Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 202 of 402
Found at i:21201684 original size:26 final size:26
Alignment explanation
Indices: 21201648--21201700 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21201638 TCCATCCGAT
*
21201648 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21201674 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21201700 C
1 C
21201701 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21202386 original size:26 final size:26
Alignment explanation
Indices: 21202344--21202396 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21202334 GGCTCAAAAT
21202344 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21202370 CTTAGACAT-GGACTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21202396 C
1 C
21202397 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21202746 original size:159 final size:158
Alignment explanation
Indices: 21202369--21202870 Score: 505
Period size: 159 Copynumber: 3.2 Consensus size: 158
21202359 AACTCCGTAT
* * * *
21202369 GCTTAGACATGGACTGAACTCCGTATGCCTAAGCCAACCCATAAAACCAGCGTACGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
* * * * * * *
21202434 CTGGCCGATGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGGT-CCCCCTACATGTTG-TCGATC
66 CTGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCT-GATC
*
21202497 CTGCTGTCGCAACCCTCGGTTTGGTCTGA
130 CTGCTGTCGCAACCCTCGGTCTGGTCTGA
* * * * * * * *
21202526 TCTTAGAC-TAGGAATGAACTCTGAATGCATAAGTCAACCCATGAAATGAGCGTACGAGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCA
* * *
21202590 GCTGGCCGAAGAGGCATAATGCACAAGCCGGGGATCGACTCGGTCCCCCTCTGCGTGCTGCCTG-
65 GCTGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTG-CTGA
* * *
21202654 TCCTGCTGCCACAACCCTCGGTCTGG-CTGGG
128 TCCTGCTGTCGCAACCCTCGGTCTGGTCT-GA
* * * * * **
21202685 GCTTAGACATGGAATGAACTCCCTATTCCTAAGCCAACCCATGAAAGGGGGGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
* * * * * * *
21202750 CCGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCCTGTGTGCTGTTGATCT
66 CTGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCTGATCC
*
21202815 TGCTGTCGCAACCCTCGGTCTGAT-TCGA
131 TGCTGTCGCAACCCTCGGTCTGGTCT-GA
* *
21202843 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
21202871 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 58, Indels: 19
0.78 0.16 0.05
Matches are distributed among these distances:
156 1 0.00
157 91 0.33
158 61 0.22
159 121 0.44
160 2 0.01
161 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
CTGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCTGATCC
TGCTGTCGCAACCCTCGGTCTGGTCTGA
Found at i:21202873 original size:26 final size:26
Alignment explanation
Indices: 21202844--21202896 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21202834 CTGATTCGAT
*
21202844 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21202870 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21202896 C
1 C
21202897 CTAAGCCTCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21203168 original size:277 final size:279
Alignment explanation
Indices: 21202660--21203178 Score: 690
Period size: 277 Copynumber: 1.9 Consensus size: 279
21202650 CCTGTCCTGC
* ** * *
21202660 TGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATTCCTAAGCCAACCC
1 TGCCACAACCCTCGATCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * * * *
21202725 ATGAAAGGGGGGTGTGGGCACTCAGCCGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCGACCC
66 ACGAAACGGGCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCC
*** * ** * * * *
21202790 GATCCCCCCTGTGTGCTGTTGATCTTGCTGTCGCAACCCTCGGTCTGATTCGATCTTAGACTGGG
131 GATCCCCCCTGTGTGCTGCCAATCCTGCTACCACAACCCTCAGACCGATTCGATCTTAGACTGGG
* *
21202855 AATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCTCGAAATGGATCCGAT
196 AATGAACTCTGTATGCTCAGACTGGGGATAAACTCCGTATGCCTAAGCCTCGAAATGGATCCGAT
21202920 TCAGAAAAAAGGGTCCCAT
261 TCAGAAAAAAGGGTCCCAT
*
21202939 TGCCATAACCCTCGATCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGATCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
** * *
21203004 ACGAAACGGGCGTGCGGGGGCTCAGCC-AGCCGAAG-GGCAGAATGCGCAAGCTGGGGATCGGCC
66 ACGAAACGGGCGTGCGGGCACTCAGCCGA-CCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACC
* *
21203067 CG-TCCCCCCTG-GATGCTGCCAATCCTGCTACCATAACCCTCAGACCG-GTCTGATCTTAGACT
130 CGATCCCCCCTGTG-TGCTGCCAATCCTGCTACCACAACCCTCAGACCGATTC-GATCTTAGACT
*
21203129 GGGAATGAACT-TCGTATGCTCAGACTGGGGTTAAACTCCGTATGCCTAAG
193 GGGAATGAACTCT-GTATGCTCAGACTGGGGATAAACTCCGTATGCCTAAG
21203179 GCAACCCACA
Statistics
Matches: 206, Mismatches: 30, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
276 4 0.02
277 88 0.43
278 28 0.14
279 86 0.42
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (279 bp):
TGCCACAACCCTCGATCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
ACGAAACGGGCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCC
GATCCCCCCTGTGTGCTGCCAATCCTGCTACCACAACCCTCAGACCGATTCGATCTTAGACTGGG
AATGAACTCTGTATGCTCAGACTGGGGATAAACTCCGTATGCCTAAGCCTCGAAATGGATCCGAT
TCAGAAAAAAGGGTCCCAT
Found at i:21203309 original size:184 final size:182
Alignment explanation
Indices: 21202980--21203385 Score: 476
Period size: 184 Copynumber: 2.2 Consensus size: 182
21202970 ACATGGAATG
* * ** *
21202980 AACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGGGCTCAGCCAGCCGAAGGGCAGA
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCAGCCGAAGGGCAGA
* * * * *
21203045 ATGCGCAAGCTGGGGATCGGCCCGTCCCCCCTGGATGCTGCCAATCCTGCTACCATAACCCTCAG
66 ATGCGCAAGCCGGGGATCGACCCGTCCCCACTGGATGCTACCAATCCTGCTACCACAACCCTCAG
* ** * * *
21203110 ACCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTCAGACTGGGGTTA
131 ACCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTCAGACTGGGGATA
* * * * *
21203162 AACTCCGTATGCCTAAGGCAACCCACAAAACGAGCGTGCGGGCACTCAACCGATCGGACA-TGCA
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACC-AGCCGA-AGGGCA
* *
21203226 GAATGCGCAAGCCGGGGATCGACCTGGTCCCCACTGTG-TGCTACCGATCCTGCTACCACAACCC
64 GAATGCGCAAGCCGGGGATCGACC-CGTCCCCACTG-GATGCTACCAATCCTGCTACCACAACCC
* *
21203290 TCA-ATCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATG
127 TCAGA-CCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTCAGACTGGGGATA
* * ** *
21203346 AATTTCGTATGCCTAAGTTAACCCACGAAACGAGCATGCG
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
21203386 AACGCTCAGC
Statistics
Matches: 188, Mismatches: 31, Indels: 8
0.83 0.14 0.04
Matches are distributed among these distances:
182 44 0.23
183 30 0.16
184 113 0.60
185 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (182 bp):
AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCAGCCGAAGGGCAGA
ATGCGCAAGCCGGGGATCGACCCGTCCCCACTGGATGCTACCAATCCTGCTACCACAACCCTCAG
ACCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTCAGACTGGGGATA
Found at i:21203418 original size:184 final size:183
Alignment explanation
Indices: 21203039--21203478 Score: 481
Period size: 184 Copynumber: 2.4 Consensus size: 183
21203029 CCAGCCGAAG
* * * * *
21203039 GGCAGAATGCGCAAGCTGGGGATCGGCCCGTCCCCCCTG-GATGCTGCCAATCCTGCTACCATAA
1 GGCAGAATGCGCAAGCCGGGGATCGACCGGTCCCCCCTGTG-TGCTGCCGATCCTGCTACCACAA
* ** * * *
21203103 CCCTCAGACCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTCAGACTGGGGTTAAACTCC
65 CCCTCAGACCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTCAGACTGGGGATAAACTCC
* ** *
21203168 GTATGCCTAAGGCAACCCACAAAACGAGCGTGCGGGCACTCAACCGATCGGACA
130 GTATGCCTAAGGCAACCCACAAAACGAGCATGCGAACACTCAACCGACCGGACA
* * *
21203222 TGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCACTGTGTGCTACCGATCCTGCTACCACAA
1 GGCAGAATGCGCAAGCCGGGGATCGACC-GGTCCCCCCTGTGTGCTGCCGATCCTGCTACCACAA
* * * *
21203287 CCCTCA-ATCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAATTT
65 CCCTCAGA-CCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTCAGACTGGGGATAAACTC
** * * * *
21203351 CGTATGCCTAAGTTAACCCACGAAACGAGCATGCGAACGCTCAGCCGACCAGG-GA
129 CGTATGCCTAAGGCAACCCACAAAACGAGCATGCGAACACTCAACCGACC-GGACA
* * * * * * * *
21203406 GGCAGGATGCGCAATCCAGGGACTAGCCCGGTCCCCCCTATGTGCTGTCGATCCTGCTACCCCAA
1 GGCAGAATGCGCAAGCCGGGGA-TCGACCGGTCCCCCCTGTGTGCTGCCGATCCTGCTACCACAA
21203471 CCCCTCAG
65 -CCCTCAG
21203479 TCTAATTTGA
Statistics
Matches: 211, Mismatches: 39, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
183 26 0.12
184 172 0.82
185 13 0.06
ACGTcount: A:0.24, C:0.32, G:0.25, T:0.19
Consensus pattern (183 bp):
GGCAGAATGCGCAAGCCGGGGATCGACCGGTCCCCCCTGTGTGCTGCCGATCCTGCTACCACAAC
CCTCAGACCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTCAGACTGGGGATAAACTCCG
TATGCCTAAGGCAACCCACAAAACGAGCATGCGAACACTCAACCGACCGGACA
Found at i:21203826 original size:26 final size:26
Alignment explanation
Indices: 21203777--21203827 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
21203767 CGATCTGATC
**
21203777 TTAGACTGGGAATGAACTTTGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
* *
21203803 TTAGACTGGGGATGAGCTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
21203828 CCTAAGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.12, G:0.31, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:21204161 original size:26 final size:26
Alignment explanation
Indices: 21204132--21204184 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21204122 CCGATTCGAT
21204132 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21204158 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21204184 C
1 C
21204185 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21204234 original size:356 final size:356
Alignment explanation
Indices: 21203586--21204274 Score: 927
Period size: 356 Copynumber: 1.9 Consensus size: 356
21203576 GCGCTGTCGG
* * *
21203586 TCCTGCTGCGACAACCCTCGGTCTAGCTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* ** * *
21203651 CAACCCACGAAACGGGCGTGCGGGCACTCAGCTGGTAGGAAAGGTAGAATGCGTAAGTCGAGGAT
66 CAACACACGAAACGAACGTACGGGCACTCAGCTGGTAGGAAAGGTAGAATGCATAAGTCGAGGAT
* ** *
21203716 CAGCCCGATCCCCCCTGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAG
131 CAGCCCGATCCCCCCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCCGATCTGATCTTAG
** * * **
21203781 ACTGGGAATGAACTTTGTATGTTTAGACTGGGGATGAGCTCCGTATGCCTAAGTCAACCCATGAA
196 ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAA
* * * * * * *
21203846 ATGAGCGTGTGGGTGCTCAGCGGATCGGAGAGGCCGATCAGAGAGGCATAATGCGTAAGCCAGGG
261 ATGAGCATGCGAGAGCTCAGCGGATCGGAGAGGCCGATCAGAGAGACAGAATGCGTAAGCCAAGG
21203911 ATCAGCCCAGCCCCGCTCTGCGTGCTGCCAA
326 ATCAGCCCAGCCCCGCTCTGCGTGCTGCCAA
* * ** *
21203942 TCCTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAATC
1 TCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* *
21204007 CAACACACGAAACGAACGTACGGGCGCTCAGCTGGCT-GGAGAGGTAGAATGCATAAGTC-AGGG
66 CAACACACGAAACGAACGTACGGGCACTCAGCTGG-TAGGAAAGGTAGAATGCATAAGTCGA-GG
* * * *
21204070 ATCAGCCTGGTCCCCCTTGCGTGCTACCGATCCTGCTGCTGCAACCCTCAGTCCGAT-TCGATCT
129 ATCAGCCCGATCCCCCCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCCGATCT-GATCT
21204134 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC
193 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * *
21204199 AAAATGAGCATGCGAGAGCTTAGCCTGCT-GGAGAGGCCGATCGGAGAGATAGAATGTGTAAGCC
258 AAAATGAGCATGCGAGAGCTCAG-CGGATCGGAGAGGCCGATCAGAGAGACAGAATGCGTAAGCC
*
21204263 AAGGATCGGCCC
322 AAGGATCAGCCC
21204275 GATCCCCTCC
Statistics
Matches: 286, Mismatches: 43, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
355 2 0.01
356 280 0.98
357 4 0.01
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.21
Consensus pattern (356 bp):
TCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
CAACACACGAAACGAACGTACGGGCACTCAGCTGGTAGGAAAGGTAGAATGCATAAGTCGAGGAT
CAGCCCGATCCCCCCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCCGATCTGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAA
ATGAGCATGCGAGAGCTCAGCGGATCGGAGAGGCCGATCAGAGAGACAGAATGCGTAAGCCAAGG
ATCAGCCCAGCCCCGCTCTGCGTGCTGCCAA
Found at i:21204370 original size:26 final size:26
Alignment explanation
Indices: 21204341--21204392 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21204331 CCAACCTGAT
21204341 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
21204367 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
21204393 TCGAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:21204824 original size:158 final size:155
Alignment explanation
Indices: 21204366--21204866 Score: 404
Period size: 158 Copynumber: 3.2 Consensus size: 155
21204356 AACTCCATAT
* * *
21204366 GCTTAGACATGGAATGAACTCCGTATGTCGAAGCCAACCCACGAAACGAGTGTACGGGAGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTC-A
* * * * * * * * * *
21204431 CCGGCTGAAGAGGTAAAATGCGCAAGTCGAGGA-CCAGCCTGGTCCCCCCTGCTTGCTGTCGATC
65 GC-GCCGGAGAGGCAAAATGCGTAAGCCGGGGATCGAGCC-GGTCCCCTCTGCATGCTGTCGATC
* * *
21204495 ATACT-ACGTAATCCTTGATCCAGTCTGA
128 CTACTGACG-AACCCTCGATCCAGTCTGA
* * * * ** * *
21204523 TCTTAGAC-TAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTTCGATCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTCA
* * *
21204587 GCAGGCCAGAGAGGCATAATGCGTAAGCTGGGGATCG-GCTCGGTCCCCTCTGCATGCTGTCGAT
65 GC--GCCGGAGAGGCAAAATGCGTAAGCCGGGGATCGAGC-CGGTCCCCTCTGCATGCTGTCGAT
** * *
21204651 CCCGCTGCCAGAACCCTCGATCCAG-CTGGG
127 CCTACTGAC-GAACCCTCGATCCAGTCT-GA
* * *
21204681 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTCAG
* * * * * *
21204746 TCGATCGGAGAGGCAAAATGCATAAGCCGGGGATCGAGCCGATCCCCTCTACGTGCTATCGATCC
66 -CG-CCGGAGAGGCAAAATGCGTAAGCCGGGGATCGAGCCGGTCCCCTCTGCATGCTGTCGATCC
* * * *
21204811 TACTGTCGCAACCCTCGGT-CTGATCCGA
129 TACTGACG-AACCCTCGATCCAG-TCTGA
* *
21204839 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
21204867 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 60, Indels: 29
0.75 0.17 0.08
Matches are distributed among these distances:
156 3 0.01
157 105 0.39
158 155 0.58
159 6 0.02
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTCAG
CGCCGGAGAGGCAAAATGCGTAAGCCGGGGATCGAGCCGGTCCCCTCTGCATGCTGTCGATCCTA
CTGACGAACCCTCGATCCAGTCTGA
Found at i:21204876 original size:26 final size:26
Alignment explanation
Indices: 21204840--21204892 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21204830 CTGATCCGAT
21204840 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
** *
21204866 CTTAGACTGGGGGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21204892 C
1 C
21204893 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21205510 original size:158 final size:157
Alignment explanation
Indices: 21205222--21205722 Score: 513
Period size: 158 Copynumber: 3.2 Consensus size: 157
21205212 TCTCCGTATG
* *
21205222 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGTG-GGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG--TGCGCGGCGCTCAG
* *
21205286 CCTA-CCGGAGAGGCAGAATGCATAAGTCGGGGATCGG-CTCGGTCCCCCCTACGTGCTGTCGAT
64 CC-AGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCT-GGTCCCCTCTACGTGCTGTCGAT
21205349 CCTGCTACAGCAACCCTCGGTCCGGTCTGAT
127 CCTGCTACAGCAACCCTCGGTCCGGTCTGAT
* * * * *
21205380 CTTAGA-ATGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGCGCAGCGCTGAGC
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGCGCGGCGCTCAGC
* * * * *
21205444 CAGCCGGAGAGGCATAATGCGTAAG-CTGGGGATCGGCCTGGTCCCTTTCTACGTGCTATAGGTC
65 CAGCCGGAGAGGCAGAATGCGTAAGTC-GGGGATCGGCCTGGTCCC-CTCTACGTGCTGTCGATC
* * * **
21205508 CTGCTGCCA-CAACCCTCAGTCCAG-CTAGGG
128 CTGCT-ACAGCAACCCTCGGTCCGGTCT-GAT
* *
21205538 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG-G-GCGTACGGGCGCTCA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGCG--C-GGCGCTCA
* * * *
21205601 G-CAGGCCGAAGAGGCAGAATGCGCT-AGTCGGGGATCAGCCTGGTCCCCTCTGCATGCTGTCGA
63 GCCA-GCCGGAGAGGCAGAATGCG-TAAGTCGGGGATCGGCCTGGTCCCCTCTACGTGCTGTCGA
* * * *
21205664 TCCTACTGCCGCAACCCTCGGTTCGGTCTGAT
126 TCCTGCTACAGCAACCCTCGGTCCGGTCTGAT
*
21205696 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
21205723 TTAGACTGGG
Statistics
Matches: 281, Mismatches: 44, Indels: 36
0.78 0.12 0.10
Matches are distributed among these distances:
156 8 0.03
157 51 0.18
158 171 0.61
159 49 0.17
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGCGCGGCGCTCAGCC
AGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCTGGTCCCCTCTACGTGCTGTCGATCCTG
CTACAGCAACCCTCGGTCCGGTCTGAT
Found at i:21206458 original size:26 final size:25
Alignment explanation
Indices: 21206418--21206469 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
21206408 GGCTCAAAAT
*
21206418 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACAGGAATGAACTCCGTATG
*
21206443 CTTAGACAAGGAATGAACTCTGTATG
1 CTTAGAC-AGGAATGAACTCCGTATG
21206469 C
1 C
