Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 197 of 402
Found at i:20817588 original size:26 final size:26
Alignment explanation
Indices: 20817559--20817611 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20817549 GTTGGCTTAG
*
20817559 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
20817585 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20817611 G
1 G
20817612 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20822988 original size:26 final size:26
Alignment explanation
Indices: 20822952--20823004 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20822942 GTTGGCTTAG
20822952 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
20822978 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20823004 G
1 G
20823005 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20823202 original size:26 final size:26
Alignment explanation
Indices: 20823166--20823218 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20823156 GTTGACTTAG
20823166 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
20823192 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20823218 G
1 G
20823219 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20823542 original size:26 final size:26
Alignment explanation
Indices: 20823506--20823558 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20823496 GTTGGCTTAG
20823506 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20823532 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20823558 G
1 G
20823559 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20824589 original size:26 final size:26
Alignment explanation
Indices: 20824560--20824612 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20824550 GTTGGCTTAG
*
20824560 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
20824586 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20824612 G
1 G
20824613 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20825318 original size:26 final size:26
Alignment explanation
Indices: 20825282--20825334 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20825272 TTTGACTTAG
*
20825282 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20825308 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20825334 G
1 G
20825335 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20825681 original size:154 final size:153
Alignment explanation
Indices: 20825448--20825732 Score: 378
Period size: 154 Copynumber: 1.9 Consensus size: 153
20825438 CGCATGCCTG
* * *
20825448 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAAACCGAGGGTT
1 TTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGCCAAACCGAGGGTT
* * *
20825513 GTGGCAGCGAGATCGACAGCACGTAGAGGGGATCGAGTCGATCCCCGGCTTGCACATTATGCCTC
66 GCGACAGCGAGATCGAC-GCACGCAGAGGGGATCGAGTCGATCCCCGGCTTGCACATTATGCCTC
20825578 TCCGGTTCAGTGCTTGTACGCTCA
130 TCCGGTTCAGTGCTTGTACGCTCA
* * * * *
20825602 TTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCGCA-GTCTAAG-ATCAGACCGAACTGAGGG
1 TTTCATGGGTTGACTTAGGCATAGGGAGTTCATTC-CATGTCTAAGCACCAG-CCAAACCGAGGG
* * * *
20825665 TTGCGATAGC-AGGATCGACGCACGCAGGGGGGATCGTGTCGATCCCCGGCTTGCACATTCTGCC
64 TTGCGACAGCGA-GATCGACGCACGCAGAGGGGATCGAGTCGATCCCCGGCTTGCACATTATGCC
20825729 TCTC
128 TCTC
20825733 TGACCGGCTG
Statistics
Matches: 113, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
153 49 0.43
154 62 0.55
155 2 0.02
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (153 bp):
TTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGCCAAACCGAGGGTT
GCGACAGCGAGATCGACGCACGCAGAGGGGATCGAGTCGATCCCCGGCTTGCACATTATGCCTCT
CCGGTTCAGTGCTTGTACGCTCA
Found at i:20825821 original size:157 final size:154
Alignment explanation
Indices: 20825308--20825835 Score: 455
Period size: 157 Copynumber: 3.4 Consensus size: 154
20825298 CCCAGTCTAA
* * * **
20825308 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGGTCGAGGGTTGCGACAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATC-G-A
* * * ** * *
20825373 -GCACGCAGGAGGGGCT-GGGTCGATCCTCGGCTTGCGTATTCTGCCTCTCCGGCCGGCTGAGCA
64 CGCACGCAGG-GGGGATCGAGTCGATCCCCGGCTTGCACATTCTGCCTCT-CTGCCGGCTGAG-T
* *
20825436 CCCGCATGCCT-GTTTCATGGGTTGGCTTAG
126 GCCGCA--CCTCATTTCATGGGTTGGCTTAG
* * ** * * * *
20825466 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCAAACCGAGGGTTGTGGCAGC-GAGATCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCAGACCGAGGGTTGCGACAGCAG-GATCG
* * * * *
20825528 ACAGCACGTAGAGGGGATCGAGTCGATCCCCGGCTTGCACATTATG-C-CTCT-CCGGTTCAGTG
63 AC-GCACGCAGGGGGGATCGAGTCGATCCCCGGCTTGCACATTCTGCCTCTCTGCCGGCTGAGTG
* * * *
20825590 CTTGTACGCTCATTTCGTGGGTTGACTTAG
127 C-CGCAC-CTCATTTCATGGGTTGGCTTAG
* * * * *
20825620 GCATATGGAGTTCATTCGCAGTCTAAGATCAGACC-GAACTGAGGGTTGCGATAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGACAGCAGGATCGAC
* *
20825684 GCACGCAGGGGGGATCGTGTCGATCCCCGGCTTGCACATTCTGCCTCTCTGACCGGCTGAATGGC
65 GCACGCAGGGGGGATCGAGTCGATCCCCGGCTTGCACATTCTGCCTCTCTG-CCGGCTGAGT-GC
* *
20825749 CACACACTCATTTCATGGGCTGGCTTAG
128 CGCAC-CTCATTTCATGGGTTGGCTTAG
* *
20825777 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGACAACAGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGA
20825836 CCAGCAGTAG
Statistics
Matches: 290, Mismatches: 61, Indels: 39
0.74 0.16 0.10
Matches are distributed among these distances:
152 1 0.00
153 42 0.14
154 70 0.24
155 10 0.03
156 3 0.01
157 91 0.31
158 73 0.25
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGACG
CACGCAGGGGGGATCGAGTCGATCCCCGGCTTGCACATTCTGCCTCTCTGCCGGCTGAGTGCCGC
ACCTCATTTCATGGGTTGGCTTAG
Found at i:20826876 original size:26 final size:26
Alignment explanation
Indices: 20826840--20826892 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20826830 GTTGACTTAG
20826840 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
20826866 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20826892 G
1 G
20826893 ATCAAGCTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20827233 original size:26 final size:26
Alignment explanation
Indices: 20827182--20827234 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20827172 GTTGGCTTAG
* *
20827182 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
20827208 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
20827234 G
1 G
20827235 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:20827913 original size:26 final size:26
Alignment explanation
Indices: 20827877--20827929 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20827867 GTTGACTTAG
20827877 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20827903 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20827929 G
1 G
20827930 ATCAGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20828162 original size:26 final size:26
Alignment explanation
Indices: 20828126--20828178 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20828116 GTTGACTTAG
*
20828126 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20828152 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20828178 G
1 G
20828179 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20829196 original size:26 final size:26
Alignment explanation
Indices: 20829160--20829212 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20829150 GTTGACTTAG
20829160 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
* *
20829186 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
20829212 G
1 G
20829213 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:20829667 original size:158 final size:157
Alignment explanation
Indices: 20829185--20829677 Score: 417
Period size: 158 Copynumber: 3.1 Consensus size: 157
20829175 CCCTAGTCTA
* * * * * * * * *
20829185 AGCATATGAAGTTCATTCCTAGTCTAAGATCAGACTGGATCGAGGGTTGCGACAGTAGGATCTAC
1 AGCATACGGAGTTCATTCCCAGTTTAGGATCAGACAGGATCGAGGGTTGCGGCAGCAGGATCGAC
* * * *
20829250 AGCACGCA-GGGGGGATCGGGCCGATCCTCGGCTTGTGCATTTTGCCTTTCACGCCGGCTGAGCG
66 AGCACGCAGGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTTTC-CGACGGCTGAGCG
* *
20829314 CCCGC-CTCTCGTTTCGTGTGTTGGCTT
130 CCCGCACGCTCGTTTCGTGGGTTGGCTT
* * *** * * * *
20829341 AGGCATTA-GGGGTTCATT-CCATGTCTAAGCCCCAGCCA-GA-CTGAGGGTTGTGGTAGCAAGA
1 A-GCA-TACGGAGTTCATTCCCA-GT-TTAGGATCAGACAGGATC-GAGGGTTGCGGCAGCAGGA
* * ** * * *
20829402 GCGACAGCACACAGAAGGGGATCGGGTCGATCCCCGGCTCGCGCATTATGTCTTTCCGATCGGCT
61 TCGACAGCACGCAGGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTTTCCGA-CGGCT
* * * * * * * *
20829467 CAACGCTCACACGCTC-CTTGGTTAGGTTGACTT
125 GAGCGCCCGCACGCTCGTTTCG-TGGGTTGGCTT
20829500 AGCCATACGGAGTTCATTCCCAGTTTAGGATCAGACAGGATCGAGGGTTGCGGCAGCAGGATCGA
1 AG-CATACGGAGTTCATTCCCAGTTTAGGATCAGACAGGATCGAGGGTTGCGGCAGCAGGATCGA
* * * * * *
20829565 TAGCACGTAGGGGGGGATCGGGCCGA-CCCCGGCTTGCACATTCTGCCTCTCCGACAGGTTGAGC
65 CAGCACGCAGGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTTTCCGAC-GGCTGAGC
*
20829629 GCCCGCACGCTCGTTTTGTGGGTTGGCTT
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTT
20829658 ACGCATACGGAGTTCATTCC
1 A-GCATACGGAGTTCATTCC
20829678 ATGTCTAAGC
Statistics
Matches: 252, Mismatches: 68, Indels: 32
0.72 0.19 0.09
Matches are distributed among these distances:
156 4 0.02
157 42 0.17
158 131 0.52
159 71 0.28
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
AGCATACGGAGTTCATTCCCAGTTTAGGATCAGACAGGATCGAGGGTTGCGGCAGCAGGATCGAC
AGCACGCAGGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTTTCCGACGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTT
Found at i:20830071 original size:171 final size:168
Alignment explanation
Indices: 20829693--20830083 Score: 381
Period size: 171 Copynumber: 2.3 Consensus size: 168
20829683 TAAGCATATG
* ** * * * *
20829693 AGTTCATTCCAGTCTAAGATTGGATTGGACTGAGCGTTGTGACAGTAGGACCAACAGTAGTATCG
1 AGTTCATTCCAGTCTAAGATCGGATCAGA-TGAGGGTTGTGACAGCAGGACCAACAGCAGGATCG
* * * * * *
20829758 ACAGCACGCAGGGGGGATCGGGTCGATCCCTCGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGC
65 ACAGCACACAGGGGGGATCAGGTCGATCCCTCGCTTGCGCATTATGCCTCTCCGACCGGCTCAGC
* * ** *
20829823 GCCCGCACGTTCATTTTGTGGGTTGGCTTAGGCATACGA
130 GCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGA
* * ** * * * * * *
20829862 AGTTCATACCATGTCTAAG-CCCCAGCCAGACCGAGGGTTGTGGCTGCAGGACCGACAGCGGGAT
1 AGTTCATTCCA-GTCTAAGATCGGA-TCAGA-TGAGGGTTGTGACAGCAGGACCAACAGCAGGAT
* * * *
20829926 CGACAGCACATAGAGGGGGATCAGGTCGATCCC-CGGCTTGTGCATTATGCCTCTTCGGCCGGCT
63 CGACAGCACACAG-GGGGGATCAGGTCGATCCCTC-GCTTGCGCATTATGCCTCTCCGACCGGCT
*
20829990 CAGCGCCCGAACGCTCATTTCATGGGTTGACTTATGCATACGA
126 CAGCGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGA
* *
20830033 AGTTCATTCCTAGTCTAAGATCGGATCAGATAGAGGGTTGCGAAAGCAGGA
1 AGTTCATTCC-AGTCTAAGATCGGATCAGAT-GAGGGTTGTGACAGCAGGA
20830084 TTGACAGCAC
Statistics
Matches: 172, Mismatches: 43, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
169 11 0.06
170 46 0.27
171 112 0.65
172 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.24
Consensus pattern (168 bp):
AGTTCATTCCAGTCTAAGATCGGATCAGATGAGGGTTGTGACAGCAGGACCAACAGCAGGATCGA
CAGCACACAGGGGGGATCAGGTCGATCCCTCGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCG
CCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGA
Found at i:20830233 original size:26 final size:26
Alignment explanation
Indices: 20830183--20830235 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20830173 GTTGGCTTAG
*
20830183 GCATACGGAGTTCAATCCATGTCTAA
1 GCATACGGAGTTCAATCCATATCTAA
*
20830209 GCATACGGAGTTCATTCC-TAATCTAA
1 GCATACGGAGTTCAATCCAT-ATCTAA
20830235 G
1 G
20830236 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCATATCTAA
Found at i:20831128 original size:26 final size:26
Alignment explanation
Indices: 20831088--20831140 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20831078 GTTGGCTTAG
*
20831088 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
*
20831114 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
20831140 G
1 G
20831141 ATCTGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:20831823 original size:26 final size:26
Alignment explanation
Indices: 20831793--20831843 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20831783 TGGCTTAGGG
20831793 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
20831819 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
20831844 ATTGGATTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:20832207 original size:26 final size:26
Alignment explanation
Indices: 20832171--20832223 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20832161 GTTGACTTAG
20832171 GCATACGGAGTTCA-ACCACAGTCTAA
1 GCATACGGAGTTCATACC-CAGTCTAA
* *
20832197 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
20832223 G
1 G
20832224 ATCGGATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:20832698 original size:159 final size:159
Alignment explanation
Indices: 20832324--20832701 Score: 395
Period size: 159 Copynumber: 2.4 Consensus size: 159
20832314 TCGGCCGAGT
* * * *
20832324 GCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGC
* ** * * * * *
20832389 TGGACCGAGGGTTATGGCAGTGGCATCGGCAGCATGTATAGGGGGATCAGGCCGATCCTCGGCTT
66 CGGACCGAGGGTTATGGCAGAAGCATCGACAGCACGCATAGGGGGATCAGGCCGATCCGCGACTT
* * * *
20832454 GTGCATTATGCCTCTTCGATCGGCTCAGC
131 GCGCATTATGCATCTCCAATCGGCTCAGC
* * * * * * *
20832483 GCCCGCACGTTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-ATCTAAG-ATCAG
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG
* * * * **
20832546 ACCGGACTGAGGGTTATGGTAGCAAG-ATCGACAGCACGCATGGGGGGCTTGGGCCGATCCGCGA
65 -CCGGACCGAGGGTTATGGCAG-AAGCATCGACAGCACGCATAGGGGGATCAGGCCGATCCGCGA
* * *
20832610 TTTGCGCATTCTGCATCTCCAA-CTGGCTGAGC
128 CTTGCGCATTATGCATCTCCAATC-GGCTCAGC
*
20832642 GCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
20832702 TACAGAGTTC
Statistics
Matches: 174, Mismatches: 39, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
158 7 0.04
159 162 0.93
160 5 0.03
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.26
Consensus pattern (159 bp):
GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGC
CGGACCGAGGGTTATGGCAGAAGCATCGACAGCACGCATAGGGGGATCAGGCCGATCCGCGACTT
GCGCATTATGCATCTCCAATCGGCTCAGC
Found at i:20832722 original size:26 final size:26
Alignment explanation
Indices: 20832673--20832725 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20832663 GTTGGCTTAG
* *
20832673 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATCCCATGTCTAA
20832699 GCATACAGAGTTCATACCCA-GTCTAA
1 GCATACAGAGTTCAT-CCCATGTCTAA
20832725 G
1 G
20832726 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCATGTCTAA
Found at i:20833920 original size:158 final size:158
Alignment explanation
Indices: 20833454--20833924 Score: 423
Period size: 158 Copynumber: 3.0 Consensus size: 158
20833444 CTAAGATAAG
* * * * * * * *
20833454 ACCGGACCAAGGGTTGCGGTAGTAAGATCAACAGCATGCA-GGGGGGATCGGGTCGATCCCTGGC
1 ACCGGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCAGGGGGGGATCGGGCCGATCCCCGGC
* * * * * *
20833518 TTGCTCATTCTGCCTCTCCGGCCAGTTGAGCACCTGCACGCCCGTTTAGTGGGTTGGCTTACGCA
66 TTGCACATTCTGCCTCTCCGGCGA-CTGAGCACCCGCACGCTCGTTTAGTGGGTTGGCTTAGGCA
* *
20833583 TAGGGAGTTCATTCCATGTCTAAGCCCCA
130 TACGGAGTTCATTCCATGTCTAAGCACCA
* * ** * * * * *
20833612 ACCGAACCGAAGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGACCGGGCTGAT-CCCGGC
1 ACCGGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCAGGGGGGGATCGGGCCGATCCCCGGC
* * * * * * * * *
20833676 TTGCACATTATGCCTCTTCGACCGGCTCAGCACCCGTATGCTCGTTTTGTGGGTTGACTTATGG-
66 TTGCACATTCTGCCTCTCCG-GCGACTGAGCACCCGCACGCTCGTTTAGTGGGTTGGCTTA-GGC
* *
20833740 ATACGGAGTTCATTCCCA-GTCTAAG-ATCG
129 ATACGGAGTTCATT-CCATGTCTAAGCACCA
