Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 199 of 402
Found at i:20983210 original size:159 final size:157
Alignment explanation
Indices: 20982868--20983254 Score: 425
Period size: 159 Copynumber: 2.4 Consensus size: 157
20982858 CCCTGTCTAA
* * * *
20982868 GCATACCGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGAGCAGATCGAACCGAGGGTTACGGCAGCAGGATCGACA
* * ** * *
20982933 GCACGTAAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGTTCGACTGAGCGCC
65 GCACGTAAGAGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGACTCAACGCC
* * * *
20982998 CGCACGCCCGTTTCATGGGTTGGCTTAG
130 CGAACACCCATTTCATGGGTTGACTTAG
* * * *
20983026 GTATACGGAGTTCATTCCATTTCTAAGCCGCAG-TCGAACCGAGGGTTATGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAG-AGCAGATCGAACCGAGGGTTACGGCAGCAGGATCGAC
* * * *
20983090 AGCACGTAAAGAGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAACG
64 AGCACGT-AAGAGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGACTCAACG
* * *
20983155 CCTGAACACTCATTTCGTGGGTTGACTTAG
128 CCCGAACACCCATTTCATGGGTTGACTTAG
*** * * * * *
20983185 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACCGAGGGTTACGGTAGCAAGATCGATA
1 GCATACGGAGTTCATTCC-AGTCTAAGAGCAGATCGAACCGAGGGTTACGGCAGCAGGATCGACA
20983250 GCACG
65 GCACG
20983255 CAGGGGGGAA
Statistics
Matches: 187, Mismatches: 37, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
157 3 0.02
158 56 0.30
159 127 0.68
160 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGAGCAGATCGAACCGAGGGTTACGGCAGCAGGATCGACAG
CACGTAAGAGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGACTCAACGCCC
GAACACCCATTTCATGGGTTGACTTAG
Found at i:20983744 original size:26 final size:26
Alignment explanation
Indices: 20983710--20983761 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20983700 GTTGACTTAG
20983710 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
20983736 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20983762 AATAAGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20984159 original size:26 final size:26
Alignment explanation
Indices: 20984130--20984182 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20984120 GTTGGCTTAG
*
20984130 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
20984156 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20984182 G
1 G
20984183 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20984375 original size:26 final size:26
Alignment explanation
Indices: 20984339--20984391 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20984329 GTTGACTTAG
20984339 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCC-GTCTAA
20984365 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCCGTCTAA
20984391 G
1 G
20984392 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCCGTCTAA
Found at i:20984867 original size:26 final size:26
Alignment explanation
Indices: 20984831--20984883 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20984821 GTTGGCTTAG
20984831 GCATACAGAGTTCATTCCAT-GTCTAA
1 GCATACAGAGTTCATT-CATAGTCTAA
*
20984857 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATTCATAGTCTAA
20984883 G
1 G
20984884 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCATAGTCTAA
Found at i:20985242 original size:26 final size:26
Alignment explanation
Indices: 20985213--20985263 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20985203 TGACTTAGGG
20985213 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
* *
20985239 ATACGGAGTTCATTCCCAGTGTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
20985264 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:20986840 original size:26 final size:26
Alignment explanation
Indices: 20986804--20986856 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20986794 GTTGACTTAG
20986804 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20986830 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20986856 G
1 G
20986857 ATCGGACAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20987302 original size:157 final size:155
Alignment explanation
Indices: 20986830--20987330 Score: 569
Period size: 159 Copynumber: 3.2 Consensus size: 155
20986820 CCCAGTCTAA
* * *
20986830 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGACAAGACCGAGGGTTGCGACAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGAC-GGACTGAGGGTTGC-A-AGCAGGATCGAT
* * * * * *
20986894 AGCATGCAGTGGGGACCGGGTCAATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
62 AGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGC
* *
20986959 CCGTACGCCCGTTTCGTGGGTTGGCTTAG
127 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * ** * **
20986988 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTGAGGGTTGTGGC-AGTGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCGGACGGACTGAGGG-T-T-GCAAGCAGGATCGAT
* * * ** *
20987052 AGCACGTAGAGGGGCACCGGGCCGATCCCTGACTTGTACATTCTGCCTCTCC-GATCGGCTGAGC
62 AGCACGCAG-GGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCT-GGCTGAGC
* *
20987116 GCCCGCACGCTCATTTCATGGGTTGGCTTAG
125 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
20987147 GCATACGGAGTTCATTCCATGTCTAAGATCGGATCGGACTGAGGGTTGACAAGCAGGATCGATAG
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CGGACTGAGGGTTG-CAAGCAGGATCGATAG
* *
20987212 CACGCAGGGGGGACCGTGCCGAT-CCTCGGCTTGCGCATTATGCCTCTCCGGCTGGCTGAGCGCC
64 CACGCAGGGGGGACCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCC
20987276 CGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CGCACGCTCGTTTCGTGGGTTGGCTTAG
20987304 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
20987331 CCTACAGAGT
Statistics
Matches: 281, Mismatches: 50, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
156 4 0.01
157 101 0.36
158 63 0.22
159 110 0.39
160 1 0.00
161 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACGGACTGAGGGTTGCAAGCAGGATCGATAGCA
CGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20988060 original size:26 final size:26
Alignment explanation
Indices: 20988024--20988076 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20988014 GTTGACTTAG
*
20988024 GCATATGGAGTTCATCCCCAGTATAA
1 GCATACGGAGTTCATCCCCAGTATAA
* *
20988050 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTATAA
20988076 G
1 G
20988077 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTATAA
Found at i:20988934 original size:26 final size:26
Alignment explanation
Indices: 20988904--20988956 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20988894 GTTGACTTAG
*
20988904 GCATACGGAGTTCATCCCCTGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20988930 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20988956 G
1 G
20988957 ATCAGATCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20989035 original size:880 final size:877
Alignment explanation
Indices: 20987337--20989114 Score: 2726
Period size: 880 Copynumber: 2.0 Consensus size: 877
20987327 TAAGCCTACA
* * ** *
20987337 GAGTTCATTCCCA-GTCGAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGTGCTGGT
1 GAGTTCATT-CCATGTCTAAGAGTTTGAGCCACGGCACACATGCTGGGCTCGAGCATGTGCTGGT
* *
20987401 GCCGCATTTTTTTCGCCCAGGGCACCATCGTCGAAGCTTCGTCAGAGAGCCTAACCGGCAGCATT
65 GCCGCATTTTTTTCGCCCAGGGCACCATC-TCCAAGCATCGTCAGAGAGCCTAACCGGCAGCATT
* *
20987466 GGGGGTTCTGGCGATTGGGGGGGCCGGGGGGTGTACACACATGATGTGCGATGGGTGCTGGTACT
129 GGGGGTTCTGACGATTGGGGGCGCCGGGGGGTGTACACACATGATGTGCGATGGGTGCTGGTACT
20987531 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCGTAAAGAGCATT
194 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCGTAAAGAGCATT
* * *
20987596 TGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
259 TGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAATGGGGACACTTTTTTCAAA
* ** *
20987661 CGGTCACAAAATCTTCTCCACTTTGTGTTTTTAGCTGAATTTTTTGTGCATGCCAATAAAAATAC
324 CGGTCACAAAATCATCTCCACTTTGAATTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATAC
** * *
20987726 AAGGATCATGTCTACCAAATGTTGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGAAC
389 AAGGATCACCTCGACCAAATGTTGGGAAAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGAAC
* *
20987791 CGTAAAAAGTTTCAAAAATCGTGAAAAAGAAAAACGGGTCGTCTTGCCATGAAACTTCACATGAA
454 CGCAAAAAGTTTCAAAAATCGTGAAAAAGAAAAACGGGTCGTCTTGCCACGAAACTTCACATGAA
* * *
20987856 GGCTTAGGGGACCATTGTATGAATTTACACGCCATAAAAATGGCATTGGCATGGTAGAAATATGA
519 GGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGA
* * *
20987921 AGATGTGCTTGAACCCACCTACCACCCGTTCGATCTCCTGCTTGCGCATCTTGCCTCTCTGGTCG
584 AGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCG
* *
20987986 GCTGAGTGCCTGCACGCTCATTTAATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTATAAG
649 GCTGAGCGCCTGCACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTATAAG
** *
20988051 CATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGATCAAGGGTTACGGCAGCAGGATCGGCAG
714 CATACGGAGTTCATTCCCAGTCTAAGATCAAACTAAACCAAGGGTTACGGCAGCAGGATCGGCAG
* * * **
20988116 CACGCAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTTCAGCCGGTTGAGTGCCC
779 CACGCAGGGGGGACCGGGCTCATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCACCC
* *
20988181 -TCGCGCCCATTTCGTGGGTTGGCTTAGGCATAGG
844 GT-ACGCCCATTTCATGGGTTGGCTTAGGCATAGG
* *
20988215 GAGTTCATTCCATGTCTAGGAGTTTGAGCCATGGCACACATGCTGGGCTCGAGCATGTGCTGGTG
1 GAGTTCATTCCATGTCTAAGAGTTTGAGCCACGGCACACATGCTGGGCTCGAGCATGTGCTGGTG
* * *
20988280 CCGCATTTTTTTCGCCCGGGGCACCAT-TACCAGAGCATCGTCGGAGAGCCTAACCGGCGGCATT
66 CCGCATTTTTTTCGCCCAGGGCACCATCT-CCA-AGCATCGTCAGAGAGCCTAACCGGCAGCATT
* * * *
20988344 GGGGGTTCTGATGATTGGGGGCGCCGGGGGGTGTGCGCACATGATGTGCTATGGGTGCTGGTACT
129 GGGGGTTCTGACGATTGGGGGCGCCGGGGGGTGTACACACATGATGTGCGATGGGTGCTGGTACT
* *
20988409 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
194 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACA-CCCCGTAAAGAGCAT
*
20988474 TTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAATGGGGACACTTTTTTCCA
258 TTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAATGGGGACACTTTTTTCAA
*
20988539 ACGGTCACAAAATCATCTCCACTTTGAATTTTTAGCTGAATTTTTTTTGCATGCCAACAAAAATA
323 ACGGTCACAAAATCATCTCCACTTTGAATTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATA
*
20988604 CAAGGATCACCTCGACCAAAT-TTGGGGAAAAAACTCTTTCTAAAAAAATTTTAAAAAATCTCGA
388 CAAGGATCACCTCGACCAAATGTT-GGGAAAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGA
** *
20988668 ACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACAT
452 ACCGCAAAAAGTTTCAAAAATCGTGAAAAAGA-AAAACGGGTCGTCTTGCCACGAAACTTCACAT
20988733 GAAGG-TGTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAAT
516 GAAGGCT-TAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAAT
*
20988797 ATGAAGATGTGCTTGAACCCACCTACGACCCGTTCGATCCCCGGCTTGCGCATCCTGCCTCTCTG
580 ATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTGCGCATCCTGCCTCTCTG
* * * *
20988862 GTCGGTTGAGCGTCC-GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCTGT
645 GTCGGCTGAGCG-CCTGCACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
* * * * * *
20988926 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGA-TCAAACCGAGGGTTGCGGCAGTAGGAT
709 ATAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACT-AAACCAAGGGTTACGGCAGCAGGAT
* * * * *
20988990 CGGGAGCACGCAGGGGGGATCGGGC-CATTCCCCGGCTTGCGCATTCTGCCTCTCCGGCCTGCTG
773 CGGCAGCACGCAGGGGGGACCGGGCTCA-TCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTG
*
20989054 AGCACCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGG
837 AGCACCCGTACGCCCATTTCATGGGTTGGCTTAGGCATAGG
20989095 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
20989115 CCCCAGCCGG
Statistics
Matches: 814, Mismatches: 75, Indels: 20
0.90 0.08 0.02
Matches are distributed among these distances:
876 1 0.00
877 5 0.01
878 217 0.27
879 222 0.27
880 366 0.45
881 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (877 bp):
GAGTTCATTCCATGTCTAAGAGTTTGAGCCACGGCACACATGCTGGGCTCGAGCATGTGCTGGTG
CCGCATTTTTTTCGCCCAGGGCACCATCTCCAAGCATCGTCAGAGAGCCTAACCGGCAGCATTGG
GGGTTCTGACGATTGGGGGCGCCGGGGGGTGTACACACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCGTAAAGAGCATTTG
AGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAATGGGGACACTTTTTTCAAACG
GTCACAAAATCATCTCCACTTTGAATTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAA
GGATCACCTCGACCAAATGTTGGGAAAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGAACCG
CAAAAAGTTTCAAAAATCGTGAAAAAGAAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGG
CTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAG
ATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGC
TGAGCGCCTGCACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTATAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCAAACTAAACCAAGGGTTACGGCAGCAGGATCGGCAGCA
CGCAGGGGGGACCGGGCTCATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGT
ACGCCCATTTCATGGGTTGGCTTAGGCATAGG
Found at i:20989251 original size:159 final size:159
Alignment explanation
Indices: 20989075--20989589 Score: 460
Period size: 158 Copynumber: 3.3 Consensus size: 159
20989065 GCCCGTTTCA
20989075 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGT
1 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGT
* * *
20989140 AGTGAGACTGACAGCACGTAGAGGGGGATCGGG-TCGATCCCTGGCTTGCGCATTATGCCTTTCC
66 AGTGAGACTGACAGCACGCAGAGGGGGATCGGGCT-GATCCCTGGCTTGCGCATTATGCCTCTAC
* **
20989204 AATCGACTCAGCGCCTGCACGCTTGTTTTG
130 AATCGACTCAGCGCCCGCACGCTCATTTTG
* * * ** * * * * *
20989234 TGGGTTGACTTACGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACCGAATCAAGGGTTGCG
1 TGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTG
* * * * **
20989297 GTAG-CAGGA-TCAACAGCACGGAGGGGGGGATCGGGCCTG-TCCCCAGCTTGCGCATT-TGCCT
64 GTAGTGA-GACT-GACAGCACGCAGAGGGGGATCGGG-CTGATCCCTGGCTTGCGCATTATGCCT
* * *
20989358 CTACGATCGGCTGAGCGCCCGCACGCTCATTTTG
126 CTACAATCGACTCAGCGCCCGCACGCTCATTTTG
* * * **
20989392 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAAGGTTGTGAC
1 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGT
* * * * * **
20989457 AGTGGGACCGGCAGCATGCAGAGGGGGACCGGGCTGAT-CCTCGGCTTGCGCATTACACCTC-AC
66 AGTGAGACTGACAGCACGCAGAGGGGGATCGGGCTGATCCCT-GGCTTGCGCATTATGCCTCTA-
* * * ** *
20989520 CGA-CCAGCTCAGCACCCATACAC-CA-TTTG
129 CAATCGA-CTCAGCGCCCGCACGCTCATTTTG
* *
20989549 TGGGTTAGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
1 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
20989590 ATGCAGGGGG
Statistics
Matches: 280, Mismatches: 61, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
157 51 0.18
158 116 0.41
159 108 0.39
160 4 0.01
161 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGT
AGTGAGACTGACAGCACGCAGAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTACA
ATCGACTCAGCGCCCGCACGCTCATTTTG
Found at i:20989429 original size:158 final size:158
Alignment explanation
Indices: 20988930--20989431 Score: 498
Period size: 159 Copynumber: 3.2 Consensus size: 158
20988920 CCCTGTCTAA
* * * * **
20988930 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGCGGCAGTAGGATCGGGA
1 GCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAG-AGGATCGACA
* ** * *
20988995 GCACGCA-GGGGGGATCGGGCCAT-TCCCCGGCTTGCGCATTCTGCCTCTCCGGCCTGCTGAGCA
65 GCACGCAGGGGGGGATCGGGCC-TGTCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCG
* * **
20989058 CCCGTACGCCCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTTGTGGGTTGGCTTAG
** * * *
20989088 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGTAGTGAGA-CTG
1 GCATAGGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACCGAGGGTTGCGGTAGAG-GATC-G
* * * * * * * *
20989150 ACAGCACGTAGAGGGGGATCGGGTC-GATCCCTGGCTTGCGCATTATGCCTTTCCAATCGACTCA
62 ACAGCACGCAGGGGGGGATCGGGCCTG-TCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGA
* * * *
20989214 GCGCCTGCACGCTTGTTTTGTGGGTTGACTTAC
126 GCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
* * * * *
20989247 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCAAGGGTTGCGGTAGCAGGATCAACA
1 GCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAG-AGGATCGACA
* * *
20989312 GCACGGAGGGGGGGATCGGGCCTGTCCCCAGCTTGCGCATT-TGCCTCTACGATCGGCTGAGCGC
65 GCACGCAGGGGGGGATCGGGCCTGTCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGC
*
20989376 CCGCACGCTCATTTTGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTTGTGGGTTGGCTTAG
20989405 GCATAGGGAGTTCATT-CCATGTCTAAG
1 GCATAGGGAGTTCATTCCCA-GTCTAAG
20989432 CCCCAGTCGG
Statistics
Matches: 273, Mismatches: 58, Indels: 26
0.76 0.16 0.07
Matches are distributed among these distances:
157 8 0.03
158 114 0.42
159 145 0.53
160 6 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGAGGATCGACAG
CACGCAGGGGGGGATCGGGCCTGTCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCC
CGCACGCTCGTTTTGTGGGTTGGCTTAG
Found at i:20989452 original size:158 final size:159
Alignment explanation
Indices: 20988994--20989589 Score: 476
Period size: 159 Copynumber: 3.8 Consensus size: 159
20988984 TAGGATCGGG
* ** *
20988994 AGCACGCA-GGGGGGATCGGGCCAT-TCCCCGGCTTGCGCATTCTGCCTCTCCGGCCTGCTGAGC
1 AGCACGCAGGGGGGGATCGGGCC-TGTCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGC
* * * ** *
20989057 ACCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
65 GCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGA
* * * * *
20989122 CGGACCGAGGGTTGTGGTAGTGAGACTGAC
130 CGGACTGAAGGTTGCGGTAGAGAGACTAAC
* * * * * * * *
20989152 AGCACGTAGAGGGGGATCGGGTC-GATCCCTGGCTTGCGCATTATGCCTTTCCAATCGACTCAGC
1 AGCACGCAGGGGGGGATCGGGCCTG-TCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGC
* * * * * ** *
20989216 GCCTGCACGCTTGTTTTGTGGGTTGACTTACGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGG
65 GCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG
* * *
20989279 ACCGAATCAAGGGTTGCGGTAGCAG-GA-TCAAC
129 ACGGACTGAA-GGTTGCGGTAG-AGAGACT-AAC
* * *
20989311 AGCACGGAGGGGGGGATCGGGCCTGTCCCCAGCTTGCGCATT-TGCCTCTACGATCGGCTGAGCG
1 AGCACGCAGGGGGGGATCGGGCCTGTCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCG
* *
20989375 CCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
66 CCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGAC
* ** * * ***
20989440 GGACTGAAGGTTGTGACAGTGGGACCGGC