21206470 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACAGGAATGAACTCCGTATG
Found at i:21206800 original size:26 final size:26
Alignment explanation
Indices: 21206760--21206837 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
21206750 TGGTCTGATG
* *
21206760 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGGATGAACTCCGTATGC
*
21206786 TTAGACTGGGGATGAACTCCGTATGT
1 TTAGACTGGGGATGAACTCCGTATGC
21206812 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGGATGAACTCCGTATGC
21206838 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGGATGAACTCCGTATGC
Found at i:21207544 original size:25 final size:26
Alignment explanation
Indices: 21207495--21207546 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
21207485 CCTGTCCGAT
21207495 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
21207521 CTTAGACTGGG-ATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
21207546 C
1 C
21207547 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:21208259 original size:26 final size:26
Alignment explanation
Indices: 21208217--21208266 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
21208207 GTCTCAAACT
*
21208217 CTTAGACTGGGAGTGAACCCCGTACG
1 CTTAGACTGGGAATGAACCCCGTACG
*
21208243 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACCCCGTA
21208267 TGCCTAAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTACG
Found at i:21208645 original size:26 final size:26
Alignment explanation
Indices: 21208594--21208646 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21208584 TCGGTATGAT
* * *
21208594 CTTAGACTGGGACTGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21208620 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21208646 C
1 C
21208647 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21209408 original size:329 final size:329
Alignment explanation
Indices: 21208619--21209393 Score: 826
Period size: 329 Copynumber: 2.4 Consensus size: 329
21208609 AACTTCGTAT
* * *
21208619 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGA-CTATTCGAGCCCTTA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGC-ATACGAGCGCTTA
* * * ** * **
21208683 GTCAGTCGGAGAGGCAGAATCCGCAAGCTGGGGGCCGACCCAATCCCTCCCTGCGTGCTGTCGAT
65 GTCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGATCCGGTCCC-CCCTGCGTGCTGTCGAT
* * **
21208748 CCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGTC
129 CCTGCTACCACAACCCTCAGTCTGGTCCAATCTTAGACTAAGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
21208813 AACCCACGAAACGAGCGTTCGGGCACTGAGCCGACTGGAGAGGCATAATACGCAAGCCGGGGATC
194 AACCCACAAAACGAGCGTACGAGCACTGAGCCAACCGAAGAGGCATAATACGCAAGCCGAGGATC
* * * * * *
21208878 AGCCTGGTCCCCTTCTGCGTGCTATCGATCCCGCTGCCGGTCCTATTGCCAAAAACCTCGATCAG
259 AGCCAGGTCCCCCTATACGTGCTATCGATCCCGCTGCCGATCCTACTGCCAAAAACCTCGATCAG
21208943 GCTGGG
324 GCTGGG
* * * * *
21208949 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATACGAGCGCTTAG
* * * * * * *
21209014 TTGACCAGAGAGGCAGAATGCGTAAG-TCGGGGATTGGTCCGGTCCCTCCTGCGTGCTGTCGATC
66 TCGGCCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGATCCGGTCCCCCCTGCGTGCTGTCGATC
* * * ** *
21209078 CTGCTATCGCAAGCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
130 CTGCTACCACAACCCTCAGTCTGGTCCAATCTTAGACTAAGAATGAACTCCGTATGCCTAAGTCA
* * * **
21209143 ACCCACAAAATGAGCGTACGAGCGCTGAGCCAACCGAAGATGTGTAATGA-GCAAGCCGAGGATC
195 ACCCACAAAACGAGCGTACGAGCACTGAGCCAACCGAAGAGGCATAAT-ACGCAAGCCGAGGATC
* * * * * * *
21209207 -GATCAGGTCCCCCTATACGTGCT-GCTGATCCTGTTGTCGATCCTGCTGCC-ACAACCATC-AG
259 AG-CCAGGTCCCCCTATACGTGCTATC-GATCCCGCTGCCGATCCTACTGCCAAAAACC-TCGA-
*
21209268 TCTGGCTGGG
320 TCAGGCTGGG
* * * *
21209278 GCTTAGACATGGAATAAACTCCATATGCCTAAGCTAACCCATGAAACGAGCGTGCGAGCGCTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATACGAGCGCTTAG
* * * *
21209343 CCGGCCGGAGAGGAAGAATGAGCAAGCTGGGGATCGATCCGGGCCCCCCTG
66 TCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGATCCGGTCCCCCCTG
21209394 TATGCTACCG
Statistics
Matches: 359, Mismatches: 78, Indels: 17
0.79 0.17 0.04
Matches are distributed among these distances:
328 8 0.02
329 263 0.73
330 87 0.24
331 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (329 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATACGAGCGCTTAG
TCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGATCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTACCACAACCCTCAGTCTGGTCCAATCTTAGACTAAGAATGAACTCCGTATGCCTAAGTCAA
CCCACAAAACGAGCGTACGAGCACTGAGCCAACCGAAGAGGCATAATACGCAAGCCGAGGATCAG
CCAGGTCCCCCTATACGTGCTATCGATCCCGCTGCCGATCCTACTGCCAAAAACCTCGATCAGGC
TGGG
Found at i:21209958 original size:354 final size:354
Alignment explanation
Indices: 21209301--21209961 Score: 774
Period size: 354 Copynumber: 1.9 Consensus size: 354
21209291 ATAAACTCCA
* * *
21209301 TATGCCTAAGCTAACCCATGAAACGAGCGTGCGAGCGCTTAGCCGGCCGGAGAGGAAGAATGAGC
1 TATGCCTAAGCTAACCCATGAAACGAGCGTACGAGCACTCAGCCGGCCGGAGAGGAAGAATGAGC
* * * * ** * * * *
21209366 AAGCTGGGGATCGATCCGGGCCCCCCTGTATGCTACCGATCCTACTGCTGGTCCTGGTGCTGCAA
66 AAGCCGAGGATCGAGCCGAGCCCCCCTACATGCTACCGATCCTACTACTGGTCCTGCTACCGCAA
*
21209431 CCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTTCATATGCTTAGGCATGGAATAAACTCC
131 CCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTTCATATGCTTAGACATGGAATAAACTCC
* * * * * ** *
21209496 GTATGCCTCAGCCAACCTATGAAACGAATGTGTGGGCATTCAGTCGGTCGGAGAGGCAGAATGCG
196 GTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCATTCAGTCGACCGGAGAGGCAGAATGCA
* ** * * *
21209561 TAAGCCAGGGACTGGCCTGACCCCCCCTGCTTTATACCGATCCTGCTATCGTAACCCTCAATCCG
261 CAAGCCAGGGACTGGCCAAACACCCCCTGCGTGATACCGATCCTGCTATCGTAACCCTCAATCCG
21209626 ATCCAATCTTAGACTGGGAATGAACATCG
326 ATCCAATCTTAGACTGGGAATGAACATCG
* * * *
21209655 TATGCCTAAG-TCAACCCATGAAACGAGCGTACGGGCACTCAGCCGGCTGGAGAGGTAGAATGCG
1 TATGCCTAAGCT-AACCCATGAAACGAGCGTACGAGCACTCAGCCGGCCGGAGAGGAAGAATGAG
* * ** * * *
21209719 CAAGCCGAGGATCG-GCCTGATCCCCCCTACGTGCTGTCGATCCTGCTATTGGTCCTGCTACCGG
65 CAAGCCGAGGATCGAGCC-GAGCCCCCCTACATGCTACCGATCCTACTACTGGTCCTGCTACCGC
* * * * *
21209783 TACCCTCGG-TCTGGTCTGATCTTAGACTGGGAATGAAC-TCCTATTCTTAGACATGGAGTGAAC
129 AACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATGAACTTCATATGCTTAGACATGGAATAAAC
* * *
21209846 TTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAGTCGACCGGAGAGGCAGAAT
193 TCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCATTCAGTCGACCGGAGAGGCAGAAT
* * * **
21209911 GCACAAGCCGGGGA-TCGGCCAAATCACCCTCTGCGTGCTGTCGATCCTGCT
258 GCACAAGCCAGGGACT-GGCCAAA-CACCCCCTGCGTGATACCGATCCTGCT
21209962 GGATATGCCA
Statistics
Matches: 250, Mismatches: 52, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
352 1 0.00
353 96 0.38
354 153 0.61
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (354 bp):
TATGCCTAAGCTAACCCATGAAACGAGCGTACGAGCACTCAGCCGGCCGGAGAGGAAGAATGAGC
AAGCCGAGGATCGAGCCGAGCCCCCCTACATGCTACCGATCCTACTACTGGTCCTGCTACCGCAA
CCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTTCATATGCTTAGACATGGAATAAACTCC
GTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCATTCAGTCGACCGGAGAGGCAGAATGCA
CAAGCCAGGGACTGGCCAAACACCCCCTGCGTGATACCGATCCTGCTATCGTAACCCTCAATCCG
ATCCAATCTTAGACTGGGAATGAACATCG
Found at i:21212009 original size:26 final size:26
Alignment explanation
Indices: 21211971--21212023 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21211961 CTGATTCGAT
21211971 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21211997 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21212023 C
1 C
21212024 CTCAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21212290 original size:159 final size:157
Alignment explanation
Indices: 21211997--21212497 Score: 349
Period size: 159 Copynumber: 3.2 Consensus size: 157
21211987 ACTCCATATG
* * * ** ***
21211997 CTTAGACAT-GGAATGAACTCCGTATGCCTCAGCCAACCCACGAAA-CAACCGTGCGGGTGCTCA
1 CTTAGAC-TGGGAATGAACTCCCTATGACTAAGCCAACCCACGAAATGGA-CGTGCGGGCATTCA
** * * * * * * * *
21212060 ATGGACCGAAGAGGCAGAATGCGTAAGCCGGGGA-CCAAC-CTGGTCCCCTACTGCGTGCTGTCA
64 ACCGATCGAAGAGGCAGAATACGCAAGCCGGGGATCC-GCTC-AGTCCCC--CTACGTGCTGCCG
*
21212123 ATCC-TGCTGTCGCAACCCTCGGTCCGGTGTGAT
125 A-CCTTGCTGTCGCAACCCTCGGTCCGATGTGAT
*** * * * *
21212156 CTTAGACTGGGAATGAACTTTGTATGCCTTAGTCAACCCACGAAAT-GA-GTGTTCGGGCATTTA
1 CTTAGACTGGGAATGAACTCCCTATGACTAAGCCAACCCACGAAATGGACGTG--CGGGCATTCA
* * * *
21212219 GCCGATCGAAGAGGCATAATGA-GCAAGCCGGGGAT-CGACTCAGTCCTGCTCTGCGTGCTGCCG
64 ACCGATCGAAGAGGCAGAAT-ACGCAAGCCGGGGATCCG-CTCAGTCC--CCCTACGTGCTGCCG
** * * * * **
21212282 GTCTTGCTGCCACAACCCTCGATCTGACTG-GGG
125 ACCTTGCTGTCGCAACCCTCGGTCCGA-TGTGAT
*
21212315 CTTAGACAT-GGAATGAACTCCCTATGACTAAGCCAACCCATGAAATGGACGTGCGGGCATTCAA
1 CTTAGAC-TGGGAATGAACTCCCTATGACTAAGCCAACCCACGAAATGGACGTGCGGGCATTCAA
* * * * * *
21212379 CCGGTGGGAGAGGCAGAATACGCAAGTCGGGGATCCGCTCGGTCCCCCTACGTGCTGCTGACCTT
65 CCGATCGAAGAGGCAGAATACGCAAGCCGGGGATCCGCTCAGTCCCCCTACGTGCTGCCGACCTT
* * *
21212444 ACTGTCGTAACCCTCGGTCCGATCTGAT
130 GCTGTCGCAACCCTCGGTCCGATGTGAT
*
21212472 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
21212498 CTTAGACTGG
Statistics
Matches: 263, Mismatches: 60, Indels: 40
0.72 0.17 0.11
Matches are distributed among these distances:
156 2 0.01
157 58 0.22
158 3 0.01
159 188 0.71
160 8 0.03
161 4 0.02
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCCTATGACTAAGCCAACCCACGAAATGGACGTGCGGGCATTCAAC
CGATCGAAGAGGCAGAATACGCAAGCCGGGGATCCGCTCAGTCCCCCTACGTGCTGCCGACCTTG
CTGTCGCAACCCTCGGTCCGATGTGAT
Found at i:21212501 original size:26 final size:26
Alignment explanation
Indices: 21212472--21212524 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21212462 CCGATCTGAT
*
21212472 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
21212498 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
21212524 C
1 C
21212525 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:21212881 original size:26 final size:26
Alignment explanation
Indices: 21212852--21212904 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21212842 CCGGTTTGAT
21212852 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
21212878 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21212904 C
1 C
21212905 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21213600 original size:26 final size:26
Alignment explanation
Indices: 21213571--21213623 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21213561 CCGATTCGGT
21213571 CTTAGA-ATGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
21213597 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21213623 C
1 C
21213624 CTAAGCCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21213796 original size:27 final size:26
Alignment explanation
Indices: 21213755--21213808 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 26
21213745 CCGATCCGAT
21213755 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21213781 CTTAGACTTGGGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21213808 C
1 C
21213809 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 7 0.27
27 19 0.73
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21213861 original size:185 final size:180
Alignment explanation
Indices: 21213539--21214160 Score: 566
Period size: 185 Copynumber: 3.3 Consensus size: 180
21213529 TTGCTGCTGG
** * * * * * *
21213539 TCCTGCTATCGCAACCCTTGGTCCGATTCGGTCTTAGAATGGGAATGAACTCCGTATGCTTAGAC
1 TCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* * * *
21213604 ATGGAATGAACTCCGTATGCCTAAGCCTACCCATAAAATGAGCGTGCGGGCACTTAGCCTGCCGG
66 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGG-ACTCAGCC-GTC-G
* * *
21213669 AGAGGCAAAATGTGCAAGTCGAGGATCGGCCCAGTCCCCCCTGCGTGCTATCAA
128 AGAGGCAAAATGCGCAAGTCGGGGATCGGCCC-GTCCCCCCTGCGTGCTATCGA
21213723 TCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
1 TCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* * * *
21213788 TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAACCGATCA
66 AT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGG-ACTCAGCCG-TC-
* * * * * *
21213853 GAGAGGCAAAATGCACAAGCCGGGGATCGACTCGATCCCTCCTGCGTGCTGTCGA
127 GAGAGGCAAAATGCGCAAGTCGGGGATCGGCCCG-TCCCCCCTGCGTGCTATCGA
* ** * * * *
21213908 TCTTGTTGCTGGTCCTGCTACCGCAACCCT-TAGTTAGGTCTGATCTTAGACTGAGAATGATCTC
1 TC------CT-G--CTG---CCGCAACCCTCGA-TCCGATCCGATCTTAGACTGGGAATGAACTC
* * *
21213972 CATATGCTTAGTA-ATGGAATGAACTCCGTATGCCT-AGCCAATCCACGAAACGAGCGTGCGGGA
53 CATATGCTTAG-ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGA
* * * * * * *
21214035 ATCAGCTGGTCGAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCTGGTCTCCCCTGCGTGCTACC
117 CTCAGC-CGTCG-AGAGGCAAAATGCGCAAGTCGGGGATCGGCC-CGTCCCCCCTGCGTGCTATC
21214100 GA
179 GA
* * * * *
21214102 TCCTGCTGTCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATAAACTCCGTATGC
1 TCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGC
21214161 ATAAGCCAAC
Statistics
Matches: 351, Mismatches: 66, Indels: 44
0.76 0.14 0.10
Matches are distributed among these distances:
182 38 0.11
184 60 0.17
185 100 0.28
187 1 0.00
188 2 0.01
191 2 0.01
192 1 0.00
193 1 0.00
194 52 0.15
195 25 0.07
196 21 0.06
197 47 0.13
198 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (180 bp):
TCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
ATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGACTCAGCCGTCGAGA
GGCAAAATGCGCAAGTCGGGGATCGGCCCGTCCCCCCTGCGTGCTATCGA
Found at i:21213980 original size:381 final size:378
Alignment explanation
Indices: 21213473--21214160 Score: 927
Period size: 379 Copynumber: 1.8 Consensus size: 378
21213463 CAGTTGGCCG
*
21213473 GAGAGACAAAATGAGCAAGCCATGGATCAGCTCGATCCCCCTACGTGCTGTCGATCTTGCTGCTG
1 GAGAGACAAAATGAGCAAGCCAGGGATCAGCTCGATCCCCCTACGTGCTGTCGATCTTGCTGCTG
* * * * * *
21213538 GTCCTGCTATCGCAACCCTTGGTCCGATTCGGTCTTAGAATGGGAATGAACTCCGTATGCTTAG-
66 GTCCTGCTACCGCAACCCTTAGTCAGATTCGATCTTAGAATGAGAATGAACTCCATATGCTTAGT
* * * * *
21213602 ACATGGAATGAACTCCGTATGCCTAAGCCTACCCATAAAATGAGCGTGCGGGCACTTAGCCT-GC
131 A-ATGGAATGAACTCCGTATGCCT-AGCCAACCCACAAAACGAGCGTGCGGG-AATCAG-CTGGC
* * * *
21213666 CGGAGAGGCAAAATGTGCAAGTCGAGGATCGGCCCAGTCCCCCCTGCGTGCTATCAATCCTGCTG
192 CGAAGAGGCAAAATGCGCAAGTCGAGGATCAGCCCAGTCCCCCCTGCGTGCTACCAATCCTGCTG
*
21213731 CCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTTGGGAAT
257 CCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATAAACTCCATATGCTTAGACTTGGGAAT
21213796 GAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAACCGATCA
322 GAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAACCGATCA
* * * *
21213853 GAGAGGCAAAATGCA-CAAGCCGGGGATC-GACTCGATCCCTCCTGCGTGCTGTCGATCTTGTTG
1 GAGAGACAAAATG-AGCAAGCCAGGGATCAG-CTCGATCCC-CCTACGTGCTGTCGATCTTGCTG
* * * *
21213916 CTGGTCCTGCTACCGCAACCCTTAGTTAG-GTCTGATCTTAGACTGAGAATGATCTCCATATGCT
63 CTGGTCCTGCTACCGCAACCCTTAGTCAGATTC-GATCTTAGAATGAGAATGAACTCCATATGCT
* * *
21213980 TAGTAATGGAATGAACTCCGTATGCCTAGCCAATCCACGAAACGAGCGTGCGGGAATCAGCTGGT
127 TAGTAATGGAATGAACTCCGTATGCCTAGCCAACCCACAAAACGAGCGTGCGGGAATCAGCTGGC
* * ** * *
21214045 CGAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCTGGTCTCCCCTGCGTGCTACCGATCCTGCTG
192 CGAAGAGGCAAAATGCGCAAGTCGAGGATCAGCCCAGTCCCCCCTGCGTGCTACCAATCCTGCTG
* * * *
21214110 TCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATAAACTCCGTATGC
257 CCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATAAACTCCATATGC
21214161 ATAAGCCAAC
Statistics
Matches: 264, Mismatches: 38, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
378 2 0.01
379 107 0.41
380 56 0.21
381 98 0.37
382 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.23
Consensus pattern (378 bp):
GAGAGACAAAATGAGCAAGCCAGGGATCAGCTCGATCCCCCTACGTGCTGTCGATCTTGCTGCTG
GTCCTGCTACCGCAACCCTTAGTCAGATTCGATCTTAGAATGAGAATGAACTCCATATGCTTAGT
AATGGAATGAACTCCGTATGCCTAGCCAACCCACAAAACGAGCGTGCGGGAATCAGCTGGCCGAA
GAGGCAAAATGCGCAAGTCGAGGATCAGCCCAGTCCCCCCTGCGTGCTACCAATCCTGCTGCCGC
AACCCTCGATCCGATCCGATCTTAGACTGGGAATAAACTCCATATGCTTAGACTTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAACCGATCA
Found at i:21215274 original size:517 final size:501
Alignment explanation
Indices: 21214448--21215368 Score: 1114
Period size: 517 Copynumber: 1.8 Consensus size: 501
21214438 ACCGCCAGCC
* * *
21214448 TCGGTCCGATCTGATCTTAGTCTGGGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCATA
1 TCGGTCCGATCCGATCTTAGTCTAGAAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCATA
** * * * * * *
21214513 TGTGTAAGCGAACCCATGAAACGAGTGTGCGGGTGCTCAGCTGGTTGAAGAGGTAGAATGCGCAA
66 TGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGCAA
* * * * * * * * *
21214578 GCTGGGCATCGACCTGGTCCCCCCTGCGTGCTGTCTATCTTGCTACCGTAACCCTCGATCCAATC
131 GCCGAGCACCGACCCGATCCCCCCTACGTGCTATCGATCCTGCTACCGTAACCCTCGATCCAATC
* *