* * * *
20833769 GCCTGGACCGAGGGTTGTGGCAGCAAGATTGACAGCACGCAGGGGGGGATTGGGCCGATCCCCGA
1 ACC-GGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCAGGGGGGGATCGGGCCGATCCCCGG
* * * * *
20833834 CTTGCGCATTCTACCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGC
65 CTTGCACATTCTGCCTCTCCGG-CGACTGAGCACCCGCACGCTCGTTTAGTGGGTTGGCTTAGGC
* *
20833899 ATACAGAGCTCATT-CATGTCTAAGCA
129 ATACGGAGTTCATTCCATGTCTAAGCA
20833925 TACGGAGTTC
Statistics
Matches: 239, Mismatches: 64, Indels: 19
0.74 0.20 0.06
Matches are distributed among these distances:
157 5 0.02
158 151 0.63
159 83 0.35
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
ACCGGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCAGGGGGGGATCGGGCCGATCCCCGGC
TTGCACATTCTGCCTCTCCGGCGACTGAGCACCCGCACGCTCGTTTAGTGGGTTGGCTTAGGCAT
ACGGAGTTCATTCCATGTCTAAGCACCA
Found at i:20833949 original size:26 final size:26
Alignment explanation
Indices: 20833897--20833974 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 26
20833887 GTTGGCTTAG
* *
20833897 GCATACAGAGCTCATT-CATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
20833922 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
* *
20833948 GCGTACGGATTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
20833974 G
1 G
20833975 ATTTTGAGCC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
25 14 0.30
26 30 0.64
27 3 0.06
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:20834675 original size:26 final size:26
Alignment explanation
Indices: 20834645--20834697 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20834635 GTTGACTTAG
20834645 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
20834671 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20834697 G
1 G
20834698 ATCAGAATGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20834828 original size:26 final size:26
Alignment explanation
Indices: 20834799--20834851 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20834789 GTTGGCTTCG
*
20834799 GCATATGGTGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
20834825 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
20834851 G
1 G
20834852 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:20835059 original size:171 final size:171
Alignment explanation
Indices: 20834877--20835194 Score: 399
Period size: 171 Copynumber: 1.9 Consensus size: 171
20834867 GGGTTGCTGC
* * * *
20834877 AGCAGGACCAGCAGCAGGATCGGCAGCACGCA-AGGAGGGATCGAGCTGATCCTC-GATTTACGC
1 AGCAAGACCAGCAGCAGGATCGGCAGCACGCAGAGG-GGGACCGAGCTGATCCCCAG-CTTACGC
* * *
20834940 ATTCTACCTCTCCAATCGACTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
64 ATTATACCTCTCCAATCGACTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGA
*
20835005 GTTCAT-TCCATGTCTAAGCCCCAACCAGACCCAGGGTTGTGGT
129 GTTCATCCCCA-GTCTAAGCCCCAACCAGACCCAGGGTTGTGGT
* * * * *
20835048 AGCAAGACCAGCAGCAGGATCTGCAGCATGTAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCAT
1 AGCAAGACCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCGAGCTGATCCCCAGCTTACGCAT
* * ** ** * *
20835113 TATGCCTCTTCGGTCGGTTGAGCTCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGT
66 TATACCTCTCCAATCGACTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGT
20835178 TCATCCCCAGTCTAAGC
131 TCATCCCCAGTCTAAGC
20835195 ATACGGAGTT
Statistics
Matches: 123, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
171 116 0.94
172 7 0.06
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.22
Consensus pattern (171 bp):
AGCAAGACCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCGAGCTGATCCCCAGCTTACGCAT
TATACCTCTCCAATCGACTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGT
TCATCCCCAGTCTAAGCCCCAACCAGACCCAGGGTTGTGGT
Found at i:20835450 original size:355 final size:359
Alignment explanation
Indices: 20834888--20835760 Score: 998
Period size: 355 Copynumber: 2.4 Consensus size: 359
20834878 GCAGGACCAG
* * * * * *
20834888 CAGCAGGATCGGCAGCACGCAAGGAGGGATCGAGCTGATCCTCGATTTACGCATTCTACCTCTCC
1 CAGCAGGATCGACAGCACGCAA-GAGGGACCGGGCTGAT-CTCG-GTTGCGCATTCTGCCTCTCC
* * * * * *
20834953 AATCGACTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
63 GATCGACTGAGTGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
** * * * ***
20835018 CTAAGCCCCAACCAGACCCAGGGTTGTGGTAGCAAGACCAGCAGCAGGATCTGCAGCATGTAGAG
128 CTAAGCCCCAGTCGGACCGAGGGTTATGGTAGCAAGACCAGCAGCAGGATCTGCAGCACACAGAG
* * *
20835083 GGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTTCG-GTCGG-T-T-GA-GC-T-CCCG
193 GGGGACCGGGCTGATACCCAGCTTGCGCATTATGCCTCTCCGAAT-GGCTCTCGACGCGTGCCCG
20835141 CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
257 CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* *
20835206 ATTCCCAGTCCAAGATCAGA-CTGGACCGATGGTTGCGA
322 ATTCCCAGTCCAAGATCAGATC-AGACCGAGGGTTGCGA
* * * *
20835244 TAGTAGGATCGACAGCACGTAAGAGGGACCGGGCTGATCTTCGGCTTGCACATTCTGCCTCTCCG
1 CAGCAGGATCGACAGCACGCAAGAGGGACCGGGCTGATC-TCGG-TTGCGCATTCTGCCTCTCCG
* *
20835309 ATCGACTGGGTGCCCACACGCTCATTTCGTGGGTTGGATTAGGCATACGGAGTTCATTCCATGTC
64 ATCGACTGAGTGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* * *
20835374 TAAGCCCCAGTCGGACCGAGGGTTATGGTAGCAGGACTAGCAGCGGGATC-GACAGCACACAGAG
129 TAAGCCCCAGTCGGACCGAGGGTTATGGTAGCAAGACCAGCAGCAGGATCTG-CAGCACACAGAG
* *
20835438 GGGGGCCGGGCTGATACCCAGCTTGCTCATTATGCCTCTCCGAATGGCCTCTCCGATCGGCTGAG
193 GGGGACCGGGCTGATACCCAGCTTGCGCATTATGCCTCTCCGAATGG-CTCT-CGA-C-GC---G
*** * * *
20835503 TGTTTGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATG
251 TGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACG
*
20835568 GAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGA
316 GAGTTCATTCCCAGTCCAAGATCAGATCAGACCGAGGGTTGCGA
* * * * *
20835612 CAGCAGGATC-AGCAGCACGCAGGGGGGACCAGGCTGATCCCTAGTTGCGCATTCTGCCTCTCCG
1 CAGCAGGATCGA-CAGCACGCAAGAGGGACCGGGCTGATCTC-GGTTGCGCATTCTGCCTCTCCG
* * * * *
20835676 A-CTGGCTGAGTGCTCGTACA-TC-CATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTACAT
64 ATC-GACTGAGTGC-C-CACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
20835738 GTCTAAGCCCCAGTCGGACCGAG
126 GTCTAAGCCCCAGTCGGACCGAG
20835761 AGTTGTTACA
Statistics
Matches: 435, Mismatches: 59, Indels: 35
0.82 0.11 0.07
Matches are distributed among these distances:
354 2 0.00
355 182 0.42
356 19 0.04
357 1 0.00
358 1 0.00
360 2 0.00
363 2 0.00
366 1 0.00
367 91 0.21
368 130 0.30
369 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (359 bp):
CAGCAGGATCGACAGCACGCAAGAGGGACCGGGCTGATCTCGGTTGCGCATTCTGCCTCTCCGAT
CGACTGAGTGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
AGCCCCAGTCGGACCGAGGGTTATGGTAGCAAGACCAGCAGCAGGATCTGCAGCACACAGAGGGG
GACCGGGCTGATACCCAGCTTGCGCATTATGCCTCTCCGAATGGCTCTCGACGCGTGCCCGCACG
CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
CCAGTCCAAGATCAGATCAGACCGAGGGTTGCGA
Found at i:20835565 original size:26 final size:26
Alignment explanation
Indices: 20835535--20835587 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20835525 GTTGACTTAG
20835535 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20835561 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20835587 G
1 G
20835588 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20836059 original size:26 final size:26
Alignment explanation
Indices: 20836023--20836075 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20836013 GTTAGCTTAG
20836023 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20836049 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20836075 G
1 G
20836076 ATTGTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20836283 original size:13 final size:12
Alignment explanation
Indices: 20836248--20836279 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
20836238 GTGCTGGTAC
*
20836248 TTGGCCCTTATA
1 TTGGCCCCTATA
20836260 TTGGCCCCTATA
1 TTGGCCCCTATA
20836272 TTGGCCCC
1 TTGGCCCC
20836280 CTATCCCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.34, G:0.19, T:0.34
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:20837255 original size:26 final size:26
Alignment explanation
Indices: 20837221--20837299 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
20837211 ATTGCCTTAG
20837221 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
20837247 GCATGCGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
20837273 GCATACGGAGTTCATTCC-TAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
20837299 G
1 G
20837300 ATTTTGAGCC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
25 1 0.02
26 49 0.98
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:20837989 original size:26 final size:26
Alignment explanation
Indices: 20837960--20838012 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20837950 ATTAGATTAG
20837960 GCATAGGGAGTTCATCCCTAGTCTAA
1 GCATAGGGAGTTCATCCCTAGTCTAA
* * *
20837986 GCATATGGAGTTTATTCCTAGTCTAA
1 GCATAGGGAGTTCATCCCTAGTCTAA
20838012 G
1 G
20838013 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATAGGGAGTTCATCCCTAGTCTAA
Found at i:20838511 original size:26 final size:26
Alignment explanation
Indices: 20838461--20838513 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20838451 GTTAGCTTAT
* *
20838461 GCATATGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
20838487 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
20838513 G
1 G
20838514 ATCAGACTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:20838857 original size:26 final size:26
Alignment explanation
Indices: 20838828--20838880 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20838818 GTTGACTTAG
20838828 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
20838854 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20838880 G
1 G
20838881 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20839081 original size:355 final size:350
Alignment explanation
Indices: 20838404--20839558 Score: 1082
Period size: 368 Copynumber: 3.2 Consensus size: 350
20838394 CCAGCTTACG
* * * * * * *
20838404 CATTCTGCCTCTCCGACCGGTTGAGTGCCTGCACGCTCGTTTCGTGGGTT-AGCTTATGCATATG
1 CATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACG
* * * * *
20838468 GAGTTCAT-TCCATTTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACTGAGGG
65 AAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGAAC-GAGGG
* * * *
20838532 TTGCGGTAGCAAGACCAGCAACAGGATCGATAGCACACAGGAGGGATCGGGTCGATCCTTGGCTT
128 TTGCGGCAGCAGGATC-G--ACA-G-T--AT-G--CA-AGG-GGGATCGGGTCGATCCTCGGCTT
* * * * *
20838597 ACGCGTTCTGCCTCTCCGGCCGACTGAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATA
181 ACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* * *
20838662 CGGAGTTTATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGTAGCAGGATC-AGCAGTGG
246 GGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAG-AGGA-CGA-CAGTGG
* **
20838726 GATCGGCAGCACGCAGAGGGCGATCGGGCTGATCCTCGACTTGTG
308 GATCGG-AGCACGCAGAGGG-GATCGAGCTGATCCTCGACTTGCA
*
20838771 CATTATGCCTCTCCGATCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
1 CATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
* * *
20838836 AGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGAGCGAGGGTT
66 AGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGAACGAGGGTT
* *
20838901 GCGGCAGCAGGATCGACAGTATGCAAGGGGGATCGGGTTGGTCCTCGGCTTACGCATTCTGCCTC
130 GCGGCAGCAGGATCGACAGTATGCAAGGGGGATCGGGTCGATCCTCGGCTTACGCATTCTGCCTC
* ** *
20838966 TCTGACCGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
195 TCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
* * * *
20839031 TGTCTAAGCCCCAACCGGACCAAGGGTTGTGGTAGTAGGACCGACAGTGGGATCGGTAGCACGTA
260 TGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAG-AGGA-CGACAGTGGGATCGG-AGCACGCA
*
20839096 GAAGGGGACCGAGCTGATCC-CTGACTTGCA
322 G-AGGGGATCGAGCTGATCCTC-GACTTGCA
* * *
20839126 CATTACGCCTCTCCGACCAGCCTTTTCGGTCGGTTGAGCGCCCGCATGCTTGTTTCGTGGGTTGA
1 CATTATGCCTCTCCG---A------TCGG-C---TGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* *
20839191 CTTGGGCATAC-AGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
53 CTTAGGCATACGA-AGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * * * *
20839255 TCAGATCAAGGGTTGCGACAGCAGGATCGACAGCA-CCTAGGGGGGACCGAGCCGATCC-CTGGC
117 -CAGAACGAGGGTTGCGGCAGCAGGATCGACAGTATGC-AAGGGGGATCGGGTCGATCCTC-GGC
* * ** * * *
20839318 TTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCATATGCTAGTTTCGTGGGTTGGCTTGGGCA
179 TTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
* * * * *
20839383 TAGGTAGTTCATTCCATGTCTAAACCCTAGCCAGATCGAGGGTTGTGGTAG-CGA-GAC--T-GG
244 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGAGGACGACAGTGGG
** *
20839443 -T---AGCACGCAGAGAGGGATCGAGCCAATCATCGACTTGCA
309 ATCGGAGCACGCAGAG-GGGATCGAGCTGATCCTCGACTTGCA
* * * * ** *
20839482 CATTATGCCTCTCCGGTCGGCTTAGCGCCCGAACACTCGTTTTATGGGTTGTCTTAGGCATACGA
1 CATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
* *
20839547 AGCTCATTCCCA
66 AGTTCATCCCCA
20839559 ATCGAAGATC
Statistics
Matches: 661, Mismatches: 102, Indels: 74
0.79 0.12 0.09
Matches are distributed among these distances:
343 43 0.07
344 1 0.00
346 1 0.00
347 4 0.01
354 1 0.00
355 178 0.27
356 50 0.08
357 3 0.00
358 1 0.00
359 1 0.00
360 3 0.00
361 2 0.00
362 2 0.00
363 1 0.00
364 10 0.02
365 1 0.00
366 3 0.00
367 117 0.18
368 239 0.36
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (350 bp):
CATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
AGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGAACGAGGGTTG
CGGCAGCAGGATCGACAGTATGCAAGGGGGATCGGGTCGATCCTCGGCTTACGCATTCTGCCTCT
CCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
GTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGAGGACGACAGTGGGATCGGAGCACGCAGAGG
GGATCGAGCTGATCCTCGACTTGCA
Found at i:20839225 original size:26 final size:26
Alignment explanation
Indices: 20839196--20839248 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20839186 GTTGACTTGG
20839196 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20839222 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20839248 G
1 G
20839249 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20839662 original size:153 final size:153
Alignment explanation
Indices: 20839444--20839723 Score: 339
Period size: 153 Copynumber: 1.8 Consensus size: 153
20839434 CGAGACTGGT
* ** * *
20839444 AGCACGCAGAGAGGGATCGAGCCAATCATCGACTTGCACATTATGCCTCTCCGGTCGGCTTAGCG
1 AGCACGCAGAGAGGGATCGAGCCAATCACCGACTTGCACATTATGCCTCTCCGACCGACTGAGCG
** *
20839509 CCCGAACACTCGTTTTATGGGTTGTCTTAGGCATAC-GAAGCTCATTCCCAATCGAAGATCGAAC
66 CCCGAACACTCGTTCCATGGGTTGGCTTAGGCATACAG-AGCTCATT-CCAATCGAAGATCGAAC
20839573 TGAGGATTGTGGCAGTACGATCGAC
129 TGAGGATTGTGGCAGTACGATCGAC
* * * * * *
20839598 AGCACGCAG-GGGGGATCGGGCCGATCCCCGACTTGCTCATTCTGCCTCTCCGACCGACTGAGCG
1 AGCACGCAGAGAGGGATCGAGCCAATCACCGACTTGCACATTATGCCTCTCCGACCGACTGAGCG
* ** * * * *
20839662 CCCGCAGGCTCGTTCCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAGTCTAAGATCGAA
66 CCCGAACACTCGTTCCATGGGTTGGCTTAGGCATACAGAGCTCATTCCAATCGAAGATCGAA
20839724 TCGGATCGAG
Statistics
Matches: 104, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
152 14 0.13
153 80 0.77
154 10 0.10
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (153 bp):
AGCACGCAGAGAGGGATCGAGCCAATCACCGACTTGCACATTATGCCTCTCCGACCGACTGAGCG
CCCGAACACTCGTTCCATGGGTTGGCTTAGGCATACAGAGCTCATTCCAATCGAAGATCGAACTG
AGGATTGTGGCAGTACGATCGAC
Found at i:20839756 original size:12 final size:12
Alignment explanation
Indices: 20839739--20839768 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
20839729 TCGAGGGTTG
20839739 CAGCAGTAGGAC
1 CAGCAGTAGGAC
20839751 CAGCAGTAGGAC
1 CAGCAGTAGGAC
20839763 CAGCAG
1 CAGCAG
