26
Alignment explanation
Indices: 20794318--20794370 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20794308 GTTGGCTTAG
20794318 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
20794344 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20794370 G
1 G
20794371 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20795938 original size:26 final size:26
Alignment explanation
Indices: 20795902--20795954 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20795892 GTTGACTTAT
*
20795902 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
20795928 GCATACGGAGTTTATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
20795954 G
1 G
20795955 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:20796452 original size:26 final size:26
Alignment explanation
Indices: 20796402--20796454 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20796392 GTTCGTTTAG
*
20796402 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
20796428 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
20796454 G
1 G
20796455 ATCAGATCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:20796589 original size:185 final size:177
Alignment explanation
Indices: 20796244--20796792 Score: 552
Period size: 185 Copynumber: 3.0 Consensus size: 177
20796234 GTTGACTTAG
* *
20796244 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCTGTAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGATC--A--GAGGGTTGC-GAAGTAGGATCGATA
* ** ** * * *
20796309 TCACACAGGGGCTACCGGGCCGATCCCCAGCTTGAGCATTCTGCCTCTCCGATCGGCTAAGCGCC
61 GCACGTAGGGGGGACTGGGCCGATCCCCAACTT-AGCATTCTGCCTCTCCGATCGGCTGAGCGCC
* * * *
20796374 CGTACGGTCGTTTCATGGGTTCGTTTAGGCATACAGAGTTCATTCCATGTCTAA
125 CGCACGCTCGTTTCGTGGGTT-GCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * * *
20796428 GCATACAGAGTTCATTCCCAATCTAAGATCAGATCAAATTGAGGGTTACGGAAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGATC--A--GAGGGTTGC-GAAGTAGGATCGATA
* * *
20796493 GCACGTAGGGGGGGACTGGGCCGATCCCCAACTTACGCAATCTGCCTCTTCGATCGGTTGAGCGC
61 GCACGTA-GGGGGGACTGGGCCGATCCCCAACTTA-GCATTCTGCCTCTCCGATCGGCTGAGCGC
* * *
20796558 CCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGTGTTCATCCCCA-GTCTAA
124 CCGCACGCTCGTTTCGTGGGTTG-CTTAGGCATACAGAGTTCAT-TCCATGTCTAA
* *
20796613 GCATACGGAGTTCATTCCCAATCTAAGATCGGATC-GAGGGTTGCAACAGTAGGATC-AGTAGCA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGAGGGTTGCGA-AGTAGGATCGA-TAGCA
* * *
20796676 CGTA-GGGGGA-TCGGGCCGATCCTCGAA-TTATGCATTCTGCCTCTCCGACCGGCTGAGAGCCC
64 CGTAGGGGGGACT-GGGCCGATCC-CCAACTTA-GCATTCTGCCTCTCCGATCGGCTGAGCGCCC
* * * **
20796738 GCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
126 GCACGCTCGTTTCGTGGGTT-GCTTAGGCATACAGAGTTCATTCCATGTCTAA
20796791 GC
1 GC
20796793 CCCAGTCGGA
Statistics
Matches: 305, Mismatches: 50, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
177 4 0.01
178 86 0.28
179 6 0.02
180 24 0.08
184 60 0.20
185 122 0.40
186 3 0.01
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.24
Consensus pattern (177 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGAGGGTTGCGAAGTAGGATCGATAGCACG
TAGGGGGGACTGGGCCGATCCCCAACTTAGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:20796616 original size:26 final size:26
Alignment explanation
Indices: 20796587--20796639 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20796577 GTTGACTTAG
* *
20796587 GCATACAGTGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
20796613 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
20796639 G
1 G
20796640 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:20796914 original size:158 final size:159
Alignment explanation
Indices: 20796752--20797109 Score: 377
Period size: 158 Copynumber: 2.3 Consensus size: 159
20796742 ACCCATTTCG
* * * *
20796752 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGACCGAGGGTTGTGA
* * * * * *
20796816 TA-TGGGA-CTGGCAGCATGCAAAGGGGG-ATCGGGCTGATCCTCGATTTGCACATTATACCTCT
66 TAGTAGGATC-GACAGCA--CAAAGGGGGCACCGGGCCGATCCCCGACTTGCACATTATACCTCT
* * **
20796878 CCGATTGACTCAGCACCCGAACGCTCGTTTTA
128 CCGACTGACTCAGCACCCGAACGCTCATTCCA
* * * * *
20796910 TGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCGGATCAGATCGAGGGTTGTG
1 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCAGACCGAGGGTTGTG
* * * *
20796973 ATAGTAGGATCGACAGCACACAGGGGGCACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC
65 ATAGTAGGATCGACAGCACAAAGGGGGCACCGGGCCGATCCCCGACTTGCACATTATACCTCTCC
* * * * *
20797038 GGCTGGCTGAGCGCCCGTACGCTCATTCCA
130 GACTGACTCAGCACCCGAACGCTCATTCCA
*
20797068 TGGGTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
20797110 TACGGAGTTC
Statistics
Matches: 162, Mismatches: 31, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
157 13 0.08
158 134 0.83
159 14 0.09
160 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGACCGAGGGTTGTGA
TAGTAGGATCGACAGCACAAAGGGGGCACCGGGCCGATCCCCGACTTGCACATTATACCTCTCCG
ACTGACTCAGCACCCGAACGCTCATTCCA
Found at i:20797007 original size:679 final size:690
Alignment explanation
Indices: 20795891--20797523 Score: 1901
Period size: 679 Copynumber: 2.3 Consensus size: 690
20795881 TCATTCCGTT
* *
20795891 GGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTTATTCCCAATCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGA
* *
20795956 TCGGACCAGACCGAGGGTTGCGGTAGCAGGATC-GATAGCACGCAGGGGGATCAGGCCGATCCGT
66 TC-G----GACCGAGGGTTGCGGCAGCAGGATCAG-TAGCACGCAGGGGGATCGGGCCGATCC-T
* * * * *
20796020 -GTCTTACGCATTCTGCCTCTTCGGTTGGCTGAGCGCCAGGACACCCGTTTCGTGGGTTGACTTA
124 CGACTTACGCATTCTGCCTCTCCGGCTGGCTGAGCGCCAGCACACCCGTTTCGTGGGTTGGCTTA
* * * * *
20796084 GGCATAAGGAGTTCATTCCATGTCTAAACCCCAGCCGGATCGATGGTTGTGGTAGCGAGACTAGC
189 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGAGACTAGC
* * ** * *
20796149 AGCACGCAGAAATGGATCGGGTCGATCCTCGGCTGGCGTATTATGCCTCTTCGACTGACTCAGCA
254 AGCACGCAGAAAGGGATCGGGTCGATCCTCGACTGGCACATTATACCTCTCCGACTGACTCAGCA
* * *
20796214 CCCGAACGGTCGTTTCCTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC
319 CCCGAACGCTCGTTTCATAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATC
* * *
20796279 GGACCGAGGGTTGCTGTAGTAGGATCGATATCACACAGGGGCTACCGGGCCGATCCCC-AGCTTG
384 AGACCGAGGGTTGCTGTAGTAGGATCGACAGCACACAGGGGCTACCGGGCCGATCCCCGA-CTTG
* * * * *
20796343 AGCATTCTGCCTCTCC-GATCGGCTAAGCGCCCGTACGGTCGTTTCATGGGTTCGTTTAGGCATA
448 AGCATTCTGCCTCTCCGGCT-GGCTAAGCGCCCGTACGCTCATTCCATGGGTTCGCTTAGGCATA
*
20796407 CAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGATC-A-AA-TTG
512 CAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATATAAGATCAGATCAACAAGTTG
* **
20796469 AGG-GT-TACGGA-AGCAGGATCGACAGCACGTAGGGGGGGA-CTGGGCCGATCCCCA-ACTTAC
577 AGGAGTAGACCAACAGCAGGATCGACAGCACGTA-GGGGGGATC-GGGCCGAT-CCCAGACTTAC
*
20796529 GCAATCTGCCTCTTCGATCGG-T-T---G-AGCGCCCGCACGCTTGTTTCGTG
639 GCAATCTGCCTCTTCGATCGGCTCTGACGCAGCGCCCG-ACGCTCGTTTCGTG
* *
20796576 GGTTGACTTAGGCATACAGTGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGA
* ** * * *
20796641 TCGGATCGAGGGTTGCAACAGTAGGATCAGTAGCACGTAGGGGGATCGGGCCGATCCTCGAATTA
66 TCGGACCGAGGGTTGCGGCAGCAGGATCAGTAGCACGCAGGGGGATCGGGCCGATCCTCGACTTA
* * * * * *
20796706 TGCATTCTGCCTCTCCGACCGGCTGAGAGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAG
131 CGCATTCTGCCTCTCCGGCTGGCTGAGCGCCAGCACACCCGTTTCGTGGGTTGGCTTAGGCATAG
* *
20796771 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTATG-G-GACTGGCAGCATG
196 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTA-GCGAGACTAGCAGCACG
* * * *
20796834 CA-AAGGGGGATCGGG-CTGATCCTCGATTTGCACATTATACCTCTCCGATTGACTCAGCACCCG
260 CAGAA-AGGGATCGGGTC-GATCCTCGACTGGCACATTATACCTCTCCGACTGACTCAGCACCCG
* * * *
20796897 AACGCTCGTTTTATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGAT
323 AACGCTCGTTTCATAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGAC
*
20796962 CGAGGGTTG-TGATAGTAGGATCGACAGCACACAGGGGGC-ACCGGGCCGATCCCCGACTTGCGC
388 CGAGGGTTGCTG-TAGTAGGATCGACAGCACACA-GGGGCTACCGGGCCGATCCCCGACTTGAGC
