Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 201 of 402
Found at i:21115133 original size:26 final size:26
Alignment explanation
Indices: 21115103--21115155 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21115093 TCAGGTCCAT
21115103 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* * * *
21115129 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
21115155 C
1 C
21115156 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:21116001 original size:25 final size:26
Alignment explanation
Indices: 21115973--21116024 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21115963 CCGATCTGAT
21115973 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21115998 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21116024 C
1 C
21116025 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21123579 original size:159 final size:160
Alignment explanation
Indices: 21123389--21124050 Score: 711
Period size: 159 Copynumber: 4.2 Consensus size: 160
21123379 TAGACTGGGG
* *
21123389 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCCGACCGAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGG
** *
21123454 CATAATGCGTAAGCCAGGGATCGGCCCAGTCCCCCTCTACGTGCTGCCAG-TCTCGCTGCCACAA
66 CATAATGCACAAGCCGGGGATCGGCCCAGTCCCCCTCTACGTGCTGCCAGATCTCGCTGCCACAA
21123518 CCCTCGGTCCAACTGGGGCTTAGACATGGA
131 CCCTCGGTCCAACTGGGGCTTAGACATGGA
* * * *
21123548 ATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGTGCTTAGCCGACCGGAA-AG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACC-GAAGAG
* * * * * * * * *
21123612 GTAGAATGCGCAAGTCGGGGATCGGCCTAGTCCCCCT-TGCGTGCTGTC-GATC-CGACTGTCGC
65 GCATAATGCACAAGCCGGGGATCGGCCCAGTCCCCCTCTACGTGCTGCCAGATCTCG-CTGCCAC
* * **
21123674 AACCCTCAGTCCGATCT-GATCTTAGAC-TAGGA
129 AACCCTCGGTCC-AACTGGGGCTTAGACAT-GGA
* * * *
21123706 ATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGAGCCGACTGAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGG
* * * * * * *
21123771 CATAATACACAAGCCGGGGATCGGCCC-GATCCCCTTCTGCGTGCTACC-GGTCCCACTGCCACA
66 CATAATGCACAAGCCGGGGATCGGCCCAG-TCCCCCTCTACGTGCTGCCAGATCTCGCTGCCACA
* *
21123834 ACCCTCGATCCGACTGGGGCTTAGACATGGA
130 ACCCTCGGTCCAACTGGGGCTTAGACATGGA
* * * * * * *
21123865 ATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGAGCGCTCAGCCGACC-AGAGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGA-AGAG
* * * * * *
21123929 GCAAAATGCACAAGCCGGGGATCAGCCCGGTCCCCC-CTACATGTTG-CAGATCTCGCTACCACA
65 GCATAATGCACAAGCCGGGGATCGGCCCAGTCCCCCTCTACGTGCTGCCAGATCTCGCTGCCACA
***
21123992 ACCCTCGGTCTGGCTGGGGCTTAGACATGGA
130 ACCCTCGGTCCAACTGGGGCTTAGACATGGA
21124023 ATGAACT-CGCTATGCCTAAGCCAACCCA
1 ATGAACTCCG-TATGCCTAAGCCAACCCA
21124051 TAAAACGGGT
Statistics
Matches: 416, Mismatches: 72, Indels: 31
0.80 0.14 0.06
Matches are distributed among these distances:
157 10 0.02
158 191 0.46
159 209 0.50
160 6 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (160 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGG
CATAATGCACAAGCCGGGGATCGGCCCAGTCCCCCTCTACGTGCTGCCAGATCTCGCTGCCACAA
CCCTCGGTCCAACTGGGGCTTAGACATGGA
Found at i:21123964 original size:317 final size:317
Alignment explanation
Indices: 21123378--21123964 Score: 843
Period size: 317 Copynumber: 1.9 Consensus size: 317
21123368 TCGCAACCCT
* * * *
21123378 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCC
1 TTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCC
* ** * *
21123443 GACCGAAGAGGCATAATGCGTAAGCCAGGGATCGGCCCAGTCCCCCTCTACGTGCTGCCAGTCTC
66 GACCGAAGAGGCATAATACACAAGCCAGGGATCGGCCCAGTCCCCCTCTACGTGCTACCAGTCCC
* * *
21123508 GCTGCCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
131 ACTGCCACAACCCTCGATCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * * * * * * *
21123573 CTACGAAATGAGCGTGCGGGTGCTTAGCCGACCGGAAAGGTAGAATGCGCAAGTCGGGGATCGGC
196 CCACGAAATGAGCATGCGAGCGCTCAGCCGACCAGAAAGGCAAAATGCACAAGCCGGGGATCAGC
*
21123638 CTAGTCCCCCTTGCGTGCTGTCGATCCGACTGTCGCAACCCTCAGTCCGATCTGATC
261 CCAGTCCCCCTTGCGTGCTGTCGATCCGACTGTCGCAACCCTCAGTCCGATCTGATC
*
21123695 TTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGAGCC
1 TTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCC
* * * * *
21123760 GACTGAAGAGGCATAATACACAAGCCGGGGATCGGCCC-GATCCCCTTCTGCGTGCTACCGGTCC
66 GACCGAAGAGGCATAATACACAAGCCAGGGATCGGCCCAG-TCCCCCTCTACGTGCTACCAGTCC
*
21123824 CACTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
130 CACTGCCACAACCCTCGATCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * *
21123889 CCCATGAAATGGGCATGCGAGCGCTCAGCCGACCAGAGAGGCAAAATGCACAAGCCGGGGATCAG
195 CCCACGAAATGAGCATGCGAGCGCTCAGCCGACCAGAAAGGCAAAATGCACAAGCCGGGGATCAG
*
21123954 CCCGGTCCCCC
260 CCCAGTCCCCC
21123965 CTACATGTTG
Statistics
Matches: 234, Mismatches: 35, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
316 1 0.00
317 233 1.00
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (317 bp):
TTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCC
GACCGAAGAGGCATAATACACAAGCCAGGGATCGGCCCAGTCCCCCTCTACGTGCTACCAGTCCC
ACTGCCACAACCCTCGATCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAATGAGCATGCGAGCGCTCAGCCGACCAGAAAGGCAAAATGCACAAGCCGGGGATCAGC
CCAGTCCCCCTTGCGTGCTGTCGATCCGACTGTCGCAACCCTCAGTCCGATCTGATC
Found at i:21124017 original size:317 final size:317
Alignment explanation
Indices: 21123378--21124050 Score: 818
Period size: 317 Copynumber: 2.1 Consensus size: 317
21123368 TCGCAACCCT
* * *
21123378 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCC
1 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCC
* ** * *
21123443 GACCGAAGAGGCATAATGCGTAAGCCAGGGATCGGCCCAGTCCCCCTCTACGTGCTGCCAGTCTC
66 GACCGAAGAGGCATAATACACAAGCCAGGGATCGGCCCAGTCCCCCTCTACGTGCTACCAGTCCC
* * *
21123508 GCTGCCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
131 ACTGCCACAACCCTCGATCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * * * * * * *
21123573 CTACGAAATGAGCGTGCGGGTGCTTAGCCGACCGGAAAGGTAGAATGCGCAAGTCGGGGATCGGC
196 CCACGAAATGAGCATGCGAGCGCTCAGCCGACCAGAAAGGCAAAATGCACAAGCCGGGGATCAGC
* * * * ** * * *
21123638 CTAGTCCCCCTTGCGTGCTGTCGATCCGACTGTCGCAACCCTCAGTCCGATCTGATC
261 CCAGTCCCCCCTACATGCTGTCGATCCGACTACCACAACCCTCAGTCCGAGCTGAGC
* *
21123695 TTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGAGCC
1 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCC
* * * * *
21123760 GACTGAAGAGGCATAATACACAAGCCGGGGATCGGCCC-GATCCCCTTCTGCGTGCTACCGGTCC
66 GACCGAAGAGGCATAATACACAAGCCAGGGATCGGCCCAG-TCCCCCTCTACGTGCTACCAGTCC
*
21123824 CACTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
130 CACTGCCACAACCCTCGATCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * *
21123889 CCCATGAAATGGGCATGCGAGCGCTCAGCCGACCAGAGAGGCAAAATGCACAAGCCGGGGATCAG
195 CCCACGAAATGAGCATGCGAGCGCTCAGCCGACCAGAAAGGCAAAATGCACAAGCCGGGGATCAG
* * * * *
21123954 CCCGGTCCCCCCTACATGTTG-CAGATCTCG-CTACCACAACCCTCGGTCTG-GCTGGGGC
260 CCCAGTCCCCCCTACATGCTGTC-GATC-CGACTACCACAACCCTCAGTCCGAGCT-GAGC
*
21124012 TTAGAC-ATGGAATGAACT-CGCTATGCCTAAGCCAACCCA
1 TTAGACTA-GGAATGAACTCCG-TATGCCTAAGTCAACCCA
21124051 TAAAACGGGT
Statistics
Matches: 301, Mismatches: 49, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
316 7 0.02
317 292 0.97
318 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (317 bp):
TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCC
GACCGAAGAGGCATAATACACAAGCCAGGGATCGGCCCAGTCCCCCTCTACGTGCTACCAGTCCC
ACTGCCACAACCCTCGATCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAATGAGCATGCGAGCGCTCAGCCGACCAGAAAGGCAAAATGCACAAGCCGGGGATCAGC
CCAGTCCCCCCTACATGCTGTCGATCCGACTACCACAACCCTCAGTCCGAGCTGAGC
Found at i:21124123 original size:158 final size:158
Alignment explanation
Indices: 21123389--21124139 Score: 451
Period size: 159 Copynumber: 4.7 Consensus size: 158
21123379 TAGACTGGGG
* * ** * * * * * *
21123389 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCCGACC-GAAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCATGAGAGCGCTCAGCCGACCAG-AGAG
* ** * * * *
21123453 GCATAATGCGTAAGCC-AGGGATCGGCCCAGTCCCCCTCTACGTGCTGCCAG-TCTCGCTGCCAC
65 GCAAAATGCACAAGCCGA-GGATCAGCCCGGTCCCCC-CTACATGCTG-CAGATCTCGCTACCAC
* *
21123516 AACCCTCGGTCCAACTGGGGCTTAGACATGGA
127 AACCCTCGATCCGACTGGGGCTTAGACATGGA
* * ** * * * * * * * * *
21123548 ATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGTGCTTAGCCGACCGGAAAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCATGAGAGCGCTCAGCCGACCAGAGAGG
* * * * * * ** * * * ** *
21123613 TAGAATGCGCAAGTCGGGGATCGGCCTAGTCCCCCTTGCGTGCTGTC-GATC-CGACTGTCGCAA
66 CAAAATGCACAAGCCGAGGATCAGCCCGGTCCCCCCTACATGCTG-CAGATCTCG-CTACCACAA
**
21123676 CCCTC-AGTCCGATCT-GATCTTAGAC-TAGGA
129 CCCTCGA-TCCGA-CTGGGGCTTAGACAT-GGA
* * * ** * ** * * * *
21123706 ATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGAGCCGA-CTGAAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCATGAGAGCGCTCAGCCGACCAG-AGAG
* * * * * * * * * * * * * *
21123770 GCATAATACACAAGCCGGGGATCGGCCCGATCCCCTTCTGCGTGCTACCGGTCCCACTGCCACAA
65 GCAAAATGCACAAGCCGAGGATCAGCCCGGTCCCC-CCTACATGCTGCAGATCTCGCTACCACAA
21123835 CCCTCGATCCGACTGGGGCTTAGACATGGA
129 CCCTCGATCCGACTGGGGCTTAGACATGGA
* * *
21123865 ATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGAGCGCTCAGCCGACCAGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCATGAGAGCGCTCAGCCGACCAGAGAGG
* *
21123930 CAAAATGCACAAGCCGGGGATCAGCCCGGTCCCCCCTACATGTTGCAGATCTCGCTACCACAACC
66 CAAAATGCACAAGCCGAGGATCAGCCCGGTCCCCCCTACATGCTGCAGATCTCGCTACCACAACC
* * *
21123995 CTCGGTCTGGCTGGGGCTTAGACATGGA
131 CTCGATCCGACTGGGGCTTAGACATGGA
* ** * * * * *
21124023 ATGAACTCGCTATGCCTAAGCCAACCCATAAAACGGGTGTGTAGGGTGCTCAGTCGATCGGAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCATG-AGAGCGCTCAGCCGACCAGAGAG
* ** * * *
21124088 GCATAATGTGCATGCCGAGGATC-GACCCTGTCCCCCCTACATGCTGCTGATC
65 GCAAAATGCACAAGCCGAGGATCAG-CCCGGTCCCCCCTACATGCTGCAGATC
21124140 CTACTGTCGC
Statistics
Matches: 482, Mismatches: 93, Indels: 34
0.79 0.15 0.06
Matches are distributed among these distances:
157 6 0.01
158 203 0.42
159 267 0.55
160 6 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
ATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCATGAGAGCGCTCAGCCGACCAGAGAGG
CAAAATGCACAAGCCGAGGATCAGCCCGGTCCCCCCTACATGCTGCAGATCTCGCTACCACAACC
CTCGATCCGACTGGGGCTTAGACATGGA
Found at i:21124581 original size:26 final size:26
Alignment explanation
Indices: 21124552--21124604 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21124542 CCGGTCCAAT
21124552 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
21124578 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21124604 C
1 C
21124605 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21125049 original size:159 final size:157
Alignment explanation
Indices: 21124577--21125070 Score: 546
Period size: 159 Copynumber: 3.1 Consensus size: 157
21124567 AACTCCGTAT
* *
21124577 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
* * *
21124642 CCGATCGGAGAGGTAGAATGTGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTCTGCGTGCTATCGATCC
* **
21124707 TGCT-CTCGCAACCCTCGGTCTGGTCTGA
131 TGCTGC-CGCAACCCTCGATCCAGT-TGA
* * * * * *
21124735 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCA
* * * *
21124799 GCCGATCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGACCCCTCTCTGCATGCTATCGAT
65 GCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCC-CTCTGCGTGCTATCGAT
** * * * *
21124864 CCCACTGCCACAACCCTCGTTTCAGTTGGG
129 CCTGCTGCCGCAACCCTCGATCCAGTT-GA
* * *
21124894 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
* * * * **
21124959 CCGGTCGGAGAGGCAGAATGCGCAAGCCCGAGGATTGGCCTTG-TCCCCTCTGCGTGCTGCCGAT
66 CCGATCGGAGAGGCAGAATGCGCAAG-CCGGGGATCGGCC-CGATCCCCTCTGCGTGCTATCGAT
* * *
21125023 ACTGCTGCCGTAACCCTCGACCCAGTTCGA
129 CCTGCTGCCGCAACCCTCGATCCAGTT-GA
*
21125053 TCTTAGAC-TGGGAATGAA
1 GCTTAGACAT-GGAATGAA
21125071 TGCTTAGACT
Statistics
Matches: 275, Mismatches: 53, Indels: 15
0.80 0.15 0.04
Matches are distributed among these distances:
157 1 0.00
158 98 0.36
159 160 0.58
160 15 0.05
161 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTCTGCGTGCTATCGATCC
TGCTGCCGCAACCCTCGATCCAGTTGA
Found at i:21132612 original size:26 final size:25
Alignment explanation
Indices: 21132567--21132622 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 25
21132557 CGACCCGATC
21132567 CGAT-CTTAGACTGGGAATGAACTT
1 CGATGCTTAGACTGGGAATGAACTT
21132591 CGTATGCTTAGACT-GGACATGAACTT
1 CG-ATGCTTAGACTGGGA-ATGAACTT
21132617 CGATGC
1 CGATGC
21132623 CTATGTCAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
24 2 0.07
25 9 0.31
26 18 0.62
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (25 bp):
CGATGCTTAGACTGGGAATGAACTT
Found at i:21132980 original size:26 final size:26
Alignment explanation
Indices: 21132951--21133003 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21132941 CTGGTCCGAT
21132951 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
21132977 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21133003 C
1 C
21133004 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21133338 original size:159 final size:156
Alignment explanation
Indices: 21133046--21133413 Score: 364
Period size: 159 Copynumber: 2.3 Consensus size: 156
21133036 CCCAACCGAC
* * * * * * * * *
21133046 CGGAGAGGCAGAATGCACAAGTCAAGGA-ATGGCCCGATCCCTCCTGCGTGCTGTCGATCCTGTT
1 CGGAAAGGCAGAATGCGCAAG-CAGGGATA-AGCCCGATCCCCCCTGCGTGCTGCCGGTCCCGCT
* * * * * * *
21133110 GTCGCAACCCTCAGTCCGATGGATCTTAGACTGGGAATGAACACCGTATGCCTAAGTCAACTCAT
64 GCCACAACCCTCAGTCCGATGGATATTAGACTGGGAATGAACACCCTATGCCTAAGCCAACCCAC
* *
21133175 GAAATGAGCGTGCGGGCGCTGAGCCAGT
129 GAAATGAGCATGCGGGCGCTCAGCCAGT
* ** * *
21133203 CGGAAAGGCATAATGCGCAAGTCAGGGATCGGCCCGGTCCCCCTCTGTGTGCTGCCGGTCCCGCT
1 CGGAAAGGCAGAATGCGCAAG-CAGGGATAAGCCCGATCCCCC-CTGCGTGCTGCCGGTCCCGCT
* *
21133268 GCCACAACCCTCGGTCCGACTAGGA-ATTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACC
64 GCCACAACCCTCAGTCCGA-T-GGATATTAGAC-TGGGAATGAACACCCTATGCCTAAGCCAACC
* * * * *
21133331 CCCGAAATGGGCATGCGGGTGCTCAGTCGGT
126 CACGAAATGAGCATGCGGGCGCTCAGCCAGT
* *
21133362 CGGAGAGGCAGAATGCGCAAGCCGGGATAAGCCCGATCCCCCCTGCGTGCTG
1 CGGAAAGGCAGAATGCGCAAGCAGGGATAAGCCCGATCCCCCCTGCGTGCTG
21133414 TCGATCCTAC
Statistics
Matches: 171, Mismatches: 35, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
157 44 0.26
158 49 0.29
159 74 0.43
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (156 bp):
CGGAAAGGCAGAATGCGCAAGCAGGGATAAGCCCGATCCCCCCTGCGTGCTGCCGGTCCCGCTGC
CACAACCCTCAGTCCGATGGATATTAGACTGGGAATGAACACCCTATGCCTAAGCCAACCCACGA
AATGAGCATGCGGGCGCTCAGCCAGT
Found at i:21134177 original size:26 final size:26
Alignment explanation
Indices: 21134139--21134191 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21134129 GGCTCAAAAT
*
21134139 CTTAGACTGGGAATGAAATCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
21134165 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAAATCCGTATG
21134191 C
1 C
21134192 CTAAGCAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:21134575 original size:159 final size:158
Alignment explanation
Indices: 21134164--21134612 Score: 452
Period size: 159 Copynumber: 2.8 Consensus size: 158
21134154 AAATCTGTAT
*
21134164 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCGTGCGGTGC-C-CA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCGTGTGG-GCACTCA
* * * *
21134227 GCCAGCCGGAGAGGCAGAACGCGCAAACCGGGGAT-TGACCTGGTCCCCCTGCGTCTTGTCGATC
65 GCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGACCTGATCCCCCTGCGTCTTGTCGATC
* *
21134291 CTGCTGCCACAACCCTCAGTCCGGTTTGA
130 CTGCTGCCACAACCCTCAGTCCGGCTGGA
* * ** *