131 GGACTGAAGGTTGCGGTAGAGAGACTAAC
* * * * ** * * * *
20989469 AGCATGCAGAGGGGGACCGGG-CTGATCCTCGGCTTGCGCATTACACCTCACCGACCAGCTCAGC
1 AGCACGCAGGGGGGGATCGGGCCTG-TCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGC
* ** * * * *
20989533 ACCCATACAC-C-ATTTGTGGGTTAGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
65 GCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
20989590 ATGCAGGGGG
Statistics
Matches: 340, Mismatches: 84, Indels: 29
0.75 0.19 0.06
Matches are distributed among these distances:
157 50 0.15
158 122 0.36
159 163 0.48
160 5 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
AGCACGCAGGGGGGGATCGGGCCTGTCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCG
CCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGAC
GGACTGAAGGTTGCGGTAGAGAGACTAAC
Found at i:20989511 original size:317 final size:317
Alignment explanation
Indices: 20988930--20989511 Score: 794
Period size: 317 Copynumber: 1.8 Consensus size: 317
20988920 CCCTGTCTAA
* * * * ***
20988930 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGCGGCAGTAGGATCGGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCAACA
* * * *
20988995 GCACGCAGGGGGGATCGGGCCATTCCCCGGCTTGCGCATTCTGCCTCTCCGGCCTGCTGAGCACC
66 GCACGCAGGGGGGATCGGGCCATTCCCCAGCTTGCGCATTCTGCCTCTACGACCGGCTGAGCACC
* *
20989060 CGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
131 CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* ** * * *
20989125 ACCGAGGGTTGTGGTAGTGAGACTGACAGCACGTAGAGGGGGATCGGGTCGATCCCTGGCTTGCG
196 ACCGAAGGTTGTGACAGTGAGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCTGGCTTGCG
20989190 CATTATGCCTTTCCAATCGACTCAGCGCCTGCACGCTTGTTTTGTGGGTTGACTTAC
261 CATTATGCCTTTCCAATCGACTCAGCGCCTGCACGCTTGTTTTGTGGGTTGACTTAC
* * * *
20989247 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCAAGGGTTGCGGTAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCAACA
* * *
20989312 GCACGGAGGGGGGGATCGGGCC-TGTCCCCAGCTTGCGCATT-TGCCTCTACGATCGGCTGAGCG
66 GCACGCA-GGGGGGATCGGGCCAT-TCCCCAGCTTGCGCATTCTGCCTCTACGACCGGCTGAGCA
* ** *
20989375 CCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
129 CCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * *
20989440 GGACTGAAGGTTGTGACAGTGGGACCGGCAGCATGCAGAGGGGGACCGGG-CTGAT-CCTCGGCT
194 GGACCGAAGGTTGTGACAGTGAGACCGACAGCACGCAGAGGGGGACCGGGTC-GATCCCT-GGCT
20989503 TGCGCATTA
257 TGCGCATTA
20989512 CACCTCACCG
Statistics
Matches: 227, Mismatches: 34, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
316 4 0.02
317 193 0.85
318 30 0.13
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCAACA
GCACGCAGGGGGGATCGGGCCATTCCCCAGCTTGCGCATTCTGCCTCTACGACCGGCTGAGCACC
CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
ACCGAAGGTTGTGACAGTGAGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCTGGCTTGCG
CATTATGCCTTTCCAATCGACTCAGCGCCTGCACGCTTGTTTTGTGGGTTGACTTAC
Found at i:20990547 original size:158 final size:155
Alignment explanation
Indices: 20990103--20990572 Score: 439
Period size: 159 Copynumber: 3.0 Consensus size: 155
20990093 GGAGTTCATT
* * *
20990103 CTAAGATC-GAACTGGATCGAGGGTTGCAGCAGCAGGATTTGCAGCAGTA-GGGGGACCGGGCTG
1 CTAAGATCAG-ACCGGACCGAGGGTTGCAGCAGCAGGA-TTGCAGCAGCAGGGGGGACCGGGCTG
* ** * * *
20990166 ATCCCCGACTTACGCATTCTACCTCTCCGGCCGACGGAGCGCCCGTACAC-CTGTTTCATGGGTT
64 ATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGTACGCTC-GTTTCATGGGTT
* * *
20990230 -AGCTTAGGCATAGGGAGTTCATTCAAAGT
128 GA-CTTAGGCATA-CGAGTTCATTCCAAGC
* * * *** * * * *
20990259 CTAAGCCTCAG-TCAGACCGAGGGTTATGGCAGCGGGATTGGTAGCACGCAGAAGGGGACC-GGT
1 CTAAG-ATCAGACCGGACCGAGGGTTGCAGCAGCAGGATT-GCAGCA-GCAG-GGGGGACCGGGC
* * * * * *
20990322 TCGATCCCCGACTTGCGCATTATGCCTCTCCGATAGGCTCAGCGCCCGAACGCTAGTTTCATGGG
62 T-GATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGTACGCTCGTTTCATGGG
*
20990387 TTGACTTAGGCATACGACGTTCATTCCCAGC
126 TTGACTTAGGCATACGA-GTTCATTCCAAGC
* *
20990418 CTAAGATCAGACCGGACCGAGTGTTGCAGCAGCAGGATCGACAGCATGCAGGGGGGACCGGGCTG
1 CTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATTG-CAGCA-GCAGGGGGGACCGGGCTG
* * * *
20990483 GTCCCCGAATTACACATTCTGCCTCTCCGATCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTG
64 ATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTG
* *
20990548 GCTTAGACATACGGAGTTCATTCCA
129 ACTTAGGCATAC-GAGTTCATTCCA
20990573 CGTCTAAGCA
Statistics
Matches: 245, Mismatches: 55, Indels: 26
0.75 0.17 0.08
Matches are distributed among these distances:
155 2 0.01
156 28 0.11
157 4 0.02
158 93 0.38
159 117 0.48
160 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (155 bp):
CTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATTGCAGCAGCAGGGGGGACCGGGCTGAT
CCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGAC
TTAGGCATACGAGTTCATTCCAAGC
Found at i:20990589 original size:26 final size:26
Alignment explanation
Indices: 20990555--20990606 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20990545 TTGGCTTAGA
20990555 CATACGGAGTTCATT-CCACGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
*
20990581 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
20990607 ATCAGTCTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:20990719 original size:184 final size:184
Alignment explanation
Indices: 20990405--20991157 Score: 530
Period size: 184 Copynumber: 4.0 Consensus size: 184
20990395 GGCATACGAC
* *
20990405 GTTCATTCCCAGCCTAAGATCAGACCGGACCGAGTGTTGCAGCAGCAGGATCGACAGCATGCAGG
1 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGTGTTGCAGCAGCAGGATCGACAGCACGCAGG
** * * *
20990470 GGGGACCGGGCTGGTCCCCGAATTACACATTCTGCCTCTCCGATCGGCTGAGCACCCGTACGCTC
66 GGGGACCGGGCCAGTCCCCGAATTACACATTCTACCTCTCCGACCGGCTGAGCACCCGCACGCTC
20990535 GTTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCACGTCTAAGCATATGGA
131 GTTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCACGTCTAAGCATATGGA
* * * * * *
20990589 GTTCATTCCCAGTCTAAGATCAGTCTGGATCGAG-GCTTGCGGCAGTAGGATCGATAGCACGCAG
1 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGTG-TTGCAGCAGCAGGATCGACAGCACGCAG
* * ** * * * *
20990653 GGGGGACTGGGCCAGTCCCTGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGTCCC-CACGC
65 GGGGGACCGGGCCAGTCCCCGAATTACACATTCTACCTCTCCGACCGGCTGAGC-ACCCGCACGC
* * *
20990717 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGA
129 TCGTTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCACGTCTAAGCATATGGA
* * * * * * *
20990773 GTTCATCCCCATTCTAAGATCAAATCGGACCAAGGATTACGGTATCAGGACTAGCAACAGGATTG
1 GTTCATTCCCAGTCTAAGATCAGACCGGACC---GAGT---GT-T---G-C-AGCAGCAGGATCG
* * * * *
20990838 ACAGCACGTAGGGGGGATCGGGCC-GATCCTC-AACTTGCACATTCTGCCTCTCCGGTCGGCCTC
54 ACAGCACGCAGGGGGGACCGGGCCAG-TCCCCGAA-TTACACATTCTACCTCT-C---C-G----
* * * ** * * *
20990901 TCCGACGGCTGAGCGCCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCC
108 -AC--CGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCAC
* **
20990965 AGTATAAGCATACAGA
170 -GTCTAAGCATATGGA
* * * * ** * ** *
20990981 GTTCAATCCCAGTCTAAGATC-GAACTGAACCGAGGGTTGTGGCAGTAGGATCGGTAGCACACAG
1 GTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGTGTTGCAGCAGCAGGATCGACAGCACGCAG
* * * ** * * * * *
20991045 CGGGGATC-GGCCCGATCCCCGGCTTACGCATTCTGCCTCTCTGACCGGCTGAACGCCCGCACGC
65 GGGGGACCGGGCCAG-TCCCCGAATTACACATTCTACCTCTCCGACCGGCTGAGCACCCGCACGC
* * * * *
20991109 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
129 TCGTTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCACGTCTAAGC
20991158 CCCAGCCGAT
Statistics
Matches: 444, Mismatches: 90, Indels: 70
0.74 0.15 0.12
Matches are distributed among these distances:
183 1 0.00
184 233 0.52
185 6 0.01
186 1 0.00
187 2 0.00
190 1 0.00
191 3 0.01
194 1 0.00
195 7 0.02
196 91 0.20
197 1 0.00
198 1 0.00
200 1 0.00
201 2 0.00
202 2 0.00
205 2 0.00
206 1 0.00
207 6 0.01
208 82 0.18
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (184 bp):
GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGTGTTGCAGCAGCAGGATCGACAGCACGCAGG
GGGGACCGGGCCAGTCCCCGAATTACACATTCTACCTCTCCGACCGGCTGAGCACCCGCACGCTC
GTTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCACGTCTAAGCATATGGA
Found at i:20990788 original size:26 final size:26
Alignment explanation
Indices: 20990738--20990790 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20990728 GTTGGCTTAG
*
20990738 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCATGTCTAA
*
20990764 GCATATGGAGTTCATCCCCAT-TCTAA
1 GCATACGGAGTTCAT-CCCATGTCTAA
20990790 G
1 G
20990791 ATCAAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATGTCTAA
Found at i:20990982 original size:26 final size:26
Alignment explanation
Indices: 20990946--20990998 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20990936 GTTGACTTAG
*
20990946 GCATACGGAGTTC-ATCCCCAGTATAA
1 GCATACAGAGTTCAAT-CCCAGTATAA
*
20990972 GCATACAGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTATAA
20990998 G
1 G
20990999 ATCGAACTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTATAA
Found at i:20991324 original size:26 final size:26
Alignment explanation
Indices: 20991288--20991340 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20991278 GTTGGCTTAG
20991288 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20991314 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20991340 G
1 G
20991341 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20992040 original size:26 final size:26
Alignment explanation
Indices: 20992004--20992056 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20991994 GTTGACTTAG
20992004 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
20992030 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
20992056 G
1 G
20992057 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:20992413 original size:159 final size:156
Alignment explanation
Indices: 20992030--20992520 Score: 522
Period size: 159 Copynumber: 3.1 Consensus size: 156
20992020 CCCAGTCTAA
* * * * *
20992030 GCATATGGAGTTCATTCCTAGTCTAAGATCGGA-CTGGACCGAGGGTTGCGGCAGGAGGATCGAC
1 GCATACGGAGTTCATTCCAAGTCTAAGATCAGATC-GGACTGAGGGTTGCGGCAGCAGGATCGAC
* *
20992094 AGCACCTATGGGGGACCGGGCTGATCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
65 AGCACC-ATGGGGGACCGGGCCGATCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCC
* *
20992159 CGTACGCCCGTTTCATGGGTTGGCTTAG
129 CGCACGCTCGTTTCATGGGTTGGCTTAG
* * * ** * * **
20992187 GCATAGGGAGTTTATTCCATGTCTAAGCCCCAG-TCGGA-TCGAAGGTTGTGGCAGTGGGATC-A
1 GCATACGGAGTTCATTCCAAGTCTAAG-ATCAGATCGGACT-GAGGGTTGCGGCAGCAGGATCGA
* * * ** * *
20992249 GCAGCACACATCGAGGGACCGGGCCAATCCTCGGCTTGTGCATTATGCCTCTCCGGTTGGCTCAA
64 -CAGCAC-CAT-GGGGGACCGGGCCGATCC-CGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAG
** *
20992314 CGCCCGCGTGCTCGTTTCATGGGTTGACTTAG
125 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
20992346 GCATACGGAGTTCATTCCAAGTCTAAGATCAGATCAGACTGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
20992411 GCACGCAGGGGGGACTGGGTCGGTCCCCAGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGCGCC
66 GCAC-CATGGGGGACCGGGCCGAT-CCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCC
* *
20992476 TGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCATGGGTTGGCTTAG
20992504 GCATACGGAGTTCATTC
1 GCATACGGAGTTCATTC
20992521 AATGTCCAAG
Statistics
Matches: 267, Mismatches: 56, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 51 0.19
158 103 0.39
159 110 0.41
160 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGACA
GCACCATGGGGGACCGGGCCGATCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:20992913 original size:25 final size:26
Alignment explanation
Indices: 20992884--20992933 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
20992874 GTTGACTTAG
20992884 GCATACGGAGTTCA-TCCCGGTCTAA
1 GCATACGGAGTTCATTCCCGGTCTAA
*
20992909 GCATACGGAGTTCATTCTCGGTCTA
1 GCATACGGAGTTCATTCCCGGTCTA
20992934 TGATCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCGGTCTAA
Found at i:20993115 original size:26 final size:26
Alignment explanation
Indices: 20993079--20993131 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20993069 GTTGGCTTAG
20993079 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20993105 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20993131 G
1 G
20993132 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20999998 original size:159 final size:160
Alignment explanation
Indices: 20999777--21000523 Score: 471
Period size: 159 Copynumber: 4.5 Consensus size: 160
20999767 ACCCGGGCCA
* ** * * *
20999777 ATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGTGCGCCCATTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTG
* * * * * *
20999842 GCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGTAGCGGG
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGGTTGTGGCAGCAGG
**
20999906 A-CTGGCAGCACACAGAGAGGGATCG-GACCG
131 ATC-AACAGCACACAGAGAGGGATCGAG-CCG
* * * * *
20999936 ATCCCTGGCTTGTGCATTATGCCTCTCC-GACTGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTT
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCAG-CCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTT
* * * *
21000000 GACTTAGGCGTACGGAGTTCATTCCCA-ATCTAAG-ATCAGACCAGACTGAGGGTTGTGGCAGCA
65 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACTGAGGGTTGTGGCAGCA
*** * * *
21000063 GGATCAACAGCATGTAGGGGGGGATCGAGTCG
129 GGATCAACAGCACACAGAGAGGGATCGAGCCG
* * *
21000095 ATCCCCGGCTTACGCATTCTGCCTCTCCAGCCAGCTGAGTGCTCGCACGCTCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTG
* * * * *
21000160 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGCCT-ACGATCAG
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGC--AC-CAG---A---CCAGACTGAGGGT-TG
** * * *
21000224 -ACCAGACCAAGGGTTGCAGCAGCAGGCA-AG-GAGGGA-CCAGGCCG
121 TGGCAG--C-A-GGAT-CAACAGCA--CACAGAGAGGGATCGA-GCCG
** * * ** *
21000268 ATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTAAAGCACCCGCACGCTCATTTCGTGGGTT
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCT-GAGTGCCCGCACGCTCGTTTCGTGGGTT
* * *
21000333 GGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGCCCCAG-TCGGA-TCGAGGGTTGTGGCAGTA
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACT-GAGGGTTGTGGC---A
* * * *
21000395 GGACCGGTAGCGGATCGACAGCA-AGCAGAGGGGGATCGGGCTG
126 -G--C---A--GGATCAACAGCACA-CAGAGAGGGATCGAGCCG
* * * * ** *
21000438 ATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTG
* * *
21000503 ACGTAGGCATACGAAGTTCAT
66 GCTTAGGCATACGGAGTTCAT
21000524 CCCTAATCTA
Statistics
Matches: 451, Mismatches: 95, Indels: 73
0.73 0.15 0.12
Matches are distributed among these distances:
158 7 0.02
159 197 0.44
160 6 0.01
162 2 0.00
163 5 0.01
164 4 0.01
166 1 0.00
167 2 0.00
168 10 0.02
169 45 0.10
170 56 0.12
171 6 0.01
172 5 0.01
173 67 0.15
174 38 0.08
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (160 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGGTTGTGGCAGCAGG
ATCAACAGCACACAGAGAGGGATCGAGCCG
Found at i:21000512 original size:343 final size:343
Alignment explanation
Indices: 21000063--21000743 Score: 829
Period size: 343 Copynumber: 2.0 Consensus size: 343
21000053 TGTGGCAGCA
* * * *
21000063 GGATCAACAGCATGTAGGGGGGGATCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTCCAGCCA
1 GGATCAACAGCAAGCAGAGGGGGATCGAGTCGATCCCCGGCTTACGCATTATGCCTCTCCAGCCA
** * * * * *
21000128 GCTGAGTGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAA
66 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACGTAGGCATACGAAGTTCA-TCCATAATCTAA
* *
21000192 GCATACGGAGTTCATTCCCAGCCTACGATC-AGACCAGACCAAGGGTTGC-AGCAGCAGGCAAGG
130 GCATACGGAGTTCATTCCCAGCCTAAGATCGA-ACCAGACCAAGGGTTGCGA-CAGCACGCAAGG
* *
21000255 AGGGACCAGGCCGATCCCCGGCTTGC-GCATTCTGCCTCTCTGGTCGGCT-AAAGCACCCGCACG
193 -GGGACCAGGCCGATCCCCGGCTTGCAG-ATTCTGCCTCTCCGATCGGCTGAAAGC-CCCGCACG
* * * * *
21000318 CTCATTTCGTGGGTTGGCTTAGGCATA-CGAGTTCATTCCATGTCTAAGCCCCAG-TCGGATCGA
255 CCCATTTCGGGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAACCCCCAGCT-GAACCGA
**
21000381 GGGTTGTGGCAGTAGGACCGGTAGC
319 GGGTTGTGGCAACAGGACCGGTAGC
* * * * *
21000406 GGATCGACAGCAAGCAGAGGGGGATCG-GGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGGCC
1 GGATCAACAGCAAGCAGAGGGGGATCGAGTC-GATCCCCGGCTTACGCATTATGCCTCTCCAGCC
* * * *
21000470 GGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGACGTAGGCATACGAAGTTCATCCCTAATCTAA
65 AGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACGTAGGCATACGAAGTTCATCCATAATCTAA
* ** **
21000535 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTGCGACAGCACGCAAGGGG
130 GCATACGGAGTTCATTCCCAGCCTAAGATCGAACCAGACCAAGGGTTGCGACAGCACGCAAGGGG
** * * ** *
21000600 GACTGGGCCGATCCTCGGCTTGCAGATTCTGCCTCTCCGATCGGTTGAGTGCCCTGCACGCCCAT
195 GACCAGGCCGATCCCCGGCTTGCAGATTCTGCCTCTCCGATCGGCTGAAAGCCCCGCACGCCCAT
* *
21000665 TTCGGGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAACCCCCAGCTGAACCGAGGGTTG
260 TTCGGGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAACCCCCAGCTGAACCGAGGGTTG
21000730 TGGCAACAGGACCG
325 TGGCAACAGGACCG
21000744 ACAACACGTA
Statistics
Matches: 285, Mismatches: 45, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
342 78 0.27
343 204 0.72
344 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (343 bp):
GGATCAACAGCAAGCAGAGGGGGATCGAGTCGATCCCCGGCTTACGCATTATGCCTCTCCAGCCA
GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACGTAGGCATACGAAGTTCATCCATAATCTAAG
CATACGGAGTTCATTCCCAGCCTAAGATCGAACCAGACCAAGGGTTGCGACAGCACGCAAGGGGG
ACCAGGCCGATCCCCGGCTTGCAGATTCTGCCTCTCCGATCGGCTGAAAGCCCCGCACGCCCATT
TCGGGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAACCCCCAGCTGAACCGAGGGTTGT
GGCAACAGGACCGGTAGC
Found at i:21001034 original size:26 final size:26
Alignment explanation
Indices: 21000998--21001050 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21000988 GTTGGCTTAG
21000998 GCATACAGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
*
21001024 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
21001050 G
1 G
21001051 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:21001399 original size:843 final size:834
Alignment explanation
Indices: 20999627--21001879 Score: 2041
