Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 200 of 402
Found at i:21049927 original size:26 final size:26
Alignment explanation
Indices: 21049879--21049929 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
21049869 TTGGCTTAGG
*
21049879 CATACAGAGTTCATTCCATATCTAAT
1 CATACAGAGTTCATCCCATATCTAAT
*
21049905 CATACGGAGTTCAATCCCA-ATCTAA
1 CATACAGAGTTC-ATCCCATATCTAA
21049930 GAGTTTGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATCCCATATCTAAT
Found at i:21050625 original size:26 final size:26
Alignment explanation
Indices: 21050574--21050626 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21050564 TGGGTTGACT
*
21050574 TAAGCATACCGAGTTTATCCCTAGTC
1 TAAGCATACCGAGTTCATCCCTAGTC
**
21050600 TAAGCATATGGAGTTCATTCCC-AGTC
1 TAAGCATACCGAGTTCA-TCCCTAGTC
21050626 T
1 T
21050627 GAGATCAGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (26 bp):
TAAGCATACCGAGTTCATCCCTAGTC
Found at i:21051136 original size:157 final size:156
Alignment explanation
Indices: 21050635--21051144 Score: 441
Period size: 157 Copynumber: 3.2 Consensus size: 156
21050625 CTGAGATCAG
* ** * * * * *
21050635 ACCGGACTGAGGGTTGCAGCAGTAGGATCGACAGCACGCAGGGTGGACCGGGCCAAACCCCAGCT
1 ACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAG-GGACCGGGCCGATCCCGA-CT
* * * * * * *
21050700 TGTGCATTCTACCTTTTCGGCCGATTGAGTGCCCGCACGC-CCGTTTCATGGGTTGGCTTAGGCA
64 TGTGCATTCTACCTCTCCGACCGACTGAGAGCCCGAATGCTCC-TTTCATGGGTTGGCTTAGGCA
*
21050764 TAGGGAGTTCATTCCATGTCTAAGCCCCA
128 TACGGAGTTCATTCCATGTCTAAGCCCCA
*** * * ** * *
21050793 GTTGGACAGAGGGTTGTGGCAGCGGGA-CTGGTAGCACGCAGAGGGGGACCGAGCCGATCCCCGG
1 ACCGGACCGAGGGTTGTGGCAGCAGGATC-GACAGCACGCAGA--GGGACCGGGCCGAT-CCCGA
** * * * * * * * * * *
21050857 CTTGCACATTATTCCTCTCTGACCGGCTCAAAGCTCGAATGCTCATTTCGTGGGTTGACTTAGGC
62 CTTGTGCATTCTACCTCTCCGACCGACTGAGAGCCCGAATGCTCCTTTCATGGGTTGGCTTAGGC
** **
21050922 ATACGGAGTTCATTCACA-GTCTAAGATCGG
127 ATACGGAGTTCATTC-CATGTCTAAGCCCCA
* * * *
21050952 ACCGGACCAAGGGTTGTGGTAGCAGGATCGACAGCACGCAGAGGGACCGGGTCGGTCCCTGACTT
1 ACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGACCGGGCCGATCCC-GACTT
* * * * *
21051017 GTGCATTCTGCCTCTCCGACTGACTGAGCGCCCGTATGCTCCTTTCATGGGCTGGCTTAGGCATA
65 GTGCATTCTACCTCTCCGACCGACTGAGAGCCCGAATGCTCCTTTCATGGGTTGGCTTAGGCATA
21051082 CGGAGTTCATTCCATGTCTAAGCCCCA
130 CGGAGTTCATTCCATGTCTAAGCCCCA
** *
21051109 ACCGGACCGAGGGTTGTGGCAATAGGATCGGCAGCA
1 ACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCA
21051145 GGATCGGTAG
Statistics
Matches: 265, Mismatches: 78, Indels: 19
0.73 0.22 0.05
Matches are distributed among these distances:
156 5 0.02
157 116 0.44
158 29 0.11
159 107 0.40
160 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (156 bp):
ACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGACCGGGCCGATCCCGACTTG
TGCATTCTACCTCTCCGACCGACTGAGAGCCCGAATGCTCCTTTCATGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCCCCA
Found at i:21051491 original size:26 final size:26
Alignment explanation
Indices: 21051454--21051506 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21051444 GTTGACTTAG
21051454 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
21051480 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21051506 G
1 G
21051507 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21051826 original size:26 final size:26
Alignment explanation
Indices: 21051796--21051848 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21051786 GTTGACTTAG
21051796 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
21051822 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21051848 G
1 G
21051849 ATCTAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21051953 original size:184 final size:185
Alignment explanation
Indices: 21051673--21052007 Score: 426
Period size: 184 Copynumber: 1.8 Consensus size: 185
21051663 AGCCCCAGCC
* * * * *
21051673 GACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGTGACCAGGCTAATCCTCAGCTTGC
1 GACCAAGGGTTGTGACAGCAGGATCGGCAACACGCAGAGGGGGACCAGGCTAATCCCCAGCTTGC
* * * * *
21051738 GCATTATGCCTCTCCGGTCGGCTATGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACG
66 GCATTATACCTCTCCGGTCGACAAAGCGCCCGAACGCCCGTTTCATGGGTTGACTTAGGCATACG
21051803 GAGTTCATCCC-TAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCTAACTG
131 GAGTTCATCCCAT-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCTAACTG
* * * *
21051858 GACCGAGGGTTGTGACAGCAGGATCGGCAACATGCA-AGGGGGGCCAGG-TCGATCCCCAGCTTG
1 GACCAAGGGTTGTGACAGCAGGATCGGCAACACGCAGAGGGGGACCAGGCT-AATCCCCAGCTTG
* * * * * *
21051921 CGCATTTTACCTCTCCGG-CTGACAAAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGTCATA
65 CGCATTATACCTCTCCGGTC-GACAAAGCGCCCGAACGCCCGTTTCATGGGTTGACTTAGGCATA
*
21051985 CGGAGTTCATTCCATGTCTAAGC
129 CGGAGTTCATCCCATGTCTAAGC
21052008 CCTAGCCAAA
Statistics
Matches: 126, Mismatches: 21, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
183 2 0.02
184 92 0.73
185 32 0.25
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (185 bp):
GACCAAGGGTTGTGACAGCAGGATCGGCAACACGCAGAGGGGGACCAGGCTAATCCCCAGCTTGC
GCATTATACCTCTCCGGTCGACAAAGCGCCCGAACGCCCGTTTCATGGGTTGACTTAGGCATACG
GAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCTAACTG
Found at i:21052179 original size:26 final size:26
Alignment explanation
Indices: 21052150--21052202 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21052140 GTTGACTTAG
21052150 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
21052176 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21052202 G
1 G
21052203 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21052200 original size:354 final size:344
Alignment explanation
Indices: 21051414--21052518 Score: 1157
Period size: 342 Copynumber: 3.2 Consensus size: 344
21051404 CCCTCCCGGT
* * * *
21051414 CGGTTGAGCACCCGCACGTTCCTTCCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTA
1 CGGTTGAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTA
* * * * *
21051479 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCAAGGGTTAT-AGCAGCAGGATCGA
66 AGCATACGGAGTTCATTCCCAGTCTAAGATC-AATCGGACCGAGGGTTGTGA-CAGCAGGATCGG
** * * * * *
21051543 TAGCACGCAGGAGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCTGGTCGGCTGAGCA
129 TAGCACGCAGG-GGGGCCAGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCG
* * *
21051608 CCCGCACACCAGTTTCATTTATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
193 CCCGCACACCCGTTTCGTTTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * *
21051673 GACCAAGGGTTGT-G--GC-AGCAGGATCGGCAGCACGTAGAGGGTGACCAGGCTAATCCTCAGC
258 GACCGAGGGTTGTGGCAGCAAGCAGGATCGGCAGCACGCAGAGGGGGACCAGGCTAATCCTCAGC
* *
21051734 TTGCGCATTATGCCTCTCCGGT
323 TTGCGCATTATGCCTCTCCAGC
* * * * * *
21051756 CGGCT-ATGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCT
1 CGGTTGA-GCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCT
21051820 AAGCATACGGAGTTCATTCCCAGTCTAAGATCTAA-CTGGACCGAGGGTTGTGACAGCAGGATCG
65 AAGCATACGGAGTTCATTCCCAGTCTAAGATC-AATC-GGACCGAGGGTTGTGACAGCAGGATCG
* * * * * * * **
21051884 GCAACATGCAAGGGGGGCCAGGTCGATCCCCAGCTTGCGCATTTTACCTCTCCGG-CTGACAAAG
128 GTAGCACGC-AGGGGGGCCAGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTC-GGCTGAG
** ** * * *
21051948 CGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAAGCCCTAG
191 CGCCCGCACACCCGTTTCGTTTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* * *
21052013 CCAAACCGAGGGTTGTGGCAGCAGGACCGACAGTGGGATCGGCAGCACGCAGAGGGGGA-CTGGG
256 CC-GACCGAGGGTTGTGGCAGCA--A--G-CA---GGATCGGCAGCACGCAGAGGGGGACCAGGC
*
21052077 TAGATCC-CTGACTTGCGCATTATGCCTCT-CAGC
312 TA-ATCCTCAG-CTTGCGCATTATGCCTCTCCAGC
* *
21052110 CGGTTGAGCACCCGTACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTA
1 CGGTTGAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTA
* * * * *
21052175 AGCATACGAAGTTCATTCTCAGTCTAAGATCAGATCGGACTGAGGGTTGCGACAGCAGGATTGGT
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCA-ATCGGACCGAGGGTTGTGACAGCAGGATCGGT
* * *
21052240 AGCACGCAGGGGGGACCGAGCT-GATCCCTAGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCG
130 AGCACGCAGGGGGG-CC-AGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCG
* *
21052304 CCCGCACACCCGTTTCGTTTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGGC
193 CCCGCACACCCGTTTCGTTTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * * * ** *
21052369 GACCGAGGGTTGTGGCAGC-A--A-GATCGGTAGCATGCAGAGGGCGATCGGGCCGATCCTCGGC
258 GACCGAGGGTTGTGGCAGCAAGCAGGATCGGCAGCACGCAGAGGGGGACCAGGCTAATCCTCAGC
* *
21052430 TTGCGTATTATGCCTCTCC-GAT
323 TTGCGCATTATGCCTCTCCAG-C
* * *** * *
21052452 CGGCTCAATGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCT
1 CGGTTGAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGA-AGTTCATCCCCAGTCT
21052516 AAG
65 AAG
21052519 ATCTGATCAG
Statistics
Matches: 628, Mismatches: 104, Indels: 62
0.79 0.13 0.08
Matches are distributed among these distances:
341 46 0.07
342 268 0.43
343 15 0.02
344 1 0.00
345 1 0.00
346 2 0.00
349 1 0.00
350 1 0.00
351 1 0.00
352 2 0.00
353 26 0.04
354 214 0.34
355 50 0.08
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (344 bp):
CGGTTGAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCAATCGGACCGAGGGTTGTGACAGCAGGATCGGTA
GCACGCAGGGGGGCCAGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
GCACACCCGTTTCGTTTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAC
CGAGGGTTGTGGCAGCAAGCAGGATCGGCAGCACGCAGAGGGGGACCAGGCTAATCCTCAGCTTG
CGCATTATGCCTCTCCAGC
Found at i:21052895 original size:26 final size:26
Alignment explanation
Indices: 21052859--21052909 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
21052849 TGACTTAGGC
*
21052859 ATACGGAGTTCATCCCCAGCCTAAGG
1 ATACAGAGTTCATCCCCAGCCTAAGG
* *
21052885 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGCCTAAG
21052910 ATTGGACTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGCCTAAGG
Found at i:21053344 original size:156 final size:155
Alignment explanation
Indices: 21052885--21053376 Score: 464
Period size: 154 Copynumber: 3.2 Consensus size: 155
21052875 CAGCCTAAGG
* * * *
21052885 ATACAGAGTTCATTCCCAGTCTAAGATTGGACTAAACCGAGGGTTACGGTAACAGGATCGGTAGC
1 ATACAGAGTTCATTCCCAGTCTAA-ATTGGACTGAACCGAGGGTTGCGGTAGCAGGATCGATAGC
* * * * *
21052950 CCGCAGGGGGGATCGGGTCGATCCCCGGCTTGCACATTCTACCTCTCCGACCGGCTGAGCGCCCG
65 ACGCA-GGGGGATCGGGTCG-TTCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCG
* *
21053015 CAAGC-CTATTTCATGGGTTGGA-TCAGGC
128 CACGCTC-ATTTCATGGGTT-GACTTAGGC
** * * * *
21053043 ATAGGGAGTTCATT-CCATGTCT-AA---GACTGGACCGAGGGTTGTGGCAGC-GAGACCGATAG
1 ATACAGAGTTCATTCCCA-GTCTAAATTGGACTGAACCGAGGGTTGCGGTAGCAG-GATCGATAG
* * * * * *
21053102 CACGCAGAGGGGGATCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGACTGGCTCAGTGCC
64 CACGC--AGGGGGATCGGGTCGTTCCC-GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCC
* * * *
21053167 TGCACACTCATTTCGTAGGTTGACTTAGGC
126 CGCACGCTCATTTCATGGGTTGACTTAGGC
* * *
21053197 ATACGGAGTTCATTCCCAATCTAATATTGGACTGAACCGAGGGTTGCGGTAGCAGGATCGACAGC
1 ATACAGAGTTCATTCCCAGTCTAA-ATTGGACTGAACCGAGGGTTGCGGTAGCAGGATCGATAGC
* * * * * *
21053262 ATGCAGGGGGATCGGGTCGTTACCGGCTAGTGCATTCTGCCTC-CCCAGCCGACTGAGTGCCCGC
65 ACGCAGGGGGATCGGGTCGTTCCCGGCTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGTGCCCGC
*
21053326 ACGCTCATTTCATGGGTTGGCTTAGGC
129 ACGCTCATTTCATGGGTTGACTTAGGC
21053353 ATACAGAGTTCATT-CCATGTCTAA
1 ATACAGAGTTCATTCCCA-GTCTAA
21053377 GCCCCAGCCA
Statistics
Matches: 265, Mismatches: 53, Indels: 34
0.75 0.15 0.10
Matches are distributed among these distances:
152 1 0.00
153 34 0.13
154 78 0.29
155 12 0.05
156 71 0.27
157 20 0.08
158 16 0.06
159 32 0.12
160 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (155 bp):
ATACAGAGTTCATTCCCAGTCTAAATTGGACTGAACCGAGGGTTGCGGTAGCAGGATCGATAGCA
CGCAGGGGGATCGGGTCGTTCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCAC
GCTCATTTCATGGGTTGACTTAGGC
Found at i:21053554 original size:26 final size:26
Alignment explanation
Indices: 21053525--21053574 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
21053515 GACTTAGGCA
21053525 TACGAAGTTCATCCCCAGTCTAAGCT
1 TACGAAGTTCATCCCCAGTCTAAGCT
* *
21053551 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATCCCCAGTCTAAG
21053575 ATTGGATTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATCCCCAGTCTAAGCT
Found at i:21053976 original size:158 final size:157
Alignment explanation
Indices: 21053551--21054048 Score: 536
Period size: 158 Copynumber: 3.2 Consensus size: 157
21053541 AGTCTAAGCT
* ** * *
21053551 TACGGAGTTCATTCCCA-GTCTAAGATTGGATTGGACCGAGGGTTGCAGTAGCAGGATCGACAGG
1 TACGGAGTTCATT-CCATGTCTAAGATCGGATTGGACCGAGGGTTGTGGCAGCAGGATCGACAGC
* * * * *
21053615 ACGCAGGAGGGAATGGGCCTATCCCTGGCTTGCGTATTCTGCCTCTCCGACCAGCTGAGCACCCG
65 ACGCAGGGGGGGATGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCA-CCG
* *
21053680 CACGCCCGTTTCATGGGTTGGCTTAGGCA
129 CACGCTCGTTTCATGGGTTGACTTAGGCA
* * ** ** * * * * *
21053709 TAGGGAGTTCATTCCATGACTAAGCCCCAATCGAACTGAGGGTTGTGGCAGCGGGACCGACAGCA
1 TACGGAGTTCATTCCATGTCTAAGATCGGATTGGACCGAGGGTTGTGGCAGCAGGATCGACAGCA
* * * * * *
21053774 CGTAGAGGAGGATCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTCCGGCCTA-CTCAGCGCTC
66 CGCAGGGGGGGAT-GGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGCC-AGCTGAGCAC-C
* *
21053838 GAACGCTCGTTTCGTGGGTTGACTTAGGCA
128 GCACGCTCGTTTCATGGGTTGACTTAGGCA
* * *
21053868 TACGGAGTTCATTCCA-GTCTAAGATCGGATTGGACCAAGGTTTGTGGCAACAGGATCGACAGCA
1 TACGGAGTTCATTCCATGTCTAAGATCGGATTGGACCGAGGGTTGTGGCAGCAGGATCGACAGCA
* * * *
21053932 CGCAGGGGGGGACTGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCTGCCAGCTGAGCACCGC
66 CGCAGGGGGGGA-TGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCACCGC
*
21053997 ATGCTCGTTTCATGGGTT-AGCTTAGGCA
130 ACGCTCGTTTCATGGGTTGA-CTTAGGCA
* *
21054025 TACAGAGATCATTCCATGTCTAAG
1 TACGGAGTTCATTCCATGTCTAAG
21054049 CATACAGAGT
Statistics
Matches: 272, Mismatches: 60, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
156 1 0.00
157 44 0.16
158 144 0.53
159 82 0.30
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
TACGGAGTTCATTCCATGTCTAAGATCGGATTGGACCGAGGGTTGTGGCAGCAGGATCGACAGCA
CGCAGGGGGGGATGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCACCGCA
CGCTCGTTTCATGGGTTGACTTAGGCA
Found at i:21054052 original size:26 final size:26
Alignment explanation
Indices: 21054022--21054074 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21054012 GTTAGCTTAG
21054022 GCATACAGAGATCATT-CCATGTCTAA
1 GCATACAGAGATCATTCCCA-GTCTAA
*
21054048 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
21054074 G
1 G
21054075 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGATCATTCCCAGTCTAA
Found at i:21054541 original size:159 final size:159
Alignment explanation
Indices: 21054194--21055207 Score: 554
Period size: 159 Copynumber: 6.4 Consensus size: 159
21054184 CTCTGAGCAG
** *
21054194 CTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCA-GTCTAAG
1 CTGAGT-CCCGCACGCTCATTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCCATGTCTAAG
* ** * ** * * * ***
21054258 AT-CTAACCAGACCGAGGGTTACGACAGCAGGATCGACAGTACGAAG-GGGGGACCGAACCGATC
65 ATCCCAGTCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGA-CGGGTCGATC
* * * * * *
21054321 CCTGACTTGCGCATTCTGCGTC-TCTGG-TGTA
129 CCCGGCTTGTGCATTATGCCTCTTC-GGCCG-A
* * * *
21054352 CTGAGCGCCCTCACGC-CTATTTCGTTGGTTGGTTTAGGCATAGGGAGTTCATT-CCATGTCTAA
1 CTGAG-TCCCGCACGCTC-ATTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCCATGTCTAA
** * * *
21054415 G-TCCCAGTCGGACCGAGGGTTGTGGCAGGGGGACCGGCAGCACGCAGAGGGGGATCAGGTCGAT
64 GATCCCAGTCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGA-CGGGTCGAT
* *
21054479 CCCCAGCTTGCGCATTATGCCTCTTCGGCCGA
128 CCCCGGCTTGTGCATTATGCCTCTTCGGCCGA
* * * * *
21054511 CTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTCA-GCATACGAAGTTTATTCCCACT-T-TA
1 CTGAGT-CCCGCACGCTCATTTCGTGGGTTG-GTTTAGGCATACGGAGTTCATTCCCA-TGTCTA
*** ** * ** *
21054573 AGATTGGA-TCGGACTAAGGGTTGCT-ACAATAGGATCGACAGCACGCAGGGGGGGATCGGGTCG
63 AGATCCCAGTCGGACCGAGGGTTG-TGGCAGCAGGATCGACAGCACGCAGAGGGGGA-CGGGTCG
* * * * *
21054636 GTCCCCGGCTAGTGCATTTTGCCT-GTCTGGCCGG
126 ATCCCCGGCTTGTGCATTATGCCTCTTC-GGCCGA
* * * * *
21054670 CTGAGCTCCTGCACCCTCATTTCGTGGG-TAGTCTAAGCATACGGAGTTCATTCCCCA-GTCTAA
1 CTGAG-TCCCGCACGCTCATTTCGTGGGTTGGTTTAGGCATACGGAGTTCATT-CCCATGTCTAA
* * ** ** *
21054733 GAT--CAGACCGAACCGAGGGTTCCGATAGCAGGATCGACAGCACGTAGA-GGGGACCGGGTCGA
64 GATCCCAG-TCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGA-CGGGTCGA
* * * * * **
21054795 TCCCTGGCTGGTGCATTCTACCTCTCCGATCGA
127 TCCCCGGCTTGTGCATTATGCCTCTTCGGCCGA
* * * * * * * *
21054828 CTGAGCACCCGCACGCCCCTTTCATAGGTTGGCTTAGGCATAGGGAGTTTATT-CCATGTCTAAG
1 CTGAG-TCCCGCACGCTCATTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCCATGTCTAAG
* * * * * *
21054892 --CCCTAGCCAGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACTGGGCCGAT
65 ATCCC-AGTCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGAC-GGGTCGAT
* * ** * *
21054955 CACCGGCCTACGCATTATGCCTCTTCGGCTGG
128 CCCCGGCTTGTGCATTATGCCTCTTCGGCCGA
* * * * ** ** * *
21054987 CTCAACTCTCGCACCCTCGGTTCGTGGGTTGAATTATGCGTACGGAGTTCATTCCCA-GTCTAAG
1 CT-GAGTCCCGCACGCTCATTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCCATGTCTAAG
*** * * ** *
21055051 ATTGGACT-GGACCGA-GGTTGCT-GCAGCAGGATCGACAGCACTCAGA-GGGGACCCGACTGAT
65 ATCCCAGTCGGACCGAGGGTTG-TGGCAGCAGGATCGACAGCACGCAGAGGGGGACGGGTC-GAT
* * * * *
21055112 CCCCGACTTTTGCATTCTGCCTCTCCGGCCAA
128 CCCCGGCTTGTGCATTATGCCTCTTCGGCCGA
* * * * *
21055144 CTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-GCATGTCTAAG
1 CTGAG-TCCCGCACGCTCATTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCCATGTCTAAG
21055208 CATACGGAGT
Statistics
Matches: 638, Mismatches: 179, Indels: 79
0.71 0.20 0.09
Matches are distributed among these distances:
156 5 0.01
157 89 0.14
158 220 0.34
159 303 0.47
