Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 198 of 402
Found at i:20894796 original size:158 final size:158
Alignment explanation
Indices: 20894489--20894822 Score: 355
Period size: 158 Copynumber: 2.1 Consensus size: 158
20894479 CCCAGTCTAA
* ** *
20894489 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGTGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCAAGGGTTGTGACAGCAGGATCGACA
* * * * * * *
20894554 GCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCACATTATGCCTCTCTAACTGACTCAACGCC
66 GCACGCAAGAGGGACCAGGTCGATCCCCAGCTTACACATTATACCTCTCGAACTGACTCAACACC
* *
20894619 CGAACGCTCGTTTCGTGGGTTGACTTAG
131 CGAACGCTCATTTCATGGGTTGACTTAG
* * *
20894647 GCATGCGGAGTTCATTCCCAATTTAAGATCGGATCAGACCAAGGGTTGTGACAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCAAGGGTTGTGACAGCAGGATCGACA
* * * * ** * * * * *
20894712 GCATGTAAGAGGGACCGGGTCGGTCCCCAGCTTATGCATTCTACCTCTCCGATC-GGCTGAGCAC
66 GCACGCAAGAGGGACCAGGTCGATCCCCAGCTTACACATTATACCTCT-CGAACTGACTCAACAC
* * * *
20894776 CCGCATGCTCATTTTATGGGTTGGCTTAG
130 CCGAACGCTCATTTCATGGGTTGACTTAG
* *
20894805 GTATATGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
20894823 ATGTCTAAGT
Statistics
Matches: 141, Mismatches: 34, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
158 138 0.98
159 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCAAGGGTTGTGACAGCAGGATCGACA
GCACGCAAGAGGGACCAGGTCGATCCCCAGCTTACACATTATACCTCTCGAACTGACTCAACACC
CGAACGCTCATTTCATGGGTTGACTTAG
Found at i:20895279 original size:551 final size:551
Alignment explanation
Indices: 20894009--20895406 Score: 1623
Period size: 551 Copynumber: 2.5 Consensus size: 551
20893999 TAGCATGCAG
* * * *
20894009 AGGGGGATCGGGCTGATCCCCGGCTTATGCATTATGCCTCTCCAGCTGGCTCAGCGCCTGCACGC
1 AGGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCTAGCTGGCTCAGCGCCCGCACGC
* * * * * *
20894074 TCATTCCGTGGGATGAATTAGGCATACGGAGTTCATTCCCA-GTCTAAGATTGGATCAGACCGAG
66 TCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCATGTCTAAGATCGGATCAGACCGAG
** *
20894138 GGTTACGACAGCAGGATCGACAGCACGCAAGAAGGGACCGGGCCGATCCCCCGCTTATGCATTCT
131 GGTTGTGACAGCAGGATCGACAGCACGCAA-AAGGGACCGGG-CGATCCCCAGCTTATGCATTCT
* * *
20894203 ACCTCTCCGGTCGGCTGA-CTGCCAGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTC
194 ACCTCTCCGGTCGGCTGAGC-GCCAGCATGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTC
* * * *
20894267 ATTACATATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGAT
258 ATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAACATCAGACCAGACCGAGGGTTACGAC
* * * **
20894332 AGCAGGACTAGTAGCAGGATCGGTAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGTGTATT
323 AGCAGGACCAGTAGCAGGATCAGTAGCACGCAGGGGGGACCGGGCCAATCCCCGACTTACGTATT
* *
20894397 ATGCCTCCTCTGCCTGCCTCTCCGACCGGCTGAACGCCCGCACACTCGTTTCGTGGGTTGACTTA
388 ATACCTCCTCTGCCGGCCTCTCCGACCGGCTGAACGCCCGCACACTCGTTTCGTGGGTTGACTTA
* * * ***
20894462 GGCATACCGAGTTTATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGA
453 GGCATACCGAGTTAATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGA
** *
20894527 CCGAGGGTTGTGACAGCAGGATCGACAGCACGCA
518 CCGAGGGTTACGACAGCAGGATCGACAACACGCA
* * * * * * * * * *
20894561 GGGGGGACCAGGTCGATCCCCGGCTTGCACATTATGCCTCTCTAACTGACTCAACGCCCGAACGC
1 AGGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCTAGCTGGCTCAGCGCCCGCACGC
*
20894626 TCGTTTCGTGGGTTGACTTAGGCAT-GCGGAGTTCATTCCCAAT-T-TAAGATCGGATCAGACCA
66 TCGTTTCGTGGGTTGACTTAGGCATAG-GGAGTTCATTCCC-ATGTCTAAGATCGGATCAGACCG
* * * * *
20894688 AGGGTTGTGACAGCAGGATTGACAGCATGTAAGAGGGACCGGGTCGGTCCCCAGCTTATGCATTC
129 AGGGTTGTGACAGCAGGATCGACAGCACGCAAAAGGGACCGGG-CGATCCCCAGCTTATGCATTC
* * * * * *
20894753 TACCTCTCCGATCGGCTGAGCACCCGCATGCTCATTTTATGGGTTGGCTTAGGTATATGGAGTTC
193 TACCTCTCCGGTCGGCTGAGCGCCAGCATGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTC
* * * * *
20894818 ATTCCATGTCTAAGTATACGAAGTTCATTCCTAGTCTAACATCAGACCCGATCGAGGGTTGCGAC
258 ATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAACATCAGACCAGACCGAGGGTTACGAC
* * * *
20894883 AGCAGGACCAGTAGCAGGATCAGTAGCATGCAGGGGGGATCGGGTCAATCCCTGACTTACGTATT
323 AGCAGGACCAGTAGCAGGATCAGTAGCACGCAGGGGGGACCGGGCCAATCCCCGACTTACGTATT
* * * * * *
20894948 CTACCT-CTCTGGCCGGCCTCTCCGACCGGCTGAGCGCCTGTACATTTGTTTCGTGGGTTGACTT
388 ATACCTCCTCT-GCCGGCCTCTCCGACCGGCTGAACGCCCGCACACTCGTTTCGTGGGTTGACTT
* *
20895012 AGGCATA-CGAAGTTAATCCTCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAACCA
452 AGGCATACCG-AGTTAATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCA
* ** *
20895076 GA-CGAGGGTTACGACAGTAGGATCGGTAACACGTA
516 GACCGAGGGTTACGACAGCAGGATCGACAACACGCA
* * * *
20895111 AGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCTGGCTGGCTGAGCGCCCGCACGC
1 AGGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCTAGCTGGCTCAGCGCCCGCACGC
* * * * ** * *
20895176 -CTGTTTCATGGGTTGGCTTAGGTATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCGGATCG
66 TC-GTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCATGTCTAAGATCGGA-TCAGACCG
* * * * * * * *
20895238 AGGGTTGTGGCAGCGGGACCGACAGCACGCAAAAGGGGACCGAGCTAATCCTCGGCTTGTGCATT
129 AGGGTTGTGACAGCAGGATCGACAGCACGCAAAA-GGGACCGGGC-GATCCCCAGCTTATGCATT
* * * ** ** * *
20895303 CTGCCTCTCTGGCCGATTGAGCGCTTGCTTGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
192 CTACCTCTCCGGTCGGCTGAGCGCCAGCATGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTT
*
20895368 CATTCCATGTCTAAGCATA-GGAGTTCATTCCCAGTCTAA
257 CATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
20895407 GAGTTTAAGC
Statistics
Matches: 700, Mismatches: 133, Indels: 28
0.81 0.15 0.03
Matches are distributed among these distances:
548 2 0.00
549 6 0.01
550 168 0.24
551 393 0.56
552 129 0.18
553 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (551 bp):
AGGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCTAGCTGGCTCAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCATGTCTAAGATCGGATCAGACCGAG
GGTTGTGACAGCAGGATCGACAGCACGCAAAAGGGACCGGGCGATCCCCAGCTTATGCATTCTAC
CTCTCCGGTCGGCTGAGCGCCAGCATGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATT
CCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAACATCAGACCAGACCGAGGGTTACGACAGC
AGGACCAGTAGCAGGATCAGTAGCACGCAGGGGGGACCGGGCCAATCCCCGACTTACGTATTATA
CCTCCTCTGCCGGCCTCTCCGACCGGCTGAACGCCCGCACACTCGTTTCGTGGGTTGACTTAGGC
ATACCGAGTTAATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCG
AGGGTTACGACAGCAGGATCGACAACACGCA
Found at i:20895391 original size:25 final size:26
Alignment explanation
Indices: 20895356--20895407 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
20895346 GTTGGCTTAG
20895356 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20895382 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20895407 G
1 G
20895408 AGTTTAAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20896299 original size:26 final size:26
Alignment explanation
Indices: 20896263--20896315 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20896253 GTTGACTTAG
*
20896263 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
*
20896289 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
20896315 G
1 G
20896316 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:20896471 original size:513 final size:518
Alignment explanation
Indices: 20895497--20897160 Score: 1607
Period size: 513 Copynumber: 3.2 Consensus size: 518
20895487 GCATCGTTAG
* * * * * *
20895497 AGCACGTA-AGGGGGATCAGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGATC-GACTGAGC
1 AGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCC-AGCAGGCTGAGC
* * * * ** * *
20895560 GCCCGCACGCTCGTTTCGTGGGTTGGTTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAA
65 ACTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCATGTCTAAGCCCGAG
* * * * * *
20895624 CCGGATTGAGGGTTATGGCAGCAGGA-C--TAGC---A--G-CA-CA-C-AGAGGGGGATCAGG-
130 TCGGACTGAGGGTTACGGCAGCAGGACCGACAGCAGGATCGACAGCACCTAGAGAGGGATCGGGC
* * * ** * *
20895676 TCGATCCCCGGCTTACGCATTATGCCTC-TCCAGCAAGC-TC-ATCG-C-CCGCACA--CAT-TT
195 T-GATCCCCGGATTGCACATTATGCCTCTTCGGGC-CGCTTCGA-CGACACC-CACATGC-TCGT
* * * *
20895733 TTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAACATACGAAGTTCATTCCCAGT
255 TTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
* * * * * * * * *
20895798 CTAAGATCAGACCGGA-CTGAAGGTTGTGGTAGTAGGATCGGTAGCACGCAAGGGTGATCAGGCT
320 CTAAGATCAGACCGGATC-GAGGGTTGTAGCAGCAGGATCGGTAGCACGTAGGGGGGATCGGGCC
* * * * * * *
20895862 GGTCCCCGACTTACGCATTCTGCCTTTCC-GACTGGCTGAGTGCCCGCATGCCTGTTTCATGGGT
384 GATCCCCGGCTTACGCATTCTGCCTCTCCAG-CCGGCTGAGCGCCCGCACGCCCGTTTCATGGGT
* * * *
20895926 TCGCTTAGGCATAGGGAATTCGTTCAATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACGG
448 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACGG
20895991 GATCGGC
513 GA-CGGC
** * * *
20895998 AGCACGCAGAGGGGGACCGGGCAAATCCCTGGCCTGCGCATTATGCCTCTCCAGCAGGCTCAGCA
1 AGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGCAGGCTGAGCA
* * * **
20896063 CTCGAATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCG-GA
66 CTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCATGTCTAAGCCCGAG-
* * * *
20896126 TCGGA-TCGAGGGTTACGGTAGCAGGACC-AGTAGTAGGATCGATAGCACGC-AGAG-GGGATCG
130 TCGGACT-GAGGGTTACGGCAGCAGGACCGA-CAGCAGGATCGACAGCAC-CTAGAGAGGGATCG
* * * * *
20896187 GG-TCGATCCCTGGCTTGCGCATTCTGCCTCTTC-GGCCAGC-T-GA-G-CGCCCACATGCTCGT
192 GGCT-GATCCCCGGATTGCACATTATGCCTCTTCGGGCC-GCTTCGACGACACCCACATGCTCGT
* * *
20896246 TTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCACAGT
255 TTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
* * *
20896311 CTAAGATC-GAATCGGATCGAGGGTTGCAACAGCAGGATCGGTAGCACGTAGGGGGGATCGGGCC
320 CTAAGATCAG-ACCGGATCGAGGGTTGTAGCAGCAGGATCGGTAGCACGTAGGGGGGATCGGGCC
* * * *
20896375 AATCCTCGGCTTATGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCCCATTTCATGGGTT
384 GATCCCCGGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTT
* *
20896440 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTCTGG-AAGCGG
449 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAA-CGG
20896504 GACCGGC
513 GA-CGGC
* ** * **
20896511 AGCACGCAGAAGGGGACCAAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGTG
1 AGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGCAGGCTGAGCA
* ** * * *
20896576 CTCGCACGCTCATTTTGTGGGTTGGCCTAGGCATAC-GAAGATCATT-CCATGTCTAAGCCCTAG
66 CTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAG-AGTTCATTCCCATGTCTAAGCCCGAG
** *
20896639 TCGGACTGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGACAGCACCTAGAGAGGGATCGGGC
130 TCGGACTGAGGGTTACGGCAGCAGGACCGACAGCAGGATCGACAGCACCTAGAGAGGGATCGGGC
* *
20896704 TGATCCCCGGATTGCACATTATGCCTCTTCGGTTGGCCTCTTCGATCGGTTAAACACCCGCATGC
195 TGATCCCCGGATTGCACATTATGCCTCTTC-G--GGCCGCTTCGA-C-G----ACACCCACATGC
* *
20896769 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTTTAAGCATACCAAGTTCATTCC
251 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCC
* * * *
20896834 CAGTGTAAGATCAGACCGGATCGAGGGTTGTAGCAGCAGGATCGGCAGTACGTAGGGGGGACCGG
316 CAGTCTAAGATCAGACCGGATCGAGGGTTGTAGCAGCAGGATCGGTAGCACGTAGGGGGGATCGG
* * * * * *
20896899 GCCGATCCCCGGCTTGCGCATTTTGCCTCTCCAGCCGGTTGAGCACCCGGACGCCCGTTTCGTGG
381 GCCGATCCCCGGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCCCGTTTCATGG
* * * *
20896964 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAACCGGATCGAGGGTTGTGGCAGC
446 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAAC
20897029 GGGACTGGC
511 GGGAC-GGC
* * * ** *
20897038 AGCACGTAGAGGGGGACCGGGCCGAT-CCTCGGCTTGTGCATTCTGCCTCTCCGGTTGGTTGAGC
1 AGCACGCAGAGGGGGACCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCAGCAGGCTGAGC
* * * * * *
20897102 ACCCGCACACTTGTTGCATGGGTTGGCTTAGTCATACAGAGTTCATT-CCATGTTTAAGC
65 ACTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCATGTCTAAGC
20897161 ATATGGAGTT
Statistics
Matches: 950, Mismatches: 158, Indels: 84
0.80 0.13 0.07
Matches are distributed among these distances:
501 10 0.01
502 110 0.12
503 4 0.00
505 3 0.00
508 1 0.00
510 1 0.00
511 7 0.01
512 13 0.01
513 399 0.42
514 46 0.05
515 1 0.00
517 1 0.00
518 5 0.01
519 2 0.00
522 1 0.00
526 4 0.00
527 339 0.36
528 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (518 bp):
AGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGCAGGCTGAGCA
CTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCATGTCTAAGCCCGAGT
CGGACTGAGGGTTACGGCAGCAGGACCGACAGCAGGATCGACAGCACCTAGAGAGGGATCGGGCT
GATCCCCGGATTGCACATTATGCCTCTTCGGGCCGCTTCGACGACACCCACATGCTCGTTTCGTG
GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
TCAGACCGGATCGAGGGTTGTAGCAGCAGGATCGGTAGCACGTAGGGGGGATCGGGCCGATCCCC
GGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAG
GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACGGGACGGC
Found at i:20897104 original size:159 final size:158
Alignment explanation
Indices: 20896848--20897154 Score: 427
Period size: 159 Copynumber: 1.9 Consensus size: 158
20896838 GTAAGATCAG
*
20896848 ACCGGATCGAGGGTTGTAGCAGCAGGATCGGCAGTACGTAGGGGGGACCGGGCCGATCCCCGGCT
1 ACCGGATCGAGGGTTGTAGCAGCAGGATCGGCAGCACGTAGGGGGGACCGGGCCGATCCCCGGCT
* * * * *
20896913 TGCGCATTTTGCCTCTCCAGCCGGTTGAGCACCCGGACGCCCGTTTCGTGGGTTGGCTTAGGCAT
66 TGCGCATTCTGCCTCTCCAGCCGGTTGAGCACCCGCACACCCGTTGCATGGGTTGGCTTAGGCAT
**
20896978 AGGGAGTTCATTCCATGTCTAAACCCCA
131 ACAGAGTTCATTCCATGTCTAAACCCCA
* * *
20897006 ACCGGATCGAGGGTTGTGGCAGCGGGA-CTGGCAGCACGTAGAGGGGGACCGGGCCGATCCTCGG
1 ACCGGATCGAGGGTTGTAGCAGCAGGATC-GGCAGCACGTAG-GGGGGACCGGGCCGATCCCCGG
* * ** ** *
20897070 CTTGTGCATTCTGCCTCTCCGGTTGGTTGAGCACCCGCACACTTGTTGCATGGGTTGGCTTAGTC
64 CTTGCGCATTCTGCCTCTCCAGCCGGTTGAGCACCCGCACACCCGTTGCATGGGTTGGCTTAGGC
20897135 ATACAGAGTTCATTCCATGT
129 ATACAGAGTTCATTCCATGT
20897155 TTAAGCATAT
Statistics
Matches: 129, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
157 1 0.01
158 36 0.28
159 92 0.71
ACGTcount: A:0.17, C:0.27, G:0.33, T:0.23
Consensus pattern (158 bp):
ACCGGATCGAGGGTTGTAGCAGCAGGATCGGCAGCACGTAGGGGGGACCGGGCCGATCCCCGGCT
TGCGCATTCTGCCTCTCCAGCCGGTTGAGCACCCGCACACCCGTTGCATGGGTTGGCTTAGGCAT
ACAGAGTTCATTCCATGTCTAAACCCCA
Found at i:20898623 original size:26 final size:26
Alignment explanation
Indices: 20898594--20898646 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20898584 GTTGGCTTAG
*
20898594 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
20898620 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20898646 G
1 G
20898647 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20899346 original size:26 final size:26
Alignment explanation
Indices: 20899297--20899349 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20899287 GTTAGCTTAG
*
20899297 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
20899323 GCATATGGAGTTCATT-CAGAGTCTAA
1 GCATACGGAGTTCATTCCA-AGTCTAA
20899349 G
1 G
20899350 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:20900019 original size:159 final size:159
Alignment explanation
Indices: 20899827--20900206 Score: 406
Period size: 159 Copynumber: 2.4 Consensus size: 159
20899817 CAGTTGGCTG
* **
20899827 AGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATA-GAGAGTTCATTCCATGTCTAAGCCC
1 AGCGCCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATACG-GAGTTCATTCCATGTCTAAGCCC
** ** * ** *
20899891 CAGTCAGACCGACGATTGTGGTAGTGGGACCGACAGCACATAGAGG-GGGATCGGGCTGATCCAC
65 CAACCAGACCGACGATTACGATAGCAGGACCGACAGCACACAG-GGAGGGATCGGGCTGATCCAC
* *
20899955 GACCTGCGCATTATACCTCTTCGACTGGATC
129 GACCTGCACATTATACCTCTTCGACAGGATC
* * * **
20899986 AGTGCCTGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATC
1 AGCGCCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCC
* * * * * * * *
20900050 GAACCGGACCGAGGGTTACGATAGCAGGATCGACAGCACGCAGGGAGGGATCGGGCTGGTCCCCG
65 CAACCAGACCGACGATTACGATAGCAGGACCGACAGCACACAGGGAGGGATCGGGCTGATCCACG
* * * * *
20900115 ACTTGCACATTCTGCCTCTTCGACAGGCTG
130 ACCTGCACATTATACCTCTTCGACAGGATC
***
20900145 AGCGCCCGCGTGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 AGCGCCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
20900207 ATACGGAGTT
Statistics
Matches: 179, Mismatches: 38, Indels: 8
0.80 0.17 0.04
Matches are distributed among these distances:
158 5 0.03
159 170 0.95
160 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
AGCGCCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
AACCAGACCGACGATTACGATAGCAGGACCGACAGCACACAGGGAGGGATCGGGCTGATCCACGA
CCTGCACATTATACCTCTTCGACAGGATC
Found at i:20900215 original size:26 final size:26
Alignment explanation
Indices: 20900179--20900231 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20900169 GTTGGCTTAG
20900179 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20900205 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20900231 G
1 G
20900232 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20900427 original size:26 final size:26
Alignment explanation
Indices: 20900391--20900441 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20900381 TGACTTAGGT
*
20900391 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGAAGTTCATCCCCAGTCTAAGC
*
20900417 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
20900442 ATCTAACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGC
Found at i:20901321 original size:26 final size:26
Alignment explanation
Indices: 20901291--20901343 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20901281 GTTGACTTAG
*
20901291 GCATATGGAGTTCATCCCCAGTATAA
1 GCATACGGAGTTCATCCCCAGTATAA
* *
20901317 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTATAA
20901343 G
1 G
20901344 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTATAA
Found at i:20902207 original size:26 final size:24
Alignment explanation
Indices: 20902157--20902207 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
20902147 GGTTGCTTAG
*
20902157 GCATATGAGTTATGCCCCGTCTAA
1 GCATATGAGTTATGCCCAGTCTAA
*
20902181 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAT-GAGTT-ATGCCCAGTCTAA
20902207 G
1 G
20902208 ATCAGATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 6 0.26
25 5 0.22
26 12 0.52
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (24 bp):
GCATATGAGTTATGCCCAGTCTAA
Found at i:20902693 original size:158 final size:159
Alignment explanation
Indices: 20902307--20902835 Score: 471
Period size: 158 Copynumber: 3.3 Consensus size: 159
20902297 CACCGTCGTC
* * *
20902307 CGTTTCGTGGGTTGGCTTTAAGGCATAGGAGTT-TTTCCATGTCTAAGGCCCCCAGCCCAGACCG
1 CGTTTCGTGGGTTGGC-TT-AGGCATAGGAGTTCATTCCATGTCTAA-G-CCCCAGACCGGACCG
* * *
20902371 AGGGTTGATGGTAGTGAAGACCGACAGCACGCAGAGGGGGTTCGGG-TCGATCCCCGGCTTGCGC
62 AGGGTTG-TGGTAG-CAGGACCGACAGCACGCAGAGGGGGATCGGGCT-GATCCCCGGCTTGCGC
* * * **
20902435 ATTATGCCTTTCCGACCGACTCAATGCCCGCACGCT
124 ATTATGCCTCTACGACCGGCTCAGCGCCCGCACGCT
* * * * * ** * *
20902471 TGTTTTGTGGGTTGACTTACGCATACGGAGTTCATTCCCA-ATCTAAG-ATCGGACCGAACCGAG
1 CGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATT-CCATGTCTAAGCCCCAGACCGGACCGAG
* * * * *
20902534 GGTTGCGGTAGCAGGATCGACAGCACGGAGGGGGGGATCGGGCCTG-TCCCCGGCTTGCACATT-