Period size: 853 Copynumber: 2.7 Consensus size: 834
20999617 TCTTGTCGGT
* * * * * **
20999627 TGAGCACCCGCATGCTCATTTCGTGGGTTGACTTAGGCGTGCGGAGTTCATCCCCAGTCTAAATA
1 TGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAATCTAAGCA
*
20999692 TACAGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGTGACAGTAGGATCGGCAGC
66 TACAGAGTTCATTCCCAGTCTAAGATC-GAACTGGACCGAGGG-T-TG-C-----GA----CAGC
* *
20999756 ATGCAGGGGGGACCCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCC
118 ACGCAAGGGGGACCCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCC
* * * *
20999821 GTGCGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAGCCGGA
183 GTGCGCCCATTTCAGGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCCCCAGCCGAA
* * * * * * * * *
20999886 CTGAGGGTTGTGGTAGCGGGACTGGCAGCACACAGAGAGGGATCGGACCGATCCCTGGCTTGTGC
248 CCGAGGGTTGTGGCAACAGGACCGACAACACACAGAGAGGGACCGGACCGATCCCTGACTTGTGC
** ** * * *
20999951 ATTATGCCTCTCCGACTGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGA
313 ATTATGCCTCTCCGACCAGCTCAGCACCCGCACACTCATTTCGTGGGTTGACTTAGGCGTACAGA
* * * * *
21000016 GTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCAACAGCATGTAGG
378 GATCATTCCCAACCTAAGATCAGACCAGACTGAGGGTTATGGCAGCAGGATCAACAGCACGCAGG
* * * * * *
21000081 GGGGGATCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTCCAGCCAGCTGAGTGCTCGCACGCT
443 GGGGGACCGAGCCAATCCCCGGCTTACGCACTCTGCCTCTCCAACCAGCTGAGCGCTCGCACGCT
* * *
21000146 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
508 CATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
* * *
21000211 AGCCTACGATCAGACCAGACCAAGGGTTGCAGCAGCAGGCAAGGAGGGACCAGGCCGATCCCCGG
573 AGCCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGCAAGGAGGGACCAGGCCGATACCCGA
* * * **
21000276 CTTGCGCATTCTGCCTCTCTGGTCGGCTAAAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGG
638 CTTGCGCATTCTACCTCTCTGGCCGGCTAAAGCACCAGCACGCTCATTTCAAGGGTTGGCTTAGG
* * * * ** *
21000341 CATACGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGTAGGACCGGTAGC
703 CATACGAGTTCATTCAATGTCTAAGCCCCAGCCGAATCGAGGGTTGTGGCAGCAGGACCGACAAC
* * * * *
21000406 GGATCGACAGCAAGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCG
768 GGATCGACAGCAAGCAGAGGGGGACCAGGCTGATCCCCAGCTTACGCATTATGCCTCTTCGACCG
*
21000471 GT
833 GC
* * * *
21000473 TGAGCACCCGTACGCTCGTTTCGTGGGTTGACGTAGGCATACGAAGTTCATCCCTAATCTAAGCA
1 TGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAATCTAAGCA
* *
21000538 TACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTGCGACAGCACGCAAGGGGGA-
66 TACAGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGACAGCACGCAAGGGGGAC
* * * * * *
21000602 CTGGGCCGATCCTCGGCTTGCAG-ATTCTGCCTCTCC-GATCGGTTGAGTGCCC-TGCACGCCCA
131 CCGGGCCAATCCCCGGCTTGC-GCATTCTGCCTCTCCAG-CCGGCTGAGCGCCCGTG--CGCCCA
* * *
21000664 TTTCGGGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAACCCCCAGCTGAACCGAGGGTT
192 TTTCAGGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCCCCAGCCGAACCGAGGGTT
** *
21000729 GTGGCAACAGGACCGACAACACGTAGAGGGGGACCAGG-CCGAT-CCTCGACTTGCT-CATTATG
257 GTGGCAACAGGACCGACAACACACAGAGAGGGACC-GGACCGATCCCT-GACTTG-TGCATTATG
* ** * * *
21000791 CCTTTTTGACCAGCTCAGCACCCGCACATTCATTTCGTGGGTTGACTTAGGCTTACATAGATCAT
319 CCTCTCCGACCAGCTCAGCACCCGCACACTCATTTCGTGGGTTGACTTAGGCGTACAGAGATCAT
* * * * *
21000856 TCCCAGCCTAAGATCAGATC-GAACCT-AGGGTTATGGCAGTAGGATTAATAGCACGCA-GGGGG
384 TCCCAACCTAAGATCAGACCAG-A-CTGAGGGTTATGGCAGCAGGATCAACAGCACGCAGGGGGG
* * * *
21000918 GACCGAGCCAATCCCTGGCTTGCGCACTCTGCCTCTCCAA-CTGACTG-GCGGTCGCACGCTCAT
447 GACCGAGCCAATCCCCGGCTTACGCACTCTGCCTCTCCAACCAG-CTGAGCGCTCGCACGCTCAT
* * *
21000981 TTTATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCTCAGT
511 TTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGC
* * ** * * *
21001046 CTAAGATC-GAATCGGACTGAGGGTTGC-GACAGTAGGATCGACAGCATGTAGGGGGGATCGGGC
576 CTAAGATCAG-ACCAGACCAAGGGTTGCAG-CAGCAGG--C-A-AG---G-A---GGGACCAGGC
* *
21001109 CGATACCCGACTTGCGCATTCTACCTCTCTGGCCGGCT-GAGCACCAGTACGCTCATTTCAAGGG
628 CGATACCCGACTTGCGCATTCTACCTCTCTGGCCGGCTAAAGCACCAGCACGCTCATTTCAAGGG
*
21001173 TTGGTTTAGGCATACGGAGTTCATTCAATGTC-AAGCCCCAGCCGAA-CTGAGGGTTGTGGCAGC
693 TTGGCTTAGGCATAC-GAGTTCATTCAATGTCTAAGCCCCAGCCGAATC-GAGGGTTGTGGCAGC
* * *
21001236 AGGACCGACAACGGGATCGACAGCACGCAGAGGGGGACCATGCTGATCCTCAGCTTACGCATTAT
756 AGGACCGACAAC-GGATCGACAGCAAGCAGAGGGGGACCAGGCTGATCCCCAGCTTACGCATTAT
21001301 GCCTC-TCTGACCGGC
820 GCCTCTTC-GACCGGC
* * * *
21001316 TGAGCGCTCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTATTCTAAGCA
1 TGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAATCTAAGCA
* * *
21001381 TATAGAGTTCATTCCCAGTCTAAGATC-AGACTAGACCGAGGGTTGTGACAGCAGGATCGGCAAC
66 TACAGAGTTCATTCCCAGTCTAAGATCGA-ACTGGACCGAGGGTTGCGACAGC---A-C-G----
* * * * * ** ** * *
21001445 ACACAGGGGGA-TCGAG-CAGGTCTCCGGCTTACGCATTCTGCCTCTCTTGGTGGCTGAGTGCCT
121 -CA-AGGGGGACCCGGGCCA-ATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCC
** * * * * *
21001508 GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTGATTCCATGTCTAAGCCCCAGTC-AG
183 GTGCGCCCATTTCAGGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCCCCAGCCGA-
* * * * * * * *
21001572 ATCGAGGGTTGTGGCAGC-GAGACCGGCAGCACGCAGA-AGGTGACCGGGCCGATCTCTGGCTTG
247 ACCGAGGGTTGTGGCAACAG-GACCGACAACACACAGAGAGG-GACCGGACCGATCCCTGACTTG
* * * * * * * * ** * * *
21001635 CGCATTATGCCTTTTCGATCGGCTCAGTGA-TCGCACGCTTGTTTCATGGGTTGACTTATGCATA
310 TGCATTATGCCTCTCCGACCAGCTCAG-CACCCGCACACTCATTTCGTGGGTTGACTTAGGCGTA
* * ** * * ** * * **
21001699 TAGAGTTCATTCCCAGTCTAAGATC-GCACC-GAACCGAAGGTTGCGGTAGCAAGATCGGCAGCA
374 CAGAGATCATTCCCAACCTAAGATCAG-ACCAG-ACTGAGGGTTATGGCAGCAGGATCAACAGCA
* * * *** * ** ** *
21001762 CGCA-TGGGGGATCGGGTTGATCCTCAACTT--GCACTTTCTGCCTCTCCGGCCAGCTGAGCGCC
437 CGCAGGGGGGGACCGAGCCAATCCCCGGCTTACGCAC--TCTGCCTCTCCAACCAGCTGAGCGCT
* * *
21001824 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-TGAAGTTCATTCCATGTCTAAGC
500 CGCACGCTCATTTCATGGGTTGGCTTAGGCATACAG-AGTTCATTCCATGTCTAAGC
21001880 CCCAGCCGGA
Statistics
Matches: 1143, Mismatches: 206, Indels: 108
0.78 0.14 0.07
Matches are distributed among these distances:
831 2 0.00
832 104 0.09
833 87 0.08
834 215 0.19
835 6 0.01
836 2 0.00
838 2 0.00
839 1 0.00
840 1 0.00
841 1 0.00
842 73 0.06
843 215 0.19
844 2 0.00
845 4 0.00
846 90 0.08
847 1 0.00
848 1 0.00
851 4 0.00
852 8 0.01
853 225 0.20
854 98 0.09
855 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (834 bp):
TGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAATCTAAGCA
TACAGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGACAGCACGCAAGGGGGAC
CCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGTGCGCCCATTTC
AGGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCCCCAGCCGAACCGAGGGTTGTGG
CAACAGGACCGACAACACACAGAGAGGGACCGGACCGATCCCTGACTTGTGCATTATGCCTCTCC
GACCAGCTCAGCACCCGCACACTCATTTCGTGGGTTGACTTAGGCGTACAGAGATCATTCCCAAC
CTAAGATCAGACCAGACTGAGGGTTATGGCAGCAGGATCAACAGCACGCAGGGGGGGACCGAGCC
AATCCCCGGCTTACGCACTCTGCCTCTCCAACCAGCTGAGCGCTCGCACGCTCATTTCATGGGTT
GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCAG
ACCAGACCAAGGGTTGCAGCAGCAGGCAAGGAGGGACCAGGCCGATACCCGACTTGCGCATTCTA
CCTCTCTGGCCGGCTAAAGCACCAGCACGCTCATTTCAAGGGTTGGCTTAGGCATACGAGTTCAT
TCAATGTCTAAGCCCCAGCCGAATCGAGGGTTGTGGCAGCAGGACCGACAACGGATCGACAGCAA
GCAGAGGGGGACCAGGCTGATCCCCAGCTTACGCATTATGCCTCTTCGACCGGC
Found at i:21002313 original size:671 final size:671
Alignment explanation
Indices: 21001024--21003632 Score: 2808
Period size: 671 Copynumber: 3.9 Consensus size: 671
21001014 CCATGTCTAA
* * * * *
21001024 GCATACGGAGTTCATTCTCAGTCTAAGATCGAATCGGACTGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGCACCGGACCGAAGGTTGCGACAGTAGGATCGACA
* * * * *
21001089 GCATGTAGGGGGGATCGGGCCGATACCCGACTTGCGCATTCTACCTCTCTGGCCGGCTGAGCACC
66 GCACGCAGGGGGGATCGGGCCGAT-CCCGACTTGCACATTCTACCTCTCCGGCCAGCTGAGCACC
* * * * *
21001154 AGTACGCTCATTTCAAGGGTTGGTTTAGGCATACGGAGTTCATTCAATGTC-AAGCCCCAGCCGA
130 CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGA
* * * * *
21001218 ACTGAGGGTTGTGGCAGCAGGACCGACAACGGGATCGACAGCACGCAGAGGGGGACC-ATGCTGA
195 ACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCATGCAGAGGGGGACCGAGGCTGA
* * * *
21001282 TCCTCAGCTTACGCATTATGCCTCTCTGACCGGCTGAGCGCTCGCACGCTCATTTCATGGGTTGA
260 TCCCCGGCTTACGCATTATGCCTCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGA
* *
21001347 CTTAGGCATACGGAGTTCATCCCTATTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGAC
325 CTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * *
21001412 TAGACCGAGGGTTGTGACAGCAGGATCGGCAACACAC-AGGGGGATCGAG-CAGGTCTCCGGCTT
390 TAGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAAGGGGGATCGGGTC-GATCCCCGGCTT
** ** *
21001475 ACGCATTCTGCCTCTCTTGGTGGCTGAGTGCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
454 ACGCATTCTGCCTCTCCAGCCGGCTGAGTGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
* * * * *
21001540 GGGAGTTGATTCCATGTCTAAGCCCCAGTCAGATCGAGGGTTGTGGCAGCGAGACCGGCAGCACG
519 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGTAGCGGGACC-GCAGCACG
* *
21001605 CAGAAGGTGACCGGGCCGAT-CTCTGGCTTGCGCATTATGCCTTTTCGATCGGCTCAGTGATCGC
583 CAG-AGGGGACCGGGCCGATCCTCTGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGTGATCGC
*
21001669 ACGCTTGTTTCATGGGTTGACTTAT
647 ACGCTTGTTTCGTGGGTTGACTTAT
** * ** * * *
21001694 GCATATAGAGTTCATTCCCAGTCTAAGATCGCACCGAACCGAAGGTTGCGGTAGCAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGCACCGGACCGAAGGTTGCGACAGTAGGATCGACA
* ** * * * *
21001759 GCACGCATGGGGGATCGGGTTGATCCTCAACTTGCACTTTCTGCCTCTCCGGCCAGCTGAGCGCC
66 GCACGCAGGGGGGATCGGGCCGATCC-CGACTTGCACATTCTACCTCTCCGGCCAGCTGAGCACC
* * * * *
21001824 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGAAGTTCATTCCATGTCTAAGCCCCAGCCGG
130 CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGA
* *
21001889 ACCAAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCATGTAGAGGGGGACCGA-GCTGA
195 ACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCATGCAGAGGGGGACCGAGGCTGA
* * * *
21001953 TCCCCGGCTTACGTATTATGCCTTTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGA
260 TCCCCGGCTTACGCATTATGCCTCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGA
* * * *
21002018 CTTCGGCATACAGAGTTCATCCCTAGTCTAAGCATAC-GAAGTTCATTCTCAGTCTAAGATCGGA
325 CTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCAGA
* * * * *
21002082 CTGGATCGAGGGTTACGGCAGCAAGATCGGCAGCACGCAAGGGGGATCGGGTCGATCCCCAGCTT
389 CTAGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAAGGGGGATCGGGTCGATCCCCGGCTT
* * *
21002147 ACGCATTCTGCCTCTCCAACCGACTGAGTGCCTGCACGCCCGTTTCGTGGGTTAGCTTAGGCATC
454 ACGCATTCTGCCTCTCCAGCCGGCTGAGTGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCAT-
*
21002212 A-GGAGTTCATTCCATGTCTAAGCCCCAGCCGGATTGAGGGTTGTGGTAGCGGGACCAGCAGCAC
518 AGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGTAGCGGGACC-GCAGCAC
* * * * **
21002276 ACAGAGGGGATCGGGCCGATCCTC-AGCTTGTGCATTATGCCTCTTCGATCGGCTCAGTGCCCGC
582 GCAGAGGGGACCGGGCCGATCCTCTGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGTGATCGC
21002340 ACGCTTGTTTCGTGGGTTGACTTAT
647 ACGCTTGTTTCGTGGGTTGACTTAT
**
21002365 GCATACGGAGTTCATTCCCAGTCTAAGATC-CGACCGGACCGATTGTTGCGACAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGC-ACCGGACCGAAGGTTGCGACAGTAGGATCGAC
* * * * * * *
21002429 AGCACGCAGGGGGGATTGGTCCGATCCCTGACTTGCGCATTTTGCCTTTCCGGCCAGCTGAGCGC
65 AGCACGCAGGGGGGATCGGGCCGATCCC-GACTTGCACATTCTACCTCTCCGGCCAGCTGAGCAC
* * * * *
21002494 TCGCGCGCTTGA-TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACC
129 CCGCACGC-TCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
* *
21002558 GAACCGAGGGTTGTGGCAGCAGGATCGGCAGCGGGATCGACAGCATGCAGAGGGGGA-CTAGGCT
193 GAACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCATGCAGAGGGGGACCGAGGCT
* * * * * * *
21002622 GATCCCTGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCTTGTACGCTCGTTTCGTGGGTT
258 GATCCCCGGCTTACGCATTATGCCTCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCATGGGTT
* *
21002687 GACTTAGGCATACGGAGTTCATCCCTAGTTTAAGCATACAGAGTTCATTCCCAATCTAAGATCAG
323 GACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG
* * * * ** *
21002752 ACCAGATCGAGGGTTGCGTCAGTAGGATCGGTAGCACGCAAGGGATACCGGGTCGATCCCCGGCT
388 ACTAGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAAGGGGGATCGGGTCGATCCCCGGCT
* * * * ** * * * *
21002817 TACGCATTTTGCCCCTCCAGTCGGCTAAGCACCCGCACACCCGTTTCGTGCGTTGGCTTAGGGAT
453 TACGCATTCTGCCTCTCCAGCCGGCTGAGTGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCAT
* * * *
21002882 AGGGAGTTCATTCCATGTCTAAGCGCCAGCTGGATCGAGGGTTGTGGTAGCGGGACCGATAGTAC
518 AGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGTAGCGGGACCG-CAGCAC
* **
21002947 GCAGAGGGGGACCGGGCCGATCC-CTGGCTTGCGCATTATGCCTCTTCGACCGGCTCA-ACATCC
582 GCAGA-GGGGACCGGGCCGATCCTCTGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGTGAT-C
* * *
21003010 GAACACTCGTTTCGTGGGTTGACTTAT
645 GCACGCTTGTTTCGTGGGTTGACTTAT
* * ** * *
21003037 GCATACGGAGTTCATTGCCAGTCTAAGATCAG-ATCC-GATC-AAGGGTTATGGCAGTAGGATCT
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GCA-CCGGACCGAA-GGTTGCGACAGTAGGATCG
* * * * * * *
21003099 ATAGCACGCAAGAGGGATCGAGCTGATCCCCGACATGCACATTCTACCTCT-CGAGCC-GACTTA
63 ACAGCACGCAGGGGGGATCGGGCCGAT-CCCGACTTGCACATTCTACCTCTCCG-GCCAG-CTGA
*
21003162 -CTACCCGCACGCTCATTTCATGGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAG-CCC
125 GC-ACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
** * * * * *
21003225 AGGTTGGACCGAGGGTTGTGGTAGCAGGACCGGTAGCGGGATTGACAGCATGCAGAGGGGGATCG
189 A-GCCGAACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCATGCAGAGGGGGACCG
* * *
21003290 -GGCTGATCCCTGGCTT--GACATTATGCCTCTCT----GACTGA-C-CT--CTC-CT-G--TC-
253 AGGCTGATCCCCGGCTTACG-CATTATGCCTCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCA
* *
21003339 --GGTTGAGC--A--CCTAC--ACG--C-T--C-AGTCTAAGCATACGGAGTTCATTCCCAGTCT
317 TGGGTTGA-CTTAGGCATACGGA-GTTCATCCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCT
* * * * *
21003390 AAGATCAGAC-CGAATCGAAGGTTGC-AGCAGCAGGATCAGCAGCACGC-AGGGGGACCAGGTCG
380 AAGATCAGACTAG-ATCGAGGGTTGCGA-CAGCAGGATCGGCAGCACGCAAGGGGGATCGGGTCG
* * * * * ** ** * *
21003452 ATCTCCGACTTACGCATTCTTCCTCTCCGGCCGACTGAGCACCCACACGCTCGTTTCATGGGTTG
443 ATCCCCGGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGTGCCTGCACGCCCGTTTCGTGGGTTG
* * * * *
21003517 GCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCTAGCCGTACCGAGGGTTGTGGCAGCGGGA
508 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGTAGCGGGA
* * * ** *
21003582 CCGACATCACGTAGAGGGGGATCGGATCGATCCTC-GGCTTACGCATTATGC
573 CCG-CAGCACGCAGA-GGGGACCGGGCCGATCCTCTGGCTTGCGCATTATGC
21003633 TCATTTCATG
Statistics
Matches: 1639, Mismatches: 265, Indels: 95
0.82 0.13 0.05
Matches are distributed among these distances:
645 162 0.10
646 67 0.04
647 1 0.00
649 1 0.00
650 1 0.00
651 1 0.00
652 1 0.00
653 4 0.00
655 1 0.00
656 6 0.00
657 1 0.00
659 2 0.00
661 1 0.00
662 2 0.00
663 1 0.00
665 2 0.00
666 1 0.00
667 5 0.00
669 2 0.00
670 152 0.09
671 802 0.49
672 415 0.25
673 8 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (671 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGCACCGGACCGAAGGTTGCGACAGTAGGATCGACA
GCACGCAGGGGGGATCGGGCCGATCCCGACTTGCACATTCTACCTCTCCGGCCAGCTGAGCACCC
GCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAA
CCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCATGCAGAGGGGGACCGAGGCTGAT
CCCCGGCTTACGCATTATGCCTCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGAC
TTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACT
AGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAAGGGGGATCGGGTCGATCCCCGGCTTAC
GCATTCTGCCTCTCCAGCCGGCTGAGTGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGTAGCGGGACCGCAGCACGCAG
AGGGGACCGGGCCGATCCTCTGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGTGATCGCACGC
TTGTTTCGTGGGTTGACTTAT
Found at i:21002402 original size:158 final size:158
Alignment explanation
Indices: 21002049--21002402 Score: 367
Period size: 158 Copynumber: 2.2 Consensus size: 158
21002039 CCTAGTCTAA
* * * * * *
21002049 GCATACGAAGTTCATTCTCAGTCTAAGATCGGACTGGATCGAGGGTTACGGCAGCAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGGATCGAGGGTTACGGCAGCAAGACCAGCA
* * * *
21002114 GCACGCAAGGGGGATCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCAACCGACTGAGTGCC
66 GCACACAAGGGGGATCGGGCCGATCCCCAGCTTACGCATTATGCCTCTCCAACCGACTCAGTGCC
*
21002179 TGCACGCCCGTTTCGTGGGTTAGCTTAG
131 CGCACGCCCGTTTCGTGGGTTAGCTTAG
* * * ** * **
21002207 GCAT-CAGGAGTTCATT-CCATGTCTAAG-CCCCAGCCGGATTGAGGGTTGTGGTAGCGGGACCA
1 GCATAC-GGAGTTCATTCCCA-GTCTAAGATCCGA-CCGGATCGAGGGTTACGGCAGCAAGACCA
* ** * * * *
21002269 GCAGCACAC-AGAGGGGATCGGGCCGATCCTCAGCTTGTGCATTATGCCTCTTCGATCGGCTCAG
63 GCAGCACACAAG-GGGGATCGGGCCGATCCCCAGCTTACGCATTATGCCTCTCCAACCGACTCAG
** *
21002333 TGCCCGCACGCTTGTTTCGTGGGTT-GACTTAT
127 TGCCCGCACGCCCGTTTCGTGGGTTAG-CTTAG
21002365 GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGGA
21002403 CCGATTGTTG
Statistics
Matches: 157, Mismatches: 31, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
157 8 0.05
158 142 0.90
159 7 0.04
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGGATCGAGGGTTACGGCAGCAAGACCAGCA
GCACACAAGGGGGATCGGGCCGATCCCCAGCTTACGCATTATGCCTCTCCAACCGACTCAGTGCC
CGCACGCCCGTTTCGTGGGTTAGCTTAG
Found at i:21002564 original size:158 final size:164
Alignment explanation
Indices: 21002337--21002708 Score: 429
Period size: 171 Copynumber: 2.3 Consensus size: 164
21002327 GCTCAGTGCC
* * * *
21002337 CGCACGCTTGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGG
1 CGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCCAACCGA
* *
21002402 ACCGA-TTGTTGC-GACA-G-T-A-GGATCGACAGCACGCAG-GGGGGA-TTGGTCCGATCCCTG
66 ACCGAGTTGTGGCAG-CAGGATCAGGGATCGACAGCACGCAGAGGGGGACTAGG-CCGATCCCTG
* *
21002459 ACTTGCGCATTTTGCCTTTCCGGCCAGCTGAGCGCT
129 ACTTGCGCATTATGCCTCTCCGGCCAGCTGAGCGCT
* * * *
21002495 CGCGCGCTTGATTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCG
1 CGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGACCCAACCG
* *
21002559 AACCGAGGGTTGTGGCAGCAGGATCGGCAGCGGGATCGACAGCATGCAGAGGGGGACTAGGCTGA