160 20 0.03
161 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
CTGAGTCCCGCACGCTCATTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCCATGTCTAAGA
TCCCAGTCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACGGGTCGATCCC
CGGCTTGTGCATTATGCCTCTTCGGCCGA
Found at i:21055230 original size:26 final size:26
Alignment explanation
Indices: 21055181--21055232 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21055171 GTTGGCTTAG
*
21055181 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
21055207 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
21055233 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:21055926 original size:26 final size:26
Alignment explanation
Indices: 21055890--21055942 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21055880 GTTGACTTAG
21055890 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21055916 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21055942 G
1 G
21055943 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21056427 original size:26 final size:26
Alignment explanation
Indices: 21056391--21056443 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21056381 GTTTGCTTAG
21056391 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
21056417 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
21056443 G
1 G
21056444 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:21057040 original size:343 final size:349
Alignment explanation
Indices: 21056373--21057109 Score: 777
Period size: 343 Copynumber: 2.1 Consensus size: 349
21056363 CACACGTTCG
* * * * * *
21056373 TTTCGTGGGTTTG-CTTAGGCATATGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCA
1 TTTCATGGG-TTGACTTAGGCATACGAAGTTCATCCCATGTCCAAGCATACGGAGTTCATTCCCA
* *
21056437 GTCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGACTAGCAGTAGGATCGGCAGCATGCAG
65 GTCTAAGATCAGACCGGATCGAGGGTT-----AGTAGGACTAGCA--AGGATCGGCAACACGCAG
* * *
21056502 GGGTGGATCGAGCCGATCCCTGACTTTCACATTCTGCCTCTCCGACCTACTGAGCGCCCGCACGC
123 GGGTGGATCCAGCCGATCCCTGACTTGCACATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGC
* * * *
21056567 TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGATTAGATCGGATCGAGA
188 TCATTTCATGGGTTGACTTAAGCATACGGAGATCATCTCCAGTCTAAGACTAGATCGGACCGAGA
* ** * * * *
21056632 GTTGTGATAGTAGGATCGACAACATACAAGAAGGGACCAGGTCGGTCCTCAGCTTGCATATTCTG
253 GTTGTGACAACAGGACCGACAACACACAAGAAGGGACCAGGTCGATCCTCAGCTTGCACATTCTG
* ** * *
21056697 CCTCTCTGACCGGTTGAGTGCCCGTATGCTCA
318 CCTCTCCGACCGACTCAGTGCCCGCATGCTCA
21056729 TTTCATGGGTTGACTTAGGCATACGAAGTTCATCCC-TAGTCCAAGCATACGGAGTTCATTCCCA
1 TTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCAT-GTCCAAGCATACGGAGTTCATTCCCA
*
21056793 GTCTAAGATCGGACCGGATCGAGGGTT-GT-GG-C-AGC-AGGATCGGCAACACGCAGGGG-GGA
65 GTCTAAGATCAGACCGGATCGAGGGTTAGTAGGACTAGCAAGGATCGGCAACACGCAGGGGTGGA
* * *
21056852 -CCATGCCGATCCCT-AGCTTGCACATTCTGCCTCTCTGGCCGATTGAGCGCCCGCACGC-CAGT
130 TCCA-GCCGATCCCTGA-CTTGCACATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCA-T
* * * * * *
21056914 TTCGTGGGTTGGCTTAAGCATAGGGAGATCAT-TCCTTGTCTAAGCCCTAG-TCGGACCGAGGGT
192 TTCATGGGTTGACTTAAGCATACGGAGATCATCTCC-AGTCTAAG-ACTAGATCGGACCGAGAGT
* * * * * * * * *
21056977 TGTGGCAACGGGACCGATAGCACAC-AGAGGGGGATCGGGTTGATCC-CTAGCTTGCGCATTCTG
255 TGTGACAACAGGACCGACAACACACAAGA-AGGGACCAGGTCGATCCTC-AGCTTGCACATTCTG
*
21057040 CCTCTCCGATCGACTCAGTGCCCGCATGCTCA
318 CCTCTCCGACCGACTCAGTGCCCGCATGCTCA
21057072 TTTCATGGGTTGACTTAGGCATAC-AGAGTTCATTCCCA
1 TTTCATGGGTTGACTTAGGCATACGA-AGTTCA-TCCCA
21057110 ATCTAAGGTC
Statistics
Matches: 322, Mismatches: 47, Indels: 35
0.80 0.12 0.09
Matches are distributed among these distances:
342 13 0.04
343 193 0.60
344 26 0.08
347 3 0.01
348 1 0.00
349 2 0.01
350 2 0.01
355 4 0.01
356 78 0.24
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (349 bp):
TTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATGTCCAAGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCGGATCGAGGGTTAGTAGGACTAGCAAGGATCGGCAACACGCAGGGGTGGAT
CCAGCCGATCCCTGACTTGCACATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCA
TGGGTTGACTTAAGCATACGGAGATCATCTCCAGTCTAAGACTAGATCGGACCGAGAGTTGTGAC
AACAGGACCGACAACACACAAGAAGGGACCAGGTCGATCCTCAGCTTGCACATTCTGCCTCTCCG
ACCGACTCAGTGCCCGCATGCTCA
Found at i:21057063 original size:159 final size:158
Alignment explanation
Indices: 21056771--21057202 Score: 373
Period size: 159 Copynumber: 2.7 Consensus size: 158
21056761 TCCCTAGTCC
* * * ** * * ** * * *
21056771 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCAGGATCGG
1 AAGCATACAGAGATCATTCCCAATCTAAGCCCAGACCGGACCGAGGGTTACGGCAACAGGACCGA
* * * ** ** * * * *
21056836 CAACACGCAGGGGGGACCATGCCGATCCCTAGCTTGCACATTCTGCCTCTCTGGCCGATTGAGCG
66 TAGCACACAGGGGGGACCGGGTTGATCCCTAGCTTGCACATTCTGCCTCTCCGACCGACTCAGCG
* *
21056901 CCCGCACGC-CAGTTTCGTGGGTTGGCTT
131 CCCGCACGCTCA-TTTCATGGGTTGACTT
** *** * ** *
21056929 AAGCATAGGGAGATCATTCCTTGTCTAAGCCCTAG-TCGGACCGAGGGTTGTGGCAACGGGACCG
1 AAGCATACAGAGATCATTCCCAATCTAAGCCC-AGACCGGACCGAGGGTTACGGCAACAGGACCG
* * *
21056993 ATAGCACACAGAGGGGGATCGGGTTGATCCCTAGCTTGCGCATTCTGCCTCTCCGATCGACTCAG
65 ATAGCACACAG-GGGGGACCGGGTTGATCCCTAGCTTGCACATTCTGCCTCTCCGACCGACTCAG
* *
21057058 TGCCCGCATGCTCATTTCATGGGTTGACTT
129 CGCCCGCACGCTCATTTCATGGGTTGACTT
* * ** * * *
21057088 AGGCATACAGAGTTCATTCCCAATCTAAGGTCAGACCGGACCGAGGGTTACGGTAGCAGGATCGA
1 AAGCATACAGAGATCATTCCCAATCTAAGCCCAGACCGGACCGAGGGTTACGGCAACAGGACCGA
* * *
21057153 TAGCACGCAGGGGGGACCGGGTTGATCCCCAGCTTGTACATTCTGGCCTC
66 TAGCACACAGGGGGGACCGGGTTGATCCCTAGCTTGCACATTCT-GCCTC
21057203 CAGCCGGTTG
Statistics
Matches: 217, Mismatches: 52, Indels: 9
0.78 0.19 0.03
Matches are distributed among these distances:
158 89 0.41
159 126 0.58
160 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
AAGCATACAGAGATCATTCCCAATCTAAGCCCAGACCGGACCGAGGGTTACGGCAACAGGACCGA
TAGCACACAGGGGGGACCGGGTTGATCCCTAGCTTGCACATTCTGCCTCTCCGACCGACTCAGCG
CCCGCACGCTCATTTCATGGGTTGACTT
Found at i:21057731 original size:26 final size:26
Alignment explanation
Indices: 21057700--21057750 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21057690 TGGCTTAGGC
21057700 ATACGGAGTTCATTCC-ATGTCTAAGT
1 ATACGGAGTTCATTCCTAT-TCTAAGT
21057726 ATACGGAGTTCATTCCTATTCTAAG
1 ATACGGAGTTCATTCCTATTCTAAG
21057751 ATTTTGAGCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (26 bp):
ATACGGAGTTCATTCCTATTCTAAGT
Found at i:21058645 original size:26 final size:26
Alignment explanation
Indices: 21058615--21058667 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21058605 GTTGGCTTAG
*
21058615 GCATAGGGAGTTCACT-CCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
*
21058641 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
21058667 G
1 G
21058668 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:21058667 original size:184 final size:184
Alignment explanation
Indices: 21058358--21059034 Score: 683
Period size: 196 Copynumber: 3.5 Consensus size: 184
21058348 ATCACCCGTT
* * * * * ** * * **
21058358 CGATCCCTGGCTTGCGCATCCTGCCTCTCTGGTCGGTTGAGCGCCCGCATGCTTGTTTCATGGGT
1 CGATCCCTAGCTTGCGCATTCTACCTCTCCGATCGACTGAGCACCCGCACGCTCATTTCATGGGT
* * * * * * *
21058423 TGACTTAGGTAGACGGAGTTCATCCCCA-GACTAAGCATAAGGAGTTCATTCCCAGTCTAAGATT
66 TGGCTTAGGCATACGGAGTTCA-CTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
*
21058487 GGACCGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGTAGAGGGGACCGGGC
130 GGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGTAGAGGGGACCGGGC
* * * * *
21058542 CGATCCCTAGCTTGCGTATTCTACCTCTTCGATCGGCTGAGCACCCGCATGCCCATTTCATGGGT
1 CGATCCCTAGCTTGCGCATTCTACCTCTCCGATCGACTGAGCACCCGCACGCTCATTTCATGGGT
*
21058607 TGGCTTAGGCATAGGGAGTTCACTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
66 TGGCTTAGGCATACGGAGTTCACTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * *
21058672 AACCGAACCGAGGGTTGCGACAACAGGACCAGCAGCAGGATCGACAGTATGCAAGAGGGACCAGG
131 GACCGGACCGAGGGTTACGGCAGCAGGATC-G-A-CA-G--C-AC-GTA-G--AG-GGGACCGGG
21058737 C
184 C
* * *
21058738 CGATCCCT-GCCTTACGCATTCTGCCTCTCCGATCGACTGAGCACCCGCACGCTCGTTTCATGGG
1 CGATCCCTAG-CTTGCGCATTCTACCTCTCCGATCGACTGAGCACCCGCACGCTCATTTCATGGG
*
21058802 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
65 TTGGCTTAGGCATACGGAGTTCACTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
21058867 GGACCAGACCAAGGGTTACGACAGCAGGACCAGCAGCAGGATCGACAGCACGTAGGGGGGACTGG
130 GGACCGGACCGAGGGTT-----A-C--G----GCAGCAGGATCGACAGCACGTAGAGGGGACCGG
21058932 GC
183 GC
* * * ** *
21058934 CGATCCCAAGCTTGCGCATTCTACCTCTCCGACCGACTGAGTACCCATACGCTCATTTCGTGGGT
1 CGATCCCTAGCTTGCGCATTCTACCTCTCCGATCGACTGAGCACCCGCACGCTCATTTCATGGGT
*
21058999 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 TGGCTTAGGCATACGGAGTTCACTCCATGTCTAAGC
21059035 CCCAGCCGGA
Statistics
Matches: 408, Mismatches: 58, Indels: 42
0.80 0.11 0.08
Matches are distributed among these distances:
183 4 0.01
184 128 0.31
185 1 0.00
186 1 0.00
187 2 0.00
188 1 0.00
190 1 0.00
191 2 0.00
192 3 0.01
193 1 0.00
195 3 0.01
196 237 0.58
197 2 0.00
199 1 0.00
200 3 0.01
201 2 0.00
202 2 0.00
204 2 0.00
205 2 0.00
206 1 0.00
207 1 0.00
208 8 0.02
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (184 bp):
CGATCCCTAGCTTGCGCATTCTACCTCTCCGATCGACTGAGCACCCGCACGCTCATTTCATGGGT
TGGCTTAGGCATACGGAGTTCACTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
GACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGTAGAGGGGACCGGGC
Found at i:21058841 original size:26 final size:26
Alignment explanation
Indices: 21058811--21058863 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21058801 GTTGGCTTAG
21058811 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21058837 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21058863 G
1 G
21058864 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21058843 original size:196 final size:194
Alignment explanation
Indices: 21058509--21059034 Score: 739
Period size: 196 Copynumber: 2.7 Consensus size: 194
21058499 GGGTTACGGT
* * *
21058509 AGCAGGATCGACAGCACGTAGAGGGGACCGGGCCGATCCCTAGCTTGCGTATTCTACCTCTTCGA
1 AGCAGGATCGACAGCACGAAGA-GGGACCGGGCCGATCCCT-GCTTGCGCATTCTACCTCTCCGA
* * * * *
21058574 TCGGCTGAGCACCCGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCACTCCATGTCT
64 TCGACTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* *
21058639 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC-GAACCGAGGGTTGCGACAACAGGACCA
129 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAG-ACCAAGGGTTACGACAACAGGACCA
21058703 GC
193 GC
* * * * *
21058705 AGCAGGATCGACAGTATGCAAGAGGGACCAGGCCGATCCCTGCCTTACGCATTCTGCCTCTCCGA
1 AGCAGGATCGACAGCACG-AAGAGGGACCGGGCCGATCCCTG-CTTGCGCATTCTACCTCTCCGA
*
21058770 TCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
64 TCGACTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* *
21058835 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGACAGCAGGACCAG
129 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTACGACAACAGGACCAG
21058900 C
194 C
* * * *
21058901 AGCAGGATCGACAGCACGTAGGGGGGACTGGGCCGATCCCAAGCTTGCGCATTCTACCTCTCCGA
1 AGCAGGATCGACAGCACG-AAGAGGGACCGGGCCGATCCC-TGCTTGCGCATTCTACCTCTCCGA
* * ** *
21058966 CCGACTGAGTACCCATACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
64 TCGACTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
21059031 AAGC
129 AAGC
21059035 CCCAGCCGGA
Statistics
Matches: 292, Mismatches: 34, Indels: 8
0.87 0.10 0.02
Matches are distributed among these distances:
195 1 0.00
196 286 0.98
197 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (194 bp):
AGCAGGATCGACAGCACGAAGAGGGACCGGGCCGATCCCTGCTTGCGCATTCTACCTCTCCGATC
GACTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTACGACAACAGGACCAGC
Found at i:21059662 original size:26 final size:26
Alignment explanation
Indices: 21059632--21059684 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21059622 GTTGGCTTAG
*
21059632 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
21059658 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
21059684 G
1 G
21059685 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:21059981 original size:184 final size:184
Alignment explanation
Indices: 21059658--21060075 Score: 520
Period size: 184 Copynumber: 2.3 Consensus size: 184
21059648 CCATGTCTAA
* * *
21059658 GCATACGGAGTTCATTCCA-AGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAAGACTAGC
1 GCATACGGAGTTCA-TCCACAGTCTAAGATCAGACCGGACCGAGGGTTGCGCTAGCAAGACTAGC
** * ** *
21059722 AGCAGGATCGGTAGCATGCAGGGGTAGACCGAGCCAATCCACGGCTTTCGTATTTTGCCTCTCCA
65 AGCAGGATCGACAGCATGCAGGGGTAGACCAAGCCAATCCACGGCTTTCACATTCTGCCTCTCCA
* * ** *
21059787 GTCGGCCTCTCTGGCCTGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
130 GTCAGCCTCTCCGGCCAACTGAGCACCCACACGCTCATTTCATGGGTTGACTTAG
* *
21059842 GCATATGGAGTTCATCCACAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCTA-CAGGACTAGC
1 GCATACGGAGTTCATCCACAGTCTAAGATCAGACCGGACCGAGGGTTGC-GCTAGCAAGACTAGC
* * * *
21059906 AGCAGGATCGACAGTATGTAGGGGTGGACCAAGCCAATCCTCGGCTTTCACATTCTGCCTCTCC-
65 AGCAGGATCGACAGCATGCAGGGGTAGACCAAGCCAATCCACGGCTTTCACATTCTGCCTCTCCA
* ** * * *
21059970 GATCAGCCTCTCCGGCCAATTGAGTGCCCACACGCTCTTTTCGTGGTTTGACTTAG
130 G-TCAGCCTCTCCGGCCAACTGAGCACCCACACGCTCATTTCATGGGTTGACTTAG
**
21060026 GCATACGGAGTTCAT-CACCAGTCTAAGATCAGACCGGGTCGAGGGTTGCG
1 GCATACGGAGTTCATCCA-CAGTCTAAGATCAGACCGGACCGAGGGTTGCG
21060076 ACAGCAGGAT
Statistics
Matches: 201, Mismatches: 29, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
183 8 0.04
184 190 0.95
185 3 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATCCACAGTCTAAGATCAGACCGGACCGAGGGTTGCGCTAGCAAGACTAGCA
GCAGGATCGACAGCATGCAGGGGTAGACCAAGCCAATCCACGGCTTTCACATTCTGCCTCTCCAG
TCAGCCTCTCCGGCCAACTGAGCACCCACACGCTCATTTCATGGGTTGACTTAG
Found at i:21060216 original size:26 final size:26
Alignment explanation
Indices: 21060186--21060236 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21060176 TTGACTTAGA
*
21060186 CATACGGAGTTCA-TCCCTAGTCTAAG
1 CATACAGAGTTCATTCCC-AGTCTAAG
21060212 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
21060237 AATCAGACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:21060926 original size:26 final size:26
Alignment explanation
Indices: 21060896--21060948 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21060886 GTTGACCTAG
21060896 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21060922 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21060948 G
1 G
21060949 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21061437 original size:26 final size:26
Alignment explanation
Indices: 21061401--21061450 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
21061391 AGCTTAGGCG
21061401 TACGGAGTTCATT-CCATGTCTAAGCA
1 TACGGAGTTCATTCCCA-GTCTAAGCA
21061427 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
21061451 ATCACCCCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:21061539 original size:711 final size:711
Alignment explanation
Indices: 21060135--21061555 Score: 1651
Period size: 712 Copynumber: 2.0 Consensus size: 711
21060125 GCACATACTA
* * * * * *
21060135 CCTCTCCGATCGGTTGAGTGCCTGCGCACTCGTTTCATGGGTTGACTTAGACATACGGAGTTCAT
1 CCTCTCCGATCAGCTGAGCGCCTGCACACTCATTTCATGGGTTGACCTAGACATACGGAGTTCAT
* *
21060200 CCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAAATCAGACCGGATCGAGGGTTGCAAAAG
66 CCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAAATCAGACCGGACCGAGGGTTGCAAAAG
* ** * * * *
21060265 TAGGATCGGTAGCACGCAGGGGGGACCGGGTCGATCACCAGCTTACGCATTCTGCCTCTCCAGTC
131 CAGGATCGACAGCACGCAGGGGAGACCGAGCCCATCACCAGCTTACGCATTCTGCCTCTCCAGTC
* * *
21060330 GGCTGAACGCCTACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGATCATTCATTGTTTAA
196 GGCTGAACGCCTACACGCTCGTTTCATGGGTTGGCTTAGCCATAGGGAGATCATTCATTGTCTAA
* * * * * * *
21060395 GCCCCAGTCAGACCGAGGGTTGGGTAGTGGGATTGACAGCACGCAGAATGGGACCGGGTCGATCC
261 GCCCCAGTCAGACCGAGGGTTGGGCAGCGGGATCGACAACACGCAGAAGGGGACCGGGCCAATCC
* *
21060460 TCAGCTTGCACATTATGCCTCTCCGACCGGCTCAGCACCTGAACGATCATTTCGTGGGTTGACTT
326 TCAGCTTGCACATTATGCCTCTCCGACCGGCTCAACACCTGAACGATCATTTCATGGGTTGACTT
** ** * * * * *
21060525 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGATAGTAAGATCGA
391 AGGCATACGGAGTTCATTCAAAGTCTAAGATCAGATCGGACCAACGGTTGCGAAAGCAAGATCGA
* * * * * *
21060590 TAGCACGTATGGAGGGATCGGGCCGGTCCTCGACTTACTCATTCTACCTCTCCGGTCGGCTGAGT
456 CAGCACGCAAGGAGGGATCGGGCCGATCCCCGACTTACGCATTCTACCTCTCCGGTCGGCTGAGT
* * * *
21060655 GGCCGCACGCTCGTTTCGTGTGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTATGCATACAG
521 GCCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAG
* * ** * * * * * * * *
21060720 AGTTCATTCCTAGTCTTAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGACCAGCAGTAGGATT
586 AGTTCATTCCCAGTCTAAGATCACACCAGACCAAGGGTTACGGCAGCAAGACCAACAGCAGGATC
* * * *
21060785 GGCAGCACATAAGGGGGGATCGGGTCGATCCCCAGCTTACGCATTCTACCTCTCCAGTCGT
651 GGCAGCACATAAGGGGGGACCGAGCCAATCCCCAGCTTACGCATTCTACCTCTCCAGTCGT
* * *
21060846 CCTCTTCGATCAGCTGAGCGCCTGCACGCTCATTTCATGGGTTGACCTAGGCATACGGAGTTCAT
1 CCTCTCCGATCAGCTGAGCGCCTGCACACTCATTTCATGGGTTGACCTAGACATACGGAGTTCAT
* * * * * **
21060911 CCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGTAG
66 CCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAAATCAGACCGGACCGAGGGTTGCAAAAG
*
21060976 CAGGATCGACAGCACGCAGGGGAGACCGAGCCCATC-CCCGACTTACGCATTCTGCCTCTCCAG-
131 CAGGATCGACAGCACGCAGGGGAGACCGAGCCCATCACCAG-CTTACGCATTCTGCCTCTCCAGT
*
21061039 CTGGCTGAGCAC-CCGTACAC-C-CGTTTTATGGGTTGGCTTAGCCATAGGGAG-TCCATTCCA-
195 C-GGCTGA--ACGCC-TACACGCTCGTTTCATGGGTTGGCTTAGCCATAGGGAGAT-CATT-CAT
* **
21061099 TGTCTAAGCCCCAGTC-GAACCGAGGGTTGTGGCAGCGGGATCGACAACACGCAGAGGGGGATTG
254 TGTCTAAGCCCCAGTCAG-ACCGAGGGTTG-GGCAGCGGGATCGACAACACGCAGAAGGGGACCG
* * * ** ** * * * *
21061163 GGCCAATCC-CTGGCTTGCACGTTATGCCTTTTTGGTCTGCTCAACACCTGCACGCTCGTTTCAT
317 GGCCAATCCTC-AGCTTGCACATTATGCCTCTCCGACCGGCTCAACACCTGAACGATCATTTCAT