64 GGTTGTGGTAGCAGGACCGACAGCACGCAGAGGGGGATCGGG-CTGATCCCCGGCTTGCGCATTA
** *
20902597 TGCCTCTACGGTCGGCTGAGCGCCCGCACGCT
128 TGCCTCTACGACCGGCTCAGCGCCCGCACGCT
*
20902629 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACTGAGG
1 CGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCCCAGACCGGACCGAGG
** ** * * * * *
20902693 GTTGTGACAGTGGGACCGGCAGCATGCAGAGGGGGACCGGGCTGATCCCCGGCTTGTGCATTACG
65 GTTGTGGTAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATG
* * * * *
20902758 CCTC-ACCGACCAGCTCAGCACCCGTACACC
130 CCTCTA-CGACCGGCTCAGCGCCCGCACGCT
* * *
20902788 CATTTTGTGGGTTAGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
1 CGTTTCGTGGGTTGGCTTAGGCAT-AGGAGTTCATTCCATGTCTAAGC
20902836 ATGCAAGGGG
Statistics
Matches: 290, Mismatches: 64, Indels: 27
0.76 0.17 0.07
Matches are distributed among these distances:
157 6 0.02
158 116 0.40
159 107 0.37
160 7 0.02
161 16 0.06
162 6 0.02
163 9 0.03
164 20 0.07
165 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
CGTTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCAGACCGGACCGAGGG
TTGTGGTAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGC
CTCTACGACCGGCTCAGCGCCCGCACGCT
Found at i:20902957 original size:26 final size:26
Alignment explanation
Indices: 20902927--20902979 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20902917 GTTGGCTTAG
20902927 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
20902953 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20902979 G
1 G
20902980 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20903636 original size:159 final size:158
Alignment explanation
Indices: 20903366--20903830 Score: 427
Period size: 159 Copynumber: 2.9 Consensus size: 158
20903356 CGAACTGGAT
* * * * *
20903366 CGAGGGTTGCAGCAGCAGGATTTG-CAGCATGCAGGGGGGACCGGGCCGATCCTCGACTTACGCA
1 CGAGGGTTGCAGCAGCAGGA-TCGACAGCACGCAGGGGGGATCGGGCTGATCCCCGACTTACGCA
* * * * ** * * * * * *
20903430 TTCTACCTCTCCGCCCGACGGAGCACCCGTACACCCCTTTCATGGGTTAGCTTAGGCATAGGGAG
65 TTATGCCTCTCCGACCGGCTCAACACCCGAACGCTCATTTCATGGGTT-GCTTAGGCATACGGAG
* *
20903495 TTCATTCCAAGTCTAAGCCCCAG-TCGGAC
129 TTCATTCCAAGTCTAAGCACCAGACCGGAC
** * ** *
20903524 CGAGGGTTGTGGCAGCGGGATCGGTAGCACGCAGAGGGGGA-CTGGG-TCGATCCCCGACTTGCG
1 CGAGGGTTGCAGCAGCAGGATCGACAGCACGCAG-GGGGGATC-GGGCT-GATCCCCGACTTACG
* * **
20903587 CATTATGCCTCTCCGACCGGCTCAACGCCCGAATGCTCATTTTGTGGGTTGACTTAGGCATACGG
63 CATTATGCCTCTCCGACCGGCTCAACACCCGAACGCTCATTTCATGGGTTG-CTTAGGCATACGG
* * *
20903652 AGTTCATTCCCAGTCTAAG-ATCGGACCGGAC
127 AGTTCATTCCAAGTCTAAGCACCAGACCGGAC
* * * *
20903683 CGAGTGTTGCAGCAGCAGGATTGACAGCATGCAGGGGGGATCGGGCTGGTCCCCGACTTACGCAT
1 CGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCTGATCCCCGACTTACGCAT
* ** * * * * *
20903748 TCTGCCTCTCCGGTCGGCTGAGCACCCGGACGCTCGTTTCATGGGTTGGCTTAGACATACGGAGT
66 TATGCCTCTCCGACCGGCTCAACACCCGAACGCTCATTTCATGGGTT-GCTTAGGCATACGGAGT
*
20903813 TCATTCCATGTCTAAGCA
130 TCATTCCAAGTCTAAGCA
20903831 TATGGAGTTC
Statistics
Matches: 243, Mismatches: 54, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 119 0.49
159 122 0.50
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
CGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCTGATCCCCGACTTACGCAT
TATGCCTCTCCGACCGGCTCAACACCCGAACGCTCATTTCATGGGTTGCTTAGGCATACGGAGTT
CATTCCAAGTCTAAGCACCAGACCGGAC
Found at i:20903795 original size:158 final size:156
Alignment explanation
Indices: 20903348--20903828 Score: 473
Period size: 158 Copynumber: 3.0 Consensus size: 156
20903338 CGGAGTTCAT
* * *
20903348 TCTAAGATCGAACTGGATCGAGGGTTGCAGCAGCAGGATTTGCAGCATGCAGGGGGGACCGGGCC
1 TCTAAGATCGAACCGGACCGAGGGTTGCAGCAGCAGGA-TTGCAGCATGCAGGGGGGA-CGGGCT
* * * * * * * * *
20903413 GATCCTCGACTTACGCATTCTACCTCTCCGCCCGACGGAGCACCCGTACACCCCTTTCATGGGTT
64 GATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCACCCGAACGCTCATTTCATGGGTT
* *
20903478 -AGCTTAGGCATAGGGAGTTCATTCCAAG
129 GA-CTTAGGCATACGGAGTTCATTCCCAG
** * ** ** * * * *
20903506 TCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGATCGGTAGCACGCAGAGGGGGACTGGG-
1 TCTAAGATCGAACCGGACCGAGGGTTGCAGCAGCAGGAT-TGCAGCATGCAG-GGGGGAC-GGGC
* * * * * * **
20903570 TCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAACGCCCGAATGCTCATTTTGTGGG
63 T-GATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCACCCGAACGCTCATTTCATGGG
20903635 TTGACTTAGGCATACGGAGTTCATTCCCAG
127 TTGACTTAGGCATACGGAGTTCATTCCCAG
* *
20903665 TCTAAGATCGGACCGGACCGAGTGTTGCAGCAGCAGGATTGACAGCATGCAGGGGGGATCGGGCT
1 TCTAAGATCGAACCGGACCGAGGGTTGCAGCAGCAGGATTG-CAGCATGCAGGGGGGA-CGGGCT
* ** * *
20903730 GGTCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGGACGCTCGTTTCATGGGTT
64 GATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCACCCGAACGCTCATTTCATGGGTT
* *
20903795 GGCTTAGACATACGGAGTTCATT-CCATG
129 GACTTAGGCATACGGAGTTCATTCCCA-G
20903823 TCTAAG
1 TCTAAG
20903829 CATATGGAGT
Statistics
Matches: 253, Mismatches: 61, Indels: 18
0.76 0.18 0.05
Matches are distributed among these distances:
157 4 0.02
158 128 0.51
159 120 0.47
160 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
TCTAAGATCGAACCGGACCGAGGGTTGCAGCAGCAGGATTGCAGCATGCAGGGGGGACGGGCTGA
TCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCACCCGAACGCTCATTTCATGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAG
Found at i:20903837 original size:26 final size:26
Alignment explanation
Indices: 20903803--20903854 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20903793 TTGGCTTAGA
20903803 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
*
20903829 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
20903855 ATCAGTCTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:20903959 original size:184 final size:184
Alignment explanation
Indices: 20903644--20904407 Score: 755
Period size: 184 Copynumber: 4.0 Consensus size: 184
20903634 GTTGACTTAG
** * *
20903644 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGTGTTGCAGCAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAG-GTTGCGGCAGCAGGATCGACA
* * * *
20903709 GCATGCAGGGGGGATCGGGCTGGTCCCCGACTTACGCATTCTGCCTCTCCGG-TCGGCTGAGCAC
65 GCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCTCGGCTGAGCAC
* *
20903773 CCGGACGCTCGTTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTAA
130 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* ** * *
20903828 GCATATGGAGTTCATTCCCAGTCTAAGATCAGTCTGGATCGAGGCTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGG-TTGCGGCAGCAGGATCGACA
* * * * *
20903893 GCACGCAGGGGGGA-CTAGGCCGGTCCCTGGCTTGCGCATTCTGCCTCTTCGGCT-GGCTGAGCA
65 GCACGCAGGGGGGATC-GGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCTCGGCTGAGCA
*
20903956 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * **
20904012 GCATACGGAGTTCATCCCCATTCTAAGATCAAATTGGACCGAGGATTACGGTATCAGGACTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGG-TT---G---C-GG-C-AG--
* * * * *
20904077 ACAGGATTGACAGCACGTAGGGGGGACCGGGCCGATCCCCAACTTGCACATTCTGCCTCTCCGGT
54 -CAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCT-C---
* * *
20904142 CGGCCTCTCCGACCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
114 CGG---CT-----CGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
* *
20904207 CATCCCCA-GTATAA
171 CAT-TCCATGTCTAA
* * ** * * **
20904221 GCATACAGAGTTCAATCCCAGTCTAAGATCAAACCAAACTCGAGGGTTGTGGCAGTAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGAC-CGA-GGTTGCGGCAGCAGGATCGAC
* * * * *
20904286 AGCACACAGTGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGAC-CGGCTGAACG
64 AGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCTCGGCTGAGCA
* * *
20904350 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
20904406 GC
1 GC
20904408 CCCAGCCGGA
Statistics
Matches: 479, Mismatches: 68, Indels: 65
0.78 0.11 0.11
Matches are distributed among these distances:
183 2 0.00
184 203 0.42
185 57 0.12
187 1 0.00
190 1 0.00
191 3 0.01
192 1 0.00
193 2 0.00
194 2 0.00
196 49 0.10
197 2 0.00
198 49 0.10
200 3 0.01
201 2 0.00
202 1 0.00
203 4 0.01
207 1 0.00
209 86 0.18
210 8 0.02
211 2 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGTTGCGGCAGCAGGATCGACAG
CACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCTCGGCTGAGCACC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:20904036 original size:26 final size:26
Alignment explanation
Indices: 20903986--20904038 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20903976 GTTGGCTTAG
*
20903986 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCATGTCTAA
20904012 GCATACGGAGTTCATCCCCAT-TCTAA
1 GCATACGGAGTTCAT-CCCATGTCTAA
20904038 G
1 G
20904039 ATCAAATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATGTCTAA
Found at i:20904225 original size:26 final size:26
Alignment explanation
Indices: 20904195--20904247 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20904185 GTTGACTTAG
*
20904195 GCATACGGAGTTC-ATCCCCAGTATAA
1 GCATACAGAGTTCAAT-CCCAGTATAA
*
20904221 GCATACAGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTATAA
20904247 G
1 G
20904248 ATCAAACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTATAA
Found at i:20904512 original size:159 final size:158
Alignment explanation
Indices: 20904262--20904566 Score: 457
Period size: 159 Copynumber: 1.9 Consensus size: 158
20904252 AACCAAACTC
* * *
20904262 GAGGGTTGTGGCAGTAGGATCGGTAGCACACAGTGGGGATCGGGCCGATCCCCGACTTGCGCATT
1 GAGGGTTGTGGCAGTAGGACCGGCAGCACACAGGGGGGATCGGGCCGATCCCCGACTTGCGCATT
* *
20904327 CTGCCTCTCCGACCGGCTGAACGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTT
66 CTGCCTCTCCGACCGACTGAACGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
20904392 CATTCCATGTCTAAGCCCCAGCCGGACT
131 CATTCCATGTCTAAGCCCCAGCCGGACT
* * ** * * *
20904420 GAGGGTTTTGGCAGTGGGACCGGCAGCATGCAGGGGGTGATCGGGCCGATCCCCGGCTTGTGTAT
1 GAGGGTTGTGGCAGTAGGACCGGCAGCACACAGGGGG-GATCGGGCCGATCCCCGACTTGCGCAT
* ** *
20904485 TCTGCCTCTTCGACCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
65 TCTGCCTCTCCGACCGACTGAACGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
20904550 TCATTCCATGTCTAAGC
130 TCATTCCATGTCTAAGC
20904567 ATACGGAGTT
Statistics
Matches: 130, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
158 30 0.23
159 100 0.77
ACGTcount: A:0.15, C:0.28, G:0.33, T:0.24
Consensus pattern (158 bp):
GAGGGTTGTGGCAGTAGGACCGGCAGCACACAGGGGGGATCGGGCCGATCCCCGACTTGCGCATT
CTGCCTCTCCGACCGACTGAACGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCCCCAGCCGGACT
Found at i:20904575 original size:26 final size:26
Alignment explanation
Indices: 20904539--20904591 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20904529 GTTGGCTTAG
20904539 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20904565 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20904591 G
1 G
20904592 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20904714 original size:18 final size:18
Alignment explanation
Indices: 20904691--20904725 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
20904681 AGAGCCTAAC
20904691 CGACGGCATTGGGGGTTT
1 CGACGGCATTGGGGGTTT
20904709 CGACGGCATTGGGGGTT
1 CGACGGCATTGGGGGTT
20904726 CCGATGATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.17, G:0.46, T:0.26
Consensus pattern (18 bp):
CGACGGCATTGGGGGTTT
Found at i:20905314 original size:26 final size:26
Alignment explanation
Indices: 20905278--20905330 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20905268 GTTGACTTAG
*
20905278 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
20905304 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20905330 G
1 G
20905331 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20905668 original size:159 final size:157
Alignment explanation
Indices: 20905304--20905797 Score: 478
Period size: 159 Copynumber: 3.1 Consensus size: 157
20905294 CCTAGTCTAA
* * * *
20905304 GCATACAGAGTTCATTCCCAGTCTAAGATCGGA-CTGGATCGGGGGTTGCGGTAGGAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGATCGAGGGTTGCGGTAGG-GGATCGAC
** * * * * *
20905368 AGCACTTATGAGGGATCGGGTTGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGC
64 AGCACACAGGAGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGCGC
20905433 CCGTACGC-C-CGTTTCGTGGGTTGGCTTAG
129 CC--ACGCGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * *
20905462 GCATAGGGAGTTTATT-CCATGTCTAAGCCCCAG-TCGGATCGAAGGTTGTGGCAGTGGGATCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGATCGAGGGTTGCGGTAG-GGGATCGA
* * * * * * *
20905525 CAGCACACAGAGAGGGACCGGGCCGATCCTCGGCTTGTGCATTATGCCTCTCCGGCTGACTCAAC
63 CAGCACACAG-GAGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGC
* *
20905590 GCCCACGCGCTCGTTTCATGGGTTGACTTAG
127 GCCCACGCGCTCGTTTCGTGGGTTGGCTTAG
*
20905621 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-CTGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATC-GAGGGTTGCGGTAG-GGGATCGAC
* ** * * * * * *
20905685 AGCACGCAGGAGGGGATTAGGTCGGTCCCCAGCTTGCGTATTTTGCCTCTCCGACCGACTGAGTG
64 AGCACACAGGA-GGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGCG
** * *
20905750 CCTGCACGCTTGTTTCGTGGGTTGGCTTAG
128 CCCACGCGCTCGTTTCGTGGGTTGGCTTAG
20905780 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
20905798 ATGTCCAAGC
Statistics
Matches: 267, Mismatches: 58, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 7 0.03
158 55 0.21
159 202 0.76
160 3 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGGGGATCGACAG
CACACAGGAGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGCGCCC
ACGCGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20906189 original size:25 final size:26
Alignment explanation
Indices: 20906159--20906217 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 26
20906149 GTTGACTTAG
20906159 GCATACGGATTTCA-TCCCGGTCTAA
1 GCATACGGATTTCATTCCCGGTCTAA
* * *
20906184 GCATACAGAGTTCATTCTCGGTCTAA
1 GCATACGGATTTCATTCCCGGTCTAA
20906210 G-AT-CGGAT
1 GCATACGGAT
20906218 CGGACCGAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
24 3 0.11
25 14 0.50
26 11 0.39
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (26 bp):
GCATACGGATTTCATTCCCGGTCTAA
Found at i:20906384 original size:26 final size:26
Alignment explanation
Indices: 20906354--20906406 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20906344 GTTGGCTTAG
20906354 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20906380 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20906406 G
1 G
20906407 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20913275 original size:158 final size:157
Alignment explanation
Indices: 20913004--20913476 Score: 513
Period size: 158 Copynumber: 3.0 Consensus size: 157
20912994 GTCTAAGATC
* * *
20913004 AGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGATCGGGCCAATCCCCGG
1 AGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGA-CCGGCCGATCCCCGG
* * * * *
20913069 CTTGTGCATTCTGCCTCTCCAGCTGGCTGAGTGCCCATACGC-CTGTTTCATGGGTTGGCTTAGG
65 CTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGTACGCTC-GTTTCGTGGGTTGGCTTAGG
* *
20913133 CATAGGGAGTTTATTCAATGTCAAGCCCT
129 CATACGGAGTTTATTCAATGTCAAGCACT
* * * **
20913162 AG-CCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGAGGGACCGGACCGATCCTTG
1 AGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAG-GGGGGACCGG-CCGATCCCCG
* * *
20913226 GCTTGCGCATTATGCCTCTCCGGCTGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGG
64 GCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGG
** * * *
20913291 TGTACAGAGTTTATTCCCAATCT-AAG-ATT
129 CATACGGAGTTTATT--CAATGTCAAGCACT
* * * * ** * *
20913320 GGACCAGACTGAGGGTTGTGGCAGTAGGATCAACAGCACCCAGGGGGGACCAGGCTGATCCCCGG
1 AGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGACC-GGCCGATCCCCGG
* * ** *
20913385 CTTGCACATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
65 CTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGC
*
20913450 ATACGGAGTTCATTCAATGTCTAAGCA
130 ATACGGAGTTTATTCAATGTC-AAGCA
20913477 TACGGAGTTC
Statistics
Matches: 256, Mismatches: 49, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
156 5 0.02
157 40 0.16
158 167 0.65
159 39 0.15
160 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (157 bp):
AGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGCCGATCCCCGGC
TTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCA
TACGGAGTTTATTCAATGTCAAGCACT
Found at i:20914318 original size:157 final size:158
Alignment explanation
Indices: 20913949--20914318 Score: 359
Period size: 159 Copynumber: 2.3 Consensus size: 158
20913939 TGAACGCCCT
* * ** * ** *
20913949 GCACGCCCGTTTCGGGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAACCCCCAGCTGAA
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA-GACCAGATGAA
* ** *
20914014 CCGACGGTTGTGGCAGCCGGACCGACAGCACGTAGAGGGGGACCGAGCTGATCCCCGACTTGCTC
65 CCGACGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGACCGAGCCAATCCCCGACTTGCGC
* * * * *
20914079 ATTATGCCTTTTCGACCGGCTCAGCACCC
130 ACTATGCCTCTCCAACCGACTCAGCACCC
* * * * * * * *
20914108 GCACGTTCATTTCGTGGGTTGACTTAGGCTTACAGAGATCATTCCCA-GCCTAAGATCAGATCGG
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGACCAGAT-GA
* * * ** * *
20914172 ACCTAGGGTTGTGGCAGTAGGATTGACAGCACGTAG-GGGGGACCGAGCCAATCCCTGGCTTGCG
64 ACCGACGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGACCGAGCCAATCCCCGACTTGCG
* * **
20914236 CACTCTGCCTCTCCAACCGACT-GGCGGCC
129 CACTATGCCTCTCCAACCGACTCAGCACCC
*
20914265 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
20914319 CATACGGAGT
Statistics
Matches: 165, Mismatches: 43, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
156 3 0.02
157 47 0.28
158 43 0.26
159 70 0.42
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGACCAGATGAAC
CGACGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGACCGAGCCAATCCCCGACTTGCGCA
CTATGCCTCTCCAACCGACTCAGCACCC
Found at i:20914322 original size:26 final size:26
Alignment explanation
Indices: 20914292--20914344 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20914282 GTTGGCTTAG
20914292 GCATACAGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
*
20914318 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
20914344 G
1 G
20914345 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:20914522 original size:844 final size:841
Alignment explanation
Indices: 20912914--20915172 Score: 2518
Period size: 844 Copynumber: 2.7 Consensus size: 841
20912904 TTGTCGGCTA
* * * * * * * * *
20912914 AGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATGCCCAGTCTAAGTATA
1 AGCGCCCGCACGCTCATTTCATGGATTGACGTAGGCATACGAAGTTCATCCCCAATCTAAGCATA
*
20912979 CAGAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
66 CAGAGTTCATTCCCAGTCTAAGATCGA-ACAGGACCGAGGGTT---GC-G-A--A---GCAGCAC
* * ** *
20913043 GCAGGGGGGATCGGGCCA-ATCCCCGGCTTGTGCATTCTGCCTCTCCAGCTGGCTGAGTGCCCAT
120 GCAAGGGGGATCGGG-CAGATCCCCGACTTACGCATTCTGCCTCTCCATC-GGCTGAGTGCCC-T
* * * * *
20913107 --ACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTTATTCAATGTC-AAGCCCTAGCCGGA
182 GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTC-ATGTCTAAGCCCCAG-CGAA
* * * *