21214643 TGATCTTAGGTTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGCGCT
196 TGATCTTAGGCTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCAGGCGCT
* * * * ** * *
21214708 TAGCCGGCCGGAGAGGCATAATACGTAAGCCAGGGATCAGCTTGGTCCCCCTTTACGTGCTGTCG
261 GAGCCGACCGGAAAGGCAGAATACACAAGCCAGGGATCAGCTTGGTCCCCCTCTACGTGCTATCG
*
21214773 ATCCCGCTGCCAGTCCTGCTACCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTC
326 AT----C-G-CA---CTG---CCACAACCCTCGGTCTGACTGAGGCTTAGACATGGAATGAACTC
**
21214838 TGTATGCCTAAGCCAACCCACGAAATGAGCGTACTAGCGCTTAACCGGTCAGAGAGGTAGAATGT
379 CCTATGCCTAAGCCAACCCACGAAATGAGCGTACTAGCGCTTAACCGGTCAGAGAGGTAGAATGT
21214903 GAAAGCCGGGGATCGGCTCGGTCCCCCCATACGTGCTATGATCCTGCTGTCGCAACCT
444 GAAAGCCGGGGATCGGCTCGGTCCCCCCATACGTGCTATGATCCTGCTGTCGCAACCT
* * * * *
21214961 TCGGTCCGGTCCGATCTTAGAT-TAGAAATGAACTCCGTATGCTTCGATATGGAATGAACTCCGT
1 TCGGTCCGATCCGATCTTAG-TCTAGAAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCAT
* *
21215025 ATGCCTAAGCCAACCCATGAAACGAGCGTGTGTCTGGGCGCTCAGCCGATCGGAGAGGCAGACTG
65 ATGCCTAAGCCAACCCATGAAACGA--GTGTG-C-GGGCGCTCAGCCGATCGAAGAGGCAGAATG
* * *
21215090 TGCAAGCCGAAG-ACCGGCCCGATCCCCCCTATGTGCTATCGATCCTGCTACCAG-AACCCTCGA
126 CGCAAGCCG-AGCACCGACCCGATCCCCCCTACGTGCTATCGATCCTGCTACC-GTAACCCTCGA
* * * *
21215153 TCCGATCTGATCTT-GGACTGGTAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGATCGTG
189 TCCAATCTGATCTTAGG-CTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAGGAGCGTG
* * * * * * *
21215217 TAGGTGCTGAGCCGATCGGAAAGGCAGAATGCACAAGCCGGGGATC-GGTCTGGTCCCCCTCTGC
253 CAGGCGCTGAGCCGACCGGAAAGGCAGAATACACAAGCCAGGGATCAGCT-TGGTCCCCCTCTAC
*
21215281 GTGCTATCGATCGCACTGCCACAACCCTCGGTCTGACTGAGGCTTAGACATGGACTGAACTCCCT
317 GTGCTATCGATCGCACTGCCACAACCCTCGGTCTGACTGAGGCTTAGACATGGAATGAACTCCCT
*
21215346 ATGCCTAAGCCAACCCATGAAAT
382 ATGCCTAAGCCAACCCACGAAAT
21215369 AGGCGTGCGG
Statistics
Matches: 343, Mismatches: 56, Indels: 26
0.81 0.13 0.06
Matches are distributed among these distances:
505 65 0.19
508 3 0.01
511 2 0.01
512 1 0.00
513 77 0.22
514 1 0.00
515 5 0.01
516 5 0.01
517 182 0.53
518 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (501 bp):
TCGGTCCGATCCGATCTTAGTCTAGAAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCATA
TGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGCAA
GCCGAGCACCGACCCGATCCCCCCTACGTGCTATCGATCCTGCTACCGTAACCCTCGATCCAATC
TGATCTTAGGCTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCAGGCGCT
GAGCCGACCGGAAAGGCAGAATACACAAGCCAGGGATCAGCTTGGTCCCCCTCTACGTGCTATCG
ATCGCACTGCCACAACCCTCGGTCTGACTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
CCAACCCACGAAATGAGCGTACTAGCGCTTAACCGGTCAGAGAGGTAGAATGTGAAAGCCGGGGA
TCGGCTCGGTCCCCCCATACGTGCTATGATCCTGCTGTCGCAACCT
Found at i:21217427 original size:26 final size:26
Alignment explanation
Indices: 21217387--21217437 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21217377 TGATTCGATC
21217387 TTAGACTGGGAATGAACTCCATATGG
1 TTAGACTGGGAATGAACTCCATATGG
* *
21217413 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
21217438 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:21219933 original size:26 final size:26
Alignment explanation
Indices: 21219892--21219944 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21219882 TCGGTTTGAT
*
21219892 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
21219918 CTTAGACTAGGTATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
21219944 C
1 C
21219945 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:21220046 original size:184 final size:182
Alignment explanation
Indices: 21219804--21220275 Score: 552
Period size: 184 Copynumber: 2.6 Consensus size: 182
21219794 CGGGCCAGTC
* * * * *
21219804 GGAGAGGCAGAATGCGCAAGCTGGGAATCGGCCTGATCCCCTCTGCGTGCTATCGATCCTGCTGT
1 GGAGAGGCAAAATGCACAAGCTGGGAATCGGCC-GGTCCCCCCTGCGTGCTGTCGATCCTGCTGT
* * *
21219869 CACAACCCTCGGTTCGGTTTGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TAGGTATG
65 C-CAACCCTCGGTTCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATG
* *
21219933 AACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTCAGTCGGCT
128 AACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTCAGCCGGAT
* *
21219988 GGAGAGGCAAAATGCACAAGCTGGGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGC
1 GGAGAGGCAAAATGCACAAGCTGGGAATCGGC-CGGTCCCCCCTGCGTGCTGTCGATCCTGCTG-
* * *
21220053 TGCCAA-CCTCAGTCCAGTCTGATCTTAGTCTGGGAATGAACTCCATATGCTTAGACATGGAATG
64 T-CCAACCCTCGGTTCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATG
** * * * * * *
21220117 AACTCCGTATGTGTAAGTGAACCCATGAAACGAGTGTGCGGGTGCTTAGCCGGAT
128 AACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTCAGCCGGAT
* * * * * * **
21220172 GAAGAGGCAAAATGCACAAGCTAGCAATCGGCCCGGTGCCCCCTGCATGCTGTCGATCTTGCTAC
1 GGAGAGGCAAAATGCACAAGCTGGGAATCGG-CCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGT
* * *
21220237 CGCAACCCTTGGTTCAGTCCGATCTTAGGCTGGGAATGA
65 C-CAACCCTCGGTTCAGTCTGATCTTAGACTGGGAATGA
21220276 CCTTCGTATG
Statistics
Matches: 243, Mismatches: 38, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
182 1 0.00
183 3 0.01
184 231 0.95
185 7 0.03
186 1 0.00
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.23
Consensus pattern (182 bp):
GGAGAGGCAAAATGCACAAGCTGGGAATCGGCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTC
CAACCCTCGGTTCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAAC
TCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTCAGCCGGAT
Found at i:21220613 original size:26 final size:26
Alignment explanation
Indices: 21220577--21220629 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21220567 CTGGTCCAAT
*
21220577 CTTAGATTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
* *
21220603 CTTAGACTGGGGATGACCTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
21220629 C
1 C
21220630 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:21220712 original size:15 final size:15
Alignment explanation
Indices: 21220674--21220713 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
21220664 CAGCAGGTCG
* *
21220674 GAGAGGCCAGTCGAG
1 GAGAGGCCCGTCGAA
21220689 GAGAGGCCCGTCGAA
1 GAGAGGCCCGTCGAA
21220704 GAGAGGCCCG
1 GAGAGGCCCG
21220714 ATCCCTCTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.45, T:0.05
Consensus pattern (15 bp):
GAGAGGCCCGTCGAA
Found at i:21220967 original size:26 final size:26
Alignment explanation
Indices: 21220938--21220990 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21220928 CCGATTCGAT
21220938 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21220964 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21220990 C
1 C
21220991 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21222252 original size:355 final size:356
Alignment explanation
Indices: 21221354--21222346 Score: 995
Period size: 355 Copynumber: 2.8 Consensus size: 356
21221344 ATGAAGTTCG
* ** * * * *
21221354 TATGCCTAAGTCAACCCACGAAATGAGTGTTCGGGCACTGAGCCGGCCGGAGAGGCATAATGCCC
1 TATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCACTAAGCC-GCCGGAGAGACATAATGCAC
* * *
21221419 AAGCTGAGGATTAGTTC-AGTCCCCCTCTGCGTGTTGTCGATCCCACTGTC-AGTCCTGCTGCCA
65 AAGCTGAGGATCAGTTCGA-TCCCCCTCTGCATGTTATCGATCCCACTGTCGA-TCCTGCTGCCA
* * * * * *
21221482 TAACCTTCGG-TCTGACTGGGGCTTAGACATTGAATGAACTCCGTATGCCTGAGCCAACCCAC-A
128 CAACCCTCGGTTC-AACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGA
* ** * * *
21221545 AACCAAGCGTGCAAGAGCTCAGTCC-GTCGGAGAGGTAGAATGTGCAAGCCGGGGATTGGCCCGA
192 AA-CGAGCGTGCGGGCGCTCAG-CCGGTCGGAGAGGTAGAATGAGCAAGCCGGGGATAGGCCCGA
* * * *
21221609 TCCCCCCTGCGTGCTGTCGATCTTGTTACTGGTCCTGTTGCCGCAACCCTCGATTTGGTCCGATC
255 TCCCCCCTGCGTGCTGTCGATC------CT-G--CTGTT-CCACAACCCTCAATCTAGTCCGATC
*
21221674 TTAGACTGGGAATGAACTCCATATACTTAGACATGGAATGAACTCCG
310 TTAGACTGGGAATGAACTCCATATACTTAGACATGGAATGAACTCCA
* * * *
21221721 TATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCATTAAGCCGACCGGAGAGGA-ATAATGCG
1 TATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCACTAAGCCG-CCGGAGA-GACATAATGCA
* * * * **
21221785 TAAG-TCGAGGATCAGTTCGAT---CC-C--CAT-CTA-C-AT---GCTGCCGATCCCACTGCCA
64 CAAGCT-GAGGATCAGTTCGATCCCCCTCTGCATGTTATCGATCCCACTGTCGATCCTGCTGCCA
** ** * *
21221837 CAACCCTTAGTTCCGCTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
128 CAACCCTCGGTTCAACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAA
* * * * * * * *
21221902 ACGGGCATACGGGCGCTCAGCCGGTCGGAGAGGTAGAATAAGCAAGCCAGGGATCGGTCTGATCC
193 ACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGTAGAATGAGCAAGCCGGGGATAGGCCCGATCC
* *
21221967 CCCCTGCATGCTGTCGATCCTGCTG-T-CACAACCCTCAATCTAGTCTGATCTTAGACTGGGAAT
258 CCCCTGCGTGCTGTCGATCCTGCTGTTCCACAACCCTCAATCTAGTCCGATCTTAGACTGGGAAT
* * * * * *
21222030 GAACTTCGTATGCTTAGAC-TAGGGATGACCTCTA
323 GAACTCCATATACTTAGACAT-GGAATGAACTCCA
* * * *
21222064 TATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCAGTCGGAGAGACATAATGCAC
1 TATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCACTAAGCC-GCCGGAGAGACATAATGCAC
**
21222129 AAGCTGAGGATCAGCCCGATCCCCCTCTGCATGTTATCGATCCCACTGTCGATCCTGCTGCCACA
65 AAGCTGAGGATCAGTTCGATCCCCCTCTGCATGTTATCGATCCCACTGTCGATCCTGCTGCCACA
21222194 ACCCTCGGTTCAACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAC
130 ACCCTCGGTTCAACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAC
** * * *
21222259 GAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATAGGCCCGATCCGC
195 GAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGTAGAATGAGCAAGCCGGGGATAGGCCCGATCC-C
*
21222324 CCTTGCGTGCTGTCGATCCTGCT
259 CCCTGCGTGCTGTCGATCCTGCT
21222347 ACTGTAACCC
Statistics
Matches: 509, Mismatches: 92, Indels: 61
0.77 0.14 0.09
Matches are distributed among these distances:
342 3 0.01
343 124 0.24
344 2 0.00
345 1 0.00
346 5 0.01
347 1 0.00
348 1 0.00
349 5 0.01
350 2 0.00
351 1 0.00
352 2 0.00
354 2 0.00
355 254 0.50
356 28 0.06
358 2 0.00
359 1 0.00
360 1 0.00
361 2 0.00
363 1 0.00
364 2 0.00
366 2 0.00
367 65 0.13
368 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (356 bp):
TATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCACTAAGCCGCCGGAGAGACATAATGCACA
AGCTGAGGATCAGTTCGATCCCCCTCTGCATGTTATCGATCCCACTGTCGATCCTGCTGCCACAA
CCCTCGGTTCAACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACG
AGCGTGCGGGCGCTCAGCCGGTCGGAGAGGTAGAATGAGCAAGCCGGGGATAGGCCCGATCCCCC
CTGCGTGCTGTCGATCCTGCTGTTCCACAACCCTCAATCTAGTCCGATCTTAGACTGGGAATGAA
CTCCATATACTTAGACATGGAATGAACTCCA
Found at i:21222342 original size:171 final size:165
Alignment explanation
Indices: 21222041--21222661 Score: 503
Period size: 159 Copynumber: 3.8 Consensus size: 165
21222031 AACTTCGTAT
* * * * * *
21222041 GCTTAGAC-TAGGGATGACCTCTATATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
21222105 GCC-AGTCGGAGAGACATAATGCACAAGCTGAGGATCA-GCCCGATCCCCCTCTGCATGTTATCG
65 GCCGA-CCGGAGAGGCATAATGCACAAGCCGAGGAT-AGGCCCGATCCCCCTCTGCGTGCTGTCG
21222168 ATCCCACTGTCGATCCTGCTGCCACAACCCTCGGTTC-AACTGGG
128 AT--C-CTGTC--T-CTGCT-CCACAACCCTCGGTTCTAACTGGG
21222212 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** *
21222277 CCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATAGGCCCGATCCGCCCT-TGCGTGCTGTCGAT
66 CCGACCGGAGAGGCATAATGCACAAGCCGAGGATAGGCCCGATCC-CCCTCTGCGTGCTGTCGAT
* * *
21222341 CCTG-CTACTG-T----AACCCTCGGTCCTATCT-GA
130 CCTGTCT-CTGCTCCACAACCCTCGGTTCTAACTGGG
* * ** * * * * * * *
21222371 TCTTAGA-TTGGAAACAAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTGA
1 GCTTAGACATGG-AATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** * * * *
21222435 GCCGGCCAGAGAGGCATAATGCGTAAGTCGAGGATCGGTCCAATCCCCCTCTGCGTGCTG-C--T
65 GCCGACCGGAGAGGCATAATGCACAAGCCGAGGATAGGCCCGATCCCCCTCTGCGTGCTGTCGAT
* *
21222497 --GGTCTC-GCTACCACAACCCTCGG-TCTGACTGGG
130 CCTGTCTCTGCT-CCACAACCCTCGGTTCTAACTGGG
* * * *
21222530 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCGG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * **
21222595 TCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCC-AGTCCCCC-CACCGTGCTGTCGAT
66 CCGACCGGAGAGGCATAATGCACAAGCCGAGGATAGGCCCGA-TCCCCCTCTGCGTGCTGTCGAT
21222658 CCTG
130 CCTG
21222662 CTGCTGCAAC
Statistics
Matches: 358, Mismatches: 70, Indels: 52
0.75 0.15 0.11
Matches are distributed among these distances:
153 1 0.00
154 3 0.01
155 2 0.01
156 1 0.00
158 21 0.06
159 203 0.57
160 6 0.02
161 1 0.00
163 1 0.00
164 1 0.00
165 4 0.01
167 1 0.00
168 3 0.01
169 1 0.00
170 1 0.00
171 102 0.28
172 6 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (165 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCATAATGCACAAGCCGAGGATAGGCCCGATCCCCCTCTGCGTGCTGTCGATC
CTGTCTCTGCTCCACAACCCTCGGTTCTAACTGGG
Found at i:21222490 original size:159 final size:159
Alignment explanation
Indices: 21222213--21222695 Score: 505
Period size: 159 Copynumber: 3.0 Consensus size: 159
21222203 TCAACTGGGG
** * *
21222213 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAACAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
* * *
21222278 CGACCGGAGAGGCAGAATGCGTAAGCCGGGGATAGGCCCGATCCGCCCT-TGCGTGCTGTCGATC
66 CGACCGGAGAGGCAAAATGCGTAAGCCGGGGATCGGCCCAATCC-CCCTCTGCGTGCTGTCGATC
*
21222342 CTGCTACTGTAACCCTCGGTCCTATCTGAT
130 CTGCTACTGCAACCCTCGGTCCTATCTGAT
* * * * * * *
21222372 CTTAGA-TTGGAAACAAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTGAG
1 CTTAGACATGG-AACAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* * * * * * *
21222436 CCGGCCAGAGAGGCATAATGCGTAAGTCGAGGATCGGTCCAATCCCCCTCTGCGTGCTG-CTGGT
65 CCGACCGGAGAGGCAAAATGCGTAAGCCGGGGATCGGCCCAATCCCCCTCTGCGTGCTGTC-GAT
** **
21222500 -CTCGCTACCACAACCCTCGGT-CTGA-CTGGGG
129 CCT-GCTACTGCAACCCTCGGTCCT-ATCT-GAT
** * *
21222531 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCG-G
1 CTTAGACATGGAACAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT-GAG
* ** * **
21222595 TCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCAGTCCCCC-CACCGTGCTGTCGATC
65 CCGACCGGAGAGGCAAAATGCGTAAGCCGGGGATCGGCCCAATCCCCCTCTGCGTGCTGTCGATC
* *
21222659 CTGCTGCTGCAACCCTCGGTCCTGTCTGAT
130 CTGCTACTGCAACCCTCGGTCCTATCTGAT
21222689 CTTAGAC
1 CTTAGAC
21222696 TAGGAATGAA
Statistics
Matches: 258, Mismatches: 54, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
158 47 0.18
159 207 0.80
160 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAACAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
CGACCGGAGAGGCAAAATGCGTAAGCCGGGGATCGGCCCAATCCCCCTCTGCGTGCTGTCGATCC
TGCTACTGCAACCCTCGGTCCTATCTGAT
Found at i:21223272 original size:24 final size:24
Alignment explanation
Indices: 21223243--21223289 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
21223233 CAAGTACCAG
21223243 CACCCATCGCACATCATGTGCGCA
1 CACCCATCGCACATCATGTGCGCA
21223267 CACCCATCGCACATCATGTGCGC
1 CACCCATCGCACATCATGTGCGC
21223290 CCCTCAATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.23, C:0.43, G:0.17, T:0.17
Consensus pattern (24 bp):
CACCCATCGCACATCATGTGCGCA
Found at i:21223453 original size:26 final size:26
Alignment explanation
Indices: 21223415--21223467 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21223405 GGCTCAAAAT
*
21223415 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21223441 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
21223467 C
1 C
21223468 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21223866 original size:159 final size:157
Alignment explanation
Indices: 21223440--21223868 Score: 495
Period size: 159 Copynumber: 2.7 Consensus size: 157
21223430 AACTCTGTAT
* * *
21223440 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGCGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAG
* * *
21223505 CCGGCCAGAGAGGCACAATACGCAAGCCGGGGATCAGCCCGGTCTCGCCTTGCGTGCTGTCGACC
66 CCGGCCGGAGAGGCACAATGCGCAAGCCGGGGATCAGCCCGGTC-C-CCTTGCGTGCTGCCGACC
* *
21223570 CTGCTGCCACAACCCTCAGTCTGGTCTGA
129 CTGCTGCCACAACCCTCAGTCTCGACTGA
* * * * * *
21223599 TCTTAGAC-TGGGAATGAAATCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGTGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCA
* * * * * * *
21223663 GCCGACCGAAGAGGCATAATGTGCAAGCCGAGGATCACCCCGGTCCCCTTTTGCGTGCTGCCGGT
65 GCCGGCCGGAGAGGCACAATGCGCAAGCCGGGGATCAGCCCGGTCCCC--TTGCGTGCTGCC-GA
* *
21223728 CCC-GTTGCCACAACCCTCAGTC-CGACTGGG
127 CCCTGCTGCCACAACCCTCAGTCTCGACT-GA
* * * *
21223758 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAG
* * * *
21223823 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCC
66 CCGGCCGGAGAGGCACAATGCGCAAGCCGGGGATCAGCCCGGTCCC
21223869 TACTACGTGC
Statistics
Matches: 222, Mismatches: 42, Indels: 12
0.80 0.15 0.04
Matches are distributed among these distances:
157 2 0.01
158 5 0.02
159 210 0.95
160 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAG
CCGGCCGGAGAGGCACAATGCGCAAGCCGGGGATCAGCCCGGTCCCCTTGCGTGCTGCCGACCCT
GCTGCCACAACCCTCAGTCTCGACTGA
Found at i:21231661 original size:26 final size:26
Alignment explanation
Indices: 21231632--21231684 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21231622 TCGGTCTGAT
21231632 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21231658 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21231684 C
1 C
21231685 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21232028 original size:26 final size:26
Alignment explanation
Indices: 21231990--21232042 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21231980 CCAGTCTGAT
21231990 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21232016 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21232042 C
1 C
21232043 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21233647 original size:159 final size:156
Alignment explanation
Indices: 21233220--21233649 Score: 421
Period size: 159 Copynumber: 2.7 Consensus size: 156
21233210 NNNNTCCATA
* * *
21233220 AGCTTAGACAAGGAATGAACTCCGTATGCGTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCA
1 AGCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGTGT-C-GGCGCTCA
* * * * * * **
21233285 GCTGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCAGTCCCCCCTTACGTGCTGTCGAT
64 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGT-CCCCCTCACATGCTACCGAT
* * * * * *
21233350 CCTACTGCCGCAACCGTCGGTTCGGTTTG
128 CCCACTGCCACAACCATCGGTCCGATTGG
* * * * *
21233379 ATCTTACAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTACGGACGTTG
1 AGCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGTGT-CGG-CGCTC
** * * * *
21233443 AGCCTACCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCTCAGCATGCTACCGG
63 AGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCA-CATGCTACCGA
*
21233508 TCCCGCTGCCACAACCATCGGTCCGATTGG
127 TCCCACTGCCACAACCATCGGTCCGATTGG
* * * * *
21233538 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGTTGGCGCTCA
1 AGCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAG--TGTCGGCGCTCA
* * * * *
21233603 GCCGGCCGGAGAGGCAGAATGCACAAACCGGGGACCGACCCGGTCCC
64 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCC
21233650 TCCTGCGTGC
Statistics
Matches: 215, Mismatches: 50, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
158 9 0.04
159 200 0.93
160 3 0.01
161 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.17
Consensus pattern (156 bp):
AGCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGTGTCGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCACATGCTACCGATCCC
ACTGCCACAACCATCGGTCCGATTGG
Found at i:21233727 original size:26 final size:26
Alignment explanation
Indices: 21233698--21233750 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21233688 CTGATCTGAT
*
21233698 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21233724 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21233750 C
1 C
21233751 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21234085 original size:170 final size:171
Alignment explanation
Indices: 21233723--21234091 Score: 404
Period size: 171 Copynumber: 2.2 Consensus size: 171
21233713 AACTCTGTAT
* * *
21233723 GCTTAGACTGGGGATGAATTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * *
21233788 TCGGTTAGAGAGGCATAATGCGTAAGCGAGGGATCAGCCCGGTCCCCTTCTACATGCTGCAGATC
66 TCGATCAGAGAGGCAGAATGCATAAGCGAGGGATCAGCCCGATCCCCTCCTACATGCTGCAGATC
* * * *
21233853 CCACTGTCGATCCTGCTACCACAAACTTCGGTTCGGCTAGG
131 CCACTGTCGATCCTGCTACCACAAACCTCGATCCGGCTAGA
* * * * *
21233894 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCGTGTGGGTGCTTAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * *
21233959 TCGATCGGAGCGGCAGAATGCATAAGCCGA-GGATCTGCCCGATCCCC-CCTACGTGCTGCCGAT
66 TCGATCAGAGAGGCAGAATGCATAAG-CGAGGGATCAGCCCGATCCCCTCCTACATGCTGCAGAT
** * ** * *
21234022 CCTGCTG-CTGGTCCTGCTGTCACAACCCTCGATCCAGTCTA-A
130 CCCACTGTC-GATCCTGCTACCACAAACCTCGATCC-GGCTAGA
*
21234064 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
21234092 TTAGACATGG
Statistics
Matches: 163, Mismatches: 32, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
169 1 0.01
170 63 0.39
171 96 0.59
172 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
TCGATCAGAGAGGCAGAATGCATAAGCGAGGGATCAGCCCGATCCCCTCCTACATGCTGCAGATC
CCACTGTCGATCCTGCTACCACAAACCTCGATCCGGCTAGA
Found at i:21234103 original size:26 final size:26
Alignment explanation
Indices: 21234065--21234117 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21234055 CCAGTCTAAT
21234065 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21234091 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21234117 C
1 C
21234118 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21234592 original size:158 final size:157
Alignment explanation
Indices: 21234091--21234592 Score: 515
Period size: 158 Copynumber: 3.2 Consensus size: 157
21234081 ACTCCGTATG
*
21234091 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * ** *
21234155 CCAGTCGGAGAGGCAGAATACGCAAGTCGGGGA-CTGACCCGGTCCCCCCTGCTTGCTATCAATC
65 CCAGTCGGAGAGGTAGAATGTGCAAGCCGGGGATC-GACCCGGTCCCCCCTGCATGCTGCCGATC
* * *
21234219 CTGCTGTCGCAACCCTCAGTCTGGTTCGAT
129 CTGCTGTCGTAACCCTCGGTC-GGTCCGAT
* * * ** * *
21234249 CTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGTTGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * *** *
21234314 CAACCGGAGAGGTATAATGCT-CAAACCGAGGATCGGCCCGGTGCCCCTCTATGTGCTGCCGGTC
66 CAGTCGGAGAGGTAGAATG-TGCAAGCCGGGGATCGACCCGGT-CCCCCCTGCATGCTGCCGATC
* * * * * * **
21234378 CCGCTGCCATAACCCTCGGTCCGACTGGGG
129 CTGCTGTCGTAACCCTCGGTCGGTC-CGAT
** * * *
21234408 CTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
21234473 CGGTCGGAGAGGTAGAATGTGCAAGCCGGGGATCGACTCGGTCCCCCCTGCATGCTGCCGATCCT
66 CAGTCGGAGAGGTAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTGCCGATCCT
21234538 GCTGTCGTAACCCTCGGCTCGGTCCGAT
131 GCTGTCGTAACCCTCGG-TCGGTCCGAT
21234566 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
21234593 TTAGACTAGG
Statistics
Matches: 264, Mismatches: 73, Indels: 14
0.75 0.21 0.04
Matches are distributed among these distances:
157 1 0.00
158 143 0.54
159 120 0.45
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CAGTCGGAGAGGTAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTGCCGATCCT
GCTGTCGTAACCCTCGGTCGGTCCGAT
Found at i:21235654 original size:157 final size:157
Alignment explanation
Indices: 21235288--21235778 Score: 483
Period size: 157 Copynumber: 3.1 Consensus size: 157
21235278 ACTCCATATG
* * * * * *
21235288 CTTAGACATGGAATGAACAT-CGTACGCCTAAGCCAACCCACCAAATGAACGTACGGGCGCTCAG
1 CTTAGACATGGAATGAAC-TCCATAAGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * *
21235352 CCGACCGGAGAGGCAGAATGCACAAGTCAGGATTGGCCCGATCCCCCCTACGTGCTGTCGATCCT
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGATTGGCCCGATCCCCCCTACGTGCTGCCGATCCC
* *
21235417 GCTGTCGCAACCCTCGGTCCGGTCCGAT
130 GCTGCCACAACCCTCGGTCCGGTCCGAT
* * *
21235445 CTTAGAC-TGAGAATGAACTCCATAAGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACATG-GAATGAACTCCATAAGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * *
21235509 CCGATCGAAGAGGCATAATGCGCAAGCCGGGATTGGCCC-AGTCCCCCTCTACGTGCTGCCGGTC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGATTGGCCCGA-TCCCCC-CTACGTGCTGCCGATC
** *
21235573 CCGCTGCCACAACCCTCGGTCCGGTTGGGGT
128 CCGCTGCCACAACCCTCGGTCCGG-TCCGAT
* * * * * *
21235604 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-TAAACGGGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCATAAGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * **
21235667 C-AGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTAATGCCGATCC
66 CGA-CCGGAGAGGCAGAATGCGCAAGCC-GGGATTGGCCCGATCCCCCCTACGTGCTGCCGATCC
* * ** * **
21235731 CACTGTCGTAACCCTCGGTCTGGTTTGAT
129 CGCTGCCACAACCCTCGGTCCGGTCCGAT
*
21235760 CTTAGA-TTGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
21235779 TCGTATGCTT
Statistics
Matches: 273, Mismatches: 50, Indels: 22
0.79 0.14 0.06
Matches are distributed among these distances:
156 9 0.03
157 176 0.64
158 82 0.30
159 6 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCATAAGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGATTGGCCCGATCCCCCCTACGTGCTGCCGATCCCG
CTGCCACAACCCTCGGTCCGGTCCGAT
Found at i:21235801 original size:26 final size:26
Alignment explanation
Indices: 21235760--21235810 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21235750 CTGGTTTGAT
*
21235760 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
21235786 CTTAGATTGAGG-ATGAACTCCGTAT
1 CTTAGATTG-GGAATGAACTCCGTAT
21235811 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:21236291 original size:159 final size:158
Alignment explanation
Indices: 21235981--21236412 Score: 458
Period size: 159 Copynumber: 2.7 Consensus size: 158
21235971 AACTCCATAT
* *
21235981 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
21236046 CCGACCGGAGAGGCAGAATGTGCAAGCTGGGGACCGGCCCGGTCCCCCCCTGCGTGCTATCGATC
66 CCGGCTGGAGAGGCAGAATGCGCAAGC-GAGGATCGACCCGGTCCCCCTCTACATGCTATCGATC
* * * * * *
21236111 CTGCTGTCGCAGCCCTTGGTCCAG-TCCAA
130 CCGCTGCCACAACCCTCGGTCCGGCT-CAA
* * * *
21236140 TCTTAGACTTGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
21236205 CCGGTTGGAGAGGCATAATACGCAAGTCGAGGATCGACCCGGTCCCCCTCTACATGCTGTCGGTC
66 CCGGCTGGAGAGGCAGAATGCGCAAG-CGAGGATCGACCCGGTCCCCCTCTACATGCTATCGATC
***
21236270 CCGCTGCCACAACCCTCGGTCCGGCTGGG
130 CCGCTGCCACAACCCTCGGTCCGGCTCAA
** * *
21236299 GCTTAGACATGGAATGAACTCCCTATAG-CTAAGCCAACCCACGAAACG-GATGTGCGGGGGCTC
1 GCTTAGACATGGAATGAACTCTGTAT-GCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTC
* *
21236362 AGCCGGCTGGACAGGCAGAATGCGTAAGCCGAGGATC-AGCCCGGTCCCCCT
64 AGCCGGCTGGAGAGGCAGAATGCGCAAG-CGAGGATCGA-CCCGGTCCCCCT
21236413 TGCGTGCTGC
Statistics
Matches: 225, Mismatches: 43, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
158 2 0.01
159 220 0.98
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCTGGAGAGGCAGAATGCGCAAGCGAGGATCGACCCGGTCCCCCTCTACATGCTATCGATCC
CGCTGCCACAACCCTCGGTCCGGCTCAA
Found at i:21236494 original size:26 final size:26
Alignment explanation
Indices: 21236458--21236513 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
21236448 CCGATCCGAT
21236458 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21236484 CTTAGGCTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21236510 CTTA
1 CTTA
21236514 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21236890 original size:697 final size:694
Alignment explanation
Indices: 21235267--21236905 Score: 1634
Period size: 698 Copynumber: 2.4 Consensus size: 694
21235257 AAAATTTTAG
* * *
21235267 ACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACA-TCGTACGCCTAAGCCAACCCACCA
1 ACTGGGAATGAACTCCACATGCTTAAACATGGAATGAACACT-GTATGCCTAAGCCAACCCA-CA
** * * * ** * * ** *
21235331 AATGAA-CGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAG-TCAGGATTGGCCCGAT
64 AAACAAGCGTGCAGGCGCTAAGCCGACCGGAGAGGCAGAATGTGC-AGCCCCGGACCGGACCGAT
* * * * ** *
21235394 -CCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAA
128 CCCCCCCTGCATGCTATCGATCCGGCTACCGC-ACCCTCGGTCCGGTCCAATCTTAGACTGAGAA
* * * *
21235458 TGAACTCCATAAGCATAAGTCAACCCAC-AAAACGAGCGTGCGGGCGCTGAGCCGATCGAAGAGG
192 TGAACT-CTTATGCCTAAGTCAACCCACGAAAACGAGCGTGCGGGCGCTGAGCCGGTCGAAGAGG
* * * *
21235522 CATAATGCGCAAGCCGGGATTGGCCCAGTCCCCCTCTACGTGCTGCCGGTCCCGCTGCCACAACC
256 CATAATACGCAAGCCGGGATCGACCCAGTCCCCCTCTACATGCTGCCGGTCCCGCTGCCACAACC
* * * *
21235587 CTCGGTCCGGTTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAACGGGC
321 CTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGAAACGGAC
* * * * *
21235652 GTGCGGGTGCTCAACCAGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTA
386 GTGCGGGGGCTCAACCAGCTGGACAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTA
* * * * * ** * * *
21235717 CGTAATGCCGATCCCACTGTCGTAACCCTCGGTCTGGTTTGATCTTAGATTGGGAATGAACTTCG
451 CGTAATGCAGATCCCACTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCA
* * *
21235782 TATGCTTAGATTGAGGATGAACTCCGTATACCTAAGTCAACACATGAAACGAGCGTGCGGGCACC
516 TATGCTTAGACTGAGGATGAACTCCATATACCTAAGTCAACACACGAAACGAGCGTGCGGGCACC
* * *
21235847 CAACCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGACTCGGTCCCCCATGTGGGCTGCCGA
581 CAACCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGACTCGATCCCCCATGCGGGCTACCGA
* * * **
21235912 TCCTGCTGCTGGTCCTGCTACCGCAATCCTCGGTCCAATTTGATCTTAT
646 TCCTGCTACTGGTCCTGCTACCGCAACCCTCAGTCCAATTCAATCTTAT
* * *
21235961 ACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAA
1 ACTGGGAATGAACTCCACATGCTTAAACATGGAATGAACACTGTATGCCTAAGCCAACCCACAAA
* * *** * *
21236026 ACAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGTGCAAGCTGGGGACCGGCCCGGTCC
66 ACAAGCGTGCAGGCGCTAAGCCGACCGGAGAGGCAGAATGTGC-AGCCCCGGACCGGACCGATCC
* * ** * *
21236091 CCCCCTGCGTGCTATCGATCCTGCTGTCGCAGCCCTTGGTCCAGTCCAATCTTAGACTTG-GAAT
130 CCCCCTGCATGCTATCGATCCGGCTACCGCA-CCCTCGGTCCGGTCCAATCTTAGAC-TGAGAAT
* * *
21236155 GAACTCTGTATGCCTAAGTCAACCCACG-AAACGAGCGTGCGGGCGCTAAGCCGGTTGGAGAGGC
193 GAACTCT-TATGCCTAAGTCAACCCACGAAAACGAGCGTGCGGGCGCTGAGCCGGTCGAAGAGGC
* * *
21236219 ATAATACGCAAGTCGAGGATCGACCCGGTCCCCCTCTACATGCTGTCGGTCCCGCTGCCACAACC
257 ATAATACGCAAGCCG-GGATCGACCCAGTCCCCCTCTACATGCTGCCGGTCCCGCTGCCACAACC
21236284 CTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATAG-CTAAGCCAACCCACGAAACGG
321 CTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTAT-GCCTAAGCCAACCCA-GAAACGG
* * * * * *
21236348 ATGTGCGGGGGCTCAGCCGGCTGGACAGGCAGAATGCGTAAGCCGAGGATCAGCCCGGTCCCCCT
384 ACGTGCGGGGGCTCAACCAGCTGGACAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCC
* ** * * *
21236413 TGCGTGCTGCATATCCTATTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTC
449 TACGTAATGCAGATCCCACTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTC
* * * * * * *
21236478 CATATGCTTAGGCTGGGGATGAACTCCATATGCTTAAGTCAACCCACGAAACGATCGTGCGGGCG
514 CATATGCTTAGACTGAGGATGAACTCCATATACCTAAGTCAACACACGAAACGAGCGTGCGGGCA
* * *** * * * *
21236543 CTCAGCCGGTTGGAGAGGCAGAATGCGCAAG-CTGGGGATC-AGTTCGATCCCCCCCTGCGTGCT
579 CCCAACCGACCGGAGAGGCAGAATGCACAAGTC-GGGGATCGA-CTCGAT-CCCCCATGCGGGCT
* * * ***
21236606 ACCGATCCTGTTACTGGTCCTGCTGCCGCAACCCTCATTCTGGTTCAATCTT-T
641 ACCGATCCTGCTACTGGTCCTGCTACCGCAACCCTCAGTCCAATTCAATCTTAT
* ** * **
21236659 GACTGGGAATGAACTCCGCATGCTTAAACAT-TCATGAA-ACTGTGTGCCTAAGCCAA-CCATGA
1 -ACTGGGAATGAACTCCACATGCTTAAACATGGAATGAACACTGTATGCCTAAGCCAACCCACAA
* * ** ** * * *
21236721 AAGAATCGTGCAGGCGCTAAGATGGACCGGAGAGAATGGCTTATTGT-C-GCCCCGG-TCGGACT
65 AACAAGCGTGCAGGCGCTAAG-CCGACC-G-GAG-A-GGCAGAATGTGCAGCCCCGGACCGGACC
*
21236783 GATCCCCCCTCT-CATG-TAT-GATTCATTCGGCTACCG-ACCC-CGGTCTGGTCC-ATC-TAGA
125 GATCCCCCC-CTGCATGCTATCGA-TC---CGGCTACCGCACCCTCGGTCCGGTCCAATCTTAGA
* * *
21236841 CTGAGAATGACCTCTTATGCCTAAGTCCATACCCACCGAAAATGAGCGTGCGGGCACTGAGCCGG
185 CTGAGAATGAACTCTTATGCCTAAGT-CA-ACCCA-CGAAAACGAGCGTGCGGGCGCTGAGCCGG
21236906 CCAGAGAGTG
Statistics
Matches: 784, Mismatches: 131, Indels: 57
0.81 0.13 0.06
Matches are distributed among these distances:
693 19 0.02
694 112 0.14
695 24 0.03
696 158 0.20
697 161 0.21
698 214 0.27
699 87 0.11
700 2 0.00
701 7 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (694 bp):
ACTGGGAATGAACTCCACATGCTTAAACATGGAATGAACACTGTATGCCTAAGCCAACCCACAAA
ACAAGCGTGCAGGCGCTAAGCCGACCGGAGAGGCAGAATGTGCAGCCCCGGACCGGACCGATCCC
CCCCTGCATGCTATCGATCCGGCTACCGCACCCTCGGTCCGGTCCAATCTTAGACTGAGAATGAA
CTCTTATGCCTAAGTCAACCCACGAAAACGAGCGTGCGGGCGCTGAGCCGGTCGAAGAGGCATAA
TACGCAAGCCGGGATCGACCCAGTCCCCCTCTACATGCTGCCGGTCCCGCTGCCACAACCCTCGG
TCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGAAACGGACGTGCG
GGGGCTCAACCAGCTGGACAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTACGTAA
TGCAGATCCCACTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGC
TTAGACTGAGGATGAACTCCATATACCTAAGTCAACACACGAAACGAGCGTGCGGGCACCCAACC
GACCGGAGAGGCAGAATGCACAAGTCGGGGATCGACTCGATCCCCCATGCGGGCTACCGATCCTG
CTACTGGTCCTGCTACCGCAACCCTCAGTCCAATTCAATCTTAT
Found at i:21237912 original size:26 final size:26
Alignment explanation
Indices: 21237874--21237926 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21237864 GGCTCAAAAT
21237874 CTTAGACTAGGAATGAACCCCGTATG
1 CTTAGACTAGGAATGAACCCCGTATG
* *
21237900 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACCCCGTATG
21237926 C
1 C
21237927 CTAAAGCCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCCGTATG
Found at i:21238980 original size:354 final size:341
Alignment explanation
Indices: 21238171--21239055 Score: 929
Period size: 354 Copynumber: 2.5 Consensus size: 341
21238161 ATTGACCTAG
** * * * * *
21238171 TCCCCCTCTGTGTGCTGCCGGTCCTGCTACCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGA
1 TCCCCCTCTGCATGCTGCCAGTCTTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGA
* * * *
21238236 ATGAACTCCCTATGCCTAAGCCAACCGCATGAAACGGGTGTGCGGGCGCTCA-ACTGA-CTGGTG
66 ATGAACTCCCTATGCCTAAGCCAACC-CACGAAACGGGCGTGCAGGCGCTCAGAC-GATC-GGAG
* * * * ** * *
21238299 AGGCAAAATGCGCAAG-TCGGGGATCGGCTCAGTCCGTCCTCGTGCTGCCGATCCTTCTGTCGTA
128 AGGCAGAATGCGCAAGCT-AGGGATC-GCCCGGTCCCCCCTCGTGCTGCCGATCCTACTGCCGTA
* * * *
21238363 ACCCTCGATCCGATCTGATCTTGGAATGGGAATGAACTCTGTATGCTTAGATTGGGGATGAACTC
191 ACCATCGATCCGATCTGATCTTAGAATGGGAATGAACTCTATATGCTTAGACTGGGGATGAACTC
* * * * * * *
21238428 CGTATGCCCAAGTCAACCCACGGAGCAAGCGAGCAGGCGCTGAGCCGACCGAAGAGGCATAATGG
256 CGTATGCCCAAATCAACCCACGAAACAAGCGAGCAGGCGCTCAGCCAACCGAAGAGGCAAAATGA
* *
21238493 GCAAGCCGAGAATCGGCCCGA
321 ACAAGCCGAGAATCAGCCCGA
* * *
21238514 TCCCCCTCTGCATGCTGCCAGGCTCGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGA
1 TCCCCCTCTGCATGCTGCCAGTCTTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGA
* * * * **
21238579 ATGAACTCCCTATGCCTAAGCTAACCCACGAAACTGGCGTACAGGCGCTCAGTCGATCAAAGAGG
66 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGACGATCGGAGAGG
* * *
21238644 CAGAATGCGCAAGCTAGAGATTGATCCGGTCCCCCCTACGTGCTGCCGATCCTACTGCCGTAACC
131 CAGAATGCGCAAGCTAGGGATCG-CCCGGTCCCCCCT-CGTGCTGCCGATCCTACTGCCGTAACC
* * * *
21238709 ATCGGTCTGGT-TCGATCTTAGACTGGGAATGAACTC-ATATGCTTAGACTGGGGATGAACTCCG
194 ATCGATCCGATCT-GATCTTAGAATGGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCCG
* * * * *
21238772 TATGCCTAAATCAACCCATGAAACGAGCGTA-CAGGCGTTCAGCCAACC-AGAGAGGTAAAATGA
258 TATGCCCAAATCAACCCACGAAACAAGCG-AGCAGGCGCTCAGCCAACCGA-AGAGGCAAAATGA
* * *
21238835 ACAAGTCGGGGATCAGCCCGA
321 ACAAGCCGAGAATCAGCCCGA
*
21238856 TCCCCCTCTGTGTGCTGCCGATCCTGCTGCCAGTCTTGCTACCACAACCCTCGGTCCGACTGGGT
1 T-CCCC-C----T-CTG-C-A---TGCTGCCAGTCTTGCTACCACAACCCTCGGTCCGACTGGGG
* * * *
21238921 CTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAGCGGGCATGCAGGCGCTCAGC
54 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGA
* *
21238986 CGATCGGAGTGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCT
119 CGATCGGAGAGGCAGAATGCGCAAGCTAGGGATC-GCCCGGTCCCCCCT-CGTGCTGCCGATCCT
*
21239051 GCTGC
182 ACTGC
21239056 TGGTCCTGCT
Statistics
Matches: 445, Mismatches: 76, Indels: 31
0.81 0.14 0.06
Matches are distributed among these distances:
341 2 0.00
342 140 0.31
343 141 0.32
344 1 0.00
348 1 0.00
349 3 0.01
350 1 0.00
351 1 0.00
354 154 0.35
355 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (341 bp):
TCCCCCTCTGCATGCTGCCAGTCTTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGA
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGACGATCGGAGAGG
CAGAATGCGCAAGCTAGGGATCGCCCGGTCCCCCCTCGTGCTGCCGATCCTACTGCCGTAACCAT
CGATCCGATCTGATCTTAGAATGGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCCGTAT
GCCCAAATCAACCCACGAAACAAGCGAGCAGGCGCTCAGCCAACCGAAGAGGCAAAATGAACAAG
CCGAGAATCAGCCCGA
Found at i:21239263 original size:354 final size:346
Alignment explanation
Indices: 21238171--21239407 Score: 926
Period size: 354 Copynumber: 3.5 Consensus size: 346
21238161 ATTGACCTAG
* * * * * * *
21238171 TCCCCCTCTGTGTGCTGCCGGTCCTGCTACCA----CAACCCTCAGTCTGGCTGGGGCTTAGACA
1 TCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACTGCCAACCCTCGGTCCGACTGGGTCTTAGACA
* * * * *
21238232 TGGAATGAACTCCCTATGCCTAAGCCAACCGCATGAAACGGGTGTGCGGGCGCTCAACTGA-CTG
66 TGGAATGAACTCCCTATGCCTAAGCCAACC-CACGAAACGGGCGTGCAGGCGCTCAGCCGATC-G
* * * * * * * * ** * *
21238296 GTGAGGCAAAATGCGCAAGTCGGGGATCGGCTCAGTCCGTCCT-CGTGCTGCCGATCCTTCTGTC
129 GAGAGGCAGAATGCGCAAGCCAGAGATCGACCCGGTCCCCCCTACGTGCTGCCGATCCTACTGCC
* * * * * * * * * *
21238360 GTAACCCTCGATC-CGATCTGATCTTGGAATGGGAATGAACTCTGTATGCTTAGATTGGGGATGA
194 GTAACCATCGATCTAGTTC-AATCTTAGACTGGGAATGAACTC-ATATGCTTAAACTGGGAATGA
* ** * * * * *
21238424 ACTCCGTATGCCCAAGTCAACCCACGGAGC-AAGCG-AGCAGGCGCTGAGCCGACC-GAAGAGGC
257 ACTCCGTATGCCTAAACCAACCCATGAAACGAA-CGTA-CAGGCGCTCAGCCAACCAG-AGAGGC
* ** * * * *
21238486 ATAATGGGCAAGCCGAGAATCGGCCCGA
319 AAAATGAACAAGTCGAGGAGCAGCCCGA
* ** * * *
21238514 TCCCCCTCTGCATGCTGCC-AGGCT-C-GCTAC--CACAACCCTCGATCCGACTGGGGCTTAGAC
1 TCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACTGC-CAACCCTCGGTCCGACTGGGTCTTAGAC
* * * * **
21238574 ATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACTGGCGTACAGGCGCTCAGTCGATCAA
65 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGCCGATCGG
* * *
21238639 AGAGGCAGAATGCGCAAGCTAGAGATTGATCCGGTCCCCCCTACGTGCTGCCGATCCTACTGCCG
130 AGAGGCAGAATGCGCAAGCCAGAGATCGACCCGGTCCCCCCTACGTGCTGCCGATCCTACTGCCG
* * * * *
21238704 TAACCATCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCATATGCTTAGACTGGGGATGAACT
195 TAACCATCGATCTAGTTCAATCTTAGACTGGGAATGAACTCATATGCTTAAACTGGGAATGAACT
* * * *
21238769 CCGTATGCCTAAATCAACCCATGAAACGAGCGTACAGGCGTTCAGCCAACCAGAGAGGTAAAATG
260 CCGTATGCCTAAACCAACCCATGAAACGAACGTACAGGCGCTCAGCCAACCAGAGAGGCAAAATG
* *
21238834 AACAAGTCGGGGATCAGCCCGA
325 AACAAGTCGAGGAGCAGCCCGA
*
21238856 TCCCCCTCTGTGTGCTGCCGATCCTGCTGCCAGTCTTGCTACCACAACCCTCGGTCCGACTGGGT
1 TCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA--C-TG----C-CAACCCTCGGTCCGACTGGGT
* * *
21238921 CTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAGCGGGCATGCAGGCGCTCAGC
58 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGC
* * * *
21238986 CGATCGGAGTGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCT
123 CGATCGGAGAGGCAGAATGCGCAAGCCAGAGATCGACCCGGTCCCCCCTACGTGCTGCCGA---T
* * *
21239051 GCTGCTGGTCCTGCTGTCGTAACCCTCGATCTAGTTCAATCTTAGACTGGGAATGAACTCCGTAT
185 -C--C---TACTGC---CGTAACCATCGATCTAGTTCAATCTTAGACTGGGAATGAACT-CATAT
* * * *
21239116 GCTTAAACAT-GGAATGAACTCCGTGTGCCTAAGCCAACCCATGAAACGAACGTGCGGGCGCTCA
240 GCTTAAAC-TGGGAATGAACTCCGTATGCCTAAACCAACCCATGAAACGAACGTACAGGCGCTCA
** * *
21239180 GCTGGA-CAGAGAGGCACAATGCACAAGCTC-AGGAGC-GACCCGA
304 GC-CAACCAGAGAGGCAAAATGAACAAG-TCGAGGAGCAG-CCCGA
* * * *
21239223 T-CCCCTCTGCGTGCTGTCGATCCTGCTG-C-C-G-CAGCCCTCGGTTCGATCT-GATCTTAGAC
1 TCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACTGCCAACCCTCGGTCCGA-CTGGGTCTTAGAC
* * * * * *
21239282 -TGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTGAGCCGACCG
65 ATG-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGCCGATCG
* ** * * * * *
21239346 GATAGGC-GTAATGCATAAGCCGGGGGGATCGACCCAGTCCCACTCTACGTGCTGCAGATCCT
129 GAGAGGCAG-AATGCGCAAGCC--AGAGATCGACCCGGTCCC-CCCTACGTGCTGCCGATCCT
21239408 GCTACCACAA
Statistics
Matches: 719, Mismatches: 131, Indels: 83
0.77 0.14 0.09
Matches are distributed among these distances:
340 2 0.00
341 1 0.00
342 156 0.22
343 129 0.18
344 4 0.01
345 3 0.00
347 1 0.00
348 1 0.00
351 1 0.00
353 4 0.01
354 221 0.31
355 2 0.00
356 15 0.02
357 14 0.02
358 1 0.00
360 2 0.00
362 1 0.00
363 5 0.01
365 1 0.00
366 64 0.09
367 87 0.12
368 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (346 bp):
TCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACTGCCAACCCTCGGTCCGACTGGGTCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGCCGATCGGA
GAGGCAGAATGCGCAAGCCAGAGATCGACCCGGTCCCCCCTACGTGCTGCCGATCCTACTGCCGT
AACCATCGATCTAGTTCAATCTTAGACTGGGAATGAACTCATATGCTTAAACTGGGAATGAACTC
CGTATGCCTAAACCAACCCATGAAACGAACGTACAGGCGCTCAGCCAACCAGAGAGGCAAAATGA
ACAAGTCGAGGAGCAGCCCGA
Found at i:21239529 original size:161 final size:155
Alignment explanation
Indices: 21239116--21239582 Score: 433
Period size: 161 Copynumber: 2.9 Consensus size: 155
21239106 AACTCCGTAT
* * *
21239116 GCTTAAACATGGAATGAACTCCGTGTGCCTAAGCCAACCCATGAAACGAA-CGTGCGGGCGCTCA
1 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-AAGCGTGCGGGCGCTCA
* * * *
21239180 GCTGGA-CAGAGAGGCACAATGCACAAGCTCAGGAGCGACCCGATCCCCTCTGCGTGCTGTCGAT
65 GC-CGACCAGAGAGGCAGAATGCACAAGC-CGGGATCGACCCG-TCCCCTCTGCGTGCTG-CGAT
* * * * *
21239244 CCTGCTGCCGCAGCCCTCGGTTCGATCTGA
126 CCTGCTACCACAACCCTCGGTACGAGCTGA
* * * ** * *
21239274 TCTTAGAC-TGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTGA
1 GCTTAGACATGA-AATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCA
* * * *
21239338 GCCGACCGGATAGGC-GTAATGCATAAGCCGGGGGGATCGACCCAGTCCCACTCTACGTGCTGCA
65 GCCGACCAGAGAGGCAG-AATGCACAAGCC---GGGATCGACCC-GTCCC-CTCTGCGTGCTGC-
*
21239402 GATCCTGCTACCACAACCCTCGGTACG-GCTGGG
123 GATCCTGCTACCACAACCCTCGGTACGAGCT-GA
* * * *
21239435 GCTTAGACATGAAATGAACTCTGTATGCGTAAGCCAACCCATGAAACAAGCGTGTGGGCGCTCAA
1 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
* * * **
21239500 CCGACCATAGAGGCAGAATGCGCAAGCCGGGATCGGTCTGGT-CCCTCCTGCGTGCTGCCGATCC
66 CCGACCAGAGAGGCAGAATGCACAAGCCGGGATC-GACCCGTCCCCT-CTGCGTGCTG-CGATCC
*
21239564 TGCTACCACAACCATCGGT
128 TGCTACCACAACCCTCGGT
21239583 TCGATTCGAT
Statistics
Matches: 248, Mismatches: 45, Indels: 33
0.76 0.14 0.10
Matches are distributed among these distances:
156 2 0.01
157 40 0.16
158 77 0.31
159 2 0.01
160 16 0.06
161 107 0.43
162 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (155 bp):
GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
CCGACCAGAGAGGCAGAATGCACAAGCCGGGATCGACCCGTCCCCTCTGCGTGCTGCGATCCTGC
TACCACAACCCTCGGTACGAGCTGA
Found at i:21239629 original size:26 final size:26
Alignment explanation
Indices: 21239593--21239645 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21239583 TCGATTCGAT
21239593 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
21239619 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
21239645 C
1 C
21239646 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:21240727 original size:159 final size:159
Alignment explanation
Indices: 21240319--21240765 Score: 451
Period size: 159 Copynumber: 2.8 Consensus size: 159
21240309 AACTCCGTAT
*
21240319 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCCTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCAG
* * * * *
21240384 CCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCTGGTCCCCC-CTGTATGCTGTCGATC
66 CCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCAGCCCGGTCCCCCTCTGTATGCTGCCGATC
* ** * *
21240448 CTACTACTGCAACCCTTGGTTCGGTCTGA
131 CCACTACCACAACCCTCGATTCGGTCTGA
* * * * * * *
21240477 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCATAAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCA
* * * ** * * *
21240541 GCC-AGCCGAACAGGCATAATGTGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGTGTGCTGCC-A
65 GCCGA-CCGGAGAGGCAAAATGCACAAGCCGGGGATCAGCCCGGTCCCCCTCTGTATGCTGCCGA
* * *
21240604 GTCCCGCTGCCACAACCCTCGA-TCTGG-CTGGG
129 -TCCCACTACCACAACCCTCGATTC-GGTCT-GA
* * * * *
21240636 GCTTAGACATGGATTGAACTCCCTATACCTAAGCCAACCCACAAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCAG
* * *
21240701 CCGACCGGAGAGGTAAAATGCACAAGCCGGGGATCAGCTCGGTCCGCCCTC--CATGCTGCCGAT
66 CCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCAGCCCGGTCC-CCCTCTGTATGCTGCCGAT
21240764 CC
130 CC
21240766 TGTTGTCGCA
Statistics
Matches: 229, Mismatches: 50, Indels: 20
0.77 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 107 0.47
159 113 0.49
160 7 0.03
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCAG
CCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCAGCCCGGTCCCCCTCTGTATGCTGCCGATC
CCACTACCACAACCCTCGATTCGGTCTGA
Found at i:21240824 original size:26 final size:26
Alignment explanation
Indices: 21240795--21240847 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21240785 CTGGTCTGAT
*
21240795 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21240821 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21240847 C
1 C
21240848 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21240979 original size:343 final size:339
Alignment explanation
Indices: 21240478--21241561 Score: 1146
Period size: 343 Copynumber: 3.1 Consensus size: 339
21240468 TCGGTCTGAT
* * * *
21240478 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATAAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
* * * * * * *
21240543 CAGCCGAACAGGCATAATGTGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGTGTGCTGCCAGTCC
66 CGGTCGAAGAGGCATAATGCGCAAGC-GAGGATCAGCCCGGTCCCCCTCTG-CTGCTG-CAGTCC
* * * *
21240608 CGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGATTGAACTCCCTATACCTAAGCCAA
128 CGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* *
21240673 CCCACAAAACGGGCATGCGGGCGCTCAGCCGACCGGAGAGGTAAAATGCACAAGCCGGGGATCAG
193 CCCACAAAACGGGCATGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCAG
*
21240738 CTCGGTCCGCCCTCCATGCTGCCGATCCTGTTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACT
258 CTCGGTCCGCCCTCCATGCTGCCGATCCTGTTGTCGCAACCCTCGGTCCGGT-TGATCTTAGACT
21240803 GGGAATGAACTCTGTATG
322 GGGAATGAACTCTGTATG
*
21240821 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
* * *
21240886 CGGTCGAAGAGGCATAATGCGTAAGTCGACGATCAGCCCGGTCCCCCTCTGCATGCTGTCGGTCC
66 CGGTCGAAGAGGCATAATGCGCAAG-CGAGGATCAGCCCGGTCCCCCTCTGC-TGCTG-CAGTCC
*
21240951 CGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
128 CGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * **
21241016 CCCACGAAACGGGCGTGCGGACGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGATGGGGATCAG
193 CCCACAAAACGGGCATGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCAG
* * * * * ** * * *
21241081 CTCGGTCCCCCCTGCGTACTGTCGATCCTGCCGTCGTAACCCTTGATCCGGTTCGATCTTAGACT
258 CTCGGTCCGCCCTCCATGCTGCCGATCCTGTTGTCGCAACCCTCGGTCCGGTT-GATCTTAGACT
*
21241146 GGGAATGAACTTTGTATG
322 GGGAATGAACTCTGTATG
* *
21241164 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG----C-GC
* * * *
21241229 TG-GCCGGAGAGGTCGCTCAGAGAGGCACAATGCGCAAGCCAAGGATTAGCCCGAT---CC-C-G
61 TGAGCC-----GGTCG---A-AGAGGCATAATGCGCAAG-CGAGGATCAGCCCGGTCCCCCTCTG
** * * *
21241288 CTGC--CAGTCTTGCTGCCACATCCCTCGGTCCGACTGGGTCTTAGACATGGAATGAACTCCCTA
116 CTGCTGCAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTA
* * * *
21241351 TGCCTAAGCCAACCCACGAAGA-GGGCATGC-AGCGCTCAGCGGACCGGAGAGGTAGAATGCGTA
181 TGCCTAAGCCAACCCAC-AAAACGGGCATGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCA
* * * * * *
21241414 AGCCGAGGATCTGCTCGGTCCCCCCTGCGTGCTACCGATCCTGCTGCTGGTCCTGTTGCCGCAAC
245 AGCCGGGGATCAGCTCGGT----CC-GC--CCT-CC-A---TGCTGCCGATCCTGTTGTCGCAAC
* *
21241479 CCTCGGTCCGATTTGATCTTAGACTGGGAATGAACTCCGTATG
298 CCTCGGTCCG-GTTGATCTTAGACTGGGAATGAACTCTGTATG
* * * *
21241522 CCTAAACAT-GGAATGAACTCCGTGTGCCTAAGCCAACCCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCA
21241562 CAAAATGAGC
Statistics
Matches: 617, Mismatches: 92, Indels: 49
0.81 0.12 0.06
Matches are distributed among these distances:
342 1 0.00
343 351 0.57
344 1 0.00
346 43 0.07
347 80 0.13
348 6 0.01
350 5 0.01
351 3 0.00
352 6 0.01
353 4 0.01
354 1 0.00
355 1 0.00
356 28 0.05
358 84 0.14
359 3 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (339 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
CGGTCGAAGAGGCATAATGCGCAAGCGAGGATCAGCCCGGTCCCCCTCTGCTGCTGCAGTCCCGC
TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
ACAAAACGGGCATGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGCTC
GGTCCGCCCTCCATGCTGCCGATCCTGTTGTCGCAACCCTCGGTCCGGTTGATCTTAGACTGGGA
ATGAACTCTGTATG
Found at i:21241188 original size:26 final size:26
Alignment explanation
Indices: 21241138--21241190 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21241128 CCGGTTCGAT
**
21241138 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21241164 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21241190 C
1 C
21241191 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21241879 original size:160 final size:158
Alignment explanation
Indices: 21241691--21241988 Score: 375
Period size: 160 Copynumber: 1.9 Consensus size: 158
21241681 GTAGACTGGG
* ** * * * *
21241691 AATGAACTCTGTATGCCTAAGTCAACCCACGAAAC-GAGCGTGCGGGTGCTGAGCCGACTGGAGA
1 AATGAACTCCGTATAACTAAGCCAACCCACGAAACAG-GCATGCGGGTGCTCAGCCGACCGGAGA
* *
21241755 GGC-GTAATGCGCAAGTCGAGGATCAGCCCGATCCCTCTCTGCGTGCTGACAGATCCCGCTGCCA
65 GGCAG-AATGCGCAAGTAGAGGATCAGCCCGATCCC-CCCTGCGTGCTGAC-GATCCCGCTGCCA
21241819 CAACCCTCGGTCCGGCTGGGGCTTAGACATGA
127 CAACCCTCGGTCCGGCTGGGGCTTAGACATGA
* * * *
21241851 AATGAACTCCGTATAACTAAGCCAACCCATGAAACAGGCATGTGGGTGCTCAGTCTACCGGAGAG
1 AATGAACTCCGTATAACTAAGCCAACCCACGAAACAGGCATGCGGGTGCTCAGCCGACCGGAGAG
* * * * *
21241916 GCAGAATGCGCAAGTAGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAAC
66 GCAGAATGCGCAAGTAGAGGATCAGCCCGATCCCCCCTGCGTGCTGACGATCCCGCTGCCACAAC
*
21241981 CCTTGGTC
131 CCTCGGTC
21241989 TGGTCCGATC
Statistics
Matches: 117, Mismatches: 19, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
158 22 0.19
159 12 0.10
160 81 0.69
161 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
AATGAACTCCGTATAACTAAGCCAACCCACGAAACAGGCATGCGGGTGCTCAGCCGACCGGAGAG