* *
20797025 ATTCTGCCTCTCCGGCTGGCTGAGCGCCCGTACGCTCATTCCATGGGTTCGCTTAGGCATACGGA
451 ATTCTGCCTCTCCGGCTGGCTAAGCGCCCGTACGCTCATTCCATGGGTTCGCTTAGGCATACAGA
* *
20797090 GTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATATAAGATCGGATCAGACCGAAGGTTG
516 GTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATATAAGATCAGATCA-A-C-AA-GTTG
* * * *
20797155 TGGCAGTAGGACCAACAGCAGGATCGGCAGCACGTAGGGGGGATCGGGCCGATCCCAGGCTTGCG
577 AGG-AGTA-GACCAACAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCAGACTTACG
* * * *
20797220 CATTCTGCCTCTTTGGTCGGCCTCTCTGACCGGCTGAGCGCCCGATGCTCGTTTCGTG
640 CAATCTGCCTCTTCGATCGG---CTCTGA-C-GC--AGCGCCCGACGCTCGTTTCGTG
* * * *
20797278 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGA
* * * * *** * * * *
20797343 TCGAACCGGACTGATGGTTACGGCTGCAAGATCAACGGCAAGCAGGGGGGACCGGGTCGATCCCC
66 TCGGACC-GA--G--GGTTGCGGCAGCAGGATCAGTAGCACGCA-GGGGGATCGGGCCGATCCTC
* * * * * *
20797408 GACTTACGCATTTTGCCTCTCCGGCTGACTAAGCGCCTGCACGCCCGTTTCGTGGGTTGGCATAG
125 GACTTACGCATTCTGCCTCTCCGGCTGGCTGAGCGCCAGCACACCCGTTTCGTGGGTTGGCTTAG
**
20797473 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTAGACCGAGGGTTGTGG
190 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGG
20797524 CAGCAGGACC
Statistics
Matches: 797, Mismatches: 109, Indels: 61
0.82 0.11 0.06
Matches are distributed among these distances:
678 5 0.01
679 270 0.34
680 155 0.19
681 3 0.00
684 3 0.00
685 63 0.08
686 5 0.01
688 2 0.00
689 4 0.01
690 40 0.05
691 20 0.03
694 1 0.00
695 1 0.00
700 1 0.00
702 76 0.10
703 10 0.01
705 1 0.00
707 18 0.02
708 119 0.15
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (690 bp):
GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGA
TCGGACCGAGGGTTGCGGCAGCAGGATCAGTAGCACGCAGGGGGATCGGGCCGATCCTCGACTTA
CGCATTCTGCCTCTCCGGCTGGCTGAGCGCCAGCACACCCGTTTCGTGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGAGACTAGCAGCACGC
AGAAAGGGATCGGGTCGATCCTCGACTGGCACATTATACCTCTCCGACTGACTCAGCACCCGAAC
GCTCGTTTCATAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGA
GGGTTGCTGTAGTAGGATCGACAGCACACAGGGGCTACCGGGCCGATCCCCGACTTGAGCATTCT
GCCTCTCCGGCTGGCTAAGCGCCCGTACGCTCATTCCATGGGTTCGCTTAGGCATACAGAGTTCA
TTCCATGTCTAAGCATACAGAGTTCATTCCCAATATAAGATCAGATCAACAAGTTGAGGAGTAGA
CCAACAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCAGACTTACGCAATCTGCCTC
TTCGATCGGCTCTGACGCAGCGCCCGACGCTCGTTTCGTG
Found at i:20797133 original size:26 final size:26
Alignment explanation
Indices: 20797081--20797133 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20797071 GTTCGCTTAG
* *
20797081 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATATAA
20797107 GCATACGGAGTTCATTCCCA-ATATAA
1 GCATACGGAGTTCATT-CCATATATAA
20797133 G
1 G
20797134 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATATAA
Found at i:20799113 original size:159 final size:157
Alignment explanation
Indices: 20798747--20799239 Score: 343
Period size: 158 Copynumber: 3.1 Consensus size: 157
20798737 CCTAGTCTAA
* * * ** * *
20798747 GCATACAAAGTTCATTCCCAGTCTGAGATCAGACCAGATCGAGGGTTACGACAACAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GGTTGTGACAACAGGACCAACA
* ** * * **
20798812 GCACGCAGGGGGGACCGGATTGATCCTTGGCTTGCGCATTCTGCCTTTACGGCTGGCTGAGTGCC
65 GCACGCAAGGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTTTACGACTGGCTGAGCACC
* *
20798877 CACACGCCTATTTCATGGGTTGGCTTAG
130 CACACGCCTATTTCATGGGTTGACATAG
* * * ** * ** * * *
20798905 GCATAGGGAGTTCATT-GCATGTCTAAGCCCCAG-CCGGATCAAAGGTTGTGGCAGCGGGACCAA
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCAGA-CCGAGGTTGTGACAACAGGACCAA
* * *
20798968 CAGCATGCAAAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTAC-GCCTCTT-CGACTGGCTTA
63 CAGCACGC-AAGGGGGACCGGACCGATCCCTGGCTTGCGCATT-CTGCCT-TTACGACTGGCTGA
*
20799031 GCACCCACACG-CTCGTTTCATGGGTTGACATAG
125 GCACCCACACGCCT-ATTTCATGGGTTGACATAG
* * ***
20799064 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGATTGTGATAGCAGGATTGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG-TTGTGACAACAGGACCAACA
* * * * * * * * * * * * **
20799129 GGATGCAGGGGGGACTGGATC-AGTCCCCGACTTACGCATTCTGCCTCTCCGACCGACTGAGTGC
65 GCACGCAAGGGGGACCGGACCGA-TCCCTGGCTTGCGCATTCTGCCTTTACGACTGGCTGAGCAC
** * *
20799193 CCGTACG-CTCATTTCATGGGTTGGCTTAG
129 CCACACGCCT-ATTTCATGGGTTGACATAG
*
20799222 GCATACGGAGTTCATTCC
1 GCATACGAAGTTCATTCC
20799240 ATGCCTAAGC
Statistics
Matches: 257, Mismatches: 65, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
157 5 0.02
158 132 0.51
159 115 0.45
160 5 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGTTGTGACAACAGGACCAACAG
CACGCAAGGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTTTACGACTGGCTGAGCACCC
ACACGCCTATTTCATGGGTTGACATAG
Found at i:20799893 original size:159 final size:158
Alignment explanation
Indices: 20799345--20799921 Score: 470
Period size: 159 Copynumber: 3.6 Consensus size: 158
20799335 GGACCTGACT
* * * *
20799345 GATCCCCGGCTTACGCATTTTGCCTCTCCGGCCGACTGAGCACCCGCACGCCCGTTTCATGGGTT
1 GATCCCCGACTTGCGCATTATGCCTCTCCGGCCGACTGAGCACCCGCACGCCCATTTCATGGGTT
* * * * * **
20799410 GGCTTGGGCATAGGAAGTTCATTCCATGTCTAAGCCCCTACCGGACCAAGGGTTATGGCAGCGGG
66 GACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGTAGG
* * *
20799475 ACTGGTAGCACGCAAAGGGAGACCGAGCC
131 ACCGGTAGCACGTAGAGGGAGACCG-GCC
* * * * ** * *
20799504 GATCCTCGGCTTGCGCATTATGCCTCTCCGG-CTAGCTCAATG-A-CCGCATACTCATTTTATGG
1 GATCCCCGACTTGCGCATTATGCCTCTCCGGCCGA-CT-GA-GCACCCGCACGCCCATTTCATGG
* * * ** * *
20799566 GTTGACTTAGGGATACGGTGTTCATTCCCA-GTCTCAA--ATCAGACCAGACCAAGGGTTGCGGC
63 GTTGACTTAGGCATAGGGAGTTCATT-CCATGTCT-AAGCCCCA-ACCGGACCAAGGGTTGTGGC
* ** * *
20799628 AGTAGGATCGACAGCACGTAG-GGGTGGATCGGGCC
125 AGTAGGACCGGTAGCACGTAGAGGG-AGA-CCGGCC
* * * * * * * * *
20799663 AATCCCCAACTTGCGCATTCTGCCTCTCTGACTGACTGAGCGCCCGCATGCCCATTTCGTGGGTT
1 GATCCCCGACTTGCGCATTATGCCTCTCCGGCCGACTGAGCACCCGCACGCCCATTTCATGGGTT
* ** * * *
20799728 GGCTTAGGTGTAGGGA-TATCATTCCATGTCTAAGCCCCAACTGGACCGAGGGTTGTGGCTGTAG
66 GACTTAGGCATAGGGAGT-TCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGTAG
20799792 GACCGGTAGCACGTAGAGGG-GCACCGGCC
130 GACCGGTAGCACGTAGAGGGAG-ACCGGCC
* * * * * *
20799821 TGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTTAGCACCCTCACGCTCGTTTCATGGCT
1 -GATCCCCGACTTGCGCATTATGCCTCTCCGGCCGACTGAGCACCCGCACGCCCATTTCATGGGT
**
20799886 TGACTTAGGCATACAGAGTTCATTCCATGTCTAAGC
65 TGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
20799922 GTACGGAGTT
Statistics
Matches: 316, Mismatches: 83, Indels: 38
0.72 0.19 0.09
Matches are distributed among these distances:
157 1 0.00
158 19 0.06
159 279 0.88
160 16 0.05
161 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.24
Consensus pattern (158 bp):
GATCCCCGACTTGCGCATTATGCCTCTCCGGCCGACTGAGCACCCGCACGCCCATTTCATGGGTT
GACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGTAGG
ACCGGTAGCACGTAGAGGGAGACCGGCC
Found at i:20800677 original size:195 final size:196
Alignment explanation
Indices: 20800223--20800691 Score: 613
Period size: 196 Copynumber: 2.4 Consensus size: 196
20800213 CTTCGATTGA
* * *
20800223 CCTCTCAGGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
* * * *
20800288 TCCATGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCCGTAG
66 TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAAGGTTGCCGCAG
* * * * * *
20800353 CAGGACCAGCAGTAGGATCGATAGCACGTAGGGGGGATCGAGTCGATCCCCGACTTGCGCATTTT
131 CAGGACCAGCAGCAGGATCGACAGCACGTAGAGGGGATCGAGCCAATCCCCGACTTGCGCATTCT
20800418 G
196 G
* * * * * *
20800419 CCTCTTCGGCCGACTAAGCGCCCTCACGCCCGTTTCTTGGGTTGGCTTAGGCATATGGAGTTCAT
1 CCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
* *
20800484 TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT-TGAACTGGA-TCGAAGGTTG-CGA
66 TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACT-GAAGGTTGCCG-
* * *
20800546 CAGCAGGACCAGCA-CAGGATCGACAGCACGTAGAGGGGATCGGGCCAATCCGCGGCTTGCGCAT
128 CAGCAGGACCAGCAGCAGGATCGACAGCACGTAGAGGGGATCGAGCCAATCCCCGACTTGCGCAT
20800610 TCTG
