Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 203 of 402
Found at i:21279788 original size:158 final size:155
Alignment explanation
Indices: 21279302--21279801 Score: 429
Period size: 158 Copynumber: 3.2 Consensus size: 155
21279292 ACTCTGTATG
* * *
21279302 CTTAGACAGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC-AG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAC
* * * *
21279366 CAGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATCC
66 CA-G-CCGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGAT-CCCTCTGCATGCTGTCGATCC
* * *** * *
21279431 TACTACTGTAACCCTCGGT-TCGATCTAAT
127 TGCTGCCACAACCCTCGGTCTAGATC-GAT
* * * * * * * *
21279460 CTTGGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCTTCCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAC
* * *
21279525 CAACCGA-AGGGCATAATGCGCAAGCCGAGG-TTGGCCC-AGTCCCCCTCTGTC-TGCTGTCGAT
66 CAGCCGAGA-GGCAGAATGCGCAAGCCG-GGATCGGCCCGA-T--CCCTCTG-CATGCTGTCGAT
* * * * **
21279586 CCCGCTGCCACAACCCTCGGTCCAGCTGGGG
125 CCTGCTGCCACAACCCTCGGTCTAGATCGAT
* * * * *
21279617 CTTAGA-TATGGAATGAATTCCCTATGACTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAA
1 CTTAGACT-GGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * * **
21279681 TCAGCCAGAGAGGCAGAATGCGCAAGCCGTGGATCGTCCCGATCCCTAATGCACGCTACCGATCC
65 CCAGCC-GAGAGGCAGAATGCGCAAGCCG-GGATCGGCCCGATCCCT-CTGCATGCTGTCGATCC
*
21279746 TGCTGCCACAACCCTCGGTCTGGATCGAT
127 TGCTGCCACAACCCTCGGTCTAGATCGAT
21279775 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCATATGC
21279802 TTAGATTGGG
Statistics
Matches: 263, Mismatches: 64, Indels: 30
0.74 0.18 0.08
Matches are distributed among these distances:
156 10 0.04
157 111 0.42
158 131 0.50
159 10 0.04
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (155 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAC
CAGCCGAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGATCCCTCTGCATGCTGTCGATCCTGCT
GCCACAACCCTCGGTCTAGATCGAT
Found at i:21280190 original size:26 final size:26
Alignment explanation
Indices: 21280152--21280204 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21280142 CCAGTTTGAT
*
21280152 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21280178 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21280204 C
1 C
21280205 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21280194 original size:876 final size:857
Alignment explanation
Indices: 21278508--21281215 Score: 2940
Period size: 876 Copynumber: 3.1 Consensus size: 857
21278498 GCCAACCTAC
* * * * * * *
21278508 GAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGTTGTCAATCTTGCTGTCGC
1 GAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTCTCGC
* * * * *
21278573 AACCCTCGGTCCGATCCGATCTTAGTCTGGGAATGAACTCCGTATGCATAAGTCAACCGACAAAA
66 AACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * *
21278638 CGAACGTGCGGGCACTGAGCCGATCGAAGAGGCATAATGTGCAAGTTGGGGATCGGCCCGGTCCA
131 CGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATGTGCAAGTCGAGG-TTGGCCC-GTCCC
* * * * * * ** *
21278703 CCTCTATGTGCTGTAGGTCCCACTGCCACAACCCTCGATCCGGTTGGGGCAGAGACAAGGGAATG
194 CCTCTGTCTGCTGTCGATCCCACTGCCACAACCCTCGGTCC-GCTGGGGCTTAGA-AATGGAATG
* * * ** *
21278768 AACTCCCTACGTTAAGCCAACCTACGAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGA
257 AATTCCCTACGCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAATCGACCAGAGAGGCAGA
* * * * *
21278833 ACGCGCAAGCAGGGGATCAG-CCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGTAACCCTC
322 ATGCGCAAGC-CGGGATCAGTCCTGGTCCCCCATGCGTGCTGCCGATCCTGCTGCC-CAACCCTC
* * *
21278897 GATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTGGGGATGAACTTCGTATG
385 GGTCCGG-TCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTCGTATG
* * * * *
21278962 CCTAAGTCAACCCACGAAACGAGCGTGCGGACGTT-C--AGCCTGCTAGAGAGGCATAATTCGTA
449 CCTAAGTCAACCCACGAAACGAGCGTGAGGGCGTTGCTAAGCCGGC-CGAGAGGCATAATGCGTA
* ** *
21279024 AGCTGGGGAAT-AGCCCGGTCCCCCT-TGGCATGCTGTCGATCCTACTGTCGGTCCTGCTGCACA
513 AGCTGGGG-ATCAGCCCGATCCCCCTCT-GCATGCTGTCGATCCCGCTGCCGGTCCTGC--CACA
* *
21279087 ACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAAC
574 ACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAAT
* * * * *
21279152 GAGCGTGCGGGCACTCAG-CTAGCCTGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCC
639 GAGCGTGCGGGCGCTCAGCCGA-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCC
* * * * *
21279216 CCCTATGTGCTGTCAATCTTGCTACTGGTCCTGCTGCTGCAAACCTCGGTCCGGTCTGATCTTAG
703 CCCTGTGTGCTGCCAATCCTGCT--TGGTCCTGCTGCTGCAACCCTCGGTCC-GTTTGATCTTAG
*
21279281 ACTGGGAATGAAC-TCTGTATGCTTAGACAGGGAATGAACTCCATATGCCTAAGCCAACCCACGA
765 ACTGGGAATGAACTTC-GTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGA
*
21279345 AACGAGCGTGCGGGCGCTCAGCAGGTCGGA
829 AACGAGCGTGCGGGCGCTCAGCCGG-CGGA
* * *
21279375 GAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATCCTACTACT-G
1 GAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCT-CTCG
* ** *
21279439 TAACCCTCGGTTCGATCTAATCTTGGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
65 CAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * * *
21279504 ATGAGCTTCCGGGCACTGAGCCAACCGAAG-GGCATAATGCGCAAGCCGAGGTTGGCCCAGTCCC
130 ACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATGTGCAAGTCGAGGTTGGCCC-GTCCC
* *
21279568 CCTCTGTCTGCTGTCGATCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGATATGGAATGA
194 CCTCTGTCTGCTGTCGATCCCACTGCCACAACCCTCGGTCC-GCTGGGGCTTAGAAATGGAATGA
* *
21279633 ATTCCCTATGACTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAATC-AGCCAGAGAGGCAG
258 ATTCCCTACG-CTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAATCGA-CCAGAGAGGCAG
* * ** ** *
21279697 AATGCGCAAGCCGTGGATC-GTCCCGATCCCTAATGCACGCTACCGATCCTGCTGCCACAACCCT
321 AATGCGCAAGCCG-GGATCAGTCCTGGTCCCCCATGCGTGCTGCCGATCCTGCTGCC-CAACCCT
* *
21279761 CGGTCTGGATCGATCTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGGATGAACTTCGTAT
384 CGGTCCGG-TCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTCGTAT
*
21279826 GCCTAAGTCAACCCACGAAACGAGCGTGGGGGCGCTTAGCCGACTGGAGAGGCCGGCCGGAGAGG
448 GCCTAAGTCAACCCACGAAACGAGCGTGAGGGCG-TT----G-CT--A-A-GCCGGCC-GAGAGG
* * * * *
21279891 CATAATGCGTAAGCCGGGGATCAGCCCGAACCCCCTCTGCGTGCTGTCGGTCCCGCTACCGGTCC
502 CATAATGCGTAAGCTGGGGATCAGCCCGATCCCCCTCTGCATGCTGTCGATCCCGCTGCCGGTCC
* *
21279956 TGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCC
567 TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCC
* * * * *
21280021 CCAAAATGAGCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATTGGCTC
632 ACAAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTC
*
21280086 GGTCCCCCCTGTGTGCTACCAATCCTGCTGTTGGTCCTGCTGCTGCAACCCTCGGTCCAGTTTGA
697 GGTCCCCCCTGTGTGCTGCCAATCCTGC--TTGGTCCTGCTGCTGCAACCCTCGGTCC-GTTTGA
*
21280151 TCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
759 TCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
* * * *
21280216 CATGAAA-GAAACGTGTGGGCGCTCAACCGGCTGGA
824 CACGAAACG-AGCGTGCGGGCGCTCAGCCGGC-GGA
* * * * *
21280251 GAGGCAGAATGCGCAAGCCAGGGATTGACCCGATCCCCCCTGCGTGTTGTCGATCCTGCTAC-CA
1 GAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCT-CTCG
* * * ** *
21280315 CAACCCTC-GTTCTGGTCCGATCTTAGTCTAGGAATGAACTTTGTATGAAC-AAGTCAACCCACG
65 CAACCCTCGGTTC-GATCCGATCTTAGACTGGGAATGAACTCCGTATG-CCTAAGTCAACCCACG
* * *
21280378 AAACGAGCGTGCGGGCCCTGAGCCGGCCGAAGAGGCATAATGTGCAAGTC-AGGGATGGCCCGAT
128 AAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATGTGCAAGTCGA-GGTTGGCCCG-T
* * * *
21280442 CCCCCTCTG-CGTGTTG-CAAGTCCCACTGCCACAACCCTCGGTCCGTCTAGGGCTTAGACATGG
191 CCCCCTCTGTC-TGCTGTCGA-TCCCACTGCCACAACCCTCGGTCCG-CTGGGGCTTAGAAATGG
* * * * *
21280505 AATCAACTT-CCTACGCCTAAGCCAACCCACG-AACGGGTGTGCGGGTGCTCAGTCGATCAGAGA
253 AATGAA-TTCCCTACG-CTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAATCGACCAGAGA
* * * *
21280568 GGCAGAATGCGCAAGCCAGGGACCGGT-CTGGTCCCCCTTGCGTGCTGCCGATCCTACTGCCCGT
316 GGCAGAATGCGCAAGCC-GGGATCAGTCCTGGTCCCCCATGCGTGCTGCCGATCCTGCTGCCC--
* *
21280632 AAGCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGGATGAACT
378 AACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACT
* * * * *
21280697 CCGTATGGCTAAGTCAACCCATGAAACGAGTGT-ACGG-G-TGCTCAA-CCGGCCGAGAGGCATA
442 TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGTTGCT-AAGCCGGCCGAGAGGCATA
* ** * * *
21280758 ATGCGCAAGCTGGGGATCAGCCCGATCCCCCTCTGCATGCTACCGATCTCGCTGCCGCTCTTGCA
506 ATGCGTAAGCTGGGGATCAGCCCGATCCCCCTCTGCATGCTGTCGATCCCGCTGCCGGTC---CT
* * *
21280823 GCCACAACCCTCGGTCCGGCTGGGGCTTAGAAATGGCATGAACTCCGTATGCCTAAGCCAACCCA
568 GCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCA
* * * ** * *
21280888 CGAAATGAGTGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATATGCAAGCCGAGGATCGGCTCA
633 CAAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCG
* * *
21280953 GTCCCCCTTGCGTGCTGCCGAT-C--C---G--CTGC--C-GCAACCCTCGGTCCGATCTT-ATC
698 GTCCCCCCTGTGTGCTGCCAATCCTGCTTGGTCCTGCTGCTGCAACCCTCGGTCCG-T-TTGATC
* *
21281006 TTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCCTATTCCTAAGCCAACCCA
761 TTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCA
* * **
21281071 CGAAGTCG-GCGTGCGGGTGCTCAGCCGGCCAAA
826 CGAA-ACGAGCGTGCGGGCGCTCAGCCGG-CGGA
* ** * * * * *
21281104 GAGGCAAAATGCGTAAATCGGGGATCAGCCCGATCCCCCCTGCGTGCTGCCGATCCTGCTGTCGT
1 GAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTCTCGC
* * *
21281169 AACCCTTGG-TCTAGTCCGATCTTAGACTGGGAATGAACTCGGTATGC
66 AACCCTCGGTTCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGC
21281216 TTAGACTGGG
Statistics
Matches: 1552, Mismatches: 235, Indels: 123
0.81 0.12 0.06
Matches are distributed among these distances:
852 1 0.00
853 188 0.12
854 5 0.00
855 1 0.00
856 4 0.00
858 1 0.00
863 61 0.04
864 25 0.02
865 239 0.15
866 152 0.10
867 135 0.09
868 3 0.00
869 1 0.00
872 1 0.00
873 1 0.00
875 8 0.01
876 459 0.30
877 199 0.13
878 67 0.04
879 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (857 bp):
GAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTCTCGC
AACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATGTGCAAGTCGAGGTTGGCCCGTCCCCC
TCTGTCTGCTGTCGATCCCACTGCCACAACCCTCGGTCCGCTGGGGCTTAGAAATGGAATGAATT
CCCTACGCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAATCGACCAGAGAGGCAGAATGC
GCAAGCCGGGATCAGTCCTGGTCCCCCATGCGTGCTGCCGATCCTGCTGCCCAACCCTCGGTCCG
GTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGT
CAACCCACGAAACGAGCGTGAGGGCGTTGCTAAGCCGGCCGAGAGGCATAATGCGTAAGCTGGGG
ATCAGCCCGATCCCCCTCTGCATGCTGTCGATCCCGCTGCCGGTCCTGCCACAACCCTCGGTCCG
GCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGC
GCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGTGTGCTGC
CAATCCTGCTTGGTCCTGCTGCTGCAACCCTCGGTCCGTTTGATCTTAGACTGGGAATGAACTTC
GTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC
TCAGCCGGCGGA
Found at i:21280507 original size:158 final size:158
Alignment explanation
Indices: 21280177--21280537 Score: 356
Period size: 158 Copynumber: 2.3 Consensus size: 158
21280167 AACTTCGTAT
* * * * *
21280177 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGAAACGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTTCGTATGACTAAGCCAACCCACGAAAGAAACGTGCGGGCCCTCAA
* * *
21280242 CCGGCTGGAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGATCCCCCCTGCGTGTTGTCGATCC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGATCCCCCCTGCGTGTTGTCAATCC
** * * *
21280307 TGCTACCACAACCCTCGTTCTGGTCCGA
131 CACTACCACAACCCTCGGTCTCGTCAGA
* * * * *
21280335 TCTTAGTC-TAGGAATGAACTTTGTATGAAC-AAGTCAACCCACGAAACG-AGCGTGCGGGCCCT
1 GCTTAGACAT-GGAATGAACTTCGTATG-ACTAAGCCAACCCACGAAA-GAAACGTGCGGGCCCT
* * * * * *
21280397 GAGCCGGCCGAAGAGGCATAATGTGCAAGTCAGGGA-TGGCCCGATCCCCCTCTGCGTGTTG-CA
63 CAACCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGATCCCCC-CTGCGTGTTGTCA