21134320 TCTTAGAC-TGGGTATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGT-TCGGGCACTA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCGTGT-GGGCACTC
* * * * * * *
21134383 AGCC-GACCGAAGGGGCATAATGCGCAAGTCGGGGATCGGTCC-GATCCCCCTCTGTGTGTTGTC
64 AGCCAG-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGACCTGAT-CCCC-CTGCGTCTTGTC
* *
21134446 GGTCCTGCTGCCACAACCCTC-GATCCGGCTGGG
126 GATCCTGCTGCCACAACCCTCAG-TCCGGCTGGA
* * * **
21134479 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAAGCGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCGTGTGGGCACTCAG
* * * * *
21134544 CCAGTCGGAGAGGTAGAATACGTAAGCCGGGGATC-GA-CTCAGTCCCCTCTGCGTGC-TGTCGA
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGACCTGA-TCCCC-CTGCGT-CTTGTCGA
21134606 TCCTGCT
128 TCCTGCT
21134613 ATCGCAACCC
Statistics
Matches: 235, Mismatches: 43, Indels: 28
0.77 0.14 0.09
Matches are distributed among these distances:
155 3 0.01
156 51 0.22
157 31 0.13
158 32 0.14
159 115 0.49
160 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCGTGTGGGCACTCAG
CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGACCTGATCCCCCTGCGTCTTGTCGATCC
TGCTGCCACAACCCTCAGTCCGGCTGGA
Found at i:21134674 original size:26 final size:26
Alignment explanation
Indices: 21134638--21134690 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21134628 CATGTTCGAT
21134638 CTTAGACT-GGGATTAAACTCCGTATG
1 CTTAGACTGGGGA-TAAACTCCGTATG
* *
21134664 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATAAACTCCGTATG
21134690 C
1 C
21134691 CTAGGTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATAAACTCCGTATG
Found at i:21135035 original size:26 final size:26
Alignment explanation
Indices: 21134999--21135057 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
21134989 CTCGGTCCGG
21134999 TCCG-ATG-TTAGAC-TGAGAATGAAC
1 TCCGTATGCTTAGACATGA-AATGAAC
*
21135023 TCCGTATGCTTAGACATGAATTGAAC
1 TCCGTATGCTTAGACATGAAATGAAC
*
21135049 TCTGTATGC
1 TCCGTATGC
21135058 CTAAGCCAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 20 0.67
27 3 0.10
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.31
Consensus pattern (26 bp):
TCCGTATGCTTAGACATGAAATGAAC
Found at i:21135557 original size:26 final size:26
Alignment explanation
Indices: 21135506--21135558 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21135496 CCGGTTTGAT
**
21135506 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21135532 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
21135558 C
1 C
21135559 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21135820 original size:15 final size:12
Alignment explanation
Indices: 21135789--21135817 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
21135779 CCATCCGGCG
21135789 TGCTGTTGATCC
1 TGCTGTTGATCC
21135801 TGCTGTTGATCC
1 TGCTGTTGATCC
21135813 TGCTG
1 TGCTG
21135818 CTGGTCCTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.24, G:0.28, T:0.41
Consensus pattern (12 bp):
TGCTGTTGATCC
Found at i:21136295 original size:159 final size:154
Alignment explanation
Indices: 21135879--21136287 Score: 384
Period size: 158 Copynumber: 2.6 Consensus size: 154
21135869 AACTCTATGC
*
21135879 GCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTTA
** * *
21135943 GCTGGTTGGAGAGGCAGAATGCACAAGCTGGGGATTAACCCGATCCCCCCTGCGTGCTGTCAATC
66 GC-GG-CCGAGAGGCAGAATGCACAAGCTGGGGATCAACCCGATCCCCCCTGCGTGCTGCCAATC
*
21136008 TTGCTACCGCAACCCTCGGTCCGGTCTGA
129 TTGC-A-C-CAACCCTCGGTCCGGCCTGA
* * * ** *
21136037 TCTTAGAC-TGGGAATGAACT-TCGTATGCCTAAGTCAACCCATGAAACGAGCGTTTGGGTG-TT
1 GCTTAGACAT-GGAATGAACTCTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTT
* * * * * *
21136099 GAGCCGGCCGAAGAGGCATAATACGCAAGCTGGGGATCAGCCCGGTCCCCCTCTATGTGCTGCTG
65 -AG-CGGCCG-AGAGGCAGAATGCACAAGCTGGGGATCAACCCGATCCCCC-C--TGCG-TGCT-
* * *
21136164 GGCCCATTTTG-A-CAACCCTCGGTCC-GCCTGGG
122 -GCCAATCTTGCACCAACCCTCGGTCCGGCCT-GA
* *
21136196 GCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTTA
1 GCTTAGACATGGAATGAACTCTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTTA
*
21136260 GTCGGCCAGAGAGGCAGAATGCATAAGC
66 G-CGGCC-GAGAGGCAGAATGCACAAGC
21136288 CAGGGATCGA
Statistics
Matches: 202, Mismatches: 33, Indels: 31
0.76 0.12 0.12
Matches are distributed among these distances:
157 3 0.01
158 92 0.46
159 86 0.43
160 6 0.03
161 3 0.01
162 5 0.02
164 7 0.03
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (154 bp):
GCTTAGACATGGAATGAACTCTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTTA
GCGGCCGAGAGGCAGAATGCACAAGCTGGGGATCAACCCGATCCCCCCTGCGTGCTGCCAATCTT
GCACCAACCCTCGGTCCGGCCTGA
Found at i:21136303 original size:159 final size:153
Alignment explanation
Indices: 21135879--21136306 Score: 377
Period size: 159 Copynumber: 2.7 Consensus size: 153
21135869 AACTCTATGC
*
21135879 GCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTTA
** * * *
21135943 GCTGGTTGGAGAGGCAGAATGCACAAGCTGGGGATTAACCCGATCCCCCCTGCGTGCTGTCAATC
66 GC-GG-CCGAGAGGCAGAATGCACAAGCTGGGGA-TCACCCGGTCCCCCCTGCGTGCTGCCAATC
*
21136008 TTGCTACCGCAACCCTCGGTCCGGTCTGA
128 TTGC-A-C-CAACCCTCGGTCCGGCCTGA
* * * ** *
21136037 TCTTAGAC-TGGGAATGAACT-TCGTATGCCTAAGTCAACCCATGAAACGAGCGTTTGGGTG-TT
1 GCTTAGACAT-GGAATGAACTCTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTT
* * * *
21136099 GAGCCGGCCGAAGAGGCATAATACGCAAGCTGGGGATCAGCCCGGTCCCCCTCTATGTGCTGCTG
65 -AG-CGGCCG-AGAGGCAGAATGCACAAGCTGGGGATCA-CCCGGTCCCCC-C--TGCG-TGCT-
* * *
21136164 GGCCCATTTTG-A-CAACCCTCGGTCC-GCCTGGG
121 -GCCAATCTTGCACCAACCCTCGGTCCGGCCT-GA
* *
21136196 GCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTTA
1 GCTTAGACATGGAATGAACTCTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTTA
* ** *
21136260 GTCGGCCAGAGAGGCAGAATGCATAAGCCAGGGATCGATCCGGTCCC
66 G-CGGCC-GAGAGGCAGAATGCACAAGCTGGGGATC-ACCCGGTCCC
21136307 TCCTACATGC
Statistics
Matches: 217, Mismatches: 35, Indels: 35
0.76 0.12 0.12
Matches are distributed among these distances:
157 5 0.02
158 90 0.41
159 100 0.46
160 7 0.03
161 3 0.01
162 5 0.02
164 7 0.03
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.20
Consensus pattern (153 bp):
GCTTAGACATGGAATGAACTCTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTTA
GCGGCCGAGAGGCAGAATGCACAAGCTGGGGATCACCCGGTCCCCCCTGCGTGCTGCCAATCTTG
CACCAACCCTCGGTCCGGCCTGA
Found at i:21137263 original size:25 final size:26
Alignment explanation
Indices: 21137229--21137279 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21137219 CCGGTCTGAT
21137229 CTTAGACT-GGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21137254 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21137280 AATAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21137564 original size:342 final size:341
Alignment explanation
Indices: 21136910--21138144 Score: 2048
Period size: 342 Copynumber: 3.6 Consensus size: 341
21136900 GTCTGATCTA
* * ** *
21136910 TAGACT-GGAATGAACTGCGTATGGCCTAAGTCAACCCACGAAACGAGCATTTGGGCGCTGAGCT
1 TAGACTGGGGATGAACTCCGTAT-GAATAAGTCAACCCACGAAACGAGCATTCGGGCGCTGAGCT
* * * * *
21136974 GGCCGAAAAGGCGTATATGCGTAAGCCGGGGATCGGGCCTGATTCCTCTCTGCGTGCTGTCGATC
65 GGCCGAAAAGGCATA-ATGCGTAAGCTGGGGATC-GGCCTAATCCCTCTCTACGTGCTGTCGATC
*
21137039 CCGTTGCCACAAACCCTCGGTCCGACTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
128 CCATTGCCAC-AACCCTCGGTCCGACTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* *
21137104 ACCCACGAAACGGTCGGTGCGGATGCTAAGCTGAGCTGGAGAGGCAGAATGCGTAAATCGAGGAT
192 ACCCACGAAACGGGC-GTGCGGATGCTAAGCTG-GCTGGAGAGGCAGAATGCGTAAGTCGAGGAT
*
21137169 CGGCTCGATCCCCCCTGCGTGCTACCAAACCTTCTGTTGCAACCCTTGGTCCGGTCTGATCTTAG
255 CGGCTCGATCCCCCCTGCGTGCTACCAAACCTTCTGTTGCAACCCTCGGTCCGGTCTGATCTTAG
21137234 ACTGGAATGAACTCCATATGCT
320 ACTGGAATGAACTCCATATGCT
*
21137256 TAGACTGGGGATGAACTCCGTATGAATAAGTCAACCCATGAAACGAGCATTCGGGCGCTGAGCTG
1 TAGACTGGGGATGAACTCCGTATGAATAAGTCAACCCACGAAACGAGCATTCGGGCGCTGAGCTG
21137321 GCCGAAAAGGCATAATGCGTAAGCTGGGGATCGGCCTAATCCCTCTCTACGTGCTGTCGATCCCA
66 GCCGAAAAGGCATAATGCGTAAGCTGGGGATCGGCCTAATCCCTCTCTACGTGCTGTCGATCCCA
*
21137386 TTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACC
131 TTGCCACAACCCTCGGTCCGACT-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
21137451 CACGAAACGGGCGTGCGGATGCTAAGCTGGCTGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCT
195 CACGAAACGGGCGTGCGGATGCTAAGCTGGCTGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCT
*
21137516 CGATCCCCCTTGCGTGCTACCAAACCTTCTGTTGCAACCCTCGGTCCGGTCTGATCTTAGACTGG
260 CGATCCCCCCTGCGTGCTACCAAACCTTCTGTTGCAACCCTCGGTCCGGTCTGATCTTAGACTGG
21137581 AATGAACTCCATATGCT
325 AATGAACTCCATATGCT
*
21137598 TAGACTGGGGATGAACTCCGTATGAATAAGTCAACCCATGAAACGAGCATTCGGGCGCTGAGCTG
1 TAGACTGGGGATGAACTCCGTATGAATAAGTCAACCCACGAAACGAGCATTCGGGCGCTGAGCTG
*
21137663 GCCGAAAAGGCATAATGCGTAAGCTGGGGATCGGCCTAATCCCTCTCTACGTGCTGTCGATCCCG
66 GCCGAAAAGGCATAATGCGTAAGCTGGGGATCGGCCTAATCCCTCTCTACGTGCTGTCGATCCCA
21137728 TTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
131 TTGCCACAACCCTCGGTCCGACT-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
21137793 CACGAAACGGGCGTGCGGATGCTAAGCTGGCTGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCT
195 CACGAAACGGGCGTGCGGATGCTAAGCTGGCTGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCT
21137858 CGATCCCCCCTGCGTGCTACCAAACCTTCTGTTGCAACCCTCGGTCCGGTCTGATCTTAGACTGG
260 CGATCCCCCCTGCGTGCTACCAAACCTTCTGTTGCAACCCTCGGTCCGGTCTGATCTTAGACTGG
21137923 AATGAACTCCATATGCT
325 AATGAACTCCATATGCT
* ** *
21137940 TAGACTGGGGATGAACTCCGTATGAATAAGTCAACCCACGAAACGAGCATGCATGCACTGAGCTG
1 TAGACTGGGGATGAACTCCGTATGAATAAGTCAACCCACGAAACGAGCATTCGGGCGCTGAGCTG
* * * *
21138005 GCCGAAGAGGCATAATGCGTAAG-TCGGGGATCGG-CTCGATCCCTCTCTACGTGCTGTTGGTCT
66 GCCGAAAAGGCATAATGCGTAAGCT-GGGGATCGGCCT-AATCCCTCTCTACGTGCTGTCGATC-
* * *
21138068 TGCA--GCCACAACCCTCGGTTCGGCTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
128 -CCATTGCCACAACCCTCGGTCCGACTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
*
21138131 ACCCACAAAACGGG
192 ACCCACGAAACGGG
21138145 GCATACGGGC
Statistics
Matches: 848, Mismatches: 35, Indels: 17
0.94 0.04 0.02
Matches are distributed among these distances:
341 54 0.06
342 585 0.69
343 33 0.04
344 88 0.10
345 17 0.02
346 57 0.07
347 14 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (341 bp):
TAGACTGGGGATGAACTCCGTATGAATAAGTCAACCCACGAAACGAGCATTCGGGCGCTGAGCTG
GCCGAAAAGGCATAATGCGTAAGCTGGGGATCGGCCTAATCCCTCTCTACGTGCTGTCGATCCCA
TTGCCACAACCCTCGGTCCGACTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
ACGAAACGGGCGTGCGGATGCTAAGCTGGCTGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCTC
GATCCCCCCTGCGTGCTACCAAACCTTCTGTTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGA
ATGAACTCCATATGCT
Found at i:21137605 original size:25 final size:26
Alignment explanation
Indices: 21137571--21137621 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21137561 CCGGTCTGAT
21137571 CTTAGACT-GGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21137596 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21137622 AATAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21137947 original size:25 final size:26
Alignment explanation
Indices: 21137913--21137963 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21137903 CCGGTCTGAT
21137913 CTTAGACT-GGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21137938 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21137964 AATAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21138245 original size:26 final size:26
Alignment explanation
Indices: 21138204--21138256 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21138194 CCGGTCTGAT
21138204 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21138230 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCATATG
21138256 C
1 C
21138257 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21138613 original size:26 final size:26
Alignment explanation
Indices: 21138584--21138636 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21138574 CCGGTCTGAT
21138584 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
21138610 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21138636 C
1 C
21138637 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21139987 original size:26 final size:26
Alignment explanation
Indices: 21139958--21140010 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21139948 CTGGTCCGAT
21139958 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
21139984 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21140010 C
1 C
21140011 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21140345 original size:159 final size:155
Alignment explanation
Indices: 21139985--21140448 Score: 482
Period size: 159 Copynumber: 2.9 Consensus size: 155
21139975 CTCCGTATGC
* ** ** * *
21139985 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCTTATGAATGCCCAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGTGCTCAGCC
* * * *
21140050 GACCGGAGAGGCAGAATGCACAAGTCAAGGAATGGCCCGATCCCTCCTGCGTGCTGTCGATCCTG
66 G-TCGGAGAGGCAGAATGCGCAAGTC-AGGGATGGCCCGATCCCCCCTGCGTGCTGTCGATCCTG
* * *
21140115 TTGCCGCAACCCTCAGTCCGATGGATT
129 CTGCCGCAACCCTCGGTCCGATGGATA
* * * * * *
21140142 TTAGAC-TGGGAATGAACACCGTATGCCTAAGTCAACTCATGAAATGAGCGTGCGGGCGCTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGTGCTCAGC
* * * * * *
21140206 CAGTCGGAAAGGCATAATGCGCAAGTCAGGGATCGGCCCGGTCCCCCTCTGTGTGCTGCCGGTCC
65 C-GTCGGAGAGGCAGAATGCGCAAGTCAGGGAT-GGCCCGATCCCCC-CTGCGTGCTGTCGATCC
* *
21140271 CGCTGCCACAACCCTCGGTCCGACTAGGA-A
127 TGCTGCCGCAACCCTCGGTCCGA-T-GGATA
* ** *
21140301 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCCCGAAATGGGCATGCGGGTGCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGTGCTCAG-C
* * * * *
21140366 GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATAAGCCCGATCCCCCCTGCGTGCTGTCGATCCTA
65 CGTCGGAGAGGCAGAATGCGCAAGTCAGGGAT-GGCCCGATCCCCCCTGCGTGCTGTCGATCCTG
*
21140431 CTGCTGCAACCCTCGGTC
129 CTGCCGCAACCCTCGGTC
21140449 AGGTCCGATC
Statistics
Matches: 247, Mismatches: 52, Indels: 15
0.79 0.17 0.05
Matches are distributed among these distances:
156 6 0.02
157 82 0.33
158 64 0.26
159 90 0.36
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (155 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGTGCTCAGCC
GTCGGAGAGGCAGAATGCGCAAGTCAGGGATGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCT
GCCGCAACCCTCGGTCCGATGGATA
Found at i:21141200 original size:26 final size:26
Alignment explanation
Indices: 21141163--21141213 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
21141153 GCTCAAAATC
*
21141163 TTAGACTGGGAATGAAATCTGTATGG
1 TTAGACTGGGAATGAAATCCGTATGG
*
21141189 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAAATCCGTATG
21141214 CCTAAGCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAAATCCGTATGG
Found at i:21141647 original size:159 final size:158
Alignment explanation
Indices: 21141189--21141636 Score: 471
Period size: 159 Copynumber: 2.8 Consensus size: 158
21141179 ATCTGTATGG
* *
21141189 TTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCGTGCGGTGC-C-CAGC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGG-GCACTCAGC
* * * * *
21141252 CAGCCGGAGAGGCAGAACGCGCAAACCAGGGATTGACCTGGT--CCCCCTGCGT-CTTGTCGATC
65 CAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACC-AGTCCCCCCCTGCGTGC-TGTCGATC
* * * *
21141314 CTGCTGCCACAACCCTCAGTTCGGTTTGATC
128 CTGCTGCCACAACCCTCAGTCCGGCTGGAGC
* * *
21141345 TTAGAC-TGGGTATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-TCGGGCACTAAG
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGT-GGGCACTCAG