20839769 CATGTAGGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.33, C:0.27, G:0.33, T:0.07
Consensus pattern (12 bp):
CAGCAGTAGGAC
Found at i:20840610 original size:26 final size:26
Alignment explanation
Indices: 20840574--20840625 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20840564 GTTGGCTTAG
*
20840574 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20840600 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20840626 AATCAAACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20841671 original size:26 final size:26
Alignment explanation
Indices: 20841641--20841693 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20841631 GTTGACTTAG
20841641 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
20841667 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20841693 G
1 G
20841694 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20842394 original size:26 final size:26
Alignment explanation
Indices: 20842364--20842416 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20842354 GTTGACTTAG
* *
20842364 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
20842390 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
20842416 G
1 G
20842417 ACCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:20843206 original size:26 final size:26
Alignment explanation
Indices: 20843176--20843228 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20843166 GTTGGCTTAG
20843176 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
20843202 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20843228 G
1 G
20843229 ATTAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20843557 original size:159 final size:159
Alignment explanation
Indices: 20843268--20843563 Score: 407
Period size: 159 Copynumber: 1.9 Consensus size: 159
20843258 GGACCAGTAG
* *
20843268 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCACAGTCGGACCGAGGGTTATG
1 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCACAGTCGGACCGAAGGTTATG
* * * * ** * * *
20843333 GCAATGGGATCGACAGTATGCAGAGGGGGATCGGGTCGATCCTCAGCTTGTGTATTCTGCCTCTC
66 ACAACGGGACCGACAGCACACAGAGGGGGATCGGGTCGATCCCCAGCTTGTGCATTATGCCTCTC
*
20843398 CGGCCGGTTGAGCGCCCACGTGCCCATTT
131 CGACCGGTTGAGCGCCCACGTGCCCATTT
* * *
20843427 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCCCAG-CTGGACTGAAGGTTGT
1 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCACAGTC-GGACCGAAGGTTAT
* *
20843491 GACAGCGGGACCGACAGCACACAGAGGGGGATCGGG-CAGATCCCCGGCTTGTGCATTATGCCTC
65 GACAACGGGACCGACAGCACACAGAGGGGGATCGGGTC-GATCCCCAGCTTGTGCATTATGCCTC
20843555 TCCGACCGG
129 TCCGACCGG
20843564 CTCAGGCATA
Statistics
Matches: 118, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
158 2 0.02
159 116 0.98
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.23
Consensus pattern (159 bp):
CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCACAGTCGGACCGAAGGTTATG
ACAACGGGACCGACAGCACACAGAGGGGGATCGGGTCGATCCCCAGCTTGTGCATTATGCCTCTC
CGACCGGTTGAGCGCCCACGTGCCCATTT
Found at i:20843757 original size:26 final size:26
Alignment explanation
Indices: 20843727--20843779 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20843717 GTTGGCTTAG
*
20843727 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAATTCATTCCCA-GTCTAA
*
20843753 GCATATAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
20843779 G
1 G
20843780 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:20844122 original size:26 final size:26
Alignment explanation
Indices: 20844093--20844145 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20844083 GTTGACTTAG
20844093 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20844119 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20844145 G
1 G
20844146 ATTAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20844470 original size:26 final size:26
Alignment explanation
Indices: 20844434--20844483 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
20844424 GGCTTAGGCA
20844434 TACAGAGTTCATT-CCATGTCTAAGCT
1 TACAGAGTTCATTCCCA-GTCTAAGCT
20844460 TACAGAGTTCATTCCCAGTCTAAG
1 TACAGAGTTCATTCCCAGTCTAAG
20844484 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (26 bp):
TACAGAGTTCATTCCCAGTCTAAGCT
Found at i:20845343 original size:160 final size:159
Alignment explanation
Indices: 20844854--20845677 Score: 685
Period size: 159 Copynumber: 5.2 Consensus size: 159
20844844 CCTAATCTAA
* * * * * *
20844854 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTACGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * ** * * * *
20844919 GCACGTAG-GGGGGACTGGGCCGATCCTTGGCTTACGCATTCTGCCGCTCC-AGTCAGCTGAGTG
66 GCACGCAGAGGGGGACCGAGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGA-TCGGCTAAGCG
*
20844982 CCCGCACG-TCTGTTTCATGGGTTGGCTTAG
130 CCCGCACGCTC-GTTTCATGGGTTAGCTTAG
* ** *
20845012 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CC-GAACCGAGGGTTGTGGCAGC-GAGA-C
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAG-ACCGAGGGTTGCGGCAGCAG-GATC
* * * * * * *
20845072 CAGCAGCACACAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATTCCTCTCTGATCGGCTA
62 GA-CAGCACGCAGAGGGGGACCGAGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTA
* *
20845137 AGCGCTCGCA-GACTCGTTT-AGTGGGTTAACTTAG
126 AGCGCCCGCACG-CTCGTTTCA-TGGGTTAGCTTAG
*
20845171 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * * *
20845236 GCACGCAGGGAGGGGATCGGGTCGGTCCCCGACTTGTGCATTCTGCCTTTCCG-GCTGGCTAAGC
66 GCACGCAGAG-GGGGACCGAGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATC-GGCTAAGC
20845300 GCCCGCACGCTCGTTTCATGGGTTAGCTTAG
129 GCCCGCACGCTCGTTTCATGGGTTAGCTTAG
* * ** * * * * *
20845331 GCACAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGA-CTA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC-G
* * * *
20845393 ACAGCACACAGAGGGGGACCGAGCAGATCCCTGGCTTGTGCATTATGCCTCTCCGATCGGCTTAG
63 ACAGCACGCAGAGGGGGACCGAGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTAAG
* * * *
20845458 CGCCCGTACCCTAGTTTCGTGGGTT-GACTTAG
128 CGCCCGCACGCTCGTTTCATGGGTTAG-CTTAG
* * * *
20845490 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGACAGCAGCATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * *
20845555 GCATG--TAGGGGGACCGAGTCGATCCCTGGCTTGTGCATTCTGCCTCTCTGACCTGTTGAGCGC
66 GCACGCAGAGGGGGACCGAGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTAAGCGC
* * *
20845618 CCGCACGCACACTCATTTCATGGGTTGGCTTAA
131 CCGCACG----CTCGTTTCATGGGTTAGCTTAG
*
20845651 GCATACGAAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
20845678 CATACGGAGT
Statistics
Matches: 527, Mismatches: 106, Indels: 63
0.76 0.15 0.09
Matches are distributed among these distances:
157 61 0.12
158 56 0.11
159 230 0.44
160 136 0.26
161 43 0.08
162 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGAGGGGGACCGAGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTAAGCGC
CCGCACGCTCGTTTCATGGGTTAGCTTAG
Found at i:20845438 original size:319 final size:315
Alignment explanation
Indices: 20844854--20845678 Score: 1042
Period size: 319 Copynumber: 2.6 Consensus size: 315
20844844 CCTAATCTAA
* * * * *
20844854 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTACGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
* * ** * * * *
20844919 GCACGTAGGGGGGACTGGGCCGATCCTTGGCTTACGCATTCTGCCGCTCCAGTCAGCTGAGTGCC
66 GCACGTAGGGGGGAC-GGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCC-GGCTGCTGAGCGCC
20844984 CGCACG-TCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
129 CGCACGCTC-GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* *
20845048 AACCGAGGGTTGTGGCAGCGAGACCAGCAGCACACAGAGGGGGACCGAGCCGATCCCCGGCTTGC
193 AACCGAGGGTTGTGGCAGCGAGACCAACAGCACACAGAGGGGGACCGAGCAGATCCCCGGCTTGC
* * * * *
20845113 GCATTATTCCTCTCTGATCGGCTAAGCGCTCGCAGACTCGTTTAGTGGGTTAACTTAG
258 GCATTATGCCTCTCCGATCGGCTAAGCGCCCGCACACTAGTTTAGTGGGTTAACTTAG
* *
20845171 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * * *
20845236 GCACGCAGGGAGGGGATCGGGTCGGTCCCCGACTTGTGCATTCTGCCTTTCCGGCTGGCTAAGCG
66 GCACGTA-GG-GGGGA-CGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGCT-GCTGAGCG
* * *
20845301 CCCGCACGCTCGTTTCATGGGTTAGCTTAGGCACAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
127 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * *
20845366 GGACCGAGGGTTGTGGCAGCGGGACTAACAGCACACAGAGGGGGACCGAGCAGATCCCTGGCTTG
192 GAACCGAGGGTTGTGGCAGCGAGACCAACAGCACACAGAGGGGGACCGAGCAGATCCCCGGCTTG
* * * * * *
20845431 TGCATTATGCCTCTCCGATCGGCTTAGCGCCCGTACCCTAGTTTCGTGGGTTGACTTAG
257 CGCATTATGCCTCTCCGATCGGCTAAGCGCCCGCACACTAGTTTAGTGGGTTAACTTAG
* * *
20845490 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGACAGCAGCATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * *
20845555 GCATGTA-GGGGGACCGAGTCGATCCCTGGCTTGTGCATTCTGCCTCTCTGACCTGTTGAGCGCC
66 GCACGTAGGGGGGA-CGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCG-GCTGCTGAGCGCC
* * * *
20845619 CGCACGCACACTCATTTCATGGGTTGGCTTAAGCATACGAAGTTCATTCCATGTCTAAGC
129 CGCACG----CTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
20845679 ATACGGAGTT
Statistics
Matches: 434, Mismatches: 64, Indels: 17
0.84 0.12 0.03
Matches are distributed among these distances:
316 49 0.11
317 67 0.15
318 4 0.01
319 267 0.62
320 47 0.11
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (315 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
GCACGTAGGGGGGACGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGCTGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAAC
CGAGGGTTGTGGCAGCGAGACCAACAGCACACAGAGGGGGACCGAGCAGATCCCCGGCTTGCGCA
TTATGCCTCTCCGATCGGCTAAGCGCCCGCACACTAGTTTAGTGGGTTAACTTAG
Found at i:20845678 original size:26 final size:26
Alignment explanation
Indices: 20845648--20845703 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
20845638 TGGGTTGGCT
20845648 TAAGCATACGAAGTTCATTCC-ATGTC
1 TAAGCATACGAAGTTCATTCCTA-GTC
*
20845674 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGAAGTTCATTCCTAGTC
20845700 TAAG
1 TAAG
20845704 ATCAGACCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCTAGTC
Found at i:20847154 original size:26 final size:26
Alignment explanation
Indices: 20847120--20847196 Score: 118
Period size: 26 Copynumber: 3.0 Consensus size: 26
20847110 TGACTTAGGC
* *
20847120 ATATGAAGTTCATCCCCAGTTTAAGT
1 ATATAAAGTTCATCCCCAGTCTAAGT
20847146 ATATAAAGTTCATCCCCAGTCTAAGT
1 ATATAAAGTTCATCCCCAGTCTAAGT
* *
20847172 ATATAAAGTTCATTCCCAATCTAAG
1 ATATAAAGTTCATCCCCAGTCTAAG
20847197 ATCAGACCGG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (26 bp):
ATATAAAGTTCATCCCCAGTCTAAGT
Found at i:20847722 original size:26 final size:26
Alignment explanation
Indices: 20847653--20847715 Score: 126
Period size: 26 Copynumber: 2.4 Consensus size: 26
20847643 TAGTCATATG
20847653 GAGTTCATTCCATGTCTAAGCATACA
1 GAGTTCATTCCATGTCTAAGCATACA
20847679 GAGTTCATTCCATGTCTAAGCATACA
1 GAGTTCATTCCATGTCTAAGCATACA
20847705 GAGTTCATTCC
1 GAGTTCATTCC
20847716 CAGTCTATGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.32
Consensus pattern (26 bp):
GAGTTCATTCCATGTCTAAGCATACA
Found at i:20848283 original size:26 final size:26
Alignment explanation
Indices: 20848246--20848295 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
20848236 GGCTTAGGCA
20848246 TACGGAGCTCATT-CCATGTCTAAGCT
1 TACGGAGCTCATTCCCA-GTCTAAGCT
*
20848272 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGCTCATTCCCAGTCTAAG
20848296 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGCTCATTCCCAGTCTAAGCT
Found at i:20854294 original size:26 final size:26
Alignment explanation
Indices: 20854265--20854317 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20854255 GTTGACTTAG
*
20854265 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
* *
20854291 GCATACGGTGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
20854317 G
1 G
20854318 ATCAGACTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:20855016 original size:26 final size:26
Alignment explanation
Indices: 20854987--20855039 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20854977 GTTGACTTAG
*
20854987 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
*
20855013 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
20855039 G
1 G
20855040 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAATCTAA
Found at i:20855329 original size:159 final size:158
Alignment explanation
Indices: 20855053--20855832 Score: 573
Period size: 159 Copynumber: 4.9 Consensus size: 158
20855043 GAACCAGACC
* * * * * * * *
20855053 GAGGGTTGTGACAGCAGGATCGGTA-A-CACGCAGGGGGGATCGGGTCGATCCTCAGCTTGCGCA
1 GAGGGTTGTGGCAGCGGGATC--TACAGCACGCAGAGGGGACCGGGTCGATCCCCGGTTTGTGCA
* * * *
20855116 TT-CTGCCTCTCCGGTCGGCTGAGCGCCCGTACGCCTGTTTCATGGGTTGGCTTAGGCATACAGA
64 TTAC-GCCTCTCCGGTCGGCTCAGCACCCGTACGCCTGTTTCATGGGTTGACTTAGGCATACGGA
* *
20855180 GTTCATTTCATGTCTAAGTCCCAGCTGAACT
128 GTTCATTTCATGTCTAAGTCCCAGCTGGACA
* * *
20855211 GAGGGTTGTGGTAGCGGGATCTACAGCACGCAAAGAGGGACCGGGTCGATCCCCGATTTGTGCAT
1 GAGGGTTGTGGCAGCGGGATCTACAGCACGCAGAG-GGGACCGGGTCGATCCCCGGTTTGTGCAT
* * * * * *
20855276 TACGCCTCTCCAGTCAGCTCAGCACCCGTACGCTTATTTCGTGGGTTGACTTAGGCATACTGAGT
65 TACGCCTCTCCGGTCGGCTCAGCACCCGTACGCCTGTTTCATGGGTTGACTTAGGCATACGGAGT
* *
20855341 TCATTCCCA-GTCTAAGAT--TAGACTGGACA
130 TCATT-TCATGTCTAAG-TCCCAG-CTGGACA
* ** * * * * * *
20855370 GAGGGTTGTGACAGTAGGATCGACAGTACAC-CGGAGGGGATCGGGTCGATCCCTGGCTTGCGCA
1 GAGGGTTGTGGCAGCGGGATCTACAG--CACGCAGAGGGGACCGGGTCGATCCCCGGTTTGTGCA
* * * ** * *
20855434 TT-CTGCCTTTCTGGTCGGCTGAGTGCCCGTTCGCCTGTTTCATGGGTTGGCTTAGGCATACGGA
64 TTAC-GCCTCTCCGGTCGGCTCAGCACCCGTACGCCTGTTTCATGGGTTGACTTAGGCATACGGA
* * *
20855498 GTTCATTTCATGTCTAAGCCCCAGTTGGACC
128 GTTCATTTCATGTCTAAGTCCCAGCTGGACA
* * *
20855529 GAGGGTTGTGGCAGCGGGATATACAGCACGTAGAGGGGGACCGGG-CTGATCCCCGGTTTGTACA
1 GAGGGTTGTGGCAGCGGGATCTACAGCACGCAGA-GGGGACCGGGTC-GATCCCCGGTTTGTGCA
* * * * * * *
20855593 TTATGCCTCTTCGATCGGCTCAGCACCCGCACG-ATCGTTTCGTGGCTTGACTTAGGCATACGGA
64 TTACGCCTCTCCGGTCGGCTCAGCACCCGTACGCCT-GTTTCATGGGTTGACTTAGGCATACGGA
* **
20855657 GTTCATTCCCA-GTCTAAGAT--CAGACCAGACA
128 GTTCATT-TCATGTCTAAG-TCCCAG-CTGGACA
* * * * * * * * ** *
20855688 GAGAGTTGTAGCAGCAGGATCGACAGCATGCAGGGGGGATCGAGTC-AGTCCCCGACTTGCGCAT
1 GAGGGTTGTGGCAGCGGGATCTACAGCACGCAGAGGGGACCGGGTCGA-TCCCCGGTTTGTGCAT
* * * * * * * * *
20855752 T-CTGCCTCTCCGGTCGACTGAGCGCCTGCACGCTTGTTTCGTGGGTTGGCTTAGGCACACGGAG
65 TAC-GCCTCTCCGGTCGGCTCAGCACCCGTACGCCTGTTTCATGGGTTGACTTAGGCATACGGAG
* * *
20855816 TTGATTCCATGTTTAAG
129 TTCATTTCATGTCTAAG
20855833 CATATGGAGT
Statistics
Matches: 483, Mismatches: 113, Indels: 52
0.75 0.17 0.08
Matches are distributed among these distances:
156 2 0.00
157 8 0.02
158 118 0.24
159 341 0.71
160 11 0.02
161 3 0.01
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (158 bp):
GAGGGTTGTGGCAGCGGGATCTACAGCACGCAGAGGGGACCGGGTCGATCCCCGGTTTGTGCATT
ACGCCTCTCCGGTCGGCTCAGCACCCGTACGCCTGTTTCATGGGTTGACTTAGGCATACGGAGTT
CATTTCATGTCTAAGTCCCAGCTGGACA
Found at i:20855616 original size:318 final size:317
Alignment explanation
Indices: 20855013--20855833 Score: 1030
Period size: 318 Copynumber: 2.6 Consensus size: 317
20855003 CCCAGTCTAA
* * * *
20855013 GCATATGGAGTTCATTCCCAATCTAAGA-TCGAACCAGACCGAGGGTTGTGACAGCAGGATCG--
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAG-ACCAGACAGAGGGTTGTGACAGCAGGATCGAC
*
20855075 -GTAACACGCAGGGGGGATCGGGTCGAT-CCTCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGA
65 AGT-ACAC-C-GGGGGGATCGGGTCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGGTCGGCTGA
* *
20855138 GCGCCCGTACGCCTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTTCATGTCTAAGTCCCA
126 GCGCCCGTACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCA
* * *
20855203 GCTGAACTGAGGGTTGTGGTAGCGGGATCTACAGCACGCAAAGAGGGACCGGGTCGATCCCCGAT
191 GCTGAACCGAGGGTTGTGGCAGCGGGATATACAGCACGCAAAGAGGGACCGGGTCGATCCCCGAT
* * * * *
20855268 TTGTGCATTACGCCTCTCCAGTCAGCTCAGCACCCGTACGCTTATTTCGTGGGTTGACTTAG
256 TTGTACATTACGCCTCTCCAGTCAGCTCAGCACCCGCACGATCATTTCGTGGCTTGACTTAG
* ** *
20855330 GCATACTGAGTTCATTCCCAGTCTAAGATTAGACTGGACAGAGGGTTGTGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACAGAGGGTTGTGACAGCAGGATCGACA
* * *
20855395 GTACACCGGAGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTTTCTGGTCGGCTGAGTGC
66 GTACACCGG-GGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* *
20855460 CCGTTCGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCAGTTG
130 CCGTACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCAGCTG
* * * * *
20855525 GACCGAGGGTTGTGGCAGCGGGATATACAGCACGTAGAGGGGGACCGGG-CTGATCCCCGGTTTG
195 AACCGAGGGTTGTGGCAGCGGGATATACAGCACGCAAAGAGGGACCGGGTC-GATCCCCGATTTG
* * * *
20855589 TACATTATGCCTCTTC-GATCGGCTCAGCACCCGCACGATCGTTTCGTGGCTTGACTTAG
259 TACATTACGCCTCTCCAG-TCAGCTCAGCACCCGCACGATCATTTCGTGGCTTGACTTAG
* *
20855648 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGAGTTGT-AGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACAGAGGGTTGTGA-CAGCAGGATCGAC
* ** * * * * *
20855712 AGCATGCAGGGGGGATCGAGTC-AGTCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCG
65 AGTACACCGGGGGGATCGGGTCGA-TCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* * * * * * * *
20855776 CCTGCACGCTTGTTTCGTGGGTTGGCTTAGGCACACGGAGTTGATTCCATGTTTAAGC
129 CCCGTACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGC
20855834 ATATGGAGTT
Statistics
Matches: 435, Mismatches: 59, Indels: 20
0.85 0.11 0.04
Matches are distributed among these distances:
316 1 0.00
317 150 0.34
318 275 0.63
319 7 0.02
320 2 0.00
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACAGAGGGTTGTGACAGCAGGATCGACA
GTACACCGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGTACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCAGCTGA
ACCGAGGGTTGTGGCAGCGGGATATACAGCACGCAAAGAGGGACCGGGTCGATCCCCGATTTGTA
CATTACGCCTCTCCAGTCAGCTCAGCACCCGCACGATCATTTCGTGGCTTGACTTAG
Found at i:20856221 original size:26 final size:26
Alignment explanation
Indices: 20856185--20856237 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20856175 GTTGACTTAG
20856185 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20856211 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20856237 G
1 G
20856238 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20856761 original size:343 final size:341
Alignment explanation
Indices: 20856172--20856896 Score: 1011
Period size: 343 Copynumber: 2.1 Consensus size: 341
20856162 ACTCATTTCG
*
20856172 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTA-GCATACGGAGTTCTTCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
20856237 GATCGAATCGGATCGAGGGTTACGATAGCAGGATCGGTAGCACGCAGGGGGGCCGGGCCGATCCC
65 GATCGAACCGGACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAGGGGGACCGAGCCGATCCC
** * * *
20856302 TGGCTTGCGCATTCTGACTCTCCGGTCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTA
130 CAGCTTGCGCATTCTGACTCTCCGGTCAGCTGAGCCCCCGCACGCCCATTTCGTGGGTTGGCTTA
* * * *
20856367 GGCATAGGGTGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACTGGT
195 GGCATAGGGAGTTCATTCCACGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGC
* * *
20856432 AGCATGCAGAGGGGGACCGGGTGGATCCTCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCG
260 AGCACGCAGAGGGGGACCGAGTGGATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCG
* *
20856497 CTCGCATGCTTGTTACA
325 CTCGCACGCTCGTTACA
**
20856514 TGGGTTGACTTAGACATACGGAGTTCTTCCCCAGTCTAAGCATTTGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAG-CATACGGAGTTCTTCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
20856579 GATCGGACCGGACCGAGGGTTTTGACAGCAGGATCGGCAGCACGGAGGGTGGACCGAGCTGATCC
65 GATCGAACCGGACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAGGG-GGACCGAGCCGATCC
* * * **
20856644 CCAGCTTGTGCATTCTGCCTCTCCGGTCAGCTGAGCCCCCGCATGCCCATTTTTTGGGTTGGCTT
129 CCAGCTTGCGCATTCTGACTCTCCGGTCAGCTGAGCCCCCGCACGCCCATTTCGTGGGTTGGCTT
* *
20856709 AGGCATAGGGAGTTCATTCCACGTCTAAGCCCTAGCCGGATCGAGGGTTGTGGCAGCGGGACCGG
194 AGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGG
* * * *
20856774 CAGCACGTAGAGGGGGACCGAGTTGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTTAGC
259 CAGCACGCAGAGGGGGACCGAGTGGATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGC
**
20856839 GCTCGCACGCTCGTTTTA
324 GCTCGCACGCTCGTTACA
* *
20856857 TGGGTTGACTTATGCATATGGAGTTCATT-CCCAATCTAAG
1 TGGGTTGACTTA-GCATACGGAGTTC-TTCCCCAGTCTAAG
20856897 ATCGGACTGA
Statistics
Matches: 336, Mismatches: 43, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
341 1 0.00
342 101 0.30
343 231 0.69
344 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (341 bp):
TGGGTTGACTTAGCATACGGAGTTCTTCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
ATCGAACCGGACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAGGGGGACCGAGCCGATCCCC
AGCTTGCGCATTCTGACTCTCCGGTCAGCTGAGCCCCCGCACGCCCATTTCGTGGGTTGGCTTAG
GCATAGGGAGTTCATTCCACGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCA
GCACGCAGAGGGGGACCGAGTGGATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCGC
TCGCACGCTCGTTACA
Found at i:20856998 original size:158 final size:157
Alignment explanation
Indices: 20856553--20857054 Score: 510
Period size: 158 Copynumber: 3.2 Consensus size: 157
20856543 CCCAGTCTAA
* * *
20856553 GCATTTGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTTTGACAGCAGGATCGGCA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-GAACGAGGGTTGTGACAGCAGGATCGGCA
** * * * *
20856618 GCACGGAGGGTGGACCGAGCTGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTCAGCTGAGCCCC
65 GCATAGAGGGGGGACCGAGCTGATCCCCAGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
* *
20856683 CGCATGCCCATTTTTTGGGTTGGCTTAG
130 CGCATGCCCGTTTTATGGGTTGGCTTAG
* * ** * * * *
20856711 GCATAGGGAGTTCATT-CCACGTCTAAG-CCCTAGCCGGATCGAGGGTTGTGGCAGCGGGACCGG
1 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGA-CC-GAACGAGGGTTGTGACAGCAGGATCGG
* * * * *
20856774 CAGCACGTAGA-GGGGGACCGAGTTGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTTAG
63 CAGCA--TAGAGGGGGGACCGAGCTGATCCCCAGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAG
* * * * *
20856838 CGCTCGCACGCTCGTTTTATGGGTTGACTTAT
126 CGCCCGCATGCCCGTTTTATGGGTTGGCTTAG
* * * * * *
20856870 GCATATGGAGTTCATTCCCAATCTAAGATCGGACTGAACTGAGGGTTGCGATAGTAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAAC-GAGGGTTGTGACAGCAGGATCGGCA
* *
20856935 GCATACAGGGGGGACC-AGGCTGATCCCCAGCTTGTGCATTCTGCCTCTTCGGCCGGCTGAGCGC
65 GCATAGAGGGGGGACCGA-GCTGATCCCCAGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCGC
* **
20856999 CCGCATGCCCGTTTCATGCATTGGCTTAG
129 CCGCATGCCCGTTTTATGGGTTGGCTTAG
* *
20857028 GCATACGAAGTTCATT-CCATGTCTAAG
1 GCATATGGAGTTCATTCCCA-GTCTAAG
20857055 CATACGAAGT
Statistics
Matches: 274, Mismatches: 60, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
157 12 0.04
158 143 0.52
159 112 0.41
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACGAGGGTTGTGACAGCAGGATCGGCAG
CATAGAGGGGGGACCGAGCTGATCCCCAGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCGCCC
GCATGCCCGTTTTATGGGTTGGCTTAG
Found at i:20857058 original size:26 final size:26
Alignment explanation
Indices: 20857028--20857080 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20857018 ATTGGCTTAG
20857028 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
20857054 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20857080 G
1 G
20857081 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20857804 original size:26 final size:26
Alignment explanation
Indices: 20857753--20857805 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20857743 GTTGACTTAG
*
20857753 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGCCTAA
*
20857779 GCATACGGAGTTCATTCCC-AGCCTAA
1 GCATACAGAGTTCA-TCCCTAGCCTAA
20857805 G
1 G
20857806 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGCCTAA
Found at i:20858094 original size:159 final size:157
Alignment explanation
Indices: 20857819--20858279 Score: 417
Period size: 159 Copynumber: 2.9 Consensus size: 157
20857809 GGATCAGACT
*
20857819 GAGGGTTGTGGCAGTAGGATCGGCAGCACGCAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTC
1 GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTC
* * * * * *
20857884 TGCCTTTCCAGTCGGTTGAGCGCCCGTACGCCTGTTTCATGGGTTGGCTTAGGCATACGAAGTTG
66 TGCCTCTCCAGTCGGCTCAGCGCCCGCACGCCTATTTCATGGGTTGACTTAGGCATACGAAGTTG
20857949 ATTTCATGTCTAAGCCCCAGCTGGACC
131 ATTTCATGTCTAAGCCCCAGCTGGACC
* * * * *
20857976 GAGGGTTGTGGCAGCGGGATCTGCAGCACGCAAAGGGGGACCGGGCCGATCCTCGGCTTGTGCAT
1 GAGGGTTGTGGCAGCAGGATCGGCAGCACGC--AGGGGGACCGGGCCAATCCCCGGCTTGCGCAT
* * * * *
20858041 TAC-GCCTCTCCGGTTGGCTCAGTGCCCGCACG-CTCATTTCGTGGGTTGACTTAGGCATACGGA
64 T-CTGCCTCTCCAGTCGGCTCAGCGCCCGCACGCCT-ATTTCATGGGTTGACTTAGGCATACGAA
* * ** * * *
20858104 GTTCATTCCCA-GTCTAAG-ATCGGATCAGACC
127 GTTGATT-TCATGTCTAAGCCCCAGCT-GGACC
* * * * * * * * **
20858135 AAGGGTTGCGGTAGCAGGATCGACAACACGCAAGGGGATCGGGTCGGTCCCCGGCTTGCGCATTC
1 GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTC
* * * ** * * * * * *
20858200 TGCCTCTCCGGTCGACTGAGCGCCCGCGTGCTTGTTTCATGGGTTGGCTTAGGCACACGGAGTTC
66 TGCCTCTCCAGTCGGCTCAGCGCCCGCACGCCTATTTCATGGGTTGACTTAGGCATACGAAGTTG
* *
20858265 ATTCCATGTTTAAGC
131 ATTTCATGTCTAAGC
20858280 ATACGGAGTT
Statistics
Matches: 245, Mismatches: 49, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
156 4 0.02
157 115 0.47
158 6 0.02
159 117 0.48
160 3 0.01
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.23
Consensus pattern (157 bp):
GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTC
TGCCTCTCCAGTCGGCTCAGCGCCCGCACGCCTATTTCATGGGTTGACTTAGGCATACGAAGTTG
ATTTCATGTCTAAGCCCCAGCTGGACC
Found at i:20858251 original size:157 final size:156
Alignment explanation
Indices: 20857779--20858269 Score: 538
Period size: 157 Copynumber: 3.1 Consensus size: 156
20857769 CCTAGTCTAA
* * *
20857779 GCATACGGAGTTCATTCCCAGCCTAAGATCGGATCAGACTGAGGGTTGTGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAGGATC-GCA
* * * * *
20857844 GCACGCAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTTTCCAGTCGGTTGAGCGCCC
65 GCACGCAAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
* *
20857909 GTACGCCTGTTTCATGGGTTGGCTTAG
130 GCACGCTTGTTTCATGGGTTGGCTTAG
* * * * ** * * *
20857936 GCATACGAAGTTGATT-TCATGTCTAAG-CCCCAGCTGGACCGAGGGTTGTGGCAGCGGGATCTG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATC-AGACCGAGGGTTGTGGCAGCAGGATC-G
* * * *
20857999 CAGCACGCAAAGGGGGACCGGGCCGATCCTCGGCTTGTGCATTAC-GCCTCTCCGGTTGGCTCAG
63 CAGCACGC-AA-GGGGACCGGGCCGATCCCCGGCTTGCGCATT-CTGCCTCTCCGGTCGGCTGAG
* ** * *
20858063 TGCCCGCACGCTCATTTCGTGGGTTGACTTAG
125 CGCCCGCACGCTTGTTTCATGGGTTGGCTTAG
* * *
20858095 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAGGATCG-CA
* * * * *
20858160 ACACGCAAGGGGATCGGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCC
65 GCACGCAAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
**
20858225 GCGTGCTTGTTTCATGGGTTGGCTTAG
130 GCACGCTTGTTTCATGGGTTGGCTTAG
*
20858252 GCACACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
20858270 ATGTTTAAGC
Statistics
Matches: 267, Mismatches: 58, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
156 6 0.02
157 135 0.51
158 4 0.01
159 116 0.43
160 6 0.02
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAGGATCGCAG
CACGCAAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCG
CACGCTTGTTTCATGGGTTGGCTTAG
Found at i:20858667 original size:26 final size:26
Alignment explanation
Indices: 20858631--20858683 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20858621 GTTGACTTAG
20858631 GCATACAGAGTTC-ATCCCCAGTCTAA
1 GCATACAGAGTTCAAT-CCCAGTCTAA
*
20858657 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
20858683 G
1 G
20858684 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:20859003 original size:26 final size:26
Alignment explanation
Indices: 20858974--20859024 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
20858964 GTTGACTTAG
20858974 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * * *
20859000 GCATAGGGAGTTCATTCCTAGTCTA
1 GCATACGAAGTTCATCCCCAGTCTA
20859025 GGATCGGACT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20859266 original size:343 final size:343
Alignment explanation
Indices: 20858608--20859343 Score: 822
Period size: 343 Copynumber: 2.1 Consensus size: 343
20858598 GCGTCCGTAT
20858608 GCTCGTT-TCGTGGGTTGACTTAGGCATAC-AGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
1 GCTCGTTCT-GTGGGTTGACTTAGGCATACGA-AGTTCATCCCCAGTCTAAGCATACGGAGTTCA
* * ** *
20858671 ATCCCAGTCTAAGATCAAACCAGATCGAGGGTTACAGCAGCAGGATCGATAGCACGCAGGGGGGG
64 ATCCCAGTCTAAGATCAAACCAGACCGAGGGTTACAGCAGCAAGATCGATAGCACGCAGGGCAGA
* * * * * *
20858736 TCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCAGACTGAGCGCCCGCACACCCGTTTC
129 CCGAGCCGATCCCTGGCTTACGCATTCTACCTCTCCGGCAGACTGAGCACCCACACACCCGTTTC
* **
20858801 GTGGGTTGGCTTAGGCATAGGGATTTCATTCCATGTCTAAACCCCAGTCGAACCGAGGGTTGTGG
194 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAACCGAACCGAGGGTTGTGG
* * * * *
20858866 CAGCGGGATCGACAGCATGCAAAGGGGGACTGAGTCGATCCTCGACTTACGCATTATGCCTCTTC
259 CAGCGGGACCGACAGCACGCAAAGGGGGACGGAGCCGATCCTCGACTTACACATTATGCCTCTTC
** * *
20858931 GGTCGGCTCAACGCTCGTAC
324 GACCGGCTCAACGCCCGCAC
* *
20858951 GC-CTGTTCTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATAGGGAGTTCAT
1 GCTC-GTTCTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCAA
* * ** ** * * *
20859015 TCCTAGTCTAGGATCGGACTGGACCGAGGGTT-CTGACAGCAAGATCGGTAGCACGGAGGGCAGA
65 TCCCAGTCTAAGATCAAACCAGACCGAGGGTTACAG-CAGCAAGATCGATAGCACGCAGGGCAGA
** * ** * *
20859079 CCGAGTTGATCCCCT-GCTTACGCATTCTACCTCTCTGGTC-GGTTGAGCACCTACACGCCCGTT
129 CCGAGCCGAT-CCCTGGCTTACGCATTCTACCTCTCCGG-CAGACTGAGCACCCACACACCCG-T
* * *
20859142 TTC-TGGGTTGGCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTG
191 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAACCGAACCGAGGGTTG
* * * * * * *
20859206 TGGTAGCGGGACCGCCAGCACGGAGAGGGGGACGGGGCCGATCC-CTGATTTGCACATTATGCCT
256 TGGCAGCGGGACCGACAGCACGCAAAGGGGGACGGAGCCGATCCTC-GACTTACACATTATGCCT
*
20859270 CTTCGACCGGCTCAGCGCCCGCAC
320 CTTCGACCGGCTCAACGCCCGCAC
* * * * * *
20859294 GCTCGTTTTATGGGTTGACTTATGCAAACGGAGTTCATTCCCAGTCTAAG
1 GCTCGTTCTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAG
20859344 ATTGGACCGA
Statistics
Matches: 326, Mismatches: 58, Indels: 18
0.81 0.14 0.04
Matches are distributed among these distances:
342 4 0.01
343 310 0.95
344 12 0.04
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (343 bp):
GCTCGTTCTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCAAT
CCCAGTCTAAGATCAAACCAGACCGAGGGTTACAGCAGCAAGATCGATAGCACGCAGGGCAGACC
GAGCCGATCCCTGGCTTACGCATTCTACCTCTCCGGCAGACTGAGCACCCACACACCCGTTTCGT
GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAACCGAACCGAGGGTTGTGGCA
GCGGGACCGACAGCACGCAAAGGGGGACGGAGCCGATCCTCGACTTACACATTATGCCTCTTCGA
CCGGCTCAACGCCCGCAC
Found at i:20859333 original size:159 final size:158
Alignment explanation
Indices: 20859132--20859502 Score: 404
Period size: 158 Copynumber: 2.3 Consensus size: 158
20859122 TGAGCACCTA
* * *
20859132 CACGCCCGTTTTCTGGGTTGGCTTAGGCATA-GGTAGTTCATTCCATGTCTAAGCCCCAACCGGA
1 CACGCTCGTTTTATGGGTTGGCTTAGGCATACGG-AGTTCATTCCATGTCTAAGCCCCAACCGAA
* * * ** ** * *
20859196 CCGAGGGTTGTGGTAGCGGGACCGCCAGCACGGAGAGGGGGACGGGGCCGATCCCTGATTTGCAC