* *
21280460 AGTCCCACTGCCACAACCCTCGGTC-CGTCTAGG
127 A-TCCCACTACCACAACCCTCGGTCTCGTC-AGA
* * * *
21280493 GCTTAGACATGGAATCAACTTCCTACGCCTAAGCCAACCCACGAA
1 GCTTAGACATGGAATGAACTTCGTATGACTAAGCCAACCCACGAA
21280538 CGGGTGTGCG
Statistics
Matches: 161, Mismatches: 34, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
157 20 0.12
158 138 0.86
159 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTTCGTATGACTAAGCCAACCCACGAAAGAAACGTGCGGGCCCTCAA
CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGATCCCCCCTGCGTGTTGTCAATCC
CACTACCACAACCCTCGGTCTCGTCAGA
Found at i:21280688 original size:26 final size:26
Alignment explanation
Indices: 21280652--21280703 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21280642 CCGGTCTGAT
*
21280652 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21280678 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21280704 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21281137 original size:354 final size:353
Alignment explanation
Indices: 21280469--21281158 Score: 901
Period size: 353 Copynumber: 2.0 Consensus size: 353
21280459 AAGTCCCACT
* *
21280469 GCCACAACCCTCGGTCCGTCTAGGGCTTAGACATGGAATCAACTTCCTACGCCTAAGCCAACCCA
1 GCCACAACCCTCGGTCCGGCTAGGGCTTAGAAATGGAATCAACTTCCTACGCCTAAGCCAACCCA
* * * * *
21280534 CGAACGGGTGTGCGGGTGCTCAGTCGATCAGAGAGGCAGAATGCGCAAGCCAGGGACCGGTCTGG
66 CGAACGAGTGTGCGGGTGCTCAGCCGACCAGAGAGGCAGAATACGCAAGCCAGGGACCGGTCTAG
* * *
21280599 TCCCCCTTGCGTGCTGCCGATCCTACTGCCCGTAAGCCTCGGTCCGGTCTGATCTTAGACTGGGA
131 TCCCCCTTGCGTGCTGCCGATCCTACTGCCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGA
* * * * * * *
21280664 ATGAACTCCTTATGCTTAGACTGGGGATGAACTCCGTATGGCTAAGTCAACCCATGAAACGAGTG
196 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCG
* * *
21280729 TACGGGTGCTCAACCGGCCGAGAGGCATAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTCTGC
261 TACGGGTGCTCAACCGGCCAAGAGGCAAAATGCGAAAGCTGGGGATCAGCCCGATCCCCC-CTGC
21280794 ATGCTACCGATCTCGCTGCCGCTCTTGCA
325 ATGCTACCGATCTCGCTGCCGCTCTTGCA
* * * *
21280823 GCCACAACCCTCGGTCCGGCTGGGGCTTAGAAATGGCATGAAC-TCCGTATGCCTAAGCCAACCC
1 GCCACAACCCTCGGTCCGGCTAGGGCTTAGAAATGGAATCAACTTCC-TACGCCTAAGCCAACCC
* * * *
21280887 ACGAAATGAGTGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATATGCAAGCC-GAGGATCGG-C
65 ACG-AACGAGTGTGCGGGTGCTCAGCCGACCAGAGAGGCAGAATACGCAAGCCAG-GGACCGGTC
* *
21280950 TCAGTCCCCCTTGCGTGCTGCCGATCC-GCTG-CCGCAACCCTCGGTCCGATCTTATCTTAGACT
128 T-AGTCCCCCTTGCGTGCTGCCGATCCTACTGCCCGCAACCCTCGGTCCGATCTGATCTTAGACT
* * *
21281013 GGGAATGAACTTCGTATGCTTAGACAT-GGAATGAACTCCCTATTCCTAAGCCAACCCACGAAGT
192 GGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA-A
* * *
21281077 CG-GCGTGCGGGTGCTCAGCCGGCCAAAGAGGCAAAATGCGTAAATC-GGGGATCAGCCCGATCC
255 CGAGCGTACGGGTGCTCAACCGGCC-AAGAGGCAAAATGCG-AAAGCTGGGGATCAGCCCGATCC
* *
21281140 CCCCTGCGTGCTGCCGATC
318 CCCCTGCATGCTACCGATC
21281159 CTGCTGTCGT
Statistics
Matches: 290, Mismatches: 38, Indels: 17
0.84 0.11 0.05
Matches are distributed among these distances:
353 116 0.40
354 99 0.34
355 75 0.26
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.20
Consensus pattern (353 bp):
GCCACAACCCTCGGTCCGGCTAGGGCTTAGAAATGGAATCAACTTCCTACGCCTAAGCCAACCCA
CGAACGAGTGTGCGGGTGCTCAGCCGACCAGAGAGGCAGAATACGCAAGCCAGGGACCGGTCTAG
TCCCCCTTGCGTGCTGCCGATCCTACTGCCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGA
ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCG
TACGGGTGCTCAACCGGCCAAGAGGCAAAATGCGAAAGCTGGGGATCAGCCCGATCCCCCCTGCA
TGCTACCGATCTCGCTGCCGCTCTTGCA
Found at i:21281155 original size:183 final size:184
Alignment explanation
Indices: 21280847--21281294 Score: 509
Period size: 183 Copynumber: 2.4 Consensus size: 184
21280837 TCCGGCTGGG
* *
21280847 GCTTAGAAATGGCATGAACTCCGTATGCCTAAGCCAACCCACGAAAT-GAGTGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AATCGAGTGTGCGGGTGCTCA
** * * * *
21280911 GCCGACCGGAGAGGCAGAATATGCAAGCCGAGGATCGGCTCAGTCCCCCTTGCGTGCTGCCGATC
65 GCCGACCAAAGAGGCAGAATATGCAAACCGAGGATCAGCCCAGTCCCCCCTGCGTGCTGCCGATC
**
21280976 C-GCTGCCGCAACCCTCGGTCCGA-TCTTATCTTAGACTGGGAATGAACTTC-GTAT
130 CTGCTGCCGCAACCCTCGGT-CGAGTCCGATCTTAGACTGGGAATGAAC-TCGGTAT
* * *
21281030 GCTTAGACATGGAATGAACTCCCTATTCCTAAGCCAACCCACGAAGTCG-GCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA-TCGAGTGTGCGGGTGCTCA
* * *
21281094 GCCGGCCAAAGAGGCA-AA-ATGCGTAAATCGGGGATCAGCCC-GATCCCCCCTGCGTGCTGCCG
65 GCCGACCAAAGAGGCAGAATATGC--AAACCGAGGATCAGCCCAG-TCCCCCCTGCGTGCTGCCG
* * * *
21281156 ATCCTGCTGTCGTAACCCTTGGTCTAGTCCGATCTTAGACTGGGAATGAACTCGGTAT
127 ATCCTGCTGCCGCAACCCTCGGTCGAGTCCGATCTTAGACTGGGAATGAACTCGGTAT
* ** * * *
21281214 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTGAGCCCACGAAACGAGTGTGCGGGGGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAATCGAGTGTGCGGGTGCTCA
* *
21281278 GCCGACTAAAGGGGCAG
65 GCCGACCAAAGAGGCAG
21281295 GATGCGCAAG
Statistics
Matches: 222, Mismatches: 32, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
181 4 0.02
182 5 0.02
183 108 0.49
184 105 0.47
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATCGAGTGTGCGGGTGCTCAG
CCGACCAAAGAGGCAGAATATGCAAACCGAGGATCAGCCCAGTCCCCCCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTCGGTCGAGTCCGATCTTAGACTGGGAATGAACTCGGTAT
Found at i:21281225 original size:26 final size:26
Alignment explanation
Indices: 21281189--21281241 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21281179 CTAGTCCGAT
*
21281189 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21281215 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21281241 C
1 C
21281242 CTAAGTGAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21281312 original size:184 final size:183
Alignment explanation
Indices: 21280847--21281313 Score: 539
Period size: 184 Copynumber: 2.5 Consensus size: 183
21280837 TCCGGCTGGG
* * *
21280847 GCTTAGAAATGGCATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAG
** ** * * * *
21280912 CCGACCGGAGAGGCAGAATATGCAAGCCGAGGATCGGCTCAGTCCCCCTTGCGTGCTGCCGATCC
66 CCGACCAAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCCTGCGTGCTGCCGATCC
* **
21280977 GCTGCCGCAACCCTCGGTCCGATCTTATCTTAGACTGGGAATGAACTTCGTAT
131 GCTGCCGCAACCCTCGGTCAGATCCGATCTTAGACTGGGAATGAACTTCGTAT
* * * *
21281030 GCTTAGACATGGAATGAACTCCCTATTCCTAAGCCAACCCACGAAGTCG-GCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA-ACGAGTGTGCGGGTGCTCA
* * * **
21281094 GCCGGCCAAAGAGGCAAAATGCGTAAATCGGGGATCAGCCC-GATCCCCCCTGCGTGCTGCCGAT
65 GCCGACCAAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAG-TCCCCCCTGCGTGCTGCCGAT
* * *
21281158 CCTGCTGTCGTAACCCTTGGTCTAG-TCCGATCTTAGACTGGGAATGAAC-TCGGTAT
129 CC-GCTGCCGCAACCCTCGGTC-AGATCCGATCTTAGACTGGGAATGAACTTC-GTAT
* ** * *
21281214 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTGAGCCCACGAAACGAGTGTGCGGGGGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCA
* * *
21281278 GCCGACTAAAGGGGCAGGATGCGCAAGCCGGGGATC
65 GCCGACCAAAGAGGCAGAATGCGCAAGCCGGGGATC
21281314 GAACGAGAGG
Statistics
Matches: 234, Mismatches: 43, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
182 1 0.00
183 111 0.47
184 121 0.52
185 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAG
CCGACCAAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCCTGCGTGCTGCCGATCC
GCTGCCGCAACCCTCGGTCAGATCCGATCTTAGACTGGGAATGAACTTCGTAT
Found at i:21281950 original size:26 final size:26
Alignment explanation
Indices: 21281913--21281964 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21281903 GCTCAAAATA
21281913 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
21281939 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
21281965 CTAAGCCTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:21283178 original size:26 final size:26
Alignment explanation
Indices: 21283137--21283189 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21283127 CCGGTCCGAT
21283137 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
** *
21283163 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
21283189 C
1 C
21283190 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:21289776 original size:26 final size:26
Alignment explanation
Indices: 21289738--21289790 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21289728 GGCTCAAAAT
21289738 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
21289764 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
21289790 C
1 C
21289791 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:21290064 original size:158 final size:154
Alignment explanation
Indices: 21289764--21290264 Score: 476
Period size: 158 Copynumber: 3.2 Consensus size: 154
21289754 ACTCTGTATG
* *
21289764 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAGCGTGCGGGTGCTCAGC
* * * * *
21289829 CGACAAGAGCGTCAGAATGCGCAAGCCA-GGGATCGGCCCGGTCCCCCTTGCGTGCTA-TCGATC
65 CGCCAAGAG-G-CAGAATGTGCAAGCTAGGGGATCGGCCCGGTCCCTC-TACGTGCTACT-GATC
*
21289892 CTACTGTCGTAACCCTCAGTTCGGTCTGAT
126 CTACTGTCGCAACCCTC-GTTCGGTCTGAT
* *
21289922 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAGCGTGCGGGTGCTCAG
* ** *
21289986 CCAGCCGAAGAGGCATAATGTGCAAG-TAGGGGATCGGCCCAATCCCATCTACGTGCTACTGGTC
64 CC-GCC-AAGAGGCAGAATGTGCAAGCTAGGGGATCGGCCCGGTCCC-TCTACGTGCTACTGATC
** * * * **
21290050 CCGCTGCCACAACCCTCGGTCTGGT-TGGGG
126 CTACTGTCGCAACCCTCGTTC-GGTCT-GAT
* * * * *
21290080 CTTAGACATGGAATGAACTCCTTATGCCTAAGCTAACCCATGAAATGGGCTTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAATGAGCGTGCGGGTGCTCAGC
* * * * *
21290145 TGACCAGAGAGGCAGAATGTGCAAGCT-GGGGATTGGCCTGGTCCCTCCTACGTGCTGCCGATCC
65 CG-CCA-AGAGGCAGAATGTGCAAGCTAGGGGATCGGCCCGGTCCCT-CTACGTGCTACTGATCC
* * *
21290209 TACTGTCGCAACCCTTGGTCCGGTCCGAT
127 TACTGTCGCAACCC-TCGTTCGGTCTGAT
21290238 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
21290265 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 49, Indels: 34
0.77 0.14 0.09
Matches are distributed among these distances:
157 11 0.04
158 251 0.91
159 10 0.04
160 5 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (154 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAATGAGCGTGCGGGTGCTCAGCC
GCCAAGAGGCAGAATGTGCAAGCTAGGGGATCGGCCCGGTCCCTCTACGTGCTACTGATCCTACT
GTCGCAACCCTCGTTCGGTCTGAT
Found at i:21290267 original size:26 final size:26
Alignment explanation
Indices: 21290238--21290290 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21290228 CCGGTCCGAT
21290238 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21290264 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21290290 C
1 C
21290291 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21290657 original size:26 final size:26
Alignment explanation
Indices: 21290619--21290671 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21290609 TCAGTCCTAT
21290619 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21290645 CTTAGACAT-GGAATTAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21290671 C
1 C
21290672 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21290988 original size:159 final size:160
Alignment explanation
Indices: 21290644--21291425 Score: 591
Period size: 159 Copynumber: 4.9 Consensus size: 160
21290634 AACTCCATAT
* *
21290644 GCTTAGACATGGAATTAAC-TCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTTCC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * ** * *
21290708 GCCGACCGGAGAGGCA-GATGCACAAGTCGGGGATTGACCCGGTCACCCAATACGTGCGGTCGAT
65 GCCGACCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGGT
* * * * *
21290772 CCTACTGTCGCAACCCTCGGTCTG-GT-CTGA
130 CCTGCTGCCACAACCCTCGGTCCGACTAC-GA
* * * * * ** *
21290802 TCTTAGAC-TGGGAATGAATTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCTTTGA
1 GCTTAGACAT-GGAATGAACTTCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * *
21290866 ACCGACCGGAGAGGCATAATGCGTAAGTCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGT
65 GCCGACCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGGT
*
21290931 CCTGCTACCACAACCCTCGGTCCGACTACG-
130 CCTGCTGCCACAACCCTCGGTCCGACTACGA
* * *
21290961 GCTTAGACATGGAATGAACTTCCTATGCCTCAGCCAACCCACGAAA-TAGGCATGCGGGCACTCA
1 GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCACTCA
** * * * * * * *
21291025 GCCGGTCGGAGAGGCAGAATGTGCAAATCGGGGATCGGCCTGATCCCCCCTACGTGCTGTCGATC
65 GCCGACCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGT-CCCCCT-C-TAC-GT-G---
* * **
21291090 CTGTAGCTGGTCCTGCTGCCACAACCCTCGATCC-AGTTTGA
122 CTGT--C-GGTCCTGCTGCCACAACCCTCGGTCCGACTACGA
* * * * * *
21291131 TCTTAGAC-TGGGAATGAAC-TCTGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCTCTG
1 GCTTAGACAT-GGAATGAACTTC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTC
* * * * * * *
21291194 AGCTGGCCGGAGAGGCATAATGAGCAAG-CTGGGGATTGGCCAGGTCCCTCTCTACGTGCTGTCG
64 AGCCGACCGGAGAGGCATAATGCGCAAGTC-GGGGATCGACCCGGTCCCCCTCTACGTGCTGTCG
* * * *
21291258 GTCCCGCTGCCACAACCCTCAGTCCGGCTA-GG
128 GTCCTGCTGCCACAACCCTCGGTCCGACTACGA
* * * * * * *
21291290 GCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
*** * * * * * * * *
21291355 CCGGTAGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAGTCCCTC-CTGCGTGCTGTCGATC
66 CCGACCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGGTC
*
21291419 CTACTGC
131 CTGCTGC
21291426 TGGTCCTCGG
Statistics
Matches: 491, Mismatches: 106, Indels: 54
0.75 0.16 0.08
Matches are distributed among these distances:
157 1 0.00
158 84 0.17
159 250 0.51
160 14 0.03
161 2 0.00
162 7 0.01
163 2 0.00
164 1 0.00
165 1 0.00
166 2 0.00
167 6 0.01
168 1 0.00
169 13 0.03
170 106 0.22
171 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGACCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGGTC
CTGCTGCCACAACCCTCGGTCCGACTACGA
Found at i:21291430 original size:329 final size:322
Alignment explanation
Indices: 21290644--21291434 Score: 936
Period size: 329 Copynumber: 2.4 Consensus size: 322
21290634 AACTCCATAT
* * * * *
21290644 GCTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCACTCAG
** * * * * *
21290709 CCGACCGGAGAGGCAG-ATGCACAAGTCGGGGATTGACCCGGTCACCCAATACGTGCGGTCGATC
66 CCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCAGTC-CCC-CTACGTGCTGTCGATC
* ** *
21290773 CTA--CT-G---TCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAATTTCGTATGCCT
129 CTATGCTGGTCCTCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAATCTCGTATGCCT
* * * *
21290832 AAGTCAACCCACGAAACGAGCGTACGGGCTTTGAACCGACCGGAGAGGCATAATGCGTAAGTCGA
194 AAGTCAAACCACGAAACGAGCGTACGGGCTCTGAACCGACCGGAGAGGCATAATGAGCAAGTCGA
* * * *
21290897 GGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTACCACAACCCTCGGTCCGACTACG
259 GGATCGACCAGGTCCCCCTCTACGTGCTGTCGGTCCCGCTACCACAACCCTCAGTCCGACTACG
* * * *
21290961 GCTTAGACATGGAATGAACTTCCTATGCCTCAGCCAACCCACGAAATAGGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCACTCAG
** * *
21291026 CCGGTCGGAGAGGCAGAATGTGCAAATCGGGGATCGG-CCTGATCCCCCCTACGTGCTGTCGATC
66 CCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCAG-T-CCCCCTACGTGCTGTCGATC
* *
21291090 CTGTAGCTGGTCCTGCTGCCACAACCCTCGATCCAGTTTGATCTTAGACTGGGAATGAA-CTCTG
129 CTAT-GCTGGTCCT-C-G---CAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAATCTC-G
* * * *
21291154 TATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCTCTGAGCTGGCCGGAGAGGCATAATGAGC
187 TATGCCTAAGTCAAACCACGAAACGAGCGTACGGGCTCTGAACCGACCGGAGAGGCATAATGAGC
* * * * *
21291219 AAG-CTGGGGATTGGCCAGGTCCCTCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCAGTCC
252 AAGTC-GAGGATCGACCAGGTCCCCCTCTACGTGCTGTCGGTCCCGCTACCACAACCCTCAGTCC
* *
21291283 GGCTAGG
316 GACTACG
* *
21291290 GCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCACTCAG
* * *
21291355 CCGGTAGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAGTCCCTCCTGCGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCAGTCCC-CCTACGTGCTGTCGATCC
21291420 TACTGCTGGTCCTCG
130 TA-TGCTGGTCCTCG
21291435 GTTCGATCTG
Statistics
Matches: 396, Mismatches: 58, Indels: 30
0.82 0.12 0.06
Matches are distributed among these distances:
317 89 0.22
318 19 0.05
319 1 0.00
320 2 0.01
321 1 0.00
324 1 0.00
325 1 0.00
326 1 0.00
327 1 0.00
328 7 0.02
329 269 0.68
330 4 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (322 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCACTCAG
CCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCAGTCCCCCTACGTGCTGTCGATCCT
ATGCTGGTCCTCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAATCTCGTATGCCTAA
GTCAAACCACGAAACGAGCGTACGGGCTCTGAACCGACCGGAGAGGCATAATGAGCAAGTCGAGG
ATCGACCAGGTCCCCCTCTACGTGCTGTCGGTCCCGCTACCACAACCCTCAGTCCGACTACG
Found at i:21291479 original size:26 final size:26
Alignment explanation
Indices: 21291449--21291499 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21291439 GATCTGATCC
*
21291449 TAGAC-TGGTAATGAACTCCGTATGCT
1 TAGACATGG-AATGAACTACGTATGCT
21291475 TAGACATGGAATGAACTACGTATGC
1 TAGACATGGAATGAACTACGTATGC
21291500 CTAATCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGACATGGAATGAACTACGTATGCT
Found at i:21291919 original size:500 final size:501
Alignment explanation
Indices: 21291114--21292050 Score: 1210
Period size: 500 Copynumber: 1.9 Consensus size: 501
21291104 GCTGCCACAA
* * * *
21291114 CCCTCGATCCAGTTTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAACCACGAAACG
1 CCCTCGATCCAGTTCGATCTTAGACAGGGAATGAACTCCGTATGCCCAAGTCAAACCACGAAACG
* * *** *
21291179 AGCGTGCGGGCTCTGAGCTGGCCGGAGAGGCATAATGAGCAAGCTGGGGATTGGCCAGGTCCCTC
66 AGCGTACGGGCTCTGAGCCGGCCGGAGAGGCATAATGAGCAAGCCAAGGATCGGCCAGGTCCCTC
*
21291244 TCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAAC
131 TCTACGTGCTGTCGGTCCCGCTACCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAAC
* * * ** *
21291309 TCCCTATGCTTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAGCCGGTAGGAGAGGCAGAAT
196 TCCCTATGCCTAACCCAACCCATGAAACGGGCATGCGGGAACTCAGCCGGCAGGAGAGGCAGAAT
* * * ***
21291374 GCACAAGCCGGGGATCGGCCCAGTCCCTCCTGCGTGCTGTCGATCCTAC-T-GCTGGTCCTCGGT
261 GCACAAGCCGAGGATCGACCCAGTCCCTCCTGCGTGCTATCGATCCTACATAGC-AACCCTCGGT
* * * *
21291437 TCGATCTGATCCTAGACTGGTAATGAACTCCGTATGCTTAGACAT-GGAATGAACTACGTATGCC
325 CCGATCCGATCCTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGGAATGAACTACGTATGCC
* *
21291501 TAA-TCCAACCCATGAAACGAGCGTG-GAAGCACTCAGCCAACCGGAGAGGCAGAATGCGTAAGT
389 TAAGT-CAACCCACGAAACGAGCGTGTG-AGCACTCAGCCAACCAGAGAGGCAGAATGCGTAAGT
21291564 CAGGGATTAGCCCGATCCCCCCCTGCGTGCAGTCGATCCTGCTACAGCAG
452 CAGGGATTAGCCCGATCCCCCCCTGCGTGCAGTCGATCCTGCTACAGCAG
* *
21291614 CCCTCGATCC-GATTCGATCTTAGACAGGGAATGAACTCCGTATGCCCAAGTCAATCCACGAAAT
1 CCCTCGATCCAG-TTCGATCTTAGACAGGGAATGAACTCCGTATGCCCAAGTCAAACCACGAAAC
* * * *
21291678 GAGTGTACGGGCGT-TGAGCCGGCCGGAGAGGCATAATGCGCAAGCCAAGGATCGGTCGGGTCCC
65 GAGCGTACGGGC-TCTGAGCCGGCCGGAGAGGCATAATGAGCAAGCCAAGGATCGGCCAGGTCCC
* * * * ** * *
21291742 TCTCTGCGTGCTG-CTGGTCCTGCTATCACAATCCTTGGTCTGGCTGGGGCTTAGACATGGAATG
129 TCTCTACGTGCTGTC-GGTCCCGCTACCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATG
* * *
21291806 AACTCCCTATGCCTAACCCAACCCATGAAACGGGCGTGCGGGAACTCAGTCGGCCGGAGAGGCAG
193 AACTCCCTATGCCTAACCCAACCCATGAAACGGGCATGCGGGAACTCAGCCGGCAGGAGAGGCAG
** * *
21291871 AATGCGTAAGTCGAGGATCGACCC-GAT-CCTCCTTGCGTGCTATCGATCCTGCTATAGCAACCC
258 AATGCACAAGCCGAGGATCGACCCAG-TCCCTCC-TGCGTGCTATCGATCCTAC-ATAGCAACCC
* * *
21291934 TCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTA
320 TCGGTCCGATCCGATCCTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTACGTA
* * *
21291999 TGCCTAAGTCAACCTACGAAACGAGCGTGTGGGCACTCAGCCGACCAGAGAG
385 TGCCTAAGTCAACCCACGAAACGAGCGTGTGAGCACTCAGCCAACCAGAGAG
21292051 ATAGGATGTG
Statistics
Matches: 370, Mismatches: 56, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
499 8 0.02
500 254 0.69
501 2 0.01
502 102 0.28
503 4 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (501 bp):
CCCTCGATCCAGTTCGATCTTAGACAGGGAATGAACTCCGTATGCCCAAGTCAAACCACGAAACG
AGCGTACGGGCTCTGAGCCGGCCGGAGAGGCATAATGAGCAAGCCAAGGATCGGCCAGGTCCCTC
TCTACGTGCTGTCGGTCCCGCTACCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAAC
TCCCTATGCCTAACCCAACCCATGAAACGGGCATGCGGGAACTCAGCCGGCAGGAGAGGCAGAAT
GCACAAGCCGAGGATCGACCCAGTCCCTCCTGCGTGCTATCGATCCTACATAGCAACCCTCGGTC
CGATCCGATCCTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTACGTATGCCTA
AGTCAACCCACGAAACGAGCGTGTGAGCACTCAGCCAACCAGAGAGGCAGAATGCGTAAGTCAGG
GATTAGCCCGATCCCCCCCTGCGTGCAGTCGATCCTGCTACAGCAG
Found at i:21291985 original size:26 final size:26
Alignment explanation
Indices: 21291949--21292001 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21291939 CCGATCCGAT
21291949 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21291975 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21292001 C
1 C
21292002 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21292710 original size:26 final size:26
Alignment explanation
Indices: 21292672--21292724 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21292662 GGCTCAAAAT
21292672 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21292698 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21292724 C
1 C
21292725 CTAATCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21293040 original size:158 final size:157
Alignment explanation
Indices: 21292697--21293112 Score: 437
Period size: 158 Copynumber: 2.6 Consensus size: 157
21292687 AACTCCGTAT
* * *
21292697 GCTTAGACATGGAATGAACTCCGTATGCCTAA-TCCAACCCACGAAACGAACGTACGGGCACTCA
1 GCTTAGACATGGAATGAACTCC-TATGCCTAAGT-CAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
21292761 GCCGGTCGGAAAGGCAGAATGCGCAAGCCGGGGATTGGCCTGACCCCCCCTCTGTGTTTTCGATC
64 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGGACCCCCCCGCTGTGCTGTCGATC
* * * *
21292826 CTGCTACCGCAACCCTTGGTCTGATCCGG
129 CCGCTACCACAACCCTCGGTCCGATCCGG
* * * *
21292855 TCTTAGA-TTGGAAATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACATGG-AATGAACT-CCTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * * * * *
21292919 ACCTTTTGGAGAGGTATAATGCGCAAGCCAGGGATCGAGCCGGTCCCCCTCCGC-GTGCTGTC-A
64 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCG-GCCGGACCCCC-CCGCTGTGCTGTCGA
* * *
21292982 GTCCCGGTGCCACAACCCTCGGTCCGA-CTGGG
127 -TCCCGCTACCACAACCCTCGGTCCGATC-CGG
* * * *
21293014 GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACACACGAAACGGGCGTGCGGGAGCTCAGC
1 GCTTAGACATGGAATGAACTCCTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
21293079 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC
66 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC
21293113 AAGCTGATCC
Statistics
Matches: 207, Mismatches: 43, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 145 0.70
159 53 0.26
160 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.29, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGGACCCCCCCGCTGTGCTGTCGATCCC
GCTACCACAACCCTCGGTCCGATCCGG
Found at i:21293212 original size:26 final size:26
Alignment explanation
Indices: 21293171--21293223 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21293161 TTGGTCCAAT
*
21293171 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21293197 CTTAGACTGAGG-ATGAACTCCATATG
1 CTTAGACTG-GGAATGAACTCCATATG
21293223 C
1 C
21293224 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21293933 original size:26 final size:26
Alignment explanation
Indices: 21293891--21293943 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21293881 GGCTCAAAAT
*
21293891 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21293917 CTTAGACAT-GGATTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21293943 C
1 C
21293944 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21294454 original size:25 final size:26