20913169 CCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGAGGGACCGGACCGATCCTTGGCTTGCGC
245 CCGA-GGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGG-CCGATCCCTGGCTTGCAC
* * * * * *
20913234 ATTATGCCTCTCCGGCTGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGG-TGTACAG
308 ATTATGCCTTTTCGGCCGGCTCAGCACCCGCACGTTCGTTTCGTGGGTTGACTTAGGCT-TACAG
* * * * * *
20913298 AGTTTATTCCCAATCTAAGATTGGACCAGA-CTGAGGGTTGTGGCAGTAGGATCAACAGCACCCA
372 AGTTCATTCCCAGTCTAAGA-TCGACCGGACCT-AGGGTTGTGGCAGTAGGATCGACAGCACGCA
* *
20913362 GGGGGGACC-AGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACG
435 GGGGGGACCGA-GCCGATCCCTGGCTTGCACATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACG
*
20913426 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCATACGGAGTTCATTC
499 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
* * * * * * *
20913491 TCAGTCTATGATCAGACTGGACTAAGGGTTGCAGCAGTAGGATGGGCAGCAGGTAAGGAGGGACC
564 TCAGTCTAAGATCAGACCGGACTAAGGGTTGCAGCAGCAGGATCGACAGCACGTAAGGAGGGAAC
* * ** ** *
20913556 GGGCCGATCCCCGACTTACGCATTCTGCCTCTTCGATCGGCTGAGTGCCCGCACGCTTGTTTCGT
629 GGGCCGATACCCGACTTACGCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCTCATTTCAT
* * *
20913621 GGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAG
694 GGGTTGGCTTAAGCATACGAGTTCATTCAATGTCTAAGCCCCAGTCGAATCGAGGGTTGTGGCAG
* * * * * * **
20913686 TAGGACCGATAGCAGGACCGACAACAAGTAGAGGGGGACCGAGCTGATCCCCGACTTGCGTGTTA
759 CAGGACCGACAACAGGACCGACAACAAGCAGAAGGGGACCGAGCTGATCCCCGACTTACGCATTA
20913751 TGCCTCT-TCGA-CTGGTTG
824 TGCCTCTCT-GATC-GGTTG
* *
20913769 AGCGCCCGCACGCTCGTTTCATGGATTGACGTAGGCATACGAAGTTCATCCCTAATCTAAGCATA
1 AGCGCCCGCACGCTCATTTCATGGATTGACGTAGGCATACGAAGTTCATCCCCAATCTAAGCATA
* *
20913834 CGGAGTTCATTCCCAGTCTAAGATCGAATCA-GACTGAGGGTTGCG-A-CAGCACGCAAGGGGGA
66 CAGAGTTCATTCCCAGTCTAAGATCGAA-CAGGACCGAGGGTTGCGAAGCAGCACGCAAGGGGGA
* * **
20913896 TCGGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGTTGAACGCCCTGCACGCCCGTTT
130 TCGGGCAGATCCCCGACTTACGCATTCTGCCTCTCC-ATCGGCTGAGTGCCCTGCACGCCCGTTT
* *
20913961 CGGGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAACCCCCAGCTGAACCGACGGTTGTG
194 CGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CATGTCTAAGCCCCAGC-GAACCGA-GGTTGTG
* * * * * *
20914026 GCAGCCGGACCGACAGCACGTAGAGGGGGACCGAGCTGATCCCCGACTTGCTCATTATGCCTTTT
256 GCAGCGGGACCGACAGCACGCAGAGGGGGACCG-GCCGATCCCTGGCTTGCACATTATGCCTTTT
* * *
20914091 CGACCGGCTCAGCACCCGCACGTTCATTTCGTGGGTTGACTTAGGCTTACAGAGATCATTCCCAG
320 CGGCCGGCTCAGCACCCGCACGTTCGTTTCGTGGGTTGACTTAGGCTTACAGAGTTCATTCCCAG
* * * *
20914156 CCTAAGATCAGATCGGACCTAGGGTTGTGGCAGTAGGATTGACAGCACGTAGGGGGGACCGAGCC
385 TCTAAGATC-GACCGGACCTAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGACCGAGCC
* * * * * *
20914221 AATCCCTGGCTTGCGCACTCTGCCTCTCCAACC-GACTG-GCGGCCGCACGCTCGTTTCATGGGT
449 GATCCCTGGCTTGCACATTCTGCCTCTCCGACCAG-CTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
20914284 TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCG
513 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCA
* *
20914349 GACCGGACTGAGGGTTGC-GACAGCAGGATCGACAGCACGT-AGGGGGGAACGGGCCGATACCCG
578 GACCGGACTAAGGGTTGCAG-CAGCAGGATCGACAGCACGTAAGGAGGGAACGGGCCGATACCCG
* * * * * * *
20914412 GCTTGCGCATTCTGCCTC-TCTGGCCGGTTGAGCACCGGTACGCTCATTTCATGGGTTGGTTTAA
642 ACTTACGCATTCTGCCTCTTC-GACCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAA
*
20914476 GCATACGGAGTTCATTCAATGTCTAAGCCCCAGTCGAA-CTGAGGGTTGTGGTAGCAGGACCGAC
706 GCATAC-GAGTTCATTCAATGTCTAAGCCCCAGTCGAATC-GAGGGTTGTGGCAGCAGGACCGAC
* * * * * * * * *
20914540 AACGGGATCGACAGCACGCAGAAGGGGATCGTGCTGATCCTCGGCTTATGCATTATGCCTCTCTG
769 AACAGGACCGACAACAAGCAGAAGGGGACCGAGCTGATCCCCGACTTACGCATTATGCCTCTCTG
20914605 ATCGGTTG
834 ATCGGTTG
* * * * *
20914613 AGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCATTCTAAGCATA
1 AGCGCCCGCACGCTCATTTCATGGATTGACGTAGGCATACGAAGTTCATCCCCAATCTAAGCATA
* * * *
20914678 CAGAGTTTATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGTGATAGCAGGATCGGTAGCACA
66 CAGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTGCGA-AGCA-G--C---A-CGCA
* * *
20914743 CAGGGGGATCGGGCAGGTCTCC-AGCTTACGCATTCTGCCTCTCTTAGT-GGCTGAGTGCCC-GC
123 -AGGGGGATCGGGCAGATCCCCGA-CTTACGCATTCTGCCTCTC-CA-TCGGCTGAGTGCCCTGC
* * *
20914805 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTGATTCCATGTCTGAGCCCCAGCCAGACC
184 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CATGTCTAAGCCCCAGCGA-ACC
* *
20914870 GAGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGACCGGGCCGATCTCTGGCTTGCACATT
247 GAGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACC-GGCCGATCCCTGGCTTGCACATT
* * * *
20914935 ATGCCTTTTCGGTCGGCTCAGTGA-CCGCACGCTT-GTTTCGTGGGTTGACTTATGCATACAGAG
311 ATGCCTTTTCGGCCGGCTCAG-CACCCGCACG-TTCGTTTCGTGGGTTGACTTAGGCTTACAGAG
* * ** * * *
20914998 TTCATTCCCAGTCTAAGATCGCACCGGACCGAAGGTTGCAGTAGCAAGATCGACAGCACGCAGGG
374 TTCATTCCCAGTCTAAGATCG-ACCGGACCTAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGG
* * * * *
20915063 GGGACCG-GGCGAT-CCTCGACTTGCACATTCTGCCTCTCCGGCCAGCTGAGCACCCGTACGCTC
438 GGGACCGAGCCGATCCCT-GGCTTGCACATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACGCTC
20915126 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
502 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
20915173 CCCAGCCGGA
Statistics
Matches: 1182, Mismatches: 178, Indels: 90
0.82 0.12 0.06
Matches are distributed among these distances:
842 4 0.00
843 131 0.11
844 362 0.31
845 209 0.18
846 6 0.01
847 3 0.00
848 1 0.00
850 1 0.00
851 4 0.00
852 31 0.03
853 222 0.19
854 69 0.06
855 136 0.12
856 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (841 bp):
AGCGCCCGCACGCTCATTTCATGGATTGACGTAGGCATACGAAGTTCATCCCCAATCTAAGCATA
CAGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTGCGAAGCAGCACGCAAGGGGGAT
CGGGCAGATCCCCGACTTACGCATTCTGCCTCTCCATCGGCTGAGTGCCCTGCACGCCCGTTTCG
TGGGTTGGCTTAGGCATAGGGAGTTCATTCATGTCTAAGCCCCAGCGAACCGAGGTTGTGGCAGC
GGGACCGACAGCACGCAGAGGGGGACCGGCCGATCCCTGGCTTGCACATTATGCCTTTTCGGCCG
GCTCAGCACCCGCACGTTCGTTTCGTGGGTTGACTTAGGCTTACAGAGTTCATTCCCAGTCTAAG
ATCGACCGGACCTAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCT
GGCTTGCACATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGGAC
TAAGGGTTGCAGCAGCAGGATCGACAGCACGTAAGGAGGGAACGGGCCGATACCCGACTTACGCA
TTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAAGCATACGAGT
TCATTCAATGTCTAAGCCCCAGTCGAATCGAGGGTTGTGGCAGCAGGACCGACAACAGGACCGAC
AACAAGCAGAAGGGGACCGAGCTGATCCCCGACTTACGCATTATGCCTCTCTGATCGGTTG
Found at i:20914677 original size:26 final size:26
Alignment explanation
Indices: 20914647--20914699 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20914637 GTTGACTTAG
* *
20914647 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20914673 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20914699 G
1 G
20914700 ATCGGACAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20914973 original size:158 final size:156
Alignment explanation
Indices: 20914791--20916013 Score: 560
Period size: 158 Copynumber: 7.4 Consensus size: 156
20914781 CTCTCTTAGT
* * * * *
20914791 GGCTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTGATTCCATGTCTGA
1 GGCTGAGTGACCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
20914856 GCCCCAGCCAGACCGAGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGACCGGGCCGAT-C
66 GCCCCAGCCGGACCGAGGTTGTGGCAGCAGGACCGACAGCACGCAG-AGGGGACCGGG-CGATCC
* * * *
20914920 TCTGGCTTGCACATTATGCCTTTTCGGTC
129 TC-GACTTGCACATTATGCCTCTCCGGCC
* * * * *
20914949 GGCTCAGTGACCGCACGCTTGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTA
1 GGCTGAGTGACCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
* * ** * * * *
20915013 AGATCGCA-CCGGACCGAAGGTTGCAGTAGCAAGATCGACAGCACGCAGGGGGGACCGGGCGATC
65 AG-CCCCAGCCGGACCG-AGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGACCGGGCGATC
*
20915077 CTCGACTTGCACATTCTGCCTCTCCGGCC
128 CTCGACTTGCACATTATGCCTCTCCGGCC
* * *
20915106 AGCTGAG-CACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
1 GGCTGAGTGA-CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* *
20915170 AGCCCCAGCCGGACCAAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGGCAGCACGTAGAGGGG
65 AGCCCCAGCCGGACCGA-GGTTGTGGCAGCAGGA----C--C--GA----CAGCACGCAGA-GGG
* * * * * *
20915235 GACCGAGCTGATCCCCGGCTTGCGCATTATGCCTTTCTGGCC
116 GACCGGGC-GATCCTCGACTTGCACATTATGCCTCTCCGGCC
* * * * *
20915277 GGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTCGGCATACGGAGTTCA-TCCCTAGTCTA
1 GGCTGAGTGACCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTA
** * *** * ** *
20915341 AGCATACGAAGTTCATTCTC-A-GTCTAAGATCGG-A-CTGGACCGAGGGTTACGGCAGCAAGAT
65 AGC---CCCAG-CCGGAC-CGAGGT-T--G-T-GGCAGCAGGACCGACAG-CAC-GCAG--AG--
* * * * **
20915402 CGGTAGCACACAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACC
114 -GG--G-AC-C----GGG-------CGATCCTCGACTTGCACATTATGCCTCTCCGGCC
* * * *
20915461 GACTGAGCG-CCTGCACGCCCGTTTCATGGGTTGGCTTAGGCAT-CGGGAGTTCATTCCATGTCT
1 GGCTGAGTGACC-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GGAGTTCATTCCATGTCT
* * * *
20915524 AAGCCCCAGCCGAACCGAGGGTTGTGGTAGCGGGACC-AGCAGCACACAGAGGGGACCGGGCCGA
64 AAGCCCCAGCCGGACCGA-GGTTGTGGCAGCAGGACCGA-CAGCACGCAGAGGGGACCGGG-CGA
* * ***
20915588 TCCTC-AGCTTGCATATTATGCCTCTTCAATC
126 TCCTCGA-CTTGCACATTATGCCTCTCCGGCC
* * * * * *
20915619 GGCTCAGTGCCCGTACGCTTGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTA
1 GGCTGAGTGACCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
** * * * * * * ** *
20915683 AGATCC-GATCGGACCGATTGTTGTGACAGTAGGATCGACAGCACGCAGGGGGGATTGGTCCGAT
65 AGCCCCAG-CCGGACCGA-GGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGACCGG-GCGAT
* * * * * *
20915747 CCCCGGCTTGCGCATTTTGCCTTTTCGGCC
127 CCTCGACTTGCACATTATGCCTCTCCGGCC
* * * *
20915777 AGCTGAGCG-CTCGCGCGCTCGATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
1 GGCTGAGTGAC-CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * *
20915841 AGCCCCAACCGGA-CGAGGGTTGTGGCAGTAGGATCGGCAGCGGGATCGACAGCATGCAGAGGGG
65 AGCCCCAGCCGGACCGA-GGTTGTGGC------A---GCA---GGACCGACAGCACGCAGA-GGG
* * * *
20915905 GACCAGGCTGATCC-CTGACTTGCGCATTATACCTCTCCGGTC
116 GACCGGGC-GATCCTC-GACTTGCACATTATGCCTCTCCGGCC
** * * * *
20915947 AACTGAGCG-CTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCTAGTCT
1 GGCTGAGTGAC-CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCT
20916010 AAGC
64 AAGC
20916014 ATACGGAGTT
Statistics
Matches: 805, Mismatches: 168, Indels: 172
0.70 0.15 0.15
Matches are distributed among these distances:
156 8 0.01
157 111 0.14
158 265 0.33
159 38 0.05
163 2 0.00
164 4 0.00
165 4 0.00
166 5 0.01
167 1 0.00
168 4 0.00
169 33 0.04
170 105 0.13
171 80 0.10
172 4 0.00
173 4 0.00
174 5 0.01
175 5 0.01
176 6 0.01
177 7 0.01
178 9 0.01
179 9 0.01
180 3 0.00
181 4 0.00
182 2 0.00
183 3 0.00
184 79 0.10
185 5 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (156 bp):
GGCTGAGTGACCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCCCCAGCCGGACCGAGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGACCGGGCGATCCTC
GACTTGCACATTATGCCTCTCCGGCC
Found at i:20915149 original size:157 final size:154
Alignment explanation
Indices: 20914673--20915171 Score: 416
Period size: 157 Copynumber: 3.2 Consensus size: 154
20914663 CCCATTCTAA
* * * * * **
20914673 GCATACAGAGTTTATTCCCA-GTCTAAGATCGGACAGGACCGAGGGTTGTGATAGCAGGATCGGT
1 GCATACAGAGTTCATT-CCATGTCTAAGATCGCACCGGACCGAAGGTTGAG-TAGCAGGATCGAC
* * * * * * ** * **
20914737 AGCACACA-GGGGGATCGGGCAGGTCTCCAGCTTACGCATTCTGCCTCTCTTAGTGGCTGAGTGC
64 AGCACGCAGGGGGGACCGGGC-GATCTCGA-CTTGCACATTCTGCCTCTC-CGGCGGCTGAGCAC
*
20914801 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
126 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * * * * * * * *
20914830 GCATAGGGAGTTGATTCCATGTCTGAG-CCCCAGCCAGACCG-AGGTTGTGGCAGCGGGACCGAC
1 GCATACAGAGTTCATTCCATGTCTAAGATCGCA-CCGGACCGAAGGTTG-AGTAGCAGGATCGAC
* * * * * * *
20914893 AGCACGCAGAAGGGGACCGGGCCGATCTCTGGCTTGCACATTATGCCTTTTCGGTCGGCTCAGTG
64 AGCACGCAG-GGGGGACCGGG-CGATCTC-GACTTGCACATTCTGCCTCTCCGG-CGGCTGAG-C
* * *
20914958 A-CCGCACGCTTGTTTCGTGGGTTGACTTAT
124 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
20914988 GCATACAGAGTTCATTCCCA-GTCTAAGATCGCACCGGACCGAAGGTTGCAGTAGCAAGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCGCACCGGACCGAAGGTTG-AGTAGCAGGATCGAC
*
20915052 AGCACGCAGGGGGGACCGGGCGATCCTCGACTTGCACATTCTGCCTCTCCGGCCAGCTGAGCACC
64 AGCACGCAGGGGGGACCGGGCGAT-CTCGACTTGCACATTCTGCCTCTCCGG-CGGCTGAGCACC
*
20915117 CGTACGCTCGTTTCGTGGGTTGGCTTAG
127 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
20915145 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
20915172 CCCCAGCCGG
Statistics
Matches: 263, Mismatches: 64, Indels: 30
0.74 0.18 0.08
Matches are distributed among these distances:
156 29 0.11
157 104 0.40
158 98 0.37
159 32 0.12
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (154 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCGCACCGGACCGAAGGTTGAGTAGCAGGATCGACAG
CACGCAGGGGGGACCGGGCGATCTCGACTTGCACATTCTGCCTCTCCGGCGGCTGAGCACCCGCA
CGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20915663 original size:670 final size:670
Alignment explanation
Indices: 20914318--20916614 Score: 2747
Period size: 670 Copynumber: 3.4 Consensus size: 670
20914308 CCATGTCTAA
* * * * *
20914318 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGACTGAGGGTTGC-GACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGCACCGGACCGAAGGTTGCAG-TAGCAGGATCGAC
* * * * * * * *
20914382 AGCACGTAGGGGGGAACGGGCCGATACCCGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCAC
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGCCAGCTGAGCAC
* * * * * * *
20914447 CGGTACGCTCATTTCATGGGTTGGTTTAAGCATACGGAGTTCATTCAATGTCTAAGCCCCAGTCG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * * * * * *
20914512 AACTGAGGGTTGTGGTAGCAGGACCGACAACGGGATCGACAGCACGCAGAAGGGGATCGTGCTGA
195 GACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGAGCTGA
* ** * * * *
20914577 TCCTCGGCTTATGCATTATGCCTCTCTGATCGGTTGAGCGCCCGCATGCTCATTTCATGGGTTGA
260 TCCCCGGCTTGCGCATTATGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
* * *
20914642 CTTAGGCATACGGAGTTCATCCCCATTCTAAGCATAC-AGAGTTTATTCCCAGTCTAAGATCGGA
325 CTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCGGA
* * * * *
20914706 CAGGACCGAGGGTTGTGATAGCAGGATCGGTAGCACACAGGGGGATCGGGCAGGTCTCCAGCTTA
389 CAGGACCGAGGGTTGCGATAGCAGGATCGGTAGCACACAGGGGGATCGGGCCGATCCCCGGCTTA
** ** *
20914771 CGCATTCTGCCTCTCTTAGTGGCTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
454 CGCATTCTGCCTCTCCAACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
* *
20914836 GGAGTTGATTCCATGTCTGAGCCCCAGCC-AGACCGA-GGTTGTGGCAGCGGGACCGACAGCACG
519 GGAGTTCATTCCATGTCTAAGCCCCAGCCGA-ACCGAGGGTTGTGGCAGCGGGACCGACAGCACG
* *
20914899 CAGAAGGGGACCGGGCCGAT-CTCTGGCTTGCACATTATGCCTTTTCGGTCGGCTCAGTGACCGC
583 CAG-AGGGGACCGGGCCGATCCTC-GGCTTGCACATTATGCCTTTTCGATCGGCTCAGTGACCGA
20914963 ACGCTTGTTTCGTGGGTTGACTTAT
646 ACGCTTGTTTCGTGGGTTGACTTAT
* *
20914988 GCATACAGAGTTCATTCCCAGTCTAAGATCGCACCGGACCGAAGGTTGCAGTAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGCACCGGACCGAAGGTTGCAGTAGCAGGATCGACA
*
20915053 GCACGCAGGGGGGACCGGG-CGATCCTCGACTTGCACATTCTGCCTCTCCGGCCAGCTGAGCACC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGCCAGCTGAGCACC
* *
20915117 CGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
131 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * *
20915182 ACCAAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGGCAGCACGTAGAGGGGGACCGAGCTGAT
196 ACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGAGCTGAT
* * *
20915247 CCCCGGCTTGCGCATTATGCCTTTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGAC
261 CCCCGGCTTGCGCATTATGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
* * *
20915312 TTCGGCATACGGAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCTCAGTCTAAGATCGGACT
326 TTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACA
* ** * *
20915377 GGACCGAGGGTTACGGCAGCAAGATCGGTAGCACACAAGGGGGATCGGGCCGATCCCCGGCTTGC
391 GGACCGAGGGTTGCGATAGCAGGATCGGTAGCACAC-AGGGGGATCGGGCCGATCCCCGGCTTAC
* * * *
20915442 GCATTCTGCCTCTCCAACCGACTGAGCGCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATCGG
455 GCATTCTGCCTCTCCAACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
* *
20915507 GAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGTAGCGGGACC-AGCAGCACAC
520 GAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCGGGACCGA-CAGCACGC
* * * * * *
20915571 AGAGGGGACCGGGCCGATCCTCAGCTTGCATATTATGCCTCTTCAATCGGCTCAGTGCCCGTACG
584 AGAGGGGACCGGGCCGATCCTCGGCTTGCACATTATGCCTTTTCGATCGGCTCAGTGACCGAACG
20915636 CTTGTTTCGTGGGTTGACTTAT
649 CTTGTTTCGTGGGTTGACTTAT
* ** * * *
20915658 GCATACGGAGTTCATTCCCAGTCTAAGATC-CGATCGGACCGATTGTTG-TGACAGTAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGC-ACCGGACCGAAGGTTGCAG-TAGCAGGATCGA
** * * * * * * *
20915721 CAGCACGCAGGGGGGATTGGTCCGATCCCCGGCTTGCGCATTTTGCCTTTTCGGCCAGCTGAGCG
64 CAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGCCAGCTGAGCA
* * * * *
20915786 CTCGCGCGCTCGATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACC
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * *
20915851 GGA-CGAGGGTTGTGGCAGTAGGATCGGCAGCGGGATCGACAGCATGCAGAGGGGGACC-AGGCT
194 GGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGA-GCT
* * * * ** * * *
20915914 GATCCCTGACTTGCGCATTATACCTCTCCGGTCAACTGAGCGCTCGTACGCTCGTTTCGTGGGTT
258 GATCCCCGGCTTGCGCATTATGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* * *
20915979 GACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAACAG
323 GACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGG
* * * **
20916044 ACCA-GATCGAGGGTTGCGTTAGTAGGATCGGTAGCACGTA-GGGGATACCGGGCCGATCCCCGG
388 A-CAGGACCGAGGGTTGCGATAGCAGGATCGGTAGCACACAGGGGGAT--CGGGCCGATCCCCGG
* *** * * * * *
20916107 CTTACGCATTCTGCCCCTCCGGTCGGCTAAGCACCCGCACACCCGTTTCGTGCGTTGGCTTAGGG
450 CTTACGCATTCTGCCTCTCCAACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGC
* * * *
20916172 ATAGGGAGTTCATTCCATGTCTAAGCGCCAGCCGGATCGAGGGTTGTGGCAGCGGGACCGACAGT
515 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCGGGACCGACAGC
* * * * *
20916237 ACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTTTTCGACCGGCTCAATGTCT
580 ACGCAGA-GGGGACCGGGCCGATCCTCGGCTTGCACATTATGCCTTTTCGATCGGCTCAGTGACC
* ** *
20916302 GAACACTCATTTCATGGGTTGACTTAT
644 GAACGCTTGTTTCGTGGGTTGACTTAT
* * ** * * *** * * *
20916329 GCATATGGAGTTCATTGCCAGTCTAAGATCAAATCGGATC-AAGGGTTATGGTAGTAGGACCTAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGCACCGGACCGAA-GGTTGCAGTAGCAGGATCGAC
* * * * * *
20916393 AGCACGCAGGGGGGACCGGGCCGATCCCCGACATGCACATTCTACCTCTCCAGTCGGCTTA-CTA
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGCCAGCTGAGC-A
* * * *
20916457 CCCACACGCTCGTTTCATGGGTTGGCTCAGGCATACGGAGTTTATTCCATGTCTAAG-CCCAGGT
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA-GC
* * * * * * *
20916521 CGGATCGAGGGTTGTGGTAGCAAGACCGGTAGCGGGATTGACAGCATGCAGAGGGGGACCGGGCT