65 CCGAGGGTTGTGGCAGCAGGACCGACAGCACACAG-GGGGGACCAGGCCGATCCCCGACTTGCAC
20859261 ATTATGCCTCTTCGACCGGCTCAGCGCCCG
129 ATTATGCCTCTTCGACCGGCTCAGCGCCCG
* * * *****
20859291 CACGCTCGTTTTATGGGTTGACTTATGCAAACGGAGTTCATTCCCA-GTCTAAGATTGGACCGAA
1 CACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGAA
* * * * ** * *
20859355 CTGAGGGTTGTGGCAGTAGGATCGACAGCATACAGGGGGGACCAGGTTGATCCCCGGCTTGCGCA
65 CCGAGGGTTGTGGCAGCAGGACCGACAGCACACAGGGGGGACCAGGCCGATCCCCGACTTGCACA
* *
20859420 TTCTGCCTCTTCGACCGGCTGAGCGCCCG
130 TTATGCCTCTTCGACCGGCTCAGCGCCCG
* **
20859449 CACGCTCGTTTCATGCATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
20859503 ATACGGAGTT
Statistics
Matches: 172, Mismatches: 37, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
157 3 0.02
158 92 0.53
159 72 0.42
160 5 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAAC
CGAGGGTTGTGGCAGCAGGACCGACAGCACACAGGGGGGACCAGGCCGATCCCCGACTTGCACAT
TATGCCTCTTCGACCGGCTCAGCGCCCG
Found at i:20859505 original size:26 final size:26
Alignment explanation
Indices: 20859475--20859527 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20859465 ATTGGCTTAG
20859475 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20859501 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20859527 G
1 G
20859528 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20860417 original size:26 final size:26
Alignment explanation
Indices: 20860368--20860420 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20860358 GTTGACTTAG
*
20860368 GCATACGGAGTTCATCCCTGGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
20860394 GCATATGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCA-TCCCTAGTCTAA
20860420 G
1 G
20860421 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:20860862 original size:157 final size:159
Alignment explanation
Indices: 20860529--20860931 Score: 460
Period size: 158 Copynumber: 2.5 Consensus size: 159
20860519 CGCATGCCCG
* *
20860529 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAGGCGGACCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
* * * * * *
20860594 GTGGCAGTGGGATCGGCCGCACTCAGAGGGGGATTGGGCCGATCCCGAGCTTACGCATTCTACCT
66 GTGGCAGCGGGATCGACAGCACTCAGAGGAGGACTGGGCCGATCCCGAGCTTACGCATTATACCT
** * * *
20860659 CTCTGGTTGGCTGAGCGCCCGCACGCCTA
131 CTCCAGCTGGCTCAACGCCCGCACGCCTA
* *
20860688 TTTTGTAGGTTGGCTTAGGCATAGGGAGTTCATT-CATGTCTAAGCCCCAGCCGGACCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
* ** *
20860752 GTGGCAGCGGGATCGACAGTACGTC-GA-GAGGACTGGGCCGATCCCCGA-CTTGTGCATTATGC
66 GTGGCAGCGGGATCGACAGCAC-TCAGAGGAGGACTGGGCCGAT-CCCGAGCTTACGCATTATAC
20860814 CTCTCCAGCTGGCTCAACGCCCGCACGCTCT-
129 CTCTCCAGCTGGCTCAACGCCCGCACGC-CTA
* * * ** *
20860845 TTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCCA-GTCTAA-CATCAGACCGGATCGAGGG
1 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGG
* * *
20860908 TTGCGGTAGCAGGATCGACAGCAC
64 TTGTGGCAGCGGGATCGACAGCAC
20860932 GCAGGGGGGA
Statistics
Matches: 207, Mismatches: 31, Indels: 13
0.82 0.12 0.05
Matches are distributed among these distances:
157 79 0.38
158 93 0.45
159 35 0.17
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
GTGGCAGCGGGATCGACAGCACTCAGAGGAGGACTGGGCCGATCCCGAGCTTACGCATTATACCT
CTCCAGCTGGCTCAACGCCCGCACGCCTA
Found at i:20861391 original size:173 final size:171
Alignment explanation
Indices: 20860991--20861393 Score: 425
Period size: 171 Copynumber: 2.3 Consensus size: 171
20860981 CGACTGAGTG
* * *
20860991 CCCGCACGTTCATTTTGTGGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAG-ATCAGAT
1 CCCGCACGCTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCA-TCCCAGTCTAAGCACCAGAT
* * * * ***
20861055 CGGATCGAGGGTTGCGCCAGCAGGTCCAGCAGCAGGATCGGCAGCACGTAGGGGGGGACCAAGTC
65 CAGACCGAGGGTTGCGCCAGCAGGACCAGCAGCAGGATCGGCAGCAAGTAAAAGGGGACCAAGTC
* * *
20861120 GATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGGTTGAGCA
130 GATCCCCAGCTTGCGCATTATGCCTCTTCGGCCGGTTGAGCA
** * ** * * *
20861162 CATGTACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCGTTCCATGTCTAAGCCCCAG-T
1 CCCGCACGCTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATCCCA-GTCTAAGCACCAGAT
* * * * * ** *
20861226 CAGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGGTAGCAAGTAAAAGGGGA-CTGGGC
65 CAGACCGAGGGTTGCGCCAGCAGGACCAGCAGCAGGATCGGCAGCAAGTAAAAGGGGACCAAGTC
* *
20861290 TGATCCCCAGCTTGTGCATTATGCCTTTTCCGGACCGGTTGAGCA
130 -GATCCCCAGCTTGCGCATTATGCCTCTT-CGG-CCGGTTGAGCA
* * *
20861335 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
1 CCCGCACGCTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCAT-CCCAGTCTAAGCA
20861394 TATGTAGTTC
Statistics
Matches: 184, Mismatches: 42, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
170 7 0.04
171 113 0.61
172 6 0.03
173 55 0.30
174 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (171 bp):
CCCGCACGCTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATCCCAGTCTAAGCACCAGATC
AGACCGAGGGTTGCGCCAGCAGGACCAGCAGCAGGATCGGCAGCAAGTAAAAGGGGACCAAGTCG
ATCCCCAGCTTGCGCATTATGCCTCTTCGGCCGGTTGAGCA
Found at i:20861441 original size:58 final size:58
Alignment explanation
Indices: 20861351--20861466 Score: 187
Period size: 58 Copynumber: 2.0 Consensus size: 58
20861341 CGCTCGTTTT
* * * * *
20861351 GTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATGTAGTTCATTTC
1 GTGGGTTGACGTAGGCATACCAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTTC
20861409 GTGGGTTGACGTAGGCATACCAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTTC
1 GTGGGTTGACGTAGGCATACCAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTTC
20861467 TAGTCTAAGA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (58 bp):
GTGGGTTGACGTAGGCATACCAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTTC
Found at i:20864343 original size:184 final size:184
Alignment explanation
Indices: 20864008--20864347 Score: 441
Period size: 184 Copynumber: 1.8 Consensus size: 184
20863998 GTTGACTTAG
* *
20864008 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGATTGAGGGTTGCAGTAGCAGGATCGATA
1 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCGATA
* *
20864073 GCACACAGGGGCGACCGGGCCTATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCACC
66 GCACACAGGGGCGACAGGGCCTATCCCAGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCACC
***
20864138 CGCACGTTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAT
131 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAT
* * * * * *
20864192 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGCTCGAGGGTTGCGGCAGCAGGATCGGTA
1 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCGATA
* * * * ****
20864257 GCACGCAGGGGGGACAGGG-TTGATCCCTAG-CTTGTGCATTCTGCCTCTCCGGTTGGCTGAGCA
66 GCACACAGGGGCGACAGGGCCT-ATCCC-AGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCA
* *
20864320 CCCGCATGCCCGTTTCGTGGGTTGGCTT
129 CCCGCACGCCCGTTTCATGGGTTGGCTT
20864348 TGGCTGAGTG
Statistics
Matches: 131, Mismatches: 23, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
183 1 0.01
184 129 0.98
185 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCGATA
GCACACAGGGGCGACAGGGCCTATCCCAGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCACC
CGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAT
Found at i:20864380 original size:38 final size:38
Alignment explanation
Indices: 20864309--20864381 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 38
20864299 GCCTCTCCGG
**
20864309 TTGGCTGAGCACCCGCATGCCCGTTTCGTGGGTTGGCT
1 TTGGCTGAGCACCCGCATGCCCGTTTCAAGGGTTGGCT
** *
20864347 TTGGCTGAGTGCCCGCATGCCTGTTTCAAGGGTTG
1 TTGGCTGAGCACCCGCATGCCCGTTTCAAGGGTTG
20864382 TCTTAGGCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 30 1.00
ACGTcount: A:0.10, C:0.26, G:0.34, T:0.30
Consensus pattern (38 bp):
TTGGCTGAGCACCCGCATGCCCGTTTCAAGGGTTGGCT
Found at i:20864930 original size:26 final size:26
Alignment explanation
Indices: 20864878--20864930 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20864868 GTTGGCTTAG
*
20864878 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
*
20864904 GCATATGGAGTTCATTCCCAT-TATAA
1 GCATACGGAGTTCATT-CCATGTATAA
20864930 G
1 G
20864931 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:20865275 original size:26 final size:26
Alignment explanation
Indices: 20865245--20865297 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20865235 GTTGACTTAG
*
20865245 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCACAGTCTAA
*
20865271 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
20865297 G
1 G
20865298 ATCGATCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTCTAA
Found at i:20866126 original size:158 final size:158
Alignment explanation
Indices: 20865675--20866128 Score: 457
Period size: 158 Copynumber: 2.9 Consensus size: 158
20865665 AGCATGACCA
* * * * * * *
20865675 GCAGCAGGATCGATAGCATGCAGGGGGGACCAAGCCGATCCCCGGCATATGTATTCTACCTCTCC
1 GCAGCAGGATCGACAGCACGTAGGGGGGACCAAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCC
** * * * * *
20865740 GGCCAACTGAGCGCCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
66 GATCGACTGAGC-ACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
*
20865805 TCTAAGCCCCAGCCGGACTGAGGGTTGTG
130 TCTAAGCCCCAGCCGGACTGAGGGTTGCG
* * * * *** * * * *
20865834 GCAAC-GAGACCGGCAGCACGTAGAGAGGGATTGAGTCGATCCCCAGCTTGCGCATTATGCCTCT
1 GCAGCAG-GATCGACAGCACGTAG-GGGGGACCAAGCCGATCCCCGGCTTGTGCATTCTGCCTCT
* * * * *
20865898 CCGATCGACTCAGCACCCGAATGCTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCA
64 CCGATCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCA
* ** * *
20865963 -ATCTAAG-ATCGGACTGGA-TCGAGGGTTGCG
128 TGTCTAAGCCCCAG-CCGGACT-GAGGGTTGCG
* *
20865993 GCAGCAGGATTGACAGCACGTAGGGGGGACCAAGCCGATCCCTGGCTTGTGCATTCTGCCTCTCC
1 GCAGCAGGATCGACAGCACGTAGGGGGGACCAAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCC
* * *
20866058 GATCGACTGAGCACCTGCACACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
66 GATCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
20866123 CTAAGC
131 CTAAGC
20866129 ATACGGAGTT
Statistics
Matches: 229, Mismatches: 58, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.01
158 94 0.41
159 90 0.39
160 42 0.18
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCAGCAGGATCGACAGCACGTAGGGGGGACCAAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCC
GATCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCCCCAGCCGGACTGAGGGTTGCG
Found at i:20866137 original size:26 final size:26
Alignment explanation
Indices: 20866101--20866153 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20866091 GTTGGCTTAG
20866101 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
20866127 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
20866153 G
1 G
20866154 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:20866679 original size:25 final size:25
Alignment explanation
Indices: 20866651--20866705 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
20866641 GTTGGCTTAG
20866651 GCATACGAAGTTCATTCCATGTCAA
1 GCATACGAAGTTCATTCCATGTCAA
*
20866676 GCATACGGAGTTCATTCCATGTCAA
1 GCATACGAAGTTCATTCCATGTCAA
20866701 GCATA
1 GCATA
20866706 TGGTGATCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCATGTCAA
Found at i:20866715 original size:25 final size:25
Alignment explanation
Indices: 20866651--20866718 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
20866641 GTTGGCTTAG
* *
20866651 GCATACGAAGTTCATTCCATGTCAA
1 GCATACGGAGATCATTCCATGTCAA
*
20866676 GCATACGGAGTTCATTCCATGTCAA
1 GCATACGGAGATCATTCCATGTCAA
* *
20866701 GCATATGGTGATCATTCC
1 GCATACGGAGATCATTCC
20866719 CAGTCTAAGA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGGAGATCATTCCATGTCAA
Found at i:20867427 original size:26 final size:26
Alignment explanation
Indices: 20867397--20867449 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20867387 GTTGACTTAG
*
20867397 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20867423 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20867449 G
1 G
20867450 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20868138 original size:26 final size:26
Alignment explanation
Indices: 20868108--20868160 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20868098 GTTGACTTAG
20868108 GCATACCGAGTTCA-TCCCTAGTCTAA
1 GCATACCGAGTTCATTCCC-AGTCTAA
*
20868134 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
20868160 G
1 G
20868161 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:20868441 original size:158 final size:158
Alignment explanation
Indices: 20868134--20868467 Score: 391
Period size: 158 Copynumber: 2.1 Consensus size: 158
20868124 CCTAGTCTAA
* *
20868134 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCAAGGGTTGTGACAGCAGGATCGACA
* * * **
20868199 GCACGCAGGGGGGACCAGACCGATCCCCGGCTTGCACATTATGCCTCTCCAACTGACTCAATGCC
66 GCACGCAGGAGGGACCAGACCGATCCCCAGCTTGCACATTATACCTCTCCAACTGACTCAACACC
* * *
20868264 CGAACGCTCGTTTCGTGGGTTGACTTAG
131 CGAACACTCATTTCATGGGTTGACTTAG
* ** *
20868292 GCATACGGAGTTCATTCCCAATTTAAGATCGGATCAGACCAAGGGTTGTGGTAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCAAGGGTTGTGACAGCAGGATCGACA
* ** ** * * * * * * *
20868357 GCACGTAGGAGGGACTGGGTCGGTCCCCAGCTTGCGCATTCTACCTCTCCGA-TCGGCTGAGCAC
66 GCACGCAGGAGGGACCAGACCGATCCCCAGCTTGCACATTATACCTCTCCAACT-GACTCAACAC
* * *
20868421 CCGCATACTCATTTCATGGGTTGGCTTAG
130 CCGAACACTCATTTCATGGGTTGACTTAG
20868450 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
20868468 ATGTCTAAGT
Statistics
Matches: 146, Mismatches: 29, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
157 1 0.01
158 145 0.99
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCAAGGGTTGTGACAGCAGGATCGACA
GCACGCAGGAGGGACCAGACCGATCCCCAGCTTGCACATTATACCTCTCCAACTGACTCAACACC
CGAACACTCATTTCATGGGTTGACTTAG
Found at i:20868482 original size:26 final size:26
Alignment explanation
Indices: 20868452--20868502 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20868442 TGGCTTAGGC
*
20868452 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACGAAGTTCATTCCCA-GTCTAAGT
20868478 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
20868503 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGT
Found at i:20868989 original size:551 final size:551
Alignment explanation
Indices: 20867666--20869054 Score: 1342
Period size: 551 Copynumber: 2.5 Consensus size: 551
20867656 GGGGATCGGG
*** * * * ** * * * * *
20867666 CCGATCCCCGGCTTGTGCATTATGCCTTTCCAGCTGGCTCAGCGCCTGCACGCTCATTCCGTGGG
1 CCGATCCCCGGCTTACACATTATGCCTCTCCAACTGACTCAATGCCCGAACGCTCGTTTCATGGG
* * * * * *** * ** * *
20867731 ATGAATTAGGCATGCGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTACGACAGTA
66 TTGACTTAGGCATACGGAGTTCATTCCCAATTTAAGACCAGATCAGACCAAGGGTTGTGGCAGCA
* * * * * * * * * **
20867796 GGATCGATAGCACGCAAGAAGGGACCGGGCTAATCCCCCGCTTGTGCATTCTGCCTCTCCGGTCG
131 GGACCGACAGCACAC-AGGAGGGACCGAGCCAATCCCCAGCTTGCGCATTCTACCTCTCCGACCG
* ** * ** * *
20867861 GCTGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTACATATCTAAG
195 ACTGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* ** *
20867926 CATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTACGGTAGCAGGACTAGTAG
260 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCAGGACCAGTAG
* * **
20867991 CAGGATCGGTAGCACACAAGGGGGACCGGGCCAATCCCTGGCTTGTGCATTATGCCTCCCCAGCC
325 CAGGATCAGCAGCACACAAGGGGGACCGGGCCAATCCCTGGCTTACGCATTATGCCTCCCCAGCC
* *
20868056 TGCCTCTCCGACCGGTTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACCGAGTTC
390 TGCCTCTCCGACCGGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACCGAGTTA
* * * **