Alignment explanation
Indices: 21294416--21294467 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
21294406 CCGATTCGAT
21294416 CTTAGACAGGGAATGAACT-CGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
**
21294441 CTTAGACATTGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
21294467 C
1 C
21294468 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:21294858 original size:159 final size:157
Alignment explanation
Indices: 21294440--21294869 Score: 433
Period size: 159 Copynumber: 2.7 Consensus size: 157
21294430 GAACTCGTAT
*
21294440 GCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCCACAAA-ACGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCC-ACCCACAAACA-GAGCGTGCGGGCGCTCA
* * * *
21294504 GCTGATCGGAGAGACAGAATGCGCAAGCCGGGGATC-AGCCC-AGTCCCCCTCTGCGTGCTGTCG
64 GC-GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGA-TCCCCATCTGCGTGCTGCCG
** * * * *
21294567 ATCCGGCTAACGCAACCCCTGGTTCAGTTCAA
126 ATCCCACTAACACAACCCCTCGATCAGCTCAA
* * * * *
21294599 TCTTAGAC-TAGGAATGAACTCTGTATGCCTAAGTCCACCCACAAA-AGGAGCATGCGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CCACCCACAAACA-GAGCGTGCGGGCGCTC
* * * *
21294662 AGCCGACTGGCGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCATCTGCGTGCTGCCGG
63 AG-CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCATCTGCGTGCTGCCGA
* * ***
21294727 TCCCACTACCACAA-CCCTCGATCCGACTGGG
127 TCCCACTAACACAACCCCTCGATCAG-CTCAA
* *
21294758 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCACCCCACGAAACAG-GCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA-CCCAC-AAACAGAGCGTGCGGGCGCTCA
* *
21294822 GTCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCC
64 G-CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCC
21294870 CCTGCTTGCT
Statistics
Matches: 222, Mismatches: 39, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
158 12 0.05
159 199 0.90
160 10 0.05
161 1 0.00
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCACCCACAAACAGAGCGTGCGGGCGCTCAGC
GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCATCTGCGTGCTGCCGATCCC
ACTAACACAACCCCTCGATCAGCTCAA
Found at i:21294946 original size:26 final size:26
Alignment explanation
Indices: 21294917--21294969 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21294907 CCAATCCGCT
21294917 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21294943 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21294969 C
1 C
21294970 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21295438 original size:26 final size:26
Alignment explanation
Indices: 21295402--21295451 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
21295392 GCGGGCGCTC
21295402 AGACATAGAATGAACTCCGTATGCTT
1 AGACATAGAATGAACTCCGTATGCTT
*
21295428 AGACATGGAATGAACTCCGTATGC
1 AGACATAGAATGAACTCCGTATGC
21295452 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (26 bp):
AGACATAGAATGAACTCCGTATGCTT
Found at i:21295787 original size:25 final size:26
Alignment explanation
Indices: 21295741--21295792 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
21295731 CCGATCTAAT
21295741 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21295767 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21295792 C
1 C
21295793 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21296387 original size:11 final size:11
Alignment explanation
Indices: 21296371--21296395 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
21296361 CGGCTAGGCT
21296371 CTCCGGTGATG
1 CTCCGGTGATG
21296382 CTCCGGTGATG
1 CTCCGGTGATG
21296393 CTC
1 CTC
21296396 TGGCGATGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.32, G:0.32, T:0.28
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:21296511 original size:26 final size:26
Alignment explanation
Indices: 21296474--21296523 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
21296464 GCTCAAACTG
21296474 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
21296500 TTAGACAT-GGAATGAACTCCGTAT
1 TTAGAC-TGGGAATGAACTCCGTAT
21296524 ACCTAAGCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:21297054 original size:26 final size:26
Alignment explanation
Indices: 21297025--21297077 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21297015 CCGATCAGAT
21297025 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
21297051 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21297077 C
1 C
21297078 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21303480 original size:26 final size:26
Alignment explanation
Indices: 21303429--21303486 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
21303419 TTGACCCGAT
* *
21303429 CTTAGACTGGGAATGAACTCTATATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
21303455 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
*
21303481 CCTAAA
1 CTTAAA
21303487 TCAACCCATG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:21304906 original size:158 final size:156
Alignment explanation
Indices: 21304525--21305014 Score: 353
Period size: 158 Copynumber: 3.1 Consensus size: 156
21304515 TGCTTGACAT
* * ** * * ** * * *
21304525 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAGTGAGCGTACGGGCGCTCAGTCGGTTGGAG
1 GGAATGAACTCC-TATGCATAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAACCGATCGAAG
* * * * * * ** * **
21304590 -GGCAGAATGCGCAAGCCAGGGATCAACCCGGTCCCCCCTGCATGCTGTCGATCCTACTACTGCA
65 AGGCAAAATACGCAAGCCAGGGATCAGCCCGATCCCCCTTGCGTGCTGTCGATCCCGCTGCCACA
* * ****
21304654 ACCATCGGT-CTAGTCCAATCTTAGACTG
130 ACCTTC-GTCCTACT-GGGGCTTAGACTG
** * *
21304682 GGAATGAACTCCTATGCATAAGTTAACCCACAAAACGAGCATGCGGGCGCTGAGCCGATCGAAGA
1 GGAATGAACTCCTATGCATAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAACCGATCGAAGA
*** *
21304747 GG-AATAATACGCAAGTTGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCAC
66 GGCAA-AATACGCAAGCCAGGGATCAGCCCGATCCCCCT-TGCGTGCTGTCGATCCCGCTGCCAC
21304811 AACCTTCGTCCTACTGGGGCTTAGACAT-
129 AACCTTCGTCCTACTGGGGCTTAGAC-TG
* * * * *
21304839 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCGCTCAACC-AGTCGGA
1 GGAATGAACT-CCTATGCATAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAACCGA-TCGAA
* * * * * * * *
21304903 GAGGCAAAATTCGCAAGCCAGGGATCGGCCTGGTCCCCCTTGTGTGCTGTCGATCCTGCTGTCGC
64 GAGGCAAAATACGCAAGCCAGGGATCAGCCCGATCCCCCTTGCGTGCTGTCGATCCCGCTGCCAC
* * * **
21304968 AACCCTCGGTCCGA-TCCGATCTTAGACTG
129 AACCTTC-GTCCTACT-GGGGCTTAGACTG
21304997 GGAATGAACTCCGTATGC
1 GGAATGAACTCC-TATGC
21305015 TTAGACTGAG
Statistics
Matches: 261, Mismatches: 60, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
156 40 0.15
157 90 0.34
158 129 0.49
159 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
GGAATGAACTCCTATGCATAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAACCGATCGAAGA
GGCAAAATACGCAAGCCAGGGATCAGCCCGATCCCCCTTGCGTGCTGTCGATCCCGCTGCCACAA
CCTTCGTCCTACTGGGGCTTAGACTG
Found at i:21305017 original size:26 final size:26
Alignment explanation
Indices: 21304988--21305040 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21304978 CCGATCCGAT
*
21304988 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGCATG
21305014 CTTAGACTGAGGATGAACTCCGCATG
1 CTTAGACTGAGGATGAACTCCGCATG
21305040 C
1 C
21305041 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGCATG
Found at i:21305884 original size:26 final size:26
Alignment explanation
Indices: 21305855--21305910 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
21305845 CCAGTTCGAT
*
21305855 CTTAGACTAG-GAATGAACTTCGTAAG
1 CTTAGACT-GTGAATGAACTCCGTAAG
*
21305881 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGTGAATGAACTCCGTAAG
21305907 CTTA
1 CTTA
21305911 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGTGAATGAACTCCGTAAG
Found at i:21306626 original size:26 final size:26
Alignment explanation
Indices: 21306588--21306640 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21306578 GGCTCAAAAT
21306588 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21306614 CTTAGACAT-GGAATGGACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21306640 C
1 C
21306641 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21306975 original size:26 final size:25
Alignment explanation
Indices: 21306924--21306975 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
21306914 CCGGTCTGAT
*
21306924 CTTAGACTGGGAATGAACTCGTATG
1 CTTAGACTGGGAATGAACTCGAATG
*
21306949 CTTAGACTGGGGATGAACTCCGAATG
1 CTTAGACTGGGAATGAACT-CGAATG
21306975 C
1 C
21306976 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGAATG
Found at i:21307340 original size:26 final size:26
Alignment explanation
Indices: 21307289--21307341 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21307279 TCGGTCCAAT
**
21307289 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
21307315 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
21307341 C
1 C
21307342 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:21307605 original size:157 final size:157
Alignment explanation
Indices: 21307315--21307812 Score: 514
Period size: 157 Copynumber: 3.2 Consensus size: 157
21307305 ACTCTGTATG
*
21307315 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGC-TGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* * * * * *
21307378 CCA-ATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCGTG--TGCTGTCGA
65 CCAGCTC-GAGAGGCAGAATGCGCAAGCC-GCGATCGACCCGATCCCCC-C-TGCATGCTGCCGG
** *
21307440 TCCTGCTGCCACAACCCTCAATCCGGTTTGAT
126 TCCTGCTGCCACAACCCTCGGTCCGGTTCGAT
* * * * * *
21307472 CTTAGACTGGGAATGATCTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTGAGG
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCA-G
* * * *
21307537 CC-GC-CG-GAGGCATAATGCGTAAGCCGACGATTGGCCC-AGTCCCCCTCTGCATGCTGCCGGT
65 CCAGCTCGAGAGGCAGAATGCGCAAGCCG-CGATCGACCCGA-TCCCCC-CTGCATGCTGCCGGT
* * * **
21307598 -CTCGCTGCCACAACCCTCGGTCCAGCTGGGG
127 CCT-GCTGCCACAACCCTCGGTCCGGTTCGAT
**
21307629 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* * *
21307693 CCAGCTGGAGAGGCAGAATGCGCAAGCCGGGATCGACCCGATCCCCCCTGCGTGCTGCCGGTCCT
65 CCAGCTCGAGAGGCAGAATGCGCAAGCCGCGATCGACCCGATCCCCCCTGCATGCTGCCGGTCCT
*
21307758 GCTGCCACAACCCTTGGTCCGGTTCGAT
130 GCTGCCACAACCCTCGGTCCGGTTCGAT
* * *
21307786 TTTAGGCTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCCTATGC
21307813 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 48, Indels: 32
0.78 0.13 0.09
Matches are distributed among these distances:
155 3 0.01
156 38 0.14
157 185 0.67
158 29 0.10
159 22 0.08
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.18
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
CAGCTCGAGAGGCAGAATGCGCAAGCCGCGATCGACCCGATCCCCCCTGCATGCTGCCGGTCCTG
CTGCCACAACCCTCGGTCCGGTTCGAT
Found at i:21308462 original size:26 final size:26
Alignment explanation
Indices: 21308424--21308476 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21308414 GGCTCAAAAT
21308424 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21308450 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21308476 C
1 C
21308477 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21308752 original size:159 final size:157
Alignment explanation
Indices: 21308450--21308952 Score: 480
Period size: 159 Copynumber: 3.2 Consensus size: 157
21308440 ACTCCGTATG
*
21308450 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCTACGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACC-ACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
21308515 CAGTCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCCTGCGTGCTGTCGATCC
64 CGGCCGAAGAGGCAGAATGCGCAAACAGGGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGATCC
* *
21308580 TGCTATTGCAACCCTCAGTTCGGTCT-GAT
129 TGCTGTCGCAACCCTC-GTTCGGTCTCGAT
* * * *