193 CGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGAGCT
*
20916586 GATCCCCGGCTTG-ACATTATGCCTCTCTG
258 GATCCCCGGCTTGCGCATTATGCCTCTCTG
20916615 ACTGGCCTCT
Statistics
Matches: 1388, Mismatches: 216, Indels: 45
0.84 0.13 0.03
Matches are distributed among these distances:
668 6 0.00
669 297 0.21
670 657 0.47
671 364 0.26
672 64 0.05
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (670 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGCACCGGACCGAAGGTTGCAGTAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGCCAGCTGAGCACC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
ACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGAGCTGAT
CCCCGGCTTGCGCATTATGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
TTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACA
GGACCGAGGGTTGCGATAGCAGGATCGGTAGCACACAGGGGGATCGGGCCGATCCCCGGCTTACG
CATTCTGCCTCTCCAACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
AGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAG
AGGGGACCGGGCCGATCCTCGGCTTGCACATTATGCCTTTTCGATCGGCTCAGTGACCGAACGCT
TGTTTCGTGGGTTGACTTAT
Found at i:20916015 original size:26 final size:26
Alignment explanation
Indices: 20915986--20916038 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20915976 GTTGACTTAG
20915986 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
20916012 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20916038 G
1 G
20916039 AACAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20917856 original size:26 final size:26
Alignment explanation
Indices: 20917826--20917878 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20917816 GTTGACTTGG
20917826 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
* *
20917852 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20917878 G
1 G
20917879 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20918377 original size:26 final size:26
Alignment explanation
Indices: 20918326--20918378 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20918316 GTTGGCTTAG
*
20918326 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGACTAA
*
20918352 GCATACGGAGTTCATTCCCA-GACTAA
1 GCATACAGAGTTCATT-CCATGACTAA
20918378 G
1 G
20918379 ATAGGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGACTAA
Found at i:20918705 original size:158 final size:159
Alignment explanation
Indices: 20918457--20918761 Score: 413
Period size: 158 Copynumber: 1.9 Consensus size: 159
20918447 GCCGATCGTC
* * * * * *
20918457 GGCTTGCGCATTCTGCCTCTCTGGCTGATTGAGCGCACGCACGCTCGTTTCGTGGGTTGACTTAG
1 GGCTTGCGCATTCTGCCTCTCTGGCCGACTGAACGCACACACGCTCATTTCATGGGTTGACTTAG
* * **
20918522 GCATACGGAGTTCATTCTATCTCTAAGCCCCAGACAGACCGAGGGTTGTGGCAGCAGGA-TTGAC
66 GCATACGGAGTTCATTCCATCTCTAAGCCCAAGACAGACCGAGGGTTGTGGCAGCAGGACCAG-C
20918586 AGCACGTAG-GGGGGACCTAGCTGATCCCT
130 AGCACGTAGAGGGGGACCTAGCTGATCCCT
* *
20918615 GGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAACGC-CTACACG-TCCATTTCATGGGTTGGCTT
1 GGCTTGCGCATTCTGCCTCTCTGGCCGACTGAACGCAC-ACACGCT-CATTTCATGGGTTGACTT
* *
20918678 AGGCATA-GAGAGTTCATTCCATGTCTAAGCCCAAGCCAGACCGAGGGTTGTGGCAGCAGGACCA
64 AGGCATACG-GAGTTCATTCCATCTCTAAGCCCAAGACAGACCGAGGGTTGTGGCAGCAGGACCA
20918742 GCAGCACGTAGAGGGGGACC
128 GCAGCACGTAGAGGGGGACC
20918762 GGGCCGATCT
Statistics
Matches: 128, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
157 3 0.02
158 116 0.91
159 9 0.07
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GGCTTGCGCATTCTGCCTCTCTGGCCGACTGAACGCACACACGCTCATTTCATGGGTTGACTTAG
GCATACGGAGTTCATTCCATCTCTAAGCCCAAGACAGACCGAGGGTTGTGGCAGCAGGACCAGCA
GCACGTAGAGGGGGACCTAGCTGATCCCT
Found at i:20920300 original size:26 final size:26
Alignment explanation
Indices: 20920266--20920317 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20920256 TTGACTTAGA
20920266 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
*
20920292 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
20920318 ATCATCTGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:20920497 original size:26 final size:26
Alignment explanation
Indices: 20920447--20920499 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20920437 GTTGGCTTAG
*
20920447 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCATGTCTAA
20920473 GCATACGGAGTTCATCCCTAT-TCTAA
1 GCATACGGAGTTCATCCC-ATGTCTAA
20920499 G
1 G
20920500 ATCAAATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATGTCTAA
Found at i:20920685 original size:26 final size:26
Alignment explanation
Indices: 20920655--20920707 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20920645 GTTGACTTAG
*
20920655 GCATACGGAGTTC-ATCCCCAGTATAA
1 GCATACAGAGTTCAAT-CCCAGTATAA
* *
20920681 GCATATAGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTATAA
20920707 G
1 G
20920708 ATCAAACAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTATAA
Found at i:20921780 original size:26 final size:26
Alignment explanation
Indices: 20921751--20921803 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20921741 GTTGACTTAG
20921751 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20921777 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20921803 G
1 G
20921804 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20922876 original size:26 final size:26
Alignment explanation
Indices: 20922827--20922879 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20922817 GTTGGCTTAG
*
20922827 GCATACGAAGTTCATTCTATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
*
20922853 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCATT-CCATGTCTAA
20922879 G
1 G
20922880 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:20929751 original size:159 final size:158
Alignment explanation
Indices: 20929484--20929953 Score: 568
Period size: 158 Copynumber: 3.0 Consensus size: 158
20929474 AAGATCAGAC
* * *
20929484 CGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTG
1 CGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGACCGATCCCCGGCTTG
* * * * *
20929549 TGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAG
66 CGCATTCTGCCTCTCCGGCTAGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* *
20929614 GGAGTTTATTCCATGTCTAAGCCCTAGT
131 GGAGTTTATTCCATGTCTAAGCACTAGA
* * *
20929642 CGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGAGGGACCGGACCGATCCCTGGCTT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAG-GGGGGACCGGACCGATCCCCGGCTT
* * * * * **
20929707 GCGCATTATGCCTCTCCGGCTAGCTCAGCGCTCGTACGCTCGTTTTGTGGGTTGACTTAGGTGTA
65 GCGCATTCTGCCTCTCCGGCTAGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* * * *
20929772 CGGAGTTTATTCCCA-ATATAAG-ATTGGA
130 CGGAGTTTATT-CCATGTCTAAGCACTAGA
* * * **
20929800 CTAGACTGAGGGTTGTGGTAGCAGGATCAACAGCACGCAGGGGGGACC-GAGCCGATCCCCGGCT
1 C-GGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGA-CCGATCCCCGGCT
* * *
20929864 TACGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
64 TGCGCATTCTGCCTCTCCGGCTAGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCAT
* * *
20929929 ACGTAGTTCATTCAATGTCTAAGCA
129 ACGGAGTTTATTCCATGTCTAAGCA
20929954 TACGGAGTTC
Statistics
Matches: 259, Mismatches: 47, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
157 4 0.02
158 129 0.50
159 123 0.47
160 3 0.01
ACGTcount: A:0.17, C:0.27, G:0.33, T:0.23
Consensus pattern (158 bp):
CGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGACCGATCCCCGGCTTG
CGCATTCTGCCTCTCCGGCTAGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
GGAGTTTATTCCATGTCTAAGCACTAGA
Found at i:20930799 original size:25 final size:25
Alignment explanation
Indices: 20930770--20930820 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
20930760 GTTGGCTTAG
20930770 GCATACAGAGTTCAT-TCATGTCTAA
1 GCATACAGAGTTCATCTCA-GTCTAA
* *
20930795 GCATACGGAGTTCTTCTCAGTCTAA
1 GCATACAGAGTTCATCTCAGTCTAA
20930820 G
1 G
20930821 ATCGACCGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 20 0.87
26 3 0.13
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (25 bp):
GCATACAGAGTTCATCTCAGTCTAA
Found at i:20931174 original size:26 final size:26
Alignment explanation
Indices: 20931122--20931174 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20931112 GTTGACTTAG
* *
20931122 GCATACAGAGTTCATCCCTATTGTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
*
20931148 GCATATAGAGTTCATTCCC-AGTCTAA
1 GCATACAGAGTTCA-TCCCTAGTCTAA
20931174 G
1 G
20931175 ATCGAACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:20931678 original size:159 final size:158
Alignment explanation
Indices: 20931288--20931684 Score: 397
Period size: 159 Copynumber: 2.5 Consensus size: 158
20931278 GCACGCCCTG
* * * * *
20931288 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTGATTCCATGTCTGAGCCCTAGCCAGACCGAAGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC-AAGGTT
** ** *
20931353 GTGGCAGCGGGACCAACAGCACGTAGAAGGGGACCGGGTCGATCTCCGGCTTGCACATTATGCCT
65 GTGGCAGCAAGACCAACAGCACACAGAAGGGGACCGGGTCGATCTCCGACTTGCACATTATGCCT
* * * * * **
20931418 TTCCGATCGGCTCAGTGACCGTATGCTTG
130 CTCCGACCAGCTCAGTCACCGTACGCTCA
* * * * *
20931447 TTTCGTGGGTTGACTTATGCATACAGAGTTCATTCC-TAGTCTAAGATCGCA-CCGGACCAAAGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAG-CCCCAGCCGGACC-AAGG
** * * ** *
20931510 TTGCAGCAGCAAGATCGACAGCACACAGGGGGGGACCGGGTCGATC-CTCGACTTGCACATTCTG
63 TTGTGGCAGCAAGACCAACAGCACACAGAAGGGGACCGGGTCGATCTC-CGACTTGCACATTATG
* * *
20931574 CCTCTCTGGCCAGCTGAG-CACCCGTACGCTCA
127 CCTCTCCGACCAGCTCAGTCA-CCGTACGCTCA
*
20931606 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTGTAAGCCCCAGCCGGACCAAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAA-GGTT
*
20931671 GTGGCAGCAGGACC
65 GTGGCAGCAAGACC
20931685 GGCAGCGGGA
Statistics
Matches: 188, Mismatches: 43, Indels: 14
0.77 0.18 0.06
Matches are distributed among these distances:
158 8 0.04
159 177 0.94
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGTTG
TGGCAGCAAGACCAACAGCACACAGAAGGGGACCGGGTCGATCTCCGACTTGCACATTATGCCTC
TCCGACCAGCTCAGTCACCGTACGCTCA
Found at i:20931826 original size:26 final size:26
Alignment explanation
Indices: 20931796--20931847 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20931786 TTGACTTCAA
*
20931796 CATACGGAGTTCA-TCCCTAGTCTAAG
1 CATACGAAGTTCATTCCC-AGTCTAAG
20931822 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
20931848 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:20932332 original size:158 final size:158
Alignment explanation
Indices: 20931961--20932967 Score: 393
Period size: 158 Copynumber: 6.3 Consensus size: 158
20931951 GCACACCCAT
* *
20931961 TTCGTGGGTTGGCTTAGGCAT-CGAGAGTTCATT-TCATGTCTAAGCCCCAGTCGAACCGAGGGT
1 TTCGTGGGTTGGCTTAGGCATACG-GAGTTCATTCT-ATGTCTAAGCCCCAATCGGACCGAGGGT
* * *
20932024 TGTGGTAGCGGGACCAGCAGCACACAGAGGGGATCGGGCCGATCCTCAGCTTGCGCATTATGCCT
64 TGTGATAGCAGGACCAGCAGCACACAGAGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCT
* * * * * *
20932089 CTTAGGTCGGCTCAGTGCCCGTACGCTTGT
129 CTTAGGCCAGCTCAGCGCCCGCACGCTCGA
* * * * ** * **
20932119 TTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCCGATCGGACCGATTGTT
1 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CTATGTCTAAGCCCCAATCGGACCGAGGGTT
* * * * * * *
20932183 GTGATAGTAGGATC-GACAGCACGCA-AGGGGGATTGGTCCGATCCCC-GACTTGGGCATTTTGC
65 GTGATAGCAGGACCAG-CAGCACACAGA-GGGGATCGGGCCGATCCCCAG-CTTGCGCATTATGC
* * * *
20932245 CTTTTAGGCCAGCTGAGCGCTCGCGCGCTCGA
127 CTCTTAGGCCAGCTCAGCGCCCGCACGCTCGA
*
20932277 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCCCCAACCGGACCGAGGGTTG
1 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCCCCAATCGGACCGAGGGTTG
* * * * *
20932342 T-AGTAGCAGGATCGGCAGCGGGATCAACAGCATGCAAAGGGGGACCAGGCTGAT-CCCTGACTT
66 TGA-TAGCAGGA-C--CAGC---AGC-ACA-CA-G---A-GGGGATCGGGCCGATCCCCAG-CTT
* * * * * * *
20932405 GCGCATTATACCTCTCT-GGTCAACTGAGCGCTCGTACGCTCGT
116 GCGCATTATGCCTCT-TAGGCCAGCTCAGCGCCCGCACGCTCGA
* * * ** * * *
20932448 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGACCAGATCGAGGGT
1 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CTATGTCTAAGCCCCA-ATCGGACCGAGGGT
* * * * * * * * *
20932511 TGCG-TCAGTAGGATCGGTAGCACGC--AGGGGATACCGGGCCGATCCCCGGCTTACGCATTCTG
64 TGTGAT-AGCAGGACCAGCAGCACACAGAGGGGAT--CGGGCCGATCCCCAGCTTGCGCATTATG
* ** ** * * * * * *
20932573 CCCCTCCGATCGGCTAAGCACCCGCACACCCGT
126 CCTCTTAGGCCAGCTCAGCGCCCGCACGCTCGA
* * * * * * ** *
20932606 TTCATGCGTTGGCTTAGGGATAGGGAGTTCATTCCATGTCTAAGCGCCAGCCGGATCGAGGGTTG
1 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCCCCAATCGGACCGAGGGTTG
** * * * * * * * * *
20932671 TGGCAGCGGGACC-GATAGTACGCAGAGGGGGTTGGGTCGATCCCCGGCTTGCGCATTATGCCTT
66 TGATAGCAGGACCAG-CAGCACACAGAGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTC
* * * * * * *
20932735 TTCGGTCGGCTCAACGTCCGAACACTC-A
130 TTAGGCCAGCTCAGCGCCCGCACGCTCGA
* * * * * ** * *
20932763 TTTCATGGGTTGACTTATGCATACGGAGTTCATTGCCA-ATCTAAG-ATCAGATCGGATCAAGGG
1 -TTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CTATGTCTAAGCCCCA-ATCGGACCGAGGG
* ** * * * * * * * * * *
20932826 TTATGGCAGTAGGATCTA-CAGCACGCAGGGGGGACCGGGCCGAT-CCCTGACATGCACATTCTA
63 TTGTGATAGCAGGA-CCAGCAGCACACAGAGGGGATCGGGCCGATCCCCAG-CTTGCGCATTATG
* * * * *
20932889 CCTCTCCA-GCCGGCTTA-CTACCCGCACGCTCGT
126 CCTCT-TAGGCCAGCTCAGC-GCCCGCACGCTCGA
* *
20932922 TTCGTGGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAGCC
1 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCC
20932968 TAGGCCGGAC
Statistics
Matches: 634, Mismatches: 166, Indels: 97
0.71 0.19 0.11
Matches are distributed among these distances:
156 5 0.01
157 21 0.03
158 457 0.72
159 13 0.02
160 6 0.01
161 2 0.00
162 1 0.00
163 1 0.00
164 4 0.01
165 4 0.01
166 2 0.00
168 2 0.00
170 6 0.01
171 107 0.17
172 3 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCCCCAATCGGACCGAGGGTTG
TGATAGCAGGACCAGCAGCACACAGAGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCT
TAGGCCAGCTCAGCGCCCGCACGCTCGA
Found at i:20932984 original size:316 final size:314
Alignment explanation
Indices: 20931821--20933345 Score: 1086
Period size: 316 Copynumber: 4.8 Consensus size: 314
20931811 CCTAGTCTAA
* * * ** ** * * **
20931821 GCATACGAAGTTCATTCCCAGTCTAAGATC-GAACTGGATCGAGGGTTACGGTAGCAAGATCGGT
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGATC-GGATCGAGGGTTGTGACAGTAGGATCGAC
* * * * * * * * *
20931885 AGCACACAAGGGGGACCAGGCCGATCCCCGGCTTGC-AATTCTGCCTCTCCAACCGACTGAGCGC
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTAAGCAC
* * * * * *
20931949 CTGCACACCCATTTCGTGGGTTGGCTTAGGCAT-CGAGAGTTCATTTCATGTCTAAGCCCCAGTC
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG-GAGTTCATTCCATGTCTAAGCCCCAGCC
* * * * * * *
20932013 GAACCGAGGGTTGTGGTAGCGGGACC-AGCAGCACACAGAGGGGATCGGGCCGATCCTCAGCTTG
194 GGACCGAGGGTTGTGGCAGCGGGACCGA-TAGCACGCAGAGGGGGTCGGG-CGATCCCCGGCTTG
* * * * *
20932077 CGCATTATGCCTCTTAGGTCGGCTCAGTGCCCGTACGCTTGTTTTGTGGGTTGACTTAT
257 CGCATTATGCCTTTTCGGTCGGCTCAGCG-CCGTACGCTCGTTTCGTGGGTTGACTTAT
* * * ** *
20932136 GCATACGGAGTTCATTCCCAGTCTAAGATCCGATCGGACCGATTGTTGTGATAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGTGACAGTAGGATCGACA
* ** * * * ** * * *
20932201 GCACGCAAGGGGGATTGGTCCGATCCCCGACTTGGGCATTTTGCCT-TTTAGGCCAGCTGAGCGC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCA-GCCGGCTAAGCAC
* * * * *
20932265 TCGCGCGCTCGATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCCCCAACCG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * * * *
20932330 GACCGAGGGTTGTAGTAGCAGGATCGGCAGCGGGATCAACAGCATGCAAAGGGGGACCAGGCTGA
195 GACCGAGGGTTGT-G--GCA-G--CGGGA-C-CGAT----AGCACGCAGAGGGGG-TCGGGC-GA
* * * * ** *
20932395 TCCCTGACTTGCGCATTATACC-TCTCTGGTCAACTGAGCGCTCGTACGCTCGTTTCGTGGGTTG
246 TCCCCGGCTTGCGCATTATGCCTTTTC-GGTCGGCTCAGCGC-CGTACGCTCGTTTCGTGGGTTG
*
20932459 ACTTAG
309 ACTTAT
* * * * **
20932465 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTGCGTCAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGTGACAGTAGGATCGACA
** * * * *
20932530 GCACGCAGGGGATACCGGGCCGATCCCCGGCTTACGCATTCTGCCCCTCC-GATCGGCTAAGCAC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAG-CCGGCTAAGCAC
* * * * * * *
20932594 CCGCACACCCGTTTCATGCGTTGGCTTAGGGATAGGGAGTTCATTCCATGTCTAAGCGCCAGCCG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * *
20932659 GATCGAGGGTTGTGGCAGCGGGACCGATAGTACGCAGAGGGGGTTGGGTCGATCCCCGGCTTGCG
195 GACCGAGGGTTGTGGCAGCGGGACCGATAGCACGCAGAGGGGGTCGGG-CGATCCCCGGCTTGCG
* * * * *
20932724 CATTATGCCTTTTCGGTCGGCTCAACGTCCGAACACTCATTTCATGGGTTGACTTAT
259 CATTATGCCTTTTCGGTCGGCTCAGCG-CCGTACGCTCGTTTCGTGGGTTGACTTAT
* * * * *
20932781 GCATACGGAGTTCATTGCCAATCTAAGATCAGATCGGATCAAGGGTTATGGCAGTAGGATCTACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGTGACAGTAGGATCGACA
* * * * *
20932846 GCACGCAGGGGGGACCGGGCCGATCCCTGACATGCACATTCTACCTCTCCAGCCGGCTTA-CTAC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTAAGC-AC
* *
20932910 CCGCACGCTCGTTTCGTGGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAG-CCTAGGCC
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA-GCC
** * * * *
20932974 GGACCGAGGGTTGTGGTAGTAAGACCGGTAGCGGGATTGATAGCATGCATAGGGGGACCGAGCTG
194 GGACCGAGGG-T-T-GT-G---G--C---AGCGGGACCGATAGCACGCAGAGGGGG-TCGGGC-G
* * * * * * * *** * **
20933039 ATCCCCGGCTTG-ACATTATGCC-TCTCTGACTGGCCTC-GC-CTGT-CGGTTGAGCACCTACAC
245 ATCCCCGGCTTGCGCATTATGCCTTTTCGGTC-GG-CTCAGCGCCGTACGCTCG-TTTCGT--GG
* * * *
20933099 GCTCAGTCTAA
305 GTTGACT-TAT
* * * * *
20933110 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTG-CAGCAGCAGGATC-AG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGTGA-CAGTAGGATCGA-
* ** * * * * *
20933173 CAGCACGCA-GGGGGACCAGGCCGATCTTCGGCTTGCGCATTCTTCCTCTCCGGCCGACTGAGCA
64 CAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTAAGCA
* * * * * *
20933237 CCCGCACGCCCGTTTCGTGGATTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCTAGTC
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
*
20933302 GGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGG
194 GGACCGAGGGTTGTGGCAGCGGGACCGATAGCACGCAGAGGGGG
20933346 ACCGGATCGA
Statistics
Matches: 940, Mismatches: 217, Indels: 105
0.74 0.17 0.08
Matches are distributed among these distances:
315 82 0.09
316 326 0.35
317 22 0.02
318 1 0.00
319 5 0.01
320 2 0.00
321 4 0.00
322 5 0.01
323 6 0.01
324 1 0.00
325 7 0.01
326 8 0.01
327 6 0.01
328 162 0.17
329 302 0.32
330 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (314 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGTGACAGTAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTAAGCACC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
ACCGAGGGTTGTGGCAGCGGGACCGATAGCACGCAGAGGGGGTCGGGCGATCCCCGGCTTGCGCA
TTATGCCTTTTCGGTCGGCTCAGCGCCGTACGCTCGTTTCGTGGGTTGACTTAT
Found at i:20932985 original size:158 final size:156
Alignment explanation
Indices: 20932443--20932956 Score: 478
Period size: 158 Copynumber: 3.3 Consensus size: 156
20932433 CGCTCGTACG
* *
20932443 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAG
1 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAG
* * * ** *
20932508 GGTTGCGTCAGTAGGATCGGTAGCACGCAGGGGATACCGGGCCGATCCCCGGCTTACGCATTCTG
66 GGTTGTGGCAGTAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTG
* *
20932573 CCCCTCCGATCGGCTAAGCACCCGCACA
131 CCTCTCCG-TCGGCTTA-CACCCGCACA
* * * * * * **
20932601 CCCGTTTCATGCGTTGGCTTAGGGATAGGGAGTTCATT-CCATGTCTAAGCGCCAG-CCGGATCG
1 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGACCGGATCG
** * * ** *
20932664 AGGGTTGTGGCAGCGGGACCGATAGTACGCAGAGGGGG-TTGGGTCGATCCCCGGCTTGCGCATT
64 AGGGTTGTGGCAGTAGGATCGATAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATT
* * * * *
20932728 ATGCCTTTTCGGTCGGCTCA-ACGTCCGAACA
128 CTGCC-TCTCCGTCGGCTTACAC--CCGCACA
* * * * *
20932759 CTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTGCCAATCTAAGATCAGATCGGATCAAG
1 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAG
* * * * * * * *
20932824 GGTTATGGCAGTAGGATCTACAGCACGCAGGGGGGACCGGGCCGATCCCTGACATGCACATTCTA
66 GGTTGTGGCAGTAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTG
* *
20932889 CCTCTCCAGCCGGCTTACTACCCGCACG
131 CCTCTCC-GTCGGCTTAC-ACCCGCACA
* * *
20932917 CTCGTTTCGTGGGTTGGCTCAGGCATACGGAGTTCATTCC
1 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
20932957 ATGTCTAAGC
Statistics
Matches: 275, Mismatches: 69, Indels: 24
0.75 0.19 0.07
Matches are distributed among these distances:
156 2 0.01
157 14 0.05
158 245 0.89
159 12 0.04
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAG
GGTTGTGGCAGTAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTG
CCTCTCCGTCGGCTTACACCCGCACA
Found at i:20933152 original size:645 final size:644
Alignment explanation
Indices: 20931145--20933376 Score: 2198
Period size: 645 Copynumber: 3.4 Consensus size: 644
20931135 ATCCCTATTG
* * * * *
20931145 TAAGCATATAGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTG-TGATAGCAGGATT
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCAG-TAGCAGGATC
* * * * * ** *
20931209 GGTAGCACACAGGGGGATCGGGCAGGTCTCCGGCTTACGCATTCTGCCTCTCCTG-GTGGCTGAG
65 GGTAGCACACAGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCC-GACCGACTGAG
** * * *
20931273 TGCCCGCACGCCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTGATTCCATGTCTGAGCCCTA
129 CACCCGCACACCC-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTA
* * * * * *
20931338 GCCAGACCGAAGGTTGTGGCAGCGGGACCAACAGCACGTAGAAGGGGACCGGGTCGATCTCCGGC
193 GCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAG-AGGGGATCGGGTCGATCCCCGGC
* * * *
20931403 TTGCACATTATGCCTTTCCGATCGGCTCAGTGACCGTATGCTTGTTTCGTGGGTTGACTTATGCA
257 TTGCGCATTATGCCTTTTCGGTCGGCTCAGTGACCGTACGCTTGTTTCGTGGGTTGACTTATGCA
* * ** * *
20931468 TACAGAGTTCATTCCTAGTCTAAGATCGCACCGGACCAAAGGTTGCAGCAGCAAGATCGACAGCA
322 TACGGAGTTCATTCC-AGTCTAAGATCG-ATCGGACCAAAGGTTGTGGCAGTAGGATCGACAGCA
* * *
20931533 CACAGGGGGGGACCGGGTCGAT-CCTCGACTTGCACATTCTGCCTCTCTGGCCAGCTGAGCACCC
385 CGCA-GGGGGGACCGGGCCGATCCCT-GACTTGCACATTCTGCCTCTCTAGCCAGCTGAGCACCC
* * *
20931597 GTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTGTAAGCCCCAGCCGGA
448 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
* * * * *
20931662 CCAAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGTAGAGGGGGACCGAGCTGATC
513 CCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGACAGCATGCAAAGGGGGACCGAGCTGATC
* **
20931727 CCCAGCTTGCGCATTATGCCTTTCTGGCTGGTTGAGTGCC-CGCACGCTCGTTTCATGGGTTGAC
578 CCCGGCTTGCGCATTATGCC--TCT--CTGACTGA--GCCTCG-AC-CT-G-TTC---GGTTGA-
20931791 TTCAACATACGGAGTTCATCCCTAGTC
629 --C-ACATAC--AG--C-T--C-AGTC
* * * *
20931818 TAAGCATAC-GAAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTACGGTAGCAAGATC
1 TAAGCATACAG-AGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCAGTAGCAGGATC
*
20931882 GGTAGCACACAAGGGGGACCAGGCCGATCCCCGGCTT--GCAATTCTGCCTCTCCAACCGACTGA
65 GGTAGCACAC-AGGGGGACCAGGCCGATCCCCGGCTTACGC-ATTCTGCCTCTCCGACCGACTGA
* * * * * * *
20931945 GCGCCTGCACACCCATTTCGTGGGTTGGCTTAGGCATCGAGAGTTCATTTCATGTCTAAGCCCCA
128 GCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTA
* * * * * * *
20932010 GTCGAACCGAGGGTTGTGGTAGCGGGACC-AGCAGCACACAGAGGGGATCGGGCCGATCCTCAGC
193 GCCGGACCGAGGGTTGTGGCAGCGGGACCGA-CAGCACGCAGAGGGGATCGGGTCGATCCCCGGC
* * * *
20932074 TTGCGCATTATGCCTCTTAGGTCGGCTCAGTGCCCGTACGCTTGTTTTGTGGGTTGACTTATGCA
257 TTGCGCATTATGCCTTTTCGGTCGGCTCAGTGACCGTACGCTTGTTTCGTGGGTTGACTTATGCA
* ** **
20932139 TACGGAGTTCATTCCCAGTCTAAGATCCGATCGGACCGATTGTTGTGATAGTAGGATCGACAGCA
322 TACGGAGTTCATT-CCAGTCTAAGAT-CGATCGGACCAAAGGTTGTGGCAGTAGGATCGACAGCA
* ** * * ** * * * *
20932204 CGCAAGGGGGATTGGTCCGATCCCCGACTTGGGCATTTTGCCT-TTTAGGCCAGCTGAGCGCTCG
385 CGCAGGGGGGACCGGGCCGATCCCTGACTTGCACATTCTGCCTCTCTA-GCCAGCTGAGCACCCG
* * * *
20932268 CGCGCTCGATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCCCCAACCGGAC
449 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
* * *
20932333 CGAGGGTTGTAGTAGCAGGATCGGCAGCGGGATCAACAGCATGCAAAGGGGGACC-AGGCTGATC
514 CGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGACAGCATGCAAAGGGGGACCGA-GCTGATC
* * * * * * **
20932397 CCTGACTTGCGCATTATACCTCTCTGGTCAACTGAGCGCTCGTA-C-GCTC-GTT---TCGT-GG
578 CCCGGCTTGCGCATTATGCCTCTCT-G---ACTGAGC-CTCG-ACCTGTTCGGTTGACACATACA
* * *
20932455 GTTGACT-
637 GCTCAGTC
* * * * *
20932462 TAGGCATACGGAGTTCATTCCCAATCTAAGATC-AGACCAGATCGAGGGTTGC-GTCAGTAGGAT
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGA-ACCGGATCGAGGGTTGCAGT-AGCAGGAT
* * * * * * *
20932525 CGGTAGCACGCAGGGGATACCGGGCCGATCCCCGGCTTACGCATTCTGCCCCTCCGATCGGCTAA
64 CGGTAGCACACAGGGG-GACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGA
* * *
20932590 GCACCCGCACACCCGTTTCATGCGTTGGCTTAGGGATAGGGAGTTCATTCCATGTCTAAGCGCC-
128 GCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC-CCT
* * * * *
20932654 AGCCGGATCGAGGGTTGTGGCAGCGGGACCGATAGTACGCAGAGGGGGTTGGGTCGATCCCCGGC
192 AGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGATCGGGTCGATCCCCGGC
** * * * ** *
20932719 TTGCGCATTATGCCTTTTCGGTCGGCTCAACGTCCGAACACTCATTTCATGGGTTGACTTATGCA
257 TTGCGCATTATGCCTTTTCGGTCGGCTCAGTGACCGTACGCTTGTTTCGTGGGTTGACTTATGCA
* * * * *
20932784 TACGGAGTTCATTGCCAATCTAAGATCAGATCGGATCAAGGGTTATGGCAGTAGGATCTACAGCA
322 TACGGAGTTCATT-CCAGTCTAAGATC-GATCGGACCAAAGGTTGTGGCAGTAGGATCGACAGCA
* * * * *
20932849 CGCAGGGGGGACCGGGCCGATCCCTGACATGCACATTCTACCTCTCCAGCCGGCTTA-CTACCCG
385 CGCAGGGGGGACCGGGCCGATCCCTGACTTGCACATTCTGCCTCTCTAGCCAGCTGAGC-ACCCG
* *
20932913 CACGCTCGTTTCGTGGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAG-CCTAGGCCGGA
449 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA-GCCGGA
* * * * * *
20932977 CCGAGGGTTGTGGTAGTAAGACCGGTAGCGGGATTGATAGCATGCATAGGGGGACCGAGCTGATC
513 CCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGACAGCATGCAAAGGGGGACCGAGCTGATC
* *
20933042 CCCGGCTTG-ACATTATGCCTCTCTGACTG-GCCTCG-CCTG-TCGGTTGAGCACCTACACGCTC
578 CCCGGCTTGCGCATTATGCCTCTCTGACTGAGCCTCGACCTGTTCGGTTGA-CACATACA-GCTC
20933103 AGTC
641 AGTC
*
20933107 TAAGCATACAGAGTTCATTCCCAGTCTAAGATC-AGACCGGATCGAGGGTTGCAGCAGCAGGATC
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGA-ACCGGATCGAGGGTTGCAGTAGCAGGATC
* * * ** * * *
20933171 AGCAGCACGCAGGGGGACCAGGCCGATCTTCGGCTTGCGCATTCTTCCTCTCCGGCCGACTGAGC
65 GGTAGCACACAGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGC
* * * *
20933236 ACCCGCACGCCCGTTTCGTGGATTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCTAGT
130 ACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGC
* * **
20933301 CGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGATCGATCCTTGGCTT
195 CGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGA-GGGGATCGGGTCGATCCCCGGCTT
*
20933366 GCGTATTATGC
259 GCGCATTATGC
20933377 TCATTTCATG
Statistics
Matches: 1281, Mismatches: 235, Indels: 114
0.79 0.14 0.07
Matches are distributed among these distances:
637 3 0.00
638 8 0.01
639 2 0.00
640 4 0.00
642 2 0.00
643 11 0.01
644 231 0.18
645 486 0.38
646 9 0.01
648 1 0.00
651 1 0.00
654 2 0.00
661 3 0.00
665 2 0.00
666 3 0.00
667 1 0.00
668 6 0.00
669 4 0.00
670 175 0.14
671 129 0.10
672 83 0.06
673 93 0.07
674 22 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (644 bp):
TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCAGTAGCAGGATCG
GTAGCACACAGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCA
CCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCC
GGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGATCGGGTCGATCCCCGGCTTGC
GCATTATGCCTTTTCGGTCGGCTCAGTGACCGTACGCTTGTTTCGTGGGTTGACTTATGCATACG
GAGTTCATTCCAGTCTAAGATCGATCGGACCAAAGGTTGTGGCAGTAGGATCGACAGCACGCAGG
GGGGACCGGGCCGATCCCTGACTTGCACATTCTGCCTCTCTAGCCAGCTGAGCACCCGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGT
TGTGGTAGCAGGACCGGCAGCGGGATCGACAGCATGCAAAGGGGGACCGAGCTGATCCCCGGCTT
GCGCATTATGCCTCTCTGACTGAGCCTCGACCTGTTCGGTTGACACATACAGCTCAGTC
Found at i:20933606 original size:26 final size:26
Alignment explanation
Indices: 20933555--20933606 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20933545 GTTGGCTTAG
* *
20933555 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGCCTAA
20933581 GCATACAGAGTTCATTCCCA-GCCTAA
1 GCATACAGAGTTCATT-CCATGCCTAA
20933607 TATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGCCTAA
Found at i:20934308 original size:26 final size:26
Alignment explanation
Indices: 20934278--20934330 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20934268 GTTGACTTGG
20934278 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
20934304 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20934330 G
1 G
20934331 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20934804 original size:158 final size:156
Alignment explanation
Indices: 20934304--20934805 Score: 442
Period size: 158 Copynumber: 3.2 Consensus size: 156
20934294 CCCAGTCTAA
* * * *
20934304 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-CAGTGGTAGGATCGACA
* * ** * * * ** *
20934369 GCACGCAAGAGGGACCGGATCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGACTGAGCGCC
65 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTG-CTCTCTGATAGGCTGAGCGCC
* * *
20934434 CGCATGCCCGTTTCGTTGGTTGGCTTAG
129 CGCACGCTCGTTTCGTAGGTTGGCTTAG
* ** * * *
20934462 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACTGAGGGTT--GTGGTAGCGGGACC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTCAGTGGTA---GGATC
* * * **
20934523 GACAGCACGCAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCT-ACCGGCTC
61 GACAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTG-CTCT-CTGATAGGCT-
* * * *
20934587 GA-TGCCCGCACGCTCATTTTGTAGGTTGACTTAG
122 GAGCGCCCGCACGCTCGTTTCGTAGGTTGGCTTAG
* * * *
20934621 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGTGGGTTACAGCGGTAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-CAGTGGTAGGATCGACA
* * * *
20934686 GCACGCAGGGGGGATCGGGCCGGTCCCCGGCTTGCGCATTCTGCGTTTCTGGTAGGCTGAGCGCC
65 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGC-TCTCTGATAGGCTGAGCGCC
* * *
20934751 CGAACGCTCGTTTCATGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTAGGTTGGCTTAG
20934779 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
20934806 CATATGGAGT
Statistics
Matches: 272, Mismatches: 55, Indels: 34
0.75 0.15 0.09
Matches are distributed among these distances:
155 4 0.01
157 11 0.04
158 133 0.49
159 113 0.42
160 6 0.02
162 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTCAGTGGTAGGATCGACAG
CACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCTCTCTGATAGGCTGAGCGCCCG
CACGCTCGTTTCGTAGGTTGGCTTAG
Found at i:20934809 original size:26 final size:26
Alignment explanation
Indices: 20934779--20934831 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20934769 GTTGGCTTAG
20934779 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
20934805 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20934831 G
1 G
20934832 ATAGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20935497 original size:26 final size:26
Alignment explanation
Indices: 20935467--20935519 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20935457 GTTGGCTTAG
**
20935467 GCATAC-AGAGTTCATTCCGTGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
20935493 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20935519 G
1 G
20935520 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20935554 original size:688 final size:672
Alignment explanation
Indices: 20934403--20935723 Score: 1688
Period size: 688 Copynumber: 1.9 Consensus size: 672
20934393 CCCCGACTTA
* * * *
20934403 CGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCATGCCCGTTTCGTTGGTTGGCTTAGGCATAG
1 CGCATTCTGCCTCTCCGACCGACTGAACGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
* * *
20934468 GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGTAGCGGGACCGACAGCACGC
66 AGAGTTCATTCCATGTCTAAGCCCAAGCCAGACTGAGGGTTGTGGCAGCGGGACCGACAGCACGC
*
20934533 AGAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCTACCGGCTCGATGCCCGCAC
131 AGAGGGGGACCGAGCCGATCCCCAGCTCGCGCATTATGCCTCTCCTACCGGCTCGATGCCCGCAC
** * * *
20934598 GCTCATTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGT
196 GCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAAACGA
* * * * *
20934663 GGGTTACAGCGGTAAGATCGACAGCACGCAGGGGGGATCGGGCCGGTCCCCGGCTTGCGCATTCT
261 AGGTTACAGCAGCAAGATCGACAGCACGCAGGGGGGATCGGGCCGATCACCGGCTTGCGCATTCT
* * * * *
20934728 GCGTTTCTGGTAGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
326 GCCTCTCCGGTAGGCTGAGAGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCA
* *
20934793 TTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATAGGACCGAACCGAGGGTTACGGTA
391 TTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATAGGACCGAACCGAGGGTTACGGTA
* * * ** *
20934858 GTAGGACCAGCAGCAGGATCGATAGCAC-CA-AGGGGAACCGAGCCGATCGTCGGCTTGCGTATT
456 GCAGGACCAGCAGCAGGATCGACAGCACGCAGAGGGGAACCGAACCGATCCCCGGCTTACGTATT
* *
20934921 CTGCCTCTCCGGTCGGTTGAGCGCACGCACGCTCGTTTCATGGGTT-GACTTAGGCATACGGAGT
521 CTGCCTCTCCGGTCGGTTGAGCGCACGCACACTCATTTCATGGGTTAG-CTTAGGCATACGGAGT
*
20934985 TCATTCCATCTCTAAGCCCCAGACGGACCGAGGGTTGTGGCAGCAGGATTGAGAGCATGTAGGGG
585 TCATTCCATCTCTAAGCCCCAGACGGACCGAAGGTTGTGGCAGCAGGATTGAGAGCATGTAGGGG
20935050 GGACATAGCTGATCCCTGGCTTG
650 GGACATAGCTGATCCCTGGCTTG
* * * * *
20935073 CGCATTCTGCCTCTCTGGCCGGCTGAATGCCTACACGCCCGTTTCGTGGGTTGGCTTAGGCAT-G
1 CGCATTCTGCCTCTCCGACCGACTGAACGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
*
20935137 AGAGTTCATTCTATGTCTAAGCCCAAGCCAGA-TCGAGGGTTGTGGCAGCGGGACC-AGCAGCAC
66 AGAGTTCATTCCATGTCTAAGCCCAAGCCAGACT-GAGGGTTGTGGCAGCGGGACCGA-CAGCAC
* * * *
20935200 GCAGAGGGGGACCGGGCCGATCCTCAGCTCGTGCATTATGCCTCT-CTGACTTGTGCCTCAATGC
129 GCAGAGGGGGACCGAGCCGATCCCCAGCTCGCGCATTATGCCTCTCCT-AC-CG-G-CTC---G-
* * *
20935264 ATTATGCTTCAGCGCCCGCACGCTTATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
186 ---A----T----GCCCGCACGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAA
* * ** * *
20935329 TCTAAGATCGGATCGAAACGAAGGTTATGGCAGCAGGATTGACAGCACGCAGGGGGGGATCGGGC
240 TCTAAGATCAGACCGAAACGAAGGTTACAGCAGCAAGATCGACAGCACGCA-GGGGGGATCGGGC
* * * * * *
20935394 TGATCACTGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGAGCCCGTATGCTCGTTTCATGGGT
304 CGATCACCGGCTTGCGCATTCTGCCTCTCCGGTAGGCTGAGAGCCCGAACGCTCGTTTCATGGGT
*
20935459 TGGCTTAGGCATACAGAGTTCATTCCGTGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCA
369 TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT-A
* * * *
20935524 -GACC-AGACCGAGGGTTACGGTGGCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGGATC
433 GGACCGA-ACCGAGGGTTACGGTAGCAGGACCAGCAGCAGGATCGACAGCACGCAGAGGGGAACC
* * * * * *
20935587 GAACCTATCCCCGGCTTACGTATTCTGCCTCTCCGGTCGGTTGAGTGCCCGTACATTCATTTCGT
497 GAACCGATCCCCGGCTTACGTATTCTGCCTCTCCGGTCGGTTGAGCGCACGCACACTCATTTCAT
* * *
20935652 GGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAAGGTTGTGGCA
562 GGGTTAGCTTAGGCATACGGAGTTCATTCCATCTCTAAGCCCCAGACGGACCGAAGGTTGTGGCA
*
20935717 GTAGGAT
627 GCAGGAT
20935724 CGACAGCGAG
Statistics
Matches: 550, Mismatches: 74, Indels: 34
0.84 0.11 0.05
Matches are distributed among these distances:
668 4 0.01
669 99 0.18
670 55 0.10
671 1 0.00
672 3 0.01
675 1 0.00
679 1 0.00
683 1 0.00
687 87 0.16
688 170 0.31
689 3 0.01
690 124 0.23
691 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (672 bp):
CGCATTCTGCCTCTCCGACCGACTGAACGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
AGAGTTCATTCCATGTCTAAGCCCAAGCCAGACTGAGGGTTGTGGCAGCGGGACCGACAGCACGC
AGAGGGGGACCGAGCCGATCCCCAGCTCGCGCATTATGCCTCTCCTACCGGCTCGATGCCCGCAC
GCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAAACGA
AGGTTACAGCAGCAAGATCGACAGCACGCAGGGGGGATCGGGCCGATCACCGGCTTGCGCATTCT
GCCTCTCCGGTAGGCTGAGAGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCA
TTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATAGGACCGAACCGAGGGTTACGGTA
GCAGGACCAGCAGCAGGATCGACAGCACGCAGAGGGGAACCGAACCGATCCCCGGCTTACGTATT
CTGCCTCTCCGGTCGGTTGAGCGCACGCACACTCATTTCATGGGTTAGCTTAGGCATACGGAGTT
CATTCCATCTCTAAGCCCCAGACGGACCGAAGGTTGTGGCAGCAGGATTGAGAGCATGTAGGGGG
GACATAGCTGATCCCTGGCTTG
Found at i:20936429 original size:158 final size:158
Alignment explanation
Indices: 20936161--20936521 Score: 393
Period size: 158 Copynumber: 2.3 Consensus size: 158
20936151 TGTACGCTCA
* * ** * *
20936161 TTTCGTGGGTTGACTTCTGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTT
1 TTTCATGGATTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTT
* * * * * ** * *
20936226 GCGACGGTAGGATCGACAGCACTTAAGGGGGATCGGGTTGATCCTCGGCTTGCGCATTCTACCTC
66 GCGACAGCAAGATCGACAGCACGTAAGGGGGACCGGGCCGATCCTCGACTTACGCATTCTACCTC
** **
20936291 TTCGGCCGGATGAATGCCCGCACGCCCG
131 TTCAACCGGATGAACACCCGCACGCCCG
*
20936319 TTTCATGGATTGACTTAGTCATAC-GAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGT
1 TTTCATGGATTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGT
** * * * *
20936383 TGCGGTAGCAAGATCGACAGCACGTAGGGGGGACCGGGCCGGTCCTCGACTTACGTATTCTTCCT
65 TGCGACAGCAAGATCGACAGCACGTAAGGGGGACCGGGCCGATCCTCGACTTACGCATTCTACCT
* * * **
20936448 CTTCAACCGGTTGAGCACCCGCATGCTTG
130 CTTCAACCGGATGAACACCCGCACGCCCG
* *
20936477 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAG
1 TTTCATGGATTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG
20936522 CATACGGAGT
Statistics
Matches: 166, Mismatches: 34, Indels: 6
0.81 0.17 0.03
Matches are distributed among these distances:
157 4 0.02
158 161 0.97
159 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.27
Consensus pattern (158 bp):
TTTCATGGATTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTT
GCGACAGCAAGATCGACAGCACGTAAGGGGGACCGGGCCGATCCTCGACTTACGCATTCTACCTC
TTCAACCGGATGAACACCCGCACGCCCG
Found at i:20936525 original size:26 final size:26
Alignment explanation
Indices: 20936495--20936547 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20936485 GTTGGCTTAG
20936495 GCATACAGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
*
20936521 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
20936547 G
1 G
20936548 ACCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:20936901 original size:26 final size:26
Alignment explanation
Indices: 20936871--20936923 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20936861 TTTGACTTAG