* * * * * * * * * * *
21141408 CCAACCGAAGGGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGTGTGTTGTCGGTC
64 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAG-TCCCCCCCTGCGTGCTGTCGATC
*
21141473 CTGCTGCCACAACCCTC-GATCCGGCTGGGGC
128 CTGCTGCCACAACCCTCAG-TCCGGCTGGAGC
* * **
21141504 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAAGCGTGTGGGCACTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAGCC
* * *
21141569 AGTCGGAGAGGTAGAATGCGTAAGCCGGGGATCGACTCAGTCCCCCCCTGCGTGCTGTCGATCCT
66 AGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGAC-CAGTCCCCCCCTGCGTGCTGTCGATCCT
21141634 GCT
130 GCT
21141637 ATCGCAACCC
Statistics
Matches: 234, Mismatches: 46, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
155 3 0.01
156 50 0.21
157 32 0.14
158 1 0.00
159 144 0.62
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAGCC
AGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGTCCCCCCCTGCGTGCTGTCGATCCTG
CTGCCACAACCCTCAGTCCGGCTGGAGC
Found at i:21141666 original size:159 final size:157
Alignment explanation
Indices: 21141189--21141688 Score: 458
Period size: 159 Copynumber: 3.2 Consensus size: 157
21141179 ATCTGTATGG
* *
21141189 TTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCGTGCGGTGC-C-CAGC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGG-GCACTCAGC
* * * * *
21141252 CAGCCGGAGAGGCAGAACGCGCAAACCAGGGATTGACCTGGT--CCCCCTGCGT-CTTGTCGATC
65 CAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACC-AGTCCCCCCCTGCGTGC-TGTCGATC
* *
21141314 CTGCTGCCACAACCCTCAGTTCGGTTTGATC
128 CTGCTGCCACAACCCT-AGATCGGTTCGATC
* * *
21141345 TTAGAC-TGGGTATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-TCGGGCACTAAG
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGT-GGGCACTCAG
* * * * * * * * * * *
21141408 CCAACCGAAGGGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGTGTGTTGTCGGTC
64 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAG-TCCCCCCCTGCGTGCTGTCGATC
* * * **
21141473 CTGCTGCCACAACCCTCGATCCGGCTGGGGC
128 CTGCTGCCACAACCCTAGAT-CGGTTCGATC
* * **
21141504 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAAGCGTGTGGGCACTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAGCC
* * *
21141569 AGTCGGAGAGGTAGAATGCGTAAGCCGGGGATCGACTCAGTCCCCCCCTGCGTGCTGTCGATCCT
66 AGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGAC-CAGTCCCCCCCTGCGTGCTGTCGATCCT
** * * * *
21141634 GCTATCGCAACCCTTGGTCATGTTCGATC
130 GCTGCCACAACCCTAGATC-GGTTCGATC
* *
21141663 TTAGAC-TGGGATTAAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
21141689 TTAGATTGGG
Statistics
Matches: 270, Mismatches: 60, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
155 3 0.01
156 50 0.19
157 32 0.12
158 4 0.01
159 177 0.66
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (157 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAGCC
AGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGTCCCCCCCTGCGTGCTGTCGATCCTG
CTGCCACAACCCTAGATCGGTTCGATC
Found at i:21141698 original size:26 final size:26
Alignment explanation
Indices: 21141662--21141714 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21141652 CATGTTCGAT
21141662 CTTAGACT-GGGATTAAACTCCGTATG
1 CTTAGACTGGGGA-TAAACTCCGTATG
* *
21141688 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATAAACTCCGTATG
21141714 C
1 C
21141715 CTAGGTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATAAACTCCGTATG
Found at i:21142059 original size:26 final size:26
Alignment explanation
Indices: 21142023--21142081 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
21142013 CTCGGTCCGG
21142023 TCCG-ATG-TTAGAC-TGAGAATGAAC
1 TCCGTATGCTTAGACATGA-AATGAAC
* *
21142047 TCCGTATGCTTAGACATTAATTGAAC
1 TCCGTATGCTTAGACATGAAATGAAC
21142073 TCCGTATGC
1 TCCGTATGC
21142082 CTAAGCCAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 21 0.70
27 2 0.07
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (26 bp):
TCCGTATGCTTAGACATGAAATGAAC
Found at i:21142581 original size:26 final size:26
Alignment explanation
Indices: 21142530--21142582 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21142520 CCGGTTTGAT
**
21142530 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21142556 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
21142582 C
1 C
21142583 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21142844 original size:15 final size:12
Alignment explanation
Indices: 21142813--21142841 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
21142803 CCATCCGGCA
21142813 TGCTGTTGATCC
1 TGCTGTTGATCC
21142825 TGCTGTTGATCC
1 TGCTGTTGATCC
21142837 TGCTG
1 TGCTG
21142842 CTGGTCCTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.24, G:0.28, T:0.41
Consensus pattern (12 bp):
TGCTGTTGATCC
Found at i:21143319 original size:159 final size:156
Alignment explanation
Indices: 21142903--21143306 Score: 406
Period size: 159 Copynumber: 2.5 Consensus size: 156
21142893 AACTCTATGC
* * *
21142903 GCTTAGACATGGAATGAACTCCGTATGCCTCAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
** * *
21142968 CTGGTTGGAGAGGCAGAATGCGCAAGCTGGGGATTAACCCGATCCCCCCCTGCGTGCTGTCAATC
66 C-GG-CCGAGAGGCAGAATGCGCAAGCTGGGGATTAACCCGATCCCCCCCTACGTGCTGTCAAGC
*
21143033 CTGCTATCGCAACCCTCGGTCCGGTCTGA
129 C-GCTATCGCAACCCTCGGTCCGGCCTGA
* * * ** *
21143062 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTTGGGTG-TTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTT-
* * * * * * *
21143125 AGCCGGCCGAAGAGGCATAATACGCAAGCTGGGGATTAGCCCGGTCCCCCTCTATGTGCTG-CTG
64 AG-CGGCCG-AGAGGCAGAATGCGCAAGCTGGGGATTAACCCGATCCCCCCCTACGTGCTGTC-A
* * * *
21143189 GGCC-CATTTTGACAACCCTCGGTCC-GCCTGGG
126 AGCCGC-TATCG-CAACCCTCGGTCCGGCCT-GA
*
21143221 GCTTAGACATGGAATGAACTCAC-TATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTTA
1 GCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTA
21143285 GTCGGCCAGAGAGGCAGAATGC
65 G-CGGCC-GAGAGGCAGAATGC
21143307 ATAAGCCAGG
Statistics
Matches: 198, Mismatches: 35, Indels: 24
0.77 0.14 0.09
Matches are distributed among these distances:
157 1 0.01
158 10 0.05
159 181 0.91
160 6 0.03
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
CGGCCGAGAGGCAGAATGCGCAAGCTGGGGATTAACCCGATCCCCCCCTACGTGCTGTCAAGCCG
CTATCGCAACCCTCGGTCCGGCCTGA
Found at i:21143785 original size:26 final size:26
Alignment explanation
Indices: 21143747--21143799 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21143737 CTGGTTCAAT
*
21143747 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
21143773 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
21143799 C
1 C
21143800 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:21144089 original size:867 final size:855
Alignment explanation
Indices: 21142825--21144541 Score: 2000
Period size: 867 Copynumber: 2.0 Consensus size: 855
21142815 CTGTTGATCC
* * *
21142825 TGCTGTTGATCCTGCTGCTGGTCCTACTACCGCAAGCCTCGGTCCGATCCGATCATAGACTGGGA
1 TGCTGTCGATCCTGCTGCTGGTCCTACTACCGCAACCCTCGGTCCGATCCAATCATAGACTGGGA
* * *
21142890 ATGAACTCTATGCGCTTAGACATGGAATGAACTCCGTATGCCTCAGCCAACCCACGAAACGAGCA
66 ATGAACTCTATACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCA
* * * *** * *
21142955 TGCGGGCGCTCAGCTGGTTGGAGAGGCAGAATGCGCAAGCTGGGGATTAACCCGATCCCCCCCTG
131 TGCAGGCGCTCAACCGACCGAAGAGGCAGAATGCACAAGCTGGGGATTAACCCGATCCCCCCCTG
* * *
21143020 CGTGCTGTCAATCCTGCTATCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
196 CATGCTGTCAATCCTACTATCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * * *
21143085 TATGCCTAAGTCAACCCATGAAACGAGCGTTTGGGTGTTGAGCCGGCCGAAGAGGCATAATACGC
261 TATGCCTAAGTCAACCCACGAAACGAGCATTTGGGCGCTGAGCCGGCCGAAAAGGCATAATACGC
* * * * * ***
21143150 AAGCTGGGGATTAGCCCGGTCCCCCTCTATGTGCTGCTGGGCCCATTTTGACAACCCTCGGTCCG
326 AAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGCTGAGCCCATTGCCACAACCCTCGGTCCG
* *
21143215 CCTGGGGCTTAGACATGGAATGAACTCACTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGC
391 ACTGGGGCTTAGACATGGAATGAACTCACTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGAC
* * *
21143280 GCTTAG-TCGGCCAGAGAGGCAGAATGCATAAGCC-AGGGATCGG-TCCGGTCCCTCCTGCATGC
456 GCTAAGCT-GGCCAGAGAGGCAGAATGCATAAACCGA-GGATCGGCT-CGATCCC-CCTGCATGC
** * * * *
21143342 TGTCGATCCTACTGCGGCAACCCTCGATCCGATCCGATCTTAGATTGGAAATGAACTCCGTATGC
517 TACCAAACCTACTGCGGCAACCCTCGATCCGATCCGATCTTAGACTGG-AATGAACTCCATATGC
** ** * *
21143407 TTAGACTGGGGATGAACTTTGTATGCCTAAGTCAACCCATGAAATGAGCGTACAAGCGCTCAG-T
581 TTAGACTGGGGATGAACTCCGTATGAATAAGTCAACCCATGAAACGAGCATACAAGCGCTCAGCT
* * * * *
21143471 CAGCCGGAGAGGGATAATGCACAAGCCGAGGATCAGCCCGATCCC-CTTCTGCGT-CTTGTCGAT
646 -AGCCGAAAAGGCATAATGCACAAGCCGAGGATCAGCCCAATCCCTC-TCTACGTGC-TGTCGAT
* * *
21143534 CCCGTTACCGGTCCTGCTACCACAACCTTCGGTTCGGCTGGGGCTAAGACATGGAATGAACTCCG
708 CCCGTT----G--C--C-A-CA-AACCTT-GGTCCGACTGGGGCTAAGACATGGAATGAACTCCC
* * *
21143599 TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAATC-GGCCA-GAGAGGCAGAATGC
761 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGATGCT-AAGCTGG-CAGGAGAGGCAGAATGC
*
21143662 GCAAGTCGGGGATCGGCTCGATCCCCCTTACA
824 GCAAGTCGAGGATCGGCTCGATCCCCCTTACA
* * * * * *
21143694 TGCTGTCGATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCTGGTTCAATCTTAGACTGGGA
1 TGCTGTCGATCCTGCTGCTGGTCCTACTACCGCAACCCTCGGTCCGATCCAATCATAGACTGGGA
* * * * * ** *
21143759 ATGAACTTTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGGCAACCCGTGAAACAAGCG
66 ATGAACTCTATACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCA
* ** *
21143824 TGCAGGTGCTCAACCGACCGAAGAGGCAGAATGCACAAGCTGGGGA-TGGCCCGAT-CCCTCCTG
131 TGCAGGCGCTCAACCGACCGAAGAGGCAGAATGCACAAGCTGGGGATTAACCCGATCCCCCCCTG
* * * * * *
21143887 CATGCTGTCGATCTTACT-GCTGCAACCCTTAGTTCGGTCTGATCTTAGACTGGGAATGAACTGC
196 CATGCTGTCAATCCTACTATC-GCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
* * *
21143951 GTATGCCTAAGTCAACCCACGAAACGAGCATTTGGGCGCTGAGCTGGCCGAAAAGGCGTAATGCG
260 GTATGCCTAAGTCAACCCACGAAACGAGCATTTGGGCGCTGAGCCGGCCGAAAAGGCATAATACG
* * * * * * * * *
21144016 TAAGCCGGGGATCGGCCTGATTCCTCTCTGCGTGCT-ATCGATCCCGTTGCCACAACCCTCGGTC
325 CAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGCT-GAGCCCATTGCCACAACCCTCGGTC
* *
21144080 CGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGG
389 CGACTGGGGCTTAGACATGGAATGAACTCACTATGCCTAAGCCAACCCACGAAACGGGCGTGCGG
* ** * * *
21144145 ATGCTAAGCTGGCTGGAGAGGCAGAATGCGTAAATCGAGGATCGGCTCGATCCCCCTGCGTGCTA
454 ACGCTAAGCTGGCCAGAGAGGCAGAATGCATAAACCGAGGATCGGCTCGATCCCCCTGCATGCTA
* ** * * * *
21144210 CCAAACCTTCTGTTGCAACCCTTGGTCCGGTCTGATCTTAGACTGGAATGAACTCCATATGCTTA
519 CCAAACCTACTGCGGCAACCCTCGATCCGATCCGATCTTAGACTGGAATGAACTCCATATGCTTA
* ** * *
21144275 GACTGGGGATGAACTCCGTATGAATAAGTCAACCCATGAAACGAGCATTCGGGCGCTGAGCTGGC
584 GACTGGGGATGAACTCCGTATGAATAAGTCAACCCATGAAACGAGCATACAAGCGCTCAGCTAGC
** * * * *
21144340 CGAAAAGGCATAATGCGTAAGCTGGGGATCGGCCTAATCCCTCTCTACGTGCTGTCGATCCCGTT
649 CGAAAAGGCATAATGCACAAGCCGAGGATCAGCCCAATCCCTCTCTACGTGCTGTCGATCCCGTT
* *
21144405 GCCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
714 GCCACAAACCTTGGTCCGACTGGGGCTAAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * *
21144470 TGAAACGGGCGTGCGGATGCTAAGCTGGCAGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCTCG
779 CGAAACGAGCGTGCGGATGCTAAGCTGGCAGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCTCG
21144535 ATCCCCC
844 ATCCCCC
21144542 CTGCGTGCTA
Statistics
Matches: 712, Mismatches: 126, Indels: 36
0.81 0.14 0.04
Matches are distributed among these distances:
852 5 0.01
853 107 0.15
854 5 0.01
855 2 0.00
856 1 0.00
857 1 0.00
859 1 0.00
861 1 0.00
865 120 0.17
866 49 0.07
867 263 0.37
868 10 0.01
869 147 0.21
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (855 bp):
TGCTGTCGATCCTGCTGCTGGTCCTACTACCGCAACCCTCGGTCCGATCCAATCATAGACTGGGA
ATGAACTCTATACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCA
TGCAGGCGCTCAACCGACCGAAGAGGCAGAATGCACAAGCTGGGGATTAACCCGATCCCCCCCTG
CATGCTGTCAATCCTACTATCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
TATGCCTAAGTCAACCCACGAAACGAGCATTTGGGCGCTGAGCCGGCCGAAAAGGCATAATACGC
AAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGCTGAGCCCATTGCCACAACCCTCGGTCCG
ACTGGGGCTTAGACATGGAATGAACTCACTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGAC
GCTAAGCTGGCCAGAGAGGCAGAATGCATAAACCGAGGATCGGCTCGATCCCCCTGCATGCTACC
AAACCTACTGCGGCAACCCTCGATCCGATCCGATCTTAGACTGGAATGAACTCCATATGCTTAGA
CTGGGGATGAACTCCGTATGAATAAGTCAACCCATGAAACGAGCATACAAGCGCTCAGCTAGCCG
AAAAGGCATAATGCACAAGCCGAGGATCAGCCCAATCCCTCTCTACGTGCTGTCGATCCCGTTGC
CACAAACCTTGGTCCGACTGGGGCTAAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
AAACGAGCGTGCGGATGCTAAGCTGGCAGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCTCGAT
CCCCCTTACA
Found at i:21144280 original size:25 final size:26
Alignment explanation
Indices: 21144246--21144296 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21144236 CCGGTCTGAT
21144246 CTTAGACT-GGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21144271 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21144297 AATAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21144356 original size:341 final size:342
Alignment explanation
Indices: 21143930--21144820 Score: 1471
Period size: 342 Copynumber: 2.6 Consensus size: 342
21143920 TCGGTCTGAT
* * ** *
21143930 CTTAGACTGGGAATGAACTGCGTATGCCTAAGTCAACCCACGAAACGAGCATTTGGGCGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGAATAAGTCAACCCACGAAACGAGCATTCGGGCGCTGAGC
* * * *
21143995 TGGCCGAAAAGGCGTAATGCGTAAGCCGGGGATCGGCCTGATTCCTCTCTGCGTGCTATCGATCC
66 TGGCCGAAAAGGCATAATGCGTAAGCCGGGGATCGGCCTGATCCCTCTCTACGTGCTGTCGATCC
21144060 CGTTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGTTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* *
21144125 CCCACGAAACGGGTGTGCGGATGCTAAGCTGGCTGGAGAGGCAGAATGCGTAAATCGAGGATCGG
196 CCCACGAAACGGGCGTGCGGATGCTAAGCTGGCAGGAGAGGCAGAATGCGTAAATCGAGGATCGG
*
21144190 CTCGAT-CCCCCTGCGTGCTACCAAACCTTCTGTTGCAACCCTTGGTCCGGTCTGATCTTAGACT
261 CTCGATCCCCCCTGCGTGCTACCAAACCTTCTGTTGCAACCCTCGGTCCGGTCTGATCTTAGACT
21144254 GGAATGAACTCCATATG
326 GGAATGAACTCCATATG
*
21144271 CTTAGACTGGGGATGAACTCCGTATGAATAAGTCAACCCATGAAACGAGCATTCGGGCGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGAATAAGTCAACCCACGAAACGAGCATTCGGGCGCTGAGC
* *
21144336 TGGCCGAAAAGGCATAATGCGTAAGCTGGGGATCGGCCTAATCCCTCTCTACGTGCTGTCGATCC
66 TGGCCGAAAAGGCATAATGCGTAAGCCGGGGATCGGCCTGATCCCTCTCTACGTGCTGTCGATCC
*
21144401 CGTTGCCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGTTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* *
21144466 CCCATGAAACGGGCGTGCGGATGCTAAGCTGGCAGGAGAGGCAGAATGCGTAAGTCGAGGATCGG
196 CCCACGAAACGGGCGTGCGGATGCTAAGCTGGCAGGAGAGGCAGAATGCGTAAATCGAGGATCGG
21144531 CTCGATCCCCCCTGCGTGCTACCAAACCTTCTGTTGCAACCCTCGGTCCGGTCTGATCTTAGACT
261 CTCGATCCCCCCTGCGTGCTACCAAACCTTCTGTTGCAACCCTCGGTCCGGTCTGATCTTAGACT
21144596 GGAATGAACTCCATATG
326 GGAATGAACTCCATATG
* * ** *
21144613 CTTAGACTGGGGATGAACTCCGTATGAATAAGTCAACCCACGAAATGAGCATGCATGCACTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGAATAAGTCAACCCACGAAACGAGCATTCGGGCGCTGAGC
* *
21144678 TGGCCGAAGAGGCATAATGCGTAAGCCGGGGATCGG-CTCGATCCCTCTCTACGTGCTGTCGGTC
66 TGGCCGAAAAGGCATAATGCGTAAGCCGGGGATCGGCCT-GATCCCTCTCTACGTGCTGTCGATC
** ** * *
21144742 TTGCAGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CCGTTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
*
21144807 ACCCACAAAACGGG
195 ACCCACGAAACGGG
21144821 GCATACGGGC
Statistics
Matches: 511, Mismatches: 37, Indels: 3
0.93 0.07 0.01
Matches are distributed among these distances:
341 251 0.49
342 260 0.51