21308609 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCGACTCACGAAACGAGCGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAAC-CACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** *
21308673 CCGGCCGAAGAGGCATAATACGTAAACAGGGGATCGGCCCAGTCCCCCTCTGCATGCTACCGGTC
63 CCGGCCGAAGAGGCAGAATGCGCAAACAGGGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGATC
* * ** * * * * **
21308738 CCGCTGCCATAACCCTCGGTCCGACTGGGG
128 CTGCTGTCGCAACCCTCGTTCGGTCTCGAT
* * *
21308768 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAG-CAA-CCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
21308833 CGGCC-AGAGAGGCAGAATGCGCAAGCCA-GGGATCGGCCCGGT-CCCTTCTGTATGCTGTCGAT
64 CGGCCGA-AGAGGCAGAATGCGCAA-ACAGGGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGAT
* * * *
21308895 CTTGCTGTCGCAACCCTCGGTTTGAT-TCAAT
127 CCTGCTGTCGCAACCCTC-GTTCGGTCTCGAT
21308926 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
21308953 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 63, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 1 0.00
158 61 0.23
159 203 0.75
160 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCACGAAACGAGCGTGCGGGCGCTCAGCCG
GCCGAAGAGGCAGAATGCGCAAACAGGGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGATCCTG
CTGTCGCAACCCTCGTTCGGTCTCGAT
Found at i:21308962 original size:26 final size:26
Alignment explanation
Indices: 21308926--21309030 Score: 149
Period size: 26 Copynumber: 4.0 Consensus size: 26
21308916 TTGATTCAAT
21308926 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21308952 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21308978 CCTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21309004 CTTAGCCAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21309030 C
1 C
21309031 CTAAGCCAAC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
26 70 0.99
27 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21309481 original size:553 final size:554
Alignment explanation
Indices: 21308426--21309534 Score: 1539
Period size: 553 Copynumber: 2.0 Consensus size: 554
21308416 CTCAAAATCT
* *
21308426 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCTAC
1 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* ** * * * *
21308491 GAAACGAGCATGCGGGCGCTCAGCCAGTCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGG
66 AAAACGAGCATGCGACCGCTCAGCCAGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGA
* *** *
21308556 TCCCCCCCTGCGTGCTGTCGATCCTGCTATTGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGA
131 TCCCCCCCTGCGTGCTATCGATCCTGCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGA
* *
21308621 ATGAACTCCGTATGCATAAGTCGACTCACGAAACGAGCGTGCGGGCACTGAGCCGGCCGAAGAGG
196 ATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGGCCGAAGAGG
* * *
21308686 CATAATACGTAAACAGGGGATCGGCCCAGTCCCCCTCTGCATGCTACCGGTCCCGCTGCCATAAC
261 CATAATACGCAAACAGGGGATCGGCCCAGTCCCCCTCTGCATGCTACCGATCCCGCTGCCACAAC
* * * *
21308751 CCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACAAAACGG
326 CCTCGATCCGACTGGGGCTTACACATGGAATGAACTCCCTACGCCTAAGCCAACCCACAAAACGG
* * **
21308816 GCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCTTC
391 GCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCC
* *** ** *
21308881 TGTATGCTGTCGATCTTGCTGTCGCAACCCTCGGTTTGATTCAATCTTAGACTGGGAATGAACTC
456 TGTATGCTGTCGATCCTGCACCCGCAACCCTCGGTCAGATCCAATCTTAGACTGGGAATGAACTC
*
21308946 CGTATGCTTAGACTGGGGATGAACTCTGTATGCC
521 CGTATGCTTAGACTGGGGATGAACTCCGTATGCC
* *
21308980 TAGACTGGGAATGAACTCTGTATGCTTAGCCATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * **
21309045 AAAACGAGCATGCGACCGCTCAGTCAGCC-AGAGAGGCTGAATGCGTAAGCCAGGGATCGACCCG
66 AAAACGAGCATGCGACCGCTCAGCCAGCCGA-AGAGGCAGAATGCACAAGCCAGGGATCGACCCG
* * **
21309109 AT-CCCCCTTGCGTGCTATCGATCCTGCTGCCACAACCCTTGGTCCGGTCTGATCTTAGACTGGG
130 ATCCCCCCCTGCGTGCTATCGATCCTGCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGG
* * **
21309173 AATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAGCCGGCCGAAGAG
195 AATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGGCCGAAGAG
* * * ** * *
21309238 GCATAATGCGCAAGTC-GGGGA-CTGG-CCTGATCCCCCTCTGTGTGCTGCTGATCCCGCTGCCA
260 GCATAATACGCAA-ACAGGGGATC-GGCCCAG-TCCCCCTCTGCATGCTACCGATCCCGCTGCCA
* *
21309300 CAACCCTCGATCTGACTGGGGCTTACACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAA
322 CAACCCTCGATCCGACTGGGGCTTACACATGGAATGAACTCCCTACGCCTAAGCCAACCCACAAA
* * * *
21309365 ATGGGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCC
387 ACGGGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCC
*
21309430 CCCCT-TCGTGCTGTCGATCCTGCACCCGCAACCCTCGGTCCAG-TCCAATCTTAGACTGGGAAT
452 CCCCTGT-ATGCTGTCGATCCTGCACCCGCAACCCTCGGT-CAGATCCAATCTTAGACTGGGAAT
*
21309493 GAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCC
515 GAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCC
21309533 TA
1 TA
21309535 AATCAACTCA
Statistics
Matches: 485, Mismatches: 64, Indels: 13
0.86 0.11 0.02
Matches are distributed among these distances:
552 5 0.01
553 364 0.75
554 116 0.24
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (554 bp):
TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
AAAACGAGCATGCGACCGCTCAGCCAGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGA
TCCCCCCCTGCGTGCTATCGATCCTGCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGA
ATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGGCCGAAGAGG
CATAATACGCAAACAGGGGATCGGCCCAGTCCCCCTCTGCATGCTACCGATCCCGCTGCCACAAC
CCTCGATCCGACTGGGGCTTACACATGGAATGAACTCCCTACGCCTAAGCCAACCCACAAAACGG
GCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCC
TGTATGCTGTCGATCCTGCACCCGCAACCCTCGGTCAGATCCAATCTTAGACTGGGAATGAACTC
CGTATGCTTAGACTGGGGATGAACTCCGTATGCC
Found at i:21309515 original size:26 final size:26
Alignment explanation
Indices: 21309479--21309531 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21309469 CCAGTCCAAT
*
21309479 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21309505 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21309531 C
1 C
21309532 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21310239 original size:26 final size:26
Alignment explanation
Indices: 21310201--21310253 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21310191 GGCTCAAAAT
21310201 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21310227 CTTAGAC-GTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
21310253 C
1 C
21310254 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21310620 original size:159 final size:158
Alignment explanation
Indices: 21310457--21310751 Score: 376
Period size: 158 Copynumber: 1.9 Consensus size: 158
21310447 AGCCGGTCGA
* * * * * *
21310457 AGAGGCATAATGCGCAAGTCGGGGATCAGCCTGGTCCC-CCTCTACGTGCTGTCGGTCCCACTAC
1 AGAGGCACAATACGCAAGTCGGGGATCAGCCCGGTCCCTCCGCT--GTGCTATCGATCCCACTAC
** ** *
21310521 CACAACCCTCGGTCTGGCTGGGGCTTAGGTATGAAATGAACTCCCTATGCCTAAGCCAACCCAAG
64 CACAACCCTCGGTCCAGCTGGGGCTTAGACATGAAATGAACTCCCTATGACTAAGCCAACCCAAG
21310586 AAATGGGCGTGTGGGCACTCAACTGGCCGG
129 AAATGGGCGTGTGGGCACTCAACTGGCCGG
* * * * * *
21310616 AGAGGTACAATACGTAAGTCGGGGATTAGCCCGGTCCCTCCGGTGTGTTATCGATCCCACTGCCA
1 AGAGGCACAATACGCAAGTCGGGGATCAGCCCGGTCCCTCCGCTGTGCTATCGATCCCACTACCA
* * * *
21310681 CAACCTTCGGTCCAGCTGTGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAA
66 CAACCCTCGGTCCAGCTGGGGCTTAGACATGAAATGAACTCCCTATGACTAAGCCAACCCAAGAA
21310746 ATGGGC
131 ATGGGC
21310752 ATGCAGGGCG
Statistics
Matches: 114, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
158 79 0.69
159 32 0.28
160 3 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
AGAGGCACAATACGCAAGTCGGGGATCAGCCCGGTCCCTCCGCTGTGCTATCGATCCCACTACCA
CAACCCTCGGTCCAGCTGGGGCTTAGACATGAAATGAACTCCCTATGACTAAGCCAACCCAAGAA
ATGGGCGTGTGGGCACTCAACTGGCCGG
Found at i:21310897 original size:26 final size:26
Alignment explanation
Indices: 21310861--21310913 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21310851 ACGGTCTGAT
21310861 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
21310887 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21310913 C
1 C
21310914 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21311266 original size:26 final size:26
Alignment explanation
Indices: 21311228--21311280 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21311218 CCGATCCAAT
*
21311228 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21311254 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21311280 C
1 C
21311281 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21311693 original size:158 final size:157
Alignment explanation
Indices: 21311423--21311926 Score: 509
Period size: 158 Copynumber: 3.2 Consensus size: 157
21311413 GCCTGGTCCA
* ** *
21311423 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTGA
* * * * *
21311488 GCAGGCCGGAGAGGCAGAATGCGCAAG-TCGGGGATC-AGCTCGATCCCCCCTACGTGTTGTCGA
66 GCCGGCCGGAGAGGCAGAATGCGTAAGCT-GGGGATCGACCT-GGTCCCCCCTAC-TGCTGTCGA
*
21311551 TCTTGCT-ACAGCAACCCTCATTCCGGTCTG
128 TCCTGCTGACA-CAACCCTCATTCCGGTCTG
* * * *
21311581 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGGAACGAGCATGCAGGCGCTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTGA
* * * * *
21311646 GCCGACCGGAGAGGCATAATGCATAAGCTGGGGATCGACCTGGTCCCCCTCTATCTGCTGCCGGT
66 GCCGGCCGGAGAGGCAGAATGCGTAAGCTGGGGATCGACCTGGTCCCCC-CTA-CTGCTGTCGAT
* **
21311711 CCTGCTGCCACAACCCTCGGTCCGG-CTGG
129 CCTGCTGACACAACCCTCATTCCGGTCT-G
* * * *
21311740 GTCTTAGACAT-GGAATGAAATCCCTATGCCTAAGCCAACCCATGAAACGAGCATGTGGGTGCTT
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGC-T
* * * * * * * * *
21311804 G-GCCGGTCAGAGAGGCAGAATGCGTAAACCGGGGATTGGCCCGGTCCCCCCTGCATGCTATCGA
64 GAGCCGGCCGGAGAGGCAGAATGCGTAAGCTGGGGATCGACCTGGTCCCCCCTAC-TGCTGTCGA
* * * *
21311868 TCCTACTGTCATAACCCTCGATT-TGGTCTG
128 TCCTGCTGACACAACCCTC-ATTCCGGTCTG
21311898 ATCTTAGACTGGGAATGAACTCCGTATGC
1 ATCTTAGACTGGGAATGAACTCCGTATGC
21311927 TTAGACTGGG
Statistics
Matches: 281, Mismatches: 53, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
157 2 0.01
158 146 0.52
159 127 0.45
160 6 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTGA
GCCGGCCGGAGAGGCAGAATGCGTAAGCTGGGGATCGACCTGGTCCCCCCTACTGCTGTCGATCC
TGCTGACACAACCCTCATTCCGGTCTG
Found at i:21311936 original size:26 final size:26
Alignment explanation
Indices: 21311900--21311952 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21311890 TTGGTCTGAT
*
21311900 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21311926 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21311952 C
1 C
21311953 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21318852 original size:159 final size:156
Alignment explanation
Indices: 21318558--21319060 Score: 519
Period size: 159 Copynumber: 3.2 Consensus size: 156
21318548 ACTCCGTATG
* *
21318558 CTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** *
21318623 CGGCCAGAGAGGTAGAATGCGCAAGTCGGGGATCGGCCCGATCCCACCCTACGTGCTGTCGATCC
66 CGGCGA-AGAGGTAGAATGCGCAAGTCGAGGATCGGCCCGAT-CCA-CCTTTGTGCTGCCGATCC
*** * * *
21318688 TGCTGCTGTAACCCTCGGTCTAGTCCAAT
128 TGCTGCCACAACCCTCAGTCCAGTCCGAT
* * * *
21318717 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAACGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
21318781 TCGGTCGAAGAGGTATAATGCGTAAGTCGAGGATCGGCCCGATCCACCTTTGTATGCTGCCGATC
65 CCGG-CGAAGAGGTAGAATGCGCAAGTCGAGGATCGGCCCGATCCACCTTTG--TGCTGCCGATC
* * **
21318846 CCGCTGCCACAACCCTCAGTCCAG-CTGGGG
127 CTGCTGCCACAACCCTCAGTCCAGTC-CGAT
* * * * * *
21318876 CTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGTGTGCGAGCGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCAG
* * * * * * *
21318940 CCGGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCGCCTTGCGTGCTGCAGATCC
65 CCGG-CGAAGAGGTAGAATGCGCAAGTCGAGGATCGGCCCGATCCACCTT-TGTGCTGCCGATCC