193 TCTG
* ** * * *
20800614 CCTCTCCGGTCGGTTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGTATACAGAGTTCAT
1 CCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
20800679 TCCATGTCTAAGC
66 TCCATGTCTAAGC
20800692 CCCAGTTGGA
Statistics
Matches: 235, Mismatches: 35, Indels: 7
0.85 0.13 0.03
Matches are distributed among these distances:
195 115 0.49
196 120 0.51
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (196 bp):
CCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAAGGTTGCCGCAG
CAGGACCAGCAGCAGGATCGACAGCACGTAGAGGGGATCGAGCCAATCCCCGACTTGCGCATTCT
G
Found at i:20800822 original size:171 final size:169
Alignment explanation
Indices: 20800495--20800861 Score: 423
Period size: 171 Copynumber: 2.2 Consensus size: 169
20800485 CCATGTCTAA
**** ** * ** **
20800495 GCATACAGAGTTCATTCCCAGTCTAAGATTGAACTGGATCGAAGGTTGCGACAGCAGGACCAGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGCCCCAGTTGGATCGAGGGTTATGGTAGCAGGACCAGCA
* * * *
20800560 CAGGATCGACAGCACGTAGAGGGGATCGGGCCAATCCGCGGCTTGCGCATTCTGCCTCTCCGGTC
66 CAGGATCGACAGCACGCAGAGGGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGGCC
* * * **
20800625 GGTTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAG
131 GGCTCAGAGCCCGCACACTCGTTTCATGGGTTCACTTAG
*
20800664 GTATACAGAGTTCATT-CCATGTCTAAGCCCCAGTTGGATCGAGGGTTATGGTAGCAGGACC-GA
1 GCATACAGAGTTCATTCCCA-GTCTAAGCCCCAGTTGGATCGAGGGTTATGGTAGCAGGACCAG-
* * * *
20800727 CAGCAGGATCGATAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTTTTC
64 CA-CAGGATCGACAGCACGCAGA-GGGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCC
* * *
20800792 GGCCGGCTCAGAGCCCGCACGCTTGTTTCATGGGTTCACTTAT
127 GGCCGGCTCAGAGCCCGCACACTCGTTTCATGGGTTCACTTAG
*
20800835 GCATACGGAGTTCATTCCCAGTCTAAG
1 GCATACAGAGTTCATTCCCAGTCTAAG
20800862 ATCAGATCGA
Statistics
Matches: 163, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
168 4 0.02
169 47 0.29
170 18 0.11
171 91 0.56
172 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (169 bp):
GCATACAGAGTTCATTCCCAGTCTAAGCCCCAGTTGGATCGAGGGTTATGGTAGCAGGACCAGCA
CAGGATCGACAGCACGCAGAGGGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGGCC
GGCTCAGAGCCCGCACACTCGTTTCATGGGTTCACTTAG
Found at i:20800881 original size:171 final size:169
Alignment explanation
Indices: 20800547--20801022 Score: 399
Period size: 159 Copynumber: 2.9 Consensus size: 169
20800537 AGGTTGCGAC
* * *
20800547 AGCAGGACCAGCACAGGATCGACAGCACGTAGAGGGGATCGGGCCAATCCGCGGCTTGCGCATTC
1 AGCAGGACCAGCACAGGATCGACAGCACGCAGAGGGGATCGGGCCAATCCCCGGCTTGCGCATTA
* * * * ** *
20800612 TGCCTCTCCGGTCGGTTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGTATACAGAGTTC
66 TGCCTCTCCGGCCGGCTCAGAGCCCGCACACTCGTTTCATGGGTTCACTTAGGCATACAGAGTTC
* * *
20800677 ATTCCATGTCTAAGCCCCAGTTGGATCGAGGGTTATGGT
131 ATTCCATGTCTAAGCACCAGTCGAATCGAGGGTTATGGT
* *
20800716 AGCAGGACC-GACAGCAGGATCGATAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCA
1 AGCAGGACCAG-CA-CAGGATCGACAGCACGCAGA-GGGGATCGGGCCAATCCCCGGCTTGCGCA
* * * * * *
20800780 TTATGCCTTTTCGGCCGGCTCAGAGCCCGCACGCTTGTTTCATGGGTTCACTTATGCATACGGAG
63 TTATGCCTCTCCGGCCGGCTCAGAGCCCGCACACTCGTTTCATGGGTTCACTTAGGCATACAGAG
*
20800845 TTCATTCCCA-GTCTAAG-ATCAGATCGAAAT-GAGGG---T--T
128 TTCATT-CCATGTCTAAGCACCAG-TCG-AATCGAGGGTTATGGT
* * * ** * **
20800882 -GCA-G--CAG--CAGGATCGACAGCACGCAGGGGGGGACCAGGCCGGTCCCCGGCATATGCATT
1 AGCAGGACCAGCACAGGATCGACAGCACGCA-GAGGGGATCGGGCCAATCCCCGGCTTGCGCATT
* * * * * * * ** * *
20800941 CTACCTCTTCGGCTGGTTGAGCA-CCCGCACACTTGTTTCATGGGTTGGCTGAGGCATACGGAGT
65 ATGCCTCTCCGGCCGGCTCAG-AGCCCGCACACTCGTTTCATGGGTTCACTTAGGCATACAGAGT
20801005 TCATTCCATGTCTAAGCA
129 TCATTCCATGTCTAAGCA
20801023 TACGGAGTTC
Statistics
Matches: 255, Mismatches: 41, Indels: 31
0.78 0.13 0.09
Matches are distributed among these distances:
158 3 0.01
159 105 0.41
160 3 0.01
162 1 0.00
163 1 0.00
164 1 0.00
165 3 0.01
166 1 0.00
168 2 0.01
169 11 0.04
170 21 0.08
171 98 0.38
172 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (169 bp):
AGCAGGACCAGCACAGGATCGACAGCACGCAGAGGGGATCGGGCCAATCCCCGGCTTGCGCATTA
TGCCTCTCCGGCCGGCTCAGAGCCCGCACACTCGTTTCATGGGTTCACTTAGGCATACAGAGTTC
ATTCCATGTCTAAGCACCAGTCGAATCGAGGGTTATGGT
Found at i:20801024 original size:26 final size:26
Alignment explanation
Indices: 20800994--20801046 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20800984 GTTGGCTGAG
20800994 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20801020 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20801046 G
1 G
20801047 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20801745 original size:26 final size:26
Alignment explanation
Indices: 20801715--20801767 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20801705 GTTGACTTAG
*
20801715 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
20801741 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20801767 G
1 G
20801768 ATCAGACAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20806023 original size:159 final size:159
Alignment explanation
Indices: 20805762--20806141 Score: 414
Period size: 158 Copynumber: 2.4 Consensus size: 159
20805752 CGACCGGCCA
* * * * * *
20805762 AGCACCAGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCC
1 AGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCAC
* * * ** *
20805826 CAACTAGACCGAGGGTTGTGGTAGCGGGACTGGTAGCAC-ACAGAGGGGGACCAGGCCGATCCTC
66 CAACCAGACCGAGGGTTGTGGCAGCAGGACTGACAGCACGA-AG-GGGGGACCAAGCCGATCCTC
*
20805890 AGCTTGCGC-ATTATGCCTCTCTGGCCAGCTC
129 AGCTTGC-CTATTATACCTCTCTGGCCAGCTC
** * * *
20805921 AGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-ATCTAAG-AT
1 AGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCAC
* * *
20805984 CAGACCGGACCGAGGGTTGTGGCAGCAGGA-TCGACAGCACGAAGGGGGGATCAAGCCGATTCTC
66 CA-ACCAGACCGAGGGTTGTGGCAGCAGGACT-GACAGCACGAAGGGGGGACCAAGCCGATCCTC
* * * * *
20806048 GGCTTGCCTATTCTACCTCTCTGGCCGGTTG
129 AGCTTGCCTATTATACCTCTCTGGCCAGCTC
* *
20806079 AGCACCCGTATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCA
1 AGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCA
20806142 TACGGAGTTC
Statistics
Matches: 182, Mismatches: 32, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
157 4 0.02
158 94 0.52
159 80 0.44
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
AGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCAC
CAACCAGACCGAGGGTTGTGGCAGCAGGACTGACAGCACGAAGGGGGGACCAAGCCGATCCTCAG
CTTGCCTATTATACCTCTCTGGCCAGCTC
Found at i:20806112 original size:158 final size:160
Alignment explanation
Indices: 20805732--20806141 Score: 424
Period size: 159 Copynumber: 2.6 Consensus size: 160
20805722 CCAATCCCCG
* * * * * * *
20805732 GCTTGCGCATTCTACCTCTCCGACCGGC-CAAGCACCAGCACGCCCGTTTCATGGGTTGGCTTAG
1 GCTTGCGCATTATACCTCTCTGGCCAGCTC-AGCACCCGCATGCTCGTTTCATGGGTTGGCTTAG
* * * * * * **
20805796 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACTAGACCGAGGGTTGTGGTAGCGGGACTGGT
65 GCATACGGAGTTCATTCCCATATCTAAGCACCAACCAGACCGAGGGTTGTGGCAGCAGGACTGAC
*
20805860 AGCACACAGAGGGGGACCAGGCCGATCCTCA
130 AGCACACAGAGGGGGACCAAGCCGATCCTCA
* ** * *
20805891 GCTTGCGCATTATGCCTCTCTGGCCAGCTCAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAGG
1 GCTTGCGCATTATACCTCTCTGGCCAGCTCAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGG
* *
20805956 CATACGGAGTTCATTCCCA-ATCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGA-TCGA
66 CATACGGAGTTCATTCCCATATCTAAGCACCA-ACCAGACCGAGGGTTGTGGCAGCAGGACT-GA
* * *
20806018 CAGCACGA-AG-GGGGGATCAAGCCGATTCTCG
129 CAGCAC-ACAGAGGGGGACCAAGCCGATCCTCA
* * * * *
20806049 GCTTGC-CTATTCTACCTCTCTGGCCGGTTGAGCACCCGTATGCTCGTTTCATGGGTTGGCTTAG
1 GCTTGCGC-ATTATACCTCTCTGGCCAGCTCAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAG
*
20806113 GCATACGGAGTTCATT-CCATGTCTAAGCA
65 GCATACGGAGTTCATTCCCATATCTAAGCA
20806142 TACGGAGTTC
Statistics
Matches: 206, Mismatches: 37, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
157 4 0.02
158 94 0.46
159 103 0.50