*
21061227 GGGTTGACTTAGGCATACGGAGTTCATTCAAAGTCTCAGATCAGA-CTGGACCAACGGTTGCGAA
381 GGGTTGACTTAGGCATACGGAGTTCATTCAAAGTCTAAGATCAGATC-GGACCAACGGTTGCGAA
* * * * * * * *
21061291 AGCAGGATTGACAGCATGCAAGGAGGGATCGGGCTGATCCCCGACTTACGCATTTTGCCTTTTCG
445 AGCAAGATCGACAGCACGCAAGGAGGGATCGGGCCGATCCCCGACTTACGCATTCTACCTCTCCG
* * * *
21061356 GTCGGTTGAGTGCCCGCACTCTCGTTTCGTGGGTTAGCTTAGGCGTACGGAGTTCATTCCATGTC
510 GTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTC
* *
21061421 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCACCCCAGACCAAGGGTTACGGCAGCAAGACCA
575 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCACACCAGACCAAGGGTTACGGCAGCAAGACCA
* ** ** ** *
21061486 ATAGCCA-GATCGGCAGCATGTCGGGGGGGACCGAGCCAATCCCTGGC-TACGCATTCTGCCTCT
640 ACAG-CAGGATCGGCAGCACATAAGGGGGGACCGAGCCAATCCCCAGCTTACGCATTCTACCTCT
21061549 CCAGTCG
704 CCAGTCG
21061556 GTTGAGCGCC
Statistics
Matches: 587, Mismatches: 111, Indels: 24
0.81 0.15 0.03
Matches are distributed among these distances:
710 6 0.01
711 250 0.43
712 323 0.55
713 8 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (711 bp):
CCTCTCCGATCAGCTGAGCGCCTGCACACTCATTTCATGGGTTGACCTAGACATACGGAGTTCAT
CCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAAATCAGACCGGACCGAGGGTTGCAAAAG
CAGGATCGACAGCACGCAGGGGAGACCGAGCCCATCACCAGCTTACGCATTCTGCCTCTCCAGTC
GGCTGAACGCCTACACGCTCGTTTCATGGGTTGGCTTAGCCATAGGGAGATCATTCATTGTCTAA
GCCCCAGTCAGACCGAGGGTTGGGCAGCGGGATCGACAACACGCAGAAGGGGACCGGGCCAATCC
TCAGCTTGCACATTATGCCTCTCCGACCGGCTCAACACCTGAACGATCATTTCATGGGTTGACTT
AGGCATACGGAGTTCATTCAAAGTCTAAGATCAGATCGGACCAACGGTTGCGAAAGCAAGATCGA
CAGCACGCAAGGAGGGATCGGGCCGATCCCCGACTTACGCATTCTACCTCTCCGGTCGGCTGAGT
GCCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAG
AGTTCATTCCCAGTCTAAGATCACACCAGACCAAGGGTTACGGCAGCAAGACCAACAGCAGGATC
GGCAGCACATAAGGGGGGACCGAGCCAATCCCCAGCTTACGCATTCTACCTCTCCAGTCGT
Found at i:21061826 original size:26 final size:26
Alignment explanation
Indices: 21061796--21061848 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21061786 GTTGACTTAG
*
21061796 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
21061822 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
21061848 G
1 G
21061849 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:21062523 original size:26 final size:26
Alignment explanation
Indices: 21062493--21062545 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21062483 GTTGGCTTAG
21062493 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
21062519 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21062545 G
1 G
21062546 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21063491 original size:26 final size:26
Alignment explanation
Indices: 21063461--21063513 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21063451 GTTGGCTTAG
*
21063461 GCATATGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
21063487 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
21063513 G
1 G
21063514 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:21063858 original size:26 final size:26
Alignment explanation
Indices: 21063828--21063880 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21063818 GTTGACTTAG
21063828 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21063854 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21063880 G
1 G
21063881 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21064317 original size:158 final size:158
Alignment explanation
Indices: 21063854--21064355 Score: 482
Period size: 158 Copynumber: 3.2 Consensus size: 158
21063844 CCCAGTCTAA
* * * * * *
21063854 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGACCAAGGGTTGCGGCAGTAGGATCGACA
* * ** ** * * ** *
21063919 GCACGCA-AGGGGGACTTGGCCGATCCCTGACTTACGCATTCTGCCTC-TCTGGCCGGCTGAGCA
65 GCACGTAGACGGGGACCGGGTTGATCCCCGACTTGCGCATTCTGCCTCTTC-GATCGGCTGAGCG
*
21063982 CCCATACGCCCGTTTCGTGGGTTGGCTTAG
129 CCCATACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * *
21064012 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGAACCAAGGGTTGTGGCAGTGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCG-ACCAAGGGTTGCGGCAGTAGGATCGA
* * * * * * *
21064075 TA--ACGTGCAGACAGGTACCGGGTTGATCCCCGGCTTGCGCATTATGCCTTTTCGATCGGCTCA
63 CAGCACGT--AGACGGGGACCGGGTTGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGCTGA
* ** * *
21064138 GCGCTCGCATGC-CT-GTTTCGTGTCTTGACTTAT
126 GCGC-C-CATACGCTCGTTTCGTGGGTTGGCTTAG
*
21064171 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACCAAGGGTTGCGGCAGTAGGATCGACA
* *
21064236 GCACGTAGA-GGGGACCGGGTTGATCCCCGACTTGCTCATTCTGCCTCTTCGATCGTCTGAGCGC
65 GCACGTAGACGGGGACCGGGTTGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGC
21064300 CCATACGCTCGTTTCGTGGGTTGGCTTAG
130 CCATACGCTCGTTTCGTGGGTTGGCTTAG
*
21064329 GCATACGGAGTTCATTCCAAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
21064356 CCCCAGCTGA
Statistics
Matches: 267, Mismatches: 61, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
156 7 0.03
157 8 0.03
158 132 0.49
159 104 0.39
160 8 0.03
161 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACCAAGGGTTGCGGCAGTAGGATCGACAG
CACGTAGACGGGGACCGGGTTGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCC
CATACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:21064547 original size:25 final size:26
Alignment explanation
Indices: 21064513--21064564 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21064503 GTTGACTTAG
*
21064513 GCATACGGAG-TCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
**
21064538 GCATAAGGAGTTCATTTCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
21064564 G
1 G
21064565 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:21064798 original size:684 final size:672
Alignment explanation
Indices: 21063600--21065041 Score: 1721
Period size: 684 Copynumber: 2.1 Consensus size: 672
21063590 TTGGCTTGTG
* * * * *
21063600 CATTCTACCTCTTCGATCGGCTAAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGA
1 CATTCTACCTCTTCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* *
21063665 AGTTCATTCCATGTCTAAGCACCAGTCGGACAAAGGGTTGTGGTAGCAGGACTGGTAGCGGGATC
66 AGTTCATTCCATGTCTAAGCACCAGTCGAACAAAGGGTTGTGGTAGCAGGACCGGTAGCGGGATC
* * ** *
21063730 GGCAGCACGCAGAGGGGGACCGGGCTGATTGCTGACTTACGCATTATGCCTCTCCGGCTGGCTGA
131 GACAGCACGCAGAGAGGGACCGGGCTGATCCCAGACTTACGCATTATGCCTCTCCGGCTGGCTGA
*
21063795 GAGACCGCACCCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
196 GAGACCGCACCCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAA
* * * * * *
21063860 GGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCAAGATCGACAGCACGC
261 GGAGTTCATTCCCAGTCTAAGATCAGATCAGATCAAGGGTTACGACAGCAAGATCGACAGCACAC
* * * **
21063925 AAGGGGGACTTGGCCGATCCCTGACTTACGCATTCTGCCTCTCTGGCCGGCTGAGCACCCATACG
326 AAGGGGGACTTGGCCGATCCCTGACTTACACATTCTGCCTCTCCGACCAACTGAGCACCCATACG
* *
21063990 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCAAG
391 CCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCAAG
* * * *** * * *
21064055 GGTTGTGGCAGTGGGACCGGTAACGTGCAGACAGGTACCGGGTTGATCCCCGGCTTGCGCATTAT
456 GGTTATGGCAGTGGGACCAGCAACACACAGACAGGGACCGGGCTGATCCCCGACTTGCGCATTAT
* * * * * *
21064120 GCCTTTTCGATCGGCTCAGCGCTCGCATGC-CTGTTTCGTGTCTTGACTTATGCATACGAAGTTC
521 GCCTCTTCGACCGGCTCAGCGCCCGCACGCTC-ATTTCGTGGCTTGACTTATGCATACGAAGTTC
* * * * *
21064184 ATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGTAGGATCGACAGCACGTAGAGGGG
585 ATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACAGAAGCAGGATCGACAACACGTAGAGGGG
* * *
21064249 ACCGGGTTGATCCCCGACTTGCT
650 ACCGGGTCGATCCCCAACTTGCA
* * **
21064272 CATTCTGCCTCTTCGATCGTCTGAGCGCCCATACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
1 CATTCTACCTCTTCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * ** *
21064337 AGTTCATTCCAAGTCTAAGCCCCAG-CTGAACTGAGGGTTGTGGTAGCAGGACCGGTAGTGGGAT
66 AGTTCATTCCATGTCTAAGCACCAGTC-GAACAAAGGGTTGTGGTAGCAGGACCGGTAGCGGGAT
* *
21064401 CGACAGCACGCAGAGAGGGACCGGGCTGATCCCCAG-CTTGCGCATTATGCCTCTCTGGTTGACC
130 CGACAGCACGCAGAGAGGGACCGGGCTGAT-CCCAGACTTACGCATTATGCCTCTC-CG--G---
* * * *
21064465 TCTCCGATTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG-TCATCC
188 ----C---TGGCTGAGAGACCGCACCCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCC
*
21064529 CCAGTCTAAGCATAAGGAGTTCATTTCCAGTCTAAGATCAGATCAGATCAAGGGTTACGACAGCA
246 CCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCAAGGGTTACGACAGCA
* * ** *
21064594 GGATC-AGCAGCACACAAGGGGGA-TTGGGCTGAT-CCTCGTTTTGCACATTCTGCCTCTCCGAC
311 AGATCGA-CAGCACACAAGGGGGACTT-GGCCGATCCCT-GACTTACACATTCTGCCTCTCCGAC
** * * *
21064656 CAACTGAGTGCCCATACGTCCGTTTTGTGGGTTGGCTTAGGCATAAGGAGTTCATTGCATGTCTA
373 CAACTGAGCACCCATACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTA
* * * * ** *
21064721 AGCCCCAGCCAAATCGAGGGTTATGGCA-TCGGGACCAGCAGCACACAGAGGGGGATCGGGCTGA
438 AGCCCCAACCAAACCAAGGGTTATGGCAGT-GGGACCAGCAACACACAGACAGGGACCGGGCTGA
* * * *
21064785 TCCCCGACTTGCGCATTATGCCTCTTCGGCCGGTTCAGCGCCCGTACGCTCATTTCGTGGGTTGA
502 TCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGCTCATTTCGTGGCTTGA
* * * *
21064850 CTTATGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCAGACCAGGGGTTACAGAAGCAGGAT
567 CTTATGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACAGAAGCAGGAT
* * * * *
21064915 CGACAATAGGTAGGGGGGACCGGGTCGATCCCTAATTTGCA
632 CGACAACACGTAGAGGGGACCGGGTCGATCCCCAACTTGCA
* * * * * *
21064956 CATTCTCCCTCTCCGACCGACTGAGCACCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGG
1 CATTCTACCTCTTCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* *
21065021 AGTTGATTCCATGTCCAAGCA
66 AGTTCATTCCATGTCTAAGCA
21065042 TACGGAGTTC
Statistics
Matches: 643, Mismatches: 107, Indels: 28
0.83 0.14 0.04
Matches are distributed among these distances:
671 1 0.00
672 158 0.25
673 3 0.00
675 1 0.00
682 1 0.00
683 7 0.01
684 425 0.66
685 47 0.07
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (672 bp):
CATTCTACCTCTTCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCACCAGTCGAACAAAGGGTTGTGGTAGCAGGACCGGTAGCGGGATC
GACAGCACGCAGAGAGGGACCGGGCTGATCCCAGACTTACGCATTATGCCTCTCCGGCTGGCTGA
GAGACCGCACCCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAA
GGAGTTCATTCCCAGTCTAAGATCAGATCAGATCAAGGGTTACGACAGCAAGATCGACAGCACAC
AAGGGGGACTTGGCCGATCCCTGACTTACACATTCTGCCTCTCCGACCAACTGAGCACCCATACG
CCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCAAG
GGTTATGGCAGTGGGACCAGCAACACACAGACAGGGACCGGGCTGATCCCCGACTTGCGCATTAT
GCCTCTTCGACCGGCTCAGCGCCCGCACGCTCATTTCGTGGCTTGACTTATGCATACGAAGTTCA
TTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACAGAAGCAGGATCGACAACACGTAGAGGGGA
CCGGGTCGATCCCCAACTTGCA
Found at i:21066130 original size:159 final size:158
Alignment explanation
Indices: 21065776--21067116 Score: 587
Period size: 159 Copynumber: 8.1 Consensus size: 158
21065766 AAGCATATTT
* * * *
21065776 AGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTACGACAGCAGGATCGACAGCACGCAG
1 AGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
* * ** *
21065841 GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGCCCGCACGCC
66 GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCACGCT
* *
21065906 CGTTTCGTGGGTTGGCTTAGGCATAGGG
131 CATTTCGTGGGTTGGCTTAGGCATACGG
* * ** * * * *
21065934 AGTTCATT-CCACGTCTAAG-CCCCAGCCAGG-CCGAGGGTTGTGGCAAC-GAGACCGGCAGCAC
1 AGTTCATTCCCA-ATCTAAGATCGGA-CC-GGACCGAGGGTTGCGGCAGCAG-GATCGACAGCAC
* ** * * * ** *
21065995 GCAGAGGGGGATCGAACCGGTCCCCGGCTTACGCATTATGCCTCTTTGGCCGGTTGAGCACCCGC
62 GCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGC
* *
21066060 ACGCTCATTTCGTGGGTTGACTTAGGCATACGT
126 ACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
* * *
21066093 AGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCAGTAGCAGGATCGACAGCAC-CTA
1 AGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC-A
** * * * * * *
21066157 GGGGGGACCGGGTAGATTCTCGACTTGCGCATTCTGCCTCTCCGGTCAGTTGAGCGCCCACACGC
65 GGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCACGC
21066222 TCATTTCGTGGGTTGGCTTAGGCATACGG
130 TCATTTCGTGGGTTGGCTTAGGCATACGG
* * *
21066251 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGTGTCGTGGCAGCAGGACTAGCAGTAGGATC
1 AGTTCATTCCCAATCTAAGATCGGACCGGACCGAG-G--GT---TGC-GG-C-AGC---AGGATC
* * * * * * * ** ** *
21066316 GGCAGCACGCAGGGGGGGACCAGACCGTTCCCCGACTTGTGAATTCTGCCTCTCCGATCGACTAA
54 GACAGCACGCA-GGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGA
* * ** * *
21066381 GTGCCTGCACGCTCATTTAATGGGTAGGCTTAGGCATACAG
118 GCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
* * ** * * * *
21066422 AGTTCATT-CCATGTCTAAG-CCCCAGTCAGACCGAGGGTTGTGGCAGCATGACCGACAGCGAGA
1 AGTTCATTCCCA-ATCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAGCA-G---G--ATC--GA
* * * ** * *
21066485 TTGGCAGCACGCAGAGAGGGACTGGGCTGATCCCCGATTTGCGCATTATGCCTCTCCGGCCAGCC
56 ----CAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCC-G-G
* *
21066550 TCTCCGACCGACTGAGCGCCAGCACGCTCATTTCATGGGTTGACTTAGGCATACGG
114 T-T--GA--G-C---GC-CC-GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
* * *** * ** * *
21066606 AGTTCA-TCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCTAAGGT
1 AGTTCATTCCC-AATCTAAG-AT-CGGA--CCGGACCGAGGGT-TG--CGG--CAG--C--AGGA
* * ** *
21066670 TGCGACAGCAAAATCGATAGCACGTAGGGGGGATCGGGTCGATCCTTGGCTTGCGCATTCTACCT
52 T-CGACAGC---A-C----G--C--AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCT
* * * * * * * *
21066735 CTCCGACCGGTTGAGTGCCCGGACGCCCGTTTCATGGGTTGGCGTAGGCATAGGG
104 CTCCGGCCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
* * * ** * * * * * * * **
21066790 AATTCATT-CCATGTCTAAG-CCCTAGTCGGATCGAGGGTTGTGGTAGCGGGACCGACAGGATAC
1 AGTTCATTCCCA-ATCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * * * * ** * * * * * *
21066853 AGAGAGGGATCGGGCTGATCCCTGGCTTGCGCATTATGCCTTTTTGGTCGGCTCAGTGCGCACAC
64 AG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCAC
* * * * *
21066918 GCTCGTATCGTGGGTTGACTTACGCATATGG
128 GCTCATTTCGTGGGTTGGCTTAGGCATACGG
* * * *
21066949 AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATTGACAGCACGCAA
1 AGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC-A
* * * **
21067014 GTGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGC
65 GGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCACGC
* * *
21067079 TCGTTTCATGGGCTGGCTTAGGCATACGG
130 TCATTTCGTGGGTTGGCTTAGGCATACGG
21067108 AGTTCATTC
1 AGTTCATTC
21067117 AATGTCTAAG
Statistics
Matches: 870, Mismatches: 227, Indels: 171
0.69 0.18 0.13
Matches are distributed among these distances:
157 6 0.01
158 153 0.18
159 313 0.36
160 15 0.02
161 2 0.00
162 3 0.00
163 2 0.00
164 4 0.00
165 4 0.00
167 5 0.01
168 2 0.00
170 27 0.03
171 143 0.16
172 1 0.00
173 1 0.00
174 1 0.00
175 2 0.00
176 1 0.00
177 2 0.00
178 1 0.00
179 1 0.00
180 6 0.01
181 2 0.00
182 2 0.00
183 3 0.00
184 89 0.10
185 4 0.00
186 6 0.01
187 2 0.00
188 8 0.01
189 2 0.00
190 4 0.00
191 2 0.00
192 3 0.00
193 4 0.00
194 2 0.00
195 2 0.00
196 3 0.00
197 35 0.04
198 2 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
AGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCACGCT
CATTTCGTGGGTTGGCTTAGGCATACGG
Found at i:21066299 original size:158 final size:158
Alignment explanation
Indices: 21065776--21066301 Score: 531
Period size: 158 Copynumber: 3.3 Consensus size: 158
21065766 AAGCATATTT
* * * * *
21065776 AGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTACGACAGCAGGATCGACAGCACGCAG
1 AGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
* * *
21065841 GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCC-GACCGACTGAGCGCCCGCACGC
66 GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACAG-TTGAGCGCCCGCACGC
* * *
21065905 CCGTTTCGTGGGTTGGCTTAGGCATAGGG
130 TCATTTCGTGGGTTGGCTTAGGCATACGG
* * ** * * * * *
21065934 AGTTCATT-CCACGTCTAAG-CCCCAGCCAGGCCGAGGGTTGTGGCAAC-GAGACCGGCAGCACG
1 AGTTCATTCCCA-ATCTAAGATCGGA-CCAGACCGAGGGTTGCGGCAGCAG-GATCGACAGCACG
* ** * * * ** * * *
21065996 CAGAGGGGGATCGAACCGGTCCCCGGCTTACGCATTATGCCTCTTTGGCCGGTTGAGCACCCGCA
63 CAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACAGTTGAGCGCCCGCA
* *
21066061 CGCTCATTTCGTGGGTTGACTTAGGCATACGT
127 CGCTCATTTCGTGGGTTGGCTTAGGCATACGG
* * * *
21066093 AGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCAGTAGCAGGATCGACAGCAC-CTA
1 AGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC-A
** * * * * *
21066157 GGGGGGACCGGGTAGATTCTCGACTTGCGCATTCTGCCTCTCCGGTCAGTTGAGCGCCCACACGC
65 GGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACAGTTGAGCGCCCGCACGC
21066222 TCATTTCGTGGGTTGGCTTAGGCATACGG
130 TCATTTCGTGGGTTGGCTTAGGCATACGG
* * * *
21066251 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGTGTCGTGGCAGCAGGA
1 AGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGA
21066302 CTAGCAGTAG
Statistics
Matches: 288, Mismatches: 71, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 6 0.02
158 161 0.56
159 112 0.39
160 9 0.03
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (158 bp):
AGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACAGTTGAGCGCCCGCACGCT
CATTTCGTGGGTTGGCTTAGGCATACGG
Found at i:21066521 original size:171 final size:171
Alignment explanation
Indices: 21066217--21066542 Score: 363
Period size: 171 Copynumber: 1.9 Consensus size: 171
21066207 TGAGCGCCCA
** * * * *
21066217 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
1 CACGCTCATTTAATGGGTAGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCAGACCAGAC
* * * * * *
21066282 CGAGTGTCGTGGCAGCAGGACTAGCAGTAGGATCGGCAGCACGCAGGGGGGGACCAGACCGTTCC
66 CGAGGGTCGTGGCAGCAGGACGAGCAGGAGGATCGGCAGCACGCAGAGAGGGACCAGACCGATCC
* *
21066347 CCGACTTGTGAATTCTGCCTCTCCGATCGACTAAGTGCCTG
131 CCGACTTGCGAATTATGCCTCTCCGATCGACTAAGTGCCTG
* *
21066388 CACGCTCATTTAATGGGTAGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCCCCAG-TCAG
1 CACGCTCATTTAATGGGTAGGCTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ACCAGACCAG