GCAGAATGCGCAAGTAGAGGATCAGCCCGATCCCCCCTGCGTGCTGACGATCCCGCTGCCACAAC
CCTCGGTCCGGCTGGGGCTTAGACATGA
Found at i:21242027 original size:26 final size:26
Alignment explanation
Indices: 21241998--21242047 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
21241988 CTGGTCCGAT
21241998 CTTAGACTGAGAATGAACTCCGTAAG
1 CTTAGACTGAGAATGAACTCCGTAAG
* *
21242024 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGAGAATGAACTCCGTA
21242048 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTAAG
Found at i:21242995 original size:343 final size:341
Alignment explanation
Indices: 21242486--21243889 Score: 1238
Period size: 343 Copynumber: 4.1 Consensus size: 341
21242476 TATCTTAGAC
* * ** * *
21242486 TGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGCGTTGAGCCGACCGA
1 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTGAGCCGGCCGA
* * * * *
21242551 AAAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTGCGTGCTG-CTGGTCCCGCTAC
66 AGAGGCATAATGCGCAAGCTGGGGATCGACTCGATCCCCCTCTGCGTGCTGTC-GATCCCGCTGC
* *
21242615 CACAACCCTCGGTCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
130 CACAACCCTCGGTCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * * * *
21242680 AAACGGGCGTGTGGGCGCTCAGCCGACCAGAGAGGCAAAATGCGCAAGCCGGGGATCGACTCGAT
194 AAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGT
** * *
21242745 CTGTCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAAT
259 C-CCCCTACATGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
*
21242810 GAACTTCGCATACTTAAAT
323 GAACTTCGTATACTTAAAT
*
21242829 TGGGGATGAACTCCGTATGCCTAAGTCAACCAACAAAACAAGCGTGCGGGCGCTGAGCCGGCCGA
1 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTGAGCCGGCCGA
* * * *
21242894 AGAGGCATAATGCGTAAG-TCGAGGATCGACTCGGTCCCCCTCTGCATGCTGTCGATCCCGCTGC
66 AGAGGCATAATGCGCAAGCT-GGGGATCGACTCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGC
* * *
21242958 CACAACCCTTGGTTCGACTGGGGCTTAGACGTGGAATGAACTCCCTAAGCCTAAGCCAACCCACG
130 CACAACCCTCGG-TCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* ** * * *
21243023 AAACGGGCGTGCGGGCGCTCAGCCGGTCAGAGAGACAGAAT-CATCAAGCCGGGGA-CTGGCCCG
194 AAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGC-GCAAGCCGGGGATC-GACCCG
* * * * *
21243086 GTCCCCTCTGCATGCTGTCGATCCTGCTGTCGTAACCCTCAGTCCGATCCGATCTTAGATTGGGA
257 GTCCCC-CTACATGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* *
21243151 ATGAACTTCGTATGCTTAAAC
321 ATGAACTTCGTATACTTAAAT
* * ** * ** *
21243172 TGGGGATGAACTCCATATGCCTAAGTAAACCCATGAAACGAGCGCACGGGCGCTCAGCCGGCTGG
1 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTGAG-C--C---
* * * *
21243237 AGAGGCCAGCTAGAGAGGCATAATGCGTAAG-TCGGGGAT-TAGCTCGATCCCCCTCTACGTACT
60 ---GGCC-G--A-AGAGGCATAATGCGCAAGCT-GGGGATCGA-CTCGATCCCCCTCTGCGTGCT
* * * *
21243300 GTCGATCCCGTTGCCGGTCCTACTGCCATAACCCTCGGTCCGACAGGGGTTTAGAGATGGAATGA
116 GTCGAT--C----CC-G-----CTGCCACAACCCTCGGT-CGACTGGGGCTTAGACATGGAATGA
** * * * * **
21243365 ACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAACTGACTGGAGAGGCAGA
168 ACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGA
* * * * *
21243430 ATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTATTGGTCCTGCTG-CTGCAACCCTC
233 ATGCGCAAGCCGGGGATCGACCCGGT-CCCCCTACATGCTGTCGATCCTGCTGTC-GCAACCCTC
**
21243494 GGTCTTGT-CGAATCTTAGACT-GG---GAA--T-G-A-AC------
296 GGTCCGGTCCG-ATCTTAGACTGGGAATGAACTTCGTATACTTAAAT
** * * * * * *
21243525 ------T----T-CGTATGCCTAAGTCAACCCATGAAACAAGCGTGCAGGTGTTGAGTCGGTCGG
1 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTGAGCCGGCCGA
** * * * * **
21243579 AGAGGCATAATGCGCAAGCTGGGGATCGGTTCGGTCCCCTTCTGCGTGCTGGCGGTCTTGCTGCC
66 AGAGGCATAATGCGCAAGCTGGGGATCGACTCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCC
*
21243644 ACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACGCACGA
131 ACAACCCTCGGTC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * * * * * *
21243709 AACTAGCGTGCAGGCGCTCAGCCGGCTAGAGAGGCAGAATGCGCAAGCGGGGGATTGGCTCGGTC
195 AACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTC
* * * *
21243774 CCCCTTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTCGACTGGGAATG
260 CCCC-TACATGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATG
* * *
21243839 AACTCCGTATGCTTAGAT
324 AACTTCGTATACTTAAAT
21243857 TGGGGATGAACTCCGTATGCCTAAGTCAACCCA
1 TGGGGATGAACTCCGTATGCCTAAGTCAACCCA
21243890 TGAAACGAGC
Statistics
Matches: 845, Mismatches: 146, Indels: 140
0.75 0.13 0.12
Matches are distributed among these distances:
316 6 0.01
317 152 0.18
318 4 0.00
321 3 0.00
322 1 0.00
324 1 0.00
325 1 0.00
326 1 0.00
327 1 0.00
329 43 0.05
330 1 0.00
332 1 0.00
333 3 0.00
338 1 0.00
339 1 0.00
342 40 0.05
343 356 0.42
344 5 0.01
346 1 0.00
347 1 0.00
352 4 0.00
353 1 0.00
355 2 0.00
356 48 0.06
358 1 0.00
359 1 0.00
360 1 0.00
361 1 0.00
362 3 0.00
363 1 0.00
364 3 0.00
367 6 0.01
368 144 0.17
369 6 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (341 bp):
TGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTGAGCCGGCCGA
AGAGGCATAATGCGCAAGCTGGGGATCGACTCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCC
ACAACCCTCGGTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
ACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCC
CCCTACATGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
CTTCGTATACTTAAAT
Found at i:21243603 original size:158 final size:157
Alignment explanation
Indices: 21243358--21243850 Score: 517
Period size: 158 Copynumber: 3.1 Consensus size: 157
21243348 GTTTAGAGAT
* * * * *
21243358 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCA-ACTGACTGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGTGCTCAGAC-GGCTGGA
* * * * * * *
21243422 GAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTATTGGTCCTGCTGCTGC
65 GAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGGTCCTGCTGCCGC
21243487 AACCCTCGGTCTTGTC-GAATCTTAGACTG
130 AACCCTCGGTC-TGTCTG-ATCTTAGACTG
* * * * * *
21243516 GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCAGGTGTTGAGTCGG-TCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGTGCTCAGACGGCT-GGA
* * * * * * *
21243580 GAGGCATAATGCGCAAGCTGGGGATCGGTTCGGTCCCCTTCTGCGTGCTGGCGGTCTTGCTGCCA
65 GAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCC-CCTGCGTGCTGTCGGTCCTGCTGCCG
* **
21243645 CAACCCTCGGTCTGACTGGGGCTTAGACAT-
129 CAACCCTCGGTCTGTCT-GATCTTAGAC-TG
* * * * * *
21243675 GGAATGAACTCCCTATGCCTAAGCCAACGCACGAAACTAGCGTGCAGGCGCTCAGCCGGCTAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGTGCTCAGACGGCTGGAG
* * * * *
21243740 AGGCAGAATGCGCAAGCGGGGGATTGGCTCGGTCCCCCTTGCATGCTGTCGATCCTGCTGCCGCA
66 AGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGGTCCTGCTGCCGCA
* *
21243805 ACCCTCGGTCCGGTCTGATCTTCGACTG
131 ACCCTCGGT-CTGTCTGATCTTAGACTG
21243833 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
21243851 TTAGATTGGG
Statistics
Matches: 270, Mismatches: 56, Indels: 18
0.78 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 138 0.51
159 127 0.47
160 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGTGCTCAGACGGCTGGAG
AGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGGTCCTGCTGCCGCA
ACCCTCGGTCTGTCTGATCTTAGACTG
Found at i:21250495 original size:26 final size:26
Alignment explanation
Indices: 21250456--21250506 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
21250446 GGCTCAAAAT
*
21250456 CTTAGACTGCGAATGAACTCTGTATA
1 CTTAGACTGCGAATGAACTCCGTATA
*
21250482 CTTAGACATG-GAATGAGCTCCGTAT
1 CTTAGAC-TGCGAATGAACTCCGTAT
21250507 GCCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATA
Found at i:21250693 original size:26 final size:26
Alignment explanation
Indices: 21250652--21250704 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21250642 CCGGTCCGAT
21250652 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21250678 CTTAGACTTGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21250704 C
1 C
21250705 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21252297 original size:26 final size:26
Alignment explanation
Indices: 21252259--21252309 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21252249 GGCTCAAAAT
*
21252259 CTTAGACTGGGAATGAACTCTGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
21252285 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
21252310 GCCTAAGCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:21252535 original size:50 final size:50
Alignment explanation
Indices: 21252475--21252574 Score: 182
Period size: 50 Copynumber: 2.0 Consensus size: 50
21252465 ATCCAATCTT
*
21252475 AGATTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTG
1 AGATTAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTG
*
21252525 AGATTAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTG
1 AGATTAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTG
21252575 CAAGCACTGA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (50 bp):
AGATTAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTG
Found at i:21252889 original size:26 final size:26
Alignment explanation
Indices: 21252839--21252891 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21252829 CCCGTCTGAT
**
21252839 CTTAGACTGGAAATGAACTTTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
21252865 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
21252891 C
1 C
21252892 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:21254970 original size:159 final size:159
Alignment explanation
Indices: 21254516--21255019 Score: 378
Period size: 159 Copynumber: 3.2 Consensus size: 159
21254506 AACTCTGTAT
* * * * *
21254516 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAACGAGCGTGCGGCCACTCA
1 GCTTAGACTA-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
*** * * ** * * * ** *
21254580 GCCTGCCGAAAAGTTAGAATGCACAAGCCGAGGA-CCGACCCGATCCCCC-CTACGTATTG-TCA
65 GCCAATCGGAGAGGCAGAATGCACAAGCAGAGGATCAG-CCCGATCCCCCTCTCCGTGCTGCT-G
** ** * * **
21254642 ATCCTGCTGCCGTAACCCTCAGTTCGGTCCAA
128 ATCCCACTGCCACAACCCTCAATCCGGTCTGA
* * * * * * *
21254674 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGCTGAG
1 GCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * * * * *
21254739 TCGATCGGAGAGGCATAATGCGCAAGCCGAGGTTCGGCCCGATCCCCTTCTGCGTGCTGCTGGTC
66 CCAATCGGAGAGGCAGAATGCACAAGCAGAGGATCAGCCCGATCCCCCTCTCCGTGCTGCTGATC
* *
21254804 CCGCTGCCACAACCCTCAATCCGGT-TGGG
131 CCACTGCCACAACCCTCAATCCGGTCT-GA
* *
21254833 GCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCA
1 GCTTAGACTA-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * *
21254897 GCCAATCGGAGAGGCAGAATGCACAAGCTAG-GGATCAGCCTGGTCCACCCTC-CCGTGCT-ATC
65 GCCAATCGGAGAGGCAGAATGCACAAGC-AGAGGATCAGCCCGATCC-CCCTCTCCGTGCTGCT-
* * *
21254959 GATCCTACTGCCGCAACCCTCGATCCGGTCTGA
127 GATCCCACTGCCACAACCCTCAATCCGGTCTGA
* *
21254992 TCTTAGACTGGGAATGAACTCCATATGC
1 GCTTAGACTAGGAATGAACTCCATATGC
21255020 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 63, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
158 89 0.33
159 176 0.65
160 7 0.03
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.19
Consensus pattern (159 bp):
GCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCAATCGGAGAGGCAGAATGCACAAGCAGAGGATCAGCCCGATCCCCCTCTCCGTGCTGCTGATC
CCACTGCCACAACCCTCAATCCGGTCTGA
Found at i:21255029 original size:26 final size:26
Alignment explanation
Indices: 21254993--21255044 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21254983 CCGGTCTGAT
21254993 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21255019 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21255045 TCTAACTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21255411 original size:26 final size:26
Alignment explanation
Indices: 21255361--21255411 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
21255351 CGGTCTGATC
**
21255361 TTAGACTGGGAATGAACTCTGTATGT
1 TTAGACTGGGAATGAACTCCATATGT
21255387 TTAGACAT-GGAATGAACTCCATATG
1 TTAGAC-TGGGAATGAACTCCATATG
21255412 CCTAAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:21255778 original size:159 final size:158
Alignment explanation
Indices: 21255387--21255885 Score: 460
Period size: 158 Copynumber: 3.2 Consensus size: 158
21255377 CTCTGTATGT
* * *
21255387 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTTTA-C
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGC-TCAGC
** * * * *
21255451 CGGCCAGAGAGGCAGAATGCAAAAGTCA-GGGATTGGCCCGGTCCCCCTTACGTGCTGTCGATCC
65 CGGCCAGAGAGGCA-AATGCGCAAGTCAGGGGATCGGCCCGGTCCTCCTTGCGTACTGTCGATCC
* *
21255515 TGCTACCGCAACCCTCGATCTGATCCAATC
129 CGCTACCACAACCCTCGATCTGATCCAATC
* * * * *
21255545 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGACGCTGAGC
1 TTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * *
21255609 CGACCGGAGAGGCATAATGCGCAAG-CAGGGGATCGGCCCGAG-CCTCCTCTGCGTACTGTCGGT
65 CGGCCAGAGAGGCA-AATGCGCAAGTCAGGGGATCGGCCCG-GTCCTCCT-TGCGTACTGTCGAT
* * * ***
21255672 CCCGCTGCCACAACTCTC-AGTCTGGTTGGGA-C
127 CCCGCTACCACAACCCTCGA-TCT-GATCCAATC
* * * *
21255704 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGTC
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
* * * * ** ***
21255769 GGTCAGAGAGGCAAATGAGCAAGTC-GGGGATCGGTCCGGTCCTCCTTGCGTGCTACCGATCTTA
66 GGCCAGAGAGGCAAATGCGCAAGTCAGGGGATCGGCCCGGTCCTCCTTGCGTACTGTCGATCCCG
* * *
21255833 CTGCCGCAACCCTCGATC-CAGTCCAATC
131 CTACCACAACCCTCGATCTGA-TCCAATC
*
21255861 TTAGAC-TAGGAATGAACTTCATATG
1 TTAGACAT-GGAATGAACTCCATATG
21255886 TTTAGACTGG
Statistics
Matches: 273, Mismatches: 54, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
156 3 0.01
157 53 0.19
158 117 0.43
159 96 0.35
160 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
GGCCAGAGAGGCAAATGCGCAAGTCAGGGGATCGGCCCGGTCCTCCTTGCGTACTGTCGATCCCG
CTACCACAACCCTCGATCTGATCCAATC
Found at i:21255903 original size:25 final size:26
Alignment explanation
Indices: 21255861--21255910 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
21255851 CAGTCCAATC
*
21255861 TTAGACTAGGAATGAACTTCATATGT
1 TTAGACTAGGAATGAACTCCATATGT
*
21255887 TTAGACT-GGGATGAACTCCATATG
1 TTAGACTAGGAATGAACTCCATATG
21255911 CCTATGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGT
Found at i:21256617 original size:26 final size:26
Alignment explanation
Indices: 21256581--21256633 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21256571 GGCTCAAACT
21256581 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
*
21256607 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
21256633 C
1 C
21256634 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:21256827 original size:26 final size:26
Alignment explanation
Indices: 21256798--21256850 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21256788 CCGGTTTGAT
*
21256798 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21256824 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21256850 C
1 C
21256851 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21258262 original size:26 final size:26
Alignment explanation
Indices: 21258226--21258278 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21258216 CTGATTTGAT
21258226 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21258252 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21258278 C
1 C
21258279 CTAATCAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21258614 original size:26 final size:26
Alignment explanation
Indices: 21258578--21258630 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21258568 TCGATCCAAT
*
21258578 CTTAGACTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21258604 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21258630 C
1 C
21258631 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21258783 original size:355 final size:352
Alignment explanation
Indices: 21258059--21258909 Score: 907
Period size: 355 Copynumber: 2.4 Consensus size: 352
21258049 CCAGTCCTGG
* * *
21258059 CTAGGGCTTAGACATGGAATG-ACTCCCTATGCCTAAGGCCAACCCACAAAACAGGTGGTGTGGG
1 CTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA-GCCAACCCACGAAACGGGT-GTGCGGG
* * * *
21258123 C-CT-AAGCCCAACCGGAGAGGCAGAATGCGTAAGTGGGGATCGGCGCCCGATCCCCCCTGGGTG
64 CGCTCAA--CCGACCGGAGAGGTAGAATGCGTAAGTGGGGATC-G-GCTCGATCCCCCCTGCGTG
** ***
21258186 CTGTCGATCCTAATGTCCGCAACCCTCAGTCTGATTTGATCTTAGACTGGGAATGAACTCCATAT
125 CTGTCGATCCTGCTGTCCGCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCATAT
*
21258251 GCTTAGACTGGGGATGAACTCCGTATGCCTAATCAACCCCACGAAATGAGCGTACAGCCGCAAAC
190 GCTTAGACTGGGGATGAACTCCGTATGCCTAATCAACCCCACGAAACGAGCGTACAGCCGCAAAC
* * * * * **
21258316 GATCGAAGAGGCATAACGACAAGTCGAGGATCAGCCTGGTCCCTCTCTGCGTGCTGTCGATCCCA
255 GACCGAAGAGGCATAACGACAAGTCGAGGATCAACCTGATCCCCCTCTGCATGCTACCGATCCCA
* *
21258381 CTACCAGTCCTACTACCACAATCATCGGTCTGA