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (160 bp):
GCTTGCGCATTATACCTCTCTGGCCAGCTCAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGG
CATACGGAGTTCATTCCCATATCTAAGCACCAACCAGACCGAGGGTTGTGGCAGCAGGACTGACA
GCACACAGAGGGGGACCAAGCCGATCCTCA
Found at i:20806143 original size:26 final size:26
Alignment explanation
Indices: 20806113--20806165 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20806103 GTTGGCTTAG
20806113 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
20806139 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
20806165 G
1 G
20806166 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:20806348 original size:196 final size:195
Alignment explanation
Indices: 20806005--20806532 Score: 634
Period size: 196 Copynumber: 2.7 Consensus size: 195
20805995 GAGGGTTGTG
* ** * *
20806005 GCAGCAGGATCGACAGCACGAAGGGGGGATCAAGCCGAT-TCTCGGCTTGC-CTATTCTACCTCT
1 GCAGCAGGATCGACAGCACGAAGGGGGGACCGGGCCGATCCCT-GGCTTGCACTATTCTGCCTCT
* *
20806068 CTGGCCGGTTGAGCACCCGTATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
65 CTGGCC-GTTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCAT
* * * * * *
20806133 GTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGATTGGACCGAGGGTTGCGGTAACAGGA
128 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCAGCAACAGGA
20806198 CCA
193 CCA
* * *
20806201 GTAGTAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCACT-TTCTGCCTCTC
1 GCAGCAGGATCGACAGCACGAAGGGGGGACCGGGCCGATCCCTGGCTTGCACTATTCTGCCTCTC
* * *
20806265 TGGCCTGTTGAGCACCCGTACGCTCGTTTTGTGGGTTGGTTTAGGCATACAGAGTTCCTTCCATG
66 TGGCC-GTTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCATG
* * **
20806330 TCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCGGATCGAACCGAGGGTTGTAGCAGTAGGAC
129 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCAGCAACAGGAC
20806395 CA
194 CA
* * * * *
20806397 GCAGCAGGATCAACAGCACGTAGGGGGGACCGGGTCGATCCCCGACTT--ACGTATTCTGCCTCT
1 GCAGCAGGATCGACAGCACGAAGGGGGGACCGGGCCGATCCCTGGCTTGCAC-TATTCTGCCTCT
** * * * * *
20806460 CCAGTCGACTGAGCACCCGCACGCTCGTTTCGTTGGTTGGCTAAGGCATACGTAGTTCATTCCAT
65 CTGGCCG-TTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACG-AGTTCATTCCAT
20806525 GTCTAAGC
128 GTCTAAGC
20806533 CCCAGTCAGA
Statistics
Matches: 284, Mismatches: 42, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
194 2 0.01
195 3 0.01
196 275 0.97
197 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (195 bp):
GCAGCAGGATCGACAGCACGAAGGGGGGACCGGGCCGATCCCTGGCTTGCACTATTCTGCCTCTC
TGGCCGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCATGTC
TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCAGCAACAGGACCA
Found at i:20808197 original size:159 final size:159
Alignment explanation
Indices: 20807885--20808337 Score: 502
Period size: 159 Copynumber: 2.9 Consensus size: 159
20807875 AGTAGGACCA
* * * * * *
20807885 GCAGCAGGATCGACAGCATGCAGGGGGGACCTGGCCAATCCTCAGCTTGCGCATTCTGCCTC-TC
1 GCAGCAAGACCGACAGCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTC
* * *
20807949 TGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATT-CCAT
66 -GACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTACGCATATGAAGTTCATTCCCAT
* *
20808013 GTCTAAGCCCCAGCCGGACTGAGGGTTGTG
130 GTCTAAGACCCAACCGGACTGAGGGTTGTG
* * * *
20808043 GCAGCAAGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCTTGGCTTGCGCATTATGCCTCTT
1 GCAGCAAGACCGACAGCACGCAG-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTT
* * * *
20808108 CGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCA-
65 CGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTACGCATATGAAGTTCATTCCCAT
* * * *
20808172 GTCTAGGATCGAATCGGA-TCGAGGGTTGTG
130 GTCTAAGACCCAACCGGACT-GAGGGTTGTG
* * * * * * * * * * *
20808202 GTAGTAGGATCTATAGCACGCAGGAGGGGACTGGGCCGGTCCCCGACTTGCGCATTCTGCCTCTC
1 GCAGCAAGACCGACAGCACGCAGG-GGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTT
* **
20808267 CGATCGGCTGAGCGCCCGCACGCTTATTTCGTGGGTTGGCTTACGCATATGAAGTTCATT-CCAT
65 CGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTACGCATATGAAGTTCATTCCCAT
20808331 GTCTAAG
130 GTCTAAG
20808338 CATACGGAGT
Statistics
Matches: 244, Mismatches: 45, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
158 24 0.10
159 215 0.88
160 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.24
Consensus pattern (159 bp):
GCAGCAAGACCGACAGCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTC
GACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTACGCATATGAAGTTCATTCCCATG
TCTAAGACCCAACCGGACTGAGGGTTGTG
Found at i:20809441 original size:158 final size:157
Alignment explanation
Indices: 20809066--20809549 Score: 481
Period size: 158 Copynumber: 3.1 Consensus size: 157
20809056 AAGCATACAA
* *
20809066 AGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGAGTTGCGGCTACAGGATTGGCAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGAGTTGCGGC-ACAGGATCGGCAGCACGCAG
* * * * * *
20809131 AGGGGACCGGGCCGATCCCTGACTTACGCATTCTGCCTC-TCTGACCGGCTGAGCTCCCGCACGC
65 AGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTC-GATCGGCTCAGCACCAGCACGC
* *
20809195 CCGTTTCATGGGTTGGCTTAGGCATAGGG
129 CCGTTTCATGGGTTGACTTAGGCATACGG
* * * ** * * * *
20809224 AGTTTATT-CCATGTGTAAG-CCCCAGCCGGACTGAGGGTTGTGGCAACAGGACCGGCAGCACGC
1 AGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGAGTTGCGGC-ACAGGATCGGCAGCACGC
* * *
20809287 AGAGGGGACTGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCACCAGTACG
63 AGAGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGGCTCAGCACCAGCACG
** *
20809352 CTTGTTTCATGGGTTGACTTATGCATACGG
128 CCCGTTTCATGGGTTGACTTAGGCATACGG
* * *
20809382 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGAGTTGCGGCAGTAGGATCGACAGCACGCA-
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGAGTTGCGGCA-CAGGATCGGCAGCACGCAG
* * * * * * * * * *
20809446 AGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGTCTCTCCGATCGACTGAACGCCCGCATGC
65 A-GGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGGCTCAGCACCAGCACGC
* * ** * *
20809511 TCATTTTGTGGGTTGGCTTAGGCATATGG
129 CCGTTTCATGGGTTGACTTAGGCATACGG
20809540 AGTTCATTCC
1 AGTTCATTCC
20809550 ATGGCTAAGC
Statistics
Matches: 261, Mismatches: 58, Indels: 14
0.78 0.17 0.04
Matches are distributed among these distances:
157 7 0.03
158 247 0.95
159 7 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGAGTTGCGGCACAGGATCGGCAGCACGCAGA
GGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGGCTCAGCACCAGCACGCCC
GTTTCATGGGTTGACTTAGGCATACGG
Found at i:20809562 original size:26 final size:26
Alignment explanation
Indices: 20809532--20809636 Score: 119
Period size: 26 Copynumber: 4.0 Consensus size: 26
20809522 GTTGGCTTAG
* *
20809532 GCATATGGAGTTCATTCCATGGCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
20809558 GCATACGGAGTTCATTCC-TAGTCT-A
1 GCATACGGAGTTCATTCCAT-GTCTAA
*
20809583 GACATACGGAGTTCATCCCCA-GTCTAA
1 G-CATACGGAGTTCAT-TCCATGTCTAA
20809610 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
20809636 G
1 G
20809637 ATCGGACCGG
Statistics
Matches: 69, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
25 3 0.04
26 62 0.90
27 4 0.06
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:20809898 original size:158 final size:159
Alignment explanation
Indices: 20809610--20810741 Score: 774
Period size: 158 Copynumber: 7.2 Consensus size: 159
20809600 CCCAGTCTAA
** * * * ** *
20809610 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACCGGACCGAGGGTTGCGACAGAAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGATCGG
* ** * *
20809673 CAGCATGCAG-GGGGGACCGGGCCGATCCTCGGCTTGCACATTTTGCCTCTCC-GACTGGTTGAG
64 CAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGTGCATTATGCCTCTCCGGTC-GGTTGAG
* * *
20809736 CGCCCGCACGCCCGTTTCGTGTGTTGGCCTAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
20809768 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAAGGTTGTGGCAGCGGGA-CTGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATC-GGC