* * * ** * *
21066451 ACCGAGGGTTGTGGCAGCATGACCGA-CAGCGA-GATTGGCAGCACGCAGAGAGGGACTGGGCTG
64 ACCGAGGGTCGTGGCAGCAGGA-CGAGCAG-GAGGATCGGCAGCACGCAGAGAGGGACCAGACCG
* *
21066514 ATCCCCGATTTGCGCATTATGCCTCTCCG
127 ATCCCCGACTTGCGAATTATGCCTCTCCG
21066543 GCCAGCCTCT
Statistics
Matches: 126, Mismatches: 25, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
170 3 0.02
171 118 0.94
172 5 0.04
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (171 bp):
CACGCTCATTTAATGGGTAGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCAGACCAGAC
CGAGGGTCGTGGCAGCAGGACGAGCAGGAGGATCGGCAGCACGCAGAGAGGGACCAGACCGATCC
CCGACTTGCGAATTATGCCTCTCCGATCGACTAAGTGCCTG
Found at i:21066628 original size:26 final size:26
Alignment explanation
Indices: 21066598--21066650 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21066588 GTTGACTTAG
21066598 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
21066624 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21066650 G
1 G
21066651 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21067405 original size:514 final size:502
Alignment explanation
Indices: 21066547--21067481 Score: 1138
Period size: 514 Copynumber: 1.8 Consensus size: 502
21066537 TCTCCGGCCA
*
21066547 GCCTCTCCGACCGACTGAGCGCCAGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGACCGACTGAGCGCCAGCACGCTCATTTCATGGGCTGACTTAGGCATACGGAGTTCA
**
21066612 TCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCTAAGGTTGCGACA
66 TCAATAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCTAAGGTTGCGACA
* * * * *** *
21066677 GCAAAATCGATAGCACGTAGGGGGGATCGGGTCGATCCTTGGCTTGCGCATTCTACCTCTCCGAC
131 GCAAAATCGACAGCACGCAGGGGGGACCAGGTCGATCCCCAGCTTGCACATTCTACCTCTCCGAC
* * ** * *
21066742 CGGTTGAGTGCCCGGACGCCCGTTTCATGGGTTGGCGTAGGCATAGGGAATTCATTCCATGTCTA
196 AGGCTGAACGCCCGCACACCCGTTTCATGGGTTGGCGTAGGCATAGGGAATTCATTCCATGTCTA
* * * * * *
21066807 AGCCCTAGTCGGATCGAGGGTTGTGGTAGCGGGACCGACAGGATACAGAGAGGGATCGGGCTGAT
261 AGCCCCAGCCAGAACGAGGGTTGTGGTAGCGGGACCGACAGCACACAGAGAGGGATCGGGCTGAT
* * ** * ** * *
21066872 CCCTGGCTTGCGCATTATGCCTTTTTGGTCGGCTCAGTGCGCACACGCTCGTATCGTGGGTTGAC
326 CCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCACCCACACGCTCATATCGTGGGTTGAC
* *
21066937 TTACGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATT
391 TTACGCATACGGAGTTCATCCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATT
21067002 GACAGCACGCAAGTGGGGACCGGGCTGATCCCCAGCTTGCGCATTCT
456 GACAGCACGCAAGTGGGGACCGGGCTGATCCCCAGCTTGCGCATTCT
* * * *
21067049 GCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGCTGGCTTAGGCATACGGAGTTCA
1 GCCTCTCCGACCGACTGAGCGCCAGCACGCTCATTTCATGGGCTGACTTAGGCATACGGAGTTCA
* * *
21067114 TTCAAT-GTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATC-GATCCAGACCGAGGGTTGAGG
66 -TCAATAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT-CAGACC------TAAGG
* * *
21067177 TAGTAG-GACAAGTAACAGGATCTACAGCACGCATGGGGGACCAGGTCGATCCCCAGCTTGCACA
123 T--T-GCGAC-AGCAA-A--ATCGACAGCACGCAGGGGGGACCAGGTCGATCCCCAGCTTGCACA
* * * * ** * * *
21067241 TTCTGCCTCTTCGACAGGCTGAACGCCTGCACACTCGTTTTGTGGGTTGGCTTATGCATAGGGAG
181 TTCTACCTCTCCGACAGGCTGAACGCCCGCACACCCGTTTCATGGGTTGGCGTAGGCATAGGGAA
* * * *
21067306 TTCATTCCATGTCTATGCCCCAGCCAGAACGAGGGTTGTGGTAGCGGGATCGACAGCACGCAGCG
246 TTCATTCCATGTCTAAGCCCCAGCCAGAACGAGGGTTGTGGTAGCGGGACCGACAGCACACAGAG
* * * *
21067371 GGGGATCGGGTTGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCACCCGCACGCTC
311 AGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCACCCACACGCTC
* * *
21067436 ATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
376 ATATCGTGGGTTGACTTACGCATACGGAGTTCATCCCCAGTCTAAG
21067482 CATATGAAGT
Statistics
Matches: 354, Mismatches: 64, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
501 3 0.01
502 100 0.28
503 3 0.01
508 5 0.01
510 4 0.01
511 5 0.01
512 1 0.00
514 233 0.66
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (502 bp):
GCCTCTCCGACCGACTGAGCGCCAGCACGCTCATTTCATGGGCTGACTTAGGCATACGGAGTTCA
TCAATAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCTAAGGTTGCGACA
GCAAAATCGACAGCACGCAGGGGGGACCAGGTCGATCCCCAGCTTGCACATTCTACCTCTCCGAC
AGGCTGAACGCCCGCACACCCGTTTCATGGGTTGGCGTAGGCATAGGGAATTCATTCCATGTCTA
AGCCCCAGCCAGAACGAGGGTTGTGGTAGCGGGACCGACAGCACACAGAGAGGGATCGGGCTGAT
CCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCACCCACACGCTCATATCGTGGGTTGAC
TTACGCATACGGAGTTCATCCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATT
GACAGCACGCAAGTGGGGACCGGGCTGATCCCCAGCTTGCGCATTCT
Found at i:21067688 original size:343 final size:341
Alignment explanation
Indices: 21066925--21067915 Score: 1022
Period size: 343 Copynumber: 2.9 Consensus size: 341
21066915 CACGCTCGTA
* * ** *
21066925 TCGTGGGTTGACTTACGCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTT
1 TCGTGGGTTGGCTTACGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGAACGAGGGTT
* * * * * *
21066988 GCGGCAGCAGGATTGACAGCACGCAAGTGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCT
64 GTGGCAGCGGGATCGACAGCACGC-AGGGGGGACCGGGTTGATCCCCAGCTTGCGCATTATGCCT
* * * * * *
21067053 CTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGCTGGCTTAGGCATACGGAGTTCAT-TC
128 CTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCC
* * *
21067117 AATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGATCCAGACCGAGGGTTGAGGTAGTA
193 AA-GTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGAT-CGGACCGAGGG-T----T-G--
* * *
21067182 GGACAAGTAACAGGATCTA-CAGCACGCATGGGGGACCAGGTCGATCCCCAGCTTGCACATTCTG
248 CGAC-AG---CAGGATC-AGCAGCACGCAGGGGGGACCAGGTCGATCCCCAGCTTACACATTCTG
* *
21067246 CCTCTTCGACAGGCTGAACGCCTGCACACTCGTT
308 CCTCTCCGACAGGCTGAACGCCTGCACACCCGTT
* * * *
21067280 TTGTGGGTTGGCTTATGCATAGGGAGTTCATTCCATGTCTATGCCCCAGCCAGAACGAGGGTTGT
1 TCGTGGGTTGGCTTACGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAACGAGGGTTGT
* * *
21067345 GGTAGCGGGATCGACAGCACGCAGCGGGGGATCGGGTTGATCCCCGGCTTGCGCATTATGCCTCT
66 GGCAGCGGGATCGACAGCACGCAG-GGGGGACCGGGTTGATCCCCAGCTTGCGCATTATGCCTCT
** * * *
21067410 CCGATCGGCTGAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA
130 CCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAA
* * *
21067475 GTCTAAGCATATGAAGTTTATTCCCAGTCTAGGATCGGATCGGATCGAGGGTTGCGACAGCAGGA
195 GTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATC-GATCGGACCGAGGGTTGCGACAGCAGGA
* * * ** *
21067540 TCAGTAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTATGCATTCTGCCTCTCC-AGCCGGCT
259 TCAGCAGCACGCAGGGGGGACCAGGTCGATCCCCAGCTTACACATTCTGCCTCTCCGA-CAGGCT
* ** *
21067604 GAGCGCCTGTGCGCCCGTT
323 GAACGCCTGCACACCCGTT
* ** *
21067623 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCGAGGGTTGT
1 TCGTGGGTTGGCTTACGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAACGAGGGTTGT
** * * * * * *
21067688 GGCAATGGGACCGGCAGCACGAAGAGGGGGACCGGGTCGATCCCCACCTTGCGCATTATGTCTCT
66 GGCAGCGGGATCGACAGCACGCAG-GGGGGACCGGGTTGATCCCCAGCTTGCGCATTATGCCTCT
* * * * * **
21067753 TCGGCCGGCTCAGCGCCTGCACGATCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCTTA
130 CCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAA
* * * * * *
21067818 GTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGATCGAACCAAGGGTTACGGCAGCAGGA
195 GTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATC-GATCGGACCGAGGGTTGCGACAGCAGGA
* * *
21067883 TC-GACACCACACAGGGGGGACCAGGCCGATCCC
259 TCAG-CAGCACGCAGGGGGGACCAGGTCGATCCC
21067916 TGACTTGCGC
Statistics
Matches: 533, Mismatches: 95, Indels: 28
0.81 0.14 0.04
Matches are distributed among these distances:
342 3 0.01
343 316 0.59
346 2 0.00
347 3 0.01
349 1 0.00
350 1 0.00
354 6 0.01
355 193 0.36
356 8 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (341 bp):
TCGTGGGTTGGCTTACGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAACGAGGGTTGT
GGCAGCGGGATCGACAGCACGCAGGGGGGACCGGGTTGATCCCCAGCTTGCGCATTATGCCTCTC
CGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAG
TCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGATCGGACCGAGGGTTGCGACAGCAGGATC
AGCAGCACGCAGGGGGGACCAGGTCGATCCCCAGCTTACACATTCTGCCTCTCCGACAGGCTGAA
CGCCTGCACACCCGTT
Found at i:21067848 original size:26 final size:26
Alignment explanation
Indices: 21067798--21067850 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21067788 GTTGACTTAG
* *
21067798 GCATACGAAGTTCATCCTTAGTCTAA
1 GCATACGAAGTTCATCCTCAATCTAA
21067824 GCATACGAAGTTCATTCC-CAATCTAA
1 GCATACGAAGTTCA-TCCTCAATCTAA
21067850 G
1 G
21067851 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCTCAATCTAA
Found at i:21068151 original size:26 final size:26
Alignment explanation
Indices: 21068121--21068173 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21068111 GTTGACTTAG
21068121 GCATACGGAGTTCA-TCGCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
21068147 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21068173 G
1 G
21068174 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21068667 original size:158 final size:159
Alignment explanation
Indices: 21068296--21068689 Score: 382
Period size: 158 Copynumber: 2.5 Consensus size: 159
21068286 GTTTCCCGGA
* ** ** * * *
21068296 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAATCGGATTGAGTGTTGTGGCAGCG
1 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACA
* * * * * ** * * *
21068361 GGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGTCTTGCGTATTATGCCTCTTCGTCCG
66 GGATCGATAGCACACAGAGGGGGACCAGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACCA
* * *
21068426 GCTCAGCACCCGTACGCTCATTTCATGGG
131 GCTAAGCACCCGCAAGCTCATTTCATGGG
* * ** * ** *
21068455 TTGACATAGGCATACAGAGTTCATTCCCA-GACTAAG-ATCAGACTGGACCGAGGGTTGTGGCAA
1 TTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAA
* * ** *
21068518 TAGGATCGATAGCACACAG-GGGGGATCAGGCCGATCCTTGGCTTGCACATTCTGCCTCTCCGAC
64 CAGGATCGATAGCACACAGAGGGGGACCAGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGAC
* * *
21068582 CAGCTAAGCGCCCGCAAGCTCGTTTCGTGGG
129 CAGCTAAGCACCCGCAAGCTCATTTCATGGG
* *
21068613 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGC-AGA
1 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACA
21068677 GAGATCGATAGCA
66 G-GATCGATAGCA
21068690 GGTAGTGTTG
Statistics
Matches: 183, Mismatches: 47, Indels: 11
0.76 0.20 0.05
Matches are distributed among these distances:
157 6 0.03
158 116 0.63
159 58 0.32
160 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (159 bp):
TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACA
GGATCGATAGCACACAGAGGGGGACCAGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACCA
GCTAAGCACCCGCAAGCTCATTTCATGGG
Found at i:21068789 original size:26 final size:26
Alignment explanation
Indices: 21068748--21068799 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21068738 GTTGACTTAG
*
21068748 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTGCATTCCCAGTCTAA
*
21068774 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACGAAGTGCATTCCCAGTCTAA
21068800 TATCGGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTGCATTCCCAGTCTAA
Found at i:21069276 original size:26 final size:26
Alignment explanation
Indices: 21069226--21069278 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21069216 GTTGGCTTAG
* *
21069226 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTAATTCCATATCTAA
21069252 GCATACAGAGTTAATTCC-TAATCTAA
1 GCATACAGAGTTAATTCCAT-ATCTAA
21069278 G
1 G
21069279 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCATATCTAA
Found at i:21069643 original size:26 final size:26
Alignment explanation
Indices: 21069594--21069646 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21069584 GTTGACTTAG
* *
21069594 GCATACGGAGTTCATCCCTTGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
21069620 GCATACAGAGTTCATTCCC-AGTCTAA
1 GCATACAGAGTTCA-TCCCTAGTCTAA
21069646 G
1 G
21069647 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:21070117 original size:158 final size:157
Alignment explanation
Indices: 21069675--21070119 Score: 410
Period size: 157 Copynumber: 2.8 Consensus size: 157
21069665 CCGCGGTAGT
** * * * * * * **
21069675 AGGATCGACAGCACACA-GAGGGGACCAAGTCGATCCCCGGCTTACACATTCTACCTCTCCGATC
1 AGGATCGACAGCATGCAGGGGGGGACCGAGTCGATCCTC-GCTTGCACATTATGCCTCTCCGGCC
* * * * * *
21069739 GGTTGAGCACCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAT
65 GGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * **
21069804 GCCCAGCCGGACTGAGGGTTGTGGTAGC
130 GACCAGCCGGACTGAGGGTTGCGACAGC
* * * * * * * * * *
21069832 GGGACCTACAGCATGCAGAGGGGGACCGAGTCGATCCTTGGTTGCGCATTATGCCTCGCCAGCAG
1 AGGATCGACAGCATGCAGGGGGGGACCGAGTCGATCCTCGCTTGCACATTATGCCTCTCCGGCCG
* ** ** ** * * *
21069897 GCTCAGTGCCTACACGCTCATTTCGTGGGTTAACTTAGGCAAACAGAGATCATTCCCA-GTCTAA
66 GCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA
* * *
21069961 GATCGGATCGGAC-GAGGGTTGCGACAGC
130 GACCAG-CCGGACTGAGGGTTGCGACAGC
* *
21069989 AGGATCGACAGCATGCAGGGGGGGACCGGGTCGATCCTCGACTTGCACATTTTGCCTCTCCGGCC
1 AGGATCGACAGCATGCAGGGGGGGACCGAGTCGATCCTCG-CTTGCACATTATGCCTCTCCGGCC
* *
21070054 GGCTGAGCACCCGCATGCTCATTTCGTGGGTTGGCTTAGGCCTACGGAGTTCATTCCATGTCTAA
65 GGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
21070119 G
130 G
21070120 CATACAGACT
Statistics
Matches: 216, Mismatches: 67, Indels: 9
0.74 0.23 0.03
Matches are distributed among these distances:
157 124 0.57
158 92 0.43
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
AGGATCGACAGCATGCAGGGGGGGACCGAGTCGATCCTCGCTTGCACATTATGCCTCTCCGGCCG
GCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
ACCAGCCGGACTGAGGGTTGCGACAGC
Found at i:21070502 original size:26 final size:26
Alignment explanation
Indices: 21070472--21070524 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21070462 GTAGACTTAG
21070472 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
21070498 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21070524 G
1 G
21070525 ATGGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21070978 original size:26 final size:26
Alignment explanation
Indices: 21070942--21070994 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21070932 GTTGCCTTAG
* *
21070942 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTCCATTCCCA-GTCTAA
21070968 GCATACAGAGTCCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
21070994 G
1 G
21070995 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:21071714 original size:26 final size:26
Alignment explanation
Indices: 21071666--21071718 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21071656 GTTGACTTAG
*
21071666 GCATACGGAGTTCATCCTGAGTCTAA
1 GCATACGGAGTTCATCCTCAGTCTAA
*
21071692 GCATATGGAGTTCATTCC-CAGTCTAA
1 GCATACGGAGTTCA-TCCTCAGTCTAA
21071718 G
1 G
21071719 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAGTCTAA
Found at i:21072045 original size:26 final size:26
Alignment explanation
Indices: 21072009--21072061 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21071999 GTTGGCTTAG
21072009 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21072035 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21072061 G
1 G
21072062 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21072255 original size:26 final size:26
Alignment explanation
Indices: 21072219--21072271 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21072209 GTTGACTTAG
21072219 GCATACAGAGTCCATCCCTAGTCTAA
1 GCATACAGAGTCCATCCCTAGTCTAA
* * *
21072245 GCATGCAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTCCATCCCTAGTCTAA
21072271 G
1 G
21072272 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTCCATCCCTAGTCTAA
Found at i:21072622 original size:26 final size:26
Alignment explanation
Indices: 21072588--21072638 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21072578 TTAACTTAGG
21072588 CATACGGAGTTCATCCCCAGTCTAAT
1 CATACGGAGTTCATCCCCAGTCTAAT
* *
21072614 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
21072639 GATCGGACAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAT
Found at i:21073113 original size:159 final size:158
Alignment explanation
Indices: 21072614--21073115 Score: 480
Period size: 159 Copynumber: 3.2 Consensus size: 158
21072604 CCAGTCTAAT
* * * *
21072614 CATATGGAGTTCATTCCCAGTCTAAGATCGGA-CAGGATCGAGGGTTGCAACAGTAGGATCGGTA
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GATCGAGGGTTGCAACAGCAGGATCGATA
** * * * * * *
21072678 GCATGCA-GGGGGGATCGGGCCAATCCCCGACTTACGCATTCTGCCTCTCCGGCCGGCTGAGCTC
65 GCATATAGGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCAC
* *
21072742 CCGCACGCCCATTTCATGGGTTGGCTTAGG
130 CCGCACGCTCATTTCGTGGGTT-GCTTAGG
* ** ** * * * *
21072772 CATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CCAGATCGAGGGTTGTGACAACGGGACCGAC
1 CATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCAGATCGAGGGTTGCAACAGCAGGATCGAT
* * * ** * * * * * ** *
21072835 AACACATAGAGGGGGATCGAACCGATCCTCGGTTTGCGTATTATGCCTATTTGACCT-GCTCAGC
64 AGCATATAGGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CTGGCTGAGC
*
21072899 ACCCGCACGCTCATTTCGTGGGTTGACTTACG
128 ACCCGCACGCTCATTTCGTGGGTTG-CTTAGG
* *
21072931 CATACGGAGTTCATTCCCAGTCTATGATCAGACCAGA-CTGAGGGTTGCAATAGCAGGATCGATA
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCAACAGCAGGATCGATA
* *
21072995 GCATATAGGGGGGGA-CTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCG
65 GCATATAGGGGGGGATC-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCA
*
21073059 CCCGCACGCTCGTTTCGTGGGTTAGCTTAGG
129 CCCGCACGCTCATTTCGTGGGTT-GCTTAGG
21073090 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
21073116 CATACCGCGT
Statistics
Matches: 266, Mismatches: 65, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
157 3 0.01
158 55 0.21
159 203 0.76
160 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAACAGCAGGATCGATAG
CATATAGGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCACC
CGCACGCTCATTTCGTGGGTTGCTTAGG
Found at i:21073127 original size:26 final size:26