320 CTACCAGTCCTACTACCACAACCATCGATCTGA
*
21258414 CTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCG
1 CTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCG
* * * *
21258479 CTCAATCGACCGGAGAGGTAGAATGCGCAAGTTGGGGATCGGCTCGGTCCCCCCTGCATGCTGTC
66 CTCAACCGACCGGAGAGGTAGAATGCGTAAG-TGGGGATCGGCTCGATCCCCCCTGCGTGCTGTC
* * * *
21258544 GATCCCGCTG-CCGCAACCCTCACT-TCGATCCAATCTTAGACTGGGAATGACCTCCGTATGCTT
130 GATCCTGCTGTCCGCAACCCTCAGTCT-GATCCAATCTTAGACTGGGAATGAACTCCATATGCTT
* * * * *
21258607 AGACTGGGGATGAACTCCGTATGCCTAAGTCAA-CCCATGAAACGAGTGTGCGGGAG-CTCAACC
194 AGACTGGGGATGAACTCCGTATGCCTAA-TCAACCCCACGAAACGAGCGTAC---AGCCGCAAAC
* * * *
21258670 GACCGGAGAGGCATTATGCATAAGTCGAGGATCAA-CTCGATCCCCCTCTGCATGCTACCGATCC
255 GACCGAAGAGGCATAACG-ACAAGTCGAGGATCAACCT-GATCCCCCTCTGCATGCTACCGATCC
** ** * * * *
21258734 TGCTGTC-GATCCTGCTGCCACAACCCTTGATGC-GA
318 CACTACCAG-TCCTACTACCACAACCATCGAT-CTGA
* * * * * * * *
21258769 CT-GGAGCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCTACGAAATGAGCGTACGGGT
1 CTAGG-GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGC
* * * *
21258833 GCTCAACCGACCGAAAAGGTAGAATGCGTAAGCCGGGGATCGG-TCTGATCCCCTCTGCGTGCTG
65 GCTCAACCGACCGGAGAGGTAGAATGCGTAAG-TGGGGATCGGCTC-GATCCCCCCTGCGTGCTG
21258897 TCGATCCTGCTGT
128 TCGATCCTGCTGT
21258910 TGGTCCTGCT
Statistics
Matches: 413, Mismatches: 67, Indels: 31
0.81 0.13 0.06
Matches are distributed among these distances:
351 1 0.00
352 87 0.21
353 31 0.08
354 56 0.14
355 220 0.53
356 18 0.04
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (352 bp):
CTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCG
CTCAACCGACCGGAGAGGTAGAATGCGTAAGTGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCG
ATCCTGCTGTCCGCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAG
ACTGGGGATGAACTCCGTATGCCTAATCAACCCCACGAAACGAGCGTACAGCCGCAAACGACCGA
AGAGGCATAACGACAAGTCGAGGATCAACCTGATCCCCCTCTGCATGCTACCGATCCCACTACCA
GTCCTACTACCACAACCATCGATCTGA
Found at i:21258885 original size:171 final size:170
Alignment explanation
Indices: 21258603--21258922 Score: 383
Period size: 171 Copynumber: 1.9 Consensus size: 170
21258593 ACCTCCGTAT
* * * * * *
21258603 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGAGCTCAA
1 GCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAGCTCAA
* * ** *
21258668 CCGACCGGAGAGGCATTATGCATAAGTCGAGGATCAACTCGATCCCCCTCTGCATGCTACCGATC
66 CCGACCGAAAAGGCAGAATGCATAAGCCGAGGATCAACTCGAT-CCCCTCTGCATGCTACCGATC
21258733 CTGCTGTCGATCCTGCTGCCACAACCCTTGATGCGACTGGA
130 CTGCTGTCGATCCTGCTGCCACAACCCTTGATGCGACTGGA
* * *
21258774 GCTTAGACAT-GGAATGAACTACGTATGCCTAAGCCAACCTACGAAATGAGCGTACGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAGCTCA
* * * ** * **
21258838 ACCGACCGAAAAGGTAGAATGCGTAAGCCGGGGATC-GGTCTGATCCCCTCTGCGTGCTGTCGAT
65 ACCGACCGAAAAGGCAGAATGCATAAGCCGAGGATCAACTC-GATCCCCTCTGCATGCTACCGAT
* *
21258902 CCTGCTGTTGGTCCTGCTGCC
129 CCTGCTGTCGATCCTGCTGCC
21258923 TATCCTGCTG
Statistics
Matches: 123, Mismatches: 24, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
170 38 0.31
171 84 0.68
172 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (170 bp):
GCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAGCTCAA
CCGACCGAAAAGGCAGAATGCATAAGCCGAGGATCAACTCGATCCCCTCTGCATGCTACCGATCC
TGCTGTCGATCCTGCTGCCACAACCCTTGATGCGACTGGA
Found at i:21258945 original size:24 final size:24
Alignment explanation
Indices: 21258900--21258946 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
21258890 CGTGCTGTCG
*
21258900 ATCCTGCTGTTGGTCCTGCTGCCT
1 ATCCTGCTGTTGGTCCTACTGCCT
*
21258924 ATCCTGCTGTTGGTCTTACTGCC
1 ATCCTGCTGTTGGTCCTACTGCC
21258947 GCAACCCTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.06, C:0.32, G:0.23, T:0.38
Consensus pattern (24 bp):
ATCCTGCTGTTGGTCCTACTGCCT
Found at i:21259350 original size:159 final size:155
Alignment explanation
Indices: 21258994--21259496 Score: 408
Period size: 158 Copynumber: 3.2 Consensus size: 155
21258984 AACTCCGTAT
* * * * *
21258994 GCTTAGAAGTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAG
1 GCTTA-AACTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * ** * *
21259059 CCGACCGGAAAGGCAGAATGCATAAGCCGAGGATCGA-CTCGATCCCCCCTGCGTGCTATCGATC
65 CCGATCGGAGAGGCAGAATGCGCAAG-CGAGGATCGATC-CGAT-CCTCCTGCGTGCTGTCGATC
* *
21259123 CTGCTACTGCAACCCTCGGTTTGGTCTGA
127 CTGCTACTGCAACCCTCAGTTCGGTCTGA
* * * * * *
21259152 TCTTAGACTGGGAATGAACTCTGC-ATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGA
1 GCTTAAACT-GGAATGAACTC-CCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * *
21259216 GCCGATCGGAGAGGCATAATACGCAAGCTGAGGATCGATCCGATCCGTCTCTGCGTGCTGTCGGT
64 GCCGATCGGAGAGGCAGAATGCGCAAGC-GAGGATCGATCCGATCC-TC-CTGCGTGCTGTCGAT
* *
21259281 -CT-C-ACTGTCACAACCTTCAGTTCGGT-TAGG
126 CCTGCTACTG---CAACCCTCAGTTCGGTCT-GA
* * * * *
21259311 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGGGTGCTCAG
1 GCTTAAAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * *
21259376 TCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGTCCGGTCCCTCCTGCGTGCTGCCGATCT
65 CCGATCGGAGAGGCAGAATGCGCAAGCGA-GGATCGATCCGAT-CCTCCTGCGTGCTGTCGATCC
* * * * *
21259441 TACTGCCGCAACCCT-TGATCCGGTCTGA
128 TGCTACTGCAACCCTCAG-TTCGGTCTGA
* * *
21259469 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAAACT-GGAATGAACTCCCTATGC
21259497 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 53, Indels: 40
0.75 0.15 0.11
Matches are distributed among these distances:
156 4 0.01
157 8 0.03
158 137 0.50
159 117 0.43
160 4 0.01
161 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (155 bp):
GCTTAAACTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCGAGGATCGATCCGATCCTCCTGCGTGCTGTCGATCCTGC
TACTGCAACCCTCAGTTCGGTCTGA
Found at i:21259499 original size:26 final size:26
Alignment explanation
Indices: 21259470--21259522 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21259460 CCGGTCTGAT
21259470 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21259496 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21259522 C
1 C
21259523 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21261421 original size:26 final size:26
Alignment explanation
Indices: 21261370--21261422 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21261360 GGCTCAAACT
**
21261370 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21261396 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21261422 C
1 C
21261423 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21261773 original size:159 final size:156
Alignment explanation
Indices: 21261395--21261921 Score: 483
Period size: 156 Copynumber: 3.3 Consensus size: 156
21261385 AACTCTGTAT
21261395 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGG-GCTCA
* * * * * *
21261459 GCCGGTCGGAGAGGCAGAATGCACAACCCGGGGATTGGCCCGATCCCCCCCTTCGTGCTATCGAT
65 GTCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATAGGCCCGATCCCCCCCTTCGTGCTACCGAT
* * * *
21261524 CCTACTGTCACCCTCGGTTTGGTCCGA
130 CCCACTGCCACCCTCAGTCTGGTCCGA
* * * * *
21261551 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTAGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGGGCTCA
* * * * *
21261615 GTCGACCGGAGAGGCAGAATGCCCAAGCCAGGGATAGGCTCGATCCCCCTCTAT-GTGCTACCGG
65 GTCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATAGGCCCGATCCCCCCCT-TCGTGCTACCGA
* * *
21261679 TCCCGCTGCCACAACCTTCAGTCTGG-CTGGG
129 TCCCACTGCCAC--CC-TCAGTCTGGTC-CGA
* ** * * *
21261710 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGGGTGCAGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGGGCTCAG
** * * * * * * *
21261775 TCGGCCGGAGAGGCAGAATGCGTAAGCCAGGGATTGACCCGGT-CCCTCCTGCGTGCTACTGATT
66 TCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATAGGCCCGATCCCCCCCTTCGTGCTACCGATC
*
21261839 CTACTGTCACAACCCTC-GATCTGGTCCGA
131 CCACTG-C-C-ACCCTCAG-TCTGGTCCGA
* * * * * * *
21261868 TCTTAAAC-TGGAAATGAACTTCGTATGCCTAAGTCAACCCACGGAACGAGCGTG
1 GCTTAGACATGG-AATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTG
21261922 TGGGCGCTCA
Statistics
Matches: 296, Mismatches: 60, Indels: 28
0.77 0.16 0.07
Matches are distributed among these distances:
155 1 0.00
156 114 0.39
157 7 0.02
158 69 0.23
159 101 0.34
160 2 0.01
161 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGGGCTCAG
TCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATAGGCCCGATCCCCCCCTTCGTGCTACCGATC
CCACTGCCACCCTCAGTCTGGTCCGA
Found at i:21262604 original size:26 final size:26
Alignment explanation
Indices: 21262566--21262616 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21262556 GGCTCAAAAT
*
21262566 CTTAGACTGGGAATGAACTCTGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
21262592 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
21262617 GCCTAAGCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:21263125 original size:26 final size:26
Alignment explanation
Indices: 21263096--21263148 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21263086 CCAGTCTGAT
*
21263096 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
21263122 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
21263148 C
1 C
21263149 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:21263506 original size:26 final size:26
Alignment explanation
Indices: 21263477--21263529 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21263467 CCGGTCTGAT
21263477 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
21263503 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21263529 C
1 C
21263530 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21265434 original size:26 final size:26
Alignment explanation
Indices: 21265398--21265450 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21265388 CTGATTCGAT
21265398 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21265424 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21265450 C
1 C
21265451 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21266033 original size:171 final size:170
Alignment explanation
Indices: 21265752--21266070 Score: 399
Period size: 171 Copynumber: 1.9 Consensus size: 170
21265742 TCGATCCAAT
* * * * * *
21265752 CTTAGACTGGGAATGACCTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGAGCTCAGC
1 CTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGAGCTCAAC
* * ** *
21265817 CGACCGGAGAGGCATTATGCATAAGTCGAGGATCAACTCGATCCCCCTCTGCATGCTACCGATCC
66 CGACCGAAAAGGCAGAATGCATAAGCCGAGGATCAACTCGAT-CCCCTCTGCATGCTACCGATCC
21265882 TGCTGTCGATCCTGCTGCCACAACCCTTGATGCGACTGGAG
130 TGCTGTCGATCCTGCTGCCACAACCCTTGATGCGACTGGAG
* *
21265923 CTTAGACAT-GGAATGAACTACGTATGCCTAAGCCAACCTACGAAATGAGCGTACGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTACGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGAGCTCAA
* * * ** * *
21265987 CCGACCGAAAAGGTAGAATGCGTAAGCCGGGGATC-GGTCTGATCCCCTCTGCGTGCTGCCGATC
65 CCGACCGAAAAGGCAGAATGCATAAGCCGAGGATCAACTC-GATCCCCTCTGCATGCTACCGATC
* *
21266051 CTGCTGTTGGTCCTGCTGCC
129 CTGCTGTCGATCCTGCTGCC
21266071 TATCCTGCTA
Statistics
Matches: 124, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
170 39 0.31
171 84 0.68
172 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (170 bp):
CTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGAGCTCAAC
CGACCGAAAAGGCAGAATGCATAAGCCGAGGATCAACTCGATCCCCTCTGCATGCTACCGATCCT
GCTGTCGATCCTGCTGCCACAACCCTTGATGCGACTGGAG
Found at i:21266085 original size:24 final size:24
Alignment explanation
Indices: 21266040--21266095 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
21266030 CCCCTCTGCG
**
21266040 TGCTGCCGATCCTGCTGTTGGTCC
1 TGCTGCCGATCCTGCTACTGGTCC
* *
21266064 TGCTGCCTATCCTGCTACTGGTCT
1 TGCTGCCGATCCTGCTACTGGTCC
*
21266088 TACTGCCG
1 TGCTGCCG
21266096 CAACCCTTGA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.07, C:0.34, G:0.25, T:0.34
Consensus pattern (24 bp):
TGCTGCCGATCCTGCTACTGGTCC
Found at i:21266659 original size:26 final size:26
Alignment explanation
Indices: 21266618--21266670 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21266608 CTGGTCTGAT
21266618 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
* * *
21266644 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
21266670 C
1 C
21266671 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:21268570 original size:26 final size:26
Alignment explanation
Indices: 21268519--21268571 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21268509 GGCTCAAACT
**
21268519 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21268545 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21268571 C
1 C
21268572 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21268922 original size:159 final size:156
Alignment explanation
Indices: 21268544--21269070 Score: 442
Period size: 156 Copynumber: 3.3 Consensus size: 156
21268534 AACTCTGTAT
*
21268544 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGG-GCTCA
* ** * *
21268608 GCCGGTCGGAGAGGCAGAATGCACAACCCTGGGATTGGCCCGATCCCCCCCTTCGTGCTATCGAT
65 GTCGACCGGAGAGGCAGAATGCACAACCCTGGGATCGGCCCGATCCCCCCCTTCGTGCTACCGAT
* * *
21268673 CCTACTGTCACCCTCAGTTTGGTCCGA
130 CCCACTGACACCCTCAGTCTGGTCCGA
* * * * *
21268700 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTAGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGGGCTCA
* * * * *
21268764 GTCGACCGGAGAGGCAGAATGCCCAA-GCTAGGGATCGGCTCGATCCCTCTCTAT-GTGCTACCG
65 GTCGACCGGAGAGGCAGAATGCACAACCCT-GGGATCGGCCCGATCCCCCCCT-TCGTGCTACCG
* * * *
21268827 GTCCCGCTGCCACAACCCTCAGTCTGG-CTGGG
128 ATCCCACTG--AC-ACCCTCAGTCTGGTC-CGA
* * * * *
21268859 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGGGTGCAGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGGGCTCAG
* * * * * * * * *
21268924 TC-AGCCGGAGAGGCAGAATACGCAAGCCGGGGATCGACCCGGT-CCCTCCTGCGTGCTACTGAT
66 TCGA-CCGGAGAGGCAGAATGCACAACCCTGGGATCGGCCCGATCCCCCCCTTCGTGCTACCGAT
* ** *
21268987 TCTGCTGTCACAACCCTC-GATCTGGTCTGA
130 CCCACTG--AC-ACCCTCAG-TCTGGTCCGA
* * * * * *
21269017 TCTTAAAC-TGGAAATGAACTTCGTATGCCTAAGTCAACCCACGGAACGAGCGTG
1 GCTTAGACATGG-AATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTG
21269071 TGGGCGCTCA
Statistics
Matches: 296, Mismatches: 60, Indels: 28
0.77 0.16 0.07
Matches are distributed among these distances:
155 3 0.01
156 107 0.36
157 7 0.02
158 77 0.26
159 100 0.34
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGGGCTCAG
TCGACCGGAGAGGCAGAATGCACAACCCTGGGATCGGCCCGATCCCCCCCTTCGTGCTACCGATC
CCACTGACACCCTCAGTCTGGTCCGA
Found at i:21269764 original size:26 final size:26
Alignment explanation
Indices: 21269713--21269765 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21269703 GGCTTAAAAT
*
21269713 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21269739 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21269765 C
1 C
21269766 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21270223 original size:26 final size:26
Alignment explanation
Indices: 21270194--21270272 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
21270184 CTGGTCCGAT
* *
21270194 CTTAGACTCGGAATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
*
21270220 CTTAGACTAGGGATGAACTCCGTAAG
1 CTTAGACTAGGGATGAACTCCGTATG
21270246 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
21270272 C
1 C
21270273 CTAAGTTAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:21271397 original size:159 final size:158
Alignment explanation
Indices: 21270968--21271384 Score: 446
Period size: 158 Copynumber: 2.6 Consensus size: 158
21270958 AACTCCGTAT
* * * *
21270968 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
* * *
21271033 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGCATCGACCTGGTCCCCCCCTACGTGCTATCAATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGGTCCCCCCCTACGTGCTATCAATC
** * **
21271098 CTGCTGTCCAACCCTCAGTTTGGTCCGA
131 CCACTGCCCAACCCTCAGTCCGGTCCGA
* * * * ** * * *
21271126 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACCAGCATACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCA
* * * * * *
21271190 GCC-AGCCGAAGAGGTATAATGCGCAAG-TCGGGGATCGACCTGGTCCCCCTCTACGTGCTGTCG
65 GCCGA-CCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGACCTGGTCCCCCCCTACGTGCTATCA
* * *
21271253 GTCCCACTGCCACAACCCTCAGTCCGG-CTGGG
128 ATCCCACTGCC-CAACCCTCAGTCCGGTC-CGA
* * *
21271285 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
**
21271350 CCGATTGGAGAGGCAGAATGCGCAAGCTGGGGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATC
21271385 AGCCCGATCC
Statistics
Matches: 204, Mismatches: 47, Indels: 15
0.77 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 108 0.53
159 91 0.45
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGGTCCCCCCCTACGTGCTATCAATC