*
21319005 TGCTGCCACAACCCTCAGTCCCGTCCGAT
128 TGCTGCCACAACCCTCAGTCCAGTCCGAT
*
21319034 CTTAGA-TTGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
21319061 TTAGACTGGG
Statistics
Matches: 281, Mismatches: 53, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
157 5 0.02
158 61 0.22
159 211 0.75
160 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCGAAGAGGTAGAATGCGCAAGTCGAGGATCGGCCCGATCCACCTTTGTGCTGCCGATCCTGC
TGCCACAACCCTCAGTCCAGTCCGAT
Found at i:21319063 original size:26 final size:26
Alignment explanation
Indices: 21319034--21319086 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21319024 CCCGTCCGAT
*
21319034 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21319060 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21319086 C
1 C
21319087 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21319769 original size:26 final size:26
Alignment explanation
Indices: 21319740--21319792 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21319730 CCGATCTGAT
21319740 CTTAGAC-TAGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
21319766 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
21319792 C
1 C
21319793 CTCAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:21320133 original size:26 final size:26
Alignment explanation
Indices: 21320095--21320147 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21320085 CCAGTCCAAT
*
21320095 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
21320121 CTTAGACAT-GGAATGAAATCCGTATG
1 CTTAGAC-TGGGAATGAAATCCGTATG
21320147 C
1 C
21320148 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:21320149 original size:355 final size:353
Alignment explanation
Indices: 21319572--21320219 Score: 811
Period size: 355 Copynumber: 1.8 Consensus size: 353
21319562 CCAGCTGGGG
** *
21319572 CTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAAT
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAAT
* * * * *
21319637 CGACCGGAGAGGCAGAATGCGCAAGCGACGGATTGGCCCGGTCCCCCTGCGTGCTGTCGATCCTG
66 CGACAGGAGAGGCAGAATGCACAAGCGACGGATCGACCCGGTCCCCCTGCATGCTGTCGATCCTG
* * ** *
21319702 TGCTGGTCCTGCTGCCGTAACCCTTGGACCGATCTGATCTTAGACTAGGAATGAACTCTGTATGC
131 TGCTGGTCCTACTGCCGCAACCCTTGGACCGATCCAATCTTAGACTAGGAATGAACTCCGTATGC
* * * * * *
21319767 TTAGACATGGAATGAACTCTGTATGCCTCAGCCAACCCATGAAATGAGCGAACGGGCACTCAGTC
196 TTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCAGGAAACGAGCGAACGGGCACTCAGCC
* *
21319832 GGTCGGAGAGGCAAAATGTGCAAGCCGGGGATCGACCCAATCCCTCCCTTCGTTCTGTCGATCTT
261 GGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCAATCCCTCCCTTCGTTCTGTCGATCTT
21319897 GCTGCCGTAACCCTTGGTCCGGTCCGAT
326 GCTGCCGTAACCCTTGGTCCGGTCCGAT
* * * *
21319925 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTACGGGCGCTCA-
* * * * ** *
21319989 CTGGA-AGGAGAGGCATAATGCACAAGTC-AGGGATCGACTGGGTCCCCCTCTGCATGCTGTTGA
64 ATCGACAGGAGAGGCAGAATGCACAAG-CGACGGATCGACCCGGT-CCCC-CTGCATGCTGTCGA
* * *
21320052 TCCTGTGCTGGTCCTACTGTCGCAA-CCTTCGGTCC-AGTCCAATCTTAGACTGGGAATGAACTC
126 TCCTGTGCTGGTCCTACTGCCGCAACCCTT-GGACCGA-TCCAATCTTAGACTAGGAATGAACTC
* * ** *
21320115 CGTATGCTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCTAGGAAACGGGCGTGCGGGCG
189 CGTATGCTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCAGGAAACGAGCGAACGGGCA
* * *
21320180 CTCAGCCGGCCGGAGAGGCAGAATGCGTAAGTCGGGGATC
254 CTCAGCCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATC
21320220 AGCCCGGTCC
Statistics
Matches: 245, Mismatches: 43, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
352 1 0.00
353 82 0.33
354 13 0.05
355 149 0.61
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.21
Consensus pattern (353 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAAT
CGACAGGAGAGGCAGAATGCACAAGCGACGGATCGACCCGGTCCCCCTGCATGCTGTCGATCCTG
TGCTGGTCCTACTGCCGCAACCCTTGGACCGATCCAATCTTAGACTAGGAATGAACTCCGTATGC
TTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCAGGAAACGAGCGAACGGGCACTCAGCC
GGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCAATCCCTCCCTTCGTTCTGTCGATCTT
GCTGCCGTAACCCTTGGTCCGGTCCGAT
Found at i:21320259 original size:196 final size:196
Alignment explanation
Indices: 21319925--21320384 Score: 521
Period size: 196 Copynumber: 2.3 Consensus size: 196
21319915 CCGGTCCGAT
* * * * *
21319925 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGAGCGTGCGGGCGCTCAG
* * ** * ***
21319989 CTGGAAGGAGAGGCATAATGCACAAGTCAGGGATCGACTGGGTCCCCCTCTGCATGCTGTTGATC
65 CCGGAAGGAGAGGCAGAATGCACAAGTCAGGGATCGACCCGGTCCCCCTCTACATGCTACCGATC
* * *
21320054 CTGTGCTGGTCCTACTGTCGCAACCTTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTA
130 CTCTGCTGGTCCTACTGTCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTA
21320119 TG
195 TG
* * *
21320121 CTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCTAGGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGAGCGTGCGGGCGCTCAGC
** ** *
21320186 CGGCCGGAGAGGCAGAATGCGTAAGTCGGGGATC-AGCCCGGTCCCCC-CTACATGCTACCGATC
66 CGGAAGGAGAGGCAGAATGCACAAGTCAGGGATCGA-CCCGGTCCCCCTCTACATGCTACCGATC
* * *** *
21320249 CTACTGCTGGTCCTGCTGTTGCAACCCTCAGTCCAGTTTGATCTTAGATTGGGAATGAACTCCGT
130 CT-CTGCTGGTCCTACTGTCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGT
21320314 ATG
194 ATG
* * * * * * * * *
21320317 CCTAGGCATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAAAGAGAGTACGGGCGTTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGAGCGTGCGGGCGCTCAGC
21320382 CGG
66 CGG
21320385 CCAAAGAGGT
Statistics
Matches: 219, Mismatches: 42, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
195 15 0.07
196 203 0.93
197 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (196 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGAGCGTGCGGGCGCTCAGC
CGGAAGGAGAGGCAGAATGCACAAGTCAGGGATCGACCCGGTCCCCCTCTACATGCTACCGATCC
TCTGCTGGTCCTACTGTCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTAT
G
Found at i:21321063 original size:159 final size:158
Alignment explanation
Indices: 21320667--21321073 Score: 410
Period size: 159 Copynumber: 2.6 Consensus size: 158
21320657 TCAGTCCGGT
* * * **
21320667 CTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGTGGTTGC
1 CTGAGCTTAGACTG-GAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGAGTGTGGGCGC
* * *
21320732 TCAGCCAGTCGGAGAGGCAGAATGTGCAAGCCGGGGACCGACTCGATCCCCCCTTGTCTGCTATC
65 TCAGCCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGACCAACCCGATCCCCCCTTGTCTGCTATC
* * * * *
21320797 GATCCTGCTGTCACAACCCTCGGTCCAAT
130 GATCCCGCCGCCACAACCCTCGATCCAAG
* * * * *
21320826 CTGATCTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGAGGGCGC
1 CTGAGCTTAGACT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGAGTGTGGGCGC
** * * * *
21320891 T-AGGCCGACCGGAGAGGCATAATGTGCAAGCCTGGGATCAACCCTAT-CCCCCTT-TACGTGCT
65 TCA-GCCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGACCAACCCGATCCCCCCTTGT-C-TGCT
*
21320953 GTCGATCCCGCCGCCACAACCCTCGATCC-AG
127 ATCGATCCCGCCGCCACAACCCTCGATCCAAG
* ** * *
21320984 CTGGGGCTTAGACATGGAATGAACTCCCCACGCCTAAGCCAACCCACGAAATG-GTTGTGTGGGC
1 CT-GAGCTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAG-AGTGTGGGC
* * *
21321048 ACTCAGTCGGTCGGAGAGGTAGAATG
63 GCTCAGCCGGTCGGAGAGGCAGAATG
21321074 CACAAGCCAG
Statistics
Matches: 202, Mismatches: 38, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
157 1 0.00
158 13 0.06
159 185 0.92
160 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
CTGAGCTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGAGTGTGGGCGCT
CAGCCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGACCAACCCGATCCCCCCTTGTCTGCTATCG
ATCCCGCCGCCACAACCCTCGATCCAAG
Found at i:21321134 original size:318 final size:317
Alignment explanation
Indices: 21320805--21321383 Score: 709
Period size: 318 Copynumber: 1.8 Consensus size: 317
21320795 TCGATCCTGC
* *
21320805 TGTCACAACCCTCGGTCCAA-TCTGATCTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACC
1 TGTCACAACCCTCAGTCCAATTC-GATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACC
* * * * * *
21320869 CACGAAATGAGCGTGAGGGCGCTAGGCC-GACCGGAGAGGCATAATGTGCAAGCCTG-GGATCAA
65 CACGAAACGAGCATCAGGGCGCTAAGCCAG-CCGAAGAGGCATAATGCGCAAGCC-GAGGATCAA
* *
21320932 CCCTATCCCCCTT-TACGTGCTGTCGATCCCGCCGCCACAAC-CCTCGATCCAGCTGGGGCTTAG
128 CCCGAT-CCCCTTCTACGTGCTGCCGATCCCGCCGCCACAACTCCTCG-TCCAGCTGGGGCTTAG
* ** ** * *
21320995 ACATGGAATGAACTCCCCACGCCTAAGCCAACCCACGAAATGGTTGTGTGGGCACTCAGTCGGTC
191 ACATGGAATGAACT-CCCACGCCCAAGCCAACCCACGAAATGGGGGTGAAGGCACTCAGCCAGTC
21321060 GGAGAGGTAGAATGCACAAGCCAGAGATCGGCCCGATCCACCCCTGCGTACTGTCAATCCTAT
255 GGAGAGGTAGAATGCACAAGCCAGAGATCGGCCCGATCCACCCCTGCGTACTGTCAATCCTAT
* * ** * **
21321123 TGTCGCAACCCTCAGTTCGGTTCGATCTTAGACTGGGAATGACCTCTGTATGCCTAAGTCAACCC
1 TGTCACAACCCTCAGTCCAATTCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCC
* * * *
21321188 ATGAAACGAGCATCCGGGCGCTAAGCCAGCCGAAGAGGCATAATGCGTAAGCCGAGGATCGACCC
66 ACGAAACGAGCATCAGGGCGCTAAGCCAGCCGAAGAGGCATAATGCGCAAGCCGAGGATCAACCC
* * * * * * * **
21321253 GGTCCCTTTCTGCGTGCTGCCGGTCCCGCTGCCATAACTCTTCGTCTGGCTGGGGCTTAGACATG
131 GATCCCCTTCTACGTGCTGCCGATCCCGCCGCCACAACTCCTCGTCCAGCTGGGGCTTAGACATG
** *
21321318 GAATGAACTCCCTTGCCCAAGCCAACCCATGAAATGGGGGTGAAGGCACTCAGCCAGTCGGAGAG
196 GAATGAACTCCCACGCCCAAGCCAACCCACGAAATGGGGGTGAAGGCACTCAGCCAGTCGGAGAG
21321383 G
261 G
21321384 CAAAATGCGC
Statistics
Matches: 216, Mismatches: 40, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
317 53 0.25
318 156 0.72
319 7 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (317 bp):
TGTCACAACCCTCAGTCCAATTCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCC
ACGAAACGAGCATCAGGGCGCTAAGCCAGCCGAAGAGGCATAATGCGCAAGCCGAGGATCAACCC
GATCCCCTTCTACGTGCTGCCGATCCCGCCGCCACAACTCCTCGTCCAGCTGGGGCTTAGACATG
GAATGAACTCCCACGCCCAAGCCAACCCACGAAATGGGGGTGAAGGCACTCAGCCAGTCGGAGAG
GTAGAATGCACAAGCCAGAGATCGGCCCGATCCACCCCTGCGTACTGTCAATCCTAT
Found at i:21321863 original size:159 final size:158
Alignment explanation
Indices: 21321503--21321904 Score: 369
Period size: 159 Copynumber: 2.5 Consensus size: 158
21321493 ACTCCGTATA
* * * * *
21321503 CTTAGGCATGGAATGAACTCCGTATGCCCAAGCCAACCCATGAAACGAGAGTGCGGCCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAACCCAACCCATGAAACGAGCGTGCGGGCGCTTAGC
* * * ** * * * *
21321568 CGATCGGAGAGGCAGAATGCGTAAGTCGGGGACCGATCCGATCCCCCCTGCTTGCTGTCGATCCT
66 CGATCAGAGAGGCAGAATGCATAAGCCAAGGACCGACCCGATCCCCCCTACATGCTGTCGATCCC
** ** * * *
21321633 GCTGTCACATTCTTCGATCTAGTCTGAT
131 GCTACCACAACCCTCGATCTAGGCTGAG
* * ** *
21321661 CTTAGA-TTGGGAATGAACTCTGTATGCCTAATTCAACCGATGAAACGAGCGTGCGGGCG-TTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAACCCAACCCATGAAACGAGCGTGCGGGCGCTT-A
* * * * * *
21321724 GCCGGTCAGAGAGGCATAATGCATAAGCCAAGGATCGGCCCGATCCCTCTCTACATGCTGTCGGT
64 GCCGATCAGAGAGGCAGAATGCATAAGCCAAGGACCGACCCGATCCC-CCCTACATGCTGTCGAT
* *
21321789 CCCGCTACCACAACCCTCGGTCT-GGCTAGGG
128 CCCGCTACCACAACCCTCGATCTAGGCT-GAG
* * * *
21321820 CTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCATGAAACGGGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAACCCAACCCATGAAACGAGCGTGCGGGCGCTTAGC
** * *
21321885 CGGCCAAAGAGACAGAATGC
66 CGATCAGAGAGGCAGAATGC
21321905 GCAAGCCAGG
Statistics
Matches: 192, Mismatches: 46, Indels: 11
0.77 0.18 0.04
Matches are distributed among these distances:
157 3 0.02
158 89 0.46
159 98 0.51
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAACCCAACCCATGAAACGAGCGTGCGGGCGCTTAGC
CGATCAGAGAGGCAGAATGCATAAGCCAAGGACCGACCCGATCCCCCCTACATGCTGTCGATCCC
GCTACCACAACCCTCGATCTAGGCTGAG
Found at i:21322010 original size:26 final size:26
Alignment explanation
Indices: 21321981--21322030 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
21321971 GTCCGATCAC
21321981 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