Alignment explanation
Indices: 21073089--21073141 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21073079 GTTAGCTTAG
*
21073089 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACCGAGTTCATTTCCA-GTCTAA
*
21073115 GCATACCGCGTTCATTTCCAGTCTAA
1 GCATACCGAGTTCATTTCCAGTCTAA
21073141 G
1 G
21073142 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACCGAGTTCATTTCCAGTCTAA
Found at i:21074625 original size:26 final size:26
Alignment explanation
Indices: 21074589--21074641 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21074579 CTGATTTGAT
*
21074589 CTTAGACTGGGAATGAACGCTGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
* *
21074615 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
21074641 C
1 C
21074642 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCGTATG
Found at i:21075171 original size:26 final size:26
Alignment explanation
Indices: 21075142--21075194 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21075132 CCGATCTGAT
*
21075142 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
21075168 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21075194 C
1 C
21075195 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21075395 original size:26 final size:25
Alignment explanation
Indices: 21075366--21075416 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 25
21075356 GCTCAAACTT
21075366 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCC-TATGC
21075392 TTAGACATGGAATGAACTCCTATGC
1 TTAGACATGGAATGAACTCCTATGC
21075417 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (25 bp):
TTAGACATGGAATGAACTCCTATGC
Found at i:21075880 original size:201 final size:201
Alignment explanation
Indices: 21075518--21075885 Score: 526
Period size: 201 Copynumber: 1.8 Consensus size: 201
21075508 GCTGCCGGTA
**
21075518 CCACTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCTATTCCTAAGCCAA
1 CCACTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCTATGACTAAGCCAA
** * *
21075583 CCCATGAAACAGGCGTGTGGGCGCTCAACCGGTTGGAAAGGCAGAATACGCAAGCCGAGGATCAG
66 CCCATGAAACAGGCGTACGGGCGCTCAACCGGTCGGAAAGGCAAAATACGCAAGCCGAGGATCAG
* *
21075648 CTCGGTCCCCCACTGCGTGCTTTCGATCCTACTACTGGTCCTGCTGCCATAACCCTCTGCATGCT
131 CTCAGTCCCCCACTGCGTGCTTTCAATCCTACTACTGGTCCTGCTGCCATAACCCTCTGCATGCT
21075713 GTAGTC
196 GTAGTC
* * *
21075719 CCACTGCCACAACTCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCA
1 CCACTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACT-CCTATGACTAAGCCA
* * * * *
21075784 ACCGATGAAAC-GGACGTACGGGCGCTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATC
65 ACCCATGAAACAGG-CGTACGGGCGCTCAACCGGTCGGAAAGGCAAAATACGCAAGCCGAGGATC
**
21075848 AGCTCAGT-CCCCTTTGCGTG-TTGTCAATCCTACTACTG
129 AGCTCAGTCCCCCACTGCGTGCTT-TCAATCCTACTACTG
21075886 CAACGCTCGA
Statistics
Matches: 146, Mismatches: 18, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
200 2 0.01
201 72 0.49
202 72 0.49
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (201 bp):
CCACTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCTATGACTAAGCCAA
CCCATGAAACAGGCGTACGGGCGCTCAACCGGTCGGAAAGGCAAAATACGCAAGCCGAGGATCAG
CTCAGTCCCCCACTGCGTGCTTTCAATCCTACTACTGGTCCTGCTGCCATAACCCTCTGCATGCT
GTAGTC
Found at i:21075936 original size:26 final size:26
Alignment explanation
Indices: 21075907--21075959 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21075897 CCGATCTGAT
*
21075907 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* * *
21075933 CTTATACTGGGGATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
21075959 C
1 C
21075960 CTAAGTCAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:21077703 original size:26 final size:25
Alignment explanation
Indices: 21077661--21077712 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
21077651 TCGATCCAAT
21077661 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
21077686 CTTAGACATGTAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
21077712 C
1 C
21077713 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:21078412 original size:26 final size:26
Alignment explanation
Indices: 21078374--21078426 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21078364 GGCTCAAACT
21078374 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21078400 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21078426 C
1 C
21078427 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21078858 original size:159 final size:158
Alignment explanation
Indices: 21078443--21078890 Score: 447
Period size: 158 Copynumber: 2.8 Consensus size: 158
21078433 CAACGCACGA
* * * * * * *
21078443 AATGAGCAAGCCGGGGATCAGCCCCGTCCCCCTCTGTGTGCTGCCGGTCTCACTGCCACAACCCT
1 AATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCACTGCCACAACCCT
* ** *
21078508 CGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAGCG
66 CGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAGCA
* *
21078573 TACGGATGCTCAACCGGCCGAAGAGGCAG
131 TACGGA-GCACAACCAGCCGAAGAGGCAG
* * * * * * * * **
21078602 CATGCGTAAGCCGAGGACCGACCCGGT-CCCCTCTACGTGCTATCGATCCTACTGCCGTAACCCT
1 AATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCACTGCCACAACCCT
* * ** * * * *
21078666 CGATCCAGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATTAAATGAG
66 CGGTCCGGT-TGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAG
* *
21078729 CATTCGG-GCACTAAGCCAGCC-AGAGAGGCAT
129 CATACGGAGCAC-AA-CCAGCCGA-AGAGGCAG
* * * *
21078760 AATGCGCAAGCTGGGGATCGGCCTGGTCCCCCTCTGCGTACTGTCGATCCCACTGCCACAACTCT
1 AATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCACTGCCACAACCCT
* * *
21078825 CGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATGAAACGGGCA
66 CGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAGCA
21078890 T
131 T
21078891 GCGGGCGCTC
Statistics
Matches: 224, Mismatches: 57, Indels: 16
0.75 0.19 0.05
Matches are distributed among these distances:
156 3 0.01
157 4 0.02
158 114 0.51
159 102 0.46
160 1 0.00
ACGTcount: A:0.24, C:0.32, G:0.25, T:0.19
Consensus pattern (158 bp):
AATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCACTGCCACAACCCT
CGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAGCA
TACGGAGCACAACCAGCCGAAGAGGCAG
Found at i:21079046 original size:26 final size:26
Alignment explanation
Indices: 21079008--21079059 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21078998 CCGGTCTGAT
21079008 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
21079034 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
21079060 GCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:21079328 original size:159 final size:158
Alignment explanation
Indices: 21079132--21079535 Score: 433
Period size: 159 Copynumber: 2.6 Consensus size: 158
21079122 ATGTGGGGAC
* * *
21079132 CGGCCCGGTCCCCCCCTGCGTGCTGTCAATCTTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTA
1 CGGCCCGGT-CCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTA
* ** * * * *
21079197 GACTGGGAATGAACTCCGTATGCCTAAGTCAATGCATGAAAC-GAGCGTTCGGGCATTGAGCCAG
65 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAG-GCATGCGGGCATTCAGCCAG
*
21079261 TC-GAAGAGGCATAATGCGCAAGCCAAGGAT
129 TCAGAA-AGGCAGAATGCGCAAGCCAAGGAT
** * * * * **
21079291 CGGCCCGGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCGT-TGTTCCGG-CTGGGGCT
1 CGGCCCGGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAG-TCCGGTCT-GATCT
** *
21079354 TAGACAT-GGAATGAACTCCCCATGCCTAAGCCAACCCACGAAACAGGCATGCGGGCATTCAGTC
63 TAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCATGCGGGCATTCAGCC
* * **
21079418 GGTCAGAAAGGCAGAATGCGCAAGTCGGGGAT
127 AGTCAGAAAGGCAGAATGCGCAAGCCAAGGAT
* *
21079450 CGGCCC-GTCCCCCCTGCGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGATCTGATCTTAG
1 CGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAG
* *
21079514 ACTGGGAATTAAATCCGTATGC
66 ACTGGGAATGAACTCCGTATGC
21079536 TTAGACTGGG
Statistics
Matches: 196, Mismatches: 40, Indels: 20
0.77 0.16 0.08
Matches are distributed among these distances:
156 1 0.01
157 52 0.27
158 18 0.09
159 120 0.61
160 5 0.03
ACGTcount: A:0.21, C:0.32, G:0.26, T:0.20
Consensus pattern (158 bp):
CGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAG
ACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCATGCGGGCATTCAGCCAGTC
AGAAAGGCAGAATGCGCAAGCCAAGGAT
Found at i:21079538 original size:26 final size:26
Alignment explanation
Indices: 21079509--21079561 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21079499 CCGATCTGAT
*
21079509 CTTAGACTGGGAATTAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* *
21079535 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
21079561 C
1 C
21079562 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:21080551 original size:26 final size:26
Alignment explanation
Indices: 21080522--21080574 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21080512 CCGATCTGAT
21080522 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
21080548 CTTAGACATGTAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21080574 C
1 C
21080575 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21080835 original size:175 final size:175
Alignment explanation
Indices: 21080521--21080848 Score: 415
Period size: 175 Copynumber: 1.9 Consensus size: 175
21080511 TCCGATCTGA
* * * * **
21080521 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGTAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGATTAGACATGGAATAAACTCCGTAAGCCTAAGCCAAAA
* * * * *
21080586 CATGAAACGAGAGTGCGGGAGCTTAGTCGACCGGAGAGGCAAAATGCACAAGCCAAGGATCGGCT
66 CACGAAACAAGAGTGCGAGAGCTCAGTCGACCGGAGAGGCAAAATGCACAAGCCAAGGATCGGCC
* *
21080651 TGGTCCCCCTCTGCATGCTGTCGATCCTATTGTCGTGGCTCAAAC
131 CGATCCCCCTCTGCATGCTGTCGATCCTATTGTCGTGGCTCAAAC
*
21080696 TCTTAGACTGGGAATGAACTCTGTATGATTAGACATGGAATAAACTCCGTAAGCCTAAGCCAAAA
1 TCTTAGACTGGGAATGAACTCCGTATGATTAGACATGGAATAAACTCCGTAAGCCTAAGCCAAAA
* * ** * * * *** *
21080761 CACGAAACAAGCGTGCGAGCGCTCAG-CAGGTCGGAGAGGTAGAATGCGCAAGCTGGGGATTGGC
66 CACGAAACAAGAGTGCGAGAGCTCAGTC-GACCGGAGAGGCAAAATGCACAAGCCAAGGATCGGC
21080825 CCGATCCCCCTCTGCATGCTGTCG
130 CCGATCCCCCTCTGCATGCTGTCG
21080849 GTCCCGTTGC
Statistics
Matches: 127, Mismatches: 25, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
174 1 0.01
175 126 0.99
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (175 bp):
TCTTAGACTGGGAATGAACTCCGTATGATTAGACATGGAATAAACTCCGTAAGCCTAAGCCAAAA
CACGAAACAAGAGTGCGAGAGCTCAGTCGACCGGAGAGGCAAAATGCACAAGCCAAGGATCGGCC
CGATCCCCCTCTGCATGCTGTCGATCCTATTGTCGTGGCTCAAAC
Found at i:21081017 original size:26 final size:26
Alignment explanation
Indices: 21080988--21081040 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21080978 CCAGTTCGAT
* *
21080988 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21081014 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21081040 C
1 C
21081041 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21081187 original size:26 final size:26
Alignment explanation
Indices: 21081158--21081210 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21081148 CCGATCTGAT
*
21081158 CTTAGAC-TAGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
21081184 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21081210 C
1 C
21081211 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21081577 original size:158 final size:156
Alignment explanation
Indices: 21081183--21081640 Score: 404
Period size: 158 Copynumber: 2.9 Consensus size: 156
21081173 AACTCTGTAT
*
21081183 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGGGCTCA-
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT-AAATGAGCGTGCGGGCGCTCAG
* * * * * *
21081247 ACCGATCGAGAGGCAGAATGTGCAAGTCGGGGAGTGACCCGGTCCCTCCTGCGTGCTGTCGATCC
65 ACCGCTAGAGAGGCAGAATGCGCAAGTCGGGGA-TGGCCCGGTCCCCCCTGAGTGCTGTCGATCC
* * * *
21081312 TGGTACCGCAACCCTCGATCCGATCTGA
129 CGCTACCACAACCCTCGATCCGATCGGA
* ** * * * *
21081340 TCTTAGAC-TGGGAATGAACTTTGTATGCCTAAGTCAACCCACTAAATGAGCGTTCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA-TAAATGAGCGTGCGGGCGCTCA
* * * * * * **
21081404 GTCGGCCAGAGAGGCATAATGCGCAAGTCGAGGATAGGCCCGGTCCCCCTCTGAGTGTTGTCTTT
64 GACCGCTAGAGAGGCAGAATGCGCAAGTCGGGGAT-GGCCCGGTCCCCC-CTGAGTGCTGTCGAT
* * * * *
21081469 CCCGCTGCCACAACCCTCGGTTCGGT-GGG
127 CCCGCTACCACAACCCTCGATCCGATCGGA
* * *
21081498 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT-AAATGAGCGTGCGGGCGCTCAG
* * * * * * *
21081563 CCCGCTGGAAAGGCAGAATGCGTAAG-CTGGGGATCGGTCCGGTCCCCCCT-ACGTGCTGCCAAT
65 ACCGCTAGAGAGGCAGAATGCGCAAGTC-GGGGAT-GGCCCGGTCCCCCCTGA-GTGCTGTCGAT
* *
21081626 CCTGCTACCGCAACC
127 CCCGCTACCACAACC
21081641 TTCGGTCCAT
Statistics
Matches: 234, Mismatches: 58, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
156 2 0.01
157 76 0.32
158 125 0.53
159 31 0.13
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.21
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAATGAGCGTGCGGGCGCTCAGA
CCGCTAGAGAGGCAGAATGCGCAAGTCGGGGATGGCCCGGTCCCCCCTGAGTGCTGTCGATCCCG
CTACCACAACCCTCGATCCGATCGGA
Found at i:21081895 original size:26 final size:26
Alignment explanation
Indices: 21081864--21081916 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21081854 CCGGTCTGAT
21081864 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
21081890 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21081916 C
1 C
21081917 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21082368 original size:158 final size:156
Alignment explanation
Indices: 21081890--21082389 Score: 445
Period size: 158 Copynumber: 3.2 Consensus size: 156
21081880 ACTCCGTATG
* * * *
21081890 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTTCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
* * * * * *
21081954 CAGGC-CGAAGAGGTAGAATGTGCAA-TCAGGGACCGGCTCGATCCCCCCTGCATGCTGTCGATC
65 C-GGCTAG-AGAGGTAGAATGCGCAAGTCGGGGATCGACTCGATCCCCCCTGCGTGCTGTCGATC
** * * *
21082017 CTGCTGCTGTAACCCTCGATCCGATCCGAT
128 CTGCTGC-ACAACCCTCGGTCCGGTCTGAT
* * * * ** * * *
21082047 CTTAGACTGGGAATGAACTCCATTTGTCAAAGTTAACCCACGAAATGAGCGTTCGGGTGTTGAGC
1 CTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
* * * * * * * *
21082112 CGATCGGAGAGGCATAATACGCAAGTCGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCC
66 GGCT-AGAGAGGTAGAATGCGCAAGTCGGGGATCGACTCGATCCCCC-CTGCGTGCTGTCGATCC
* * * * *
21082177 CGCTGCCACATCACTCGGTCCAG-CT-AGG
129 TGCTG-CACAACCCTCGGTCCGGTCTGA-T
* * *
21082205 GTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTTCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
* * * * *
21082269 TCGGCTAGAGAGGTAGAATGCACAAGCCGGGGATCGATTCAATCCCTCCTGCGTGCTGTCGATCC
65 -CGGCTAGAGAGGTAGAATGCGCAAGTCGGGGATCGACTCGATCCCCCCTGCGTGCTGTCGATCC
*
21082334 TGCTGTCACAACCCTTGGTCCGGTCTGAT
129 TGCTG-CACAACCCTCGGTCCGGTCTGAT
21082363 CTTAGACTGGGAATGAACTTCATATGC
1 CTTAGACTGGGAATGAACTTCATATGC
21082390 TTAGACTGGA
Statistics
Matches: 261, Mismatches: 70, Indels: 23
0.74 0.20 0.06
Matches are distributed among these distances:
156 2 0.01
157 98 0.38
158 127 0.49
159 33 0.13
160 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
GGCTAGAGAGGTAGAATGCGCAAGTCGGGGATCGACTCGATCCCCCCTGCGTGCTGTCGATCCTG
CTGCACAACCCTCGGTCCGGTCTGAT
Found at i:21082404 original size:26 final size:26
Alignment explanation
Indices: 21082363--21082415 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21082353 CCGGTCTGAT
21082363 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
*
21082389 CTTAGACT-GGAGATGAACTTCGTATG
1 CTTAGACTGGGA-ATGAACTTCATATG
21082415 C
1 C
21082416 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:21082767 original size:26 final size:26
Alignment explanation
Indices: 21082738--21082790 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21082728 CCGGTCTGAT
* *
21082738 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCGGTATG
21082764 CTTAGACAGGGAATGAACTCGGTATG
1 CTTAGACAGGGAATGAACTCGGTATG
21082790 C
1 C
21082791 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCGGTATG
Found at i:21083112 original size:159 final size:158
Alignment explanation
Indices: 21082763--21083265 Score: 487
Period size: 158 Copynumber: 3.2 Consensus size: 158
21082753 AACTCTGTAT
* ** ** * * **
21082763 GCTTAGACAGGGAATGAACTCGGTATGCCTAAGCCAACCCATGAAACGAGTGTGCG-GACACTCA
1 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGAG-TGCTCA
* * * * * * *
21082827 ACTGACCGGAGAGGTAGAATGCGCAAGCTGGAGATCGACCCGATCCCGCCTGCATGCTGTCAATC
65 GCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTGTCAATC
*
21082892 CTGTTGCCGCAACCCTCAGTCCGATCTGA
130 CTGCTGCCGCAACCCTCAGTCCGATCTGA
* * * * * * *
21082921 TCTTAGACAAGGACTGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGAGTGTTGAG
1 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGAGTGCTCAG
* *
21082986 CCGGTCGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCAGA-
66 CCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCC-CTGCGTGCTGTCA-AT
* * *
21083050 -CTCGCTGCCGTAACCCTCGGTCCGA-CTGGG
129 CCT-GCTGCCGCAACCCTCAGTCCGATCT-GA
* * * *
21083080 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGAGTGCTCAG
* * ** *
21083145 CCGATCGGAGAGGCAGAATGCGTAAG-TCGGGGATCGACCCGATCCCCCCTACGTGCTACCGATC
66 CCGATCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGACCCGATCCCCCCTGCGTGCTGTCAATC
** * * *
21083209 CTATTGTCGCAACCCTC-GTTTCGATTTGA
130 CTGCTGCCGCAACCCTCAG-TCCGATCTGA
* * *
21083238 TCTTAGACTAGGAATGAACTCCATATGC
1 GCTTAGACAAGGAATGAACTCCCTATGC
21083266 TTAGACTGGG
Statistics
Matches: 281, Mismatches: 54, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
157 2 0.01
158 145 0.52
159 133 0.47
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGAGTGCTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTGTCAATCC
TGCTGCCGCAACCCTCAGTCCGATCTGA
Found at i:21083280 original size:26 final size:26
Alignment explanation
Indices: 21083239--21083291 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21083229 TCGATTTGAT