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (342 bp):
CTTAGACTGGGGATGAACTCCGTATGAATAAGTCAACCCACGAAACGAGCATTCGGGCGCTGAGC
TGGCCGAAAAGGCATAATGCGTAAGCCGGGGATCGGCCTGATCCCTCTCTACGTGCTGTCGATCC
CGTTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGGGCGTGCGGATGCTAAGCTGGCAGGAGAGGCAGAATGCGTAAATCGAGGATCGG
CTCGATCCCCCCTGCGTGCTACCAAACCTTCTGTTGCAACCCTCGGTCCGGTCTGATCTTAGACT
GGAATGAACTCCATATG
Found at i:21144622 original size:25 final size:26
Alignment explanation
Indices: 21144588--21144638 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21144578 CCGGTCTGAT
21144588 CTTAGACT-GGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21144613 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21144639 AATAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21144921 original size:26 final size:26
Alignment explanation
Indices: 21144880--21144932 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21144870 CCGGTCTGAT
21144880 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
21144906 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTAGGA-ATGAACTCCATATG
21144932 C
1 C
21144933 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:21145289 original size:26 final size:26
Alignment explanation
Indices: 21145260--21145312 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21145250 CCGGTCTGAT
21145260 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
21145286 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21145312 C
1 C
21145313 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21146517 original size:26 final size:26
Alignment explanation
Indices: 21146479--21146531 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21146469 GGCTCAAAAT
*
21146479 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21146505 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21146531 C
1 C
21146532 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21146991 original size:26 final size:26
Alignment explanation
Indices: 21146961--21147013 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21146951 TCAGGTCCAT
21146961 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* * *
21146987 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
21147013 C
1 C
21147014 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:21147342 original size:170 final size:169
Alignment explanation
Indices: 21146986--21147353 Score: 411
Period size: 170 Copynumber: 2.2 Consensus size: 169
21146976 AACTCCATAT
* * *
21146986 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAAGAGCGTGCGGGCGCTCAG
* * * **
21147051 TAGGCCGAAGGGGCATAAGGCGCAAGCCGGGGATCAACCCGATCCCCTCTGCGTGCTGTCGATCC
65 TAGACCGAAGAGGCAGAAGGCGCAAGCCGGGGATCAACCCGATCCCCTCTGCGTGCTACCGATCC
* * * *
21147116 CACTGTCGGTCTTGCTGCCACAACCCTCGGTCCAGCCGAG
130 CACTGTCGGTCCTACTACCACAACCCTCGGTCCAGCCGAA
* *
21147156 GGTTAGACCTGGAATGAACTCTGTATGCCTAAGCCAACCCA-AAAAATGAGCGTGCGGGCGCTCA
1 GCTTAGA-CTGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAA-GAGCGTGCGGGCGCTCA
* * * * *
21147220 GTCGACCGAAGAGGCAGAA-TCGTAATCCGGGGATCAACCCGGTCCCCTCCTGCGTGCTACCGAT
64 GTAGACCGAAGAGGCAGAAGGCGCAAGCCGGGGATCAACCCGATCCCCT-CTGCGTGCTACCGAT
* * * * * *
21147284 CCTACTG-CTGGTCCTACTATCGCAATCCTCGGTCTGATCC-AA
128 CCCACTGTC-GGTCCTACTACCACAACCCTCGGTC-CAGCCGAA
*
21147326 TCTTAGACTAGGAATGAACTCCGTATGC
1 GCTTAGACT-GGAATGAACTCCGTATGC
21147354 TTAGACATGG
Statistics
Matches: 164, Mismatches: 28, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
169 32 0.20
170 127 0.77
171 5 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (169 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAAGAGCGTGCGGGCGCTCAGT
AGACCGAAGAGGCAGAAGGCGCAAGCCGGGGATCAACCCGATCCCCTCTGCGTGCTACCGATCCC
ACTGTCGGTCCTACTACCACAACCCTCGGTCCAGCCGAA
Found at i:21147365 original size:26 final size:26
Alignment explanation
Indices: 21147327--21147379 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21147317 CTGATCCAAT
21147327 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21147353 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
21147379 C
1 C
21147380 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21147854 original size:158 final size:156
Alignment explanation
Indices: 21147353--21147854 Score: 445
Period size: 158 Copynumber: 3.2 Consensus size: 156
21147343 ACTCCGTATG
* ** *
21147353 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGCGCTCAG-
* * * * * * * * * *
21147418 CGGCTAGAGAGACAGAATGTGCATGCCAGGGACCGACCCAATCCCCCCTGCGTGCTATCAATCCT
65 CGGATAGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCTAGTCTCCCCTGCGTGCTACCGATCCT
* * * *
21147483 ACTGTCGTAACCCTCGGTCTGGTCTAAT
130 ACTGCCGCAACCCTCGGTC-CGTCTGAT
* * * * * * *
21147511 CTTAGAC-TAGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTTTGAGTGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGCGCTCAG
* * * * * * * *
21147575 CCGACCAGAGAGGCATAATGCGCAAGCCGGGGATCAGCCTAGTCTCCCTCTGTGTGCTACCGGTC
65 CGGA-TAGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCTAGTCTCCC-CTGCGTGCTACCGATC
* * **
21147640 CTACTGCCACAACCCTCAGTTCCGT-TGGGG
128 CTACTGCCGCAACCCTC-GGTCCGTCT-GAT
* * *
21147670 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCATGAAACGGGCGTATGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGCGCTCAG-
* ** * * * * *
21147735 CGG-TTGAAGAGGCAGAATGTGCAAGCCAGGGATCGGTTTGGTCTGCCCTGCATGTTGCCGATCC
65 CGGATAG-AGAGGCAGAATGTGCAAGCCAGGGATCGGCCTAGTCTCCCCTGCGTGCTACCGATCC
21147799 TACTGCCGCAACCCTCGGTCCGATCTGAT
129 TACTGCCGCAACCCTCGGTCCG-TCTGAT
21147828 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
21147855 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 67, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 9 0.03
158 138 0.52
159 113 0.42
160 6 0.02
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGCGCTCAGC
GGATAGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCTAGTCTCCCCTGCGTGCTACCGATCCTA
CTGCCGCAACCCTCGGTCCGTCTGAT
Found at i:21147857 original size:26 final size:26
Alignment explanation
Indices: 21147828--21147880 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21147818 CCGATCTGAT
21147828 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21147854 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21147880 C
1 C
21147881 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21148695 original size:26 final size:26
Alignment explanation
Indices: 21148666--21148718 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21148656 CCGATCCAAT
21148666 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
21148692 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
21148718 C
1 C
21148719 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:21149051 original size:26 final size:26
Alignment explanation
Indices: 21149013--21149065 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21149003 TCTGGTCGAA
21149013 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21149039 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21149065 C
1 C
21149066 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21149542 original size:26 final size:26
Alignment explanation
Indices: 21149513--21149565 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21149503 CCGGTCTGAT
21149513 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
21149539 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
21149565 C
1 C
21149566 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:21149761 original size:26 final size:26
Alignment explanation
Indices: 21149723--21149775 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21149713 CTGGTCTGAT
21149723 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21149749 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21149775 C
1 C
21149776 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21150103 original size:159 final size:158
Alignment explanation
Indices: 21149748--21150250 Score: 465
Period size: 158 Copynumber: 3.2 Consensus size: 158
21149738 AACTCCATAT
* * * * **
21149748 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGGGCACTCAG
* * *
21149813 CCGACCGGAGAGGCAAAATGCGCAAGCCAGGGATCAACCCGGTCCGCCCTGCATGCTATCGATCC
66 CCGACCGGAGAGGCAAAATGCGCAAGCCAGGGATCAACCCGGTCCCCCCTACATGCGATCGATCC
** ** *
21149878 TGCTGCTGCAACCCTCGGTTCAGTCCGA
131 CACTGCCACAACCCTCGGTCCAGTCCGA
* * * * * *
21149906 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAAGGAGCGTTCGGGCATTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGGGCACTCA
* * * * * * * *
21149970 GCCGGCCAGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGTTCCCCCTCTACGTGCGGTCGGT
65 GCCGACCGGAGAGGCAAAATGCGCAAGCCAGGGATCAACCCGGTCCCCC-CTACATGCGATCGAT
** *
21150035 CCCACTGCCACAACCCTCGGTCC-GATTGGG
129 CCCACTGCCACAACCCTCGGTCCAG-TCCGA
* *
21150065 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGG-GTGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GGAGCGTGCGGGCACTCA
* *** ** ** * * * *
21150129 GCCGACCGGAGAGGCAGAATGCGCAAGTTGGGGATCGGCTTGGTCCCCCCTGCGTGCAACCGATC
65 GCCGACCGGAGAGGCAAAATGCGCAAGCCAGGGATCAACCCGGTCCCCCCTACATGCGATCGATC
*** * * *
21150194 CTGTTGCCATAACCCTCCGTCCGGTCCGA
130 CCACTGCCACAACCCTCGGTCCAGTCCGA
*
21150223 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
21150251 TTAGACTAGG
Statistics
Matches: 274, Mismatches: 64, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
157 2 0.01
158 148 0.54
159 121 0.44
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGGGCACTCAG
CCGACCGGAGAGGCAAAATGCGCAAGCCAGGGATCAACCCGGTCCCCCCTACATGCGATCGATCC
CACTGCCACAACCCTCGGTCCAGTCCGA
Found at i:21150253 original size:26 final size:26
Alignment explanation
Indices: 21150224--21150302 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
21150214 CCGGTCCGAT
21150224 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21150250 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21150276 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21150302 C
1 C
21150303 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21150659 original size:26 final size:26
Alignment explanation
Indices: 21150630--21150682 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
21150620 CCGGTTCGAT
21150630 CTTAGAC-TGAGAATGAACT-TCGTATG
1 CTTAGACATG-GAATGAACTCT-GTATG
21150656 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
21150682 C
1 C
21150683 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:21151182 original size:26 final size:26
Alignment explanation
Indices: 21151131--21151183 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21151121 CCGGTCTGAT
*
21151131 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21151157 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21151183 C
1 C
21151184 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21152175 original size:26 final size:27
Alignment explanation
Indices: 21152134--21152191 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
21152124 CCCATTCGAT
*
21152134 CTTAGACTAGGAATGAACTCTGTATG-
1 CTTAGACTAGGAATGAACTCCGTATGC
* *
21152160 CTTAGACTGGGGATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
21152187 CTTAG
1 CTTAG
21152192 TCAACCCATG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (27 bp):
CTTAGACTAGGAATGAACTCCGTATGC
Found at i:21152367 original size:26 final size:26
Alignment explanation
Indices: 21152329--21152381 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21152319 CCGATCAGAT
* *
21152329 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
21152355 CTTAGAC-ATGGAATAAACTCCGTATG
1 CTTAGACTA-GGAATAAACTCCGTATG
21152381 C
1 C
21152382 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:21153235 original size:26 final size:26
Alignment explanation
Indices: 21153197--21153249 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21153187 CTGGTCTGAT
21153197 CTTAGACTAGGAATGAACTCAGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
* *
21153223 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
21153249 C
1 C
21153250 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCAGTATG
Found at i:21153291 original size:355 final size:343
Alignment explanation
Indices: 21152513--21153312 Score: 766
Period size: 355 Copynumber: 2.3 Consensus size: 343
21152503 TTGGTCCGAT
* * * * * * *
21152513 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCAGACGTTGAGC
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGTTGAGT
* ** *
21152578 CGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCTGGTCCCCCTCTACGTGTTGTCGGTCC
66 CGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCTGGTCCCCCTCTACGTATTACCGATCC
* * *
21152643 CGCTGCCACAACCCTCGGTCTAGCTGGGGCTTAGACATGGAGTGAACTCCCTATGCCTAAGCCAA
131 CACTGCCACAACCCCCGGTCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * ***
21152708 CCCATGAAACGGGTGTGCGGGTGCTCAACCAACCGAAGAGGTAAAATGTGTAAGCCAGGGATCAG
196 CCCACGAAACGAGCGTACGGGTGCTCAACCAACCGAAGAGGTAAAATGCACAAGCCAGGGATCAG
* * * * *
21152773 CCCGGTCCCCCCTATGTGCTGTCGATCCTGCTACTGCAACCCTCGGTTTGGTTCGATCTTAGATT
261 CCCGGTCCCCCCTATGTCCTGTCGATCCTGCTACCGCAACCCTCAGTCTGGTTCGATCTTAGACT
* *
21152838 GGGAATGAACTCTGTATG
326 AGGAATGAACTCAGTATG
* * * *
21152856 CTTAGACTATGG-ATGAACACTGTATGCCTAAGTCAACCCATGAAATGAGGGTACAGGTGCTCAG
1 CTTAGACT-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA--AGAG--C--GTG--C-G
*** * * * *
21152920 CGAGCCAAAGAGTCGGTCGGAGAGGCATAATGCGTAAGCCGAGGATC-AGCTCGGTCCCCTTCTG
56 -G-G-CGTTGAGTCGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCT-GGTCCCCCTCTA
* * *
21152984 CGTATTACCGATCCTACTGCCACAACCCCCGGT-TCGGCTGGGGTTTAGACATGGAATGAACTCC
117 CGTATTACCGATCCCACTGCCACAACCCCCGGTCT-AGCTGGGGCTTAGACATGGAATGAACTCC
* ** *** * *
21153048 GTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGGTCGGAGAGGTAGAATGCA
181 CTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAACCAACCGAAGAGGTAAAATGCA
* * *
21153113 CAAGTC-GAGGATC-GATCCGGTCCCCTCTGCGTGCTATCGATCCTGCTACTGTTCCTGCTACCG
246 CAAGCCAG-GGATCAG-CCCGGT-CCC-C--C---CTAT-G-TCCTG-T-C-GATCCTGCTACCG
21153176 CAACCCTCAGTCTGG-TCTGATCTTAGACTAGGAATGAACTCAGTATG
297 CAACCCTCAGTCTGGTTC-GATCTTAGACTAGGAATGAACTCAGTATG
* *
21153223 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGTTCAGT
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGTTGAGT
* * *
21153288 CGGTAGGAGAGGCAGAATGCCCAAG
66 CGGTCGGAGAGGCATAATGCGCAAG
21153313 TCGGGGTCAG
Statistics
Matches: 360, Mismatches: 66, Indels: 50
0.76 0.14 0.11
Matches are distributed among these distances:
343 37 0.10
344 2 0.01
345 2 0.01
347 1 0.00
349 2 0.01
351 1 0.00
353 1 0.00
354 6 0.02
355 189 0.52
356 4 0.01
357 2 0.01
358 1 0.00
359 2 0.01
361 3 0.01
362 4 0.01
363 2 0.01
364 4 0.01
365 4 0.01
366 6 0.02
367 87 0.24
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (343 bp):
CTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGTTGAGT
CGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCTGGTCCCCCTCTACGTATTACCGATCC
CACTGCCACAACCCCCGGTCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGAGCGTACGGGTGCTCAACCAACCGAAGAGGTAAAATGCACAAGCCAGGGATCAG
CCCGGTCCCCCCTATGTCCTGTCGATCCTGCTACCGCAACCCTCAGTCTGGTTCGATCTTAGACT
AGGAATGAACTCAGTATG
Found at i:21153576 original size:159 final size:156
Alignment explanation
Indices: 21153226--21153583 Score: 378
Period size: 157 Copynumber: 2.3 Consensus size: 156
21153216 CAGTATGCTT
** * *
21153226 AGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGTTCAGTCGG
1 AGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCACTCAGCCAG
* ** *
21153291 TAGGAGAGGCAGAATGCCCAAGTCGGGGTCAGACCCGATCCCCCTACGTGCTGTCGATCCTGCTG