20936871 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20936897 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20936923 G
1 G
20936924 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20937401 original size:26 final size:26
Alignment explanation
Indices: 20937372--20937424 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20937362 GTTGGCTTAG
*
20937372 GCATACGGATTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20937398 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20937424 G
1 G
20937425 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20938124 original size:26 final size:26
Alignment explanation
Indices: 20938094--20938146 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20938084 GTTGACAAAC
*
20938094 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20938120 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20938146 G
1 G
20938147 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20938529 original size:170 final size:169
Alignment explanation
Indices: 20938205--20938646 Score: 428
Period size: 170 Copynumber: 2.6 Consensus size: 169
20938195 AGGACTGGGT
* ** * * *
20938205 CGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCCTTTCATGGGT
1 CGATCCTCGGCTTCCGCATTCTGCC-CTTTGGTCGGCTGAGCACCCGTACGCTCATTTCATGGGT
* ** * * *
20938270 TGTCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAG
65 TGACTTAGGCATATGGAGTTCATT-CCAGTCTAAGCCCAGACCAGACCAAGGATTGCAGCAGCAG
*
20938335 GTCCAGTAGCAGGATCACCAGCACATAG-GGGGGACCGAGC
129 GTCCAGTAGCAGGATCACCAGCACAGAGAGGGGGACCGAGC
* ** * * * *
20938375 CGATCCTCAGCTTTTGCATTCTGCCGCTTTGGTTGGCTGAGCACCTGTACGCTCGTTTCGTGGGT
1 CGATCCTCGGCTTCCGCATTCTGCC-CTTTGGTCGGCTGAGCACCCGTACGCTCATTTCATGGGT
* * ** *
20938440 TGGCTTAGGCATATGGAGTTCATTCCAGGTCTAAGCCCTAG-CCAGACTAAGGATTGTGGCAGTA
65 TGACTTAGGCATATGGAGTTCATTCCA-GTCTAAGCCC-AGACCAGACCAAGGATTGCAGCAGCA
* * *
20938504 GGATCGA-TAGCGGGATCGA-CAGCACAGAGAGGGGGACCGGGC
128 GG-TCCAGTAGCAGGATC-ACCAGCACAGAGAGGGGGACCGAGC
* ** * *
20938546 TGATCC-CTGGCTTCCGCATGATG-CCTTTCCGGCCGGTTGAGCACCCGTACGCTCATTTCATGG
1 CGATCCTC-GGCTTCCGCATTCTGCCCTTT--GGTCGGCTGAGCACCCGTACGCTCATTTCATGG
* *
20938609 GTTGACTTAGGCATACGGAGTTCATCCTCAGTCTAAGC
63 GTTGACTTAGGCATATGGAGTTCATTC-CAGTCTAAGC
20938647 ATATGGAGTT
Statistics
Matches: 222, Mismatches: 41, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
169 7 0.03
170 122 0.55
171 91 0.41
172 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (169 bp):
CGATCCTCGGCTTCCGCATTCTGCCCTTTGGTCGGCTGAGCACCCGTACGCTCATTTCATGGGTT
GACTTAGGCATATGGAGTTCATTCCAGTCTAAGCCCAGACCAGACCAAGGATTGCAGCAGCAGGT
CCAGTAGCAGGATCACCAGCACAGAGAGGGGGACCGAGC
Found at i:20938974 original size:159 final size:158
Alignment explanation
Indices: 20938685--20939028 Score: 352
Period size: 159 Copynumber: 2.2 Consensus size: 158
20938675 GGATCAGACC
* * * * *
20938685 GAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCTGATTCCCAGCTTGCGTATT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCTGATCCCCAACTTACGCATT
* * * * ***
20938750 CTGCCTCTCCGGTCGGCTGAGCACACGCATGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTT
66 ATGCCTCTCCGGTCGGCTAAGCACACGCATGCCCATTTCGTGGGTTGACTTAGGCATACAAAGTT
20938815 CATT-CCATGTCTAAGCCCCAGCTGGACT
131 CATTCCCA-GTCTAAGCCCCAGCTGGACT
* ** * * * *
20938843 GAGGGTTGTGGCTGTGGGATTGGCAGCACGTAGTGGGGGACCGGGTTGGTCCCCAACTTACGCAT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGTAG-GGGGGACCGGGCTGATCCCCAACTTACGCAT
* * * * *
20938908 TATGCCTCTTCGG-CTGGCTAAGCGCCCGCATGCTCATTTCGTGGGTTGACTTATGCATACAAAG
65 TATGCCTCTCCGGTC-GGCTAAGCACACGCATGCCCATTTCGTGGGTTGACTTAGGCATACAAAG
** * *
20938972 TTCATTCCCAGTCTAAG-ATCAGACCGGACC
129 TTCATTCCCAGTCTAAGCCCCAG-CTGGACT
* * *
20939002 GAGGGTTGTGGCATCTGGATCAACAGC
1 GAGGGTTGTGGCAGCAGGATCGACAGC
20939029 CTCTCCAGCC
Statistics
Matches: 147, Mismatches: 35, Indels: 7
0.78 0.19 0.04
Matches are distributed among these distances:
158 32 0.22
159 112 0.76
160 3 0.02
ACGTcount: A:0.18, C:0.25, G:0.32, T:0.25
Consensus pattern (158 bp):
GAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCTGATCCCCAACTTACGCATT
ATGCCTCTCCGGTCGGCTAAGCACACGCATGCCCATTTCGTGGGTTGACTTAGGCATACAAAGTT
CATTCCCAGTCTAAGCCCCAGCTGGACT
Found at i:20939109 original size:26 final size:26
Alignment explanation
Indices: 20939078--20939130 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20939068 GTTGGGTTAG
**
20939078 GCATACAGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20939104 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20939130 G
1 G
20939131 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20940441 original size:343 final size:343
Alignment explanation
Indices: 20940021--20940657 Score: 859
Period size: 343 Copynumber: 1.9 Consensus size: 343
20940011 AGCAGGTCCA
* * * **
20940021 GTAGCAGGATCGCCAGCACGCAGGGGGGACCGGGTCGATCCTCAGCTTTCGCATTCTGCCTCTTT
1 GTAGCAGGATCGACAGCACGCAGGGGGGACCGGCTCGATCCTCAGCTTGCGCATTCTGCCTCTCC
* * *
20940086 GGCTGGCTGAGCAC-CTGTACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCAGG
66 GGCTGGCTGAGCACAC-GCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAGG
* * * *
20940150 TCTAAGCCCTAGCTGGACTAAGGGTTGTGGCAGTAGGATCGACAGCACACAGAGGGGGACCAGGC
130 TCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCAGGC
* ** * * *
20940215 TGATCCCCGACTTGTGCATTATGCCTCTTCGGCCGGTTGAGCACCCGCACGCTCGTTTCATGGGT
195 TGATCCCCAACTTACGCATTATGCCTCTTCGGCCGGCTAAGCACCCGCACGCTCATTTCATGGGT
**
20940280 TGACTTAGGCATACGCAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCTCAGGCTAAGATCG
260 TGACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCTCAGGCTAAGATCG
20940345 GATCGGATCGAGGGTTACG
325 GATCGGATCGAGGGTTACG
* *
20940364 GTAGCAGGATCGACAGCACGCAGGGGGGATCGAGCT-GATTCC-CAGCTTGCGTATTCTGCCTCT
1 GTAGCAGGATCGACAGCACGCAGGGGGGACCG-GCTCGA-TCCTCAGCTTGCGCATTCTGCCTCT
20940427 CCGG-TAGGCTGAGCACACGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
64 CCGGCT-GGCTGAGCACACGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
* * * * * * * *
20940491 TGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCTGCGGGATTGGCAGCACACAGTGGGGGACCGG
128 GGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCAG
* * * * * **
20940556 GTTGGTCCCCAACTTACGCATTATGCCTCTTTGGCTGGCTAAGCGCCCGCACGCTCATTTTGTGG
193 GCTGATCCCCAACTTACGCATTATGCCTCTTCGGCCGGCTAAGCACCCGCACGCTCATTTCATGG
* *
20940621 GTTGACTTATGCATACAAAGTTCATTCCCAGTCTAAG
258 GTTGACTTAGGCATACAAAGTTCATCCCCAGTCTAAG
20940658 ATCAGACCGG
Statistics
Matches: 251, Mismatches: 39, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
342 1 0.00
343 244 0.97
344 6 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (343 bp):
GTAGCAGGATCGACAGCACGCAGGGGGGACCGGCTCGATCCTCAGCTTGCGCATTCTGCCTCTCC
GGCTGGCTGAGCACACGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAGGT
CTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCAGGCT
GATCCCCAACTTACGCATTATGCCTCTTCGGCCGGCTAAGCACCCGCACGCTCATTTCATGGGTT
GACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCTCAGGCTAAGATCGG
ATCGGATCGAGGGTTACG
Found at i:20940778 original size:26 final size:26
Alignment explanation
Indices: 20940747--20940799 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20940737 GTTGGGTTAG
20940747 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20940773 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20940799 G
1 G
20940800 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20941471 original size:26 final size:26
Alignment explanation
Indices: 20941441--20941493 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20941431 GTTGACTTAG
*
20941441 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20941467 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20941493 G
1 G
20941494 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20948021 original size:26 final size:26
Alignment explanation
Indices: 20947985--20948034 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
20947975 GTTGACTTAG
20947985 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20948011 GCATACGGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATCCCCAGTCT
20948035 CAGATCGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20948299 original size:159 final size:158
Alignment explanation
Indices: 20948011--20948514 Score: 482
Period size: 158 Copynumber: 3.2 Consensus size: 158
20948001 CCCAGTCTAA
* * * ** * * *
20948011 GCATACGGAGTTCATTCCCA-GTCTCAG-ATCGGACTAGACCGAGGGTTACGGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTACAGCAGCAGGACCGA
** * *
20948074 CAGCACGCAGGGGGGATCACGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCC-GACTGAGC
65 CAGCACGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCTG-CTGAGC
* *
20948138 GCCCGCACGCCCGTTTCATGGGTTAGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTT-GCTTAG
* * * * * *** *
20948169 GCATAGGGAGCTCATTCCGTGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTACAGCAGCAGGACCGAC
* * *
20948233 AGCACGCAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCCTGCTCAGCG
66 AGCACGCAG-GGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCTGCTGAGCG
** * *
20948298 CCCGCACTTTCGTTTCGTGGGTTGACTAAT
130 CCCGCACGCTCGTTTCGTGGGTTG-CTTAG
* * *
20948328 GCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTACAGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTACAGCAGCAGGACCGA
* * * * ** ** *
20948391 TAGCACGTAGGGGGGACCGGGCCGATCTTTTGCTAACGCATTCTGCCTCTTC-GACTGGCTGAGC
65 CAGCACGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCT-GCTGAGC
* * *
20948455 ACCCGCACGCTCATTTCGTTGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTT-GCTTAG
20948486 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
20948515 TACGGAGTTC
Statistics
Matches: 276, Mismatches: 59, Indels: 21
0.78 0.17 0.06
Matches are distributed among these distances:
157 8 0.03
158 140 0.51
159 125 0.45
160 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTACAGCAGCAGGACCGAC
AGCACGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCTGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGCTTAG
Found at i:20949243 original size:26 final size:26
Alignment explanation
Indices: 20949207--20949259 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20949197 GTTGACTTAG
20949207 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
20949233 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20949259 G
1 G
20949260 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20949521 original size:158 final size:158
Alignment explanation
Indices: 20949233--20949735 Score: 512
Period size: 158 Copynumber: 3.2 Consensus size: 158
20949223 CCCAGTCTAA
* *** * *
20949233 GCATATGGAGTTCATTCC-TAGTCTAAG-ATTGGACTGGACCGAGGGTTGCGGCAGCAGGATCGC
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACTGGATCGAGGGTTGCGGCAGCAGGATCGA
* * * * * *
20949296 CACCACGCAGGGGGGACCAGGCCGATCTCTAGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCG
65 CAGCACGCAGGGGGGACC-GGGCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCG
* * *
20949361 CCCGCACGCCCGTTTCGTGGGTTGGCATAG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * ** * *
20949391 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGATCGAGGGTTGTGGCAGTGGGATTGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACTGGATCGAGGGTTGCGGCAGCAGGATCGAC
* * * *
20949455 AGCACGCAGAGGGGGACCGGGCGATCCCCGGCTTGTGCATTATGGCTCTCCGGCCGGCTTAGCGC
66 AGCACGCAG-GGGGGACCGGGCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGC
* * *
20949520 CCACACGCTCATTTTGTGGGTTGACTTAG
130 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * **
20949549 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCGGACCAGATCGAGGGTTGCGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACTGGATCGAGGGTTGCGGCAGCAGGATCGA
* ** * * * * * **
20949612 TAGCACATAGGGGGGATCGGGCCGATCCTCAGCTTACGCATTTTGTCTCTCCGGTAGGCTGAGCG
65 CAGCACGCAGGGGGGACCGGG-CGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCG
*
20949677 CTCGCACGCTCATTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
*
20949707 GCATACAGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
20949736 TATAGAGTTC
Statistics
Matches: 279, Mismatches: 58, Indels: 15
0.79 0.16 0.04
Matches are distributed among these distances:
157 15 0.05
158 250 0.90
159 14 0.05
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACTGGATCGAGGGTTGCGGCAGCAGGATCGAC
AGCACGCAGGGGGGACCGGGCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:20949757 original size:26 final size:26
Alignment explanation
Indices: 20949707--20949759 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20949697 GTTGGCTTAG
*
20949707 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
20949733 GCATATAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
20949759 G
1 G
20949760 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:20950604 original size:26 final size:26
Alignment explanation
Indices: 20950574--20950626 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20950564 GTTTGCTTAG
*
20950574 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
20950600 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20950626 G
1 G
20950627 ATTTTGATCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20952015 original size:26 final size:26
Alignment explanation
Indices: 20951978--20952030 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20951968 GTTGACTTAG
*
20951978 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
20952004 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20952030 G
1 G
20952031 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20952517 original size:26 final size:26
Alignment explanation
Indices: 20952481--20952530 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20952471 GACTTAGGCA
20952481 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGAGTTCATCCCCAGTCTAAGCG
*
20952507 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
20952531 ATTGAACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCG
Found at i:20953398 original size:26 final size:26
Alignment explanation
Indices: 20953369--20953422 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
20953359 GTTGACTTAG
20953369 GCATACGGAGTTCAACCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
* **
20953395 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
20953421 GC
1 GC
20953423 TTGAACCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCCAGTCTAA
Found at i:20953761 original size:26 final size:26
Alignment explanation
Indices: 20953712--20953764 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20953702 GTTAGCTTAG
* *
20953712 GCATACGGAGTTCATTCGATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
20953738 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
20953764 G
1 G
20953765 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:20954468 original size:26 final size:26
Alignment explanation
Indices: 20954432--20954484 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20954422 GTTGACTTAG
*
20954432 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
* * *
20954458 GCATACAGAGTTTATTCCTAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
20954484 G
1 G
20954485 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:20956055 original size:26 final size:26
Alignment explanation
Indices: 20956019--20956071 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20956009 GTTGACTTAG
20956019 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* **
20956045 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20956071 G
1 G
20956072 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20956398 original size:26 final size:26
Alignment explanation
Indices: 20956362--20956414 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20956352 GTTGGCTTAG
**
20956362 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20956388 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20956414 G
1 G
20956415 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20956875 original size:27 final size:27
Alignment explanation
Indices: 20956817--20956875 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
20956807 ACTCTTTCTA
**
20956817 AAAAAATTTTAAAAAATCCTGAACCGT
1 AAAAAATTTTAAAAAATCCTGAAAAGT
* *
20956844 AAAAAGTTTT-AAAAATCGTGAAAAGT
1 AAAAAATTTTAAAAAATCCTGAAAAGT
*
20956870 AGAAAA
1 AAAAAA
20956876 CGGGTCGTCT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.56, C:0.08, G:0.12, T:0.24
Consensus pattern (27 bp):
AAAAAATTTTAAAAAATCCTGAAAAGT
Found at i:20957286 original size:26 final size:26
Alignment explanation
Indices: 20957256--20957305 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
20957246 TGGGTTGACT
* *
20957256 TAGGCATATGGAGTTCATCCCCAGCC
1 TAGGCATACGAAGTTCATCCCCAGCC
*
20957282 TAGGCATACGAAGTTCATTCCCAG
1 TAGGCATACGAAGTTCATCCCCAG
20957306 TCTAAGATCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (26 bp):
TAGGCATACGAAGTTCATCCCCAGCC
Found at i:20957798 original size:26 final size:26
Alignment explanation
Indices: 20957762--20957814 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20957752 GTTGGCTTAG
20957762 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
20957788 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
20957814 G
1 G
20957815 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:20958141 original size:157 final size:155
Alignment explanation
Indices: 20957855--20958298 Score: 455
Period size: 157 Copynumber: 2.8 Consensus size: 155
20957845 GACCAGCAGT
* * * * *
20957855 AGGATCGACAGCACGCAGGGGGGAT-TGAGCCGATCCCCGGCTTGGGCATTCTGCCTCTCCGACT
1 AGGATCGATAGCACGCAGAGGGGATCAG-GCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACT
* * *
20957919 GGC-AGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCA-TCCCTAGTCT
65 -GCTA-AGC-CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCT
* **
20957982 AAGAGC-AAACCGGACGAGGGTTGTGGTAGC
126 AAG-CCTAAACCAAACGAGGGTTGTGGTAGC
* * * *
20958012 AGGATCGATAGCACGTAGAGGGGATCAGGCCGATCCCCGATTTGCGTATTCTGCCTCTCCAGTCT
1 AGGATCGATAGCACGCAGAGGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC-GACT
* * *
20958077 GCTAAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
65 GCTAAGC-CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* ** *
20958142 CCTCAGTCAAACGAGGGTTGTTGTAGC
129 CCTAAACCAAACGAGGGTTGTGGTAGC
* * * * * * * * * * *
20958169 AGGACCGGTAGGACGCAGAGGGGGACCGGGCTGATTCCTGACTTGCGCATTCTACCTCTCCGGCC
1 AGGATCGATAGCACGCAGA-GGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACT
* *
20958234 GACTGAGCCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 G-CTAAGCCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
20958299 TATATGGAGT
Statistics
Matches: 238, Mismatches: 42, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
156 1 0.00
157 190 0.80
158 47 0.20
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (155 bp):
AGGATCGATAGCACGCAGAGGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTG
CTAAGCCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
TAAACCAAACGAGGGTTGTGGTAGC
Found at i:20960956 original size:158 final size:158
Alignment explanation
Indices: 20960386--20960974 Score: 552
Period size: 159 Copynumber: 3.7 Consensus size: 158
20960376 ACGGGATCTG
* * ** * * *
20960386 CAGCACGCAGAGGGGGACCG-GGCGATCCCCGATTTGTGCATTAC-GCCTCTCCGGTCAGCTCAG
1 CAGCAAGCAG-GGGGGACCGAGTCGATCCCCGGCTTGCGCATT-CTGCCTCTCCGGTCGGCTAAG
* * * **
20960449 CACCCGCACG-TTCATTTCGTGGGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAAGATTGG
64 CGCCCGCACGCTT-GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG
*
20960513 A-CTAGACAGAGGGTTGCGGTAGCAGGATCGA
128 ATC-GGACAGAGGGTTGCGGTAGCAGGATCGA
* * * *
20960544 CAGCACA-CCGGAGGGGACCGGGTCGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAG
1 CAGCA-AGCAGG-GGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAG
* * * * * * **
20960608 TGCCCGTACGCCTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-TCATGTCTAAGCCCCA
64 CGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCA
* * * *
20960672 -ATTGGACCGAGGGTTGTGGTAGCGGGATCTG-
127 GATCGGACAGAGGGTTGCGGTAGCAGGATC-GA
* * * * * * *
20960703 CAGCACGTAGAGGGGGACC-AGGCTGATCCCCAGTTTGTGCATTAC-GCCTCTCCGGTCGGCTCA
1 CAGCAAGCAG-GGGGGACCGAGTC-GATCCCCGGCTTGCGCATT-CTGCCTCTCCGGTCGGCTAA
* *
20960766 GCGCCCGCACGATCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG
63 GCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG
*
20960831 ATCGGACAGAGGGTTGCGATAGCAGGATCGA
128 ATCGGACAGAGGGTTGCGGTAGCAGGATCGA
* * * *
20960862 CAGCAAGCAGGGGGGACCGAGTC-AGTCCCTGGCTTGCGCATTCTTCCTCTCCGATCGACTAAGC
1 CAGCAAGCAGGGGGGACCGAGTCGA-TCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGC
* * * * *
20960926 GCCTGCACGCTTGTTTCGTGGGTTGGCTTAGGCACACGGAGTTGATTCC
65 GCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC
20960975 ATGTTTAAGC
Statistics
Matches: 342, Mismatches: 70, Indels: 38
0.76 0.16 0.08
Matches are distributed among these distances:
157 3 0.01
158 102 0.30
159 231 0.68
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
CAGCAAGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCG
CCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATC
GGACAGAGGGTTGCGGTAGCAGGATCGA
Found at i:20961373 original size:26 final size:26
Alignment explanation
Indices: 20961337--20961389 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20961327 GTTGACTTAG
20961337 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20961363 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20961389 G
1 G
20961390 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20961725 original size:26 final size:25
Alignment explanation
Indices: 20961687--20961738 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
20961677 TTGACTTAGG
20961687 GCATACGAGTTCATCCCCAGTTCTAA
1 GCATACGAGTTCATCCCCAG-TCTAA
*
20961713 GCATACG-GATTCATTCCCAGTCTAA
1 GCATACGAG-TTCATCCCCAGTCTAA
20961738 G
1 G
20961739 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (25 bp):
GCATACGAGTTCATCCCCAGTCTAA
Found at i:20962212 original size:158 final size:157
Alignment explanation
Indices: 20961713--20962213 Score: 406
Period size: 158 Copynumber: 3.2 Consensus size: 157
20961703 CCAGTTCTAA
* * * ** ** * *
20961713 GCATACGGA-TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTTTGACAGCAGGATCGGC-
1 GCATACGGAGTTCATT-CCAGTCTAAGACCGAACCAGACCGAGGGTTGCGGTAGCAGGACCGACA
* * * * * * *
20961776 A-GCACGGAGGGCAGACCAAACCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTCGGTTGAGCG
65 ACACACAGAGGG-GGACCAGACCGATCCCCAGCTTGTGCATTCTGCCTCTTCGGCCGGATGAGCG
* *
20961840 CCCCGCACGCCCATTTTCTGGGTTGGCTTAG
129 -CCCGCACGCTC-GTTTCTGGGTTGGCTTAG
* * * * * * *
20961871 GCATAGGGAGTTCATTCCACGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGTAGCGGGACCGGCA
1 GCATACGGAGTTCATTCCA-GTCTAAGACCGAACCAGACCGAGGGTTGCGGTAGCAGGACCGACA
** * * * * * *
20961936 GTACGCAGAGGGGGACCGGGCCGATCCCC-GACTTGTGCATTATGCCTCTTC-GCCGGATCAACG
65 ACACACAGAGGGGGACCAGACCGATCCCCAG-CTTGTGCATTCTGCCTCTTCGGCCGGATGAGCG
* * * *
20961999 CTCGCACGCTCGTTTTATGGGTTGACTTAT
129 CCCGCACGCTCG-TTTCTGGGTTGGCTTAG
* * * * * *
20962029 TCATATGGAGTTCATTCCCAATCTAAGATCGAACC-GAACTGAGGGTTGCGGTA-CTAGGATCGA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCGAACCAG-ACCGAGGGTTGCGGTAGC-AGGACCGA
* * * *
20962092 CAACATACAG-GGGGGACCAGACTGATCCCCAGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGC
63 CAACACACAGAGGGGGACCAGACCGATCCCCAGCTTGTGCATTCTGCCTCTTCGGCCGGATGAGC
*
20962156 GCCCGCACGCTCGTTTCGTGCGTTGGCTTAG
128 GCCCGCACGCTCGTTTC-TGGGTTGGCTTAG
20962187 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
20962214 CATACGGAGT
Statistics
Matches: 266, Mismatches: 64, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
157 43 0.16
158 134 0.50
159 51 0.19
160 31 0.12
161 7 0.03
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGACCGAACCAGACCGAGGGTTGCGGTAGCAGGACCGACAA
CACACAGAGGGGGACCAGACCGATCCCCAGCTTGTGCATTCTGCCTCTTCGGCCGGATGAGCGCC
CGCACGCTCGTTTCTGGGTTGGCTTAG
Found at i:20962223 original size:26 final size:26
Alignment explanation
Indices: 20962187--20962239 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20962177 GTTGGCTTAG
*
20962187 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTACATTCCCA-GTCTAA
20962213 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
20962239 G
1 G
20962240 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:20962956 original size:26 final size:26
Alignment explanation
Indices: 20962910--20962962 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20962900 GTTGACTTAG
*
20962910 GCATACGGAGTTCATCTCCAGTCTAA
1 GCATACGGAGTTCATCTCCAGCCTAA
20962936 GCATACGGAGTTCAT-TCCCAGCCTAA
1 GCATACGGAGTTCATCT-CCAGCCTAA
20962962 G
1 G
20962963 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAGCCTAA
Found at i:20963277 original size:159 final size:158
Alignment explanation
Indices: 20962936--20963303 Score: 395
Period size: 159 Copynumber: 2.3 Consensus size: 158
20962926 TCCAGTCTAA
* * * *
20962936 GCATACGGAGTTCATTCCCAGCCTAAGATCGGATCGGACCGAGGGTTGCGGTAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGATCGGACCGAGGGTTGCGGCAGTAGGATCGGCA
*
20963001 GCACGCAGGGGGGACCGGGCCCATCACCGGCTTGCGCATTCTGCCTTTCCAATCGGCTGAGCGCC
66 GCACGCAGGGGGGACCGGGCCCATCACCGGCTTGCGCATTCTGCCTTTCCAATCGGCTCAGCGCC
* * * *
20963066 CGTACTCCTGTTTCATGGGTTGGCTTAG
131 CGCACGCCTATTTCATGGGTTGACTTAG
* * * * * * * *
20963094 GCATACAGAGTTGATT-TCATGTCTAAGCCCCAGCT-GGACCGAGGGTTGTGGCAGTGGGATCTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGATCGGACCGAGGGTTGCGGCAGTAGGATCGG
* * * ** *
20963157 TAGCACGCAGAGGGGGACCGGGCCGATC-CTCGGCTTGTGCATTAC-GCCTTTCCGGTTGGCTCA
64 CAGCACGCAG-GGGGGACCGGGCCCATCAC-CGGCTTGCGCATT-CTGCCTTTCCAATCGGCTCA
* *
20963220 GTGCCCGCACG-CTCATTTCGTGGGTTGACTTAG
126 GCGCCCGCACGCCT-ATTTCATGGGTTGACTTAG
* * *
20963253 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGATCGGACCGAGGGTTGCGG
20963304 TAGCAAGATC
Statistics
Matches: 168, Mismatches: 34, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
157 2 0.01
158 59 0.35
159 104 0.62
160 3 0.02
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGATCGGACCGAGGGTTGCGGCAGTAGGATCGGCA
GCACGCAGGGGGGACCGGGCCCATCACCGGCTTGCGCATTCTGCCTTTCCAATCGGCTCAGCGCC
CGCACGCCTATTTCATGGGTTGACTTAG
Found at i:20963801 original size:26 final size:26
Alignment explanation
Indices: 20963765--20963814 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
20963755 GTTGACTTAG
20963765 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20963791 GCATACGGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATCCCCAGTCT
20963815 GAGATCAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20964140 original size:26 final size:26
Alignment explanation
Indices: 20964111--20964160 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20964101 GACTTAGGCA
20964111 TACGGAGTTCATCCCCAGTCTAAGCT
1 TACGGAGTTCATCCCCAGTCTAAGCT
*
20964137 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
20964161 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCT
Found at i:20964384 original size:343 final size:343
Alignment explanation
Indices: 20963751--20964477 Score: 886
Period size: 343 Copynumber: 2.1 Consensus size: 343
20963741 TGCTCATTTC
* *
20963751 GTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTG
1 GTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * * ** *
20963816 AGATCAAACCATATCGAGGGTTATGGCAGCAGGATCGGTAGCACGCAGGGGGGGTCAGGCTGATC
66 AGATCAAACCAGACCGAGGGTTATGACACCAAGATCGGTAGCACGCAGGGGAGACCAGGCCGATC
** * * *
20963881 CCTGGCTTACGCATTCTGCCTCTCTGGCCGACTGAGCGCTCGCACACCCGTTTCGTGGGTTGGCT
131 CCCAGCTTACGCATTCTGCCTCTCCGGCAGACTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCT
* *
20963946 TAGGCATAGGGAGTTCATTCCATGTCCAAGCCCTAGCCGGACAGAGGGTTGTGGCAGCGGGATCG
196 TAGGCATAGGGAGTTCATTCCATGTCCAAGCCCCAGCCGGACAGAGGGTTGTGGCAGCGGGACCG
** * * * * *
20964011 GCAGCATTTAGAGGGGGACCGAGTCGATCCTCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAA
261 GCAGCACGTAAAGGGGGACCGAGCCGATCCTCGACTTGCACATTATGCCTCTTCGACCGGCTCAA
20964076 CGCCCACACACCT-GTTCT
326 CGCCCACAC-CCTCGTTCT
*
20964094 GTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTCTA
1 GTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
** * * * * *
20964159 AGATCGGACCGGACCGAGGGTTGTGATACCAAGATCGGTAGCACGGAGGGTAGACC-GAGCCGAT
66 AGATCAAACCAGACCGAGGGTTATGACACCAAGATCGGTAGCACGCAGGGGAGACCAG-GCCGAT
* * * *
20964223 CCCCAGCTTACGTATTCTGCTTCTCCGGTCAG-TTGAGCGCCCGCACGCCCGTTTTCG-GGGTTG
130 CCCCAGCTTACGCATTCTGCCTCTCCGG-CAGACTGAGCGCCCGCACACCCG-TTTCGTGGGTTG
* * * *
20964286 GCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGGA
193 GCTTAGGCATAGGGAGTTCATTCCATGTCCAAGCCCCAGCCGGACAGAGGGTTGTGGCAGCGGGA
* * * * * *
20964351 CCGGCAGCACGTAAATGGGGACCGGGCCGATCCTTGATTTGCATATTATGCCTCTTCGGCCGGCT
258 CCGGCAGCACGTAAAGGGGGACCGAGCCGATCCTCGACTTGCACATTATGCCTCTTCGACCGGCT
* * * *
20964416 CAGCGCCCGCACGCTCGTTTT
323 CAACGCCCACACCCTCGTTCT
* * * * *
20964437 ATGGGTTGACTTATGCAAATGGAGTTCATTCCCAGTCTAAG
1 GTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
20964478 ATTAGACCAA
Statistics
Matches: 324, Mismatches: 56, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
342 3 0.01
343 314 0.97
344 7 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (343 bp):
GTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
AGATCAAACCAGACCGAGGGTTATGACACCAAGATCGGTAGCACGCAGGGGAGACCAGGCCGATC
CCCAGCTTACGCATTCTGCCTCTCCGGCAGACTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCT
TAGGCATAGGGAGTTCATTCCATGTCCAAGCCCCAGCCGGACAGAGGGTTGTGGCAGCGGGACCG
GCAGCACGTAAAGGGGGACCGAGCCGATCCTCGACTTGCACATTATGCCTCTTCGACCGGCTCAA
CGCCCACACCCTCGTTCT
Found at i:20964645 original size:26 final size:26
Alignment explanation
Indices: 20964609--20964661 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20964599 GTTGGCTTAG
*
20964609 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
*
20964635 GCATACAGAGTTCGTTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
20964661 G
1 G
20964662 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:20965551 original size:26 final size:26
Alignment explanation
Indices: 20965501--20965553 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20965491 GTTGAATTAG
* *
20965501 GCATATGGAGTTCATCCCTGATCTAA
1 GCATACGGAGTTCATCCCAGATCTAA
20965527 GCATACGGAGTTCATTCCCAG-TCTAA
1 GCATACGGAGTTCA-TCCCAGATCTAA
20965553 G
1 G
20965554 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAGATCTAA
Found at i:20965834 original size:159 final size:159
Alignment explanation
Indices: 20965600--20966381 Score: 449
Period size: 158 Copynumber: 4.9 Consensus size: 159
20965590 CAGCACGCAT
* * * * * * *
20965600 GGGGGACCGTGCCGATCCTCGGCTTGAGCATTTTGCCTCTCCGGTCGGTTGAGTGCCCGCATGCC
1 GGGGGACCGGGCCGATCCCCGGCTTGAGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCC
* * * * *
20965665 CGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAGGCGGACCGAGGG
66 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCCAGGG
20965730 TTGTGGCAGTGGGACCGGTCGCACTCAGA
131 TTGTGGCAGTGGGACCGGTCGCACTCAGA
* * * * *
20965759 GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTTTCTGGTTGGCTGAGCGCCCGCACGCC
1 GGGGGACCGGGCCGATCCCCGGCTTGAGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCC
20965824 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCCAGGG
66 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCCAGGG
* * * * * *
20965889 TTGTGGCAGCGAGA-CTGACAGTA-TACCGA
131 TTGTGGCAGTGGGACCGGTC-GCACT-CAGA
* ** * * * * * * *
20965918 -GGGGATCGAACTGATCCCCGACTTGTGCATTATGCCTCTCCGG-CTGGCTCAGCGGCCGCACGC
1 GGGGGACCGGGCCGATCCCCGGCTTGAGCATTCTACCTCTCCGGTC-GGCTGAGCGCCCGCACGC
* * * ** ** * * * **
20965981 TCTTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCGGACTGAACTGA
65 CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCCA
* *** * *
20966044 GGGTTGTGGTAGCAAGATC-GACAGCACGT-AG-
128 GGGTTGTGGCAGTGGGACCGGTC-GCAC-TCAGA
** * * * * * * * * * *
20966075 GGGGGACCGAACCAATCCTCGGCTTGCGCGTTCTGCCTCTCTGATCGACTGAGTGCCCGCACGCT
1 GGGGGACCGGGCCGATCCCCGGCTTGAGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCC
* * * ** * *
20966140 CGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGA-CGAG
66 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCCAG
* *** *
20966202 GGTTGCGGTAGCAGGTCCAACAGCAGGATCG-ACAGCACGCA
129 GGTT---GTGGCA-GTGGGAC--C-GG-TCGCAC-TCA-G-A
** * * * * *** *
20966243 GGGGGGACCGGGCCGATCTTCGGCTTGCGCATTCTACCTCTTCGGCCGGTTGAGC-AATGTACGC
1 -GGGGGACCGGGCCGATCCCCGGCTTGAGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGC
* * * * * * *
20966307 TCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGG
65 CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCCAGG
20966372 GTTGTGGCAG
130 GTTGTGGCAG
20966382 CAGGACCGAC
Statistics
Matches: 488, Mismatches: 108, Indels: 48
0.76 0.17 0.07
Matches are distributed among these distances:
157 9 0.02
158 217 0.44
159 135 0.28
160 5 0.01
161 2 0.00
163 1 0.00
164 2 0.00
165 4 0.01
166 7 0.01
167 3 0.01
168 51 0.10
169 52 0.11
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.24
Consensus pattern (159 bp):
GGGGGACCGGGCCGATCCCCGGCTTGAGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCC
CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCCAGGG
TTGTGGCAGTGGGACCGGTCGCACTCAGA
Found at i:20966048 original size:158 final size:158
Alignment explanation
Indices: 20965527--20966189 Score: 477
Period size: 158 Copynumber: 4.2 Consensus size: 158
20965517 CCTGATCTAA
** * * * * * * *
20965527 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG-ACCGAGGGTTGCGGTAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCCAGCCGAACCCAGGGTTGTGGCAGCAAGATCGAC
* ** * * * * *
20965591 AGCACGCATG-GGGGACCGTGCCGATCCTCGGCTTGAGCATTTTGCCTCTCCGG-TCGGTTGAGT
66 AGCAC-TA-GAGGGGACCGAACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGAT-GGCTGAGC
* * * *
20965654 GCCCGCATGCCCGTTTTGTGGGTTGGCTTAG
128 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * *** *
20965685 GCATAGGGAGTTTATT-CCATGTCTAAG-CCCCAGGCGGACCGAGGGTTGTGGCAGTGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCCCAGCCGAACCCAGGGTTGTGGCAGCAAGATC-G
* * ** * * * *
20965748 TC-GCACTCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTTTCTGGTTGGCTGAG
64 ACAGCACT-AGA-GGGGACCGAACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGATGGCTGAG
*
20965812 CGCCCGCACGCCCATTTCGTGGGTTGGCTTAG
127 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * *
20965844 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCGGACCCAGGGTTGTGGCAGCGAGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCCCAGCCGAACCCAGGGTTGTGGCAGCAAGATC-G
* * * * * * * *
20965906 ACAGTA-TACCGAGGGGATCGAACTGATCCCCGACTTGTGCATTATGCCTCTCCGGCTGGCTCAG
64 ACAGCACTA--GAGGGGACCGAACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGATGGCTGAG
* * *
20965970 CGGCCGCACGCTCTTTTCGTGGGTTGACTTAG
127 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * ** *
20966002 GCATACAGAGTTCATTCCCAGTCTAAGATCGGA-CTGAACTGAGGGTTGTGGTAGCAAGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCCAGCCGAACCCAGGGTTGTGGCAGCAAGATCGAC
* * * * * * *
20966066 AGCACGTAGGGGGGACCGAACCAATCCTCGGCTTGCGCGTTCTGCCTCT-CTGATCGACTGAGTG
66 AGCAC-TAGAGGGGACCGAACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGAT-GGCTGAGCG
* *
20966130 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
*
20966160 GCATATGGAGTTCATTCCCAGTCTAAGATC
1 GCATACGGAGTTCATTCCCAGTCTAAGATC
20966190 AGACCAGACG
Statistics
Matches: 406, Mismatches: 83, Indels: 32
0.78 0.16 0.06
Matches are distributed among these distances:
157 11 0.03
158 257 0.63
159 135 0.33
160 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCCCAGCCGAACCCAGGGTTGTGGCAGCAAGATCGAC
AGCACTAGAGGGGACCGAACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGATGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:20966338 original size:168 final size:171
Alignment explanation
Indices: 20966133--20966527 Score: 433
Period size: 168 Copynumber: 2.3 Consensus size: 171
20966123 CTGAGTGCCC
* *
20966133 GCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAG-ATCAGACCAG
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCACCAG-CCAG
* * * * * *
20966197 A-CGAGGGTTGCGGTAGCAGGTCCAACAGCAGGATCGACAGCACG-CAGGGGGGACCGGGCCGAT
65 ACCGAGGGTTGCGGCAGCAGGACCAACAGCAGGATCGACAGAAAGTAAAGGGGGACCGGGCCGAT
* * * *
20966260 -CTTCGGCTTGCGCATTCTACCTCTTCGGCCGGTTGAGC-AAT
130 CCCT-AGCTTGCGCATTATACCTCTTCGACCGGTTGAGCGAAT
* * * *
20966301 GTACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATT-CCATGTCTAAGCCCCAGTCGG
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAGCACCAGCCAG
* * * ** *
20966365 ACCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGGTAGAAAGTAAAGGGGGACCGGGCTGAT
65 ACCGAGGGTTGCGGCAGCAGGACCAACAGCAGGATCGACAGAAAGTAAAGGGGGACCGGGCCGAT
* * **
20966430 CCCTAGCTTGCGCATTATGCCTTTTCGACCGGTTGAGCGCCT
130 CCCTAGCTTGCGCATTATACCTCTTCGACCGGTTGAGCGAAT
* ** * * *
20966472 GCACGCTCATTTTGTGGGTTGAGTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCA
20966528 TACGGAGTTC
Statistics
Matches: 186, Mismatches: 34, Indels: 11
0.81 0.15 0.05
Matches are distributed among these distances:
167 3 0.02
168 51 0.27
169 37 0.20
170 45 0.24
171 47 0.25
172 3 0.02
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (171 bp):
GCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCACCAGCCAGA
CCGAGGGTTGCGGCAGCAGGACCAACAGCAGGATCGACAGAAAGTAAAGGGGGACCGGGCCGATC
CCTAGCTTGCGCATTATACCTCTTCGACCGGTTGAGCGAAT
Found at i:20973428 original size:159 final size:159
Alignment explanation
Indices: 20973129--20973430 Score: 401
Period size: 159 Copynumber: 1.9 Consensus size: 159
20973119 GGTTGGCTCA
* * * *
20973129 TGACACCCGACTTGCGCATTATGCCTCTCCAACCGGCTCAGCATCTGCACGCTCGTTTCATGGGT
1 TGACACCCGACTTGCGCATTATGCCTCTCCAACCAGCTCAGCACCCGAACGCTCGTTTCATGGGT
* * * * ** *
20973194 TGACTTAGGCATACGGAGTTCATTCCCAGTCTATGATCAAACCGAACTGAGGGTTGTGGTAGCAG
66 TGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAAACCGAACCGAGGGTTGCAGCAGCAG