* * * * * *
20809832 AGCACGTAGAGGGGGATCGGGCTGATCC-CGGCTTGCT-CATTATGCCTCTTCGGTCGGGTCAGC
65 AGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTG-TGCATTATGCCTCTCCGGTCGGTTGAGC
* * * *
20809895 GCCCGCATGCTCGTTTCATGGGTTGACTTAT
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *** ** * * * *
20809926 GCATACAGAGTTCATTCCCA-GTCTAA-AATCAGACTAGATCGAGGGTTGCGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGATCGG
* * * * * * * *
20809989 CAGCATGCAGA--AGGACCGGACCGATCCCCGGCTTGTGCATTCTACCTCTCCGATCGATTGAGC
64 CAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGTGCATTATGCCTCTCCGGTCGGTTGAGC
* * *
20810052 ACCCGCATGCTTGTTTCGTGGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
20810083 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTAGCAGTGGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGGCA
* * * * * * *
20810148 GCACGCGGAAGGGTACCAGGCCGATCCTCGGCTTGTGCATTATGCCTCTCCGGCCAGTTCAGCGC
66 GCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGTGCATTATGCCTCTCCGGTCGGTTGAGCGC
20810213 CCGCACGCTCGTTTCGTGGGTTGTG-TTAG
131 CCGCACGCTCGTTTCGTGGGTTG-GCTTAG
* **** * ** *
20810242 GCATACGGAGTTCATTCCCA-ATCTAAG-ATTGGATCGGACCGAGGGTTGAAGCAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGATCGG
* * * * * * * ** *
20810305 TAGCACGCAG-TGGGGACCGGGTCGATCCTTGGCTTTTGCATTCTGCCTCTCCGATCGACTGAGT
64 CAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGTGCATTATGCCTCTCCGGTCGGTTGAGC
* * * * * *
20810369 GCCCGTACACCCGTTTCATGAGTTAGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * **
20810400 GCATAGGGAATTCATTCCATGTCTAAACCCCAGCCGGACTGAGGGTTGTGGCAATGGGA-CTGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATC-GGC
* * * * * * ** ** * * * * * *
20810464 AACACGTAAAAGAGGACCAGGCCGATCCTCAACTTACGCATTATGCCTCTTCAGCCGGGTCAGTG
65 AGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGTGCATTATGCCTCTCCGGTCGGTTGAGCG
* * ** * * *
20810529 CCCGTACACTCGTTTTATGGGTTGACATAT
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * *
20810559 GCATACAGG-GTTCATTCCAAGTCTAAG-ATCAGATCGGACTGAGGGTTGTGGTAGCAGGATCGA
1 GCATAC-GGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGATCGG
* * ** * * * * * * * *
20810622 CAACACACAG-GGGGGACCAAGTCGATCCCCTGCTTGCGGATTCTGACTCTCCGG-CCGTCTGAG
64 CAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGTGCATTATGCCTCTCCGGTCGGT-TGAG
*
20810685 CGCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
20810717 GCATACGGAGTTCATTCCATGTCTA
1 GCATACGGAGTTCATTCCATGTCTA
20810742 GGCATACAAA
Statistics
Matches: 745, Mismatches: 201, Indels: 56
0.74 0.20 0.06
Matches are distributed among these distances:
156 16 0.02
157 122 0.16
158 345 0.46
159 255 0.34
160 7 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGGCA
GCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGTGCATTATGCCTCTCCGGTCGGTTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20810485 original size:317 final size:315
Alignment explanation
Indices: 20809610--20810741 Score: 1184
Period size: 317 Copynumber: 3.6 Consensus size: 315
20809600 CCCAGTCTAA
* * * * *
20809610 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGAAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTG-GGCAGCAGGATCGACA
* * * * **
20809675 GCATGCAGGGGGGACCGGGCCGATCCTCGGCTTGCACATTTTGCCTCTCCGA-CTGGTTGAGCGC
65 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATC-GACTGAGCGC
* * * *
20809739 CCGCACGCCCGTTTCGTGTGTTGGCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
129 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * * * * *
20809804 GACCGAAGGTTGTGGCAGCGGGACTGGCAGCACGTAGAGGGGGATCGGGCTGATCC-CGGCTTGC
194 GACTGAGGGTTGTGGCAGTGGGACTGGCAGCACGTAGA-AGGGACCAGGCCGATCCTCGGCTTG-
* *
20809868 T-CATTATGCCTCTTCGGTCGGGTCAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAT
257 TGCATTATGCCTCTTCGGCCGGGTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAT
* * * * *
20809926 GCATACAGAGTTCATTCCCAGTCTAAAATCAGA-CTAGATCGAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGATC-GGACCGAGGGTTG-GGCAGCAGGATCGAC
* ** * * * * *
20809990 AGCATGCA-GAAGGACCGGACCGATCCCCGGCTTGTGCATTCTACCTCTCCGATCGATTGAGCAC
64 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGC
* **
20810054 CCGCATGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
129 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * **
20810119 GA-TCGAGGGTTGTAGCAGTGGGA-TCGACAGCACGCGGAAGGGTACCAGGCCGATCCTCGGCTT
194 GACT-GAGGGTTGTGGCAGTGGGACT-GGCAGCACGTAGAAGGG-ACCAGGCCGATCCTCGGCTT
* * * * ** *
20810182 GTGCATTATGCCTCTCCGGCCAGTTCAGCGCCCGCACGCTCGTTTCGTGGGTTGTGTTAG
256 GTGCATTATGCCTCTTCGGCCGGGTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAT
** * **
20810242 GCATACGGAGTTCATTCCCAATCTAAGATTGGATCGGACCGAGGGTTGAAGCAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTG-GGCAGCAGGATCGACA
* * ** ** *
20810307 GCACGCAGTGGGGACCGGGTCGATCCTTGGCTTTTGCATTCTGCCTCTCCGATCGACTGAGTGCC
65 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCC
* * * * * * * *
20810372 CGTACACCCGTTTCATGAGTTAGCTTAGGCATAGGGAATTCATTCCATGTCTAAACCCCAGCCGG
130 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * * ** **
20810437 ACTGAGGGTTGTGGCAATGGGACTGGCAACACGTAAAAGAGGACCAGGCCGATCCTCAACTTACG
195 ACTGAGGGTTGTGGCAGTGGGACTGGCAGCACGTAGAAG-GGACCAGGCCGATCCTCGGCTTGTG
* * * * * *
20810502 CATTATGCCTCTTCAGCCGGGTCAGTGCCCGTACACTCGTTTTATGGGTTGACATAT
259 CATTATGCCTCTTCGGCCGGGTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAT
* *
20810559 GCATACAGG-GTTCATT-CCAAGTCTAAGATCAGATCGGACTGAGGGTTGTGGTAGCAGGATCGA
1 GCATAC-GGAGTTCATTCCCAA-TCTAAGATCAGATCGGACCGAGGGTTG-GGCAGCAGGATCGA
* * ** * * * * ** *
20810622 CAACACACAGGGGGGACCAAGTCGATCCCCTGCTTGCGGATTCTGACTCTCCGGCCGTCTGAGCG
63 CAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCG
* *
20810687 CCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
128 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
20810742 GGCATACAAA
Statistics
Matches: 668, Mismatches: 134, Indels: 27
0.81 0.16 0.03
Matches are distributed among these distances:
314 4 0.01
315 142 0.21
316 181 0.27
317 335 0.50
318 6 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (315 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGGGCAGCAGGATCGACAG
CACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCC
GCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
CTGAGGGTTGTGGCAGTGGGACTGGCAGCACGTAGAAGGGACCAGGCCGATCCTCGGCTTGTGCA
TTATGCCTCTTCGGCCGGGTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAT
Found at i:20811456 original size:25 final size:26
Alignment explanation
Indices: 20811428--20811477 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20811418 GTGACTTAGG
*
20811428 CATATGGAG-TCATCCCCAGTCTAAC
1 CATATGGAGTTCATCCCCAATCTAAC
*
20811453 CATATGGAGTTCATTCCCAATCTAA
1 CATATGGAGTTCATCCCCAATCTAA
20811478 GATCAGACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (26 bp):
CATATGGAGTTCATCCCCAATCTAAC
Found at i:20811768 original size:159 final size:156
Alignment explanation
Indices: 20811592--20812644 Score: 598
Period size: 159 Copynumber: 6.5 Consensus size: 156
20811582 CACACACCCG
* *
20811592 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
* * *
20811657 GTGGCAGCAGGACCGACAGCACGTAAAGGGGGACCGGGTCGATCCTCGGCTTACGCATTATGCCT
66 GTGGCAGCAGGATCGACAGCACG-AAAGGGGGACCGGG-CGATCC-CGACTTATGCATTATGCCT
* * * *
20811722 CTTCGGTCGGCTCAGCACTTGCATGCTCA
128 CTCCGGTCGGCTGAGCACTCGCACGCTCA
* ** * ** *
20811751 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCA-ATCTAAG-ATCAGATTGGACCGAGGG
1 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGG
* * * * * * *
20811814 TTGCGACAACAGGATCGACAGCACG-CAGGAGGGACCGGGCCGGTCCCTGACTTGTGCATTCTGC
64 TTGTGGCAGCAGGATCGACAGCACGAAAGG-GGGACCGGG-CGATCCC-GACTTATGCATTATGC
*** * *
20811878 CTCTCCAACCGACTGAGCGCTCGCACGCTCA
126 CTCTCCGGTCGGCTGAGCACTCGCACGCTCA
* * * **
20811909 TTTCATGGGTTGGCTTAGGTAT-GCGGAGTTCATTCCATGTCTATGCCCTAGTCGGACTAAGGGT
1 TTTCATGGGTTGGCTTAGGCATAG-GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGT
* * * **
20811973 TGTGGCAGCAGGATCGACAGCATGCAGAGAGGGATTGGGCTGATCCCCGACTTATGCATTATGCC
65 TGTGGCAGCAGGATCGACAGCACG-AAAGGGGGACCGGGC-GAT-CCCGACTTATGCATTATGCC
* * *
20812038 TCTCCGGTCGGCTGAGCACCCCCACGCTCG
127 TCTCCGGTCGGCTGAGCACTCGCACGCTCA
* * * ** ** * **
20812068 TTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCGGTCTAA-CCATA-TGGAGTTAATTCTT
1 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG-G---A--CCG
* * * * **
20812131 A-GTTTAAGATCGGACCAGACCGAGGTTTGCAGCAGTAGGATCGGTAGCACGTAGGGGGGTCGGG
60 AGGGTT--G-T-GG--CAG--C-AGG-AT-C-G-A-CAGCA-C-G-A--A---AGGGGGACCGGG
* ** * * * * ** * * *
20812195 CCGATCCCCAGCTTGCGCTTTCTGCATCTCCGATCGGCTGAGCGTTCGCACACCCG
103 -CGATCCCGA-CTTATGCATTATGCCTCTCCGGTCGGCTGAGCACTCGCACGCTCA
* * *
20812251 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGGGGGTT
1 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
* * *
20812316 GTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCAGGCTGATCCCCGACTTACGCATTATGCCT
66 GTGGCAGCAGGATCGACAGCACG-AAAGGGGGACCGGGC-GAT-CCCGACTTATGCATTATGCCT
* * * * * *
20812381 CTTCGGCCGACTCAGCACCCGCATGCTCA
128 CTCCGGTCGGCTGAGCACTCGCACGCTCA
* * * ** * * *
20812410 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGATCGAACTGAGGG
1 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGG
* * * * * * * * * *
20812473 TTGCGACAACAGGATCGACAGCACGCAGGGGGGACCGAGCCGGTCCCCAGTT-TGCGCATTCTGC
64 TTGTGGCAGCAGGATCGACAGCACGAAAGGGGGACCG-GGCGATCCCGACTTAT--GCATTATGC
* *** * *
20812537 CTTTCCAACCGACTGAGCGCTCGCACGCTCA
126 CTCTCCGGTCGGCTGAGCACTCGCACGCTCA
* * *
20812568 TTTCGTGGGTTGGCTTAGGTAT-GTGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGT
1 TTTCATGGGTTGGCTTAGGCATAG-GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGT
20812632 TGTGGCAGCAGGA
65 TGTGGCAGCAGGA
20812645 CCGGCAGCGA
Statistics
Matches: 668, Mismatches: 172, Indels: 109
0.70 0.18 0.11
Matches are distributed among these distances:
157 18 0.03
158 223 0.33
159 264 0.40
160 15 0.02
161 1 0.00
162 3 0.00
163 3 0.00
164 3 0.00
165 2 0.00
166 5 0.01
167 1 0.00
168 4 0.01
169 1 0.00
170 2 0.00
171 6 0.01
172 2 0.00
173 1 0.00
174 4 0.01
175 1 0.00
176 5 0.01
177 1 0.00
178 3 0.00
179 2 0.00
180 3 0.00
181 1 0.00
182 4 0.01
183 84 0.13
184 5 0.01
185 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
GTGGCAGCAGGATCGACAGCACGAAAGGGGGACCGGGCGATCCCGACTTATGCATTATGCCTCTC
CGGTCGGCTGAGCACTCGCACGCTCA
Found at i:20812034 original size:317 final size:317
Alignment explanation
Indices: 20811453--20812771 Score: 1250
Period size: 317 Copynumber: 4.0 Consensus size: 317
20811443 CCAGTCTAAC
* * * * *
20811453 CATATGGAGTTCATTCCCAATCTAAGATCAGACCAAGA-CGAGGGTTGCGACAGCAGGATCGATA
1 CATACGGAGTTCATTCCCAATCTAAGATCAGATC-GGACCGAGGGTTGCGACAACAGGATCGACA
* * * * * *** *
20811517 GCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCACTTTCTGCGTCTTCGGCCCG-CTGAACGC
65 GCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTC-TCCAACCGACTGAGCGC
* * * *
20811581 CCACACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
129 TCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * * * *
20811646 GACCGAGGGTTGTGGCAGCAGGACCGACAGCACGTAAAGGGGGACCGGG-TCGATCCTCGGCTTA
194 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGAGGGACCGGGCT-GATCCCCGACTTA
* ** *
20811710 CGCATTATGCCTCTTCGGTCGGCTCAGCACTTGCATGCTCATTTCGTGGGTTGGCTTAGG
258 CGCATTATGCCTCTCCGGTCGGCTCAGCACCCGCATGCTCATTTCGTGGGTTGACTTAGG
* *
20811770 CATACAGAGTTCATTCCCAATCTAAGATCAGATTGGACCGAGGGTTGCGACAACAGGATCGACAG
1 CATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCGACAACAGGATCGACAG
* * * *
20811835 CACGCAGGAGGGACCGGGCCGGT-CCCTGACTTGTGCATTCTGCCTCTCCAACCGACTGAGCGCT
66 CACGCAGGGGGGACCGGGCCGATCCCCAG-CTTGCGCATTCTGCCTCTCCAACCGACTGAGCGCT
* * * * * *
20811899 CGCACGCTCATTTCATGGGTTGGCTTAGGTAT-GCGGAGTTCATTCCATGTCTATGCCCTAGTCG
130 CGCACACCCATTTCATGGGTTGGCTTAGGCATAG-GGAGTTCATTCCATGTCTAAGCCCCAGCCG
** * ** *
20811963 GACTAAGGGTTGTGGCAGCAGGATCGACAGCATGCAGAGAGGGATTGGGCTGATCCCCGACTTAT
194 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGAGGGACCGGGCTGATCCCCGACTTAC
* * * * *
20812028 GCATTATGCCTCTCCGGTCGGCTGAGCACCCCCACGCTCGTTTCATGGGTTGACTTAGG
259 GCATTATGCCTCTCCGGTCGGCTCAGCACCCGCATGCTCATTTCGTGGGTTGACTTAGG
* * *
20812087 CATATGGAGTTCATCCCCGGTCTAACCATATGGAGTTAATTCTTAGTTTAAGATCGGACCAGACC
1 CATACGGAGTTCAT-TCC---C-AATC-TA---AG---A-TC--------AGATCGGACC-GA--
* * ** * ** * * *
20812152 GAGGTTTG-CAGCAGTAGGATCGGTAGCACGTAGGGGGG-TCGGGCCGATCCCCAGCTTGCGCTT
42 GGGTTGCGACAAC---AGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCAT
* * * * * *
20812215 TCTGCATCTCCGATCGGCTGAGCGTTCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
104 TCTGCCTCTCCAACCGACTGAGCGCTCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGT
* * *
20812280 TCATTCCATGTCTAAGCCCCAGCCGGACTGGGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGG
169 TCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGA
* * * *
20812345 GGGACCAGGCTGATCCCCGACTTACGCATTATGCCTCTTCGGCCGACTCAGCACCCGCATGCTCA
234 GGGACCGGGCTGATCCCCGACTTACGCATTATGCCTCTCCGGTCGGCTCAGCACCCGCATGCTCA
20812410 TTTCGTGGGTTGACTTAGG
299 TTTCGTGGGTTGACTTAGG
* * * *
20812429 CATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACTGAGGGTTGCGACAACAGGATCGACAG
1 CATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCGACAACAGGATCGACAG
* * * *
20812494 CACGCAGGGGGGACCGAGCCGGTCCCCAGTTTGCGCATTCTGCCTTTCCAACCGACTGAGCGCTC
66 CACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCAACCGACTGAGCGCTC
* * * * * *
20812559 GCACGCTCATTTCGTGGGTTGGCTTAGGTAT-GTGGAGTTCATTCCATGTCTAAGCCCTAGTCGG
131 GCACACCCATTTCATGGGTTGGCTTAGGCATAG-GGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* **
20812623 ACCGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATTGACAGCATGCAGAGAGGGATTGGGCTGAT
195 ACCGAGGGTTGTGGCAGCAGGATC-G-A-C---A--G-CA-C--GCAGAGAGGGACCGGGCTGAT
* * * * * * * * *
20812688 CCCCGACTTACGCATTATACCTCTCCGGTCGGCTGAACGCCCCCACGCTCGTTCCATGGGTTGAC
248 CCCCGACTTACGCATTATGCCTCTCCGGTCGGCTCAGCACCCGCATGCTCATTTCGTGGGTTGAC
20812753 TTAGG
313 TTAGG
20812758 CATACGGAGTTCAT
1 CATACGGAGTTCAT
20812772 CCCTAGTCTA
Statistics
Matches: 804, Mismatches: 149, Indels: 86
0.77 0.14 0.08
Matches are distributed among these distances:
316 33 0.04
317 378 0.47
318 8 0.01
319 4 0.00
320 3 0.00
321 8 0.01
322 3 0.00
323 3 0.00
325 1 0.00
326 4 0.00
327 1 0.00
329 92 0.11
330 3 0.00
333 2 0.00
336 2 0.00
337 2 0.00
338 10 0.01
339 2 0.00
340 3 0.00
341 6 0.01
342 212 0.26
343 24 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (317 bp):
CATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCGACAACAGGATCGACAG
CACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCAACCGACTGAGCGCTC
GCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
CCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGAGGGACCGGGCTGATCCCCGACTTACGC
ATTATGCCTCTCCGGTCGGCTCAGCACCCGCATGCTCATTTCGTGGGTTGACTTAGG
Found at i:20812618 original size:659 final size:664
Alignment explanation
Indices: 20811355--20813270 Score: 2223
Period size: 659 Copynumber: 2.9 Consensus size: 664
20811345 CCACCCGTTC
* * ** * ** *
20811355 GATCCCCGGCTTGCGCATCCTGCCTCTCTGGTTAGCTGAGCGCCCGGCACGCTCGTTTCATGGG-
1 GATCCCCGACTTACGCATTATGCCTCTCCGGTCGGCTGAGCGCCC-CCACGCTCGTTTCATGGGT
* *
20811419 TGACTTAGGCATATGGAG-TCATCCCCAGTCTAACCATATGGAGTTCATTCCCAATCTAAGATCA
65 TGACTTAGGCATATGGAGTTCATCCCCAGTCTAACCATATGGAGTTCATTCCCAGTCTAAGATCG
*
20811483 GACCAAGA-CGAGGGTTGC-GACAGCAGGATCGATAGCACGTAGGGGGGACCGGGCCGATCCCCG
130 GACC-AGACCGAGGTTTGCAG-CAG-AGGATCGATAGCACGTAGGGGGG-CCGGGCCGATCCCCG
* * * ** * * *
20811546 GCTTGCACTTTCTGCGTCTTCGGCCCGCTGAACGCCCACACACCCGTTTCATGGGTTGGCTTAGG
191 GCTTGCGCTTTCTGCATCTCCGATCGGCTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGG
* *
20811611 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCGACAG
256 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
* * * * * * *