65 TAGGAGAGGCAGAATGCCCAAGTCGGGATCAGACCCGATCCCCCTACGTGCTCCCGATCCCGCTG
* * * *
21153356 CCGCAACCCTCGATCTGATTCGATCTT
130 CCACAACCCTCGATCTGACTCGAGCTC
* * * *
21153383 AGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCCAG
1 AGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCACTCAGCCAG
* * ** * * *
21153448 TCGGAGAGGCATAATGTGCAAGTCGAGGATC-GGCCCGTTCCCCCTCTGCGTGCTACCCG-TCCC
65 TAGGAGAGGCAGAATGCCCAAGTCG-GGATCAGACCCGAT-CCCC-CTACGTGCT-CCCGATCCC
* * * *
21153511 GCTGCCACAACCCTCGGTCTGGCTGGGGCTC
126 GCTGCCACAACCCTCGATCTGACTCGAGCTC
* *
21153542 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 AGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
21153584 CGGGCACGCA
Statistics
Matches: 164, Mismatches: 31, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
156 1 0.01
157 82 0.50
158 8 0.05
159 70 0.43
160 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
AGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCACTCAGCCAGT
AGGAGAGGCAGAATGCCCAAGTCGGGATCAGACCCGATCCCCCTACGTGCTCCCGATCCCGCTGC
CACAACCCTCGATCTGACTCGAGCTC
Found at i:21154469 original size:26 final size:26
Alignment explanation
Indices: 21154418--21154470 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21154408 GGCTCAAACT
*
21154418 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21154444 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21154470 C
1 C
21154471 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21154797 original size:26 final size:26
Alignment explanation
Indices: 21154761--21154811 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
21154751 CCAGTTCAAT
*
21154761 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
21154787 CTTAGACTGGGGTTGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
21154812 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21155436 original size:158 final size:159
Alignment explanation
Indices: 21155171--21155599 Score: 382
Period size: 159 Copynumber: 2.7 Consensus size: 159
21155161 ACTCCGTATG
* *
21155171 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTAAGC
* * * * *
21155236 CGGCCGGAGAGGTACAATGCGCAAGCCGAGGTTCAACCCGGTCCCCC-CTATGTGCCGTCGATCT
66 CGACCGGAGAGGCACAATGCCCAAGCCGAGGATCAACCCGGTCCCCCTCCATGTGCCGTCGATCT
*
21155300 GGCTGTTGCAACCCTCGGTCTGGTCCAAT
131 CGCTGTTGCAACCCTCGGTCTGGTCCAAT
* * * * *
21155329 CTTAGAC-TAGGAATGAACTTCGTATGCGTAAGTCAACCCACGAAATGAGTGAT-CGGGCGCTAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CATACGGGCGCTAA
* * * * *
21155392 GCCGACCGGAGAGGCATAATGCCCAAGCC-AGGGATCGACTCGGTCCCCCTCCGTGTGCTGTCGA
64 GCCGACCGGAGAGGCACAATGCCCAAGCCGA-GGATCAACCCGGTCCCCCTCCATGTGCCGTCGA
*** * ** * ****
21155456 TCTCGCTGCCACAACCTTCAATCCGG-CTGGGG
128 TCTCGCTGTTGCAACCCTCGGTCTGGTC-CAAT
* * * * * * ** * *
21155488 CTTAGACATGGAATGAAGTCCCTACGCCTAAGCAAACCCACGAAACGGGCGTGTGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTAAGC
* * * * * *
21155553 CAACCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCC
66 CGACCGGAGAGGCACAATGCCCAAGCCGAGGATCAACCCGGTCCCCC
21155600 CTGCGTGCTG
Statistics
Matches: 214, Mismatches: 49, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 93 0.43
159 117 0.55
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.17
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTAAGC
CGACCGGAGAGGCACAATGCCCAAGCCGAGGATCAACCCGGTCCCCCTCCATGTGCCGTCGATCT
CGCTGTTGCAACCCTCGGTCTGGTCCAAT
Found at i:21155675 original size:26 final size:26
Alignment explanation
Indices: 21155646--21155698 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21155636 TCGATCCGAT
*
21155646 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21155672 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21155698 C
1 C
21155699 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21156353 original size:159 final size:158
Alignment explanation
Indices: 21156061--21156583 Score: 518
Period size: 159 Copynumber: 3.3 Consensus size: 158
21156051 GCTTAGATAT
* * * *
21156061 GGAATGAACTCCGTATGCCTAAGCCAACCAATGAAATGAGCGTACGGGCGCTGAGCCGGTCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACC-ATGAAATGAGCGTGCGGGTGCTGAGCCGGCCGGAG
* * * *
21156126 AGGCAGAATGCACAAGCCGGGGACCGACCCGGTCCGCCCT-TGCATGCTGTCGATCCTGCTACTG
65 AGGCAGAATGCACAAGCCGGGGATCGACCCGATCC-CCTTCTGCTTGCTGTCGATCCTGCTACTG
*
21156190 CAACCCTCGGTCCGGTCCGATCTTAGACTG
129 CAACCCTCAGTCCGGTCCGATCTTAGACTG
* * * *
21156220 GGAATGAACTCCGTATGCCTAAGTCAACCGACGAAATGAGCGTGCAGGTTCTGAGCCGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACC-ATGAAATGAGCGTGCGGGTGCTGAGCCGGCCGGAG
* * * * * * * **
21156285 AGCCATAATGCACAAGCCAGGGATCGACCCAATCCCCTTCTGCTTGCTGTCGGTCCCGCTGCCAC
65 AGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCTTCTGCTTGCTGTCGATCCTGCTACTGC
* **
21156350 AACCCTCAGTCCGG-CTGGGGCTTA-ACCAT-
130 AACCCTCAGTCCGGTC-CGATCTTAGA-C-TG
* * * * * * *
21156379 TGAATGAACTCCCTATGCCTAAGCCAATCCATGAAACGGGCGTGCGGGTGCTTAGCCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAA-CCATGAAATGAGCGTGCGGGTGCTGAGCCGGCCGGAG
* * * * * ** *
21156444 AGGTAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCTCCTG-TGTTCTACCGATCCTACTACTG
65 AGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCTTCTGCT-TGCTGTCGATCCTGCTACTG
* *
21156507 CAACCCTCAGTCCAGTCTGATCTTAGACTG
129 CAACCCTCAGTCCGGTCCGATCTTAGACTG
* * *
21156537 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAGTGAGTGTGCGG
1 GGAATGAACTCCGTATGCCTAAGCCAA-CCATGAAATGAGCGTGCGG
21156584 ATGCCCAACC
Statistics
Matches: 289, Mismatches: 66, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 82 0.28
159 202 0.70
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCATGAAATGAGCGTGCGGGTGCTGAGCCGGCCGGAGA
GGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCTTCTGCTTGCTGTCGATCCTGCTACTGCA
ACCCTCAGTCCGGTCCGATCTTAGACTG
Found at i:21156401 original size:882 final size:879
Alignment explanation
Indices: 21154444--21156554 Score: 2472
Period size: 885 Copynumber: 2.4 Consensus size: 879
21154434 ACTCTATATG
* ** * * *
21154444 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCAGGCGCTCAGT
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTAAGC
* * ** *
21154509 CGGCCGGAGAGGCAGAATGCACAAGCC-GAGGATCGGCTCGATCTCCCTCTGTGTGCTACCGGTG
65 CGGCCGGAGAGGCATAATGCACAAGCCAG-GGATCGACTCGATC-CCCTCTGTGTGCTGTCGGTC
** * *
21154573 CCGCTGCCACAACCCTTGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
128 CCGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * *
21154638 ACCCATGAAATGGGCGTGCGGGCGCTCAACCGGCCGAAGAGGTAGAATGCACAAGCCAGGGATCG
193 ACCCATGAAACGGGCGTGCGGGCGCTCAGCCGACCGAAGAGGTAGAATGCGCAAGCGA-GGATCG
* * * * * *
21154703 GCCCGGTCCCCCCTGCATGCTGTCGATCCTGCTACCGCAACCC-TCGATCCAGTTCAATCTTAGA
257 GCCCGATCCCCCCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTAGATCCAGTCCGATCTTAGA
* *
21154767 CTGGGAATGAACTCTGTATGCTTAGACTGGGGTTGAACTCCGTATACCTAAGTCAACCCATGAAA
322 CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATACCTAAGTCAACCCATGAAA
* * * ** * **
21154832 CGAGCGTTCGGGCGCTCAGCTAGTGGGAGAGGTCAGCCGGAGAGGCAGAATGCGCAAGCTGGGGA
387 CGAGCGTGCGGGCACTCAGCCAGCCGGAGAGGCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGA
* * * * * * * * *
21154897 TTAGTCCGATTCCCCCTACGTGCTATCGATCCTACTGCTGGTCCTGCTGCTATAACCCTCGGTCC
452 TCAGACCGATCCCCCCTACGTGCGACCGATCCCACTGCCGGTCCTGCTGCTACAACCCTAGGTCC
* *
21154962 GGTCCGATCTTAGACAGGGAATGGGAATGAACTCCGTATGCCTAAGCCAAGCCACAAAACGAGCG
517 GGTCCGAGCTTAGAC---G-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCG
* * * * * *
21155027 TGCGGGCACTCAGCCGACTGAAGAGGCAGAATTCATAAGCCGGGGACCGGCCCAGTCCCCCTGCA
578 TGCAGGCACTCAGCCGACCGAAGAGGCAGAATGCACAAGCCAGGGACCGGCCCAGTCCCCCCGCA
* * *
21155092 TGCTATCAGTCCTGCTACTGGTCCTGCTGCCACAACCCTTGGTCCGATCTGATCTTAGATTGGGA
643 TGCTATCAGTCCTGCTACTGGTCCTGCAGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGA
* *
21155157 ATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCA
708 ATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCA
* * * * **
21155222 TACGGGCGCTCAGTCGGCCGGAGAGGTACAATGCGCAAGCCGAGGTTCAACCCGGTCCCCCCTAT
773 TACGGGCGCTCAGCCGGCCAGAGAGGCACAATGCACAAGCCGAGGACCAACCCGGTCCCCCCTAT
** *
21155287 GTGCCGTCGATCTGGCTGTTGCAACCCTCGGTCTGGTCCAAT
838 GTGCCGTCGATCTGGCTACTGCAACCCTCGGTCCGGTCCAAT
* * * *
21155329 CTTAGACTAGGAATGAACTTCGTATGCGTAAGTCAACCCACGAAATGAGTGAT-CGGGCGCTAAG
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCG-TGCAGGCGCTAAG
* * * * *
21155393 CCGACCGGAGAGGCATAATGCCCAAGCCAGGGATCGACTCGGTCCCCCTCCGTGTGCTGTCGATC
64 CCGGCCGGAGAGGCATAATGCACAAGCCAGGGATCGACTCGAT-CCCCTCTGTGTGCTGTCGGTC
* * * * * *
21155458 TCGCTGCCACAACCTTCAATCCGGCTGGGGCTTAGACATGGAATGAAGTCCCTACGCCTAAGCAA
128 CCGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * *
21155523 ACCCACGAAACGGGCGTGTGGGCACTCAGCCAACCGGAGAGGCAGAATGCGCAAGTCGAGGATCG
193 ACCCATGAAACGGGCGTGCGGGCGCTCAGCCGACCGAAGAGGTAGAATGCGCAAG-CGAGGATCG
* * * * *
21155588 ACCCGATCCCCCCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTTGGATCGA-TCCGATCTTAGA
257 GCCCGATCCCCCCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTAGATCCAGTCCGATCTTAGA
* * *
21155652 TTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAA
322 CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATACCTAAGTCAACCCATGAAA
* * * *
21155717 CGAGCGTGCGGGCATTCAGCCAGCCGGAGAGGCCGGTCGGAGAGGCATAATGCGCAAGCCAGGGA
387 CGAGCGTGCGGGCACTCAGCCAGCCGGAGAGGCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGA
** *
21155782 TCA-ACCTGATCCCCCTCTACGTGCGACCGATCCCGTTGCCGGTCCTGCTG-TCACAACCCTATG
452 TCAGACC-GATCCCCC-CTACGTGCGACCGATCCCACTGCCGGTCCTGCTGCT-ACAACCCTAGG
* * * ** *
21155845 TCCGG-CTGGGGCTTAGAC-AT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCG
514 TCCGGTC-CGAGCTTAGACGATGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCG
* * * * *** *
21155907 TGCAGGCACTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGTTTGGCTC-GATCCCTCCCG
578 TGCAGGCACTCAGCCGACCGAAGAGGCAGAATGCACAAGCCAGGGACCGGCCCAG-TCCC-CCCG
* * * * * *
21155971 CATGCTGTC-GATCCTGTTGCTGGTCCTGCAGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTG
641 CATGCTATCAG-TCCTGCTACTGGTCCTGCAGCCACAACCCTCGGTCCGATCTGATCTTAGACTG
* * *
21156035 GGAATGAACTCCATATGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAATGA
705 GGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGA
* * * * * * *
21156100 GCGTACGGGCGCTGAGCCGGTCAGAGAGGCAGAATGCACAAGCCGGGGACCGACCCGGTCCGCCC
770 GCATACGGGCGCTCAGCCGGCCAGAGAGGCACAATGCACAAGCCGAGGACCAACCCGGTCCCCCC
* *
21156165 T-TGCATGCTGTCGATCCT-GCTACTGCAACCCTCGGTCCGGTCCGAT
835 TATG--TGCCGTCGAT-CTGGCTACTGCAACCCTCGGTCCGGTCCAAT
* ** *
21156211 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAATGAGCGTGCAGGTTCTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTAAGC
* * *
21156276 CGGCCGGAGAGCCATAATGCACAAGCCAGGGATCGACCCAATCCCCTTCTGCT-TGCTGTCGGTC
65 CGGCCGGAGAGGCATAATGCACAAGCCAGGGATCGACTCGATCCCC-TCTG-TGTGCTGTCGGTC
*
21156340 CCGCTGCCACAACCCTCAGTCCGGCTGGGGCTTA-ACCATTGAATGAACTCCCTATGCCTAAGCC
128 CCGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGA-CATGGAATGAACTCCCTATGCCTAAGCC
* * * *
21156404 AATCCATGAAACGGGCGTGCGGGTGCTTAGCCGACCGAAGAGGTAGAATGCGCAAGCCGGGGATC
192 AACCCATGAAACGGGCGTGCGGGCGCTCAGCCGACCGAAGAGGTAGAATGCGCAAG-CGAGGATC
* * * * * * * *
21156469 GGCCCGATCCCTCCTGTGTTCTACCGATCCTACTACTGCAACCCTCAG-TCCAGTCTGATCTTAG
256 GGCCCGATCCCCCCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTAGATCCAGTCCGATCTTAG
21156533 ACTGGGAATGAACTCCGTATGC
321 ACTGGGAATGAACTCCGTATGC
21156555 CTAAGTCAAC
Statistics
Matches: 1022, Mismatches: 183, Indels: 45
0.82 0.15 0.04
Matches are distributed among these distances:
879 1 0.00
880 84 0.08
881 180 0.18
882 313 0.31
883 3 0.00
884 3 0.00
885 378 0.37
886 60 0.06
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (879 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTAAGCC
GGCCGGAGAGGCATAATGCACAAGCCAGGGATCGACTCGATCCCCTCTGTGTGCTGTCGGTCCCG
CTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CATGAAACGGGCGTGCGGGCGCTCAGCCGACCGAAGAGGTAGAATGCGCAAGCGAGGATCGGCCC
GATCCCCCCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTAGATCCAGTCCGATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATACCTAAGTCAACCCATGAAACGAG
CGTGCGGGCACTCAGCCAGCCGGAGAGGCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCAG
ACCGATCCCCCCTACGTGCGACCGATCCCACTGCCGGTCCTGCTGCTACAACCCTAGGTCCGGTC
CGAGCTTAGACGATGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCA
CTCAGCCGACCGAAGAGGCAGAATGCACAAGCCAGGGACCGGCCCAGTCCCCCCGCATGCTATCA
GTCCTGCTACTGGTCCTGCAGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTC
CATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCATACGGGCG
CTCAGCCGGCCAGAGAGGCACAATGCACAAGCCGAGGACCAACCCGGTCCCCCCTATGTGCCGTC
GATCTGGCTACTGCAACCCTCGGTCCGGTCCAAT
Found at i:21157128 original size:26 final size:26
Alignment explanation
Indices: 21157077--21157129 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21157067 GGCTCAAACT
*
21157077 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21157103 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21157129 C
1 C
21157130 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21157667 original size:26 final size:26
Alignment explanation
Indices: 21157629--21157681 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21157619 CTGGTCAGAT
**
21157629 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
21157655 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
21157681 C
1 C
21157682 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:21158513 original size:26 final size:26
Alignment explanation
Indices: 21158484--21158536 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21158474 CTGGTCCGAT
* *
21158484 CTTAGGCTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21158510 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21158536 C
1 C
21158537 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.32, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21158831 original size:170 final size:172
Alignment explanation
Indices: 21158522--21158838 Score: 381
Period size: 172 Copynumber: 1.9 Consensus size: 172
21158512 TAGACTGGGG
* * * ** **
21158522 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAGGCTGGCCGAAGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCAGGTGCTCAGGCCAGCCGAAGAG
* * * * *
21158587 GCAAAATGCGCAAGCTGGGGATTAGCCTGATCCCCCTCTGCGTGCTGTCGATCCCGCTACCGGTC
66 GCAAAATGCACAAGCTGGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCCGCTACCAGTC
*
21158652 CTGCTACCACAACCCTCGGTCTGGCTAGGGCTCAAACATGGA
131 CTACTACCACAACCCTCGGTCTGGCTAGGGCTCAAACATGGA
* * *
21158694 ATGAACTCTGTATGCTTAAGCCAACCCATGAAACAAGCATGCAGGTGCTTA-GCCAGCC-AGAGA
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCAGGTGCTCAGGCCAGCCGA-AGA
* * * * * * *
21158757 GGTAAAATGCACAAG-TCGGGGATCGGCCCGGTCCCCC-CTACGTGCTGTCGATCCTGGTGCTAG
65 GGCAAAATGCACAAGCT-GGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCCGCTACCAG
21158820 TCCTACTACCACAACCCTC
129 TCCTACTACCACAACCCTC
21158839 AGTCCGGTCT
Statistics
Matches: 120, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
170 40 0.33
171 37 0.31
172 43 0.36
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (172 bp):
ATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCAGGTGCTCAGGCCAGCCGAAGAG
GCAAAATGCACAAGCTGGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCCGCTACCAGTC
CTACTACCACAACCCTCGGTCTGGCTAGGGCTCAAACATGGA
Found at i:21158867 original size:170 final size:172
Alignment explanation
Indices: 21158509--21158881 Score: 398
Period size: 170 Copynumber: 2.2 Consensus size: 172
21158499 AGCTCCGTAT