21083239 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
21083265 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
21083291 C
1 C
21083292 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:21083499 original size:26 final size:26
Alignment explanation
Indices: 21083448--21083500 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21083438 CCGGTCTAAT
*
21083448 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21083474 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21083500 C
1 C
21083501 CTAAGCCACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21083743 original size:709 final size:710
Alignment explanation
Indices: 21082693--21084010 Score: 1703
Period size: 709 Copynumber: 1.9 Consensus size: 710
21082683 CGTGCTGTCA
* *
21082693 ATCCTGCTGCTGGTCCTACTACCTCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTC
1 ATCCTGCTGCTGGTCCTACTACCACAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTC
* *
21082758 TGTATGCTTAGACAGGGAATGAACTCGGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGACA
66 TGTATGCTTAGACAGGGAATGAACTCGGTATGCCTAAGCCAACCCATGAAACGAGCGAGCGGACA
* * * * *
21082823 CTCAACTGACCGGAGAGGTAGAATGCGCAAGCTGGAGATCGACCCGATCCCGCCTGCATGCTGTC
131 CGCAACCGACCGAAAAGGTAGAATGCGCAAGCTGGAGATCGACCCGATCCCCCCTGCATGCTGTC
*** * * * * *
21082888 AATCCTGTTGCCGCAACCCTCAGTCCGATCTGATCTTAGACAAGGACTGAACTCCGTATGCCTAA
196 AATCCTACAGCCACAACCCTCAGTCCGATCCGATCTTAAACAAGGAATGAACTCCATATGCCTAA
* * * * * * **
21082953 GTCAACCCACGAAACGAGCGTACGAGTGTTGAGCCGGTCGGAGAGGCATAATGCGCAAGCTGGGG
261 GTCAACCCACGAAACAAGCGTACGAGCGCTGAGCAGGTCGAAGAGGCATAATGCACAAGCCAGGG
* * * * ** * * *
21083018 ATCGACCCGATCCCCCTCTGCGTGCTGTCAGACTCGCTGCCGTAACCCTCGGTCCGACTGGGGCT
326 ATAGACCCGATCCCCCTCTACGTGCTGCCAGACTCGCTACCACAACCCTCAGTCCGACTAGGGCA
* *
21083083 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAGCCG
391 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAACCG
* * * * * *
21083148 ATCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTACCGATCCTAT
456 ACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGAACCGATCCCCCCTACGTGCTACCGATCCTAC
* * * *
21083213 TGTCGCAACCCTCGTTTCGATTTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGA
521 TATCGCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGA
21083278 TGAACTCCGTATGCCTAAGTCAACTCATGAAACGAGCGTGTGGGCACTCAGTCGACCGAAGAGGT
586 TGAACTCCGTATGCCTAAGTCAACTCATGAAACGAGCGTGTGGGCACTCAGTCGACCGAAGAGGT
21083343 TGACCGGAGAGGCAGAATGTGCAAGTTGGGGATCAGCCCGGGCCCCCTTATGTGCTACCG
651 TGACCGGAGAGGCAGAATGTGCAAGTTGGGGATCAGCCCGGGCCCCCTTATGTGCTACCG
* * *
21083403 ATCCTGCTGCTGGTCCTGCTATCACAACCCTTGATCCGGTCTAATCTTAGACTGGGAATGAACTC
1 ATCCTGCTGCTGGTCCTACTACCACAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACT-
* *
21083468 CT-TATGCTTAGACATGGAATGAACTTC-GTATGCCTAAGCC-ACCCATGAAACGAGCGAGCGGG
65 CTGTATGCTTAGACAGGGAATGAAC-TCGGTATGCCTAAGCCAACCCATGAAACGAGCGAGCGGA
* * ** * * **
21083530 CGCGCAGCCGGTCGAAAAGGTAGAATGCGCAAGCTGGGGA-CTGACCCGGTCCCCCCTGTGTGCT
129 CACGCAACCGACCGAAAAGGTAGAATGCGCAAGCTGGAGATC-GACCCGATCCCCCCTGCATGCT
** * * **
21083594 GTTTATCCTACAGTCACAACCCTCGGTCC-AGTCCGATCTTAAACTGGGAATGAACTCCATATGC
193 GTCAATCCTACAGCCACAACCCTCAGTCCGA-TCCGATCTTAAACAAGGAATGAACTCCATATGC
* * * * * *
21083658 CTAAGTCAACCCATGAAACAAGCGTTCGGGCGCTGAGTAGGTTGAAGAGGCATAATGCACATGCC
257 CTAAGTCAACCCACGAAACAAGCGTACGAGCGCTGAGCAGGTCGAAGAGGCATAATGCACAAGCC
* * * * * * *
21083723 AGGGATTAG-CTCGGTCCCCCTCTACGTGCTGCCGGTCTCGCTACCACAATCCTCAGTCTGGCTA
322 AGGGA-TAGACCCGATCCCCCTCTACGTGCTGCCAGACTCGCTACCACAACCCTCAGTCCGACTA
* **
21083787 TGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTC
386 GGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTC
* * * * * * **
21083852 AACCGGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCGAATCGGTTCCCCCTGCGTGCTGTCGAT
451 AACCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGAACCGATCCCCCCTACGTGCTACCGAT
* * **
21083917 CCTACTATCGCAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
516 CCTACTATCGCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACT
*
21083982 GGGGATGAACTCTGTATGCCTAAGTCAAC
581 GGGGATGAACTCCGTATGCCTAAGTCAAC
21084011 CAACGAAATG
Statistics
Matches: 509, Mismatches: 94, Indels: 11
0.83 0.15 0.02
Matches are distributed among these distances:
708 2 0.00
709 408 0.80
710 95 0.19
711 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (710 bp):
ATCCTGCTGCTGGTCCTACTACCACAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTC
TGTATGCTTAGACAGGGAATGAACTCGGTATGCCTAAGCCAACCCATGAAACGAGCGAGCGGACA
CGCAACCGACCGAAAAGGTAGAATGCGCAAGCTGGAGATCGACCCGATCCCCCCTGCATGCTGTC
AATCCTACAGCCACAACCCTCAGTCCGATCCGATCTTAAACAAGGAATGAACTCCATATGCCTAA
GTCAACCCACGAAACAAGCGTACGAGCGCTGAGCAGGTCGAAGAGGCATAATGCACAAGCCAGGG
ATAGACCCGATCCCCCTCTACGTGCTGCCAGACTCGCTACCACAACCCTCAGTCCGACTAGGGCA
TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAACCG
ACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGAACCGATCCCCCCTACGTGCTACCGATCCTAC
TATCGCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGA
TGAACTCCGTATGCCTAAGTCAACTCATGAAACGAGCGTGTGGGCACTCAGTCGACCGAAGAGGT
TGACCGGAGAGGCAGAATGTGCAAGTTGGGGATCAGCCCGGGCCCCCTTATGTGCTACCG
Found at i:21083977 original size:26 final size:26
Alignment explanation
Indices: 21083948--21084000 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21083938 CCGATCTGAT
21083948 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
21083974 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
21084000 C
1 C
21084001 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:21085264 original size:26 final size:26
Alignment explanation
Indices: 21085235--21085287 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21085225 CCGATCTGAT
*
21085235 CTTAGAC-TAGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
21085261 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21085287 C
1 C
21085288 CTAATCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21085675 original size:159 final size:157
Alignment explanation
Indices: 21085260--21085835 Score: 513
Period size: 159 Copynumber: 3.6 Consensus size: 157
21085250 AGCTCCGTAT
* * * *
21085260 GCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGGAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
21085325 CAGGCCGGAGTGGCAGAATGCGCAAGCCAGGGACCGGC-CTGAT-CCCTTCATGCATGATGTCGA
66 CA-GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTC-GATCCCCTTC-TGCATGCTGCCGA
** * * *
21085388 TCCAAG-TGCTTCAACCCTCGGTCCGGTCCA-A
128 TCC--GCTGCCACAACCCTCGGTCC-GACTAGG
* * * * * * * * * * * * * *
21085419 TCTTAGA-TTGGGAATAAACTCCGTATGCCTACGTCAACCCATGAAATGAACGTTCAGGTGTTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * ** * *
21085483 GCCGGCCGGAGAGGCATAACGCGCAAGATGGGGATTGGCTCGATCCCCTTCTGCATGCTACC-AG
65 G-CAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCTTCTGCATGCTGCCGA-
21085547 TCTCGCTGCCACAACCCTCGGTCC-AGCTAGG
128 TC-CGCTGCCACAACCCTCGGTCCGA-CTAGG
*
21085578 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
21085643 CAGCCGGAGAGGCAGAATGCGTCAAGCCGGGGATCGG-TCCAGTCCCCCTCTGCGTGCTGCCGAT
66 CAGCCGGAGAGGCAGAATGCG-CAAGCCGGGGATCGGCTCGA-TCCCCTTCTGCATGCTGCCGAT
* *
21085707 CCCGCTGCCACAACCCTCAGTCCGACTGGG
129 -CCGCTGCCACAACCCTCGGTCCGACTAGG
* * * * *
21085737 GCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACAAAATGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * **
21085802 CCG-GGGAGAGGCAGAATATGCAAGCCGGGGATCG
66 CAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
21085836 ACCCGGTCCC
Statistics
Matches: 334, Mismatches: 68, Indels: 32
0.77 0.16 0.07
Matches are distributed among these distances:
157 14 0.04
158 40 0.12
159 267 0.80
160 13 0.04
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCTTCTGCATGCTGCCGATCC
GCTGCCACAACCCTCGGTCCGACTAGG
Found at i:21085923 original size:156 final size:159
Alignment explanation
Indices: 21085526--21085923 Score: 437
Period size: 159 Copynumber: 2.5 Consensus size: 159
21085516 ATTGGCTCGA
* * * * * *
21085526 TCCCCTTCTGCATGCTACC-AGTCTCGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGG
1 TCCCCCTCTGCGTGCTACCGA-TCCCGCTGCCACAACCCTCAGTCCAACTAGAGCTTAGACATGG
* *
21085590 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCAGCCGGAGAGG
65 AATGAACTCCCTATGCTTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCAGCCGGAGAGG
* **
21085655 CAGAATGCGTCAAGCCGGGGATCGGTCCAG
130 CAGAATACGTCAAGCCGGGGATCGACCCAG
* * * *
21085685 TCCCCCTCTGCGTGCTGCCGATCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGA
1 TCCCCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCTCAGTCCAACTAGAGCTTAGACATGGA
* * * * * *
21085750 ATGAACTCCCTATGCTTAAGCCAACCCACAAAATGGGTGTGCGGGCGCTCAGCCG-GGGAGAGGC
66 ATGAACTCCCTATGCTTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCAGCCGGAGAGGC
* *
21085814 AGAATATG-CAAGCCGGGGATCGACCCGG
131 AGAATACGTCAAGCCGGGGATCGACCCAG
* * * * * * * * *
21085842 TCCCTCT-TGCGTGCTACCGATCCTGTTGCCGCGACCCTCAGTCTAATTAGATCTTAGA-TTGGG
1 TCCCCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCTCAGTCCAACTAGAGCTTAGACAT-GG
**
21085905 AATGAACTCTGTATGCTTA
65 AATGAACTCCCTATGCTTA
21085924 GACTAGGGAT
Statistics
Matches: 201, Mismatches: 36, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
155 1 0.00
156 59 0.29
157 23 0.11
158 14 0.07
159 103 0.51
160 1 0.00
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.20
Consensus pattern (159 bp):
TCCCCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCTCAGTCCAACTAGAGCTTAGACATGGA
ATGAACTCCCTATGCTTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCAGCCGGAGAGGC
AGAATACGTCAAGCCGGGGATCGACCCAG
Found at i:21086131 original size:26 final size:26
Alignment explanation
Indices: 21086093--21086145 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
21086083 CCGGTCTGAT
21086093 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
21086119 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
21086145 C
1 C
21086146 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:21086423 original size:858 final size:856
Alignment explanation
Indices: 21084707--21087085 Score: 2206
Period size: 858 Copynumber: 2.7 Consensus size: 856
21084697 AACTCCGTAT
* * *
21084707 GCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
21084772 CCGGTCGGAGAGGTAGAATGCGCAGGACGGGGATCAACCCGATCCCCCTCTGCGTGTTGCC-AGT
66 -CAGTCGGAGAGGCAGAATGCGCAAGACGGGGATCGACCAG-TCCCCCTCTGCGTGCTGCCGA-T
* * * ** *
21084836 CCCGTTGCCCCAACCCTTGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCC
128 CCCGCTGCCACAACCC-TAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* *
21084901 AACCCACGAAACGGGTGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAA-AGCGCAAGCCAGGGAC
192 AACCCACGAAACGGGTGTGCGGGTGCTCAGCCGA-CGGAGAGGCAGAATA-CGCAAGCCGGGGAT
* * ** * * *
21084965 CGACTCGGTCCCCCCTGTACGCTACCGATCTTGCTGCCGCAACCATCGGTCCT-GTTAGATATTA
255 CGACCCGGTCCCTCCTGTGTGCTACCGATCCTGCTGCCGCAACCCTCGGT-CTAGTTAGATCTTA
** * * ** * * **
21085029 GATTGGGAATGAACTCCATGTGCTTAGACTGGGGAAGAACTTTGTATGCCTAACTCAGCCCACGT
319 GATTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAACTCAACACACAA
* * * * ** *
21085094 AATGATCGTGCGGGTGCTCAGCCGGCCAGAGAGGTCGACCAAAGAGGCAGAATGTGCAAGCTAGG
384 AATGAGCGTACAGGCGCTCA--C-GCC--A-AGGTCG--CAAAGAGGCAGAATGCACAAGCGAGG
* *
21085159 GATCAATCCGATCCCGCCCTGCGTGCTATCGATCCTACTGCTGGTCCTACTGTCGCAACCCTCGA
441 GATCAATCAGAT-CCGCCCTGCGTGCTAGCGATCCTACTGCTGGTCCTACTGTCGCAACCCTCGA
*
21085224 TCCGATCTGATCTTAGACTAGGAATGAGCTCCGTATGCTTAGACATGGAATGAACTCCGTATGCC
505 TCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCC
* * ** *
21085289 TAATCCAACCCACGGAACGAGCGTGCGGGTGCTCAGCAGGCCGGAGTGGCAGAATGCGCAAGCCA
570 TAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCAGGCCGGAGAGGCAGAATGCGCAAGCCA
* ** * * *
21085354 GGGACCGGCCTGATCCCTTCATGCATGATGTCGATCCAAGTGCTTCAACCCTCGGTCCGGTCCAA
635 GGGACCGACCCAATCCCATCATACATGATGTCGATCC-A-TGCTTCAACCCTCGGTCCAGTCCAA
* * ***
21085419 TCTTAGATTGGGAATAAACTCCGTATGCCTACGTCAACCCATGAAATGAACGTTCAGGTGTTGAG
698 TCTTAGATTGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTTCAGGCACTGAG
* * * * *
21085484 CCGGCCGGAGAGGCATAACGCGCAAGATGGGGATTGGCTCGATCCCCTTCTGCATGCTACCAGTC
763 CCGACCGGAGAGGCATAACGCGCAAGATGAGGATCGACCCGATCCCCTTCTGCATGCTACCAGTC
*
21085549 TCGCTGCCACAACCCTCGGTCCAGCTAGG
828 TCACTGCCACAACCCTCGGTCCAGCTAGG
* *
21085578 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
21085643 CAGCCGGAGAGGCAGAATGCGTCAAGCCGGGGATCGGTCCAGTCCCCCTCTGCGTGCTGCCGATC
66 CAGTCGGAGAGGCAGAATGCG-CAAGACGGGGATC-GACCAGTCCCCCTCTGCGTGCTGCCGATC
*
21085708 CCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCTTAAGCCA
129 CCGCTGCCACAACCCT-AGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * *
21085773 ACCCACAAAATGGGTGTGCGGGCGCTCAGCCG-GGGAGAGGCAGAATATGCAAGCCGGGGATCGA
193 ACCCACGAAACGGGTGTGCGGGTGCTCAGCCGACGGAGAGGCAGAATACGCAAGCCGGGGATCGA
* * * * * *
21085837 CCCGGTCCCTCTTGCGTGCTACCGATCCTGTTGCCGCGACCCTCAGTCTAATTAGATCTTAGATT
258 CCCGGTCCCTCCTGTGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTAGTTAGATCTTAGATT
* * **
21085902 GGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCTTATTTTTCAACACACAAAA
323 GGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTA--ACTCAACACACAAAA
* * * ** *
21085967 TGAGCGTACAGGCGCTCA-G-C-TGGTCG-GAA-AGGCAGAATGCACGAGCCGA-GGATCGGCTT
386 TGAGCGTACAGGCGCTCACGCCAAGGTCGCAAAGAGGCAGAATGCACAAG-CGAGGGATC-AATC
* * * *
21086026 AG-T-CGCCCTTTGCGTGCT-GCAGATCCTACTTCTGGTCCTGCTG-CTGCAACCCTCGGTCCGG
449 AGATCCGCCC--TGCGTGCTAGC-GATCCTACTGCTGGTCCTACTGTC-GCAACCCTCGATCCGA
* * *
21086087 TCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGC
510 TCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * * * *
21086152 CAACCCACGAAATGAGCGTGTGGGCACTCAGTC-GGTCGGAGAGGTAGAATGCGCAAGCCGGGGA
575 CAACCCACGAAACGAGCGTGCGGGCACTCAG-CAGGCCGGAGAGGCAGAATGCGCAAGCCAGGGA
* * * * * *
21086216 CCGACCCAATCCCATCCTACGTGCTGTCGATCC-TGCTATCGCAACCCTTGGTCTAGTCCGATCT
639 CCGACCCAATCCCATCATACATGATGTCGATCCATGCT-T--CAACCCTCGGTCCAGTCCAATCT
* *
21086280 TAGATTGGGAA-AGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTC-GGCCACTGAGT
701 TAGATTGGGAATA-AACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTTCAGG-CACTGAGC
* * ** * * ** * *
21086343 CGATCGGAGAGGCATAATGCGTGAG-TCGAGGATCGACCCGGTCCCTTTCTGTGTTCTGCCAGTC
764 CGACCGGAGAGGCATAACGCGCAAGAT-GAGGATCGACCCGATCCCCTTCTGCATGCTACCAGTC
* * * * * *
21086407 -CTATTGCCATAACCCTCGGTTCGGTTGGG
828 TC-ACTGCCACAACCCTCGGTCCAGCTAGG
* * * *
21086436 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACGCACAAAACGAGCGTGTGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * * *
21086501 CCGATCAGAGA-GCTAGAACGCGAAAGTCGGGGATCAGCCCTA-TCCCTCTCTGTGTGCTACTGG
66 CAG-TCGGAGAGGC-AGAATGCGCAAGACGGGGATC-GACC-AGTCCCCCTCTGCGTGCTGCCGA
* * * * *
21086564 TCCCGCTGCCACAACCCTAGGTCCGACTGGGGCTTAGACTTGGAATGAACTTCGTATTCCTAAGT
127 TCCCGCTGCCACAACCCTA-GTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * * * * *
21086629 GAACCCATGAAACGGGCGTGCGGATGCTCAGTCGATCGGAGAGACAAAATGCGCAAGCCGGGGAT
191 CAACCCACGAAACGGGTGTGCGGGTGCTCAGCCGA-CGGAGAGGCAGAATACGCAAGCCGGGGAT
* * *** * *
21086694 CGGCCCGATCCCTCCTGTGTGCTGTTGATCCTGCTGCCGTAACCCTCGGT-TCAGTTCGATCTTA
255 CGACCCGGTCCCTCCTGTGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCT-AGTTAGATCTTA
* * * * *
21086758 GACTGGGAATGAACTCTGTATGCTTGGACTGGGGATGAACGT-CATATGCCTAAGTCAACCCA-A
319 GATTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAAC-TCCGTATGCCTAACTCAACACACA
* * * * * * ** *
21086821 GAAACGAGCGTGC-GGCCACTCAACCGGCCAGAGAGGCCAGTCGAAGAGGTAGAATGCGTAAGCT
383 -AAATGAGCGTACAGG-CGCTC-A-C-GCC--A-AGGTC-G-CAAAGAGGCAGAATGCACAAGCG
*** * * * * ** * *
21086885 AGGGATCGGCCCGGTCC-CTCCTGCGTGAT-GCAGATCCTGCTGCTGGTCCTGTTGCCGCAACCT
438 AGGGATCAATCAGATCCGC-CCTGCGTGCTAGC-GATCCTACTGCTGGTCCTACTGTCGCAACCC
* * **
21086948 TCGATCC-AGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTTGT
501 TCGATCCGA-TCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGT
* * ** * * * * *
21087012 ATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGTTCAACCGGCCAGAAAGGCAGAATGCACA
565 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCAGGCCGGAGAGGCAGAATGCGCA
*
21087077 GGCCAGGGA
630 AGCCAGGGA
21087086 TCGGTTCGAT
Statistics
Matches: 1232, Mismatches: 224, Indels: 105
0.79 0.14 0.07
Matches are distributed among these distances:
855 4 0.00
856 6 0.00
857 11 0.01
858 533 0.43
859 22 0.02
860 118 0.10
861 1 0.00
862 6 0.00
863 1 0.00
866 1 0.00
867 4 0.00
868 3 0.00
869 116 0.09
870 180 0.15
871 219 0.18
872 7 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (856 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CAGTCGGAGAGGCAGAATGCGCAAGACGGGGATCGACCAGTCCCCCTCTGCGTGCTGCCGATCCC
GCTGCCACAACCCTAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGGGTGTGCGGGTGCTCAGCCGACGGAGAGGCAGAATACGCAAGCCGGGGATCGACCC
GGTCCCTCCTGTGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTAGTTAGATCTTAGATTGGG
AATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAACTCAACACACAAAATGAGC
GTACAGGCGCTCACGCCAAGGTCGCAAAGAGGCAGAATGCACAAGCGAGGGATCAATCAGATCCG
CCCTGCGTGCTAGCGATCCTACTGCTGGTCCTACTGTCGCAACCCTCGATCCGATCTGATCTTAG
ACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
ACGAGCGTGCGGGCACTCAGCAGGCCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCAATCC
CATCATACATGATGTCGATCCATGCTTCAACCCTCGGTCCAGTCCAATCTTAGATTGGGAATAAA
CTCCGTATGCCTAAGTCAACCCATGAAACGAACGTTCAGGCACTGAGCCGACCGGAGAGGCATAA
CGCGCAAGATGAGGATCGACCCGATCCCCTTCTGCATGCTACCAGTCTCACTGCCACAACCCTCG
GTCCAGCTAGG
Found at i:21087183 original size:26 final size:26
Alignment explanation
Indices: 21087147--21087199 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21087137 CCGGTCCAAT
*
21087147 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21087173 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21087199 C
1 C