20811676 CACGTAAAGGGGGACCGGGTCGATCCTCGGCTTACGCATTATGCCTCTTCGGTCGGCTCAGCACT
321 CACGTAGAGGGGGACCGGCTCGATCCCCGACTTACGCATTATGCCTCTTCGGCCGACTCAGCACC
* * * *
20811741 TGCATGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGATTGG
386 CGCATGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGATCGA
* * *
20811806 ACCGAGGGTTGCGACAACAGGATCGACAGCACGCAGGAGGGACCGGGCCGGTCCCTGACTTGTGC
451 ACCGAGGGTTGCGACAACAGGATCGACAGCACGCAGGAGGGACCGAGCCGGTCCCAGACTTGCGC
20811871 ATTCTGCCTCTCCAACCGACTGAGCGCTCGCACGCTCATTTCATGGGTTGGCTTAGGTATGCGGA
516 ATTCTGCCTCTCCAACCGACTGAGCGCTCGCACGCTCATTTCATGGGTTGGCTTAGGTATGCGGA
* *
20811936 GTTCATTCCATGTCTATGCCCTAGTCGGACTAAGGGTTGT-G-GC-A-GCA-G-GATCGACAGCA
581 GTTCATTCCATGTCTAAGCCCTAGTCGGACCAAGGGTTGTGGAGCGACGCACGAGATCGACAGCA
20811995 TGCAGAGAGGGATTGGGCT
646 TGCAGAGAGGGATTGGGCT
* *
20812014 GATCCCCGACTTATGCATTATGCCTCTCCGGTCGGCTGAGCACCCCCACGCTCGTTTCATGGGTT
1 GATCCCCGACTTACGCATTATGCCTCTCCGGTCGGCTGAGCGCCCCCACGCTCGTTTCATGGGTT
* * ** *
20812079 GACTTAGGCATATGGAGTTCATCCCCGGTCTAACCATATGGAGTTAATTCTTAGTTTAAGATCGG
66 GACTTAGGCATATGGAGTTCATCCCCAGTCTAACCATATGGAGTTCATTCCCAGTCTAAGATCGG
* * *
20812144 ACCAGACCGAGGTTTGCAGCAGTAGGATCGGTAGCACGTAGGGGGGTCGGGCCGATCCCCAGCTT
131 ACCAGACCGAGGTTTGCAGCAG-AGGATCGATAGCACGTAGGGGGGCCGGGCCGATCCCCGGCTT
**
20812209 GCGCTTTCTGCATCTCCGATCGGCTGAGCGTTCGCACACCCGTTTCATGGGTTGGCTTAGGCATA
195 GCGCTTTCTGCATCTCCGATCGGCTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATA
* *
20812274 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGGGGGTTGTGGCAGCAGGATCGACAGCACG
260 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACG
*
20812339 CAGAGGGGGACCAGGCT-GATCCCCGACTTACGCATTATGCCTCTTCGGCCGACTCAGCACCCGC
325 TAGAGGGGGACC-GGCTCGATCCCCGACTTACGCATTATGCCTCTTCGGCCGACTCAGCACCCGC
* * * *
20812403 ATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACT
389 ATGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGATCGAACC
* *
20812468 GAGGGTTGCGACAACAGGATCGACAGCACGCAGGGGGGACCGAGCCGGTCCCCAG-TTTGCGCAT
454 GAGGGTTGCGACAACAGGATCGACAGCACGCAGGAGGGACCGAGCCGGT-CCCAGACTTGCGCAT
* * *
20812532 TCTGCCTTTCCAACCGACTGAGCGCTCGCACGCTCATTTCGTGGGTTGGCTTAGGTATGTGGAGT
518 TCTGCCTCTCCAACCGACTGAGCGCTCGCACGCTCATTTCATGGGTTGGCTTAGGTATGCGGAGT
* *
20812597 TCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATTGAC
583 TCATTCCATGTCTAAGCCCTAGTCGGACCAAGGGTTGTGG-AGC--GA-C-GCA-CGAGATCGAC
20812662 AGCATGCAGAGAGGGATTGGGCT
642 AGCATGCAGAGAGGGATTGGGCT
* * *
20812685 GATCCCCGACTTACGCATTATACCTCTCCGGTCGGCTGAACGCCCCCACGCTCGTTCCATGGGTT
1 GATCCCCGACTTACGCATTATGCCTCTCCGGTCGGCTGAGCGCCCCCACGCTCGTTTCATGGGTT
* * * *
20812750 GACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGG
66 GACTTAGGCATATGGAGTTCATCCCCAGTCTAACCATATGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * *
20812815 ATC-GTACCGAGGGTTGTGATAGCA-A-GATCGATAGCATAC-AAGGGGGACCGGGTCGATCCCT
131 ACCAG-ACCGA-GGTT-TG-CAGCAGAGGATCGATAGC--ACGTAGGGGGGCCGGGCCGATCCCC
* * * * * * * *
20812876 GGCTCGTGCATTT-TGCCTCTCC-ACTTGGCTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTT
190 GGCTTGCGC-TTTCTGCATCTCCGA-TCGGCTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTT
* * *
20812939 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGGGATCGG
253 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * **
20813004 TAGCACGTAGAGGGGGA-----TCGA---CAG-C--ATGCA-GAGGAGTTCATT---CCG-CTCA
318 CAGCACGTAGAGGGGGACCGGCTCGATCCCCGACTTACGCATTATG-CCTC-TTCGGCCGACTCA
* * * * * * *
20813053 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCATTCTAAGATTAG
381 GCACCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAG
* * * * * * ** * *
20813118 ACCGGACCAAGGGTTGC-AGTAACAGGATCGACAGCACGTAGGGGGGACC-AGGCCAATCTC-GG
446 ATCGAACCGAGGGTTGCGA-CAACAGGATCGACAGCACGCAGGAGGGACCGA-GCCGGTCCCAGA
* * **** * * * * * *
20813180 CTTGTGCATTCTGCCTCTTCGGTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGATTAGGC
509 CTTGCGCATTCTGCCTCTCCAACCGACTGAGCGCTCGCACGCTCATTTCATGGGTTGGCTTAGGT
*
20813245 ATACGGAGTTCATTCCATGTCTAAGC
574 ATGCGGAGTTCATTCCATGTCTAAGC
20813271 ATACGAAGTT
Statistics
Matches: 1084, Mismatches: 141, Indels: 66
0.84 0.11 0.05
Matches are distributed among these distances:
656 1 0.00
657 80 0.07
658 124 0.11
659 453 0.42
660 87 0.08
661 7 0.01
662 4 0.00
663 1 0.00
664 2 0.00
665 1 0.00
666 1 0.00
667 2 0.00
668 3 0.00
670 2 0.00
671 162 0.15
672 143 0.13
673 7 0.01
674 4 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (664 bp):
GATCCCCGACTTACGCATTATGCCTCTCCGGTCGGCTGAGCGCCCCCACGCTCGTTTCATGGGTT
GACTTAGGCATATGGAGTTCATCCCCAGTCTAACCATATGGAGTTCATTCCCAGTCTAAGATCGG
ACCAGACCGAGGTTTGCAGCAGAGGATCGATAGCACGTAGGGGGGCCGGGCCGATCCCCGGCTTG
CGCTTTCTGCATCTCCGATCGGCTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGT
AGAGGGGGACCGGCTCGATCCCCGACTTACGCATTATGCCTCTTCGGCCGACTCAGCACCCGCAT
GCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGATCGAACCGA
GGGTTGCGACAACAGGATCGACAGCACGCAGGAGGGACCGAGCCGGTCCCAGACTTGCGCATTCT
GCCTCTCCAACCGACTGAGCGCTCGCACGCTCATTTCATGGGTTGGCTTAGGTATGCGGAGTTCA
TTCCATGTCTAAGCCCTAGTCGGACCAAGGGTTGTGGAGCGACGCACGAGATCGACAGCATGCAG
AGAGGGATTGGGCT
Found at i:20812644 original size:158 final size:156
Alignment explanation
Indices: 20812148--20812644 Score: 464
Period size: 158 Copynumber: 3.1 Consensus size: 156
20812138 GATCGGACCA
* * * ** * * *
20812148 GACCGAGGTTTGCAGCAGTAGGATCGGTAGCACGTAGGGGGG-TCGGGCCGATCCCCAGCTTGCG
1 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCG
* * * * * * * * * *
20812212 CTTTCTGCATCTCCGATCGGCTGAGCGTTCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGG
66 CATTCTGCCTTTCCGACCGACTGAGCGCTCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT-GGG
*
20812277 AGTTCATTCCATGTCTAAGCCCCAGCCG
130 AGTTCATTCCATGTCTAAG-CCCAGTCG
* * * *
20812305 GACTGGGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACC-AGGCTGATCCCC-GACTT
1 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG-GGGGGACCGA-GCCGATCCCCAG-CTT
* * * * * * * *
20812368 ACGCATTATGCCTCTT-CGGCCGACTCAGCACCCGCATGCTCATTTCGTGGGTTGACTTAGGCAT
63 GCGCATTCTGCCT-TTCCGACCGACTGAGCGCTCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
* ** *
20812432 ACGGAGTTCATTCCCA-GTCTAAGATCGGATCG
127 -GGGAGTTCATT-CCATGTCTAAGCCCAG-TCG
* * * * * *
20812464 AACTGAGGGTTGCGACAACAGGATCGACAGCACGCAGGGGGGACCGAGCCGGTCCCCAGTTTGCG
1 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCG
* *
20812529 CATTCTGCCTTTCCAACCGACTGAGCGCTCGCACGCTCATTTCGTGGGTTGGCTTAGGTATGTGG
66 CATTCTGCCTTTCCGACCGACTGAGCGCTCGCACGCTCATTTCGTGGGTTGGCTTAGGCATG-GG
20812594 AGTTCATTCCATGTCTAAGCCCTAGTCG
130 AGTTCATTCCATGTCTAAGCCC-AGTCG
*
20812622 GACCGAGGGTTGTGGCAGCAGGA
1 GACCGAGGGTTGCGGCAGCAGGA
20812645 CCGGCAGCGA
Statistics
Matches: 265, Mismatches: 62, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
157 33 0.12
158 116 0.44
159 112 0.42
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCG
CATTCTGCCTTTCCGACCGACTGAGCGCTCGCACGCTCATTTCGTGGGTTGGCTTAGGCATGGGA
GTTCATTCCATGTCTAAGCCCAGTCG
Found at i:20812786 original size:26 final size:26
Alignment explanation
Indices: 20812757--20812809 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20812747 GTTGACTTAG
*
20812757 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
20812783 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20812809 G
1 G
20812810 ATCGGATCGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20813280 original size:26 final size:26
Alignment explanation
Indices: 20813243--20813295 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20813233 GTTGGATTAG
*
20813243 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
20813269 GCATACGAAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20813295 G
1 G
20813296 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20814016 original size:26 final size:26
Alignment explanation
Indices: 20813964--20814016 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20813954 GTTGACTTAG
**
20813964 GCATACGGAGTTCATCCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