* * * * * **
21158509 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACAAGCATGCAGGTGCTCAG
** * * * *
21158574 GCTGGCCGAAGAGGCAAAATGCGCAAGCTGGGGATTAGCCTGATCCCCCTCTGCGTGCTGTCGAT
66 GCCAGCCGAAGAGGCAAAATGCACAAGCTGGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGAT
* * * * *
21158639 CCCGCTACCGGTCCTGCTACCACAACCCTCGGTCTGGCTAGG
131 CCCGCTACCAGTCCTACTACCACAACCCTCAGTCCGGCTAGA
* * * *
21158681 GCTCAAACAT-GGAATGAACTCTGTATGCTTAAGCCAACCCATGAAACAAGCATGCAGGTGCTTA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACAAGCATGCAGGTGCTCA
* * *
21158745 -GCCAGCC-AGAGAGGTAAAATGCACAAG-TCGGGGATCGGCCCGGTCCCCC-CTACGTGCTGTC
65 GGCCAGCCGA-AGAGGCAAAATGCACAAGCT-GGGGATCAGCCCGATCCCCCTCTACGTGCTGTC
* * * *
21158806 GATCCTGGTGCTAGTCCTACTACCACAACCCTCAGTCCGGTCT-GA
128 GATCCCGCTACCAGTCCTACTACCACAACCCTCAGTCCGG-CTAGA
*
21158851 GCTTAGACTGGGAATGAACTCCATATGCTTA
1 GCTTAGACTGGGAATGAACTCCGTATGCTTA
21158882 GACATGGAAT
Statistics
Matches: 163, Mismatches: 33, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
169 1 0.01
170 71 0.44
171 39 0.24
172 51 0.31
173 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (172 bp):
GCTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACAAGCATGCAGGTGCTCAG
GCCAGCCGAAGAGGCAAAATGCACAAGCTGGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGAT
CCCGCTACCAGTCCTACTACCACAACCCTCAGTCCGGCTAGA
Found at i:21164145 original size:26 final size:26
Alignment explanation
Indices: 21164116--21164168 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21164106 CCGATCCAAT
*
21164116 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
*
21164142 CTTAGACATGGAATAAACTCTGTATG
1 CTTAGACATGGAATAAACTCCGTATG
21164168 C
1 C
21164169 CTAAGCAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:21165026 original size:26 final size:25
Alignment explanation
Indices: 21164997--21165048 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
21164987 CCAATCTGAT
21164997 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCC-TATG
*
21165023 CTTAGACTGGGGATGAACTCCTATG
1 CTTAGACTGGGAATGAACTCCTATG
21165048 C
1 C
21165049 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCCTATG
Found at i:21165751 original size:26 final size:26
Alignment explanation
Indices: 21165713--21165765 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
21165703 GGCTCAAACT
*
21165713 CTTAGACTGGGAAT-AAGCTCCTTATG
1 CTTAGACTGGGAATGAA-CTCCATATG
21165739 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21165765 C
1 C
21165766 CTAAGCCAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21166091 original size:26 final size:26
Alignment explanation
Indices: 21166055--21166107 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21166045 CTGGTCTGAT
*
21166055 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21166081 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21166107 C
1 C
21166108 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21167527 original size:26 final size:25
Alignment explanation
Indices: 21167486--21167537 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
21167476 GGCTCAAAAT
*
21167486 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTAGAATGAACTCCGTATG
*
21167511 CTTAGACATAGAATGAACTCCTTATG
1 CTTAGAC-TAGAATGAACTCCGTATG
21167537 C
1 C
21167538 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (25 bp):
CTTAGACTAGAATGAACTCCGTATG
Found at i:21168123 original size:159 final size:158
Alignment explanation
Indices: 21167779--21168368 Score: 534
Period size: 158 Copynumber: 3.7 Consensus size: 158
21167769 AGGTCAGCCA
* * * ** * ** *
21167779 GAGAGGCATAATGCGTAAGTC-GAGGATCAGCCCGGTCCCCCTCTGCATGCTGCCGGTCCTGCTA
1 GAGAGGCAGAATGCGTAAGCCAG-GGATCGGCCCGGTCCCTTTCTTCATGCTATCGATCCTGCTA
** * ** * *
21167843 CCACAACCCTCGGTCC-GACTGGGGCTTAGAC-ATGGAATGAACTCTGTATGCCTAAGCCAACCC
65 -CGTAACCCTCGGTCCAGTCT-GATCTTAGACTA-GGAATGAACTCTGTATGCCTAAGTCAACCT
* * * *
21167906 ATGAAACGAGCGTGTGGTCGCTCAGCCTG-TCG
127 ACGAAACGAGCGTGCGGGCGCTCAGCC-GACCG
** * ** * * * *
21167938 GAGAGGCAGAATATGCAAGCTGGGGATCGGTCCAGTCCCTTTCTTCATGCTGTCGATCCTGCTGC
1 GAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCTTTCTTCATGCTATCGATCCTGCT-A
* * * * *
21168003 CAG-AGCCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTTAAGCTAC
65 C-GTAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCTAC
* *
21168067 GAAACGAACGTGCGGGCGCTCAGCCGACCA
129 GAAACGAGCGTGCGGGCGCTCAGCCGACCG
* * *
21168097 GAGAGGCAGAATGCGTAAGCCAGGGATCAGCCCGGTCCCCTTT-GT-GTGCTATCGATCCTGCTA
1 GAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGT-CCCTTTCTTCATGCTATCGATCCTGCTA
* * * * *
21168160 TTGTAACCCACGGT-CTGATTTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCTA
65 -CGTAACCCTCGGTCCAG-TCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCTA
* * * *
21168224 CGAAACGAGCGTACGCGCGCTGAGTCGACCG
128 CGAAACGAGCGTGCGGGCGCTCAGCCGACCG
*
21168255 GAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCC--TCTTGCATACTATCGATCCTGCTA
1 GAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCTTTCTT-CATGCTATCGATCCTGCTA
* * *
21168318 TCGTAACCCTCGGGCTAGTCTGATCTTAGACTAGGAATGAACTCTATATGC
65 -CGTAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCTGTATGC
21168369 TTAGAATGGG
Statistics
Matches: 345, Mismatches: 72, Indels: 29
0.77 0.16 0.07
Matches are distributed among these distances:
155 1 0.00
156 1 0.00
157 6 0.02
158 181 0.52
159 145 0.42
160 11 0.03
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (158 bp):
GAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCTTTCTTCATGCTATCGATCCTGCTAC
GTAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCTACGA
AACGAGCGTGCGGGCGCTCAGCCGACCG
Found at i:21169115 original size:26 final size:26
Alignment explanation
Indices: 21169077--21169129 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21169067 GGCTCAAAAT
* *
21169077 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
21169103 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
21169129 C
1 C
21169130 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:21169614 original size:26 final size:26
Alignment explanation
Indices: 21169578--21169630 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21169568 CCAGTTTGAT
21169578 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
21169604 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
21169630 C
1 C
21169631 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:21170136 original size:159 final size:157
Alignment explanation
Indices: 21169738--21170278 Score: 441
Period size: 158 Copynumber: 3.4 Consensus size: 157
21169728 GTCGATCCCG
*
21169738 CTGTCGATCCTGCTGGAACAACCCTCGGTCCGG-TCGGGGCTTAGACATGGAATGAACTCCGTAT
1 CTGTCGATCCTGCTGCAACAACCCTCGGTCCGGCT-GGGGCTTAGACATGGAATGAACTCCGTAT
* * * * * * *
21169802 GCCTAA-CCTAACCCATGAAACGAGCATACCGGCGCTCAGCCGACTGGAGAGGCATAATGCGCAA
65 GCCTAAGCC-AACCCACGAAACGAGCGTACGGGCGCTCAGCAGTC-GGAGAGGTATAATGCACAA
* * ** *
21169866 GTCGAGGATCAGTTCGGTCCCCCCTGCGTG
128 GCCGAGGATCGGCCCGGTCCCCCCTGCGTA
* * *** * ** ** *
21169896 CTGTAGATCCTACTGCTGTAACCCTCGATCCAATCT-GATCTTAGAC-TGGCAATGAACTTCGTA
1 CTGTCGATCCTGCTGCAACAACCCTCGGTCC-GGCTGGGGCTTAGACATGG-AATGAACTCCGTA
* ** ** * * * *
21169959 TGCATAAGTTAACCCACGAAACGAGCGTTTGGGCGTTGAGCTGGTCGAAGAGGTATAATGCACAA
64 TGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC-AGTCGGAGAGGTATAATGCACAA
*
21170024 GCCAAGGATCGGCCCGGTCCCCCTCTGCGTA
128 GCCGAGGATCGGCCCGGTCCCCC-CTGCGTA
* * *
21170055 CTGTCGATCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATG
1 CTGTCGATCCTGCTGCAACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATG
** * * * * * *
21170120 CCTAAGCCAATGCACGAAACGGGTGTACGGGTGCTCAGCCAGTTGGAGGGGTAGAATGCACAAGC
66 CCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG-CAGTCGGAGAGGTATAATGCACAAGC
* *
21170185 CGAGGATCGGCCCTGTCCCCCCTGCGTG
130 CGAGGATCGGCCCGGTCCCCCCTGCGTA
* * * * **
21170213 CTG-CAGATCCTACTG-ATGCAACCCTCAGTCTGGTCT-GATCTTAGAC-TGGGAATGAACTCCG
1 CTGTC-GATCCTGCTGCA-ACAACCCTCGGTCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCG
21170274 TATGC
62 TATGC
21170279 TTACACTAGG
Statistics
Matches: 295, Mismatches: 75, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
157 5 0.02
158 165 0.56
159 120 0.41
160 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CTGTCGATCCTGCTGCAACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATG
CCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCAGTCGGAGAGGTATAATGCACAAGCC
GAGGATCGGCCCGGTCCCCCCTGCGTA
Found at i:21170630 original size:26 final size:26
Alignment explanation
Indices: 21170594--21170646 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21170584 CCAATCCCAT
*
21170594 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21170620 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21170646 C
1 C
21170647 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21170732 original size:342 final size:339
Alignment explanation
Indices: 21169935--21171025 Score: 1001
Period size: 343 Copynumber: 3.2 Consensus size: 339
21169925 CCAATCTGAT
* * * * * ** ** ** *
21169935 CTTAGACTGGCAATGAACTTCGTATGCATAAGTTAACCCACGAAACGAGCGTTTGGGCGTTGAGC
1 CTTAGACTGG-GATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGATCACTCAGC
* * * * * * * * *
21170000 TGGTCGAAGAGGTATAATGCACAAGCC-AAGGATCGGCCCGGTCCCCCTCTGCGTACTGTCGATC
65 CGGCCGAAGAGGCATAATACACAAGCCGGA-GATCAGCACAGTCCCCCTCTGCGTACTGTCGGTC
*
21170064 CCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
129 CCGCTGCCAC-ATCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
** * * * * * *
21170129 ATGCACGAAACGGGTGTACGGGTGCTCAGCC-AGTTGGAGGGGTAGAATGCACAAGCCGAGGATC
193 ACCCACGAAACGGGTGTGCAGGTGCTCAGCCGA-TCGGAGAGGTAGAATGCACAAGCTGGGGATC
* * * * *
21170193 GGCCCTGTCCCCCCTGCGTGCTG-CAGATCCTACTGAT-GCAACCCTCAGTCTGGTCTGATCTTA
257 -GCCCGGT-CCCCCTGCGTGCTGTC-GATCCTGCTG-TCGCAACCCTCGGTCCGATCTGATCTTA
*
21170256 GACTGGGAATGAACTCCGTATG
318 GACTGGGAATGAACTCTGTATG
* * * * *
21170278 CTTACACTAGGGATGAACTCCGTACGCATAAGTCAACCCATGAAACGAGCGTGCGATCACTGAGC
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGATCACTCAGC
* * * * *
21170343 CGGCCGAAGAGGCATAATGCACAAGCTGGAGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGGTCC
65 CGGCCGAAGAGGCATAATACACAAGCCGGAGATCAGCACAGTCCCCCTCTGCGTACTGTCGGTCC
21170408 CGCTGCCACATCCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
130 CGCTGCCACATCC-TCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * *
21170473 CCCACGAAACGGGTGTGCAGGCGCTCAACCGATCGGAGAGGTAGAATGCATAAGCTGGGGACCTG
194 CCCACGAAACGGGTGTGCAGGTGCTCAGCCGATCGGAGAGGTAGAATGCACAAGCTGGGGATC-G
* * **
21170538 CCCGGTCCCCCTGCGTGCTGTCGATCCTGCTGTCGTAACCCTCGGTCCAATCCCATCTTAGACTG
258 CCCGGTCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTG
21170603 GGAATGAACTCTGTATG
323 GGAATGAACTCTGTATG
* * *
21170620 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCTTACAGGT-GCTCCA
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTAC-GATCACT-CA
* ** *
21170684 GCCGGTCG-AGAGGCATAATACGTAAGCCGGGGATCAGCACAGTCCCCCTTTGTGTGCTGCTGAT
63 GCCGGCCGAAGAGGCATAATACACAAGCCGGAGATCAGCACAGTCCCCC------T-CTGC-G-T
* ** * ** * *
21170748 CCCACTGCCGGTCTTGCTGCCATAATCCTCAATCCGGCTAGGGCTTAGACATGGAATGAACTCCG
119 ---ACTGTCGGTCCCGCTGCCA-CATCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCC
* ** * * * * * * * *
21170813 TATGCCTAAACCAACCCACGAAACAAGCGTGCCGGTGCTCAGTCGGTCAGAGAGGCAAAATGCGC
180 TATGCCTAAGCCAACCCACGAAACGGGTGTGCAGGTGCTCAGCCGATCGGAGAGGTAGAATGCAC
* * * * * *
21170878 AAGCTGGGGATCGACTCGATCCCCCTACATGCTGTCGATCCTGCTGCCGCAACCTTCGGTCCGAT
245 AAGCTGGGGATCG-CCCGGTCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGAT
* * *
21170943 CTGATCTTCGATTGAGAATGAACT-TCGTATG
309 CTGATCTTAGACTGGGAATGAACTCT-GTATG
* * * **
21170974 CTTAGTTA-TGGAATGAACTCCGTATGCCTAAGCCAACCTACAAAACGAGCGT
1 CTTAG--ACTGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
21171026 GAGGGCGCTC
Statistics
Matches: 619, Mismatches: 104, Indels: 39
0.81 0.14 0.05
Matches are distributed among these distances:
341 1 0.00
342 149 0.24
343 231 0.37
344 4 0.01
348 1 0.00
349 4 0.01
350 1 0.00
351 1 0.00
353 2 0.00
354 219 0.35
355 5 0.01
356 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (339 bp):
CTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGATCACTCAGCC
GGCCGAAGAGGCATAATACACAAGCCGGAGATCAGCACAGTCCCCCTCTGCGTACTGTCGGTCCC
GCTGCCACATCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGGGTGTGCAGGTGCTCAGCCGATCGGAGAGGTAGAATGCACAAGCTGGGGATCGCCC
GGTCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGA
ATGAACTCTGTATG
Found at i:21179592 original size:26 final size:26
Alignment explanation
Indices: 21179563--21179632 Score: 140
Period size: 26 Copynumber: 2.7 Consensus size: 26
21179553 TCTTAGATTG
21179563 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
21179589 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
21179615 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
21179633 CTAAGCTAAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGACAT
Found at i:21180183 original size:26 final size:26
Alignment explanation
Indices: 21180154--21180206 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21180144 CCGGTCTGAT
*
21180154 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
21180180 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21180206 C
1 C
21180207 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21180568 original size:159 final size:158
Alignment explanation
Indices: 21180183--21180597 Score: 406
Period size: 159 Copynumber: 2.6 Consensus size: 158
21180173 CTGTATGCTT
* *
21180183 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAACCGA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAGCCGA
* * * * * * * *
21180248 CCAGAGAGGCAGAATGCGCAAGCTAGGGACCGACCAAGTCCCCCCCTGTGTGCTATCGATCCTGC
66 TCGGAAAGGCAGAATGCGCAAGCGA-GGATCGACCAAGTCCCCCCCTATGTGCTATAGATCCCGC
* * *
21180313 TGCCACAACCCTCAATCCAGTCTGATCTT
130 TGCCACAACCCTCAATCCAGACTGAGCTG
* * * * * * **
21180342 AGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTAGGCATTGAGTTG
1 AGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAGCCG
* * * * *
21180406 ATCGGAAAGGCATAATGCGTAAGTCGAGGATCGACTCGA-TCCCCCTCTATGTGCTGCTAG-TCC
65 ATCGGAAAGGCAGAATGCGCAAG-CGAGGATCGAC-CAAGTCCCCCCCTATGTGCT-ATAGATCC
* ** *
21180469 CGCTGCCACAACCTTCGGT-CTGACTGAGGCTG
127 CGCTGCCACAACCCTCAATCCAGACTGA-GCTG
* * * *
21180501 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCACTCAGCCGA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAGCCGA
* * *
21180566 TCGGACAGGTAGAATGCGCAAGCCGGGGATCG
66 TCGGAAAGGCAGAATGCGCAAG-CGAGGATCG
21180598 GTCCTGTCCC
Statistics
Matches: 202, Mismatches: 48, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
158 7 0.03
159 188 0.93
160 7 0.03
ACGTcount: A:0.27, C:0.29, G:0.26, T:0.18
Consensus pattern (158 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAGCCGA
TCGGAAAGGCAGAATGCGCAAGCGAGGATCGACCAAGTCCCCCCCTATGTGCTATAGATCCCGCT
GCCACAACCCTCAATCCAGACTGAGCTG
Found at i:21181413 original size:26 final size:26
Alignment explanation
Indices: 21181376--21181428 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21181366 GGCTCAAAAT
*
21181376 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
21181402 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
21181428 C
1 C
21181429 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:21181756 original size:159 final size:158
Alignment explanation
Indices: 21181401--21181815 Score: 426
Period size: 159 Copynumber: 2.6 Consensus size: 158
21181391 AACTTCGTAT