21087200 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21088176 original size:159 final size:158
Alignment explanation
Indices: 21087852--21088191 Score: 341
Period size: 159 Copynumber: 2.1 Consensus size: 158
21087842 GTGGCTCAAA
* * *
21087852 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCTATGAAACGAGCGTACGGGCGCTCA
1 ATCTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGCACGGGCGCTCA
* * * * * *
21087917 GTCGACCGGAGAGGCAGAATACGCAAGCTGGGGATCGTCCCGGTCCCCCTCTGTGTGCTGTTGGT
66 GCCGACCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGTGTGCTGTCGAT
* ** *
21087982 CCCGCTCCCATAACTTTCTGTCTGGCTGG
131 CCCGCTCCCACAACCCTCTGTCTGCCT-G
** * * *
21088011 GGCTTAGAC-ATGGACTGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGCACGGGCGTTC
1 ATCTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGCACGGGCGCTC
* *
21088075 AGCCGACCGGAGAGGCATAATGA-GCAAGCCGAGGATCGGCCTGGTCCCCC-CT-TGCATGCTGT
65 AGCCGACCGGAGAGGCAGAAT-ACGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGTG--TGCTGT
* * *
21088137 CGATCCTGCTGCCGCAACCCTC-GATCTGATCCT-
127 CGATCCCGCTCCCACAACCCTCTG-TCTG--CCTG
* *
21088170 ATCTTAGGCTGGGAATGAACTC
1 ATCTTAGACTAGGAATGAACTC
21088192 TATGTGCTTA
Statistics
Matches: 145, Mismatches: 28, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
157 2 0.01
158 4 0.03
159 136 0.94
160 1 0.01
161 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.21
Consensus pattern (158 bp):
ATCTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGCACGGGCGCTCA
GCCGACCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGTGTGCTGTCGAT
CCCGCTCCCACAACCCTCTGTCTGCCTG
Found at i:21088481 original size:343 final size:344
Alignment explanation
Indices: 21087854--21088505 Score: 756
Period size: 343 Copynumber: 1.9 Consensus size: 344
21087844 GGCTCAAAAT
* * *
21087854 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCTATGAAACGAGCGTACGGGCGCTCAGT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTACGAGCGCTCAGT
* * ** ***
21087919 CGACCGGAGAGGCAGAATACGCAAGCTGGGGATCGTCCCGGTCCCCCTCTGTGTGCTGTTGGTCC
66 CGACCGGAGAGGCAGAATACGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCATGCTGCCAGTCC
** * * *
21087984 CGCTCCCATAACTTTCTGTCTGGCTGGGGCTTAGACATGGACTGAACTCCCTATGCCTAAGCCAA
131 CGCTCCCATAACCCTCTGTCCGGCTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* ** * * * * *
21088049 CCCATGAAACGGGCGCACGGGCGTTCAGCCGACCGGAGAGGCATAATGAGCAAGCCGAGGATCGG
196 CCCACGAAACCAGCACACGGGCCTTCAGCCGACCGGAAAGGCAGAATGAGCAAGCCGAGGATCAG
* * * * *
21088114 CCTGGTCCCCCCTTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGATCCTATCTTAGGC
261 CCCGATCCCCCCTTGCATGCTGTCGATCCCGCTACCACAACCCTCGATCTGATCCTATCTTAGGC
21088179 TGGGAATGAACTCTATGTG
326 TGGGAATGAACTCTATGTG
* * * * * * *
21088198 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAGTGTTCGATCGTTGAGT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTACGAGCGCTCAGT
* * * * *
21088263 CGGCTGGAGAGGCATAATGCG-AAGCCGGGGATTGACCCGGTCCCCCTCTGCATGCTGCCAGTCC
66 CGACCGGAGAGGCAGAATACGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCATGCTGCCAGTCC
* * * * * *
21088327 TGTTGCCATAACCCTC-GATCCGGTTGGGACTTAGACATGGAATGAACTTCGTATGCCTAAGCCA
131 CGCTCCCATAACCCTCTG-TCCGGCTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
** * *
21088391 ACCCACGAAACCAGCATGCGGGCACTT-AGCCGATCGGAAAGGCAGAAT-ACGCAAGCTGAGGAT
195 ACCCACGAAACCAGCACACGGGC-CTTCAGCCGACCGGAAAGGCAGAATGA-GCAAGCCGAGGAT
* * *
21088454 CAGCCCGAT-CCCCTTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTCGATC
258 CAGCCCGATCCCCCCT-TGCATGCTGTCGATCCCGCTACCACAACCCTCGATC
21088506 CGGTTGGGGC
Statistics
Matches: 251, Mismatches: 53, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
342 7 0.03
343 170 0.68
344 74 0.29
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (344 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTACGAGCGCTCAGT
CGACCGGAGAGGCAGAATACGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCATGCTGCCAGTCC
CGCTCCCATAACCCTCTGTCCGGCTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACCAGCACACGGGCCTTCAGCCGACCGGAAAGGCAGAATGAGCAAGCCGAGGATCAG
CCCGATCCCCCCTTGCATGCTGTCGATCCCGCTACCACAACCCTCGATCTGATCCTATCTTAGGC
TGGGAATGAACTCTATGTG
Found at i:21088709 original size:26 final size:26
Alignment explanation
Indices: 21088673--21088725 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21088663 CTGGTTCGAT
21088673 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21088699 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21088725 C
1 C
21088726 CTAATTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21089081 original size:26 final size:26
Alignment explanation
Indices: 21089052--21089102 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
21089042 CAGTCCGATC
21089052 TTAGACTGGGAATGAACTCCATATGG
1 TTAGACTGGGAATGAACTCCATATGG
* * *
21089078 TTAGATTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
21089103 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:21089801 original size:26 final size:26
Alignment explanation
Indices: 21089763--21089841 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
21089753 GGCTCAAAAT
21089763 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
*
21089789 CTTAGACATGGAATGAACTCTATATG
1 CTTAGACATGGAATGAACTCTGTATG
*
21089815 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCTGTATG
21089841 C
1 C
21089842 CTAAGCCAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 48 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:21090015 original size:26 final size:26
Alignment explanation
Indices: 21089975--21090026 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
21089965 TGGTCTGATA
21089975 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
21090001 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
21090027 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:21090746 original size:26 final size:26
Alignment explanation
Indices: 21090708--21090760 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21090698 TGATTCAAAT
21090708 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21090734 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
21090760 C
1 C
21090761 CTTAAGCCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21090924 original size:26 final size:26
Alignment explanation
Indices: 21090895--21090946 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
21090885 CGGTCTAATA
*
21090895 TTAGGCTGGAAATGAACTCCGTATGC
1 TTAGACTGGAAATGAACTCCGTATGC
** *
21090921 TTAGACTGGGGATGAACTTCGTATGC
1 TTAGACTGGAAATGAACTCCGTATGC
21090947 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGAAATGAACTCCGTATGC
Found at i:21091151 original size:920 final size:917
Alignment explanation
Indices: 21088867--21091876 Score: 4627
Period size: 920 Copynumber: 3.3 Consensus size: 917
21088857 GTCCTGTCTG
* * * *
21088867 ATCTTAGATTGGGAATGAACTCTATATGCTTAGACATTGAATGAACTCTGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * *
21088932 CTACGAAACGAGCGTGCGGGTGCTCTA-CCAACCGGAGACGCAGAATGCATAAGCCAGGGATCG-
66 CCACGAAACGAGCGTGTGGGCGCTC-AGCCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCGA
* * ** * * * *
21088995 CCCTGGTC--CCCCTGCATGC-ATCGATCCTACTGCCGTAACCCT-C-GATCCAGTCCGATCTTA
130 CCC-GGTCTACCCCTGCGTGCTATCGATCCTACTACCACAA-CGTGCAG-TCCGGTCTGATATTA
* * *
21089055 GACTGGGAATGAACTCCATATGGTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGG
192 GACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGG
* *
21089120 AACGAGCGTACGGGCGCTTAGCCGACCAGAGAGGCAGGATGCGCAAGCCGAGGATCGAACGGGTG
257 AACGAGCGTGCGGGCGCTTAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGAACGGGTG
**
21089185 GTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTCATAAAT
322 GTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAAT
* *
21089250 TCATACAATATTCCCCTAAGCCTTCATGTGAAGTTTTGTGGCAAGGTGACCCATTTTCTATTTTT
387 TCATACAATGTTCCCCTAAGCCTTCATGTGAAGTTTTGTGGCAAGGTGACCCGTTTTCTATTTTT
21089315 CACGATTTTTGAAACTTTTTGTGGTTCGGGATATTTTAAAATTTTTTTAGAAAGAGGTTTGTCCC
452 CACGATTTTTGAAACTTTTTGTGGTTCGGGATATTTTAAAATTTTTTTAGAAAGAGGTTTGTCCC
21089380 CAAAATTGGTAGAGGTGATCCCTGTATTTTTGTTGGCATGCACAAAACAATTCAATTAAAAACTC
517 CAAAATTGGTAGAGGTGATCCCTGTATTTTTGTTGGCATGCACAAAACAATTCAATTAAAAACTC
21089445 AAAGTGGAGAAGATTTTGTGACTGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
582 AAAGTGGAGAAGATTTTGTGACTGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
21089510 TAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAG
647 TGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAG
* *
21089575 GGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTATGCACACCCCCT
712 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTACGCACACCCCCT
* * *
21089640 CGG-CCCCCCAATCGCTGGAACCCCTAATGCCGTCGGTTAGGCTCTCCGGCGATGGT---AC---
777 CGGCCCCCCCAATCGCCGGAACCCCCAATGCCGTCGGTTAGGCTCTCCGGCGATGCTCCAACGAT
* *
21089698 -C-C--C---GG-G---C-G-AAAAAAATGTGGCACCAACACATGCCCAAGCTCAGTATGCGCAC
842 GCTCGGCGATGGTGCCCCGGAAAAAAAATGTGGCACCAACACATGCCCGAGCTCAGTATGCACAC
21089750 CGTGGCTCAAA
907 CGTGGCTCAAA
21089761 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTATATGCTTAGACATGG
1 ATCTTAGACTGGGAATG-A------A--C-T---C------TG-------TATGCTTAGACATGG
21089826 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGATCGGAGAG
40 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGATCGGAGAG
* * * *
21089891 GCAGAATGCACAAGCCGGGGATCGGCCCGGTCTACCCCTGCGTGCTGTCGATCCTGCTACCACAA
105 GCAGAATGCACAAGCCAGGGATCGACCCGGTCTACCCCTGCGTGCTATCGATCCTACTACCACAA
*
21089956 CGTGCAGTCTGGTCTGATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCC
170 CGTGCAGTCCGGTCTGATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCC
* *
21090021 GTATGCCTAAGTCAACCCACGGAACAAGCGTGCAGGCGCTTAGCCGACCAGAGAGGCAGGATGCG
235 GTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGCTTAGCCGACCAGAGAGGCAGGATGCG
* * * * *
21090086 CAAGTCGGGGATCGAACGGGTGGTAGGTAGGTTCAAGTACGTCTTCATATTTTTGCCATGCCAAT
300 CAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAAT
*
21090151 GCCGTTTTTATGGCTTGTAAATTCATACAATGTTCCCCTAAGCCTTCATGTGAAGTTTTGTGGCA
365 GCCATTTTTATGGCTTGTAAATTCATACAATGTTCCCCTAAGCCTTCATGTGAAGTTTTGTGGCA
* **
21090216 AGGTGACCTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTCTTTCGGGATATTTTAAAATT
430 AGGTGACCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATATTTTAAAATT
*
21090281 TTTTTAGAAAGAGGTTTGTCCCCAAATTTGGTAGAGGTGATCCCTGTATTTTTGTTGGCATGCAC
495 TTTTTAGAAAGAGGTTTGTCCCCAAAATTGGTAGAGGTGATCCCTGTATTTTTGTTGGCATGCAC
21090346 AAAACAATTCAATTAAAAACTCAAAGTGGAGAAGATTTTGTGACTGTTTGAAAAAAGTGTCCCCA
560 AAAACAATTCAATTAAAAACTCAAAGTGGAGAAGATTTTGTGACTGTTTGAAAAAAGTGTCCCCA
*
21090411 TTTCAGACACTTTAATGGCTACTGGCAGTAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTG
625 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTG
*
21090476 TGAGCTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGT
690 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGT
* * *
21090541 ACATCATGTACGTACACCCCCTCGGCCCCCCCAATCACCGGAACCCCCAATGCCGTTGGTTAGGC
755 ACATCATGTACGCACACCCCCTCGGCCCCCCCAATCGCCGGAACCCCCAATGCCGTCGGTTAGGC
*
21090606 TCTCCGACGATGCTCCAACGATGCTCTGGCGATGGTGCCCCGGCCAAAAAAAATGTGGCACCAAC
820 TCTCCGGCGATGCTCCAACGATGCTC-GGCGATGGTGCCCCGG--AAAAAAAATGTGGCACCAAC
**
21090671 ACATGCCCGAGCTCAGTATGCACACCGTGATTC-AA
882 ACATGCCCGAGCTCAGTATGCACACCGTGGCTCAAA
* *
21090706 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTTAAGCCAA
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCC-TAAGCCAA
* *
21090771 CCCACGAAACGAGCGTGTGGGCGCTCAGCCGATCGGAGAGGTAGAATGCGCAAGCCAGGGATCGA
65 CCCACGAAACGAGCGTGTGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCGA
* * * *
21090836 CCCGGTCTACCCCTGCGTGCTATCGATCCTGCTACCACAACGTGTAGTCCGGTCTAATATTAGGC
130 CCCGGTCTACCCCTGCGTGCTATCGATCCTACTACCACAACGTGCAGTCCGGTCTGATATTAGAC
* *
21090901 TGGAAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGGAAC
195 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGGAAC
* *
21090966 GAGCGTGCGGGTGCTTAGCCGACCAAAGAGGCAGGATGCGCAAGCCGGGGATCGAACGGGTGGTA
260 GAGCGTGCGGGCGCTTAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGAACGGGTGGTA
21091031 GGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
325 GGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
21091096 TACAATGTTCCCCTAAGCCTTCATGTGAAGTTTTGTGGCAAGGTGACCCGTTTTCTATTTTTCAC
390 TACAATGTTCCCCTAAGCCTTCATGTGAAGTTTTGTGGCAAGGTGACCCGTTTTCTATTTTTCAC
* *
21091161 GATATTTGAAACTTTTTGTGGTTCGAGATATTTTAAAATTTTTTTAGAAAGAGGTTTGTCCCCAA
455 GATTTTTGAAACTTTTTGTGGTTCGGGATATTTTAAAATTTTTTTAGAAAGAGGTTTGTCCCCAA
* * *
21091226 AATTGGTAGAGGTGATCCCTGTATTTTTGTTGGCATCCATAAAACAATTCAATTAAAAACTCGAA
520 AATTGGTAGAGGTGATCCCTGTATTTTTGTTGGCATGCACAAAACAATTCAATTAAAAACTCAAA
21091291 GTGGAGAAGATTTTGTGACTGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
585 GTGGAGAAGATTTTGTGACTGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
21091356 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGA
650 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGA
21091421 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTACGCACACCCCCTCGG
715 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTACGCACACCCCCTCGG
* *
21091486 CCACCCCACTCGCCGGAACCCCCAATGCCGTCGGTTAGGCTCTCCGGCGATGCTCCAACGATGCT
780 CCCCCCCAATCGCCGGAACCCCCAATGCCGTCGGTTAGGCTCTCCGGCGATGCTCCAACGATGCT
* * ** *
21091551 CCGGTGATGGTTCCCCGGGAGAAAAAAATGCAGCACCAACACATGCCCGACCTCAGTATGCACAC
845 -CGGCGATGGTGCCCC-GGA-AAAAAAATGTGGCACCAACACATGCCCGAGCTCAGTATGCACAC
21091616 CGTGGCTCAAA
907 CGTGGCTCAAA
*
21091627 ATCTTAGACTGAGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
21091692 CCACGAAACGAGCATGTGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGAC
66 CCACGAAACGAGCGTGTGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCGAC
* * * *
21091757 CCGATCTACCCCTGCGTGCTGTCGATCCTACTGCCACAACGTACAGTCCGGTCTGATATTAGACT
131 CCGGTCTACCCCTGCGTGCTATCGATCCTACTACCACAACGTGCAGTCCGGTCTGATATTAGACT
*
21091822 GGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
196 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
21091877 TCATGAAATG
Statistics
Matches: 1929, Mismatches: 126, Indels: 96
0.90 0.06 0.04
Matches are distributed among these distances:
894 16 0.01
895 1 0.00
901 1 0.00
903 1 0.00
904 1 0.00
907 1 0.00
913 1 0.00
919 34 0.02
920 1083 0.56
921 61 0.03
922 12 0.01
923 587 0.30
924 48 0.02
926 1 0.00
927 2 0.00
931 1 0.00
932 2 0.00
935 2 0.00
936 1 0.00
938 3 0.00
939 1 0.00
942 1 0.00
943 1 0.00
944 1 0.00
945 18 0.01
946 48 0.02
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (917 bp):
ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGTGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCGAC
CCGGTCTACCCCTGCGTGCTATCGATCCTACTACCACAACGTGCAGTCCGGTCTGATATTAGACT
GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGGAACG
AGCGTGCGGGCGCTTAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGAACGGGTGGTAG
GTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGTTCCCCTAAGCCTTCATGTGAAGTTTTGTGGCAAGGTGACCCGTTTTCTATTTTTCACG
ATTTTTGAAACTTTTTGTGGTTCGGGATATTTTAAAATTTTTTTAGAAAGAGGTTTGTCCCCAAA
ATTGGTAGAGGTGATCCCTGTATTTTTGTTGGCATGCACAAAACAATTCAATTAAAAACTCAAAG
TGGAGAAGATTTTGTGACTGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTACGCACACCCCCTCGGC
CCCCCCAATCGCCGGAACCCCCAATGCCGTCGGTTAGGCTCTCCGGCGATGCTCCAACGATGCTC
GGCGATGGTGCCCCGGAAAAAAAATGTGGCACCAACACATGCCCGAGCTCAGTATGCACACCGTG
GCTCAAA
Found at i:21091668 original size:26 final size:26
Alignment explanation
Indices: 21091629--21091681 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21091619 GGCTCAAAAT
*
21091629 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
21091655 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
21091681 C
1 C
21091682 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:21091844 original size:26 final size:26
Alignment explanation
Indices: 21091815--21091866 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21091805 CGGTCTGATA
*
21091815 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
21091841 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
21091867 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:21092365 original size:158 final size:157
Alignment explanation
Indices: 21092000--21092294 Score: 385
Period size: 157 Copynumber: 1.9 Consensus size: 157
21091990 GGTCTTGCTA
* * * *
21092000 CCACAACCCTTGGTCCGACCGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGATCCGACTGGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * *
21092065 GAAACGAGTGTACAGGTGCTAAGCCGATCGAGGAGGGATAACGCAAGTCAGGGATCGGCCCGATC
66 GAAACGAGCGTACAGGTGATAAGCCGATCGAGGAGGGAGAACGCAAGCCAGGGATCGGCCCGATC
* *
21092130 CCCCTTTGCATACTGCCGGTCTCCCTG
131 CCCCTTTACATACTGCCGATCTCCCTG
* *
21092157 CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGATCCGACTGGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * * * * *
21092222 GAAACGGGCGTACGGGTGATCAGCCGGTCG-GAGAGGTAGAATGCAAAAGCCGGGGATCGGCCCG
66 GAAACGAGCGTACAGGTGATAAGCCGATCGAG-GAGGGAGAACGC--AAGCCAGGGATCGGCCCG
21092286 ATCCCCCTT
128 ATCCCCCTT
21092295 ACGTGCTGCT
Statistics
Matches: 120, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
156 1 0.01
157 94 0.78
159 25 0.21
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (157 bp):
CCACAACCCTCGATCCGACTGGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
GAAACGAGCGTACAGGTGATAAGCCGATCGAGGAGGGAGAACGCAAGCCAGGGATCGGCCCGATC
CCCCTTTACATACTGCCGATCTCCCTG
Found at i:21099098 original size:155 final size:154
Alignment explanation
Indices: 21098616--21099108 Score: 446
Period size: 155 Copynumber: 3.1 Consensus size: 154
21098606 TAGACTGGGG
21098616 ATGAACTCCGTATGCCTAAGTCAACCCACGAAAACGAGCGTGCGGGTTGCTGAGCCGACGAAGA-
1 ATGAACTCCGTATGCCTAAGTCAA-CCACG-AAACGAGCGTGCGGG-TGCTGAGCCGACGAAGAG
* * * * * * *
21098680 GCATAATGCGTAAGCCAGGGATTCGGCCCAGTCCCCCTCTACGTGCTGCCAGTCTCGCTGCCACA
63 GCAT-ATGCGCAAGCCGGGGA-TCGGCCCAGT--CCCTCTGCGTGCTACCGGTCCCACTGCCACA