21322007 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
21322031 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:21322732 original size:26 final size:26
Alignment explanation
Indices: 21322694--21322746 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21322684 GGCTCAAAAT
21322694 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21322720 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21322746 C
1 C
21322747 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21323568 original size:159 final size:157
Alignment explanation
Indices: 21323273--21323728 Score: 459
Period size: 159 Copynumber: 2.9 Consensus size: 157
21323263 ATGCTTAGAG
* * * *
21323273 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCGCTCAGCTGGTCAG
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGATCAG
* * * * * * *
21323338 AGAGGCAGAATGCGTAAGCTGGGGACCAGCCTGATCCCTCCCTGCGTGCTGTCGATCCTACTACC
66 AGAGGCAGAATGCGTAAGC-CGGGATCGGCCCGATCCC-CCCTGCGTGCTGCCGGTCCTGCTACC
** * * *
21323403 GTAACCCT-TGGTCCG-GTCCAATCTTACAC
129 ACAACCCTCT-GTACGACT-CAAGCTTACAC
* * * * *
21323432 -TGGGAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCG
1 AT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGATCA
* * * *
21323496 GAGAGGCATAATGCGTTAGCCAGGGATCGGCCCGATCCCCCTTTGCGTGCTGCCGGTCCTGCTGC
65 GAGAGGCAGAATGCGTAAGCC-GGGATCGGCCCGATCCCCC-CTGCGTGCTGCCGGTCCTGCTAC
*** *
21323561 CACAACCCTCTGTACGACTGGGGCTTAGAC
128 CACAACCCTCTGTACGACTCAAGCTTACAC
* * * *
21323591 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAGCTGACCAG
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGATCAG
** * * * *
21323656 AGAGGCAGAATGCACAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTGCTGGTCCTGCTACCG
66 AGAGGCAGAATGCGTAAGCCG-GGATCGGCCCGATCCCCCCTGCGTGCTGCCGGTCCTGCTACCA
*
21323721 TAACCCTC
130 CAACCCTC
21323729 AGCCCGATCC
Statistics
Matches: 241, Mismatches: 49, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
158 32 0.13
159 206 0.85
160 3 0.01
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (157 bp):
ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGATCAG
AGAGGCAGAATGCGTAAGCCGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGGTCCTGCTACCAC
AACCCTCTGTACGACTCAAGCTTACAC
Found at i:21323784 original size:26 final size:26
Alignment explanation
Indices: 21323742--21323794 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21323732 CCGATCCGAT
*
21323742 CTTAGACTGGGACTGAAGTCCATATG
1 CTTAGACTGGGACTGAACTCCATATG
*
21323768 CTTAGACTGGGGA-TGAACTCCGTATG
1 CTTAGACT-GGGACTGAACTCCATATG
21323794 C
1 C
21323795 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGACTGAACTCCATATG
Found at i:21324139 original size:26 final size:26
Alignment explanation
Indices: 21324110--21324160 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21324100 TGATCCGATC
*
21324110 TTAGAC-TGGGAATGAACTCTGTATGT
1 TTAGACAT-GGAATGAACTCCGTATGT
21324136 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
21324161 CCTAAGCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGT
Found at i:21324442 original size:160 final size:158
Alignment explanation
Indices: 21324136--21324533 Score: 417
Period size: 160 Copynumber: 2.5 Consensus size: 158
21324126 CTCTGTATGT
* *
21324136 TTAGACATGGAATGAACTCCGTATGCCTAAGCCATCCACGAAACGTGCGTGCGGGTGC-CAGCCA
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCACGAAACGAGCGTGCGGGTGCTCAGCCA
* * * * * ** *
21324200 GCCGAAGAGGCCAAATGTGCAAGTCGAGGATCGGCTCGGTCCCCGCCCTACGTGCTGTCAATCCT
66 GCCGGAGAGG-CAAATGCGCAAGCCGAGGATCGGCCCGATCCCCGCCCTACGTGCTACCAATCCC
* * * *
21324265 GTTACCGCAACCCTCGGTCCGAG-TCAATC
130 GTCACCACAAACCTCGGTCC-AGCTCAAGC
* * * *
21324294 TTAGAC-TAGGAATGAAATCCGTATGCCTAAGTCAACTCACGAAACAAGCGTGCGGGTGCTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC-CACGAAACGAGCGTGCGGGTGCTCAGC
* * **
21324358 CAGCTGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCTCCC-CTCTACGTGCTACCGGT
64 CAGCCGGAGAGGCA-AATGCGCAAGCCGAGGATCGGCCCGATC-CCCGCCCTACGTGCTACCAAT
* ***
21324422 CCCGTCGCCACAAACCTCGGTCCAGCTGGGGC
127 CCCGTCACCACAAACCTCGGTCCAGCTCAAGC
* * *
21324454 TTAGACATGGAATGAACTCCGTATTGCTTAAGCCAACCCACGAAACGAGCGTGGCAGGCGCTCAG
1 TTAGACATGGAATGAACTCCGTA-TGCCTAAGCCAA-CCACGAAACGAGCGT-GCGGGTGCTCAG
*
21324519 CCAGCCGGATAGGCA
63 CCAGCCGGAGAGGCA
21324534 GAATCCGTAA
Statistics
Matches: 195, Mismatches: 35, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
157 1 0.01
158 31 0.16
159 24 0.12
160 89 0.46
161 27 0.14
162 23 0.12
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCACGAAACGAGCGTGCGGGTGCTCAGCCA
GCCGGAGAGGCAAATGCGCAAGCCGAGGATCGGCCCGATCCCCGCCCTACGTGCTACCAATCCCG
TCACCACAAACCTCGGTCCAGCTCAAGC
Found at i:21325887 original size:26 final size:26
Alignment explanation
Indices: 21325849--21325901 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
21325839 GGCTCAAACT
21325849 CTTAGACTAGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
21325875 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCTGTATG
21325901 C
1 C
21325902 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:21327416 original size:159 final size:157
Alignment explanation
Indices: 21327190--21327745 Score: 432
Period size: 159 Copynumber: 3.5 Consensus size: 157
21327180 TCTTAGATTG
** * * *
21327190 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGAGGGCGCT-AGGCC-GACCGG
1 GGAATGAACTCCCCATGCCTAAGCCAACCCACGAAATGAGCGTGAGGGCACTCA-GCCAG-TCGG
* * *
21327253 AGAGGCATAATGCGCAAGCCTGGGATCAACCCTATCCCCCTTTGCGTGCTGTCGATCCCGCCGCC
64 AGAGGCATAATGCGCAAGCC-GGGATCGACCCGATCCCCCTTTGCGTGCTGTCGATCCCGCTGCC
*
21327318 ACAACCCTCGATCCAGCTGGGGCTTAGACAT
128 ACAACCCTCG-TCCGGCTGGGGCTTAGACAT
* * * * * *
21327349 GGAATGAACTCCCCACGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCACTCAGTCGGTCGGAG
1 GGAATGAACTCCCCATGCCTAAGCCAACCCACGAAATGAGCGTGAGGGCACTCAGCCAGTCGGAG
* * * * * * ** * *
21327414 AGGTAGAATGCACAAGCCAGAGATCGGCCCGATCCACCC-CTGCGTGCTGTC-AT-CCTATGTCG
66 AGGCATAATGCGCAAGCC-GGGATCGACCCGATCC-CCCTTTGCGTGCTGTCGATCCCGCTGCCA
* * * **
21327476 CAACCCTCGGTTCGGTTCGATCTTAGAC-T
129 CAACCCTC-GTCCGGCTGGGGCTTAGACAT
*** * * * * * * * *
21327505 GGGAATG-ACTCTGTATGCCTAAGTCAACCCATGAAACGAGCAT-CGGGCGCTAAGCCAG-CCGA
1 -GGAATGAACTCCCCATGCCTAAGCCAACCCACGAAATGAGCGTGAGGGCACTCAGCCAGTCGGA
* * * * * *
21327567 AAGGCATAATGCGTAAGCCGGGATCGACCCGGT-CCCTTTCTGCGTGCTGCCGGTCCCGCTGCCA
65 GAGGCATAATGCGCAAGCCGGGATCGACCCGATCCCCCTT-TGCGTGCTGTCGATCCCGCTGCCA
* *
21327631 CAACTCTTCGTCTGGCTGGGGCTTAGACAT
129 CAAC-CCTCGTCCGGCTGGGGCTTAGACAT
* * * * * *
21327661 GGAATGAACT-CCCTTGCCCAAGCCAACCCATGAAATGGGGGTGAAGGCACTCAGCCAGTCGGAG
1 GGAATGAACTCCCCATGCCTAAGCCAACCCACGAAATGAGCGTGAGGGCACTCAGCCAGTCGGAG
* *
21327725 AGGCAAAATGCGCAAGTCGGG
66 AGGCATAATGCGCAAGCCGGG
21327746 GATTCAGTCT
Statistics
Matches: 296, Mismatches: 87, Indels: 30
0.72 0.21 0.07
Matches are distributed among these distances:
151 2 0.01
152 1 0.00
153 21 0.07
154 18 0.06
155 61 0.21
156 45 0.15
157 51 0.17
158 3 0.01
159 89 0.30
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
GGAATGAACTCCCCATGCCTAAGCCAACCCACGAAATGAGCGTGAGGGCACTCAGCCAGTCGGAG
AGGCATAATGCGCAAGCCGGGATCGACCCGATCCCCCTTTGCGTGCTGTCGATCCCGCTGCCACA
ACCCTCGTCCGGCTGGGGCTTAGACAT
Found at i:21328375 original size:22 final size:25
Alignment explanation
Indices: 21328330--21328375 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
21328320 GTCCGATCAC
21328330 AGACTGGGAATGAACTCCGTATGCT
1 AGACTGGGAATGAACTCCGTATGCT
21328355 AGACTGGG-ATGAA-T-CGTATGC
1 AGACTGGGAATGAACTCCGTATGC
21328376 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 7 0.33
23 1 0.05
24 5 0.24
25 8 0.38
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.24
Consensus pattern (25 bp):
AGACTGGGAATGAACTCCGTATGCT
Found at i:21329078 original size:26 final size:26
Alignment explanation
Indices: 21329040--21329092 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21329030 GGCTCAAAAT
21329040 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21329066 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21329092 C
1 C
21329093 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21330067 original size:158 final size:159
Alignment explanation
Indices: 21329607--21330069 Score: 449
Period size: 158 Copynumber: 2.9 Consensus size: 159
21329597 AACTCTGTAT
* * * *
21329607 GCTTAGAGATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCGCTCA
1 GCTTAGACATGGAAATG-ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
21329671 GCTGGTCAGAGAGGCAGAATGCGTAAGCTGGGGA-CCAGCCTGATCCCTCCCTGCGTGCTG-TCG
65 GCTGATCAGAGAGGCAGAATGCGTAAGCCGAGGATCGA-CCCGATCCC-CCCTGCGTGCTGCT-G
* * * *
21329734 ATCCTACTACCGTAACCCT-TGGTCCGGTCCAA
127 GTCCTGCTACCGTAACCCTCTGGTACGCTCCAA
* * * * *
21329766 TCTTACAC-TGGGAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAAATGACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
21329830 -CCGATCGGAGAGGCATAATGCGTTAGCC-AGGGATCGGCCCGATCCCCCTTTGCGTGCTGCCGG
65 GCTGATCAGAGAGGCAGAATGCGTAAGCCGA-GGATCGACCCGATCCCCC-CTGCGTGCTGCTGG
* ** ***
21329893 TCCTGCTGCCACAACCCTCT-GTACGACT-GGG
128 TCCTGCTACCGTAACCCTCTGGTACG-CTCCAA
* * *
21329924 GCTTAGACATGGAAATGACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAAATGACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** *
21329989 CTGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTGCTGGTCC
66 CTGATCAGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGCTGGTCC
21330054 TGCTACCGTAACCCTC
131 TGCTACCGTAACCCTC
21330070 AGCCGATCCG
Statistics
Matches: 240, Mismatches: 53, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 144 0.60
159 91 0.38
160 3 0.01
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAAATGACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CTGATCAGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGCTGGTCC
TGCTACCGTAACCCTCTGGTACGCTCCAA
Found at i:21330124 original size:26 final size:26
Alignment explanation
Indices: 21330082--21330134 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21330072 CCGATCCGAT
*
21330082 CTTAGACTGGGACTGAAGTCCATATG
1 CTTAGACTGGGACTGAACTCCATATG
*
21330108 CTTAGACTGGGGA-TGAACTCCGTATG
1 CTTAGACT-GGGACTGAACTCCATATG
21330134 C
1 C
21330135 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGACTGAACTCCATATG
Found at i:21330480 original size:26 final size:26
Alignment explanation
Indices: 21330451--21330501 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21330441 TGATCCGATC
*
21330451 TTAGAC-TGGGAATGAACTCTGTATGT
1 TTAGACAT-GGAATGAACTCCGTATGT
21330477 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
21330502 CCTAAGCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGT
Found at i:21330781 original size:159 final size:158
Alignment explanation
Indices: 21330477--21330872 Score: 456
Period size: 159 Copynumber: 2.5 Consensus size: 158
21330467 CTCTGTATGT
* *
21330477 TTAGACATGGAATGAACTCCGTATGCCTAAGCCATCCCACGAAACGTGCGTGCGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * * * ** *
21330542 AGCCGAAGAGGCCAAATGTGCAAGTCGAGGATCGGCTCGGTCCCCGCCTACGTGCTGTCAATCCT
66 AGCCGGAGAGG-CAAATGCGCAAGCCGAGGATCGGCCCGATCCCCGCCTACGTGCTACCAATCCC
* * * *
21330607 GTTACCGCAACCCTCGGTCCGAG-TCAATC
130 GTCACCACAAACCTCGGTCC-AGCTCAAGC
* * * * *
21330636 TTAGAC-TAGGAATGAAATCCGTATGCCTAAGTCAACTCACGAAACAAGCGTGCGGGTGCTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* **
21330700 CAGCTGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCC-CTCTACGTGCTACCGGTC
65 CAGCCGGAGAGGCA-AATGCGCAAGCCGAGGATCGGCCCGATCCCCGC-CTACGTGCTACCAATC
* ***
21330764 CCGTCGCCACAAACCTCGGTCCAGCTGGGGC
128 CCGTCACCACAAACCTCGGTCCAGCTCAAGC
* * *
21330795 TTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
*
21330860 AGCCGGATAGGCA
66 AGCCGGAGAGGCA
21330873 GAATCCGTAA
Statistics