20868121 ATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGAC
455 ATCCCTAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTACGAC
* **
20868186 AGCAGGATCGACAGCACGCAGGGGGGACCAGA
520 AGCAGGATCGACAACACGCAAAGGGGACCAGA
* *
20868218 CCGATCCCCGGCTTGCACATTATGCCTCTCCAACTGACTCAATGCCCGAACGCTCGTTTCGTGGG
1 CCGATCCCCGGCTTACACATTATGCCTCTCCAACTGACTCAATGCCCGAACGCTCGTTTCATGGG
* * *
20868283 TTGACTTAGGCATACGGAGTTCATTCCCAATTTAAGATCGGATCAGACCAAGGGTTGTGGTAGCA
66 TTGACTTAGGCATACGGAGTTCATTCCCAATTTAAGACCAGATCAGACCAAGGGTTGTGGCAGCA
** ** * * * ** * *
20868348 GGATTGACAGCACGTAGGAGGGACTGGGTCGGTCCCCAGCTTGCGCATTCTACCTCTCCGATCGG
131 GGACCGACAGCACACAGGAGGGACCGAGCCAATCCCCAGCTTGCGCATTCTACCTCTCCGACCGA
* * *
20868413 CTGAGCACCCGCATACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGT
196 CTGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * *
20868478 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGTAGGACCAGTAGC
261 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCAGGACCAGTAGC
* * * * * * * *
20868543 AGGATCAGCAGCATACAAGGGGGATCGGGTCAAT-CCTCGGCTTACGTATTCTGCCT-CTCTGGC
326 AGGATCAGCAGCACACAAGGGGGACCGGGCCAATCCCT-GGCTTACGCATTATGCCTCCCCAGCC
* * * * *
20868606 TGACCTCTCTGATCGGCTGAGCGC-CTGCATGCTTGTTTCATGGGTTGACTTAGGCATACGGAGT
390 TG-CCTCTCCGACCGGCTGAGCGCTC-GCACGCTCGTTTCATGGGTTGACTTAGGCATACCGAGT
*
20868670 TAAT-CCTCAATCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGAATCAGACCGAGGGTTAC
453 TAATCCCT-AATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTAC
** * *
20868734 GGTAGCAGGATCGACAACACGTAAAGGGGACCAGG
517 GACAGCAGGATCGACAACACGCAAAGGGGACCAGA
* * * * ** * * * *
20868769 CCGATCCCTGGGTTACGCATTTTGCCTCTCCGGCTGGCTGAGCT-CCCG-ATGC-CTGTTTCATG
1 CCGATCCCCGGCTTACACATTATGCCTCTCCAACTGACTCA-ATGCCCGAACGCTC-GTTTCATG
* * * * ** * *
20868831 GGTTGGCTTAGGTATAGGGAGTTCATT-CC-ATGTCTAAGCCCTAG-TTGGATCGAGGGTTGTGG
64 GGTTGACTTAGGCATACGGAGTTCATTCCCAAT-T-TAAGACC-AGATCAGACCAAGGGTTGTGG
** ** * * * * *
20868893 CAGTGGGACCGGTAGCACACAGAGGGGGACCGAGCCAAT-CCCTGACTTGTGCATTGTGCCTCTC
126 CAGCAGGACCGACAGCACACAG-GAGGGACCGAGCCAATCCCCAG-CTTGCGCATTCTACCTCTC
* * * * ** *
20868957 TGGCCGACTGAGCGCCTGTTTGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATG
189 CGACCGACTGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
*
20869022 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
254 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
20869055 GTTTAAGCCA
Statistics
Matches: 686, Mismatches: 140, Indels: 23
0.81 0.16 0.03
Matches are distributed among these distances:
548 2 0.00
549 4 0.01
550 83 0.12
551 477 0.70
552 120 0.17
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (551 bp):
CCGATCCCCGGCTTACACATTATGCCTCTCCAACTGACTCAATGCCCGAACGCTCGTTTCATGGG
TTGACTTAGGCATACGGAGTTCATTCCCAATTTAAGACCAGATCAGACCAAGGGTTGTGGCAGCA
GGACCGACAGCACACAGGAGGGACCGAGCCAATCCCCAGCTTGCGCATTCTACCTCTCCGACCGA
CTGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCAGGACCAGTAGC
AGGATCAGCAGCACACAAGGGGGACCGGGCCAATCCCTGGCTTACGCATTATGCCTCCCCAGCCT
GCCTCTCCGACCGGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACCGAGTTAA
TCCCTAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTACGACA
GCAGGATCGACAACACGCAAAGGGGACCAGA
Found at i:20869031 original size:26 final size:26
Alignment explanation
Indices: 20869001--20869053 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20868991 GTTGGCTTAG
*
20869001 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20869027 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20869053 G
1 G
20869054 AGTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20869433 original size:26 final size:26
Alignment explanation
Indices: 20869396--20869448 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20869386 GTTGACTTAG
*
20869396 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20869422 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20869448 G
1 G
20869449 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20869946 original size:26 final size:26
Alignment explanation
Indices: 20869910--20869960 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20869900 TGACTTAGAC
*
20869910 ATACAGAGTTCATCCCCAGTCTAAGT
1 ATACAGAGTTCATCCACAGTCTAAGT
* *
20869936 ATACGGAGTTCATTCACAGTCTAAG
1 ATACAGAGTTCATCCACAGTCTAAG
20869961 ATCGAATCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCACAGTCTAAGT
Found at i:20870137 original size:513 final size:511
Alignment explanation
Indices: 20869313--20870702 Score: 1356
Period size: 525 Copynumber: 2.7 Consensus size: 511
20869303 CAAACAAAGC
* * *** * * * * * *
20869313 GGGATCAGGTCGATCCCCGACTTGCACATTATGCCTCTCCAGCAAGCTCATCGCCCACACACT-T
1 GGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTTGGCCAGCTGAGCACCCACACGCTCG
* *
20869377 TTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCA
66 TTTT-GTGGGTTGACTTAGACATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCA
* * * * ** * *
20869442 GTCTAAGATCAGACCAGA-CTGA-AGTTGCGGTAGTAGGATCGGTAGCATGTAAGGGGGATCAGG
130 GTCTAAGATCAGACCAGATC-GAGGGTTGCAGCAGCAGGATCGACAGCACGTAAGGGGGATCGGG
* * * * * * **
20869505 CCGGTCCTCGGCTTACGCATTCTGCCTCTCCGACTGGTTGAGTGCCCGCATGCCTGTTTCATGGG
194 CCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCACGCCCATTTCATGGG
** * * * * *
20869570 TTCACTTAGGTATAGGGAATTCGTTCAATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACG
259 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAACG
** *
20869635 GGATCGGCAGCATACAGAGGGGGACCGGGCAAATCCCTGGCCTGCGTATTATGCCTCTCCAG-CA
324 GGA-CGGCAGCACGCAGAGGGGGACCGGGCAAATCCCTGGCCTGCGCATTATGCCTCTCCAGTC-
* * * * *
20869699 GGCTCAGTGCTCGAATGCTCATTTCATG-GGTTGACTTAGGCATATAGAGTTCATTCCCA-GTCT
387 GGCTCAGTGCTCGAACGCTCATTT--TGTGGTTGACCTAGGCATACAAAGATCATT-CCATGTCT
** * * * * *
20869762 AAGATCG-GATCGGATCGAGGGTTGCGGTAGCAGGACC-AGTAGTAGGATCGGTAGCACAC-AGA
449 AAGCCCGAG-TCAGA-CGAGGGTTGCGGCAGCAGGACCGA-CAGCAGGATCGATAGCAC-CTAGA
20869824 G-
510 GA
* *
20869825 GGGATCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTTTGGCCAGCTGAGCACCCACACGCTCG
1 GGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTTGGCCAGCTGAGCACCCACACGCTCG
* * * *
20869890 TTTTGTGGGTTGACTTAGACATACAGAGTTCATCCCCAGTCTAAGTATACGGAGTTCATTCACAG
66 TTTTGTGGGTTGACTTAGACATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAG
* * * *
20869955 TCTAAGATC-GAATCAGATCGAGGGTTGCAACAGCAGGATCGACAGCACGTAGGGGGGATTGGGC
131 TCTAAGATCAG-ACCAGATCGAGGGTTGCAGCAGCAGGATCGACAGCACGTAAGGGGGATCGGGC
* * *
20870019 CAATCCTCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCATTTCATGGGT
195 CGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCACGCCCATTTCATGGGT
* * * *
20870084 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGAGGGTTCTGG-AAGCA
260 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAA-CG
* * ** ** * * *
20870148 GGACCGACAGCACGCAGAAGGGGACCAAGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCAGTCG
324 GGA-CGGCAGCACGCAGAGGGGGACCGGGCAAATCCCTGGCCTGCGCATTATGCCTCTCCAGTCG
* * * * *
20870213 GCTGAGTGCTCGCACGTTCATTTTGTGGTTGGCCTAGGCATACAAAGATCATTCCATTTCTAAGC
388 GCTCAGTGCTCGAACGCTCATTTTGTGGTTGACCTAGGCATACAAAGATCATTCCATGTCTAAGC
* * *
20870278 CCTAGTCAGACGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGATAGCACCTAGAGA
453 CCGAGTCAGACGAGGGTTGCGGCAGCAGGACCGACAGCAGGATCGATAGCACCTAGAGA
* * *
20870337 GGGATCGAGAT-GATCCCCGGA-TTACGCATTATGCCTCTTCGGCTGGCC-TCTTCGATCGGTTA
1 GGGATCG-GGTCGATCCCC-GACTTGCGCATTATGCCTCTT----TGGCCAGC-T-GA---G---
* ** *
20870399 AACACCCGCACGCTCGTTTCATGGGTTGACTTAGGA-ATACGGAGTTCATCCCCAGTTTAAGCAT
52 --CACCCACACGCTCGTTTTGTGGGTTGACTTA-GACATACGGAGTTCATCCCCAGTCTAAGCAT
* * * * *
20870463 ACCAAGTTCATTCCCAGTGTAAGATCAGACCGGATCGAGGGTTGTAGCAGCAGGATCGACAGTAC
114 ACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGCAGCAGGATCGACAGCAC
* * * * * * * *
20870528 GTAAGAGGGATCGAGCTGAT-CTCCGACTTGCGCATTTTGCCTCTCCGGCCGATTGAGCACCCGA
179 GTAAGGGGGATCGGGCCGATCCT-CGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGC
* * *
20870592 ACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAACCGGATC
243 ACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATC
* * * *
20870657 GAGGGGTGTGGCAGCGGGACTGGTAGCACGCAGAGGGGGACTGGGC
308 GAGGGTTGTGGCAACGGGAC-GGCAGCACGCAGAGGGGGACCGGGC
20870703 CGATCCTCGG
Statistics
Matches: 711, Mismatches: 134, Indels: 53
0.79 0.15 0.06
Matches are distributed among these distances:
510 1 0.00
511 44 0.06
512 187 0.26
513 214 0.30
514 1 0.00
515 1 0.00
516 6 0.01
517 2 0.00
520 1 0.00
524 3 0.00
525 247 0.35
526 4 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (511 bp):
GGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTTGGCCAGCTGAGCACCCACACGCTCG
TTTTGTGGGTTGACTTAGACATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAG
TCTAAGATCAGACCAGATCGAGGGTTGCAGCAGCAGGATCGACAGCACGTAAGGGGGATCGGGCC
GATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCACGCCCATTTCATGGGTT
GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAACGGG
ACGGCAGCACGCAGAGGGGGACCGGGCAAATCCCTGGCCTGCGCATTATGCCTCTCCAGTCGGCT
CAGTGCTCGAACGCTCATTTTGTGGTTGACCTAGGCATACAAAGATCATTCCATGTCTAAGCCCG
AGTCAGACGAGGGTTGCGGCAGCAGGACCGACAGCAGGATCGATAGCACCTAGAGA
Found at i:20870243 original size:158 final size:157
Alignment explanation
Indices: 20870027--20870315 Score: 409
Period size: 159 Copynumber: 1.8 Consensus size: 157
20870017 GCCAATCCTC
* *
20870027 GGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAG
1 GGCTTGTGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCCCATTT-ATGGGTTGGCCTAG
*** *
20870092 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGAGGGTTCTGGAAGCAGGACCGACA
65 GCATACAAAGATCATTCCATGTCTAAGCCCCAGTCAGA-CGAGGGTTCTGGAAGCAGGACCGACA
20870157 GCACGCAGAAGGGGACCAAGCCGATCCCT
129 GCACGCAGAAGGGGACCAAGCCGATCCCT
* * * **
20870186 GGCTTGTGCATTCTGCCTCTCCAGTCGGCTGAGTGCTCGCACGTTCATTT-TGTGGTTGGCCTAG
1 GGCTTGTGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCCCATTTATG-GGTTGGCCTAG
* * * *
20870250 GCATACAAAGATCATTCCATTTCTAAGCCCTAGTCAGACGAGGGTTGTGGCAGCAGGACCGACAG
65 GCATACAAAGATCATTCCATGTCTAAGCCCCAGTCAGACGAGGGTTCTGGAAGCAGGACCGACAG
20870315 C
130 C
20870316 GGGATCGATA
Statistics
Matches: 114, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
157 28 0.25
158 42 0.37
159 44 0.39
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GGCTTGTGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCCCATTTATGGGTTGGCCTAGG
CATACAAAGATCATTCCATGTCTAAGCCCCAGTCAGACGAGGGTTCTGGAAGCAGGACCGACAGC
ACGCAGAAGGGGACCAAGCCGATCCCT
Found at i:20871647 original size:159 final size:159
Alignment explanation
Indices: 20871361--20871648 Score: 351
Period size: 159 Copynumber: 1.8 Consensus size: 159
20871351 AATCCTCGGT
* * * * *
20871361 TTGCGCATTCTACCTCTCTGACTAGCTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCA
1 TTGCGCATTCTACCTCTCCGACCAGCTGAACGCCCGCACGCCCGTTTCATGGGTTGGCCTAGGCA
* * ** * * * * * *
20871426 TAGGGAGTTCACTCCATGTCTAATCCCTAGCCATACTGAGGGTTATGGAAGCCGGACTGACAGCA
66 TACGAAAATCACTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGAAGCAGGACCGACAGCA
20871491 CGTAGAGGGGGACCGGGCTGATCCCCGAC
131 CGTAGAGGGGGACCGGGCTGATCCCCGAC
* * * * * *
20871520 TTGCGTATTCTACCTCTCCGGCCAGCTGAATGCCTGCACGCTCGTTTCGTGGGTTGGCCTAGGCA
1 TTGCGCATTCTACCTCTCCGACCAGCTGAACGCCCGCACGCCCGTTTCATGGGTTGGCCTAGGCA
* * * *
20871585 TACGAAAATCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGTAGGACCGACAGC
66 TACGAAAATCACTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGAAGCAGGACCGACAGC
20871649 GGGATCAATA
Statistics
Matches: 104, Mismatches: 25, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
159 104 1.00
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (159 bp):
TTGCGCATTCTACCTCTCCGACCAGCTGAACGCCCGCACGCCCGTTTCATGGGTTGGCCTAGGCA
TACGAAAATCACTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGAAGCAGGACCGACAGCA
CGTAGAGGGGGACCGGGCTGATCCCCGAC
Found at i:20871802 original size:26 final size:26
Alignment explanation
Indices: 20871763--20871818 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
20871753 TGGGTTGACT
20871763 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* *
20871789 TAAGCATACTGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
20871815 TAAG
1 TAAG
20871819 ATCAGATCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:20872152 original size:159 final size:156
Alignment explanation
Indices: 20871792--20872223 Score: 400
Period size: 159 Copynumber: 2.7 Consensus size: 156
20871782 CCCAGTCTAA
* *
20871792 GCATAC-TGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGTAGCAGGATCGAC
1 GCATACGT-AGTTCATTCCCAGTCTAAGATGA-ATC-GATCGAGGGTTACGGTAGCAGGATCGAT
* * * * * *
20871856 AGCACGTAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTTTGCTTCTCCGATCGGCTGAGCAC
63 AGCACGTAAGAGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAACAC
* * **
20871921 CCACACGCCCGTTTCATGGGTTGGCTTAG
128 CCAAACGCCCATTTCATGGGTTAACTTAG
* * * ** * * * *
20871950 GTATACGGAGTTTATT-CCATGTCTAAGCCGCAGTCGAATCGAGGGTTATGGCAGCAGGATTGAT
1 GCATACGTAGTTCATTCCCA-GTCTAAGATG-AATCG-ATCGAGGGTTACGGTAGCAGGATCGAT
* * * **
20872014 AGCACGTAAAGAGGGATTGGGCCGATCCTCGGCTTGTGCATTATGCCTCTCCGACCGGCTCAATG
63 AGCACGT-AAGAGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAACA
* *
20872079 CCCAAACGCTCATTTCGTGGGTTAACTTAG
127 CCCAAACGCCCATTTCATGGGTTAACTTAG
* * *
20872109 GCATACGTAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTTACGGTAGCAAGATCGATA
1 GCATACGTAGTTCATTCCCAGTCTAAGA-TGAATC-GATCGAGGGTTACGGTAGCAGGATCGATA
* * * * * * * * *
20872174 GCACGCAGGGGAGGATCGGGTCGGTCCTCGACTTGCGCATTCTACCTCTC
64 GCACGTAAGAG-GGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTC
20872224 TGGTCGGTTG
Statistics
Matches: 215, Mismatches: 50, Indels: 17
0.76 0.18 0.06
Matches are distributed among these distances:
157 4 0.02
158 54 0.25
159 152 0.71
160 5 0.02
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.24
Consensus pattern (156 bp):
GCATACGTAGTTCATTCCCAGTCTAAGATGAATCGATCGAGGGTTACGGTAGCAGGATCGATAGC
ACGTAAGAGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAACACCCA
AACGCCCATTTCATGGGTTAACTTAG
Found at i:20872301 original size:26 final size:26
Alignment explanation
Indices: 20872271--20872320 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
20872261 GGCTTAGGCA
20872271 TACGGAGTTCATT-CCATGTCTAAGCT
1 TACGGAGTTCATTCCCA-GTCTAAGCT
20872297 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
20872321 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:20873110 original size:26 final size:26
Alignment explanation
Indices: 20873080--20873132 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20873070 GTTGGCTTAG
*
20873080 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
20873106 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20873132 G
1 G
20873133 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20873319 original size:26 final size:26
Alignment explanation
Indices: 20873290--20873342 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20873280 GTTGACTTAG
20873290 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCC-GTCTAA
20873316 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCCGTCTAA
20873342 G
1 G
20873343 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCCGTCTAA
Found at i:20873670 original size:159 final size:150
Alignment explanation
Indices: 20873316--20873672 Score: 335
Period size: 159 Copynumber: 2.3 Consensus size: 150
20873306 CCCAGTCTAA
** * * *
20873316 GCATACGGAGTTCATTCCCCGTCTAAGATCAGATCGGACCGAGGGTT-TCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CAAGTCTAAGATCAGACCGGACCGAGGGTTGTCGGCAGCAGGACCGAC
* * *
20873380 AGCACGCAGGGGGGACTGGGCCGATCTCGGCTTACGCATTTTGCCTCTCCAGCCCACCCACACAC