65 AACCGA--GTTGTGGCAGCAGGAT---CA--GGGATCGACAGCACGCAGAGGGGGACTAGGCCGA
*
21002624 TCCCTGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCT
123 TCCCTGACTTGCGCATTATGCCTCTCCGGCCAGCTGAGCGCT
* * *
21002666 TGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
1 CGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
21002709 CCCTAGTTTA
Statistics
Matches: 177, Mismatches: 21, Indels: 19
0.82 0.10 0.09
Matches are distributed among these distances:
157 3 0.02
158 58 0.33
161 8 0.05
162 2 0.01
163 1 0.01
167 1 0.01
170 16 0.09
171 85 0.48
172 3 0.02
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (164 bp):
CGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCCAACCGA
ACCGAGTTGTGGCAGCAGGATCAGGGATCGACAGCACGCAGAGGGGGACTAGGCCGATCCCTGAC
TTGCGCATTATGCCTCTCCGGCCAGCTGAGCGCT
Found at i:21002746 original size:26 final size:26
Alignment explanation
Indices: 21002694--21002746 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21002684 GTTGACTTAG
* * *
21002694 GCATACGGAGTTCATCCCTAGTTTAA
1 GCATACAGAGTTCATCCCTAATCTAA
21002720 GCATACAGAGTTCATTCCC-AATCTAA
1 GCATACAGAGTTCA-TCCCTAATCTAA
21002746 G
1 G
21002747 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:21003841 original size:26 final size:26
Alignment explanation
Indices: 21003812--21003862 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21003802 TTGGCTTAGG
*
21003812 CATACGGAGTTCATT-CCATGTCTAAA
1 CATACAGAGTTCATTCCCA-GTCTAAA
21003838 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
21003863 TATTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAA
Found at i:21004564 original size:26 final size:26
Alignment explanation
Indices: 21004534--21004586 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21004524 GTTGACTTGG
21004534 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
21004560 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21004586 G
1 G
21004587 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21005078 original size:157 final size:155
Alignment explanation
Indices: 21004560--21005386 Score: 409
Period size: 157 Copynumber: 5.2 Consensus size: 155
21004550 CCCAGTCTAA
* * ** *
21004560 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTG-CAGTAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATC-GA-CGAACCGAGGGTTGACA-CCGTAAGATCGA
* * * * * * * * **** *
21004623 TAGCACGCAAGAGGGACCGAGTCGATCCCCGGCTTACGTATTCTACCTCTCCAACCGACTGAGCG
62 CAGCACGCAGGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTAGGCTGAGCG
* * * * *
21004688 CCCGCATGCCCATTTCATTGGTTGGCTTAG
126 CCCACACGCTCATTTCGTGGGTTGGCTTAG
* ** * * * ***** ** *
21004718 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGTAGTGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGA-CGA-ACCGAGGGTTGACACCGTAAGATCGACA
* ** * ** * * *** *
21004783 GTACGCAGAAAGGGACCAGG-CG-TCCCCAACTTACGCATTATGCCTCTCCGACCGGCTCGA-TG
64 GCACGCAG-GGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTAGGCT-GAGCG
* * * *
21004845 CCCGCACGCTCATTTTGTAGGTTGACTTAG
126 CCCACACGCTCATTTCGTGGGTTGGCTTAG
* * *
21004875 GCATGCGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGTGGGTTG-CACCGTAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATC-GACGA-ACCGAGGGTTGACACCGTAAGATCGAC
*
21004938 AGCACGCAGGGGGGATCGGGCC-AGTCCCCGGCTTGCGCATTCTGCCTCTCTGGTAGGCTGAGCG
63 AGCACGCAGGGGGGA-CGGGCCGA-TCCCCGGCTTGCGCATTCTGCCTCTCCGGTAGGCTGAGCG
21005002 CCCACACGCTCATTTCGTGGGTTGGCTTAG
126 CCCACACGCTCATTTCGTGGGTTGGCTTAG
21005032 GCATACGGAGTTCATTCCCA-GTCTAAGATACGATCGAACCGAGGGTTACGACAGTAGGACCAGT
1 GCATACGGAGTTCATT-CCATGTCTAAGAT-CGA-CGAACCGAGGGTT--GAC------ACC-GT
* * ** * *
21005096 AGCAGGATCGATAGCACGAAGAGGGGGACTGGATCGATCCCCGGCTTACGTACTT-TGCCTCTCC
54 A--A-GATCGACAGCACGCAG-GGGGGAC-GGGCCGATCCCCGGCTTGCGCA-TTCTGCCTCTCC
* * * * * * * *
21005160 GGTCGACTGAGCGCTCGCACACTCGTTTTGTGAGTTGGCTTAG
113 GGTAGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAG
* ** * * *** * * * *
21005203 GCATACGGAGTTCATTCCATCTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATTGACA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATC-GACGAACCGAGGGTTGACACCGTAAGATCGACA
** * * * *
21005268 GCACGCA-GGGGGACCTCGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGTTGGCTGAACGCC
64 GCACGCAGGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTAGGCTGAGCGCC
* * *
21005332 TACACGCCCGTTTCGTGGGTTGGCTTAG
128 CACACGCTCATTTCGTGGGTTGGCTTAG
21005360 GCATA-GAGAGTTCATTCCATGTCTAAG
1 GCATACG-GAGTTCATTCCATGTCTAAG
21005387 CCCAAGCCAG
Statistics
Matches: 517, Mismatches: 116, Indels: 73
0.73 0.16 0.10
Matches are distributed among these distances:
155 7 0.01
156 22 0.04
157 272 0.53
158 61 0.12
159 21 0.04
160 1 0.00
162 2 0.00
163 1 0.00
166 3 0.01
167 3 0.01
169 2 0.00
170 18 0.03
171 100 0.19
172 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGACGAACCGAGGGTTGACACCGTAAGATCGACAGC
ACGCAGGGGGGACGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTAGGCTGAGCGCCCAC
ACGCTCATTTCGTGGGTTGGCTTAG
Found at i:21005733 original size:26 final size:26
Alignment explanation
Indices: 21005696--21005748 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21005686 GTTGGCTGAG
**
21005696 GCATACCGAGTTCATTCCGTGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
21005722 GCATA-CGAAGTTCATTCCCAGTCTAA
1 GCATACCG-AGTTCATTCCCAGTCTAA
21005748 G
1 G
21005749 ACCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:21006115 original size:26 final size:26
Alignment explanation
Indices: 21006063--21006115 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21006053 GTTGACTTAG
* *
21006063 GCATACGGAGTTCATCCCTAGTGTAA
1 GCATACGGAGTTAATCCCTAGTCTAA
21006089 GCATACGGAGTTAATTCCC-AGTCTAA
1 GCATACGGAGTTAA-TCCCTAGTCTAA
21006115 G
1 G
21006116 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCTAGTCTAA
Found at i:21006735 original size:26 final size:26
Alignment explanation
Indices: 21006699--21006750 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21006689 TTGGCTTAGA
21006699 CATACGGAGTTCA-TTCCATGTCTAAG
1 CATACGGAGTTCATTTCCA-GTCTAAG
*
21006725 CATATGGAGTTCATTTCCAGTCTAAG
1 CATACGGAGTTCATTTCCAGTCTAAG
21006751 ACCGGATCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTTCCAGTCTAAG
Found at i:21007103 original size:26 final size:26
Alignment explanation
Indices: 21007073--21007125 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21007063 TTTGACTTAG
21007073 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
21007099 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21007125 G
1 G
21007126 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21007624 original size:26 final size:26
Alignment explanation
Indices: 21007574--21007626 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21007564 GTTGGCTTAG
* *
21007574 GCATACGGATTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
21007600 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
21007626 G
1 G
21007627 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:21008317 original size:26 final size:26
Alignment explanation
Indices: 21008287--21008339 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21008277 GTTGACTTAC
*
21008287 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
21008313 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21008339 G
1 G
21008340 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21008824 original size:170 final size:170
Alignment explanation
Indices: 21008368--21009028 Score: 501
Period size: 171 Copynumber: 3.8 Consensus size: 170
21008358 TTGCGGTAGT
* * * *
21008368 AGGATCGGCAGCACGCAGCGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCG
1 AGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCG
* *
21008433 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
66 GTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAG
* * * * * *
21008498 -ATCAGACCAGACCGAGGGTTGTAGTAGCAGGTCCAGTAGC
130 CACCAGACCAGACCAAGGGTTGTAGCAGAAGATCCAGCAGC
* * * * * ** * ** *
21008538 AGGATAGCCAGCACGCAGGGGGGGACTGGG-TCGATCCTCAGCTTTTGCGTTCTGCCTCTTTG-G
1 AGGATCGACAGCACGCA-GGGGGGACCGGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCCGAT
* * * *
21008601 CTGGTTGAGCACCTGTACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCT
64 C-GGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCT
* * * * *
21008666 AAGCCCCAG-CCGGACTAAGGGTTGTGGCAGTAAGATCGA-CAGC
127 AAGCACCAGACCAGACCAAGGGTTGTAGCAG-AAGATCCAGCAGC
* *
21008709 -GAGATCGACAGCACACAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCC-CTCCGAT
1 AG-GATCGACAGCACGCAG-GGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGAT
* * * *
21008772 CGGTTGAGCACCCGCAGGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
64 CGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCAGTCTA
* * ** * * * * * *
21008837 AGCATACAGAGTTCATTCCCAA-GCTAAGATCAGACCGGATCGAGGGTTGCGGCAGC
128 AGCA-CCAGA--CCA-GACCAAGGGT-TG-T-AG--C--A--GA-AGATCCAGCAGC
* * * * *
21008893 AGGATCGACAGCACGCAAGGGGGACCGGGTTGATTCCCGGCTTGCGTATTCTGCCTCTCCGATTG
1 AGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCG
* * * * * * *
21008958 GCTGAGCACACGTACGCCCATTTCGTGGGTTGGCTTAGGCACAGGGAGTTCATTCCATGTCTAAG
66 GTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAG
*
21009023 CCCCAG
130 CACCAG
21009029 CTGGACTGAG
Statistics
Matches: 374, Mismatches: 87, Indels: 47
0.74 0.17 0.09
Matches are distributed among these distances:
170 79 0.21
171 154 0.41
172 9 0.02
174 3 0.01
175 4 0.01
176 1 0.00
177 1 0.00
179 1 0.00
181 1 0.00
182 1 0.00
183 42 0.11
184 77 0.21
185 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (170 bp):
AGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCG
GTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGC
ACCAGACCAGACCAAGGGTTGTAGCAGAAGATCCAGCAGC
Found at i:21008863 original size:26 final size:26
Alignment explanation
Indices: 21008812--21008864 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21008802 GTTGACTTAG
* *
21008812 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCAAGTCTAA
21008838 GCATACAGAGTTCATTCCCAAG-CTAA
1 GCATACAGAGTTCA-TCCCAAGTCTAA
21008864 G
1 G
21008865 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCAAGTCTAA
Found at i:21009200 original size:159 final size:158
Alignment explanation
Indices: 21008838--21009221 Score: 407
Period size: 159 Copynumber: 2.4 Consensus size: 158
21008828 CCCAGTCTAA
* *
21008838 GCATACAGAGTTCATTCCCAAG-CTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGAC
1 GCATACAGAGTTCATTCCC-AGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
21008902 AGCACGCAAGGGGGACCGGGTTGATTCCCGGCTTGCGTATTCTGCCTCTCCGATTGGCTGAGCAC
65 AGCACGCAAGGGGGACCGGATTGATTCCCGGCTTACGCATTATGCCTCTCCGACTGGCTAAGCAC
* * *
21008967 ACGTACGCCCATTTCGTGGGTTGGCTTAG
130 ACGCACGCCAATTTCGTGGGTTGACTTAG
* ** ** * * * * * *
21008996 GCACAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CTGGACTGAGGGTTGTGGCTGCGGGATTGG
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * *
21009059 CAGCACGCAGTGGGGGACCGGATTGA-TCCCTGGCTTATGCATTATGCCTCTTCGGCTGGCTAAG
64 CAGCACGCA-AGGGGGACCGGATTGATTCCC-GGCTTACGCATTATGCCTCTCCGACTGGCTAAG
* * * *
21009123 CACCCGCACGCTAATTTTGTGGGTTGACTTAT
127 CACACGCACGCCAATTTCGTGGGTTGACTTAG
* *
21009155 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCAACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
21009220 GC
66 GC
21009222 CTCTCCAGCC
Statistics
Matches: 176, Mismatches: 43, Indels: 13
0.76 0.19 0.06
Matches are distributed among these distances:
156 1 0.01
157 3 0.02
158 56 0.32
159 113 0.64
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAAGGGGGACCGGATTGATTCCCGGCTTACGCATTATGCCTCTCCGACTGGCTAAGCACA
CGCACGCCAATTTCGTGGGTTGACTTAG
Found at i:21009308 original size:26 final size:26
Alignment explanation
Indices: 21009271--21009323 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21009261 GTTGGCTTAG
21009271 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
21009297 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21009323 G
1 G
21009324 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21010002 original size:26 final size:26
Alignment explanation
Indices: 21009966--21010018 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21009956 GTTGACTTAG
*
21009966 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
21009992 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21010018 G
1 G
21010019 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21016914 original size:158 final size:158
Alignment explanation
Indices: 21016550--21017054 Score: 448
Period size: 158 Copynumber: 3.2 Consensus size: 158
21016540 TCATCCCAGT
* * * * *
21016550 CTAA-GCATGCGGAGTTCATTCCCAGTCTCAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGAT
1 CTAAGGCATACGGAGTTCATTCCCATTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGAT
* ** * *
21016614 CGACAGCACGCAGGGGGGATCACGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGACTGA
66 CGACAGCACGTAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGACTCA
*
21016679 GCACCCGCACGCCCGTTTCATGGGTTAG
131 GCACCCGCACGCACGTTTCATGGGTTAG
* * * * * ** * *
21016707 CTTAGGCATAGGGAGCTCATT-TCGTGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGTAGC-GG
1 CTAAGGCATACGGAGTTCATTCCCAT-TCTAAG-ATCAGACCAGACCGAGGGTTGCGGTAGCAGG
* * * *
21016769 ACCGACAGCACGTAGAGGGGGATCGGGCCGATCCTCGACTTGCGCATTATGCCTCTTCGGCCGGC
64 ATCGACAGCACGTAG-GGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGAC
* * * ** *
21016834 TCAGCGCTCGTACTTACGTTTCGTGGGTT-G
128 TCAGCACCCGCACGCACGTTTCATGGGTTAG
* * * * * *
21016864 ACTAATGCGTACGGAGTTCATTCCCATTTTAAGATCAGACCGGACCGAGGGTTACAGTAGCAGGA
1 -CTAAGGCATACGGAGTTCATTCCCATTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGA
* * * * * *
21016929 TCGACAGCACATAGGGGGGATCGGGCCGAT-CTCTGGCTTACACATTCTGCCTCTTCGACTGGCT
65 TCGACAGCACGTAGGGGGGATCGGGCCGATCCTC-GGCTTGCGCATTCTGCCTCTTCGGCCGACT
* ** * * * * *
21016993 GAGTGCCCGCACGCTCATTTCGTTGGTTGG
129 CAGCACCCGCACGCACGTTTCATGGGTTAG
*
21017023 CTTAGGCATACGGAGTTCATT-CCATGTCTAAG
1 CTAAGGCATACGGAGTTCATTCCCAT-TCTAAG
21017055 CATACGGAGT
Statistics
Matches: 271, Mismatches: 66, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 30 0.11
158 221 0.82
159 20 0.07
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
CTAAGGCATACGGAGTTCATTCCCATTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGAT
CGACAGCACGTAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGACTCA
GCACCCGCACGCACGTTTCATGGGTTAG
Found at i:21017064 original size:26 final size:26
Alignment explanation
Indices: 21017028--21017080 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21017018 GTTGGCTTAG
21017028 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21017054 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21017080 G
1 G
21017081 ATTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21017778 original size:26 final size:26
Alignment explanation
Indices: 21017749--21017801 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21017739 GTTGACTTAG
*
21017749 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGCAGTTCATCCCCAGTCTAA
* * *
21017775 GCATATGCAGTTCATTCCTAGTCTAA
1 GCATACGCAGTTCATCCCCAGTCTAA
21017801 G
1 G
21017802 ATTGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGCAGTTCATCCCCAGTCTAA
Found at i:21018081 original size:158 final size:158
Alignment explanation
Indices: 21017915--21018277 Score: 432
Period size: 158 Copynumber: 2.3 Consensus size: 158
21017905 CACATGCCCG
* * * *
21017915 TTTCGTGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT-CGGACCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCA-TACAGACCGAGGGT
** **
21017979 TGTGGCAGTGGGACTAG-CAGCACGCAGAA-GGGGACCGGG-CGATCCTCGGCTTGTGCATTATG
65 TGTGGCAGCAGGA-TAGACAGCA--CAGAAGGGGGACCGGGTCGATCCTCGGCTTGCACATTATG
* *
21018041 GCTCTCTGGCCGGCTTAGCGCCTGCACGCTCA
127 GCTCTCTGGCCGGCTGAGCGCCCGCACGCTCA
* * * *
21018073 TTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCATACCAGATCGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCATA-CAGACCGAGGG
* * * * *
21018136 TTGTGGCAGCAGGATCGACAGCACATAAGGGGGATCGGGTCGATCCTCGGCTTGCACATTTTGTC
64 TTGTGGCAGCAGGATAGACAGCACAGAAGGGGGACCGGGTCGATCCTCGGCTTGCACATTATGGC
* *
21018201 TCTCTGGTCGGCTGAGCGCCCGCACGTTCA
129 TCTCTGGCCGGCTGAGCGCCCGCACGCTCA
*
21018231 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
21018278 TATAGAGTTC
Statistics
Matches: 173, Mismatches: 24, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
156 5 0.03
157 16 0.09
158 148 0.86
159 4 0.02
ACGTcount: A:0.19, C:0.24, G:0.31, T:0.26
Consensus pattern (158 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCATACAGACCGAGGGTT
GTGGCAGCAGGATAGACAGCACAGAAGGGGGACCGGGTCGATCCTCGGCTTGCACATTATGGCTC
TCTGGCCGGCTGAGCGCCCGCACGCTCA
Found at i:21018299 original size:26 final size:26
Alignment explanation
Indices: 21018249--21018301 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21018239 GTTGGCTTAG
*
21018249 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
21018275 GCATATAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
21018301 G
1 G
21018302 ATCTGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:21018652 original size:26 final size:26
Alignment explanation
Indices: 21018616--21018668 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21018606 GTTGACTTAG
21018616 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
21018642 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21018668 G
1 G
21018669 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21018680 original size:367 final size:342
Alignment explanation
Indices: 21018064--21018985 Score: 895
Period size: 367 Copynumber: 2.6 Consensus size: 342
21018054 CTTAGCGCCT
* * **
21018064 GCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCATACC-
1 GCACGCCCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCA-ACCG
* * * * ** * * * * * *
21018126 AGATCGAGGGTTGTGGCAGCAGGATCGACAGCACATA-AGGGGGATCGGGTCGATCCTCGGCTTG
64 A-ACCGAGAGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGAACCAGGCCGATCCCCGACTTG
* * * * * * *
21018190 CACATTTTGTCTCTCTGGTCGGCTGAGCGCCCGCACGTTCATTTCGTGGGTTGGCTTAGGCATAC
128 CGCATTATGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
* * **
21018255 AGAGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAATCTAAGATCTGACCAGACCGACGG
193 AGAGTTCATCCCA-GTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAAACCAGACCGACGG
* * * * * **
21018320 TTGCGGTAGCAGGACCAGCAACAGGATTGACAGCACGCAACGGGAATCGGGGCGATCCTTGACTT
257 TTACAGCAGCAGGACCAGCAACA-CA-T---AG-A-G----GGG-ACCGGGGCGATCCCCGACTT
* * *
21018385 GCGTAATCTGCCTCT-CTGATCGGATGAGCACCC
310 GCGCAATCTGCCTCTCCAG-CCGGATGAGCACCC
* *
21018418 GCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC-AG
1 GCACGCCCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGA-
* * * *
21018482 ACCGAGGGTTGTGGCAGCAGGACAGGCAGCAAGATCGGCAGCATGCAGAGGGGGACCAGGCTGAT
65 ACCGAGAGTTGT-G--GCA-G-CAGG-A-C-----CGGCAGCACGCAGAGGGGAACCAGGCCGAT
* *
21018547 CCCC-AGTTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGA
118 CCCCGA-CTTGCGCATTATGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGA
*
21018611 CTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAAC
182 CTTAGGCATACAGAGTTCAT-CCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAAAC
* * * * * *
21018676 CAGACCGAGGGTTACAGCAGTAGGATCAGCAGCACATAGAGGGGACCGGGTCGATCCCCGGCTTG
246 CAGACCGACGGTTACAGCAGCAGGACCAGCAACACATAGAGGGGACCGGGGCGATCCCCGACTTG
* * **
21018741 CGCATTCTGCCTCTCCAGCCGGTTGAGTGCCC
311 CGCAATCTGCCTCTCCAGCCGGATGAGCACCC
* *
21018773 GGACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAA
1 GCACGCCCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAA
*
21018838 CCGAGAGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGAACCAGGCCGATCCCCGACTTGTGC
66 CCGAGAGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGAACCAGGCCGATCCCCGACTTGCGC
* * * * * * **
21018903 ATTATGCCTCTTCGATTGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATATGGA
131 ATTATGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGA
21018968 GTTCATTCCCAGTCTAAG
196 GTTCA-TCCCAGTCTAAG
21018986 ATCAGACCAG
Statistics
Matches: 478, Mismatches: 69, Indels: 53
0.80 0.12 0.09
Matches are distributed among these distances:
343 108 0.23
344 2 0.00
348 1 0.00
349 1 0.00
350 4 0.01
351 1 0.00
352 3 0.01
353 3 0.01
354 65 0.14
355 110 0.23
356 6 0.01
357 3 0.01
358 1 0.00
359 4 0.01
360 2 0.00
361 1 0.00
362 2 0.00
365 1 0.00
366 9 0.02
367 148 0.31
368 3 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (342 bp):
GCACGCCCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAA
CCGAGAGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGAACCAGGCCGATCCCCGACTTGCGC
ATTATGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGA
GTTCATCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAAACCAGACCGACGGTTAC
AGCAGCAGGACCAGCAACACATAGAGGGGACCGGGGCGATCCCCGACTTGCGCAATCTGCCTCTC
CAGCCGGATGAGCACCC
Found at i:21018969 original size:159 final size:159
Alignment explanation
Indices: 21018713--21019146 Score: 396
Period size: 159 Copynumber: 2.7 Consensus size: 159
21018703 AGCAGCACAT
** * * * * * ** *
21018713 AGAGGGG-ACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC-AGCCGGTTGAGTGCCCGGA
1 AGAGGGGAACCGGACCGATCCCCGACTTGCACATTATGCCTCTCCGA-CCGGCTCAGCACCCGCA
* * * * *
21018776 CGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACC-GAAC
65 CGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAG-AC
* * *
21018839 CGAGAGTTGTGGCAGCAGGACCGGCAGCACGC
128 CAAGAGTTGTGACAGCAGGACCGACAGCACGC
** * **
21018871 AGAGGGGAACCAGG-CCGATCCCCGACTTGTGCATTATGCCTCTTCGATTGGCTCAGCACCCGCA
1 AGAGGGGAACC-GGACCGATCCCCGACTTGCACATTATGCCTCTCCGACCGGCTCAGCACCCGCA
* * *
21018935 CGCTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGAC
65 CGCTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGAC
* * *
21018998 CAAGGGTTGTGACAGCAGGATCGACAGCACGT
128 CAAGAGTTGTGACAGCAGGACCGACAGCACGC
* * ** * * * * * *
21019030 AGGGGGGGACCGGACCGATCCCCGGTTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCCTGTAC
1 AGAGGGGAACCGGACCGATCCCCGACTTGCACATTATGCCTCTCCGACCGGCTCAGCACCCGCAC
*
21019095 GCTCGTTTCGTGGGTTTGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
66 GCTCGTTTCGTGGG-TTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
21019147 TACGGAGTTC
Statistics
Matches: 222, Mismatches: 43, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
158 15 0.07
159 196 0.88
160 11 0.05
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.23
Consensus pattern (159 bp):
AGAGGGGAACCGGACCGATCCCCGACTTGCACATTATGCCTCTCCGACCGGCTCAGCACCCGCAC
GCTCGTTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAA
GAGTTGTGACAGCAGGACCGACAGCACGC
Found at i:21019147 original size:26 final size:26
Alignment explanation
Indices: 21019118--21019170 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21019108 GTTTGCTTAG
21019118 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
21019144 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21019170 G
1 G
21019171 ATTTTGATCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21021052 original size:26 final size:26
Alignment explanation
Indices: 21021022--21021074 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21021012 GTTGACTTAG
21021022 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
21021048 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21021074 G
1 G
21021075 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21021945 original size:26 final size:26
Alignment explanation
Indices: 21021915--21021968 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
21021905 GTTGACTTAG
21021915 GCATACGGAGTTCA-ACCCTAGTCTAA
1 GCATACGGAGTTCATACCC-AGTCTAA
* *
21021941 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
21021967 GC
1 GC
21021969 TTGAACCAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:21023017 original size:26 final size:26
Alignment explanation
Indices: 21022980--21023032 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21022970 GTTGACTTAG
*
21022980 GCATACAGAGTTCATACCCAGTCTAA
1 GCATACAAAGTTCATACCCAGTCTAA
* * *
21023006 GCATACAAAGTTTATTCCTAGTCTAA
1 GCATACAAAGTTCATACCCAGTCTAA
21023032 G
1 G
21023033 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATACCCAGTCTAA
Found at i:21023461 original size:158 final size:159
Alignment explanation
Indices: 21023101--21023496 Score: 388
Period size: 159 Copynumber: 2.5 Consensus size: 159
21023091 CGATCCCCGG
* * * * ** * * * *
21023101 CTTGCACATTCTGCCTCTCTGGCCGGCTGAGCACCCGCAAACCCATTTCGTGGGTTGGCTTAGGC
1 CTTGCACATTATGCCTCTCCGGCTGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGC
* * ** **** * * *
21023166 ATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TTGGACCGAGGGTTGTGGCAGCAGGACCGGTA
66 ATACGGAGTTCATTGCCA-GTGTAAG-ATCAGACCAAACAGAGGGTTGCGGCAGCAGGACCGGCA
*
21023229 GCACGCAGAGGGGGATCGGGCCAATCCCTGA
129 GCACACAGAGGGGGATCGGGCCAATCCCTGA
* **
21023260 CTTGCACATTATGCCTCTTCGGCTGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
1 CTTGCACATTATGCCTCTCCGGCTGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGC
* * * *
21023325 TTACGGAGTTCATTGCCAGTGTAAGATCAGACCAAACAGAGGGTTGCGGTAGTAGGATCGGCAGC
66 ATACGGAGTTCATTGCCAGTGTAAGATCAGACCAAACAGAGGGTTGCGGCAGCAGGACCGGCAGC
*
21023390 ACACAG-GGGGGATCGGGCCGAT-CCTCGA
131 ACACAGAGGGGGATCGGGCCAATCCCT-GA
** * * * * *
21023418 CTTGTGCATTCTGCCTCTCCTG-TCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
1 CTTGCACATTATGCCTCTCCGGCT-GGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGG
21023482 CATACGGAGTTCATT
65 CATACGGAGTTCATT
21023497 CCATGTCTAA
Statistics
Matches: 192, Mismatches: 41, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 4 0.02
158 86 0.45
159 99 0.52
160 3 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
CTTGCACATTATGCCTCTCCGGCTGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGC
ATACGGAGTTCATTGCCAGTGTAAGATCAGACCAAACAGAGGGTTGCGGCAGCAGGACCGGCAGC
ACACAGAGGGGGATCGGGCCAATCCCTGA
Found at i:21023537 original size:158 final size:158
Alignment explanation
Indices: 21023101--21023542 Score: 487
Period size: 158 Copynumber: 2.8 Consensus size: 158
21023091 CGATCCCCGG
** * *
21023101 CTTGCACATTCTGCCTCTCTGGCCGGCTGAGCACCCGCAAACCCATTTCGTGGGTTGGCTTAGGC
1 CTTGCACATTCTGCCTCTCT-GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* ** * * *
21023166 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCGAGGGTTGTGGCAGCAGGACCGGTAGC
65 ATACGGAGTTCATTCCATGTCTAAGCCCCAACTGAACCGAGGGTTGTGGCAGTAGGACCGGCAGC
*
21023231 ACGCAGAGGGGGATCGGGCCAATCCCTGA
130 ACACAGAGGGGGATCGGGCCAATCCCTGA
* * * * ** * *
21023260 CTTGCACATTATGCCTCTTCGGCTGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
1 CTTGCACATTCTGCCTC-TCTGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * ** ** * * * *
21023325 TTACGGAGTTCATTGCCA-GTGTAAG-ATCAGACCAAACAGAGGGTTGCGGTAGTAGGATCGGCA
65 ATACGGAGTTCATT-CCATGTCTAAGCCCCA-ACTGAACCGAGGGTTGTGGCAGTAGGACCGGCA
*
21023388 GCACACAG-GGGGGATCGGGCCGAT-CCTCGA
128 GCACACAGAGGGGGATCGGGCCAATCCCT-GA
** *
21023418 CTTGTGCATTCTGCCTCTCCTGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
1 CTTGCACATTCTGCCTCT-CTGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* *
21023483 ATACGGAGTTCATTCCATGTCTAAGCCCCAACTGAACCGAGGGTTATGACAGTAGGACCG
65 ATACGGAGTTCATTCCATGTCTAAGCCCCAACTGAACCGAGGGTTGTGGCAGTAGGACCG
21023543 ACAACGGGAT
Statistics
Matches: 223, Mismatches: 53, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
157 7 0.03
158 112 0.50
159 99 0.44
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CTTGCACATTCTGCCTCTCTGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
TACGGAGTTCATTCCATGTCTAAGCCCCAACTGAACCGAGGGTTGTGGCAGTAGGACCGGCAGCA
CACAGAGGGGGATCGGGCCAATCCCTGA
Found at i:21024193 original size:26 final size:26
Alignment explanation
Indices: 21024164--21024216 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21024154 GTTGGCTTAG
**
21024164 GCATATGAAGTTCATTCCTTGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
* *
21024190 GCATTTGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
21024216 G
1 G
21024217 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGTCTAA
Found at i:21025608 original size:26 final size:26
Alignment explanation
Indices: 21025572--21025624 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21025562 GTTGGCTTAG
*
21025572 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
21025598 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
21025624 G
1 G
21025625 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:21026088 original size:159 final size:156
Alignment explanation
Indices: 21025665--21026110 Score: 472
Period size: 158 Copynumber: 2.8 Consensus size: 156
21025655 GACTAGCAGT
* * * * * * *
21025665 AGGATCGACAGCACGCAGGGGGGA-CTGAGCCGATCCCCGGCTTGGGCATTCTGCCTCTCCGGCC
1 AGGATCGACAGCACGCAGAGGGGACCAG-GTCGATCCTCGACTTGCGCATTCTACCTCTCCGGCC
* * * * *
21025729 GGCTGAACACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCA-TCCCTAGTCTA
65 -GCTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCAT-GTCTA
* *
21025793 AGATCATACCAGACTGAGGGTTGTGGTAGC
128 AGATCATA-CAAACCGAGGGTTGTGGTAGC
* * ** * * * *
21025823 AGGATCGATAGCACGTAGAGGGGACCAGGTCGATCCTCGGTTTACGTATTCTACCTCTCCGATCT
1 AGGATCGACAGCACGCAGAGGGGACCAGGTCGATCCTCGACTTGCGCATTCTACCTCTCCG-GCC
* *
21025888 GCTGACCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAG
65 GCTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAG
*
21025953 CCTCAGT-CAAACCGAGGGTTGTGGTAGC
130 -ATCA-TACAAACCGAGGGTTGTGGTAGC
* * * * *
21025981 AGGATCGGCAGGATGCAGAGGGGGACC-GGGCTGATTCCT-GACTTGCGCATTCTACCTGTCCGG
1 AGGATCGACAGCACGCAGA-GGGGACCAGGTC-GA-TCCTCGACTTGCGCATTCTACCTCTCCGG
*
21026044 CCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT-AGGAGTTCATTCCATGTCT
63 CCG-CTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCT
21026108 AAG
127 AAG
21026111 TATATGGAGT
Statistics
Matches: 241, Mismatches: 38, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
158 160 0.66
159 76 0.32
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
AGGATCGACAGCACGCAGAGGGGACCAGGTCGATCCTCGACTTGCGCATTCTACCTCTCCGGCCG
CTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGA
TCATACAAACCGAGGGTTGTGGTAGC
Found at i:21027347 original size:26 final size:26
Alignment explanation
Indices: 21027297--21027349 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21027287 GTTGGCTTAG
*
21027297 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
21027323 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
21027349 G
1 G
21027350 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:21027713 original size:26 final size:26
Alignment explanation
Indices: 21027677--21027729 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21027667 GTTGACTTAG
*
21027677 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
* *
21027703 GCATACGGAGTTTATTACCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
21027729 G
1 G
21027730 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:21028004 original size:159 final size:158
Alignment explanation
Indices: 21027743--21028206 Score: 493
Period size: 159 Copynumber: 2.9 Consensus size: 158
21027733 GAACTGGACC
* * * *
21027743 GAGGGTTGCGACAGCAGGATCGGCAGCATGCAGGGGGGACCGGGTCAATCCCCAGCTTATGCATT
1 GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTATGCATT
*** * * * * *
21027808 ATGCCTCTCGGGCTGGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
66 ATGCCTCTTAAGCTGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
21027873 CATTCCATGTCTAAGCCCTAG-CCAGACT
131 CATTCCATGTCTAAGCCC-AGACCAGACT
* * * * * * *
21027901 GAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGGGGGACCGAGTTGATCCCCAGTTTGTGCAT
1 GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAG-GGGGGACCGGGTCGATCCCCAGCTTATGCAT
** * * *
21027966 TATGCCTCTTAAGCTGGCTCCGCACCCGAACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
65 TATGCCTCTTAAGCTGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
** *
21028031 TCATTCCCA-GTCTAAGATCAGACCGGACT
130 TCATT-CCATGTCTAAGCCCAGACCAGACT
* * * * * *
21028060 AAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGAGGGGACCGGGCCGATCCCCAACTTACGCAT
1 GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGG-GGGGACCGGGTCGATCCCCAGCTTATGCAT
* ** * * * * *
21028125 TCTGCCTC-TCCGGTCAGCTGAGCGCCCGGACACTCGTTTCGTGGGTTGGCTTAAGCATACGGAG
65 TATGCCTCTTAAGCT-GGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
21028189 TTCATTCCATGTCTAAGC
129 TTCATTCCATGTCTAAGC
21028207 ATATGGAGTT
Statistics
Matches: 246, Mismatches: 54, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
158 36 0.15
159 207 0.84
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTATGCATT
ATGCCTCTTAAGCTGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCCCAGACCAGACT
Found at i:21028214 original size:26 final size:26
Alignment explanation
Indices: 21028176--21028231 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
21028166 TGGGTTGGCT
21028176 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
*
21028202 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
21028228 TAAG
1 TAAG
21028232 ATCAGATCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:21028425 original size:26 final size:26
Alignment explanation
Indices: 21028388--21028440 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21028378 GTTGACTTAG
21028388 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCCT-GTCTAA
*
21028414 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATTCCCTGTCTAA
21028440 G
1 G
21028441 ATCAACTTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCTGTCTAA
Found at i:21028761 original size:26 final size:26
Alignment explanation
Indices: 21028731--21028783 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21028721 GTTGACTTAG
*
21028731 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
21028757 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21028783 G
1 G
21028784 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21029482 original size:26 final size:26
Alignment explanation
Indices: 21029453--21029505 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21029443 GTTGACTTAG
21029453 GCATATGGACTTCATCCCCAGTCTAA
1 GCATATGGACTTCATCCCCAGTCTAA
* *
21029479 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGACTTCATCCCCAGTCTAA
21029505 G
1 G
21029506 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGGACTTCATCCCCAGTCTAA
Found at i:21029953 original size:158 final size:156
Alignment explanation
Indices: 21029479--21029980 Score: 447
Period size: 158 Copynumber: 3.2 Consensus size: 156
21029469 CCCAGTCTAA
* * * **
21029479 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACTGAGGGTTACGACAGCAAGATCGGT
1 GCATACGGAGTTCA-TCCCATGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGCAGGATCGAC
** * * * * * * *
21029543 AGCACATAGGGGGGACCGGATCGATCCTCGGCTTACGCATTCTGCCTCTCCGTCCGACTGAGTGA
65 AGCACGCAGGGGGGATCGG-CCGATCCACGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG-
*
21029608 CCGCACACTCGTTTTGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTTGTGGGTTGGCTTAG
* * * ** * * * * * * *
21029637 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCGGACCGAGGGTTGTGGCAGCGGGA-CTAG
1 GCATACGGAGTTCATCCCATGTCTAAGATCGGA-CCAGACTGAGGGTTGCGACAGCAGGATCGA-
* * * * * * *
21029700 CAGCATGCAGAAGGGGATCGGGCCGATCCCCGGCTTGCACATTATACCTCTCCGG-CGGACTCAG
64 CAGCACGCAG-GGGGGATC-GGCCGATCCACGGCTTGCGCATTCTGCCTCTCCGGCCGG-CTGAG
* * *
21029764 CGCCCGCACGCTCTTTTTATGGGTTGACTTAG
126 CG-CCGCACGCTCGTTTTGTGGGTTGGCTTAG
* *
21029796 GCATACAGAGTTCAATCCCA-GTCTAAGATCGGACCAAACTGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTC-ATCCCATGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGCAGGATCGAC
** * * *
21029860 AGCACGCAGGGGGGATCGAGCCGGGCCACGGCTTGCGCATTCTGCCTTTCTGGCCGGTTGAGCGC
65 AGCACGCAGGGGGGATCG-GCCGATCCACGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
*
21029925 CTGCACGCTCGTTTCGTGGGTTGGCTTAG
129 C-GCACGCTCGTTTTGTGGGTTGGCTTAG
*
21029954 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATCCCATGTCTAAG
21029981 CATACGGAGT
Statistics
Matches: 263, Mismatches: 68, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
157 15 0.06
158 126 0.48
159 111 0.42
160 11 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATCCCATGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGGGGGGATCGGCCGATCCACGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCG
CACGCTCGTTTTGTGGGTTGGCTTAG
Found at i:21030005 original size:26 final size:26
Alignment explanation
Indices: 21029954--21030006 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21029944 GTTGGCTTAG
*
21029954 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
21029980 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
21030006 G
1 G
21030007 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:21031226 original size:26 final size:26
Alignment explanation
Indices: 21031196--21031251 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
21031186 TGGGTTGACT
* *
21031196 TAAGCGTACGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
*
21031222 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
21031248 TAAG
1 TAAG
21031252 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:21031589 original size:866 final size:871
Alignment explanation
Indices: 21029442--21031678 Score: 2718
Period size: 880 Copynumber: 2.6 Consensus size: 871
21029432 TCATTTCGTT
* * *
21029442 GGTTGACTTAGGCATATGGACTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * ** * ** * * *
21029507 TCGGACCAGACTGAGGGTTAC-GACAGCAAGATCGGTAGCACATAGGGGGGACCGGATCGATCCT
66 TCAGACCGGACCAAGGGTTGCTG-CAGCAAGATCGACAGCACACAGGGGGGACTGGGTCGATCCT
* * * *
21029571 CGGCTTACGCATTCTGCCTCTCCGTCCGACTGAG-TGACCGCACACTCGTTTTGTGGGTTGGCTT
130 CGGCTTACGCATTCTGCCTCTCCG-CCGACTGAGCT-CCCACACGCCCGTTTTGTGGGTTGGCTT
* *
21029635 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACTA-
193 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTTGCAGCGGGAC-AG
* *
21029699 GCAGCATGCAGAAGGGGATCGGGCCGATCCCCGGCTTGCACATTATACCTCTCCGGCGGACTCAG
257 GCAGCACGCAGAAGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCGG-CTCAG
* * * * *
21029764 CGCCCGCACGCTCTTTTTATGGGTTGACTTAGGCATACAGAGTTCAATCCC-AGTCTAAGATCGG
321 CACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCTAGTCTAAGATCGG
* * * **
21029828 ACCAAACTGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCGGGCCACGGCT
386 A-CAAACTGAGGGTTGCGGCAGCAGGATTGACAGCACGCAGGGGGGATCGGGCCGATCCACGGCT
* * * ** * *
21029893 TGCGCATTCTGCCTTTCTGGCCGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
450 TGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
* *
21029958 ACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCAGATCGGACCGAG
515 ACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAACCTAAGATCAGATCGGACCGAG
* * ** * *
21030023 GGTTACAGCTGTAGGACCAGTAGTAGGATCGACAGCATGCAGGGGGGACTGGGTCGATCCTCGAC
580 GGTTACAGCTGCAAGACCAACAGCAGGATCGACAGCATGCAGGGGGGACTAGGTCGATCCTCGAC
*
21030088 TTGCGCATTCTACCTCTCCGACAGCTGAGCGCCTGCACACTCATTTCGTGGGTTGGCTTAGGCAT
645 TTGCGCATTCTACCTCTCCGACAGCTGAGCACCTGCACACTCATTTCGTGGGTTGGCTTAGGCAT
* * * *
21030153 ACAGAGTTCATTCCATGTCTAAGCCCTAGTCGAACCGAAGGTTGTGGCAGCAAGATCGACAGCGA
710 ACAGAGTTCATTCCATATCTAAGCCCCAGCCGAACCGAAGGTTATGGCAGCAAGATCGACAGCGA
* ** * *
21030218 GATCGGCAGCACACAGAAGGGGACCGGGCTGATCCCCAGCTTATGCATTATGCCTCTCTGATTGG
775 GATCAGCAGCACACAGAAGGGGACCGAACTGATCCCCAGCTTACGCATTATGCCTCTCT-ATCGG
* **
21030283 CCTCTCCGACTGACTGAGCGCCCACACGCTCATTTTGTG
839 ---C-CCGACTGAC--AGCGCCCACACGCTAATTTCATG
**
21030322 GGTTGACTTAGGCATACATAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
21030387 TCAGACCGGACCGAA-GGTTGCTGCCGTAAGATCGACAGCATACAGGGGGGACTGGGTCGATCCT
66 TCAGACCGGACC-AAGGGTTGCTGCAGCAAGATCGACAGCACACAGGGGGGACTGGGTCGATCCT
* * * *
21030451 CGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCTCCCACAGGCCTGTTTTGTGGGTTGGCTTA
130 CGGCTTACGCATTCTGCCTCTCC-GCCGACTGAGCTCCCACACGCCCGTTTTGTGGGTTGGCTTA
* * *
21030516 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTTACAGTGGGATC-GG
194 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTTGCAGCGGGA-CAGG
* * * *
21030580 CAGCACGCAGATGGGGATCGGGTCGATCCCCGACTTGCACATTATGCCTCTCCAGCCGGCTCAGC
258 CAGCACGCAGAAGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCC-GGCGGCTCAGC
* * *
21030645 ACTC-ACATGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CCTAGTCTAAGATCAG
322 ACCCGA-ACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCTAGTCTAAGATCGG
*** * * * * * * *
21030708 ACAAAAAAAAGGGTTGGGGCAGCAAGATTGATAGCACACAGGGGGGACCGGGCCGATCCCCAGCT
386 AC-AAACTGAGGGTTGCGGCAGCAGGATTGACAGCACGCAGGGGGGATCGGGCCGATCCACGGCT
* * **
21030773 TGCGCATTCTGCCTCTCCGACTGACTGAGTGCCCGCACGCTCGTTTCATTTGTTGGCTTAGGCAT
450 TGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
* **
21030838 ACGGAGTTCATTCCATGTCTAAGCATACAGAGTTGATTCCCAACCTAAGATTGGA-CTGGACCGA
515 ACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAACCTAAGATCAGATC-GGACCGA
* *
21030902 GGGTTAC-GGTAGCAAGACCAACAGCAGGATCGGCAGCATGCAGGGGGGA-TCAGGTCG-TCC-C
579 GGGTTACAGCT-GCAAGACCAACAGCAGGATCGACAGCATGCAGGGGGGACT-AGGTCGATCCTC
** * **
21030963 TGACTTGCGCATTCTACCTCTCCGGTAGCTGAGTACCTGCATGCTCATTTCGTGGGTTGGCTTAG
642 -GACTTGCGCATTCTACCTCTCCGACAGCTGAGCACCTGCACACTCATTTCGTGGGTTGGCTTAG
* * * *
21031028 GCATACAGAGTTCATTCCATATCTAAGCCCCAGCCGGATCGAAGGTTATGGCAGCAGGATCGGCA
706 GCATACAGAGTTCATTCCATATCTAAGCCCCAGCCGAACCGAAGGTTATGGCAGCAAGATCGACA
* * * * * *
21031093 GCGGGATCAGCAGCACGCAGAGGGGGATCGAACTGATCCTCGGCTTACGCATTATGCCT-T-T-T
771 GCGAGATCAGCAGCACACAGAAGGGGACCGAACTGATCCCCAGCTTACGCATTATGCCTCTCTAT
21031155 CGG-CCGACTGA-A-CGCCCACACG-TGAATTTCATG
836 CGGCCCGACTGACAGCGCCCACACGCT-AATTTCATG
* * *
21031188 GGTTGACTTAAGCGTACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
21031253 TCAGACTGGACCAAGGGTTGCTGTAGCAGGATCGACAGCACGCAGGAGGGACTGGGTCGATCCTC
66 TCAGACCGGACCAAGGGTTGCTGCAGCAAGATCGACAGCACACAGGGGGGACTGGGTCGATCCTC
* * **
21031318 GGCTTACGCATTTTGCCTCTCCAGCCGAATGAGCTCCCACACGCCCGTTTCATGGGTTGGCTTAG
131 GGCTTACGCATTCTGCCTCTCC-GCCGACTGAGCTCCCACACGCCCGTTTTGTGGGTTGGCTTAG
* * * *
21031383 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTTGTAACGGGACAGGTA
195 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTTGCAGCGGGACAGGCA
* * * * * *
21031448 GCACGTAGAGGGGGACCGGACCGATCCCCGGCTTGCACATTATGCCTCTCCGGTTGGTTCAGCAC
260 GCACGCAGAAGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGG-CGGCTCAGCAC
* * *
21031513 CCGAACGCTCGTTTCATGGGTTGACATAGGCATAC-GAAGTTCATTCCCTA-TCTAAGATTGGAT
324 CCGAACGCTCATTTCATGGGTTGACTTAGGCATACAG-AGTTCATTCCCTAGTCTAAGATCGGA-
* * * * **
21031576 CGAACTGAGGGTTGCAGTAGCAGGATTGACAGCACGCAATGGGGGATCGGGCCGATCCGTGGCTT
387 CAAACTGAGGGTTGCGGCAGCAGGATTGACAGCACGC-AGGGGGGATCGGGCCGATCCACGGCTT
* * ** * *
21031641 ACGCATTCTACCTCTCCGGTCGGCTGAGCGCCCACACG
451 GCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACG
21031679 TAGGGCTGTA
Statistics
Matches: 1155, Mismatches: 179, Indels: 59
0.83 0.13 0.04
Matches are distributed among these distances:
865 6 0.01
866 369 0.32
867 59 0.05
870 8 0.01
875 3 0.00
877 1 0.00
878 2 0.00
879 174 0.15
880 524 0.45
881 9 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (871 bp):
GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACCGGACCAAGGGTTGCTGCAGCAAGATCGACAGCACACAGGGGGGACTGGGTCGATCCTC
GGCTTACGCATTCTGCCTCTCCGCCGACTGAGCTCCCACACGCCCGTTTTGTGGGTTGGCTTAGG
CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTTGCAGCGGGACAGGCAG
CACGCAGAAGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCGGCTCAGCACCC
GAACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCTAGTCTAAGATCGGACAAA
CTGAGGGTTGCGGCAGCAGGATTGACAGCACGCAGGGGGGATCGGGCCGATCCACGGCTTGCGCA
TTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAACCTAAGATCAGATCGGACCGAGGGTTAC
AGCTGCAAGACCAACAGCAGGATCGACAGCATGCAGGGGGGACTAGGTCGATCCTCGACTTGCGC
ATTCTACCTCTCCGACAGCTGAGCACCTGCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAG
TTCATTCCATATCTAAGCCCCAGCCGAACCGAAGGTTATGGCAGCAAGATCGACAGCGAGATCAG
CAGCACACAGAAGGGGACCGAACTGATCCCCAGCTTACGCATTATGCCTCTCTATCGGCCCGACT
GACAGCGCCCACACGCTAATTTCATG
Found at i:21032226 original size:26 final size:26
Alignment explanation
Indices: 21032190--21032239 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
21032180 GGCTTAGGCA
21032190 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGGAGTTCATTCCCA-GTCTAAGCG
21032216 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
21032240 GTCAGACAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:21033034 original size:26 final size:26
Alignment explanation
Indices: 21032998--21033050 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21032988 GTTGACTTAG
21032998 GCATACGGAGTTCATCTCC-AGTCTAA
1 GCATACGGAGTTCAT-TCCTAGTCTAA
21033024 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
21033050 G
1 G
21033051 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:21033368 original size:26 final size:26
Alignment explanation
Indices: 21033338--21033389 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21033328 GTTGGCTTAG
21033338 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTGCCA-GTCTAA
* *
21033364 GCATATGGAGTTCCTTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
21033390 CAGTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:21034086 original size:26 final size:26
Alignment explanation
Indices: 21034056--21034108 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21034046 GTTGACATAG
21034056 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21034082 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21034108 G
1 G
21034109 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21034422 original size:159 final size:155
Alignment explanation
Indices: 21034089--21034423 Score: 379
Period size: 159 Copynumber: 2.1 Consensus size: 155
21034079 TAAGCATATG
* * ** * *
21034089 GAGTTCATTCCCAGTCTAAGATCAGATCGATCGAGGGTTACGGTAGTAGGATCGACAGCACATAG
1 GAGTTCATTCCCAGTCTAAGATCAAACCGATCGAGGGTTACGACAGCAAGATCGACAGCACATAG
* * * * *
21034154 GGGGGACCGGGTGGATCCCCGACTTGCGCATTCTGCCTCTCCGCTGGCTGAACGCCCGCAGGCTC
66 GGGGGACCGGGTCGATCCCCGACTTGCACATTCTGCCTCTCCGCTAGCTGAACGCCCACACGCTC
*
21034219 ATTTTGTGGGTTGACTTAGGCATAC
131 ATTTCGTGGGTTGACTTAGGCATAC
* *
21034244 GAAGTTCATTCCCAATCTAAGATCAAACCAGA-CGGAGGGTTACGACAGCAAGATCGACAGCACG
1 G-AGTTCATTCCCAGTCTAAGATCAAACC-GATC-GAGGGTTACGACAGCAAGATCGACAGCACA
* * * * * *
21034308 TAGGGGGGGATCGGGTCGAGT-CTCGACTTGCACATTCTGTCTCTCCGGTCAGCTGAGCGCCCAT
63 TA-GGGGGGACCGGGTCGA-TCCCCGACTTGCACATTCTGCCTCTCCGCT-AGCTGAACGCCCAC
* *
21034372 ACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
125 ACGCTCATTTCGTGGGTTGACTTAGGCATAC
21034403 AGAGTTCATT-CCATGTCTAAG
1 -GAGTTCATTCCCA-GTCTAAG
21034424 CATACGGAGT
Statistics
Matches: 149, Mismatches: 23, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
155 1 0.01
156 25 0.17
157 29 0.19
158 41 0.28
159 52 0.35
160 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (155 bp):
GAGTTCATTCCCAGTCTAAGATCAAACCGATCGAGGGTTACGACAGCAAGATCGACAGCACATAG
GGGGGACCGGGTCGATCCCCGACTTGCACATTCTGCCTCTCCGCTAGCTGAACGCCCACACGCTC
ATTTCGTGGGTTGACTTAGGCATAC
Found at i:21034812 original size:26 final size:26
Alignment explanation
Indices: 21034776--21034828 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21034766 GTTGACTTAG
*
21034776 GCATACAGAGTTTA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
21034802 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21034828 G
1 G
21034829 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21035327 original size:26 final size:26
Alignment explanation
Indices: 21035277--21035329 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21035267 GTTGGCTTAG
*
21035277 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
21035303 GCATGCGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
21035329 G
1 G
21035330 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:21035863 original size:159 final size:157
Alignment explanation
Indices: 21035500--21036038 Score: 411
Period size: 157 Copynumber: 3.4 Consensus size: 157
21035490 CCCAGTCTAA
* * * * * * *
21035500 GCATATGGAGTTTATTCCCAGTCTAAGATCAGACCGGTCTGAGGGTTGCGGTAGAAGGATCGACA
1 GCATATGGAGTTCATTCCCATTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGACCGACA
* * * * *
21035565 GCACGCAGGGGGGACCCGATCGATCCCCGCTTGCGCATTTTGCCTCTCTGGTAGGCTGAGTGCCC
66 GCACGCAAGGGGGACCCGAGCGATCCCCGCTTGCGCATTATGCCTCTCTGGTAGGCTCAGCGCCC
*
21035630 GCACGCCTGTTTCATGGTTTGGATTAG
131 GCACGCCTGTTTCATGGGTTGGATTAG
* ** * *
21035657 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGCAGCGGGACCGA
1 GCATATGGAGTTCATTCCCAT-TCTAAG-ATCAGACCGGACTGAGGGTTGTGGCAGCAGGACCGA
* *
21035720 TAGCACGCAAAGGGGGA-CCGAGCTGATTCCCGACTTGCGCATTATGCCTCT-TCGGTAGGCTCA
64 CAGCACGC-AAGGGGGACCCGAGC-GATCCCCG-CTTGCGCATTATGCCTCTCT-GGTAGGCTCA
** * *
21035783 GCGCTTGCACGCTCAT-TTT-GTGGGTT-GACTTAT
125 GCGCCCGCACGC-C-TGTTTCATGGGTTGGA-TTAG
* * *
21035816 GCATATGGAGTTCATTCCCATTCTAAGATCAGATCGGACTG-GTGGTTGTGGCAGCAAGATCGAC
1 GCATATGGAGTTCATTCCCATTCTAAGATCAGACCGGACTGAG-GGTTGTGGCAGCAGGACCGAC
* * ** * * * * * * ** *
21035880 AGCACACAGGGGGGA-ATGGGTCGATCCCCAACTTGCGCATTCTGCCTCTCCGATCGATTGAGC-
65 AGCACGCAAGGGGGACCCGAG-CGATCCCC-GCTTGCGCATTATGCCTCTCTGGTAGGCTCAGCG
* * *
21035943 ACCGCACG-CTCGTTCCATGGGTTGGCTTAG
128 CCCGCACGCCT-GTTTCATGGGTTGGATTAG
** * ** *
21035973 GCATACAGAGTTCATTCCAATTCTAAGCCCCAG-CCGGA-TCGAGGGTTGTGGTAGCAGGACCGA
1 GCATATGGAGTTCATTCCCATTCTAAG-ATCAGACCGGACT-GAGGGTTGTGGCAGCAGGACCGA
21036036 CAG
64 CAG
21036039 TAGGATTGGC
Statistics
Matches: 297, Mismatches: 63, Indels: 44
0.74 0.16 0.11
Matches are distributed among these distances:
154 1 0.00
155 1 0.00
156 6 0.02
157 118 0.40
158 68 0.23
159 94 0.32
160 8 0.03
161 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATATGGAGTTCATTCCCATTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGACCGACA
GCACGCAAGGGGGACCCGAGCGATCCCCGCTTGCGCATTATGCCTCTCTGGTAGGCTCAGCGCCC
GCACGCCTGTTTCATGGGTTGGATTAG
Found at i:21036247 original size:26 final size:26
Alignment explanation
Indices: 21036211--21036263 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21036201 GTTGACTTAG
21036211 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21036237 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21036263 G
1 G
21036264 ATTGGTTTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21036431 original size:26 final size:26
Alignment explanation
Indices: 21036395--21036447 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21036385 GTTGGCTTAG
*
21036395 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTGCATTCCCA-GTCTAA
21036421 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
21036447 G
1 G
21036448 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTGCATTCCCAGTCTAA
Found at i:21037147 original size:26 final size:26
Alignment explanation
Indices: 21037109--21037161 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21037099 GTTGATTTAG
21037109 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21037135 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21037161 G
1 G
21037162 ATCGGACCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21037986 original size:26 final size:26
Alignment explanation
Indices: 21037957--21038008 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21037947 TTGACTTAGC
*
21037957 CATACGTAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
* *
21037983 CATACGGAGTTCATTCCCAGTGTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
21038009 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:21038487 original size:26 final size:26
Alignment explanation
Indices: 21038458--21038510 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21038448 GTTGGCTTAG
*
21038458 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
21038484 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21038510 G
1 G
21038511 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21038687 original size:25 final size:25
Alignment explanation
Indices: 21038654--21038711 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 25
21038644 GTTGACTTAG
*
21038654 GCATACGGAGTTTATCCCCAGTCTAA
1 GCAT-CGGAGTTCATCCCCAGTCTAA
*
21038680 GCATCGGAGTTCATTCCCAGTCTAA
1 GCATCGGAGTTCATCCCCAGTCTAA
21038705 G-ATCGGA
1 GCATCGGA
21038712 TCAGACCGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 6 0.20
25 20 0.67
26 4 0.13
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (25 bp):
GCATCGGAGTTCATCCCCAGTCTAA
Found at i:21039069 original size:197 final size:196
Alignment explanation
Indices: 21038729--21039089 Score: 456
Period size: 197 Copynumber: 1.8 Consensus size: 196
21038719 GATGGTTACG
* * ** * *
21038729 GCAGCAGGATCGGCAGCACGCAAGGGGGATCGAGTTGATCCTTGGCTTGTGCATTCTGCCTCTCT
1 GCAGCAGGATCGACAGCACGCAAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCC
** * * *
21038794 GGCCGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTATGCATACGAAGTTCATTCCATGT
66 AACCGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGAAGTCCATTCCATGT
* * *
21038859 CTGAGCATACGGAGTTTATTCCCAGTCTAAGATCAGACTAGATCGAGGGTTACGACAACAGGACC
131 CTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACTAGATCGAGGGTTACGACAACAGGACC
21038924 A
196 A
* * *
21038925 GCAGCAGGATCGATAGCATGTAAGGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTC
1 GCAGCAGGATCGACAGCACGCAA-GGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTC
* * * * * * *
21038990 CAATCGACTGAGC-GCCGATACGCTCGTTTCGTGGGTTGGTTTAGGCATAAGGAGTCCATCTCTA
65 CAACCGACTGAGCACCCG-CACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGAAGTCCAT-TCCA
*
21039054 -GTCTAAGCTTACGGAGTTCATTCCCAATCTAAGATC
128 TGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC
21039090 GGACCAGACT
Statistics
Matches: 137, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
196 22 0.16
197 112 0.82
198 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (196 bp):
GCAGCAGGATCGACAGCACGCAAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCC
AACCGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGAAGTCCATTCCATGT
CTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACTAGATCGAGGGTTACGACAACAGGACC
A
Found at i:21039215 original size:381 final size:380
Alignment explanation
Indices: 21038299--21039241 Score: 1121
Period size: 381 Copynumber: 2.5 Consensus size: 380
21038289 GTTAACTTAG
* * * * * *
21038299 GCTTACAGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGTGGTAGCGGGATCGATA
1 GCTTACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGGTTGTGGCAGCAGGATCGGTA
* * * * * * * * *
21038364 GTACACAGGGGAGGATCGGGCCGATCCCCGGCTTGCACATTTTGCCTCTCTGACCAGCTT-AGCG
66 GCACGCAGGGG-GGATCGAGTCGATCCTCGGCTTGCGCATTATGCCTCTCTGGCC-GATTGAGCG
* * *
21038428 CCTGTACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAA
129 CCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAA
* ** *
21038493 GTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGCTGCAGTAGTACGACCAGTAACAGGATCG
194 GTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGCTACAGTACAACGACCAGCAACAGGATCG
* * * *
21038558 ACAGCATACGGGGGGGATCAGGCCGTTCCTCAACTTGCGCATTCTGCTTCTCCAACGGACTGAGC
259 ACAGCATACAGGGGGGATCAGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCAACGGACTGAGC
* **
21038623 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAA
324 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTCCATCCCCAGTCTAA
* * ** *
21038680 GCAT-CGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGATGGTTACGGCAGCAGGATCGGCA
1 GCTTACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGGTTGTGGCAGCAGGATCGGTA
* * * * * * *
21038744 GCACGCAAGGGGGATCGAGTTGATCCTTGGCTTGTGCATTCTGCCTCTCTGGCCGACTGAGCACC
66 GCACGCAGGGGGGATCGAGTCGATCCTCGGCTTGCGCATTATGCCTCTCTGGCCGATTGAGCGCC
* * * * *
21038809 CGCACGCCCGTTTCGTGGGTTGGCTTATGCATACGAAGTTCATTCCATGTCTGAGCATACGGAGT
131 CGTACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGT
* * *
21038874 TTATTCCCAGTCTAAGATCAGA-CTAGATCGAGGGTTAC-G-ACAACAGGACCAGCAGCAGGATC
196 TCATTCCCAGTCTAAGATCAGATC-AGATCGAGGGCTACAGTACAAC--GACCAGCAACAGGATC
* * **
21038936 GATAGCATGTA-AGGGGGGATC-GAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCAATC-GAC
258 GACAGCA--TACAGGGGGGATCAG-GCCGATCCCCAACTTGCGCATTCTGCCTCTCCAA-CGGAC
* * ** * *
21038998 TGAGCG-CCGATACGCTCGTTTCGTGGGTTGGTTTAGGCATAAGGAGTCCATCTCTAGTCTAA
319 TGAGCGCCCG-CACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTCCATCCCCAGTCTAA
* * * *
21039060 GCTTACGGAGTTCATTCCCAATCTAAGATCGGACCAGACTGAAGGTTGTGGCAACAGGATCGGTA
1 GCTTACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGGTTGTGGCAGCAGGATCGGTA
* * *
21039125 GCACGCAGGGGGGACCGAGTCGATCCTCGGCTTGCGCATTATGCCTCTCTGGTCGGTTGAGCGCC
66 GCACGCAGGGGGGATCGAGTCGATCCTCGGCTTGCGCATTATGCCTCTCTGGCCGATTGAGCGCC
* *
21039190 CGTACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
131 CGTACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
21039242 CAGCCCTAGC
Statistics
Matches: 471, Mismatches: 81, Indels: 20
0.82 0.14 0.03
Matches are distributed among these distances:
377 3 0.01
378 4 0.01
379 153 0.32
380 151 0.32
381 160 0.34
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (380 bp):
GCTTACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGGTTGTGGCAGCAGGATCGGTA
GCACGCAGGGGGGATCGAGTCGATCCTCGGCTTGCGCATTATGCCTCTCTGGCCGATTGAGCGCC
CGTACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGT
TCATTCCCAGTCTAAGATCAGATCAGATCGAGGGCTACAGTACAACGACCAGCAACAGGATCGAC
AGCATACAGGGGGGATCAGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCAACGGACTGAGCGC
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTCCATCCCCAGTCTAA
Found at i:21039426 original size:26 final size:26
Alignment explanation
Indices: 21039377--21039429 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21039367 GTTGGCTTAG
*
21039377 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
21039403 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
21039429 G
1 G
21039430 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:21040635 original size:26 final size:26
Alignment explanation
Indices: 21040599--21040651 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21040589 GTTGGCTTAG
*
21040599 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
21040625 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21040651 G
1 G
21040652 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21040751 original size:184 final size:184
Alignment explanation
Indices: 21040441--21040810 Score: 440
Period size: 184 Copynumber: 2.0 Consensus size: 184
21040431 GTTGACTTAG
* * * *
21040441 GCATACAGATTTCATTCCCAGTCTAAGATTGAATCAAACCAAGGGTTGCTGCAGTAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATAGAATCAAACCAAGGGTTGCTGCAGCAGGATCAACA
* * * * *
21040506 GCACGCAGGGGGGATCATGTCGGTCCCCGGCTTGCCCATTCTCCCTCTCTGGCCTGCTGAGCGCC
66 GCACGCAGGGGGGATCAGGTCGATCCCCGGCTTGCCCATTCTCCCTCTCCGACCGGCTGAGCGCC
* *
21040571 CGCACGAACATTTCGTGGGTTGGCTTAGGCATA-CGGAGTTCATTCCATGTCTAA
131 CGCACGAACATTTCATGGGTTGGCTTAGGCATAGC-GAGTTCATCCCATGTCTAA
** * *
21040625 GCATACAGAGTTCATTCCCAGTCTAAGATCAG-ATCGGATCGAGGGTTGC-GACAGCAGGATCAA
1 GCATACAGAGTTCATTCCCAGTCTAAGAT-AGAATCAAACCAAGGGTTGCTG-CAGCAGGATCAA
* * * * * ** *
21040688 CAGCATGCAGGGGGGATCGGGTTGATCCTCGTCTTGGGCATTCTGCCTCTCCGACCGGCTGAGCG
64 CAGCACGCAGGGGGGATCAGGTCGATCCCCGGCTTGCCCATTCTCCCTCTCCGACCGGCTGAGCG
* ** * *
21040753 CCCGTACGCCCGTTTCATGTGTTGGCTTAGGCATAGCGAGTTCATCCCATGTCTAA
129 CCCGCACGAACATTTCATGGGTTGGCTTAGGCATAGCGAGTTCATCCCATGTCTAA
21040809 GC
1 GC
21040811 CCCAGCCAGA
Statistics
Matches: 155, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
183 1 0.01
184 152 0.98
185 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.25
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATAGAATCAAACCAAGGGTTGCTGCAGCAGGATCAACA
GCACGCAGGGGGGATCAGGTCGATCCCCGGCTTGCCCATTCTCCCTCTCCGACCGGCTGAGCGCC
CGCACGAACATTTCATGGGTTGGCTTAGGCATAGCGAGTTCATCCCATGTCTAA
Found at i:21041136 original size:26 final size:26
Alignment explanation
Indices: 21041106--21041158 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21041096 GTTAGCTTAG
*
21041106 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
21041132 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
21041158 G
1 G
21041159 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:21041343 original size:196 final size:195
Alignment explanation
Indices: 21041009--21041525 Score: 646
Period size: 196 Copynumber: 2.6 Consensus size: 195
21040999 TAGTAAAATT
* *
21041009 GATAGCACGCAGGGGGGATCGGGCCGATCCCCAGCATACGCATTCTGCCTCTTCGATCGACTGAG
1 GATAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGATCGACTGAG
* *
21041074 CGGCCGCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
66 C-GCCGCACGCTAGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
* *
21041139 GAGTTCATTCCAAGTCTAAGATCGGAC-CGGACCGAGGATTGCGACAGCAGGACCAGCAGCAGGA
130 GAGTTCATTCCAAGTCTAAGATCAGACTCGG-CCGAGGATTGCGACAACAGGACCAGCAGCAGGA
21041203 TC
194 TC
* * *
21041205 GATAGCATGCAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGATCGACTGAG
1 GATAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGATCGACTGAG
*
21041270 CGCTCGCACGCTAGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATG
66 CGC-CGCACGCTAGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
* * * * * ** *
21041335 GAGTTCATTCCCAGTTTAAGATCAGACTTGGTCGAGGGTTGCGGTAATAGGACCAGCAGCAGGAT
130 GAGTTCATTCCAAGTCTAAGATCAGACTCGGCCGAGGATTGCGACAACAGGACCAGCAGCAGGAT
*
21041400 T
195 C
* * * * * * * * * * *
21041401 GGTAGCACACAGGAGGGATCGAGCCAATCCCCGACTTCCACATTCTGCCTTTTCG-GCCAGCTGA
1 GATAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGATCGA-CTGA
* * *
21041465 GCGCCCGCACACTCA-TTTCGTGGGTTGGTTTAGTG-ATACGGAGTTCATTCCATGTCTAAGC
65 GCG-CCGCACGCT-AGTTTCATGGGTTGGCTTAG-GCATACGGAGTTCATTCCATGTCTAAGC
21041526 CATAACCGGA
Statistics
Matches: 279, Mismatches: 36, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
195 4 0.01
196 270 0.97
197 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (195 bp):
GATAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGATCGACTGAG
CGCCGCACGCTAGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGG
AGTTCATTCCAAGTCTAAGATCAGACTCGGCCGAGGATTGCGACAACAGGACCAGCAGCAGGATC
Found at i:21042222 original size:26 final size:26
Alignment explanation
Indices: 21042190--21042260 Score: 99
Period size: 26 Copynumber: 2.7 Consensus size: 26
21042180 AGGCTTATGA
*
21042190 AGTTCATTGCATGTCTAAGCATACAG
1 AGTTCATTCCATGTCTAAGCATACAG
**
21042216 AGTTCATTCCATGTCTAAGCATATGG
1 AGTTCATTCCATGTCTAAGCATACAG
21042242 AGTTCATTCCCA-GTCTAAG
1 AGTTCATT-CCATGTCTAAG
21042261 ATTGGACCGG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 38 0.93
27 3 0.07
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32
Consensus pattern (26 bp):
AGTTCATTCCATGTCTAAGCATACAG
Found at i:21042442 original size:26 final size:26
Alignment explanation
Indices: 21042405--21042457 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21042395 GCTGACTTAG
*
21042405 GCATACGGAGTTC-TTCCCCAGTCTAA
1 GCATACGAAGTTCATT-CCCAGTCTAA
*
21042431 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21042457 G
1 G
21042458 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21043818 original size:158 final size:157
Alignment explanation
Indices: 21043402--21043809 Score: 492
Period size: 158 Copynumber: 2.6 Consensus size: 157
21043392 TACCACCCGT
* * ** * **
21043402 TCGATCCCCGGCTTGTGCATCCTGCCTCTCTGGTCGGCTGAGCGTTCGCACGCTTGTTTCACAGG
1 TCGAT-CCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* * * ** *
21043467 TTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCG
65 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCA
*
21043532 GGATCGACAGCACGTAGAGGGGAACGGG
130 GGATCGACAGCAAGTAGAGGGGAACGGG
* * ** * * * **
21043560 TCGATCTCCGGCTTATGCATTCTGCCTCTTCAATCGGCTAAGCGCCCGCACGCCCATTTTGTGGG
1 TCGATC-CCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* *
21043625 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGTA
65 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCA
* *
21043690 GGATCGACAGCAAGTAGGGGGGACCGGG
130 GGATCGACAGCAAGTAGAGGGGAACGGG
* * * ** *
21043718 TCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGTACCCGCACACTCGTTTCATGGG
1 TCGATCCC-GGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
21043783 TTGGCTTAGGCATACGGAGTTCATTCC
65 TTGGCTTAGGCATACGGAGTTCATTCC
21043810 ATGCCTAAGC
Statistics
Matches: 206, Mismatches: 42, Indels: 4
0.82 0.17 0.02
Matches are distributed among these distances:
157 3 0.01
158 203 0.99
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (157 bp):
TCGATCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAG
GATCGACAGCAAGTAGAGGGGAACGGG
Found at i:21043822 original size:26 final size:26
Alignment explanation
Indices: 21043792--21043861 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
21043782 GTTGGCTTAG
21043792 GCATACGGAGTTCATTCCATGCCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
21043818 GCATACGGAGTTCATTCCATGCCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
*
21043844 GCATATGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
21043862 CAATCTAAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:21044003 original size:211 final size:210
Alignment explanation
Indices: 21043634--21044019 Score: 549
Period size: 211 Copynumber: 1.8 Consensus size: 210
21043624 GTTGGCTTAG
* *
21043634 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGACAGTAGGATCGACA
* * * * * ** *
21043699 GCAAGTAGGGGGGACCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGTACC
66 GCAAGCAGGGGGGACCGGGTCAATCCCCGACTTACGCATTCTACCTCTCCGACCGACTGAGCACC
*
21043764 CGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACGGAGT
131 CGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACGGAGT
21043829 TCATTCCATGCCTAA
196 TCATTCCATGCCTAA
* * * *
21043844 GCATATGGAGTTCATTCCCAATCTAAGATCGGAATCGGACCGAGGGTTGC-AGCAGTAGGATCGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGG-ACCAGACCGAGGGTTGCGA-CAGTAGGATCGA
* * * *
21043908 CAGCACGCAGGGGGGATCGGGTCAATCCCCGATTTACGCATTCTACCTCTCCGACCGGCTGAGCA
64 CAGCAAGCAGGGGGGACCGGGTCAATCCCCGACTTACGCATTCTACCTCTCCGACCGACTGAGCA
** *
21043973 CCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTTATTC
129 CCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
21044020 TGTGTCTAAG
Statistics
Matches: 152, Mismatches: 22, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
210 31 0.20
211 121 0.80
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (210 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGACAGTAGGATCGACA
GCAAGCAGGGGGGACCGGGTCAATCCCCGACTTACGCATTCTACCTCTCCGACCGACTGAGCACC
CGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACGGAGT
TCATTCCATGCCTAA
Found at i:21044222 original size:26 final size:25
Alignment explanation
Indices: 21044187--21044238 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
21044177 GTTGACTTAG
21044187 GCATCGGAGTTCATCCCCAGTCTAA
1 GCATCGGAGTTCATCCCCAGTCTAA
* *
21044212 GCATACGGAGTTCATTCTCAGTCTAA
1 GCAT-CGGAGTTCATCCCCAGTCTAA
21044238 G
1 G
21044239 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATCGGAGTTCATCCCCAGTCTAA
Found at i:21044574 original size:159 final size:158
Alignment explanation
Indices: 21044212--21044598 Score: 377
Period size: 159 Copynumber: 2.4 Consensus size: 158
21044202 CCCAGTCTAA
* * * * *
21044212 GCATACGGAGTTCATTCTCAGTCTAAGATCAGATCGGACTGAGGGTTGCGACAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGACCGGCA
* * * **
21044277 GCACGTAAGGGGGACTGGGCCGATCCCCTGCTTGCGCACTCTGCCTCTCTGGCCGGCTGAGTGCC
66 GCACGTAAGGGGGACTGGGCCGATCCCCTGCTTGCGCACTATGCCTCTCTGGCCGACTCAGCCCC
** * *
21044342 CGTACGCCCGTTTCGTAGGTTGGCTTAG
131 CAAACGCCCGTTTCGTAGGTTGACATAG
* * * ** * * * *
21044370 GCATAGGGAGCTCATT-CCATGTTTAAGCCCTAG-CCAGACCGAGGGTTGGGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGATCGGACCGAGGGTTGCGGCAGCAGGACCGG
* * *
21044433 CAGCACGTAGAGGGGGACCT-GGCCGATCCCC-GACTTGCGTATTATGCCTCTCTGGCTGACTCA
64 CAGCACGTA-AGGGGGA-CTGGGCCGATCCCCTG-CTTGCGCACTATGCCTCTCTGGCCGACTCA
* * *
21044496 GCCCCCAAATGCTCGTTTCGTGGGTTGACATAG
126 GCCCCCAAACGCCCGTTTCGTAGGTTGACATAG
* * * * * * *
21044529 GCATATGGAGTTTATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGACCGGCA
21044594 GCACG
66 GCACG
21044599 CGGGGGGGAC
Statistics
Matches: 178, Mismatches: 44, Indels: 13
0.76 0.19 0.06
Matches are distributed among these distances:
157 2 0.01
158 54 0.30
159 117 0.66
160 5 0.03
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGACCGGCA
GCACGTAAGGGGGACTGGGCCGATCCCCTGCTTGCGCACTATGCCTCTCTGGCCGACTCAGCCCC
CAAACGCCCGTTTCGTAGGTTGACATAG
Found at i:21044723 original size:26 final size:26
Alignment explanation
Indices: 21044689--21044739 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21044679 TGGCTTAGGA
*
21044689 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
21044715 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
21044740 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:21045224 original size:159 final size:158
Alignment explanation
Indices: 21045002--21045583 Score: 663
Period size: 159 Copynumber: 3.7 Consensus size: 158
21044992 CAGGAAGGAC
* * *
21045002 CGGGTCGATCC-CTGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGC-CTGTTT
1 CGGGTCGATCCTC-GACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTC-GTTT
* * *
21045065 CGTGGGTTGGCTTAGGCCTAGGGAGTTCATTCCATGTGTAAGCCCCAGCCAGACCGAGGGTTGTG
64 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTG
*
21045130 GCAGCGGGACCGGCAGCACGTAGAGGGGGAT
129 GCAGCGGGATCGGCAGCACG-AGAGGGGGAT
* * * *
21045161 CGGGTCGATCCTCGGCTTGCGCATTCTGTCTCTCTGGCCGGCTGAGCACCCGCACACTCGTTTCG
1 CGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCG
* *
21045226 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGC
66 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGC
*
21045291 AACGGGATCGGCAGCACGCAGAGGGGGAT
131 AGCGGGATCGGCAGCACG-AGAGGGGGAT
* * * * * * *
21045320 CGGGTCGATCCTCGACTTGCGCATTATGCCTTTCCGGCTGGCTCAGCACTCGAACGCTCGTTTCA
1 CGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCG
* * ** * * * *
21045385 TGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAG-ATCGGACTGGACCGAGGGCTGCG
66 TGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTG
* ** *
21045448 GTAGTAGGATCGACAGCACGAG-GGGCGGAT
129 GCAGCGGGATCGGCAGCACGAGAGGG-GGAT
* * * * * * * *
21045478 CGGGTCGGTCCCCAACTTGCGCATTCTACCTCTTCGGCCGACTGAG-AGCCCGTACGCTCATTTC
1 CGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCA-CCCGCACGCTCGTTTC
* *
21045542 GTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGC
65 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
21045584 ATACGGAGTT
Statistics
Matches: 359, Mismatches: 56, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
157 6 0.02
158 90 0.25
159 258 0.72
160 5 0.01
ACGTcount: A:0.16, C:0.28, G:0.32, T:0.24
Consensus pattern (158 bp):
CGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCG
TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGC
AGCGGGATCGGCAGCACGAGAGGGGGAT
Found at i:21045504 original size:869 final size:869
Alignment explanation
Indices: 21044272--21045851 Score: 2240
Period size: 869 Copynumber: 1.8 Consensus size: 869
21044262 ACAGTAGGAT
*
21044272 CGGCAGCACGTAAGGGGGACTGGGCCGATCCCCTGCTTGCGCACTCTGCCTCTCTGGCCGGCTGA
1 CGGCAGCACGTAAGGGGGACTGGGCCGATCCCCGGCTTGCGCACTCTGCCTCTCTGGCCGGCTGA
** * * *
21044337 GTGCCCGTACGCCCGTTTCGTAGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTTTAAGCCCTA
66 GCACCCGCACACCCGTTTCGTAGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCTA
* * *
21044402 GCCAGACCGAGGGTTGGGGCAGCGGGACCGGCAGCACGTAGAGGGGGACCTGGCCGATCCCCGAC
131 GCCAGACCGAGGGTTGGGGCAACGGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGAC
* * * * *
21044467 TTGCGTATTATGCCTCTCTGGCTGACTCAGCCCCCAAATGCTCGTTTCGTGGGTTGACATAGGCA
196 TTGCGCATTATGCCTCTCCGGCTGACTCAGCACCCAAACGCTCGTTTCATGGGTTGACATAGGCA
* *
21044532 TATGGAGTTTATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGGCAGTAGGATCGACAGCA
261 TATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGCTGCGGCAGTAGGATCGACAGCA