* * *
21181401 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAACTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGCTGTGCGGGCGCTCAG
* * * * *
21181466 CCGGCCGGAGAGGCAAAATGCGCAAGCCAAGGATCAGCCTGGTCCCCTCTGCGTGCTGTCAATCC
66 CCGGTCGGAGAGGCAAAATGCGCAAGTCGAGGAACAGCCCGGTCCCCTCTGCGTGCTGTCAATCC
** * * * *
21181531 TGCTGTCGTAACCCTCGGTCCGATCTGA
131 CACTGCCATAACCCTAGGTCAGATCTGA
* * * *
21181559 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGC-GTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-AGCTGTGCGGGCGCTC
* * * * * *
21181622 AGCCAGTCGAAGAGGCATAATGCGCAAGTCGGGGAACGGCCCGGTCCTCCTCTGCGTGCTG-CTG
64 AGCCGGTCGGAGAGGCAAAATGCGCAAGTCGAGGAACAGCCCGGTCC-CCTCTGCGTGCTGTC-A
* * * *
21181686 GTCCCACTGCCATAGCCCTTAGTTCAG-T-TGGG
127 ATCCCACTGCCATAACCC-TAGGTCAGATCT-GA
* * * * *
21181718 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATAGCTGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGCTGTGCGGGCGCTCAG
* *
21181783 CCGGTCGGAGAGGCAGAATGCGTAAGTCGAGGA
66 CCGGTCGGAGAGGCAAAATGCGCAAGTCGAGGA
21181816 TCGACTCGGT
Statistics
Matches: 207, Mismatches: 42, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 93 0.45
159 107 0.52
160 6 0.03
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGCTGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAAAATGCGCAAGTCGAGGAACAGCCCGGTCCCCTCTGCGTGCTGTCAATCC
CACTGCCATAACCCTAGGTCAGATCTGA
Found at i:21182282 original size:26 final size:26
Alignment explanation
Indices: 21182244--21182296 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21182234 CTGGTCTAAT
*
21182244 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
21182270 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
21182296 C
1 C
21182297 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:21183188 original size:26 final size:26
Alignment explanation
Indices: 21183137--21183189 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21183127 CCGGTCTGAT
* *
21183137 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21183163 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21183189 C
1 C
21183190 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21183727 original size:698 final size:693
Alignment explanation
Indices: 21182269--21184587 Score: 2400
Period size: 698 Copynumber: 3.3 Consensus size: 693
21182259 AACTTTGTAT
** * * **
21182269 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCATTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * * * * * ** *
21182334 TCAGTCAGAGAGGCAGAATGCGCAAGTCAGGGACCGACCTGGTCCCCCCTGCGTGCTGAGGATCT
66 CCAGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCTAGTCCCCCCTGCGTGCTGTCGATCC
* *
21182399 TGCTACCGCAACCCTCAGTCCGATC-AGATCTTGGACTGGGAATGAA-GTCTGTATGCTTAGACT
131 TGCTACCGCAACCCTCAGTCCGATCTA-ATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACT
* * * * * **
21182462 GGGGATAAACTCCGTAAGCCTAAGTCAACCCACGAATCAAACGTGTAGGCGCTCAGCCGGTCGAA
194 GGGGATGAACTCCGTATGCCTAAGTCAACCCAAGAAACAAGCGTGT-GGCGCTCAGCCGACCGAA
* * * * * **
21182527 AAGGCCGACTGAAAAGGTAAAATGCATAAGTCAAGGCTTGACCTGATCCCCCCTGCGTGCTGTCG
258 GAGG-C-A--G--AA--T--ACTG--TAAGTC-AGGATCGACCCGATCCCCCCTGCGTGCTACCG
** * * ** * *
21182592 ATCTTGCTGCTGGTATTGCTGCCGCAACCCTCAGTCCGATCCAATCTTAAACTGAGAATGAACTT
310 ATCTTGCTGCTGGTCCTGCTGCCGAAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTT
* * *
21182657 CGTATGCTTAGACGTGGAATGAACTCCGCATGCCTAAGCCAATCCACGAAACGAGCGTGCGGGCG
375 CGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCG
* * * * * * *
21182722 CTCAGCCGA-CTGAAGAGGTAAAATGCGTAAGCTGGGGATCGACTCGGTCCCCCCTCCGTGCTGT
440 CTCAGCCGATC-GGAGAGGTAGAATGCGCAAGC-GAGGACCGACTCGATCCCCCCTGCGTGCTGT
* * * *
21182786 CGATCTTGCTGCCGCAACCCTCGGTTTGGTCCGATCTTAGACTAGGAATGAACT-CGTATGCCTA
503 CGATCTTGCTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * ** * *
21182850 AGTCAACCCATGAAACGAGCGTACGGGCGTTGACCCGACCGGAGAGTTATAATGCGCAAGTCGAG
568 AGTCAACCCACGAAACGAGCGTTCGGGCGCTGAGCCGACCGGAGAGGCATGAT-CGCAAGCCG-G
* * *
21182915 GATCGACTCGATCCCCCTCTACGTGCTGCTAGTCCCGCTGCCACAACCCTCAGT-CAGGC-TGG
631 GATCGACCCGATCCCCCTCTGCGTGCTGCTAGTCCCGCTGCCACAACCATCAGTCCA-GCTTGG
* * *
21182977 CGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGTAACGGGCGTGCGGGTGCTCA
1 -GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCA
* * *
21183042 ACCAGCCGGAGAGGCAGAATGCACAA-ACTAGGGATCGGCCTAGTCCCCCCTGCGTGCTGTCGAT
65 GCCAGCCGGAGAGGCAGAATGCGCAAGTC-AGGGATCGGCCTAGTCCCCCCTGCGTGCTGTCGAT
* ** ** * *
21183106 CCTGCTGCCATAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACT
129 CCTGCTACCGCAACCCTCAGTCCGATCTAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACT
* *
21183171 GGGGATGAACTCCATATGCCTAAGTCAACCCAAGAAACAAGCGTATGGACGCTCAGCCGACCGAA
194 GGGGATGAACTCCGTATGCCTAAGTCAACCCAAGAAACAAGCGTGTGG-CGCTCAGCCGACCGAA
* * ** * *
21183236 GAGGCAGCAT-CTGTAAGCCGAGGATCCCCCCG-TCCCCCCTTACGTGCTACCGATCTTGCTACT
258 GAGGCAGAATACTGTAAGTC-AGGATCGACCCGATCCCCCC-TGCGTGCTACCGATCTTGCTGCT
* * * *
21183299 GGTCCTGCTGCCAAAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCTTAC
321 GGTCCTGCTGCCGAAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAG
* * * * * *
21183364 ACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCACTCAACCGATC
386 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATC
* * * *
21183429 GGAGAGGCAGAATGCGCAAGTCGAGGACCGACCCGATCCCCCCCTGCATGCTGTCTATCTTGCTA
451 GGAGAGGTAGAATGCGCAAG-CGAGGACCGACTCGAT-CCCCCCTGCGTGCTGTCGATCTTGCTA
*
21183494 CCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
514 CCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * *
21183559 GAAATGAGCGTTCGGGCGCTGAGCCGATCGGAGAGGCATGATACGCAAGCCAGGGATTGGCCCGA
579 GAAACGAGCGTTCGGGCGCTGAGCCGACCGGAGAGGCATGAT-CGCAAGCC-GGGATCGACCCGA
* * *
21183624 TCCCACTCTGCGTGCTGCTGGTCCCGCTGCCACAACCATCGGTCCAGCTTGG
642 TCCCCCTCTGCGTGCTGCTAGTCCCGCTGCCACAACCATCAGTCCAGCTTGG
* * *
21183676 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * * * * * * *
21183741 CCGGCCGGAGAGGTAGAATACGCAAGTC-GAGGATCGGTCGAGTCCCACTTACGTGCTGTCGATC
66 CCAGCCGGAGAGGCAGAATGCGCAAGTCAG-GGATCGGCCTAGTCCCCCCTGCGTGCTGTCGATC
* * * * * *
21183805 CTGCTATCGCAACCTTCGGTACGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
130 CTGCTACCGCAACCCTCAGTCCGATCTAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTG
* * ** * * * *
21183870 GGGATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGTCGCTCAACCGACTGGAG
195 GGGATGAACTCCGTATGCCTAAGTCAACCCAAGAAACAAGCGTGTGG-CGCTCAGCCGACCGAAG
* ** * * * *
21183935 AGGCAGAATGC-AAAAGTCAGGGATCGGCCCGAT-CCCCCTGCATGCTACCGATCCTGCTGTTGG
259 AGGCAGAATACTGTAAGTCA-GGATCGACCCGATCCCCCCTGCGTGCTACCGATCTTGCTGCTGG
* ** * * * *
21183998 TCCTACTGTTGTAACCCTCAGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
323 TCCTGCTGCCGAAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
* * * * * *
21184063 ACGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGTTGG
388 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGG
* * *** * * *
21184128 AGAGATAGAATGCGCAAGCCAGGGACCTTTTCGATCCCCCCTGCGTGCTGTCGATCCTACTATCG
453 AGAGGTAGAATGCGCAAGCGA-GGACCGACTCGATCCCCCCTGCGTGCTGTCGATCTTGCTACCG
* * * *
21184193 CGACCCTCGATCCGATCTGATCTTAGACTGGGAATGAAC-CCGTATGCCTAAGTCAACCCACGAA
517 CAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * *
21184257 ACGAGTGTGT-GGGCGCTGAGCCGGCC--AGGGGC--GCT-G--AGCCGGGGATCGATCC-AGTC
582 ACGAGCGT-TCGGGCGCTGAGCCGACCGGAGAGGCATGATCGCAAGCC-GGGATCGACCCGA-TC
* * * * * *
21184313 CCCCTCTGCATGCTG-TCAGTCCCACTGCCACAACCTTCAATCCAACTGGG
644 CCCCTCTGCGTGCTGCT-AGTCCCGCTGCCACAACCATCAGTCCAGCTTGG
* * * *
21184363 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * * * ** *
21184428 TCGGCTGGAGAGGCAGAATGCGCAAGTCAGAGATCGGCCT-GATCCCCATTGCGTGCTATCGATC
66 CCAGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCTAG-TCCCCCCTGCGTGCTGTCGATC
** *
21184492 CTGCTGTCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTG
130 CTGCTACCGCAACCCTCAGTCCGATCTAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTG
* *
21184557 GGGATGAATTTCGTATGCCTAAGTCAACCCA
195 GGGATGAACTCCGTATGCCTAAGTCAACCCA
21184588 CGAATGAGCG
Statistics
Matches: 1343, Mismatches: 244, Indels: 68
0.81 0.15 0.04
Matches are distributed among these distances:
686 3 0.00
687 246 0.18
688 1 0.00
689 1 0.00
691 2 0.00
693 5 0.00
695 52 0.04
696 227 0.17
697 218 0.16
698 356 0.27
699 9 0.01
701 1 0.00
703 1 0.00
705 1 0.00
707 1 0.00
708 4 0.00
709 213 0.16
710 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (693 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
CCAGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCTAGTCCCCCCTGCGTGCTGTCGATCC
TGCTACCGCAACCCTCAGTCCGATCTAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGG
GGATGAACTCCGTATGCCTAAGTCAACCCAAGAAACAAGCGTGTGGCGCTCAGCCGACCGAAGAG
GCAGAATACTGTAAGTCAGGATCGACCCGATCCCCCCTGCGTGCTACCGATCTTGCTGCTGGTCC
TGCTGCCGAAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATG
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGA
GGTAGAATGCGCAAGCGAGGACCGACTCGATCCCCCCTGCGTGCTGTCGATCTTGCTACCGCAAC
CCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
GCGTTCGGGCGCTGAGCCGACCGGAGAGGCATGATCGCAAGCCGGGATCGACCCGATCCCCCTCT
GCGTGCTGCTAGTCCCGCTGCCACAACCATCAGTCCAGCTTGG
Found at i:21183787 original size:159 final size:158
Alignment explanation
Indices: 21183358--21183861 Score: 441
Period size: 159 Copynumber: 3.2 Consensus size: 158
21183348 AACTTTGTAT
* * * *
21183358 GCTTACACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCGCTCAG
* * * * * *
21183423 CCGATCGGAGAGGCAGAATGCGCAAGTCGAGGACCGACCCGATCCCCCCCTGCATGCTGTCTATC
66 CCGATCGGAGAGGCAGAATACGCAAGTCGAGGATCG-GCCGATCCCACTCTGCGTGCTGTCTATC
** ** * *
21183488 TTGCTACCGTAACCCTCGGTCTGATCCGA
130 CCGCTACCACAACCATCGGTCAGATCCGA
* * * *
21183517 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGT-TCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGT-GGGCGCTC
* *
21183580 AGCCGATCGGAGAGGCATG-ATACGCAAG-CCAGGGATTGGCCCGATCCCACTCTGCGTGCTG-C
64 AGCCGATCGGAGAGGCA-GAATACGCAAGTCGA-GGATCGG-CCGATCCCACTCTGCGTGCTGTC
* * * * *
21183642 TGGTCCCGCTGCCACAACCATCGGTCCAGCT-TGG
126 T-ATCCCGCTACCACAACCATCGGT-CAGATCCGA
* * * *
21183676 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCGCTCAG
** * * * *
21183741 CCGGCCGGAGAGGTAGAATACGCAAGTCGAGGATCGGTCGAGTCCCACT-TACGTGCTGTCGATC
66 CCGATCGGAGAGGCAGAATACGCAAGTCGAGGATCGGCCGA-TCCCACTCTGCGTGCTGTCTATC
* * * * * **
21183805 CTGCTATCGCAACCTTCGGT-ACGGTCTAA
130 CCGCTACCACAACCATCGGTCA-GATCCGA
*
21183834 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
21183862 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 54, Indels: 33
0.76 0.15 0.09
Matches are distributed among these distances:
156 1 0.00
157 3 0.01
158 60 0.22
159 203 0.74
160 8 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCGCTCAG
CCGATCGGAGAGGCAGAATACGCAAGTCGAGGATCGGCCGATCCCACTCTGCGTGCTGTCTATCC
CGCTACCACAACCATCGGTCAGATCCGA
Found at i:21183871 original size:26 final size:26
Alignment explanation
Indices: 21183835--21183887 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21183825 ACGGTCTAAT
21183835 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21183861 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21183887 C
1 C
21183888 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21184068 original size:26 final size:26
Alignment explanation
Indices: 21184030--21184082 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21184020 CTGGTTTGAT
**
21184030 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
21184056 CTTAGACACGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
21184082 C
1 C
21184083 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATG
Found at i:21184558 original size:26 final size:26
Alignment explanation
Indices: 21184522--21184574 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21184512 CCGATCCAAT
21184522 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
21184548 CTTAGACTGGGGATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
21184574 C
1 C
21184575 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:21184928 original size:11 final size:11
Alignment explanation
Indices: 21184914--21184945 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
21184904 CTATCCGGTG
21184914 ATGCTCCGACA
1 ATGCTCCGACA
*
21184925 ATGCTCCGGCA
1 ATGCTCCGACA
21184936 ATGCTCCGAC
1 ATGCTCCGAC
21184946 GATGGTGCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.22, C:0.38, G:0.22, T:0.19
Consensus pattern (11 bp):
ATGCTCCGACA
Found at i:21185330 original size:26 final size:26
Alignment explanation
Indices: 21185301--21185353 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21185291 CCGGTCCAAT
*
21185301 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21185327 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21185353 C
1 C
21185354 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21185826 original size:185 final size:183
Alignment explanation
Indices: 21185520--21185907 Score: 467
Period size: 185 Copynumber: 2.1 Consensus size: 183
21185510 TTAGATTTGA
* * * *
21185520 AATGAACTATGTATGCTTAGACATGGAATGAACTCCGTATGCCTTAGCCAACCCATAAAACGAGC
1 AATGAACTCTGTATGCTTAGAAATGAAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAG-
* * * *
21185585 ATGTGGGCACTCAGCCAGCCGGAGAGGCAGAATGCGTAAGCTGAGGATCGACCCGGTCCCCCCCT
65 ATGTGGGCACTCAACCAGCCGGAGAGGCAGAATGCATAAGCCGAGGATCAACCCGGT-CCCCCCT
* * *
21185650 GCGTGCTATCGATCCTACTATCGCAACCCTCGA-TCCAATCCTATCTTAGACTGGG
129 ACGTGCTATCGATCCTACTATCGCAACCCT-GAGTCCAAGCCAATCTTAGACTGGG
* **
21185705 AATGAACTCCGTATGCTTAGAAATGAAATGAACTCCGTATGCCTAAGCCAACCCATGGAACGAG-
1 AATGAACTCTGTATGCTTAGAAATGAAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGA
** * * * *
21185769 TGTGGGGGCGTACAACC-GACCGGAGAGGTAGAATGCATAAGCCGGGGGTCAACCCGGTCCCTCC
66 TGTGGGCAC-T-CAACCAG-CCGGAGAGGCAGAATGCATAAGCCGAGGATCAACCCGGTCCCCCC
* * * * * *
21185833 TACGTGCTGTCGATCTTGCTATCGCAACCCTTAGTCTAGGCCAATCTTAGACTGGG
128 TACGTGCTATCGATCCTACTATCGCAACCCTGAGTCCAAGCCAATCTTAGACTGGG
21185889 AATGAACTCTGTATGCTTA
1 AATGAACTCTGTATGCTTA
21185908 AGTCAACCCA
Statistics
Matches: 172, Mismatches: 27, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
183 8 0.05
184 70 0.41
185 94 0.55
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (183 bp):
AATGAACTCTGTATGCTTAGAAATGAAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGA
TGTGGGCACTCAACCAGCCGGAGAGGCAGAATGCATAAGCCGAGGATCAACCCGGTCCCCCCTAC
GTGCTATCGATCCTACTATCGCAACCCTGAGTCCAAGCCAATCTTAGACTGGG
Found at i:21187780 original size:26 final size:26
Alignment explanation
Indices: 21187729--21187781 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21187719 GGCTCAAACT
*
21187729 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21187755 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21187781 C
1 C
21187782 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21188068 original size:26 final size:26
Alignment explanation
Indices: 21188039--21188089 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21188029 CCGGTTCGAC
*
21188039 CTTAGACTG-GGAATGAACTTCGTATA
1 CTTAGACTGAGG-ATGAACTCCGTATA
21188065 CTTAGACTGAGGATGAACTCCGTAT
1 CTTAGACTGAGGATGAACTCCGTAT
21188090 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATA
Found at i:21188657 original size:159 final size:159
Alignment explanation
Indices: 21188272--21188683 Score: 404
Period size: 159 Copynumber: 2.6 Consensus size: 159
21188262 AACTCCGTAT
* *
21188272 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAG
* * *
21188337 CCGGCCAGAGAGGCAGAATGCGCAAGCCGAGGACCGACCCGATCCCACCCTGCGTGCTGTCGATC