65 AGCACGCAGGGGGGACTGGGCCGATCCCAGCTTACGCATTATGCCTCTCCAGCCCACCCACACAC
* *
20873445 CCGTTTCGTGGGTTGGCTCAG
130 CCATTTCGTGGGTTGACTCAG
* * * ** * *
20873466 CCATAGGGAGTTCATTCAATGTCTAAGCTCCA-ACCGGACAAAGGGTTGT-GGCAGCGGGACCGG
1 GCATACGGAGTTCATTCAA-GTCTAAGAT-CAGACCGGACCGAGGGTTGTCGGCAGCAGGACCGA
* *
20873529 CAGCCCGCAGAGGGGGA-TCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACTGGCTCAG
64 CAGCACGCAG-GGGGGACT-GGGCCGAT-CCCAGCTTACGCATTATGCCTCTCC-A---GC-C--
* * *
20873593 CACCCGCACACTCATTTCGTGGGTTGACTTAG
119 CACCCACACACCCATTTCGTGGGTTGACTCAG
* * *
20873625 GCATACGGAGTTCATTCTTAGTCTAAGATCGGACCAGACCGAGGGTTG
1 GCATACGGAGTTCATTC-AAGTCTAAGATCAGACCGGACCGAGGGTTG
20873673 CGATAGCAGA
Statistics
Matches: 162, Mismatches: 30, Indels: 21
0.76 0.14 0.10
Matches are distributed among these distances:
149 1 0.01
150 54 0.33
151 17 0.10
152 21 0.13
153 1 0.01
156 2 0.01
157 1 0.01
158 1 0.01
159 63 0.39
160 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.21
Consensus pattern (150 bp):
GCATACGGAGTTCATTCAAGTCTAAGATCAGACCGGACCGAGGGTTGTCGGCAGCAGGACCGACA
GCACGCAGGGGGGACTGGGCCGATCCCAGCTTACGCATTATGCCTCTCCAGCCCACCCACACACC
CATTTCGTGGGTTGACTCAG
Found at i:20873812 original size:26 final size:26
Alignment explanation
Indices: 20873783--20873835 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20873773 GTTGGCTTAG
20873783 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCACA-GTCTAA
20873809 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
20873835 G
1 G
20873836 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:20874693 original size:26 final size:26
Alignment explanation
Indices: 20874663--20874715 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20874653 GTTGGCTTAG
20874663 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20874689 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20874715 G
1 G
20874716 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20874911 original size:26 final size:26
Alignment explanation
Indices: 20874875--20874925 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20874865 TGACTTAGGT
*
20874875 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGAAGTTCATCCCCAGTCTAAGC
* *
20874901 ATACGAAGTTCATTCCTAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
20874926 ATCTAACTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGC
Found at i:20875827 original size:26 final size:26
Alignment explanation
Indices: 20875778--20875830 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20875768 GTTGACTTAG
*
20875778 GCATACGGAGTTCATCCCTGGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
20875804 GCATATGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCA-TCCCTAGTCTAA
20875830 G
1 G
20875831 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:20876284 original size:155 final size:154
Alignment explanation
Indices: 20875804--20876293 Score: 459
Period size: 159 Copynumber: 3.1 Consensus size: 154
20875794 CCTGGTCTAA
* * * *
20875804 GCATATGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCGAGGGTTGCGGTAGGAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACTGAGGGTTGCGGTAGCAGGATCGAC
* * * * *
20875868 AGCACTTATGAGGGATCGGATTGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCC-AGCTGAGCG
65 AGCAC--A-GGGGGATAGG-TCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGA-CTGAGCG
* *
20875932 CCCGTACGCCCGTTTCGTGGGTTGGCTTAG
125 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * **
20875962 GCATAGGGAGTTTATT-CCATGTCTAAGCCCCAG-TCGGA-TCGAAGGTTGTGGCAGTGGGATCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACT-GAGGGTTGCGGTAGCAGGATCG
** * * * * *
20876024 ACAGCACACAGAGAGGGACCGGGCCGATCCTCGGCTTGTGCATTATGCCTCTCCGGCTGACTCAA
63 ACAG--CACAG-G-GGGA-TAGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAG
* * * *
20876089 CGCCCACGCGCTCGTTTCATGGGTTGACTTAG
123 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
20876121 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCGACA
* * * * * * *
20876186 GCACAGGGGGATTAGGTCGGTCCCCAGCTTGCGTATTTTGCCTCTCCGACCGACTGAGCGCCTGC
66 GCACAGGGGGA-TAGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGCGCCCGC
20876251 ACGCTCGTTTCGTGGGTTGGCTTAG
130 ACGCTCGTTTCGTGGGTTGGCTTAG
20876276 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
20876294 ATGTCCAAGC
Statistics
Matches: 262, Mismatches: 57, Indels: 29
0.75 0.16 0.08
Matches are distributed among these distances:
155 82 0.31
156 1 0.00
157 9 0.03
158 48 0.18
159 112 0.43
160 10 0.04
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.25
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCGACA
GCACAGGGGGATAGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20876881 original size:26 final size:26
Alignment explanation
Indices: 20876851--20876903 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20876841 GTTGGCTTAG
20876851 GCATACGGAGTTC-GTTCCATGTCTAA
1 GCATACGGAGTTCAGTTCCA-GTCTAA
*
20876877 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCAGTTCCAGTCTAA
20876903 G
1 G
20876904 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCAGTTCCAGTCTAA
Found at i:20883772 original size:159 final size:160
Alignment explanation
Indices: 20883558--20883974 Score: 475
Period size: 159 Copynumber: 2.6 Consensus size: 160
20883548 GACCGAGCCA
* * ** * *
20883558 ATCCCCGGCTTGCGCATTCTGCCTCTCCAACCGGCTGAGCGCCCGTGCGCCCGTTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * * *
20883623 GCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAG-CCGGA-TCGAGGGTTGTGGCAGCGG
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACT-GAGGGTTGTGGCAGCAG
**
20883686 GACCGGCAGCACACAGAGAGGGACCGGACCG
130 GACCAACAGCACACAGAGAGGGACCGGACCG
* * * * *
20883717 ATCCCTGGCTTGCGCATTATGCCTCTCCGACTAGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * * *
20883782 ACTTAGGCGTACGGAGTTCATTCCCA-ATCTAAG-ATCAGACCAGACTGAGGGTTGTGGTAGCAG
66 GCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACTGAGGGTTGTGGCAGCAG
* * * * * **
20883845 GATCAACAGCACGCAGGGGGGGATCGGGTCG
130 GACCAACAGCACACAGAGAGGGACCGGACCG
* * * *
20883876 ATCCCCGACTTGCGCATTCTGCCTCTTCGGCCAGCTGAGCGCCCGCACGCTCATTTCGT-GGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
20883940 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
20883975 TACGGAGTTC
Statistics
Matches: 211, Mismatches: 42, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
157 3 0.01
158 34 0.16
159 170 0.81
160 4 0.02
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (160 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGGTTGTGGCAGCAGG
ACCAACAGCACACAGAGAGGGACCGGACCG
Found at i:20885466 original size:159 final size:157
Alignment explanation
Indices: 20885082--20885811 Score: 474
Period size: 158 Copynumber: 4.5 Consensus size: 157
20885072 CCGGCTTACG
* ** * ** * *
20885082 CATTATGCCTCTCTGACCGGTTGAGCACCCGCATGCTTATTTCATGGGTTGACTTAGGCGTATA-
1 CATTATGCCTCTCTGACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC--ATAC
** * * * * * *
20885146 GAGTTCATTCCCA-GTCTAAG-ATCGGACTGGACCGAGGGTTGTGGTAGCAGGATCGGTAGCACA
64 GAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACG
** * * * * * * *
20885209 CAG-GGGGATCGGGCAGGT-CTCCGGCTTACG
127 CAGAAAGGACCGAGCCGATCCT-CGACTTGCA
* ** * *
20885239 CATTCTGCCTCTCCTG-GTGGCTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
1 CATTATGCCTCT-CTGACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-C
* * * * *
20885303 GAGTTGATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCGGGACCGACAGCACGCA
64 GAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCA
* * *
20885368 GAAAATGACCGAGCCGAT-CTCTGGCTTGCG
129 G-AAAGGACCGAGCCGATCCTC-GACTTGCA
* * * * * * * *
20885398 CATTATGCCT-TTTCGATCGGCTTAGTGACCGCACGCTTGTTTCGTGGGTTGACTTATGCAAACA
1 CATTATGCCTCTCT-GACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-
* * * * *
20885462 GAGTTCATTCCCA-GTCTAAGATCACA-CCGGACCGAAGGTTGTGGCAGCAAGATCGGCAGCACG
64 GAGTTCATT-CCATGTCTAAG-CCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACG
* ** * **
20885525 TAGAGGGGACCGGGTTGATCCTCGACTTGCA
127 CAGAAAGGACCGAGCCGATCCTCGACTTGCA
* * * *
20885556 CATTCTGCCTCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGA
1 CATTATGCCTCTCTGACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG-
*
20885621 AGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAGGACCGGCAGCGGGATC
65 AGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGC---A-C
* * *
20885686 GACAGCACGTAGAGGGGGACCGAGCTGATCCTCGGCTTGCG
126 G-CAG-A---A-A---GGACCGAGCCGATCCTCGACTTGCA
* * * * * *
20885727 CATTATGCCTTTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTCGGCATACGG
1 CATTATGCCTCTCTGACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-G
*
20885792 AGTTCA-TCCCTAGTCTAAGC
65 AGTTCATTCCAT-GTCTAAGC
20885812 TTACGAAGTT
Statistics
Matches: 444, Mismatches: 96, Indels: 52
0.75 0.16 0.09
Matches are distributed among these distances:
155 3 0.01
156 3 0.01
157 97 0.22
158 117 0.26
159 115 0.26
160 6 0.01
161 1 0.00
162 2 0.00
163 2 0.00
164 1 0.00
170 4 0.01
171 92 0.21
172 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
CATTATGCCTCTCTGACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGA
GTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGA
AAGGACCGAGCCGATCCTCGACTTGCA
Found at i:20886343 original size:158 final size:159
Alignment explanation
Indices: 20885845--20886345 Score: 401
Period size: 158 Copynumber: 3.2 Consensus size: 159
20885835 AGATTGGACT
* ** * * * * * *
20885845 GGACCGAGGGTTACGGCAGCAAGATCG-GCAGCATGCA-AGGGGGATCGGGCCGATCCCCGGCTT
1 GGACCGAGAGTTGTGGCAGCAGGATCGAGCAGCACGCAGA-GGGGACCGGGCCAATCCTCAGCTT
* * * * * ** * * * *
20885908 GCGCATTTTGCCTC-TCCAACCGACTGAGTTCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCAT
65 GCGCATTATGCCTCTTCGATCAG-CTCAGCGCCCGCACGCTCGATTCGTGGGTTGGCTTAGGCAT
*
20885972 -CGGGAGTTCATTCCATGTCTAAGCCCCAACC
129 AC-GGAGTTCATTCCATGTCTAAGCCGCAACC
* * *
20886003 GGACCGAGAGTTGTGGTAGCGGGA-CCAGCAGCACGCAGAGGGGACCGGGCCAATCCTCAGCTTG
1 GGACCGAGAGTTGTGGCAGCAGGATCGAGCAGCACGCAGAGGGGACCGGGCCAATCCTCAGCTTG
* * * * * * * *
20886067 TGCATTATGCCTCTTCGATCGGCTCAGTGCCCGCACGCTTGTTTTGTGGGTTGACTTATGCATAC
66 CGCATTATGCCTCTTCGATCAGCTCAGCGCCCGCACGCTCGATTCGTGGGTTGGCTTAGGCATAC
*
20886132 GGAGTTCATTTCCA-GTCTAAGATCCG--ATC
131 GGAGTTCA-TTCCATGTCTAAG--CCGCAACC
* ** * * * * * * * *
20886161 AGACCGATTGTTGCGACAGTAGGATCGA-CAGCACGCAGGGGGGACTGGTCCGATCC-CTGACTT
1 GGACCGAGAGTTGTGGCAGCAGGATCGAGCAGCACGCAGAGGGGACCGGGCCAATCCTCAG-CTT
* * * * * *
20886224 GCGCATTTTGCCTTTTCGGTCAGCTGAGCGCTCGCGCGCTCGATTCGTGGGTTGGCTTAGGCATA
65 GCGCATTATGCCTCTTCGATCAGCTCAGCGCCCGCACGCTCGATTCGTGGGTTGGCTTAGGCATA
20886289 CGGAGTTCATTCCATGTCTAAGCCGCAACC
130 CGGAGTTCATTCCATGTCTAAGCCGCAACC
* *
20886319 GGACTGAGGGTTGTGGCAGCAGGATCG
1 GGACCGAGAGTTGTGGCAGCAGGATCG
20886346 GCAACGGGAT
Statistics
Matches: 267, Mismatches: 64, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
156 3 0.01
157 8 0.03
158 240 0.90
159 14 0.05
160 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
GGACCGAGAGTTGTGGCAGCAGGATCGAGCAGCACGCAGAGGGGACCGGGCCAATCCTCAGCTTG
CGCATTATGCCTCTTCGATCAGCTCAGCGCCCGCACGCTCGATTCGTGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCCGCAACC
Found at i:20886439 original size:671 final size:669
Alignment explanation
Indices: 20885147--20887059 Score: 2154
Period size: 671 Copynumber: 2.8 Consensus size: 669
20885137 AGGCGTATAG
* *
20885147 AGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGTAGCAGGATCGGTAGCA-CACA
1 AGTTCATTCTCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCAGGATCGGTAGCAGCA-A
* * * * ** *
20885211 GGGGGATCGGGCAGGTCTCCGGCTTACGCATTCTGCCTCTCCTGGTGGCTGAGTGCCCGCACGCC
65 GGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGTACCCGCACGCC
* * * *
20885276 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTGATTCCATGTCTAAGCCCCAGCCAGACTGAGGG
130 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
*** * *
20885341 TTGTGGCAGCGGGACCGACAGCACGCAGAAAATGACCGAGCCGAT-CTCTGGCTTGCGCATTATG
195 TTGTGGCAGCGGGACCGACAGCACGCAG-AGGGGACCGGGCCGATCCTC-AGCTTGCGCATTATG
* * * *
20885405 CCTTTTCGATCGGCTTAGTGACCGCACGCTTGTTTCGTGGGTTGACTTATGCAAACAGAGTTCAT
258 CCTCTTCGATCGGCTCAGTGACCGCACGCTTGTTTCGTGGGTTGACTTATGCATACGGAGTTCAT
* * * * * * *
20885470 TCCCAGTCTAAGATCAC-ACCGGACCGAAGGTTGTGGCAGCAAGATCGGCAGCACGTAGAGGGGA
323 TCCCAGTCTAAGATC-CGATCAGACCGAAGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGA
* * * * *
20885534 CCGGGT-TGAT-CCTCGACTTGCACATTCTGCCTCTCTGGCCAGCTGAGCGCCCGCACGCTCGTT
387 -CTGGTCCGATCCCT-GACTTGCACATTTTGCCTCTC-GGTCAGCTGAGCGCCCGCACGCTCGAT
* *
20885597 TCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGT
449 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGCCGGACCGAGGGTTGT
* * * *
20885662 GGCAGCAGGACCGGCAGCGGGATCGACAGCACGTAGAGGGGGACCGAGCTGATCCTCGGCTTGCG
513 GGCAGCAGGACCGGCAGCGGGATCGACAGCATGCAGAGGGGGACCGAGCTGATCCTCGACTTACG
* *
20885727 CATTATGCCTTTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTCGGCATACGG
578 CATTATGCCTTTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGG
*
20885792 AGTTCATCCCTAGTCTAAGCTTAC-GA
643 AGTTCATCCCTAGTCTAAGCATACGGA
* * * * *
20885818 AGTTCATTCTCAGTCTAAGATTGGACTGGACCGAGGGTTACGGCAGCAAGATCGGCAGCATGCAA
1 AGTTCATTCTCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCAGGATCGGTAGCA-GCAA
* * * * * *
20885883 GGGGGATCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCAACCGACTGAGTTCCTGCACGCC
65 GGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGTACCCGCACGCC
* * *
20885948 CGTTTCATGGGTTGGCTTAGGCATCGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGAG
130 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
* * *
20886013 TTGTGGTAGCGGGACC-AGCAGCACGCAGAGGGGACCGGGCCAATCCTCAGCTTGTGCATTATGC
195 TTGTGGCAGCGGGACCGA-CAGCACGCAGAGGGGACCGGGCCGATCCTCAGCTTGCGCATTATGC
* *
20886077 CTCTTCGATCGGCTCAGTGCCCGCACGCTTGTTTTGTGGGTTGACTTATGCATACGGAGTTCATT
259 CTCTTCGATCGGCTCAGTGACCGCACGCTTGTTTCGTGGGTTGACTTATGCATACGGAGTTCATT
* ** * *
20886142 TCCAGTCTAAGATCCGATCAGACCGATTGTTGCGACAGTAGGATCGACAGCACGCAGGGGGGACT
324 CCCAGTCTAAGATCCGATCAGACCGAAGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGACT
* * * *
20886207 GGTCCGATCCCTGACTTGCGCATTTTGCCTTTTCGGTCAGCTGAGCGCTCGCGCGCTCGATTCGT
389 GGTCCGATCCCTGACTTGCACATTTTGCC-TCTCGGTCAGCTGAGCGCCCGCACGCTCGATTCGT
* *
20886272 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCGCAACCGGACTGAGGGTTGTGGCA
453 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC-CAGCCGGACCGAGGGTTGTGGCA
* * * *
20886337 GCAGGATCGGCAACGGGATCGACAGCATGCAGAGGGGGACC-AGGTTGATCC-CTGACTTATGCA
517 GCAGGACCGGCAGCGGGATCGACAGCATGCAGAGGGGGACCGA-GCTGATCCTC-GACTTACGCA
* ** * *
20886400 TTATGCCTCTTC-GGCCGGTTGAGCGCTTGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGA
580 TTATGCCT-TTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGA
20886464 GTTCATCCCTAGTCTAAGCATACGGA
644 GTTCATCCCTAGTCTAAGCATACGGA
* * * * * * *
20886490 A-TTCATTCGT-AATCTAAGATCAGACCGGATCGAGGGTTGCGTTAGTAGGATTGGTAGCACGC-
1 AGTTCATTC-TCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCAGGATCGGTAGCA-GCA
* *** * * * *
20886552 A-GGGGATACCGGGCCGATCCTCAATTTACGCATTCTGCCCCTCCAGTCGGCTAAGCACCCGCAC
64 AGGGGGAT--CGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGTACCCGCAC
* * * ** *
20886616 ACCCGTTTCATGCGTTGGCTTAGGGATAGGGAGTTCATTCCATGTCTAAGTGCCAGCCGGATCGA
127 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGA
* * * * * * *
20886681 GGGTTGTGGCAGTGCGACTGACAGTACGTAGAGGGGGACTGGGCCGATCCCCAGCTTGCGCATTA
192 GGGTTGTGGCAGCGGGACCGACAGCACGCAGA-GGGGACCGGGCCGATCCTCAGCTTGCGCATTA
* ** ** * * *