* *
21098745 ACCCTCGGTCCCAACTGGGGCTTAGACATGGA
124 ACCCTCGAT-CCGACTGGGGCTTAGACATGGA
* * *
21098777 ATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGTGCTTAGCCGACCGGAA-AG
1 ATGAACTCCGTATGCCTAAGTCAACC-ACGAAACGAGCGTGCGGGTGCTGAGCCGA-C-GAAGAG
* * * * * * * * * *
21098841 GTAGACATGCGCAAGTCGGGGATCGGCCTAGTCCCCCTTGCGTGCTA-TGATCCGACTGTCGCAA
63 G--CATATGCGCAAGCCGGGGATCGGCCCAGTCCCTC-TGCGTGCTACCGGTCCCACTGCCACAA
**
21098905 CCCTC-AGTCCGATCT-GATCTTAGAC-TAGGA
125 CCCTCGA-TCCGA-CTGGGGCTTAGACAT-GGA
* * *
21098935 ATGAACTCCGTATGCATAAGTCAACCACGAAACGAGTGTGCGGGCGCTGAGCCGACTGAAGAGGC
1 ATGAACTCCGTATGCCTAAGTCAACCACGAAACGAGCGTGCGGGTGCTGAGCCGAC-GAAGAGGC
* * *
21099000 ATATACACAAGCCGGGGATCGCGCCGA-TCCCTTCTGCGTGCTACCGGTCCCACTGCCACAA-CC
65 ATATGCGCAAGCCGGGGATCG-GCCCAGTCCC-TCTGCGTGCTACCGGTCCCACTGCCACAACCC
*
21099063 TCGATCCGGCTGGGGGCTTAGACATGGA
128 TCGATCCGACT-GGGGCTTAGACATGGA
*
21099091 ATG-ACTCCCTATGCCTAA
1 ATGAACTCCGTATGCCTAA
21099109 AGCCAGACCC
Statistics
Matches: 266, Mismatches: 48, Indels: 42
0.75 0.13 0.12
Matches are distributed among these distances:
154 2 0.01
155 51 0.19
156 36 0.14
157 30 0.11
158 38 0.14
159 31 0.12
160 25 0.09
161 39 0.15
162 13 0.05
163 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (154 bp):
ATGAACTCCGTATGCCTAAGTCAACCACGAAACGAGCGTGCGGGTGCTGAGCCGACGAAGAGGCA
TATGCGCAAGCCGGGGATCGGCCCAGTCCCTCTGCGTGCTACCGGTCCCACTGCCACAACCCTCG
ATCCGACTGGGGCTTAGACATGGA
Found at i:21099796 original size:26 final size:26
Alignment explanation
Indices: 21099767--21099819 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21099757 CCGGTCCAAT
21099767 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
21099793 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21099819 C
1 C
21099820 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21100243 original size:158 final size:157
Alignment explanation
Indices: 21099792--21100283 Score: 589
Period size: 158 Copynumber: 3.1 Consensus size: 157
21099782 AACTCCGTAT
* *
21099792 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * *
21099857 CCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCC-CTGCGTGCTATCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCG-TCCCCTCTGCGTGCTGTCGATCC
* **
21099921 TGCTGTCGCAACCCTCGGTCTGGTCCGA
130 TGCTGCCGCAACCCTCGGTCCAGTCCGA
* * * *
21099949 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCA
* * *
21100013 GCC-GTCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGAT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCC-GT-CCCCTCTGCGTGCTGTCGAT
** * ** *
21100077 CCCACTGCCACAACCCTCGGTCCAGTTGGG
128 CCTGCTGCCGCAACCCTCGGTCCAGTCCGA
* * *
21100107 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * *
21100172 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCTTGTCCCCTCTGCGTGCTGCCGATAC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC-CGTCCCCTCTGCGTGCTGTCGATCC
* * * *
21100237 TGCTGCCGTAACCCTC-GACCCGTTCGA
130 TGCTGCCGCAACCCTCGGTCCAGTCCGA
*
21100264 TCTTAGAC-TGGGAATGAACT
1 GCTTAGACAT-GGAATGAACT
21100284 GTATGCTTAG
Statistics
Matches: 282, Mismatches: 45, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
156 36 0.13
157 88 0.31
158 123 0.44
159 35 0.12
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGTCCCCTCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTCCAGTCCGA
Found at i:21107635 original size:155 final size:154
Alignment explanation
Indices: 21107279--21107636 Score: 361
Period size: 155 Copynumber: 2.3 Consensus size: 154
21107269 AACTCCGTAT
* * * *
21107279 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCGCGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCAG
* **
21107344 CTGGCCGAAGAGGTAGAATGCGCAAGTTGGGGATCGCCTGATCCCCCTGCGTGCTGTCGATCCTA
66 CTGG-CGAAGAGGCAGAATGCGCAAGTCCGGGATCGCCTGATCCCCCTGCGTGCTGTCGATCCTA
***
21107409 CTGTGTAACCCTCGGTCTGGTCTGA
130 CTGCACAACCCTCGGTCTGGTCTGA
* * * * * *
21107434 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACTAGCATGCAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCA
* * * *
21107498 GCTGG-GAAGAGGCATAATGTGTAAG-CCGGGATCG-CTCGATCCCCTTCTGCGTGCTG-CTGGT
65 GCTGGCGAAGAGGCAGAATGCGCAAGTCCGGGATCGCCT-GATCCCC--CTGCGTGCTGTC-GAT
* * *
21107559 CTTGCTGCCACAACCCTCGGT-TCGG-CTGGG
126 CCTACTG-CACAACCCTCGGTCT-GGTCT-GA
* *
21107589 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
21107637 GACGTGCGGC
Statistics
Matches: 164, Mismatches: 30, Indels: 18
0.77 0.14 0.08
Matches are distributed among these distances:
151 2 0.01
152 14 0.09
153 17 0.10
154 21 0.13
155 109 0.66
156 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (154 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCAG
CTGGCGAAGAGGCAGAATGCGCAAGTCCGGGATCGCCTGATCCCCCTGCGTGCTGTCGATCCTAC
TGCACAACCCTCGGTCTGGTCTGA
Found at i:21108144 original size:26 final size:26
Alignment explanation
Indices: 21108115--21108167 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21108105 CTGGTCCGAT
21108115 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
21108141 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21108167 C
1 C
21108168 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21108503 original size:159 final size:157
Alignment explanation
Indices: 21108142--21108634 Score: 546
Period size: 159 Copynumber: 3.1 Consensus size: 157
21108132 CTCCGTATGC
* * ** *
21108142 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC-GAAACGAGCGTACGGAATGC-CAA
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC-CTGAAATGAGCGTGCGG-GCGCTCAG
* * * * * *
21108205 CCGACCGGAGAGGCACAATGCACAAGTCAAGGATTGGCCCGATCCCCCCTGCGTGCTATCGATCC
64 CCGGCCGGAGAGGCACAATGCGCAAGTCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
21108270 TGTTGCCACAACCCTCAGTCCGATGGATC
129 TGCTGCCACAACCCTCGGTCCGATGGATA
* * * *
21108299 TTAGAC-TGGGAATGAACACCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCCTGAAATGAGCGTGCGGGCGCTCAGC
* * * *
21108363 CGGCCAGAGAGGCATAATGCGCAAGTCAGGGATCGGCCCGGTCCCCCTCTGTGTGCTGTCGGTCC
65 CGGCCGGAGAGGCACAATGCGCAAGTCAGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCC
*
21108428 CGCTGCCACAACCCTCGGTCCGACTAGGA-A
129 TGCTGCCACAACCCTCGGTCCGA-T-GGATA
* * *
21108458 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCCTGAAATGGGCGTGCGGGCGCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCCTGAAATGAGCGTGCGGGCGCTCAGCC
* * * * * *
21108523 GGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCTCCCCTGCGTGCTGCCAATCCTG
66 GGCCGGAGAGGCACAATGCGCAAGTCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTG
** * * *
21108588 CTGCTGCAACCCTCGGTCCGGTCTGATC
131 CTGCCACAACCCTCGGTCCGAT-GGATA
21108616 TTAGAC-TGGGAATGAACTC
1 TTAGACAT-GGAATGAACTC
21108635 ATATGCTTAG
Statistics
Matches: 281, Mismatches: 46, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
156 3 0.01
157 93 0.33
158 83 0.30
159 98 0.35
160 4 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCCTGAAATGAGCGTGCGGGCGCTCAGCC
GGCCGGAGAGGCACAATGCGCAAGTCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCACAACCCTCGGTCCGATGGATA
Found at i:21109373 original size:26 final size:26
Alignment explanation
Indices: 21109335--21109386 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21109325 GGCTCAAAAT
21109335 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21109361 CTTAGACAT-GGAATGAAGTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21109387 ACTAAGCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21109855 original size:156 final size:153
Alignment explanation
Indices: 21109361--21109855 Score: 435
Period size: 156 Copynumber: 3.2 Consensus size: 153
21109351 ACTCCGTATG
* * * * * * * * *
21109361 CTTAGACATGGAATGAAGTCTGTATGACTAAGCAAACCCATGAAACGAGCGTGC-AGCGCCCAGC
1 CTTAGAC-TGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCAGC
* * * * * * *
21109425 CAGTCGGAGGGGCAGAATGCGTAAGCCGGGGATTGACCTGGTCCCCCCTGCGTGTTGTCAATCAA
65 CAGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGT-CCCCCTGCGTGCTGTCGATC-C
*
21109490 TCGC-CACAACCCTCAGTCTGGTCTGAT
128 T-GCTCACAACCCTCAGTCTGCTC-GAT
* * * ** * *
21109517 CTTAGACTGGGTATGAACTCTGAATGCCTAAGTCAACCCACGAAACGAGCGTTTGGGCACTGAGC
1 CTTAGACTGGG-ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCAGC
* * * * * *
21109582 C-GACCGAAGAGGCATAATGTGCAAGTCGAGGATCG-CCCGGTCCCCTCTGCGTGCTGTCG-TCC
65 CAG-TCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCC-CTGCGTGCTGTCGATCC
* * **
21109644 TGCTGCCACAACCCTCGGTCTGGCTGGGG
128 TGCT--CACAACCCTCAGTCT-GCTCGAT
* * * *
21109673 CTGAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTCCGGGCGCTCAGC
1 CTTAGAC-TGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCAGC
21109738 CAGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCCTGCGTGCTGTCGATCCTG
65 CAGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCCTGCGTGCTGTCGATCCTG
* *
21109803 CTATCGCAACCCTC-GTCATGTTCGAT
130 C--TCACAACCCTCAGTC-TGCTCGAT
*
21109829 CTTAGACTGGGAGTAAACTCCGTATGC
1 CTTAGACTGGGA-TGAACTCCGTATGC
21109856 TTAGACTGGT
Statistics
Matches: 266, Mismatches: 57, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
153 2 0.01
154 1 0.00
155 13 0.05
156 187 0.70
157 62 0.23
159 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (153 bp):
CTTAGACTGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCAGCC
AGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCCTGCGTGCTGTCGATCCTGC
TCACAACCCTCAGTCTGCTCGAT
Found at i:21109873 original size:26 final size:26
Alignment explanation
Indices: 21109829--21109881 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21109819 CATGTTCGAT
21109829 CTTAGACTGGGAGTAAACTCCGTATG
1 CTTAGACTGGGAGTAAACTCCGTATG
* *
21109855 CTTAGACTGGTGA-TGAACTTCGTATG
1 CTTAGACTGG-GAGTAAACTCCGTATG
21109881 C
1 C
21109882 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAGTAAACTCCGTATG
Found at i:21110742 original size:26 final size:26
Alignment explanation
Indices: 21110691--21110743 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21110681 CCGGTCCGAT
*
21110691 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21110717 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21110743 C
1 C
21110744 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21110998 original size:15 final size:12
Alignment explanation
Indices: 21110967--21110995 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
21110957 CCATCCGGCG
21110967 TGCTGTTGATCC
1 TGCTGTTGATCC
21110979 TGCTGTTGATCC
1 TGCTGTTGATCC
21110991 TGCTG
1 TGCTG
21110996 CTGGTCCTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.24, G:0.28, T:0.41
Consensus pattern (12 bp):
TGCTGTTGATCC
Found at i:21111934 original size:26 final size:26
Alignment explanation
Indices: 21111896--21111948 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21111886 CTGGTTCAAT
*
21111896 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
21111922 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
21111948 C
1 C
21111949 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:21112430 original size:25 final size:26
Alignment explanation
Indices: 21112396--21112446 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21112386 CCGGTCTGAT
21112396 CTTAGACT-GGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21112421 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21112447 AATAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21112770 original size:25 final size:26
Alignment explanation
Indices: 21112736--21112786 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21112726 CCGGTCTGAT
21112736 CTTAGACT-GGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21112761 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21112787 AATAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21112778 original size:340 final size:341
Alignment explanation
Indices: 21112079--21112968 Score: 1450
Period size: 341 Copynumber: 2.6 Consensus size: 341
21112069 TCGGTCTGAT
* * ** *
21112079 CTTAGACTGGGAATGAACTGCGTATGCCTAAGTCAACCCACGAAACGAGCATTTGGGCGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGAATAAGTCAACCCACGAAACGAGCA-TTCGGCGCTGAGC
* * *
21112144 TGGCCGAAAAGGCGTAATGCGTAAGCCGGGGATCGGCCTGATTCCTCTCTGCGTGCTGTCGATCC
65 TGGCCG-AAAGGCATAATGCGTAAGCCGGGGATCGGCCTGATCCCTCTCTACGTGCTGTCGATCC
21112209 CGTTG-CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
129 CGTTGCCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
*
21112273 ACCCACGAAACGGGTGTGCGGATGCTAAGCTGGCTGGAGAGGCAGAATGCGTAAATCGAGGATCG
194 ACCCACGAAACGGGCGTGCGGATGCTAAGCTGGCTGGAGAGGCAGAATGCGTAAATCGAGGATCG
*
21112338 GCTCGATCCCCCCTGCGTGCTACCAAACCTTCTGTTGCAACCCTTGGTCCGGTCTGATCTTAGAC
259 GCTCGATCCCCCCTGCGTGCTACCAAACCTTCTGTTGCAACCCTCGGTCCGGTCTGATCTTAGAC
21112403 TGGAATGAACTCCATATG
324 TGGAATGAACTCCATATG
*
21112421 CTTAGACTGGGGATGAACTCCGTATGAATAAGTCAACCCATGAAACGAGCATTCGGCGCTGAGCT
1 CTTAGACTGGGGATGAACTCCGTATGAATAAGTCAACCCACGAAACGAGCATTCGGCGCTGAGCT
* *
21112486 GGCCGAAAGGCATAATGCGTAAGCTGGGGATCGGCCTAATCCCTCTCTACGTGCTGTCGATCCCG
66 GGCCGAAAGGCATAATGCGTAAGCCGGGGATCGGCCTGATCCCTCTCTACGTGCTGTCGATCCCG
*
21112551 TTGCCCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
131 TTGCCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* *
21112616 CCATGAAACGGGCGTGCGGATGCTAAGCTGGCTGGAGAGGCAGAATGCGTAAGTCGAGGATCGGC
196 CCACGAAACGGGCGTGCGGATGCTAAGCTGGCTGGAGAGGCAGAATGCGTAAATCGAGGATCGGC
21112681 TCGAT-CCCCCTGCGTGCTACCAAACCTTCTGTTGCAACCCTCGGTCCGGTCTGATCTTAGACTG
261 TCGATCCCCCCTGCGTGCTACCAAACCTTCTGTTGCAACCCTCGGTCCGGTCTGATCTTAGACTG
21112745 GAATGAACTCCATATG
326 GAATGAACTCCATATG
* * * *
21112761 CTTAGACTGGGGATGAACTCCGTATGAATAAGTCAACCCACGAAATGAGCATGCATGCACTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGAATAAGTCAACCCACGAAACGAGCATTC-GGCGCTGAGC
*
21112826 TGGCCGAAGAGGCATAATGCGTAAGCCAGGGATCGG-CTCGATCCCTCTCTACGTGCTGTCG-T-
65 TGGCCGAA-AGGCATAATGCGTAAGCCGGGGATCGGCCT-GATCCCTCTCTACGTGCTGTCGATC
* * *
21112888 GC-TTGCAGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
128 CCGTTGC--CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
*
21112952 CCAACCCACAAAACGGG
191 CCAACCCACGAAACGGG
21112969 GCATACGGGC
Statistics
Matches: 512, Mismatches: 30, Indels: 13
0.92 0.05 0.02
Matches are distributed among these distances:
339 4 0.01
340 184 0.36
341 232 0.45
342 92 0.18
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (341 bp):
CTTAGACTGGGGATGAACTCCGTATGAATAAGTCAACCCACGAAACGAGCATTCGGCGCTGAGCT
GGCCGAAAGGCATAATGCGTAAGCCGGGGATCGGCCTGATCCCTCTCTACGTGCTGTCGATCCCG
TTGCCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGGGCGTGCGGATGCTAAGCTGGCTGGAGAGGCAGAATGCGTAAATCGAGGATCGGC
TCGATCCCCCCTGCGTGCTACCAAACCTTCTGTTGCAACCCTCGGTCCGGTCTGATCTTAGACTG
GAATGAACTCCATATG
Found at i:21113071 original size:26 final size:26
Alignment explanation
Indices: 21113030--21113082 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21113020 CCGGTCTGAT
21113030 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21113056 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCATATG
21113082 C
1 C
21113083 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21113440 original size:26 final size:26
Alignment explanation
Indices: 21113411--21113463 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21113401 CCGGTCTGAT
21113411 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
21113437 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21113463 C
1 C
21113464 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21113915 original size:155 final size:156
Alignment explanation
Indices: 21113447--21113925 Score: 412
Period size: 155 Copynumber: 3.1 Consensus size: 156
21113437 CTTAGACATG
* * *
21113447 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGCCGGCCAGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCC-TAAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAGA
* *** * * *
21113512 GGCAGAATGCACAAGTCGGGGATTGGCCCGATCCTCCTGCGTGCTGTCGATCCTGCTACCGCAA-
65 GGCAGAATGCATAAGTCGGGGA-TCAACCGGTCC-CCTGCATGCTGTCGATCCTGCTGCCGCAAC
* *
21113576 CCTCTGTCTGATC-GATCTTAGACTGG--
128 CCTCGGTCCGATCTGATCTTAGACTGGAT
* * * * * * *
21113602 GAATGAACTCCGTATG-CTAAGTC-ACCACAAAAATGAGCGTGCGGGTGTTGAGCCGGTCGAAGA
1 GAATGAACTCCGTATGCCTAAGCCAACC-CTAAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAGA
* * * ** * * * * * *
21113665 GGCATAATGCATAAGCCGGGGGTCCGCTCCAGTCCCCCTCTGCCTGCTGCCGGTCCTGTTGCCAC
65 GGCAGAATGCATAAGTCGGGGAT-C-AACCGGT--CCC-CTGCATGCTGTCGATCCTGCTGCCGC
* ***
21113730 AACCCTCGGTCCGGT-TGGGATTAGAC---AT
125 AACCCTCGGTCCGATCTGATCTTAGACTGGAT
* *
21113758 GAATGAACTCC-TATGCCTAAGCCAACCCTCAAACG-GCGTGCGGGCGCTCAGCCGGCCGGAGAG
1 GAATGAACTCCGTATGCCTAAGCCAACCCTAAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAGAG
* * *
21113821 GCAGAATGCGTAAGTCGGAGATCAACCGGTCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCT
66 GCAGAATGCATAAGTCGGGGATCAACCGGTCCCCTGCATGCTGTCGATCCTGCTGCCGCAACCCT
21113886 C-GTCCGATCTGATCTTAGACTGG--
131 CGGTCCGATCTGATCTTAGACTGGAT
*
21113909 GAATGAACTCCATATGC
1 GAATGAACTCCGTATGC
21113926 TTAGACTAGG
Statistics
Matches: 249, Mismatches: 58, Indels: 37
0.72 0.17 0.11
Matches are distributed among these distances:
149 6 0.02
150 35 0.14
151 14 0.06
152 6 0.02
153 51 0.20
154 11 0.04
155 61 0.24
156 46 0.18
157 19 0.08
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCTAAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAGAG
GCAGAATGCATAAGTCGGGGATCAACCGGTCCCCTGCATGCTGTCGATCCTGCTGCCGCAACCCT
CGGTCCGATCTGATCTTAGACTGGAT
Found at i:21114664 original size:26 final size:25
Alignment explanation
Indices: 21114621--21114672 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
21114611 GGCTCAAAAT
* *
21114621 CTTAGACTGGGATGAACTCTGTATG
1 CTTAGACTGGAATGAACTCCGTATG
21114646 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
21114672 C
1 C
21114673 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Done.