* * * ** * * * * * *
21044597 CGCGGGGGGGACTGAGACGGTCCTCGGCTTGTGCATTCTGCCT-TTCCGACTGGCTGAGTGCCTA
326 CGAGGGGCGGACTGAGACGGTCCCCAACTTGCGCATTCTACCTCTT-CGACCGACTGAGAGCCCA
21044661 TACGCTCATTTCATGGGTTGGCTTAGGAATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTC
390 TACGCTCATTTCATGGGTTGGCTTAGGAATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTC
* * *
21044726 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGATAGCAGGACCAGTAGCAGGATTGACAG
455 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGACCAGTAGCAGGATCGACAG
* * * * ** *
21044791 CATGC-GTGGGAGGATCGGGTCGATCCTCGACTTGCACATTCTGCCTCTTTGGCCGGCCTCTCC-
520 CACGCAG-GGGAGGACCAGGCCGATCCTCGACTTGCACATTCTGCCTCTCCGGCCAGCCTCTCCA
* * * *
21044854 AGTCGGTTCAGCGCCCGTACGCTCCTTTCGTGGGTTGACTTAGGCATA-AGAGTTCAT-CCCCAG
584 ACT-GGCTCAGCGCCCGCACACTCCTTTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCCCA-
* * *
21044917 TCTAAGCTTACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTTCGACAGCAGGAT
647 TCTAAGCTTACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGAT
21044982 TGGCAGCACGCAGGAAGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGA
712 TGGCAGCACGCAGGAAGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGA
21045047 GCGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCCTAGGGAGTTCATTCCATGTGTAAGCCCCA
777 GCGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCCTAGGGAGTTCATTCCATGTGTAAGCCCCA
21045112 GCCAGACCGAGGGTTGTGGCAGCGGGAC
842 GCCAGACCGAGGGTTGTGGCAGCGGGAC
* * * *
21045140 CGGCAGCACGTAGAGGGGGA-TCGGGTCGATCCTCGGCTTGCGCATTCTGTCTCTCTGGCCGGCT
1 CGGCAGCACGTA-AGGGGGACT-GGGCCGATCCCCGGCTTGCGCACTCTGCCTCTCTGGCCGGCT
* * *
21045204 GAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
64 GAGCACCCGCACACCCGTTTCGTAGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCC
* * * * * * *
21045269 TAGTCGGACCGAGGGTTGTGGCAACGGGATCGGCAGCACGCAGAGGGGGATCGGGTCGATCCTCG
129 TAGCCAGACCGAGGGTTGGGGCAACGGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCG
* * * * *
21045334 ACTTGCGCATTATGCCTTTCCGGCTGGCTCAGCACTCGAACGCTCGTTTCATGGGTTGACTTAGG
194 ACTTGCGCATTATGCCTCTCCGGCTGACTCAGCACCCAAACGCTCGTTTCATGGGTTGACATAGG
* *
21045399 CATATGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGCTGCGGTAGTAGGATCGACA
259 CATATGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCAAGGGCTGCGGCAGTAGGATCGACA
* * *
21045463 GCACGAGGGGCGGA-TCGGGTCGGTCCCCAACTTGCGCATTCTACCTCTTCGGCCGACTGAGAGC
323 GCACGAGGGGCGGACT-GAGACGGTCCCCAACTTGCGCATTCTACCTCTTCGACCGACTGAGAGC
* * * * *
21045527 CCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCATACGGAG
387 CCATACGCTCATTTCATGGGTTGGCTTAGGAATACGGAGTTCATTCCATGTCTAAGCATACAGAG
* * * *
21045592 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGACCAGTAGTAGGATCGG
452 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGACCAGTAGCAGGATCGA
* * *
21045657 TAGCACGCAGGGGGGGACCAGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCAGCCTCTC
517 CAGCACGCAGGGGAGGACCAGGCCGATCCTCGACTTGCACATTCTGCCTCTCCGGCCAGCCTCTC
* * * * *
21045722 CAACTGGCTGAGCGCTCGCACACTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATCCCCCA
582 CAACTGGCTCAGCGCCCGCACACTCCTTTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCCCA
* * *
21045787 TCTAAGCTTACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGTAGGAT
647 TCTAAGCTTACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGAT
21045852 CGACAGAATG
Statistics
Matches: 615, Mismatches: 88, Indels: 16
0.86 0.12 0.02
Matches are distributed among these distances:
868 15 0.02
869 523 0.85
870 72 0.12
871 5 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (869 bp):
CGGCAGCACGTAAGGGGGACTGGGCCGATCCCCGGCTTGCGCACTCTGCCTCTCTGGCCGGCTGA
GCACCCGCACACCCGTTTCGTAGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCTA
GCCAGACCGAGGGTTGGGGCAACGGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGAC
TTGCGCATTATGCCTCTCCGGCTGACTCAGCACCCAAACGCTCGTTTCATGGGTTGACATAGGCA
TATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGCTGCGGCAGTAGGATCGACAGCA
CGAGGGGCGGACTGAGACGGTCCCCAACTTGCGCATTCTACCTCTTCGACCGACTGAGAGCCCAT
ACGCTCATTTCATGGGTTGGCTTAGGAATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCA
TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGACCAGTAGCAGGATCGACAGC
ACGCAGGGGAGGACCAGGCCGATCCTCGACTTGCACATTCTGCCTCTCCGGCCAGCCTCTCCAAC
TGGCTCAGCGCCCGCACACTCCTTTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCCCATCTA
AGCTTACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATTGGC
AGCACGCAGGAAGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGC
CCGCACGCCTGTTTCGTGGGTTGGCTTAGGCCTAGGGAGTTCATTCCATGTGTAAGCCCCAGCCA
GACCGAGGGTTGTGGCAGCGGGAC
Found at i:21045605 original size:26 final size:26
Alignment explanation
Indices: 21045556--21045608 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21045546 GTTGGCTTAG
*
21045556 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
21045582 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
21045608 G
1 G
21045609 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:21046119 original size:26 final size:26
Alignment explanation
Indices: 21046072--21046124 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21046062 GTTGACTTAG
*
21046072 GCATACGGAGTTCATCGCCAATCTAA
1 GCATACGGAGTTCATCGACAATCTAA
21046098 GCATACGGAGTTCATTC-ACAATCTAA
1 GCATACGGAGTTCA-TCGACAATCTAA
21046124 G
1 G
21046125 ATTGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCGACAATCTAA
Found at i:21046568 original size:158 final size:154
Alignment explanation
Indices: 21046296--21046751 Score: 521
Period size: 158 Copynumber: 2.9 Consensus size: 154
21046286 CCAGTCTGAC
* * * *
21046296 CGAGGGTTGTGGCAGCGAGACCT-ACAGCACGCAGAGGGGGATCGGGCCAATCCCCGGCTTGCGC
1 CGAGGGTTGTGGCAGCAAGA-TTGACAGCA--CA-AGGGGGATCGAGCCAATCCCTGGCTTGCGC
* * *
21046360 ATTATGCCTTTTCGGCTGGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
62 ATTATGCC-TCTCGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GA
*
21046425 GTTTATTCCCAGTCTAAGATCAAACCGGAT
125 GTTCATTCCCAGTCTAAGATCAAACCGGAT
* * *
21046455 TGAGGGTTGTGGCAGCAAGATTGACAGCACATAGGGAGGATCGAGCCGATCCCTGGCTTGTGCAT
1 CGAGGGTTGTGGCAGCAAGATTGACAGCACA-AGGG-GGATCGAGCCAATCCCTGGCTTGCGCAT
* *
21046520 TCTGCCTCTCGGGCCGACTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGT
64 TATGCCTCTC-GGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG-AGT
* * * *
21046585 TCATTCCTAGTCTAAGATCAGATCGTAT
127 TCATTCCCAGTCTAAGATCAAACCGGAT
* * * *
21046613 CGAGGGTTGTGGCAGCAGGATTGACAG----AGGGGAAGCGAGCCAAT-CCTCGGCTTACGCATT
1 CGAGGGTTGTGGCAGCAAGATTGACAGCACAAGGGGGATCGAGCCAATCCCT-GGCTTGCGCATT
* * *
21046673 TTGCCTCTCCGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
65 ATGCCTCT-CGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTT
21046738 CATT-CCATGTCTAA
128 CATTCCCA-GTCTAA
21046752 CCATACGGAG
Statistics
Matches: 259, Mismatches: 30, Indels: 23
0.83 0.10 0.07
Matches are distributed among these distances:
151 5 0.02
152 87 0.34
153 6 0.02
157 10 0.04
158 127 0.49
159 24 0.09
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (154 bp):
CGAGGGTTGTGGCAGCAAGATTGACAGCACAAGGGGGATCGAGCCAATCCCTGGCTTGCGCATTA
TGCCTCTCGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCAT
TCCCAGTCTAAGATCAAACCGGAT
Found at i:21046763 original size:26 final size:26
Alignment explanation
Indices: 21046727--21046777 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21046717 TTGGCTTAGG
21046727 CATACGGAGTTCATT-CCATGTCTAAC
1 CATACGGAGTTCATTCCCA-GTCTAAC
21046753 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
21046778 GATCGGATCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:21047136 original size:26 final size:26
Alignment explanation
Indices: 21047107--21047159 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21047097 GTTCACTTAG
21047107 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21047133 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21047159 G
1 G
21047160 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21047295 original size:182 final size:186
Alignment explanation
Indices: 21047057--21047504 Score: 568
Period size: 182 Copynumber: 2.4 Consensus size: 186
21047047 CTTCGATCAG
* * * *
21047057 CCTCTCT-AGCCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCA
1 CCTCTCTGA-CCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* *
21047121 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT-C-GGACCGAGGGTTGCGA
65 TCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGATACTGGACCGAAGGTTGCGA
* * * *
21047184 CAGCAGGAACGATAGCACG-TGG-GGGACCG-GGTCGATCGT-CGGCTTGCGCATTCTG
130 CAGCAGGAACGACAGCACGCAGGAGGGACCGAGCT-GATC-TCCGGCTTGCGCATTCTA
* * * *
21047239 CCTCTTTGACTGGCTGAGCACCCGCACGCTCGTTTCATGTGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCTGACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
*
21047304 CCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGGATCGAAGGTTGC
66 CCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGAT---ACTGGACCGAAGGTTGC
* * *
21047369 GGCAGCAGGATCGACAGCACGCAGGAGGGACCGAGCTGATCTCCGGCTTGCGTATTCTA
128 GACAGCAGGAACGACAGCACGCAGGAGGGACCGAGCTGATCTCCGGCTTGCGCATTCTA
* * * * *
21047428 CCTCTCTGACCGACTGAGCACCAGCACACCCGTTTCTTGGGTTGACTTAGGCATACAGAGTTCAT
1 CCTCTCTGACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* *
21047493 TCCCTGTCTAAG
66 CCCCAGTCTAAG
21047505 ATTGGACCAG
Statistics
Matches: 227, Mismatches: 29, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
182 99 0.44
183 1 0.00
186 1 0.00
187 30 0.13
188 3 0.01
189 91 0.40
190 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (186 bp):
CCTCTCTGACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
CCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGATACTGGACCGAAGGTTGCGAC
AGCAGGAACGACAGCACGCAGGAGGGACCGAGCTGATCTCCGGCTTGCGCATTCTA
Found at i:21047319 original size:26 final size:26
Alignment explanation
Indices: 21047289--21047341 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21047279 GTTGACTTAG
*
21047289 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
*
21047315 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
21047341 G
1 G
21047342 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:21047504 original size:189 final size:182
Alignment explanation
Indices: 21047087--21047504 Score: 534
Period size: 189 Copynumber: 2.3 Consensus size: 182
21047077 CCCGTACGCT
* * *
21047087 CGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
1 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCC
* * * *
21047152 AGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGAACGATAGCACGTGGGGGACCGGGTC
66 AGTCTAAGATCGGATCGGACCGAAGGTTGCGACAGCAGGAACGACAGCACGAGGGGGACCGGCTC
* * * * * * *
21047217 GATCGTCGGCTTGCGCATTCTGCCTCTTTGACTGGCTGAGCACCCGCACGCT
131 GATCGTCGGCTTGCGCATTCTACCTCTCTGACCGACTGAGCACCAGCACACC
*
21047269 CGTTTCATGTGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCC
1 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCC
* * *
21047334 AGTCTAAGATCGGATCAGACTGGATCGAAGGTTGCGGCAGCAGGATCGACAGCACGCAGGAGGGA
66 AGTCTAAGATCGGAT----C-GGACCGAAGGTTGCGACAGCAGGAACGACAGCACG-AGG-GGGA
*
21047399 CCGAGCT-GATC-TCCGGCTTGCGTATTCTACCTCTCTGACCGACTGAGCACCAGCACACC
124 CCG-GCTCGATCGT-CGGCTTGCGCATTCTACCTCTCTGACCGACTGAGCACCAGCACACC
* * * *
21047458 CGTTTCTTGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAAG
1 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
21047505 ATTGGACCAG
Statistics
Matches: 203, Mismatches: 24, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
182 76 0.37
186 1 0.00
187 30 0.15
188 3 0.01
189 91 0.45
190 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (182 bp):
CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCC
AGTCTAAGATCGGATCGGACCGAAGGTTGCGACAGCAGGAACGACAGCACGAGGGGGACCGGCTC
GATCGTCGGCTTGCGCATTCTACCTCTCTGACCGACTGAGCACCAGCACACC
Found at i:21047849 original size:26 final size:26
Alignment explanation
Indices: 21047819--21047870 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21047809 GTTGACTTAG
21047819 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21047845 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21047871 AATCAGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21048209 original size:159 final size:158
Alignment explanation
Indices: 21047845--21048210 Score: 373
Period size: 159 Copynumber: 2.3 Consensus size: 158
21047835 CCCAGTCTAA
* * * * * **
21047845 GCATATGGAGTTCATTCCCAGTCTAAAATCAGATCGGA-TCGAGTGTTGCGACAGCAAGATTGGT
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGACAGCAAGATCGAC
* * * *
21047909 AGCACACAGGAGGGATCGGGCCAATCCCCAGCTTTCTCATTCTGCGTCTCTGGCCAGTTGAGCAC
65 AGCACACAGGAGGGATCGGGCCAATCCCCAGCTTTCTCATTATGCCTCTCCGGCCAGTTCAGCAC
* * * *
21047974 CCGCATGCCCATTTCGTGGGTTGGCTTAG
130 CCACACGCCCATTTCATGGGTTGACTTAG
* ** * * * * **
21048003 GCATAAGGAGTTCATT-TCATGTCTAAGCCCTAG-CTGGACCGAGGGTTGTGGCAGCGGGATCGA
1 GCATAAGGAGTTCATTCCCA-GTCTAAGATC-AGACCGGACTGAGGGTTGCGACAGCAAGATCGA
* * * *
21048066 CAGCACGCAGAGGGGGATTGGGCCGATCCCCAGCTTTCGT-ATTATGCCTCTCCGGCCAGTTCAG
64 CAGCACACAG-GAGGGATCGGGCCAATCCCCAGCTTTC-TCATTATGCCTCTCCGGCCAGTTCAG
**
21048130 CACCCACACGCTTATTTCATGGGTTGACTTAG
127 CACCCACACGCCCATTTCATGGGTTGACTTAG
21048162 GCATACA-GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGC
1 GCATA-AGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGC
21048211 AGCAGTAGGA
Statistics
Matches: 164, Mismatches: 36, Indels: 15
0.76 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 51 0.31
159 107 0.65
160 4 0.02
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (158 bp):
GCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAAGATCGACA
GCACACAGGAGGGATCGGGCCAATCCCCAGCTTTCTCATTATGCCTCTCCGGCCAGTTCAGCACC
CACACGCCCATTTCATGGGTTGACTTAG
Found at i:21048358 original size:159 final size:158
Alignment explanation
Indices: 21047911--21048429 Score: 379
Period size: 159 Copynumber: 3.3 Consensus size: 158
21047901 AGATTGGTAG
* * * * * * * * * *
21047911 CACACAG-GAGGGATCGGGCCAATCCCCAGCTTTCTCATTCTGCGTCTCTGGCCAGTTGAGCACC
1 CACACAGAGGGGGATCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGCACC
* * * * * * *
21047975 CGCATGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTTCATGTCTAAGCCCTAGCTGG
66 CACACGCTCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
** *
21048040 ACCGAGGGTTGTGGCAGCGGGATCGACA
131 ACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * * *
21048068 GCACGCAGAGGGGGATTGGGCCGATCCCCAGCTTTCGTATTATGCCTCTCCGGCCAGTTCAGCAC
1 -CACACAGAGGGGGATCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGCAC
* * **
21048133 CCACACGCTTATTTCATGGGTTGACTTAGGCATACA-GAGTTCATTCCCA-GTCTAAG-ATCAGA
65 CCACACGCTCATTTCATGGGTTGGCTTAGGCATA-AGGAGTTCATT-CCATGTCTAAGCCCCAG-
* * *
21048195 CCGGACTGAGGGTTGCAGCAGTAGGATTGACA
127 CCGGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * *
21048227 -ACACATAGGGCAGGATCGAGTCGATCCCC-GACTTGCGCATTTTGCCTCTCCGGCC-GACTGAG
1 CACACAGAGGG--GGATCGAGCCGATCCCCAG-CTTGCGCATTATGCCTCTCCGGCCAG-CTCAG
* ** * ** * *
21048289 CGCCCGTACGCTCGTTTTGTGTGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAG
62 CACCCACACGCTCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAG
*
21048354 CCGGACC---GG-T--AGC-G--GGATCGTCA
127 CCGGACCGAGGGTTGCAGCAGCAGGATCGACA
* * **
21048377 GCACACAGAAGGGGATCGGGTTGATCCCC-GACTTGCGCATTATGCCTCTCCGG
1 -CACACAGAGGGGGATCGAGCCGATCCCCAG-CTTGCGCATTATGCCTCTCCGG
21048430 TTGGCATCTC
Statistics
Matches: 291, Mismatches: 57, Indels: 34
0.76 0.15 0.09
Matches are distributed among these distances:
150 45 0.15
152 9 0.03
153 3 0.01
155 1 0.00
156 2 0.01
157 8 0.03
158 13 0.04
159 204 0.70
160 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
CACACAGAGGGGGATCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGCACC
CACACGCTCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
ACCGAGGGTTGCAGCAGCAGGATCGACA
Found at i:21048519 original size:26 final size:26
Alignment explanation
Indices: 21048485--21048535 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21048475 TTGACTTAGG
*
21048485 CATATGGAGTTCATCCCCAGTCTAAT
1 CATACGGAGTTCATCCCCAGTCTAAT
*
21048511 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
21048536 AATCAGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAT
Found at i:21049374 original size:26 final size:26
Alignment explanation
Indices: 21049338--21049390 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21049328 GTTGGCTATG
21049338 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21049364 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21049390 G
1 G
21049391 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21049866 original size:159 final size:158
Alignment explanation
Indices: 21049600--21049897 Score: 366
Period size: 159 Copynumber: 1.9 Consensus size: 158
21049590 CAAACTGGAT
* * * * *
21049600 TGAGGGTTGTGGCAGCAGGATCGAGAGCACGCAGGGGGGACTGGGCCGATCCTCGACTTGCACAT
1 TGAGGGTTGTGACAGCAGGATCCAGAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCACAT
* * * * * **
21049665 TCTGCCTTTTCGATCAACTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
66 TCTGCCTCTCCGATCAACTGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATACAGAGT
21049730 TCAGTCCATGTCGAAGCCCCAGTCGGAC
131 TCAGTCCATGTCGAAGCCCCAGTCGGAC
* *
21049758 TGAGGGTTGTGACAGCGGGA-CCAGCAGCATGCATAGGGGGACCGGGCCGATCCCCGACTTGCAC
1 TGAGGGTTGTGACAGCAGGATCCAG-AGCACGCA-AGGGGGACCGGGCCGATCCCCGACTTGCAC
* * ** * *
21049822 ATTTTGCCTCTCCGGT-AGTTTGAGCGCCTGCACACTCATTTCGTGGGTTGGCTTAGGCATACAG
64 ATTCTGCCTCTCCGATCA-ACTGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATACAG
*
21049886 AGTTCATTCCAT
128 AGTTCAGTCCAT
21049898 ATCTAATCAT
Statistics
Matches: 116, Mismatches: 21, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
157 3 0.03
158 26 0.22
159 87 0.75
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (158 bp):
TGAGGGTTGTGACAGCAGGATCCAGAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCACAT
TCTGCCTCTCCGATCAACTGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATACAGAGT
TCAGTCCATGTCGAAGCCCCAGTCGGAC
Done.