66 CCGGCCAGAGAGGCAGAATGCACAAGCCGAGGACCGACCCGATCCCACCCTGCATGCTGCCGATC
* * * *
21188402 CTACTACCGCAACCCTCGGTCCGGTCCGA
131 CCACTACCACAACCCTCGGTCAGCTCCGA
* * * * * *
21188431 TCTTAGAC-TGGAAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGGCAC-CG
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTC-
* * * * * * *
21188494 AGCCGGTCAGAGAGGTATAATGCACAAGTCGAGGATCGGCTCGATCCC-CCTCTGCATGCTGCC-
64 AGCCGGCCAGAGAGGCAGAATGCACAAGCCGAGGACCGACCCGATCCCACC-CTGCATGCTGCCG
* * * *
21188557 AGTCCCGCTGCCACAACCCTCGGTCTAGCT-GGG
128 A-TCCCACTACCACAACCCTCGGTC-AGCTCCGA
* * * * *
21188590 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAAA-AGACATACGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAG-CGTGCGGGCGCTCA
* ** **
21188654 GCCGACTGGAGAGGCAGAATGTGCAAGCCG
65 GCCGGCCAGAGAGGCAGAATGCACAAGCCG
21188684 GGGTCCACCC
Statistics
Matches: 200, Mismatches: 45, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
158 9 0.05
159 185 0.93
160 6 0.03
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAG
CCGGCCAGAGAGGCAGAATGCACAAGCCGAGGACCGACCCGATCCCACCCTGCATGCTGCCGATC
CCACTACCACAACCCTCGGTCAGCTCCGA
Found at i:21188770 original size:26 final size:26
Alignment explanation
Indices: 21188741--21188791 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
21188731 GATCCGATCA
*
21188741 TAGACTGAGAATGAACTCCGTATGCT
1 TAGACTGAGAATGAACTCCATATGCT
* *
21188767 TAGACTGGGGATGAACTCCATATGC
1 TAGACTGAGAATGAACTCCATATGC
21188792 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGAGAATGAACTCCATATGCT
Found at i:21189417 original size:26 final size:26
Alignment explanation
Indices: 21189380--21189430 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21189370 GCTCAAACTC
21189380 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
21189406 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
21189431 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:21190637 original size:26 final size:26
Alignment explanation
Indices: 21190601--21190653 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21190591 CCAGTCCGAT
* *
21190601 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
21190627 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
21190653 C
1 C
21190654 CTACGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:21191021 original size:26 final size:26
Alignment explanation
Indices: 21190983--21191035 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
21190973 CTGATCCGAT
21190983 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
21191009 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
21191035 C
1 C
21191036 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:21192604 original size:159 final size:157
Alignment explanation
Indices: 21192220--21192666 Score: 486
Period size: 159 Copynumber: 2.8 Consensus size: 157
21192210 AACTCCATAC
* * *
21192220 GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
21192285 TC-GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGGCCGGTCCCCCCTGTGTGTTGTCGATC
66 CCAG-CCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GGCCCGTCCCCCCTGTGTGCTGCCGATC
** * * *
21192349 TTGCCGTCACAACCCTCAGTCTGGTCTGA
129 CCGCCGCCACAACACTCAGTCCGGTCTGA
* * * * * * *
21192378 TCTTGGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAACGTGCGGGCGCTGAG
1 GCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** ** * *
21192443 CCAGCCAAAGAGGCATCATGCGCAAGCCAGGGATCGGCCCGCTCCCCCTCAGTGTGCTGCC-AGT
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCG-TCCCCC-CTGTGTGCTGCCGA-T
* *
21192507 CCCGCTGCCACAACACTCAGTCCGG-CTGGG
128 CCCGCCGCCACAACACTCAGTCCGGTCT-GA
* * * * * * *
21192537 GCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCCTACGGGTGCTCAG
1 GCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
21192602 CCAGTCGGAGAAGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGTGTGCTGCCGATCC
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCC-GTCCCCCCTGTGTGCTGCCGATCC
21192667 TGCTGTCGCA
Statistics
Matches: 234, Mismatches: 48, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
157 5 0.02
158 105 0.45
159 123 0.53
160 1 0.00
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.17
Consensus pattern (157 bp):
GCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGTCCCCCCTGTGTGCTGCCGATCCC
GCCGCCACAACACTCAGTCCGGTCTGA
Found at i:21193247 original size:159 final size:158
Alignment explanation
Indices: 21192888--21193256 Score: 402
Period size: 158 Copynumber: 2.3 Consensus size: 158
21192878 TCGATCCAGC
* * *
21192888 TGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACAC
1 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGACAC
*
21192953 TCAACCAGTCAGAGAGGCTGAATGCACAAGCCAAGGATCGACCCGATCCCCCCTGCGTGCTGTCA
66 TCAACCAGTCAGAGAGGCTGAATGCACAAGCCAAGGATCGACCCGATCCCCCCTACGTGCTGTCA
* * * *
21193018 ATCTTGCTGCCGCAACCCTTGGTCTGAT
131 ATCTCGCTACCACAACCCTCGGTCTGAT
***** * * * *
21193046 CCATTCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGCG
1 TGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGACA
* * * * ** * *
21193110 CTGAGCC-GATCGGGGAGGCAT-AATGTGCAAGCCAGGGATCGACCCGGTCCCCCTCTACGTGCT
65 CTCAACCAG-TCAGAGAGGC-TGAATGCACAAGCCAAGGATCGACCCGATCCCCC-CTACGTGCT
** * *
21193173 GTCGGTCTCGCTACCACAACCCTCGGTTTGGT
127 GTCAATCTCGCTACCACAACCCTCGGTCTGAT
* *
21193205 TGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
1 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
21193257 GGTGTGCGGG
Statistics
Matches: 169, Mismatches: 37, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 2 0.01
158 91 0.54
159 75 0.44
160 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGACAC
TCAACCAGTCAGAGAGGCTGAATGCACAAGCCAAGGATCGACCCGATCCCCCCTACGTGCTGTCA
ATCTCGCTACCACAACCCTCGGTCTGAT
Found at i:21193267 original size:159 final size:159
Alignment explanation
Indices: 21192888--21193324 Score: 454
Period size: 159 Copynumber: 2.8 Consensus size: 159
21192878 TCGATCCAGC
* * *
21192888 TGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACAC
1 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAC
* * * * *
21192953 TCAACC-AGTCAGAGAGGC-TGAATGCACAAGCCAAGGATCGACCCGATCCCCC-CTGCGTGCTG
66 TCAACCGA-TCGGAGAGGCAT-AATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTACGTGCTG
* * * *
21193015 TCAATCTTGCTGCCGCAACCCTTGGTCTGAT
129 TCAATCTCGCTACCACAACCCTCGGTCTGAT
***** * * * *
21193046 CCATTCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGCG
1 TGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCA
* * * *
21193110 CTGAGCCGATCGGGGAGGCATAATGTGCAAGCCAGGGATCGACCCGGTCCCCCTCTACGTGCTGT
65 CTCAACCGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTACGTGCTGT
** * *
21193175 CGGTCTCGCTACCACAACCCTCGGTTTGGT
130 CAATCTCGCTACCACAACCCTCGGTCTGAT
* * * *
21193205 TGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCAC
1 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAC
* * * **
21193270 TCAATCGATCGGAGAGGCAGAATGCGCAAGTC-GGTGATCGATTCGGT-CCCCTCTA
66 TCAACCGATCGGAGAGGCATAATGCGCAAGCCAGG-GATCGACCCGGTCCCCCTCTA
21193325 TGTACTACCG
Statistics
Matches: 222, Mismatches: 51, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
157 1 0.00
158 101 0.45
159 119 0.54
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAC
TCAACCGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTACGTGCTGTC
AATCTCGCTACCACAACCCTCGGTCTGAT
Found at i:21194415 original size:159 final size:159
Alignment explanation
Indices: 21194117--21194424 Score: 347
Period size: 159 Copynumber: 1.9 Consensus size: 159
21194107 ACTCCGCACG
* * * *
21194117 CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATAAACTCCGTAAGCATAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGT
* * * * * * * *
21194182 CGGTCGGAAAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCTCTTCTGTGTGCTGTCGATCC
66 CCGACGGAAAGGAAGAATACGCAAGTCGGGGATCAGCCCGACCCCCCTCTGCGTGCTGTCGATCC
21194247 TGCTACCACAACCCTCGGTTTGATCTAAT
131 TGCTACCACAACCCTCGGTTTGATCTAAT
* * * * *
21194276 CTTAGAC-TAGGAATGAACTCCGTAAGCATAAGTCAACCCACGAAATGAGAGTGCGGGTGCTGA-
1 CTTAGACAT-GGAATAAACTCCGTAAGCATAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAG
* * *
21194339 TCCGACTGAAGAGGAATAATACGCAAG-CTGGGGATCAGCCCGACCCCCCTCTGCGTGCTG-CTA
65 TCCGACGGAA-AGGAAGAATACGCAAGTC-GGGGATCAGCCCGACCCCCCTCTGCGTGCTGTCGA
*
21194402 -CTCTGACTGCCACAACCCTCGGT
128 TC-CTG-CTACCACAACCCTCGGT
21194425 CTGACTGGGG
Statistics
Matches: 123, Mismatches: 21, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
157 1 0.01
158 14 0.11
159 108 0.88
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATAAACTCCGTAAGCATAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGT
CCGACGGAAAGGAAGAATACGCAAGTCGGGGATCAGCCCGACCCCCCTCTGCGTGCTGTCGATCC
TGCTACCACAACCCTCGGTTTGATCTAAT
Found at i:21195085 original size:26 final size:26
Alignment explanation
Indices: 21195047--21195099 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
21195037 TCGAGCCGAT
21195047 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
21195073 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
21195099 C
1 C
21195100 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:21196311 original size:26 final size:26
Alignment explanation
Indices: 21196273--21196325 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21196263 GGCTCAAAAT
21196273 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21196299 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21196325 C
1 C
21196326 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21196806 original size:26 final size:26
Alignment explanation
Indices: 21196777--21196829 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21196767 CCGATCCGAT
21196777 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
21196803 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
21196829 C
1 C
21196830 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:21197208 original size:26 final size:26
Alignment explanation
Indices: 21197164--21197216 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21197154 ATGGAATGAT
* *
21197164 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
21197190 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
21197216 C
1 C
21197217 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:21197936 original size:26 final size:26
Alignment explanation
Indices: 21197898--21197950 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21197888 GGCTCAAAAT
21197898 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21197924 CTTAGAC-GTGGAATGAACTCTGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
21197950 C
1 C
21197951 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21198255 original size:159 final size:156
Alignment explanation
Indices: 21197923--21198367 Score: 509
Period size: 159 Copynumber: 2.8 Consensus size: 156
21197913 AACTCCGTAT
* * * *
21197923 GCTTAGACGTGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAAGGAGCATACGGGTGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * * * * *
21197988 CTGGTCGGAGAGGTAGAATGCGCAAGTCGGGGATGGCCCGAT-CCCCCTACGTGCTGTCGATCCT
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATGGCCCGGTCCCCCCTACGTGCTGTAGATCCC
*
21198052 TCCACCACAACCCTCAGTCTAATCCGA
130 GCCACCACAACCCTCAGTCTAATCCGA
* * * * *
21198079 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGTTGAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * *
21198144 CCGGCCGAAGAGGCATAATGTGCAAGCCAGGGATCGACCCGGTCCCCCTCTACGTGCTGTA-AGT
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGAT-GGCCCGGTCCCCC-CTACGTGCTGTAGA-T
* * * *
21198208 CCCGCTACCACAACCCTCAGTCTGA-CTGGG
127 CCCGCCACCACAACCCTCAGTCTAATC-CGA
* * * * *
21198238 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTGGGGGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
*
21198303 CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCCTACGTGCTGTCGATCC
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGA-TGGCCCGGTCCCCCCTACGTGCTGTAGATCC
21198368 TGTTGTTGGT
Statistics
Matches: 240, Mismatches: 40, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
155 1 0.00
156 80 0.33
157 6 0.03
158 20 0.08
159 131 0.55
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (156 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
CGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATGGCCCGGTCCCCCCTACGTGCTGTAGATCCCG
CCACCACAACCCTCAGTCTAATCCGA
Found at i:21198839 original size:159 final size:158
Alignment explanation
Indices: 21198434--21198864 Score: 419
Period size: 158 Copynumber: 2.7 Consensus size: 158
21198424 AACTCCGTAT
* * * * *
21198434 GCTTAAACATGGAATGAACACCGTATGCCTAAGCCAACCTACGGAACGAGCGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAA
*
21198499 CCGGTCGAAGAGGCAAAATGCACAAGCTCGGGATCGACCCAGTCCCCCCTACGTGCTATCAATCC
66 CCGGTCGAAGAGGCAAAATGCACAAGCTAGGGATCGACCCAGTCCCCCCTACGTGCTATCAATCC
* ** *
21198564 TACTATCGTAACCCTCAGTCTGGTCTGA
131 TACTACCACAACCCTCAGTCTGGACTGA
* * * *
21198592 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAAACCACGAAACGAGCGAGTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCA
* ** * * * * ** * *
21198656 GCCGACCGGAGAGGCATAACGCACAAGCTAGGGATCGGCCC-GATACCCCTTTGCGTGCTATCAG
65 ACCGGTCGAAGAGGCAAAATGCACAAGCTAGGGATCGACCCAG-T-CCCCCCTACGTGCTATCAA
* * *
21198720 T-CTCACTGCCACAACCCTCGGTCT-GACTGGG
128 TCCT-ACTACCACAACCCTCAGTCTGGACT-GA
* * *
21198751 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGACGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAG-CGTGTGGGCGCTCA
* * * *
21198815 ATCGGTCGTAGAGGCAGAATGCAC-AG-TCGGGAATCGA-CCAGATCCCCCCT
65 ACCGGTCGAAGAGGCAAAATGCACAAGCTAGGG-ATCGACCCAG-TCCCCCCT
21198865 GCATGCTGTC
Statistics
Matches: 218, Mismatches: 46, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
157 13 0.06
158 103 0.47
159 101 0.46
160 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.25, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAA
CCGGTCGAAGAGGCAAAATGCACAAGCTAGGGATCGACCCAGTCCCCCCTACGTGCTATCAATCC
TACTACCACAACCCTCAGTCTGGACTGA
Found at i:21199396 original size:26 final size:26
Alignment explanation
Indices: 21199356--21199407 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21199346 CAGTTCGATA
21199356 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
* *
21199382 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
21199408 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:21200274 original size:26 final size:26
Alignment explanation
Indices: 21200245--21200296 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21200235 CCGATTCGAT
*
21200245 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21200271 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21200297 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21200633 original size:26 final size:26
Alignment explanation
Indices: 21200583--21200635 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21200573 TGCTGTCGAT
* **
21200583 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
21200609 CTTAGACTGGGGACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
21200635 C
1 C
21200636 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:21201344 original size:26 final size:26
Alignment explanation
Indices: 21201306--21201358 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21201296 GGCTCAAAAT
*
21201306 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21201332 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21201358 C
1 C
21201359 CTATGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.