*
20813990 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
20814016 G
1 G
20814017 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:20814291 original size:159 final size:160
Alignment explanation
Indices: 20814079--20814493 Score: 412
Period size: 159 Copynumber: 2.6 Consensus size: 160
20814069 TCGGGTTGAT
* * * * * *
20814079 CCCGGCTTGCGCATTCTGCCTCTCCGACC-AGCTGAGTGACCGAACGCCCGTTTCGTGGGTTGGC
1 CCCGGCTTGCGCATTATGCCTCTCCGACCGA-CTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGC
* * * * *
20814143 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCGGGA-
65 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTGCGGCAACAGGAT
*
20814206 CTGACAGCACGTAGAGG-GGGACC-GAACCGATC
130 C-GACAGCACGCAG-GGTGGGACCAG-ACCGATC
* * * ** *
20814238 CCCGGCTTGGGCATTATGCCTCTCCGATCGACTCAGCGGTCGCACGCTCGTTTCGTGGGTTGACT
1 CCCGGCTTGCGCATTATGCCTCTCCGACCGACTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
*** * * *
20814303 TAGGCATACAAAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCAATGGTTGCGGCAACAGGAT
66 TAGGCATAGGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCAAGGGTTGCGGCAACAGGAT
* * * * *
20814366 CGATAGCACGCAGGGTGGGATCAGGCTGGTC
130 CGACAGCACGCAGGGTGGGACCAGACCGATC
* * * * * *
20814397 CCCGGCTTGCGCTTTCTGTCTCTTCGACCGGCTAAGTGCCCGCACGCTCGTTTCGTGGGTTGGCT
1 CCCGGCTTGCGCATTATGCCTCTCCGACCGACTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
*
20814462 TAGGCATAGGGAGTTGATTCCATGTCTAAGCA
66 TAGGCATAGGGAGTTCATTCCATGTCTAAGCA
20814494 TATGGAGTTC
Statistics
Matches: 205, Mismatches: 43, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
158 8 0.04
159 190 0.93
160 7 0.03
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (160 bp):
CCCGGCTTGCGCATTATGCCTCTCCGACCGACTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
TAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTGCGGCAACAGGATC
GACAGCACGCAGGGTGGGACCAGACCGATC
Found at i:20814501 original size:26 final size:26
Alignment explanation
Indices: 20814465--20814517 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20814455 GTTGGCTTAG
*
20814465 GCATAGGGAGTTGATT-CCATGTCTAA
1 GCATAGGGAGTTCATTCCCA-GTCTAA
*
20814491 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
20814517 G
1 G
20814518 ATCGAACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCAGTCTAA
Found at i:20815019 original size:25 final size:26
Alignment explanation
Indices: 20814981--20815032 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
20814971 GTTGACTTAG
20814981 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
20815007 GCATAC-GAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
20815032 G
1 G
20815033 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:20815466 original size:158 final size:157
Alignment explanation
Indices: 20815070--20815507 Score: 450
Period size: 159 Copynumber: 2.8 Consensus size: 157
20815060 CAGGATTGGT
* * * *
20815070 AGCACGCAAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCTGACTGAGCGC
1 AGCACGCAGGGGGGATCGGGTCGATCCC-GGCTTGCGCATTCTGCCTCTCCGGCTGACTAAGCGC
* * * * * * *
20815135 CCGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTTGCCG
65 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGACCTAGCCG
* * * * *
20815200 GAGTGAGGGTTGTGGCAGCGGGATTGAG
130 GACTGAGGGTTGGGGCAGCAGGATCGAC
* * * * * * * *
20815228 AGCACGCAGAGGGGGACCAGGTCGATCCCCGGCTTACGCATTATGCCTTTTCGG-TCGGCTCAGC
1 AGCACGCAG-GGGGGATCGGGTCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGGCT-GACTAAGC
* * * * * *
20815292 GTCCGCACGCTCGTTTCGTGGGTTGACTTATGCGTACGGAGTTCATT-CTTAGTATAAGATC-AG
63 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTATAAGACCTAG
* *
20815355 ACTGGACTGAGGGTTGGGGGAGCAGGATCGAC
127 -CCGGACTGAGGGTTGGGGCAGCAGGATCGAC
* *
20815387 AGCACACAGGGGGGATCGGGTCAATCCTCGGCTTGCGCATTCTGCCTCTCCGGCTGACTAAGCGC
1 AGCACGCAGGGGGGATCGGGTCGATCC-CGGCTTGCGCATTCTGCCTCTCCGGCTGACTAAGCGC
* * * *
20815452 CCGCACGCTTGTTTCATGGGTTGGCCTAGGCATACGGAGTTCATTCCATGTCTAAG
65 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAG
20815508 CATACAGAGT
Statistics
Matches: 222, Mismatches: 50, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 98 0.44
159 119 0.54
160 3 0.01
ACGTcount: A:0.17, C:0.26, G:0.32, T:0.24
Consensus pattern (157 bp):
AGCACGCAGGGGGGATCGGGTCGATCCCGGCTTGCGCATTCTGCCTCTCCGGCTGACTAAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGACCTAGCCGG
ACTGAGGGTTGGGGCAGCAGGATCGAC
Found at i:20816244 original size:26 final size:26
Alignment explanation
Indices: 20816215--20816267 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20816205 GTTGACTTAG
* *
20816215 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAATTAATCCCTAGTCTAA
*
20816241 GCATACGGAATTAATTCCTAGTCTAA
1 GCATACGGAATTAATCCCTAGTCTAA
20816267 G
1 G
20816268 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTAATCCCTAGTCTAA
Found at i:20816993 original size:171 final size:171
Alignment explanation
Indices: 20816680--20817016 Score: 392
Period size: 171 Copynumber: 2.0 Consensus size: 171
20816670 TTTGGCCGGC
* * * *
20816680 TGAGCGCCCGTTCGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
1 TGAGCGCCCGTACACTCGTTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAC
* * *
20816745 CGGATCGAACCGAGGGTTACGGTAGCAGGACCAACAACAGGATCGATAGCACACAGGGAGGGACC
66 CAGACCGAACCGAGGGTTACGGTAGCAGGACCAACAACAGGATCGACAGCACACAGGGAGGGACC
* * * *
20816810 GGGCCGATCCCCGACTTGCACATTTTGCCTCTCCGATTGAT
131 GAGCCAATCCCCGACTTACACATTATGCCTCTCCGATTGAT
* *
20816851 TGAGCGCCCGTACACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGC
1 TGAGCGCCCGTACACTCGTTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-
* * ** * * * *
20816915 CCCAG-CCGGACCGAGGGTTGTGGTAGCAGGACCAGCAGCGGGATCGACAGCACGCAGAGG-GGG
64 ACCAGACCGAACCGAGGGTTACGGTAGCAGGACCAACAACAGGATCGACAGCACACAG-GGAGGG
* * * * *
20816978 ATCTAGCTAATCCCCGGCTTACGCATTATGCCTCTCCGA
128 ACCGAGCCAATCCCCGACTTACACATTATGCCTCTCCGA
20817017 CCGGCTGAGC
Statistics
Matches: 137, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
170 3 0.02
171 130 0.95
172 4 0.03
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.22
Consensus pattern (171 bp):
TGAGCGCCCGTACACTCGTTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAC
CAGACCGAACCGAGGGTTACGGTAGCAGGACCAACAACAGGATCGACAGCACACAGGGAGGGACC
GAGCCAATCCCCGACTTACACATTATGCCTCTCCGATTGAT
Found at i:20817051 original size:171 final size:171
Alignment explanation
Indices: 20816692--20817084 Score: 369
Period size: 171 Copynumber: 2.3 Consensus size: 171
20816682 AGCGCCCGTT
* * * * *
20816692 CGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCG
1 CGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCAGACCGAACCG
* * *
20816757 AGGGTTACGGTAGCAGGACCAACAACAGGATCGATAGCACACAGGGAGGGACCGGGCCGATCCCC
66 AGGGTTACGGTAGCAGGACCAACAACAGGATCGACAGCACACAGGGAGGGACCGAGCCAATCCCC
* * ** * * *
20816822 GACTTGCACATTTTGCCTCTCCGATTGATTGAGCGCCCGTA
131 GACTTACACATTATGCCTCTCCGACCGACTGAGCACCCGCA
* * * *
20816863 CACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGAC
1 CGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ACCAGACCGAAC
** * * * * * * *
20816926 CGAGGGTTGTGGTAGCAGGACCAGCAGCGGGATCGACAGCACGCAGAGG-GGGATCTAGCTAATC
64 CGAGGGTTACGGTAGCAGGACCAACAACAGGATCGACAGCACACAG-GGAGGGACCGAGCCAATC
* * * * *
20816990 CCCGGCTTACGCATTATGCCTCTCCGACCGGCTGAGCATCTGCA
128 CCCGACTTACACATTATGCCTCTCCGACCGACTGAGCACCCGCA
* * * * * * * *
20817034 CGCTCATTTCATGGGTTGACTAAGGCATGCGGACTTCATCCCCAATCTAAG
1 CGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
20817085 CATATAGAGT
Statistics
Matches: 175, Mismatches: 43, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
170 3 0.02
171 165 0.94
172 7 0.04
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (171 bp):
CGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCAGACCGAACCG
AGGGTTACGGTAGCAGGACCAACAACAGGATCGACAGCACACAGGGAGGGACCGAGCCAATCCCC
GACTTACACATTATGCCTCTCCGACCGACTGAGCACCCGCA
Done.