20973259 GACCGATAGCACGTAGAGGGGGATTGAGT
131 GACCGATAGCACGTAGAGGGGGATTGAGT
* * * * *
20973288 TGACCCCCGGCTTGCGCATTATGCCTC-CCTGATCAGCTCAGCACCCGAACGCTCGTTTCGTGGG
1 TGACACCCGACTTGCGCATTATGCCTCTCC-AACCAGCTCAGCACCCGAACGCTCGTTTCATGGG
*
20973352 TTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGAACC-AGACCGAGGGTTGCAGCAGC
65 TTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAAACCGA-ACCGAGGGTTGCAGCAGC
**
20973416 AGGATTGATAGCACG
129 AGGACCGATAGCACG
20973431 CAGGGGGACC
Statistics
Matches: 122, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
158 3 0.02
159 119 0.98
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (159 bp):
TGACACCCGACTTGCGCATTATGCCTCTCCAACCAGCTCAGCACCCGAACGCTCGTTTCATGGGT
TGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAAACCGAACCGAGGGTTGCAGCAGCAG
GACCGATAGCACGTAGAGGGGGATTGAGT
Found at i:20973556 original size:26 final size:26
Alignment explanation
Indices: 20973520--20973570 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20973510 TGGCTTAGGC
20973520 ATACAGAGTTCATTC-CATGTCTAAGT
1 ATACAGAGTTCATTCTCAT-TCTAAGT
*
20973546 ATACGGAGTTCATTCTCATTCTAAG
1 ATACAGAGTTCATTCTCATTCTAAG
20973571 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (26 bp):
ATACAGAGTTCATTCTCATTCTAAGT
Found at i:20974119 original size:26 final size:26
Alignment explanation
Indices: 20974069--20974121 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20974059 GTTGGCTTAG
* *
20974069 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGATCATTCCATATCTAA
20974095 GCATACGGAGATCATTCCCA-ATCTAA
1 GCATACGGAGATCATT-CCATATCTAA
20974121 G
1 G
20974122 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGATCATTCCATATCTAA
Found at i:20975088 original size:159 final size:159
Alignment explanation
Indices: 20974817--20975316 Score: 542
Period size: 158 Copynumber: 3.2 Consensus size: 159
20974807 CCCAGTCTAA
* * * * * *
20974817 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGATCAAACCGAGGGTTGCGACAGTAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
** * * *
20974881 AACACACAGA-GGGGATTGGGCCAATCCTCGGCTTGTGCATTCTACCTCTCCAACTGGCTAAGTG
65 AACACACAGAGGGGGACCGGGCCAATCCTCGGCTTGTGCATTCTGCCTCTCCAACCGGCTAAGCG
*
20974945 CCCGCATGCCCGTTTCGTGGGTTGGCTTAG
130 CCCGCATGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
20974975 GCATAGGGAGTTCATTCCATGTGTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCGGGATTGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * ** *
20975039 AGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCGGACCGGCTCAGCG
65 AACACACAGAGGGGGACCGGGCCAATCCTCGGCTTGTGCATTCTGCCTCTCCAACCGGCTAAGCG
* * *
20975104 CCCGCACGCTCATTTCGTGGGTTGACTTAG
130 CCCGCATGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
20975134 GCATACGGAGTTCATTCCCA-ATCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * *
20975198 AACACACAG-GGGGGACCGAGCCCATCCCCGGCTTGTACATTCTGCCTCTCCAACCAGCTGAGCG
65 AACACACAGAGGGGGACCGGGCCAATCCTCGGCTTGTGCATTCTGCCTCTCCAACCGGCTAAGCG
* *
20975262 CCCGCATGTTCGTTTCATGGGTTGGCTTAG
130 CCCGCATGCTCGTTTCGTGGGTTGGCTTAG
*
20975292 GCATATGGAGTTCATTCCATGTCTA
1 GCATACGGAGTTCATTCCATGTCTA
20975317 CGCATACGGA
Statistics
Matches: 276, Mismatches: 60, Indels: 12
0.79 0.17 0.03
Matches are distributed among these distances:
157 6 0.02
158 144 0.52
159 123 0.45
160 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
ACACACAGAGGGGGACCGGGCCAATCCTCGGCTTGTGCATTCTGCCTCTCCAACCGGCTAAGCGC
CCGCATGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20975444 original size:184 final size:184
Alignment explanation
Indices: 20975134--20975473 Score: 484
Period size: 184 Copynumber: 1.8 Consensus size: 184
20975124 GTTGACTTAG
* *
20975134 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCAGGATCGACA
*
20975199 ACACACAGGGGGGACCGAGCCCATCCCCGGCTTGTACATTCTGCCTCTCCAACCAGCTGAGCGCC
66 ACACACAGGGGGGACCGAGCCCATCCCCGGCTTGTACATTCTGCCTCTCCAACCAGCTGAGCACC
**
20975264 CGCATGTTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAC
131 CGCATGCCCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAC
* * * *
20975318 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCAGGATCGACA
* * * ** * * **
20975383 GCACGCAGGGGGGACCGGGCTGATCCCTGGCTTGCT-CATTCTGCCTCTCCGACTGGCTGAGCAC
66 ACACACAGGGGGGACCGAGCCCATCCCCGGCTTG-TACATTCTGCCTCTCCAACCAGCTGAGCAC
**
20975447 CCGCATGCCCGTTTTGTGGGTTGGCTT
130 CCGCATGCCCGTTTCATGGGTTGGCTT
20975474 TGGCTGAGTG
Statistics
Matches: 135, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
184 134 0.99
185 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCAGGATCGACA
ACACACAGGGGGGACCGAGCCCATCCCCGGCTTGTACATTCTGCCTCTCCAACCAGCTGAGCACC
CGCATGCCCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAC
Found at i:20976055 original size:26 final size:26
Alignment explanation
Indices: 20976003--20976055 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20975993 GTTGGCTTAG
* *
20976003 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTATAA
20976029 GCATACGAAGTTCATTCCCA-GTATAA
1 GCATACGAAGTTCATT-CCATGTATAA
20976055 G
1 G
20976056 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTATAA
Found at i:20976933 original size:355 final size:348
Alignment explanation
Indices: 20976289--20977081 Score: 885
Period size: 355 Copynumber: 2.3 Consensus size: 348
20976279 AGAAGGGGAC
* * * * *
20976289 CGGACTGATCCCCGACTTGCCCATTATGCCTCTCTGGTCGGCTGAGTGCCCGCATGCTCATTTCA
1 CGGAGTGATCCCCGGCTTGCGCATTATGCCT-TC-GGTCGGCTCAGTGCCCGCACGCTCATTTCA
* * * * *
20976354 TGGGTTGACTTAGGCATACGCAGTTCATCCCCA-GTCTAACCATACAGAGTTCATTCGCAGTCTA
64 TGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * ** *
20976418 AGATCGATCAGACCAAAGGTTGCGATAG--T----AGGATC-GG--C-T-GCACGTAGGGTAGTC
128 AGATCGAACCGACCGAAGGTTGCGGTAGCATGACCAGCAGCAGGATCGTAGCACGCAGGGGGGAC
* * ** * * *
20976472 CGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAATTGACTGAGTGCCCGCATGCCCGTTTCC
193 CGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTCA
* *
20976537 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGACTAAGCCCTAGCCGGACCGCGGTATGTGGC
258 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC-AGCCGGACAG-GGT-TGTGGC
20976602 AGCGGGACCGGCAGCACGTAGAGGAGGAT
320 AGCGGGACCGGCAGCACGTAGAGGAGGAT
* * *
20976631 CGGGGTGATCCCCGGCTTGCGCATTATGCCAGTTCGGTTGGCTCAGTGCCCGCACGCTCGTTTCA
1 CGGAGTGATCCCCGGCTTGCGCATTATGCC--TTCGGTCGGCTCAGTGCCCGCACGCTCATTTCA
** *
20976696 TGGGTTGACTTTTGCACACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
64 TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
*
20976761 GATCGAACCGTACCGAAGGTTACGGTAGCATGACCAGCAGCAGGATCGATAGCACGCAGGGGGGA
129 GATCGAACCG-ACCGAAGGTTGCGGTAGCATGACCAGCAGCAGGATCG-TAGCACGCAGGGGGGA
* * * * *
20976826 CCAAGCCAATCCCCGGCTTACGCATTCTGCCTCTCCGGCCAACTGAGCGCCCGTACGCCCGTTTC
192 CCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTC
20976891 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTAAGGGTTGTGG
257 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCAGCCGGAC--AGGGTTGTGG
* * *
20976956 TAGCGAGACCGACAGCACGTAGA-GAGGGAT
319 CAGCGGGACCGGCAGCACGTAGAGGA-GGAT
* * * ** *
20976986 -TGAGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCACCCGAACGCTCATTTC
1 CGGAGT-GATCCCCGGCTTGCGCATTATGCCT-T-CGGTCGGCTCAGTGCCCGCACGCTCATTTC
20977050 ATGGGTTGACTTAGGCATACGGAGTTCATTCC
63 ATGGGTTGACTTAGGCATACGGAGTTCATTCC
20977082 CAATCTAAGA
Statistics
Matches: 372, Mismatches: 56, Indels: 33
0.81 0.12 0.07
Matches are distributed among these distances:
341 3 0.01
342 113 0.30
343 16 0.04
344 1 0.00
345 1 0.00
349 4 0.01
350 2 0.01
352 1 0.00
353 1 0.00
354 7 0.02
355 216 0.58
356 6 0.02
357 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (348 bp):
CGGAGTGATCCCCGGCTTGCGCATTATGCCTTCGGTCGGCTCAGTGCCCGCACGCTCATTTCATG
GGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCGAACCGACCGAAGGTTGCGGTAGCATGACCAGCAGCAGGATCGTAGCACGCAGGGGGGACCGA
GCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTCATGG
GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGGACAGGGTTGTGGCAGCGGG
ACCGGCAGCACGTAGAGGAGGAT
Found at i:20977258 original size:26 final size:26
Alignment explanation
Indices: 20977222--20977274 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20977212 TTGGCTTTAG
20977222 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
20977248 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
20977274 G
1 G
20977275 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:20978520 original size:26 final size:26
Alignment explanation
Indices: 20978484--20978536 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20978474 GTTGACTTAG
*
20978484 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
20978510 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
20978536 G
1 G
20978537 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:20979226 original size:26 final size:26
Alignment explanation
Indices: 20979196--20979248 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20979186 GTTAACTTAG
*
20979196 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
20979222 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
20979248 G
1 G
20979249 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:20979512 original size:158 final size:158
Alignment explanation
Indices: 20979222--20979555 Score: 431
Period size: 158 Copynumber: 2.1 Consensus size: 158
20979212 CCCAGTCTAA
* * *
20979222 GCATACAGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGTGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGAACCAAGGGTTGTGACAGCAGGATCGACA
* * **
20979287 GCACGCAGAGGGGACCAGGTCGATCCCCGGCTTGCACATTATGCCTCTCTGACTGACTCAATGCC
66 GCACGCAGAGGGGACCAGGTCGATCCCCAGCTTGCACATTATACCTCTCTGACTGACTCAACACC
* *
20979352 CGAACACTCGTTTTGTGGGTT-GACTTAG
131 CGAACACTCATTTCGTGGGTTGGA-TTAG
* * *
20979380 GCATACGGAGTTCATTCCCAGTTTAAGATCGGATCGAACCAAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGAACCAAGGGTTGTGACAGCAGGATCGACA
* * * * * *
20979445 GCACGTAG-GAGGGACCAGGTCGATCCCCAGCTTGCGCATTCTACCTCTCTGA-TCGGCTGAGCA
66 GCACGCAGAG-GGGACCAGGTCGATCCCCAGCTTGCACATTATACCTCTCTGACT-GACTCAACA
**
20979508 CCCGAATGCTCATTTCGTGGGTTGGATTAG
129 CCCGAACACTCATTTCGTGGGTTGGATTAG
*
20979538 GCTTACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
20979556 ATGTCTAAGT
Statistics
Matches: 152, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
157 2 0.01
158 148 0.97
159 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGAACCAAGGGTTGTGACAGCAGGATCGACA
GCACGCAGAGGGGACCAGGTCGATCCCCAGCTTGCACATTATACCTCTCTGACTGACTCAACACC
CGAACACTCATTTCGTGGGTTGGATTAG
Found at i:20980083 original size:26 final size:26
Alignment explanation
Indices: 20980053--20980105 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20980043 GTTGGCTTAG
*
20980053 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
20980079 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20980105 G
1 G
20980106 AGTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20980478 original size:26 final size:26
Alignment explanation
Indices: 20980448--20980500 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20980438 GTTGACTTAG
20980448 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20980474 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20980500 G
1 G
20980501 ATGAGAACGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20981286 original size:158 final size:157
Alignment explanation
Indices: 20981050--20981348 Score: 418
Period size: 158 Copynumber: 1.9 Consensus size: 157
20981040 CAGGATCGGT
* * *
20981050 AGCACGTAGAGGGGACCGAGCCAATCCTCGGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGCGC
1 AGCACGCAGAGGGGACCAAGCCAATCCCCGGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGCGC
* * * * * *
20981115 CCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAATCA
66 CCGCACGCCCGTTTCATGGGTTGGCCTAGGCATACGAAGATCATTCCATGTCTAAGCCCCAATCA
20981180 GACCGAGGGTTCTGGAAGTGGGACCGC
131 GACCGAGGGTTCTGGAAGTGGGACCGC
* * *
20981207 AGCACGCAGAAGGGGACCAAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGTG
1 AGCACGCAG-AGGGGACCAAGCCAATCCCCGGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGCG
* * ** * *
20981272 CTCGCACGCTCGTTTTGTGGGTTGGCCTAGGCATACGAAGATCATTCCATGTCTAAGCCCTAGTC
65 CCCGCACGCCCGTTTCATGGGTTGGCCTAGGCATACGAAGATCATTCCATGTCTAAGCCCCAATC
*
20981337 GGACCGAGGGTT
130 AGACCGAGGGTT
20981349 GTGGCAGCAG
Statistics
Matches: 122, Mismatches: 19, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
157 8 0.07
158 114 0.93
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.22
Consensus pattern (157 bp):
AGCACGCAGAGGGGACCAAGCCAATCCCCGGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGCGC
CCGCACGCCCGTTTCATGGGTTGGCCTAGGCATACGAAGATCATTCCATGTCTAAGCCCCAATCA
GACCGAGGGTTCTGGAAGTGGGACCGC
Found at i:20981592 original size:526 final size:508
Alignment explanation
Indices: 20980430--20981785 Score: 1400
Period size: 526 Copynumber: 2.6 Consensus size: 508
20980420 TGCACACTTT
*
20980430 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * * * * *
20980495 TGTAAGATGAGAAC-GAACTGAAGGTTGCGGTAGTAGGATCGATAGCACGCAGGGGGGATCGGGC
66 TGTAAGATCAGATCGGATC-GAGGGTTGCAGCAGCAGGATCGATAGCACGTA-GGGGGACCGGGC
* * *
20980559 CGGTCCCCGGCTTACGCATTCTACCTCTTCGACCGGCTGAGTGCCCGCATGCCCGTTTCATGGGT
129 CGAT-CCCGGCTTACGCATTCTGCCTCTTCGACCGGCTGAGTGCCCG-ACGCCCGTTTCATGGGT
* * * * *
20980624 TCGCTTAGGCATAGGGAGTTCGTTCAATGTCTAAGCCCCAGCCGGACCAATGGTTGTGGCAA-CG
192 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGG-AAGCG
* * * * * * * * *
20980688 GGATCGGTAGCACACAGAAAGGGACCAAGCAAATCCCTGGCCTGCGCATTATGCCTCTTCAACAG
256 GGA-CCGCAGCACGCAGAAGGGGACCAAGCAGATCCCCGGCTTGCGCATTCTGCCTCTCCAACAG
* * * *
20980753 GCTCAGCACTCGAATGCTCATTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAG
320 GCTCAGCACTCGAACGCTCATTTCATGGGTTGACCTAGGCATAGAGAGATCATTCCCAGTCTAAG
* * * * * * * **
20980818 ATCGGATCGGATCGAGGGTTGCAGTAGTAGGACCAGTAGTAGGATCGTTAGCACGCAGGGGGACT
385 ACCAGATCGGACCGAGGGTTGCAGCAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGACT
* * * **
20980883 GGGCTGATCCTCGGCTTGGGCATTCTGCCTCTTCGGCCAGCTGAGCGCCCATACACTCA
450 GGGCTGATCCCCAGATTACGCATTCTGCCTCTTCGGCCAGCTGAGCGCCCATACACTCA
* * * * *
20980942 TTTTATGGGTTGACTTAGGCATACAGAGCTCATCCCCAATCTAAGCATACGGAGTTCATTCACAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
20981007 TCTAAGATC-GAATCGGATCGAGGGTTGCAACAGCAGGATCGGTAGCACGTAGAGGGGACCGAGC
66 TGTAAGATCAG-ATCGGATCGAGGGTTGCAGCAGCAGGATCGATAGCACGTAG-GGGGACCGGGC
* * *
20981071 CAATCCTCGGCTTACGCATTCTGCCTC-TCCAGCCGGCTGAGCGCCCGTACGCCCGTTTCATGGG
129 CGATCC-CGGCTTACGCATTCTGCCTCTTCGA-CCGGCTGAGTGCCCG-ACGCCCGTTTCATGGG
* ** * * *
20981135 TTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAATCAGACCGAGGGTTCTGGAAGTG
191 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGAAGCG
* * *
20981200 GGACCGCAGCACGCAGAAGGGGACCAAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGG
256 GGACCGCAGCACGCAGAAGGGGACCAAGCAGATCCCCGGCTTGCGCATTCTGCCTCTCCAACAGG
* ** * * ** *
20981265 CTGAGTGCTCGCACGCTCGTTTTGTGGGTTGGCCTAGGCATACGA-AGATCATT-CCATGTCTAA
321 CTCAGCACTCGAACGCTCATTTCATGGGTTGACCTAGGCATA-GAGAGATCATTCCCA-GTCTAA
* **
20981328 GCCCTAG-TCGGACCGAGGGTTGTGGCAGCAGGACC-GACAGCAGGATCGACAGCAC-CTAGAGA
384 GACC-AGATCGGACCGAGGGTTGCAGCAGCAGGACCAG-CAGCAGGATCGACAGCACGC-AG-G-
* *
20981390 GGGA-TCGGGCTGATCCCCAGATTACGCATTGTGCCTCTTCGACTGGCCTTTTCGATCGGTTGAG
444 GGGACT-GGGCTGATCCCCAGATTACGCATTCTGCCTCTT---C-GG-C----C-A---GCTGAG
* * *
20981454 TGCCCGTACGCTCA
495 CGCCCATACACTCA
* **
20981468 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACCAAGTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * *
20981533 TGTAAGATCAGATCGGATCGACGGGTTGTAGCAGCAGGATCGACAGTACGTAGGGGGACCGGGCC
66 TGTAAGATCAGATCGGATCGA-GGGTTGCAGCAGCAGGATCGATAGCACGTAGGGGGACCGGGCC
* * * * *
20981598 GATCCCTGGCTTGCGCATTTTGCCTCTTCGATCGACTGAGTGCCCAGACGTCCGTTTCATGGGTT
130 GATCCC-GGCTTACGCATTCTGCCTCTTCGACCGGCTGAGTGCCC-GACGCCCGTTTCATGGGTT
* *
20981663 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGG
193 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGAAGCGGG
* ** * * * *
20981728 ACCGGCAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGTGTATTCTACCTCTCC
258 ACC-GCAGCACGCAGAAGGGGACCAAGCAGATCCCCGGCTTGCGCATTCTGCCTCTCC
20981786 GGTTGGTTGA
Statistics
Matches: 690, Mismatches: 121, Indels: 51
0.80 0.14 0.06
Matches are distributed among these distances:
510 5 0.01
511 145 0.21
512 210 0.30
513 34 0.05
516 1 0.00
517 2 0.00
518 1 0.00
522 1 0.00
523 1 0.00
525 1 0.00
526 211 0.31
527 78 0.11
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (508 bp):
TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TGTAAGATCAGATCGGATCGAGGGTTGCAGCAGCAGGATCGATAGCACGTAGGGGGACCGGGCCG
ATCCCGGCTTACGCATTCTGCCTCTTCGACCGGCTGAGTGCCCGACGCCCGTTTCATGGGTTGGC
TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGAAGCGGGACC
GCAGCACGCAGAAGGGGACCAAGCAGATCCCCGGCTTGCGCATTCTGCCTCTCCAACAGGCTCAG
CACTCGAACGCTCATTTCATGGGTTGACCTAGGCATAGAGAGATCATTCCCAGTCTAAGACCAGA
TCGGACCGAGGGTTGCAGCAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGACTGGGCTG
ATCCCCAGATTACGCATTCTGCCTCTTCGGCCAGCTGAGCGCCCATACACTCA
Found at i:20982723 original size:158 final size:156
Alignment explanation
Indices: 20982379--20982725 Score: 426
Period size: 158 Copynumber: 2.2 Consensus size: 156
20982369 GGATCAGACT
* * ** *
20982379 GGACTGAGGGTTGTGACAGCAAGATCGGTAGCACGCAAGGGGGACCGGGCCAATCCCCGGCTTGC
1 GGACTGAGGGTTGTGGCAGC-AGACCGACAGCACGCAAAGGGGACCGGGCCAATCCCCGGCTTGC
* * ** * *
20982444 GCATTCTGCCTCTCCGACTGGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGG
65 GCATTCTACCTCTCCGACCGGCTGAACGCCCGCACGCCCGTTTCATGGGTTGGCCTAGGCATACG
* * *
20982509 GAGTTCATTCCATGTCTAATCCCCAGC
130 AAGATCATTCCATGTCTAAGCCCCAGC
* * * * *
20982536 GGATTGAGGGTTATGGAAGTCAGACCGACAGCACGCAGAAGGGGATCGGGCCGATCCCCGGCTTG
1 GGACTGAGGGTTGTGGCAG-CAGACCGACAGCACGCA-AAGGGGACCGGGCCAATCCCCGGCTTG
* * * *
20982601 CGTATTCTACCTCTCCGGCCGGCTGAACGCCTGCACGCTCGTTTCATGGGTTGGCCTAGGCATAC
64 CGCATTCTACCTCTCCGACCGGCTGAACGCCCGCACGCCCGTTTCATGGGTTGGCCTAGGCATAC
20982666 GAAGATCATTCCATGTCTAAGCCCCAGTC
129 GAAGATCATTCCATGTCTAAGCCCCAG-C
*
20982695 GGACCGAGGGTTGTGGCAGCAGGA-CGACAGC
1 GGACTGAGGGTTGTGGCAGCA-GACCGACAGC
20982726 GGGATCAATA
Statistics
Matches: 159, Mismatches: 27, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
157 28 0.18
158 113 0.71
159 18 0.11
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (156 bp):
GGACTGAGGGTTGTGGCAGCAGACCGACAGCACGCAAAGGGGACCGGGCCAATCCCCGGCTTGCG
CATTCTACCTCTCCGACCGGCTGAACGCCCGCACGCCCGTTTCATGGGTTGGCCTAGGCATACGA
AGATCATTCCATGTCTAAGCCCCAGC
Found at i:20982878 original size:26 final size:26
Alignment explanation
Indices: 20982839--20982894 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
20982829 TGGGTTGACT
* *
20982839 TAAGCATACGGAGTTCATCCCCTGTC
1 TAAGCATACCGAGTTCATCCCCAGTC
*
20982865 TAAGCATACCGAGTTCATTCCCAGTC
1 TAAGCATACCGAGTTCATCCCCAGTC
20982891 TAAG
1 TAAG
20982895 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACCGAGTTCATCCCCAGTC
Done.