CCACTGCCCAACCCTCAGTCCGGTCCGA
Found at i:21271480 original size:26 final size:26
Alignment explanation
Indices: 21271444--21271496 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21271434 CCGGTCTGAT
*
21271444 CTTAGGCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21271470 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21271496 C
1 C
21271497 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21271841 original size:26 final size:26
Alignment explanation
Indices: 21271812--21271864 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21271802 CCGATCTGAT
21271812 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21271838 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21271864 C
1 C
21271865 CTAAGTAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21272107 original size:355 final size:361
Alignment explanation
Indices: 21271262--21272093 Score: 966
Period size: 368 Copynumber: 2.3 Consensus size: 361
21271252 GGTCCCACTG
* **
21271262 CCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAT
* * * * * ** * * * * ** *
21271327 GAAATGGGCATGCGGGTGCTCAGCCGATTGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGA
66 CAAACGAGCGTGAGGACGCTCAACCGATCGGAGAGGCAGAATGCGAAAGCTGAGGATCAGCTTGG
* ** * * * * * * * * * *
21271392 TCCCCCCAACATGCTATCGATCTTACTGTCGTAACCCTCGATCCGGTCTGATCTTAGGCTGGGAA
131 TCCCCTCTGCGTACTGTCAATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAA
* *
21271457 TGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACGCACGAAACGAACGT
196 TGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAACGT
* * * *
21271522 GCGGACGCTCAGCCGACAGGAAAGGCCGGCTGGAGAGGCATAATGCGTAAGTCGGGGATCAGCCT
261 ACGGACGCTCAGCC-AC---AAA-G-C-GCTGGAAAGGCATAATGCGTAAGCCGAGGATCAGCCT
** * *
21271587 GACCCCTCTCTGTGTGCTGTCGATCCCGCTGCCAGTCCTGCTT
319 GACCCCTCTCTGCATGCTGTCGATCCCACTGCCAGTCCTGCTA
** * *
21271630 TTACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAATCCAACCCAT
1 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAT
* * * *
21271695 CAAATGAGCGTGCGGACGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCTGAGGATCAGCTTGG
66 CAAACGAGCGTGAGGACGCTCAACCGATCGGAGAGGCAGAATGCGAAAGCTGAGGATCAGCTTGG
21271760 TCCCCTCTGCGTACTGTCAATCCTGCTGCCGCAACCCTCTG-TCCGATCTGATCTTAGACTGGGA
131 TCCCCTCTGCGTACTGTCAATCCTGCTGCCGCAACCCTC-GATCCGATCTGATCTTAGACTGGGA
*
21271824 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTAAACCCACGAAAC-AAGC
195 ATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAA-C
* *
21271888 GTACGGGCGCTCAG-C-C-AA-C-C-GGAAAGGCATAATGCGTAAGCCGAGGATCAGCCTGGTCC
259 GTACGGACGCTCAGCCACAAAGCGCTGGAAAGGCATAATGCGTAAGCCGAGGATCAGCCT-GACC
* *
21271947 CC-CTCTGCATGCTGTCGATCTCACTGCCGGTCCTGCTA
323 CCTCTCTGCATGCTGTCGATCCCACTGCCAGTCCTGCTA
* *
21271985 CCACAACCCTGGGTCTGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCA-
1 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAT
* *
21272049 CAAAACGAGCGTGTATG-CGCTCAACCGATCGGAGAGGTAGAATGC
66 C-AAACGAGCGTG-AGGACGCTCAACCGATCGGAGAGGCAGAATGC
21272094 ATAAATCGAG
Statistics
Matches: 403, Mismatches: 56, Indels: 23
0.84 0.12 0.05
Matches are distributed among these distances:
354 1 0.00
355 155 0.38
356 7 0.02
358 1 0.00
361 2 0.00
365 1 0.00
367 3 0.01
368 232 0.58
369 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (361 bp):
CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAT
CAAACGAGCGTGAGGACGCTCAACCGATCGGAGAGGCAGAATGCGAAAGCTGAGGATCAGCTTGG
TCCCCTCTGCGTACTGTCAATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAA
TGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAACGT
ACGGACGCTCAGCCACAAAGCGCTGGAAAGGCATAATGCGTAAGCCGAGGATCAGCCTGACCCCT
CTCTGCATGCTGTCGATCCCACTGCCAGTCCTGCTA
Found at i:21272231 original size:26 final size:26
Alignment explanation
Indices: 21272179--21272232 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
21272169 CTGGTCTGAT
**
21272179 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCACATG
*
21272205 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCACATG
21272231 CT
1 CT
21272233 GAAGTCAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:21272393 original size:26 final size:26
Alignment explanation
Indices: 21272363--21272415 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21272353 CCGTTTCAAT
*
21272363 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATAAACTCCGTATG
*
21272389 CTTAGATTGGGTATAAACTCCGTATG
1 CTTAGATTGGGAATAAACTCCGTATG
21272415 C
1 C
21272416 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATAAACTCCGTATG
Found at i:21273121 original size:26 final size:26
Alignment explanation
Indices: 21273083--21273161 Score: 117
Period size: 26 Copynumber: 3.0 Consensus size: 26
21273073 GGCTCAAAAT
*
21273083 CTTAGAC-TGGGAATGCAA-TCTGTATG
1 CTTAGACAT-GGAATG-AACTCCGTATG
21273109 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21273135 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21273161 C
1 C
21273162 CTAAGCCAAC
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
25 2 0.04
26 47 0.94
27 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21273332 original size:25 final size:25
Alignment explanation
Indices: 21273296--21273343 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
21273286 TTCGATCTTA
21273296 GACTGGGAATGAACTCCATATGCTT
1 GACTGGGAATGAACTCCATATGCTT
* *
21273321 GACTGGGGATGAACTCCGTATGC
1 GACTGGGAATGAACTCCATATGC
21273344 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (25 bp):
GACTGGGAATGAACTCCATATGCTT
Found at i:21273787 original size:158 final size:158
Alignment explanation
Indices: 21273453--21273788 Score: 397
Period size: 158 Copynumber: 2.1 Consensus size: 158
21273443 CCATTGTCGG
* * * * * * *
21273453 TCTTACTGCCACAACACTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTCTGCCTAAGC
1 TCTTGCTGCCACAACCCTCGTTCCGACTGGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * * * *
21273518 CAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGTCAGAAAGGTAGAATGCACAAGCCGGGGAT
66 CAACCCACGAAACGAGCGTGCGGGCGCTCAGACAGTCAGAAAGGCAGAATGCACAAGCCGAGGAT
* *
21273583 CGGCCCGATCCCCCCTATGTGCTGTCGA
131 CGGCCCGATCCCCCCTACGTGCTATCGA
*
21273611 TCTTGCTGCCACATCCCTCGTTCCGACTGGAGCTTAGACATGGAATGAACTACC-TATGCCTAAG
1 TCTTGCTGCCACAACCCTCGTTCCGACTGGAGCTTAGACATGGAATGAACT-CCGTATGCCTAAG
* ** * * * * *
21273675 GCAACTGATGAAAC-AGGCGTGCGGGCGCTCATACAGTCGGAGAGGCAGAATGCGCAAGCCGAGG
65 CCAACCCACGAAACGA-GCGTGCGGGCGCTCAGACAGTCAGAAAGGCAGAATGCACAAGCCGAGG
* *
21273739 ATCGGCCCGATCCCCTCTGCGTGCTATCGA
129 ATCGGCCCGATCCCCCCTACGTGCTATCGA
* *
21273769 TCTTGCTGTCGCAACCCTCG
1 TCTTGCTGCCACAACCCTCG
21273789 ATCTGTAGAG
Statistics
Matches: 148, Mismatches: 28, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
157 1 0.01
158 145 0.98
159 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
TCTTGCTGCCACAACCCTCGTTCCGACTGGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCACGAAACGAGCGTGCGGGCGCTCAGACAGTCAGAAAGGCAGAATGCACAAGCCGAGGAT
CGGCCCGATCCCCCCTACGTGCTATCGA
Found at i:21274411 original size:26 final size:26
Alignment explanation
Indices: 21274382--21274434 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21274372 CTGGTTCGAT
*
21274382 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
21274408 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
21274434 C
1 C
21274435 CTAAGTCATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:21274537 original size:184 final size:184
Alignment explanation
Indices: 21274223--21274618 Score: 510
Period size: 184 Copynumber: 2.2 Consensus size: 184
21274213 TCCGGCTGGG
* *
21274223 GCTTAGACAT-GGAATGAACT-CGCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTC
1 GCTTAGAC-TGGGAATGAACTCCG-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC
* * * * *
21274286 ACCCGATCGGAGAGGCAAAATGTGCAAGCTGGGGTGCGGCCTGGTCCCCCCTGCATCCTATCGAT
64 ACCCGATCGGAGAGGCAAAATGCGCAAGCCGGGGTGCAGCCTGGTCCCCCCTACATCCTACCGAT
** **
21274351 CCTGCTACCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATAAACTCTGTAT
129 CCTGCTACCGCAACCCTCAATCTGGTTCGATCTTAGACTGGGAATAAACTCCATAT
* * * * *
21274407 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCGTGCGGGTGTTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAC
* * * * * *
21274472 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGAT-CAGTCTGGTCCCCCCTACGTGCTGCCGATC
66 CCGATCGGAGAGGCAAAATGCGCAAGCCGGGG-TGCAGCCTGGTCCCCCCTACATCCTACCGATC
* * *
21274536 CTGCTACCGCAACCCTCAATCTGGTTTGATCTTAGACTGGGAATGAATTCCATAT
130 CTGCTACCGCAACCCTCAATCTGGTTCGATCTTAGACTGGGAATAAACTCCATAT
*
21274591 GCTTAGACTGGGAATGAACTCCATATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
21274619 TTAGACTGGG
Statistics
Matches: 182, Mismatches: 27, Indels: 6
0.85 0.13 0.03
Matches are distributed among these distances:
183 1 0.01
184 178 0.98
185 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (184 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAC
CCGATCGGAGAGGCAAAATGCGCAAGCCGGGGTGCAGCCTGGTCCCCCCTACATCCTACCGATCC
TGCTACCGCAACCCTCAATCTGGTTCGATCTTAGACTGGGAATAAACTCCATAT
Found at i:21274602 original size:26 final size:26
Alignment explanation
Indices: 21274566--21274644 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
21274556 CTGGTTTGAT
*
21274566 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21274592 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21274618 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21274644 C
1 C
21274645 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21275351 original size:26 final size:26
Alignment explanation
Indices: 21275313--21275365 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21275303 CGCTCAAAAT
21275313 CTTAGACTAGGAATGAACACCATATG
1 CTTAGACTAGGAATGAACACCATATG
* *
21275339 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACACCATATG
21275365 C
1 C
21275366 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCATATG
Found at i:21275829 original size:26 final size:27
Alignment explanation
Indices: 21275800--21275853 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
21275790 CCAGTCTGAT
21275800 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGACTAGGGAATGAACTCCATATG
* *
21275826 CTTAGACTAGGGGATGAACTCCGTATG
1 CTTAGACTAGGGAATGAACTCCATATG
21275853 C
1 C
21275854 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (27 bp):
CTTAGACTAGGGAATGAACTCCATATG
Found at i:21276129 original size:170 final size:158
Alignment explanation
Indices: 21275957--21276266 Score: 374
Period size: 159 Copynumber: 2.0 Consensus size: 158
21275947 CTATCGATCC
* ** * * * *
21275957 TGCTATCGGTCCTGCTGCCACAACACTCGGTCTGGCTGGGGCTTAGACATGGAATGAACT-CGTA
1 TGCTATCGATCCTGCTGCTGCATCCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTACGTA
* * *
21276021 TGCCTAAGCCAACACACGAAATGAGCATGCGGGTGCTCAGCCGGCCGAAGAGGCAGAATGCGCAA
66 TGCCTAAGCCAAC-CACGAAATGAGCGTGCGGGTGCTCAACCGGCCGGAGAGGCAGAATGCGCAA
* *
21276086 GCCGAGGATCGGCTCGATCCCTCCT-TACG
130 GCCGAGGATCGGCCCGATCCC-CCTCTACA
* * *
21276115 TGCTGTCGATCCTGCTGCTGCATCCCTCGTTCCGACTGGGGCTTAGACATGGAATGAACTACCTA
1 TGCTATCGATCCTGCTGCTGCATCCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTACGTA
* * * * *
21276180 TGACTAAGCCAACCGACGAAACGGGCGTGCGGGTGCTCATA-CAGTCGGAGAGGCAGAATGCGCA
66 TGCCTAAGCCAACC-ACGAAATGAGCGTGCGGGTGCTCA-ACCGGCCGGAGAGGCAGAATGCGCA
*
21276244 AGTCGAGGATCGGCCCGATCCCC
129 AGCCGAGGATCGGCCCGATCCCC
21276267 TCTGCGTGCT
Statistics
Matches: 129, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
158 53 0.41
159 76 0.59
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
TGCTATCGATCCTGCTGCTGCATCCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTACGTA
TGCCTAAGCCAACCACGAAATGAGCGTGCGGGTGCTCAACCGGCCGGAGAGGCAGAATGCGCAAG
CCGAGGATCGGCCCGATCCCCCTCTACA
Found at i:21276345 original size:26 final size:26
Alignment explanation
Indices: 21276316--21276366 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21276306 GGTCTAATCT
*
21276316 TAGATTGGGAATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCTGTATGCC
*
21276342 TAGACTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGTATGC
21276367 TTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCC
Found at i:21277596 original size:26 final size:26
Alignment explanation
Indices: 21277560--21277612 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21277550 CCGGTCTGAT
21277560 CTTAGACATGGAATGAACCCCATATG
1 CTTAGACATGGAATGAACCCCATATG
*
21277586 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACCCCATATG
21277612 C
1 C
21277613 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACCCCATATG
Found at i:21278076 original size:157 final size:155
Alignment explanation
Indices: 21277586--21278085 Score: 445
Period size: 159 Copynumber: 3.2 Consensus size: 155
21277576 ACCCCATATG
*
21277586 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAACAAGG-GTGCGGGCGCTCA
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCAC--AAA-AAGGCGTGCGGGCGCTCA
* * * * * *
21277650 GCCTGTCGGAGAGGCAAAATGCATAAGTCGGGGATCGGCCTGATCCCCCCTACGTGCTGTCGATC
63 GCCGGTCAGAGAGGCAAAATGCACAAGT-GGGGATCGGCCCGATCCCCTCTACATGCTGTCGATC
* *
21277715 CTGCTATCGCAACCCTTGGTCTGGCCCGAT
127 CTGCTGTCGCAACCCTTGGTCCGG-CCGAT
* * ** * * *
21277745 CTTAGAC-TGGGAATAAACTCCATATGCATAAG-TCAATGCACGAAACGAGCGTGCGGGCGCTGA
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCT-AACCCACAAAAAG-GCGTGCGGGCGCTCA
* * * * * * * * *
21277808 GCTGG-CCGAAAAGGCATAATGCGCAAGTTGGGGATCGGCCCGGTCCCCCTCTGCATGCTGCCGG
63 GCCGGTCAG-AGAGGCAAAATGCACAAG-TGGGGATCGGCCCGAT-CCCCTCTACATGCTGTCGA
* * * * **
21277872 TCCCGCTGCCACAACCCTTGGTCCGGCTAGGG
125 TCCTGCTGTCGCAACCCTTGGTCCGGC-CGAT
* * * **
21277904 CTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCATAAAATAGGCGTGAGGGCATTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCACAAAA-AGGCGTGCGGGCGCTCAGC
* *
21277969 CGGTCAGAGAGGCAGAATGCACAAGCTGGGGATCAGCCCGAT-CCCTCTACATGCTGTCGATCCT
65 CGGTCAGAGAGGCAAAATGCACAAG-TGGGGATCGGCCCGATCCCCTCTACATGCTGTCGATCCT
* * *
21278033 ACTGTTGCAACCCTCGGTCCGGACCGAT
129 GCTGTCGCAACCCTTGGTCCGG-CCGAT
21278061 CTTAGAC-TGGCAATGAACTCCATAT
1 CTTAGACATGG-AATGAACTCCATAT
21278086 CCTTAGATTG
Statistics
Matches: 264, Mismatches: 63, Indels: 30
0.74 0.18 0.08
Matches are distributed among these distances:
156 5 0.02
157 61 0.23
158 45 0.17
159 148 0.56
160 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCACAAAAAGGCGTGCGGGCGCTCAGCC
GGTCAGAGAGGCAAAATGCACAAGTGGGGATCGGCCCGATCCCCTCTACATGCTGTCGATCCTGC
TGTCGCAACCCTTGGTCCGGCCGAT
Found at i:21278841 original size:159 final size:159
Alignment explanation
Indices: 21278601--21278905 Score: 342
Period size: 159 Copynumber: 1.9 Consensus size: 159
21278591 ATCTTAGTCT
* * * * *
21278601 GGGAATGAACTCCGTATGCATAAGTCAACCGACAAAACGAACGTGCGGGCACTGAGCCGATCGAA
1 GGGAATGAACTCCCTACGCATAAGCCAACCGACAAAACGAACGTGCGGGCACTCAGCCGACCGAA
* * * ** * * * *
21278666 GAGGCATAATGTGCAAGTTGGGGATCGGCCCGGTCCACCTCTATGTGCTGTAGGTCCCACTGCCA
66 GAGGCAGAACGCGCAAGCAGGGGATCAGCCCGGTCC-CCCCTACGTGCTGTAGATCCCACTGCCA
21278731 CAACCCTCGATCCGGTTGGGGCAGAGACAA
130 CAACCCTCGATCCGGTTGGGGCAGAGACAA
* * * ** * *
21278761 GGGAATGAACTCCCTACG-TTAAGCCAACCTACGAAACGGGCGTGCGGGCGCTCAGCCGACCGGA
1 GGGAATGAACTCCCTACGCATAAGCCAACCGACAAAACGAACGTGCGGGCACTCAGCCGACCGAA
* * * ** **
21278825 GAGGCAGAACGCGCAAGCAGGGGATCAGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGT
66 GAGGCAGAACGCGCAAGCAGGGGATCAGCCCGGTCCCCCCTACGTGCTGTAGATCCCACTGCCAC
21278890 AACCCTCGATCCGGTT
131 AACCCTCGATCCGGTT
21278906 CGATCTTAGA
Statistics
Matches: 117, Mismatches: 28, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
158 36 0.31
159 65 0.56
160 16 0.14
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.17
Consensus pattern (159 bp):
GGGAATGAACTCCCTACGCATAAGCCAACCGACAAAACGAACGTGCGGGCACTCAGCCGACCGAA
GAGGCAGAACGCGCAAGCAGGGGATCAGCCCGGTCCCCCCTACGTGCTGTAGATCCCACTGCCAC
AACCCTCGATCCGGTTGGGGCAGAGACAA
Found at i:21278939 original size:26 final size:26
Alignment explanation
Indices: 21278910--21278960 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21278900 CCGGTTCGAT
21278910 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
* *
21278936 CTTAGACTGGGGATGAACTTCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
21278961 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:21279327 original size:26 final size:26
Alignment explanation
Indices: 21279276--21279328 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21279266 CCGGTCTGAT
* **
21279276 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCATATG
21279302 CTTAGACAGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
21279328 C
1 C
21279329 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Done.