20886746 TGCCTCTTCG-GCTGGCTCAACGTTCGAACACTCGTTTCGTGGGTTGACTTATGCATACGGAGTT
256 TGCCTCTTCGATC-GGCTCAGTGACCGCACGCTTGTTTCGTGGGTTGACTTATGCATACGGAGTT
* * * * * * * *
20886810 CATTGCTAGTCTAAGATCAGATCCGATC-AAGGGTTATGGCAGTAGGATCTACAGCACGCAGGAG
320 CATTCCCAGTCTAAGATCCGATCAGACCGAA-GGTTGTGGCAGTAGGATCGACAGCACGCAGGGG
* * * * ** * * * *
20886874 GGA-TCGGGCCGATCCCCGACATGCACATTTTACCTCTCCATCCGATTTA-CTACCCGCACGCTC
384 GGACT-GGTCCGATCCCTGACTTGCACATTTTGCCTCTCGGTCAG-CTGAGC-GCCCGCACGCTC
* *
20886937 -ATTTCGTGGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGGCCGAACCGAGGG
446 GA-TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCA-GCCGGACCGAGGG
* * * * * *
20887001 TTGTGGTAGTAGGACCGGTAGCGGGATTGACAGCATGCAGAGGGGGATCGGGCTGATCC
509 TTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCATGCAGAGGGGGACCGAGCTGATCC
20887060 CCGGCTGCCT
Statistics
Matches: 1041, Mismatches: 175, Indels: 51
0.82 0.14 0.04
Matches are distributed among these distances:
669 6 0.01
670 10 0.01
671 596 0.57
672 427 0.41
673 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (669 bp):
AGTTCATTCTCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCAGGATCGGTAGCAGCAAG
GGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGTACCCGCACGCCC
GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGT
TGTGGCAGCGGGACCGACAGCACGCAGAGGGGACCGGGCCGATCCTCAGCTTGCGCATTATGCCT
CTTCGATCGGCTCAGTGACCGCACGCTTGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC
CAGTCTAAGATCCGATCAGACCGAAGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGACTGG
TCCGATCCCTGACTTGCACATTTTGCCTCTCGGTCAGCTGAGCGCCCGCACGCTCGATTCGTGGG
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGCCGGACCGAGGGTTGTGGCAGCAG
GACCGGCAGCGGGATCGACAGCATGCAGAGGGGGACCGAGCTGATCCTCGACTTACGCATTATGC
CTTTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATC
CCTAGTCTAAGCATACGGA
Found at i:20886505 original size:26 final size:26
Alignment explanation
Indices: 20886455--20886507 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20886445 GTTGACTTAG
* *
20886455 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAATTCATCCCTAATCTAA
* *
20886481 GCATACGGAATTCATTCGTAATCTAA
1 GCATACGGAATTCATCCCTAATCTAA
20886507 G
1 G
20886508 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATCCCTAATCTAA
Found at i:20887613 original size:26 final size:26
Alignment explanation
Indices: 20887562--20887613 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20887552 GTTGGCTTAG
* *
20887562 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGCCTAA
20887588 GCATACAGAGTTCATTCCCA-GCCTAA
1 GCATACAGAGTTCATT-CCATGCCTAA
20887614 TATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGCCTAA
Found at i:20888315 original size:26 final size:26
Alignment explanation
Indices: 20888285--20888337 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20888275 GTTGACTTGG
20888285 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
20888311 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20888337 G
1 G
20888338 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20888785 original size:158 final size:155
Alignment explanation
Indices: 20888311--20888812 Score: 480
Period size: 158 Copynumber: 3.2 Consensus size: 155
20888301 CCCAGTCTAA
* * *
20888311 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCAG-CGGA-GATCGAT
* * * ** * *
20888375 AGCACGCA-AGAGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCA
63 AGCACGCAGAG-GGGA-CGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTAGGCTGAGCG
* *
20888439 CCCGCATGC-CTATTTCGTTGGTTGGCTTAG
126 CCCGCACGCTC-ATTTCGTAGGTTGGCTTAG
* ** * * * *
20888469 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGTAGCGG-GATCGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGG-T-T-GCAGCGGAGATCGA
* * * * *
20888532 CAGCACGTAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCA-GCTCGA
62 TAGCACGCAGA-GGGGACGA-GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGT-AGGCT-GA
* * *
20888596 -TGCCCGCACGCTCATTTTGTAGGTTGACTTAG
123 GCGCCCGCACGCTCATTTCGTAGGTTGGCTTAG
* *
20888628 GCAGACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGTGGGTTGCAGCGGTAAGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCAGCGG--AGATCGAT
* *
20888692 AGCACGCAGAGGGGATCGAGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCTGGTAGGCTGAGCGC
63 AGCACGCAGAGGGGA-CGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTAGGCTGAGCGC
* * *
20888757 CCGCACGCTCGTTTCATGGGTTGGCTTAG
127 CCGCACGCTCATTTCGTAGGTTGGCTTAG
20888786 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
20888813 CATACAGAGT
Statistics
Matches: 274, Mismatches: 50, Indels: 40
0.75 0.14 0.11
Matches are distributed among these distances:
156 6 0.02
157 10 0.04
158 135 0.49
159 111 0.41
160 9 0.03
161 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCAGCGGAGATCGATAGC
ACGCAGAGGGGACGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTAGGCTGAGCGCCCGC
ACGCTCATTTCGTAGGTTGGCTTAG
Found at i:20888816 original size:26 final size:26
Alignment explanation
Indices: 20888786--20888838 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20888776 GTTGGCTTAG
*
20888786 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
20888812 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20888838 G
1 G
20888839 ATAGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20889210 original size:157 final size:158
Alignment explanation
Indices: 20888963--20889259 Score: 361
Period size: 157 Copynumber: 1.9 Consensus size: 158
20888953 CTCGCACACT
* * *
20888963 CGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATCTCTAAACCCCAGCCGAACTGAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATCTCTAAACCCAAGCCGAACCGAGGG
* ** * * * * *
20889028 TTGTGGCAGCAGGATTGACATCACGC-AGGGGGACCTAGCCGATCC-CTGGCTTGCGCATTCTAC
66 TTGTGGCAACAGGACAGACAGCACGCAAGGGGGACCGAGCCGATCCTC-AGCTCGCGCATTATAC
20889091 CTCTCCGACTGGCTGAACGCCTACACGCC
130 CTCTCCGACTGGCTGAACGCCTACACGCC
* *
20889120 CGTTTCGTGGGTTGGCTTAGGCATA-GAGAGTTCATTCCATGTCTAAGCCCAAGCC-AGACCGAG
1 CGTTTCGTGGGTTGGCTTAGGCATACG-GAGTTCATTCCATCTCTAAACCCAAGCCGA-ACCGAG
* * *
20889183 GGTTGTGGCAACGGGGCCAG-CAGCACGCAGAGGGGGACCGGGCCGATCCTCAGCTCGCGCATTA
64 GGTTGTGGCAAC-AGGACAGACAGCACGCA-AGGGGGACCGAGCCGATCCTCAGCTCGCGCATTA
*
20889247 TGCCTCTCCGACT
127 TACCTCTCCGACT
20889260 TGTGCCTCAA
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
156 2 0.02
157 72 0.62
158 3 0.03
159 39 0.33
160 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATCTCTAAACCCAAGCCGAACCGAGGG
TTGTGGCAACAGGACAGACAGCACGCAAGGGGGACCGAGCCGATCCTCAGCTCGCGCATTATACC
TCTCCGACTGGCTGAACGCCTACACGCC
Found at i:20889525 original size:26 final size:26
Alignment explanation
Indices: 20889475--20889527 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20889465 GTTGGCTTAG
* *
20889475 GCATACGGAGTTCATTCCGTGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
20889501 GCATACGAAGTTCATTCCCAT-TCTAA
1 GCATACGAAGTTCATT-CCATGTCTAA
20889527 G
1 G
20889528 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:20889721 original size:689 final size:671
Alignment explanation
Indices: 20888311--20889738 Score: 1574
Period size: 689 Copynumber: 2.1 Consensus size: 671
20888301 CCCAGTCTAA
** ** * *
20888311 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGAT
1 GCATACAGAGTTCATT-CCATGTCTAAGCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
20888375 AGCACGCAAGAGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCAC
64 AGCACGCAAGAGGGACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGACTGAACAC
* * * * * *
20888440 CCGCATGCCTATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
129 CCACACGCCCATTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCAAGCCA
* * * * * * * *
20888505 GACTGAGGGTTGTGGTAGCGGGATCGGCAGCACGTAGAGGGGGACCAGGCCGATCCCCGGCTTGC
194 GACCGAGGGTTGTGGCAACGGGACCAGCAGCACGCAGAGGGGGACCAGGCCGATCCCCAGCTCGC
* * **
20888570 GCATTATGCCTCTCCGATCAGCTCGATGCCCGCACGCTCATTTTGTAGGTTGACTTAGGCAGACG
259 GCATTATGCCTCTCCGATCAGCTCCACGCCCGCACGCTCATTTCATAGGTTGACTTAGGCAGACG
* ** * ***
20888635 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGTGGGTTGCAGCGGTAAGATCGATAGCACGCA
324 GAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAAGGTTACAGCAACAAGATCGATAGCACGCA
* * * *
20888700 GAGGGGATCGAGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCTGGTAGGCTGAGCGCCCGCACGC
389 GAGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATAGGCTGAGAGCCCGCACGC
*
20888765 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCC
454 TCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCC
* * *
20888830 CAGTCTAAGATAGGACCGAACTGAGGGTTACGACAGTAGGACCAGTAGCAGGATCGACAGCACGA
519 CAGTCTAAGATAGAACCGAACTGAGGGTTACGACAGCAGGACCAGCAGCAGGATCGACAGCACGA
* * * * *
20888895 AGAGGGGGACTGGATCGATCCCCGATTTGCGCACTCTACCTCTCCGGCCGACTGAGCGCTCGCAC
584 AGAGGGGGACTGAACCGATCCCCGACTTACGCACTCTACCTCTCCGGCCGACTGAGCGCCCGCAC
* **
20888960 ACTCGTTTTGTGGGTTGGCTTAG
649 ACTCATTTCATGGGTTGGCTTAG
* * * * * *
20888983 GCATACGGAGTTCATTCCATCTCTAAACCCCAGCCGAACTGAGGGTTGTGGCAGCAGGATTGACA
1 GCATACAGAGTTCATTCCATGTCT-AAGCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * * *
20889048 TCACGC-AGGGGGACCTAGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGACTGGCTGAACGCC
65 GCACGCAAGAGGGACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGACTGAACACC
* *
20889112 TACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCAAGCCAG
130 CACACGCCCATTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCAAGCCAG
* * *
20889177 ACCGAGGGTTGTGGCAACGGGGCCAGCAGCACGCAGAGGGGGACCGGGCCGATCCTCAGCTCGCG
195 ACCGAGGGTTGTGGCAACGGGACCAGCAGCACGCAGAGGGGGACCAGGCCGATCCCCAGCTCGCG
*
20889242 CATTATGCCTCTCCGACTTGTGCCTCAATGCATTATGCCTCAGCGCCCGCACGCTCATTTCATGG
260 CATTATGCCTCTCCGA--------TC-A-GC----T--C-CA-CGCCCGCACGCTCATTTCATAG
* * * * **
20889307 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAATGAAGGTTATGGCAAC
307 GTTGACTTAGGCAGACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAAGGTTACAGCAAC
* * * * * * *
20889372 ATGATTGATAGCACGCAGGGGGGATCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGATCG
372 AAGATCGATAGCACGCAGAGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATAG
* * * * *
20889437 GTTGAGAGCCTGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCGTGTCTAAG
437 GCTGAGAGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * ** *
20889502 CATAC-GAAGTTCATTCCCATTCTAAGATCGAACC-AGCTCGAGGGTTAC-AGTGGCAGGACTAG
502 CATACAG-AGTTCATTCCCAGTCTAAGATAGAACCGAACT-GAGGGTTACGA-CAGCAGGACCAG
* * * * * * * *
20889564 CAGCAGGATCTG-CAGCACGCAGGGGGGGA-TCGAACCTATCCCCGGCTTATGTATTCTGCCTCT
564 CAGCAGGATC-GACAGCACGAAGAGGGGGACT-GAACCGATCCCCGACTTACGCACTCTACCTCT
** * * *
20889627 CCGGTTGGCTGAGTGCCCGCACATTCATTTCATGGGTTGGCTTAG
627 CCGGCCGACTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAG
*
20889672 GCATACAGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAAGGTTGTGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCATGTCTAAGCCC-AGCCGGACCGAGGGTTGTGGCAGCAGGATCGACA
20889737 GC
65 GC
20889739 GGGATCGACA
Statistics
Matches: 613, Mismatches: 117, Indels: 35
0.80 0.15 0.05
Matches are distributed among these distances:
671 176 0.29
672 48 0.08
673 5 0.01
679 2 0.00
680 1 0.00
681 2 0.00
685 1 0.00
687 1 0.00
688 12 0.02
689 364 0.59
690 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (671 bp):
GCATACAGAGTTCATTCCATGTCTAAGCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGCAAGAGGGACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGACTGAACACCC
ACACGCCCATTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCAAGCCAGA
CCGAGGGTTGTGGCAACGGGACCAGCAGCACGCAGAGGGGGACCAGGCCGATCCCCAGCTCGCGC
ATTATGCCTCTCCGATCAGCTCCACGCCCGCACGCTCATTTCATAGGTTGACTTAGGCAGACGGA
GTTCATTCCCAGTCTAAGATCAGACCGGAACGAAGGTTACAGCAACAAGATCGATAGCACGCAGA
GGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATAGGCTGAGAGCCCGCACGCTC
ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCA
GTCTAAGATAGAACCGAACTGAGGGTTACGACAGCAGGACCAGCAGCAGGATCGACAGCACGAAG
AGGGGGACTGAACCGATCCCCGACTTACGCACTCTACCTCTCCGGCCGACTGAGCGCCCGCACAC
TCATTTCATGGGTTGGCTTAG
Found at i:20890548 original size:26 final size:26
Alignment explanation
Indices: 20890512--20890563 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20890502 TTGGCTTAGA
20890512 CATACGGAGTTCA-TTCCATGTCTAAG
1 CATACGGAGTTCATTTCCA-GTCTAAG
*
20890538 CATATGGAGTTCATTTCCAGTCTAAG
1 CATACGGAGTTCATTTCCAGTCTAAG
20890564 ACCGGATCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTTCCAGTCTAAG
Found at i:20890921 original size:26 final size:25
Alignment explanation
Indices: 20890886--20890937 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
20890876 TTTGACTTAG
20890886 GCATCGGAGTTCATCCCCAGTCTAA
1 GCATCGGAGTTCATCCCCAGTCTAA
20890911 GCATACGGAGTTCATCCCCAGTCTAA
1 GCAT-CGGAGTTCATCCCCAGTCTAA
20890937 G
1 G
20890938 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 4 0.15
26 22 0.85
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (25 bp):
GCATCGGAGTTCATCCCCAGTCTAA
Found at i:20893036 original size:25 final size:25
Alignment explanation
Indices: 20893008--20893075 Score: 118
Period size: 25 Copynumber: 2.7 Consensus size: 25
20892998 GTTGGCTTAG
20893008 GCATACGGAGTTCATTCCATGTCAA
1 GCATACGGAGTTCATTCCATGTCAA
20893033 GCATACGGAGTTCATTCCATGTCAA
1 GCATACGGAGTTCATTCCATGTCAA
* *
20893058 GCATATGGAGATCATTCC
1 GCATACGGAGTTCATTCC
20893076 CAGTCTAAGA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCATGTCAA
Found at i:20894244 original size:159 final size:159
Alignment explanation
Indices: 20893779--20894269 Score: 467
Period size: 158 Copynumber: 3.1 Consensus size: 159
20893769 CCCAGTCTAA
* * *
20893779 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * * *
20893844 ACACGCAAG-GGGGACCAGACTGAT-CCCCGATTTGTGCATTTTGCTTCTCCGGTCGACTGAGCA
66 GCACGCAAGAGGGGACCGGGCTGATCCCCCG-CTTATGCATTATGCCTCTCCGGTCGGCTGAGCG
* * *
20893907 CCCGCACTCCCATTTCGTGGGTTGGCTTAG
130 CCAGCACGCTCATTTCGTGGGTTGGCTTAG
** * ** * * * *
20893937 GCATAGGGTGTTCATT-CCATGTCTAAGCCCTAG-CCAGACCGAGGGTTGGGGTAGCAGCA-CGA
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATTAGATCAGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * *
20893999 TAGCATGC-AGAGGGGGATCGGGCTGATCCCCGGCTTATGCATTATGCCTCTCCAG-CTGGCTCA
64 CAGCACGCAAGA-GGGGACCGGGCTGATCCCCCGCTTATGCATTATGCCTCTCCGGTC-GGCTGA
* * * **
20894062 GCGCCTGCACGCTCATTCCGTGGGATGAATTAG
127 GCGCCAGCACGCTCATTTCGTGGGTTGGCTTAG
* * * *
20894095 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTACGACAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
20894160 GCACGCAAGAAGGGACCGGGCCGATCCCCCGCTTATGCATTCTACCTCTCCGGTCGGCTGA-CTG
66 GCACGCAAGAGGGGACCGGGCTGATCCCCCGCTTATGCATTATGCCTCTCCGGTCGGCTGAGC-G
* *
20894224 CCAGCACGCTCGTTTTGTGGGTTGGCTTAG
130 CCAGCACGCTCATTTCGTGGGTTGGCTTAG
20894254 GCATACAGAGTTCATT
1 GCATACAGAGTTCATT
20894270 ACATATCTAA
Statistics
Matches: 258, Mismatches: 63, Indels: 23
0.75 0.18 0.07
Matches are distributed among these distances:
156 2 0.01
157 14 0.05
158 140 0.54
159 98 0.38
160 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAAGAGGGGACCGGGCTGATCCCCCGCTTATGCATTATGCCTCTCCGGTCGGCTGAGCGC
CAGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:20894492 original size:26 final size:26
Alignment explanation
Indices: 20894463--20894515 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20894453 GTTGACTTAG
*
20894463 GCATACCGAGTTTATCCCCAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
* *
20894489 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
20894515 G
1 G
20894516 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATCCCCAGTCTAA
Done.