Matches: 196, Mismatches: 36, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
158 6 0.03
159 189 0.96
160 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
AGCCGGAGAGGCAAATGCGCAAGCCGAGGATCGGCCCGATCCCCGCCTACGTGCTACCAATCCCG
TCACCACAAACCTCGGTCCAGCTCAAGC
Found at i:21330902 original size:159 final size:158
Alignment explanation
Indices: 21330477--21330922 Score: 443
Period size: 159 Copynumber: 2.8 Consensus size: 158
21330467 CTCTGTATGT
* *
21330477 TTAGACATGGAATGAACTCCGTATGCCTAAGCCATCCCACGAAACGTGCGTGCGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * * * * ** *
21330542 AGCCGAAGAGGCCAAATGTGCAAGTCGAGGA-TCGGCTCGGTCCCCGCCTACGTGCTGTCAATCC
66 AGCCGGAGAGG-CAAATGCGCAAGTCGAGGATTAGCCT-GATCCCCACCTACGTGCTACCGATCC
* * * * *
21330606 TGTTACCGCAACCCTCGGTCCGAGTCAATC
129 CGTCACCACAAACCTCGGTCCGAGTCAAGC
* * * * *
21330636 TTAGAC-TAGGAATGAAATCCGTATGCCTAAGTCAACTCACGAAACAAGCGTGCGGGTGCTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * ** * *
21330700 CAGCTGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCC-CTCTACGTGCTACCGGTC
65 CAGCCGGAGAGGCA-AATGCGCAAGTCGAGGATTAGCCTGATCCCCAC-CTACGTGCTACCGATC
* ***
21330764 CCGTCGCCACAAACCTCGGTCC-AGCTGGGGC
128 CCGTCACCACAAACCTCGGTCCGAG-TCAAGC
* * *
21330795 TTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * *
21330860 AGCCGGATAGGCAGAATCCGTAAGTC-AGGGATTAGCCTGATCCCCACCTGCGTGCTACCGATC
66 AGCCGGAGAGGCA-AATGCGCAAGTCGA-GGATTAGCCTGATCCCCACCTACGTGCTACCGATC
21330923 TTACTGCTGG
Statistics
Matches: 231, Mismatches: 48, Indels: 16
0.78 0.16 0.05
Matches are distributed among these distances:
158 7 0.03
159 220 0.95
160 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
AGCCGGAGAGGCAAATGCGCAAGTCGAGGATTAGCCTGATCCCCACCTACGTGCTACCGATCCCG
TCACCACAAACCTCGGTCCGAGTCAAGC
Found at i:21331164 original size:514 final size:515
Alignment explanation
Indices: 21330108--21331397 Score: 1379
Period size: 514 Copynumber: 2.5 Consensus size: 515
21330098 AGTCCATATG
* * * * *
21330108 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGTGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
* * * * * *
21330173 CGGCTGGAGAGGCATAATGCGCAAGCCGGGGATCAGCTCGATTCACCTCTGCGTGCTGTCGATCC
66 CAGCTGGAGAGGCATAATGCGCAAGCCGAGGATCGGCTCGATCCCCCTCTACGTGC--T--A---
*
21330238 CCGCTGTCGGTCC-TGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCG
124 CCG--GTC---CCGT-CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCG
* * * * * * * *
21330302 CATGCCTAAGCCAACCCACAAAACGAGCGT-CCGAGCACTCAACTGGCTGGAGAGGTAGAATGCA
183 TATGCCTAAGCCAACCCACGAAACGAGCGTGCAG-GCGCTCAACCGGCCGGAGAGGCAGAATCCA
* * ** * * * *
21330366 CAAGCCGAGGATCGGTTCGGTCCCCCCTGCATGCTACCAATCCTGCTACTGGTCCTGCTACTGCA
247 CAAGCAGAGGATAGCCTCGATCCCCCCTGCATGCTACCAATCCTACTACTGGTCCTACTACAGCA
* * *
21330431 ACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGTTTAGACATGGAATGAACTC
312 ACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTC
* ** * * *
21330496 CGTATGCCTAAGCCATCCCACGAAACGTGCGTGCGGGTGCTCAGCCAGCCGAAGAGGCCAAATGT
377 CGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAGCCAGCAGAAGAGGCCAAATGC
* * * * * * *
21330561 GCAAGTCGAGGATCGGCTCGGTCCCCGCCTACGTGCTGTCAATCCTGTTACCGCAACCCTCGGTC
442 GCAAGCCGAGGACCGACCCGATCCCCGCCTACGTGCTGTCAATCCTGCTACCACAACCCTCGGTC
21330626 CGAGTCAAT
507 CGAGTCAAT
* * * * * *
21330635 CTTAGACTAGGAATGAAATCCGTATGCCTAAGTCAACTCACGAAACAAGCGTGCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
*
21330700 CAGCTGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTACGTGCTACCGGTCC
66 CAGCTGGAGAGGCATAATGCGCAAGCCGAGGATCGGCTCGATCCCCCTCTACGTGCTACCGGTCC
* * *
21330765 CGTC-GCCACAAACCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCTTAAGCCA
131 CGTCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* * * **
21330829 ACCCACGAAACGAGCGTGCAGGCGCTCAGCCAGCCGGATAGGCAGAATCCGTAAGTCAG-GGATT
196 ACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCGGAGAGGCAGAATCCACAAG-CAGAGGA-T
* * * *
21330893 AGCCT-GATCCCCACCTGCGTGCTACCGATCTTACTGCTGGTCCTACTACAGCAACCCTC-AGTC
259 AGCCTCGATCCCC-CCTGCATGCTACCAATCCTACTACTGGTCCTACTACAGCAACCCTCGA-TC
** *
21330956 TGATGTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATTAAATGAACTCCGTATGCCTA
322 TGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTA
* *
21331021 AGCCAACCCACGAAACAAGCGTACGGGTGCTCAGCCGGTCAG-AGAGG-CAGAATGCGTAAGCCG
387 AGCCAACCCACGAAACAAGCGTACGGGTGCTCAGCCAG-CAGAAGAGGCCA-AATGCGCAAGCCG
* * ** * * *
21331084 GGGACCGACCCGATCCCC-CCTGCGTGCTGTTGATCCTGCTGCCACAACCCTCGGTCTGA-TCCG
450 AGGACCGACCCGATCCCCGCCTACGTGCTGTCAATCCTGCTACCACAACCCTCGGTCCGAGT-CA
21331147 AT
514 AT
* * *
21331149 CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCATGAAACGAGCGGGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
* * * * * ***
21331214 TAG-TCGGAGAGGCATAATGCGTAAGTC-AGGGATTGGCTCGATCCCTCC-CTACGTGTTGTAGG
66 CAGCT-GGAGAGGCATAATGCGCAAGCCGA-GGATCGGCTCGATCCC-CCTCTACGTGCTACCGG
* * * *
21331276 -CCACG-CTGCCACAACCCTTGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATACCTAA
128 TCC-CGTCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
* * * * *
21331339 GCCAAACCATGAAACG-GTCGTGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGCACAAG
192 GCCAACCCACGAAACGAG-CGTGCAGGCGCTCAACCGGCCGGAGAGGCAGAATCCACAAG
21331398 TCGGGGATCG
Statistics
Matches: 638, Mismatches: 110, Indels: 43
0.81 0.14 0.05
Matches are distributed among these distances:
513 7 0.01
514 344 0.54
515 173 0.27
516 3 0.00
518 3 0.00
520 3 0.00
523 1 0.00
525 1 0.00
527 103 0.16
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (515 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
CAGCTGGAGAGGCATAATGCGCAAGCCGAGGATCGGCTCGATCCCCCTCTACGTGCTACCGGTCC
CGTCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
ACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCGGAGAGGCAGAATCCACAAGCAGAGGATAG
CCTCGATCCCCCCTGCATGCTACCAATCCTACTACTGGTCCTACTACAGCAACCCTCGATCTGAT
CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCC
AACCCACGAAACAAGCGTACGGGTGCTCAGCCAGCAGAAGAGGCCAAATGCGCAAGCCGAGGACC
GACCCGATCCCCGCCTACGTGCTGTCAATCCTGCTACCACAACCCTCGGTCCGAGTCAAT
Found at i:21331507 original size:26 final size:26
Alignment explanation
Indices: 21331466--21331518 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21331456 CCGATCCGAT
21331466 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
21331492 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTTCGTATG
21331518 C
1 C
21331519 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:21332227 original size:26 final size:26
Alignment explanation
Indices: 21332189--21332241 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21332179 GGCTCAAACT
21332189 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
21332215 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
21332241 C
1 C
21332242 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21332582 original size:26 final size:26
Alignment explanation
Indices: 21332532--21332584 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21332522 CTGGTTCGAT
*
21332532 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
* * *
21332558 CTTAGACTGGGGATGTACACTGTATG
1 CTTAGACTGGGAATGAACACCGTATG
21332584 C
1 C
21332585 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:21332692 original size:12 final size:12
Alignment explanation
Indices: 21332675--21332704 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
21332665 CCTCCCTGCG
21332675 TGCTGTTGATCC
1 TGCTGTTGATCC
*
21332687 TGCTGTTGGTCC
1 TGCTGTTGATCC
21332699 TGCTGT
1 TGCTGT
21332705 CGCAACCCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.03, C:0.23, G:0.30, T:0.43
Consensus pattern (12 bp):
TGCTGTTGATCC
Found at i:21333602 original size:159 final size:157
Alignment explanation
Indices: 21333272--21333634 Score: 376
Period size: 159 Copynumber: 2.3 Consensus size: 157
21333262 AACTCCATAT
* * ** *
21333272 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCAAAAAATGAGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCACTAAG
* * *
21333337 CCGACGAAGAGGTAGAATGCGTAAGCCGAGATCTGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
66 CCGACGAAGAGGCAGAATGCGTAAGCCGAGATCTGACCCGATCCCCCCTGCGTGCTGTCGATCCC
**
21333402 GCTACCGTAACCCTCGGTCCAAACCGA
131 GCTACCACAACCCTCGGTCCAAACCGA
* * * * * *
21333429 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAAACCACAAAACAAGCGTGCGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCACTAA
* * * * * * *
21333493 GCCGGTCGGAGAGGCATAATGCGTACGCCGAGGATC-GGCCCGATCCTCCTCTGCGTGTTGTC-A
65 GCC-GACGAAGAGGCAGAATGCGTAAGCCGA-GATCTGACCCGATCC-CCCCTGCGTGCTGTCGA
* * * *
21333556 GTCCCGCTGCCACAACCCTCGGTCC-GACTGGG
127 -TCCCGCTACCACAACCCTCGGTCCAAAC-CGA
*
21333588 GCTTAGACATGGAATGAACTCTC-TATGCTTAAGCCAACCCACAAAAC
1 GCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACAAAAC
21333635 GGGCATGCAA
Statistics
Matches: 166, Mismatches: 32, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
156 1 0.01
157 54 0.33
158 33 0.20
159 76 0.46
160 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCACTAAG
CCGACGAAGAGGCAGAATGCGTAAGCCGAGATCTGACCCGATCCCCCCTGCGTGCTGTCGATCCC
GCTACCACAACCCTCGGTCCAAACCGA
Found at i:21333788 original size:26 final size:26
Alignment explanation
Indices: 21333747--21333799 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21333737 CCGGTCCGAT
*
21333747 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21333773 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
21333799 C
1 C
21333800 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21334505 original size:26 final size:26
Alignment explanation
Indices: 21334467--21334519 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21334457 GGCTCAAACT
*
21334467 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21334493 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21334519 C
1 C
21334520 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21334781 original size:158 final size:158
Alignment explanation
Indices: 21334492--21334795 Score: 396
Period size: 158 Copynumber: 1.9 Consensus size: 158
21334482 AACTCTGTAT
* * **
21334492 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGACCACTCAG
* * * * * *
21334557 CTGACCGAAAAGGCATAATGCTAAGCCGAGGATCGACCCAGTCCCCCTCTGTGTGCTACCGGTCC
66 CCGACCGAAAAGGCAGAATGCCAAGCAGAGGATCGACCCAGTCCCCCTCTGCGTGCTACCGATCC
*
21334622 TGCTGCCATAACCCTCGGTCTGGCTGGG
131 TGCTGCCACAACCCTCGGTCTGGCTGGG
* * *
21334650 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGACCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGACCACTCAG
* * * * *
21334715 CCGACCGAAGAGGCAGAATGCGCAAGCAGGGGATTGGCCC-GATCCCCC-CTGCGTGCTATCGAT
66 CCGACCGAAAAGGCAGAATGC-CAAGCAGAGGATCGACCCAG-TCCCCCTCTGCGTGCTACCGAT
*
21334778 CCTGCTGCCGCAACCCTC
129 CCTGCTGCCACAACCCTC
21334796 AATCCGATTT
Statistics
Matches: 124, Mismatches: 20, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
158 105 0.85
159 19 0.15
ACGTcount: A:0.23, C:0.33, G:0.27, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGACCACTCAG
CCGACCGAAAAGGCAGAATGCCAAGCAGAGGATCGACCCAGTCCCCCTCTGCGTGCTACCGATCC
TGCTGCCACAACCCTCGGTCTGGCTGGG
Found at i:21334813 original size:158 final size:158
Alignment explanation
Indices: 21334492--21334835 Score: 379
Period size: 158 Copynumber: 2.2 Consensus size: 158
21334482 AACTCTGTAT
* **
21334492 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGACCACTCAG
* * * * * *
21334557 CTGACCGAAAAGGCATAATGCTAAGCCGAGGATCGACCCAGTCCCCCTCTGTGTGCTACCGGTCC
66 CCGACCGAAAAGGCAGAATGCCAAGCAGAGGATCGACCCAGTCCCCCTCTGCGTGCTACCGATCC
* ** * * *
21334622 TGCTGCCATAACCCTCGGTCTGGCTGGG
131 TGCTGCCACAACCCTCAATCCGACTGGA
* * * *
21334650 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGACCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGACCACTCAG
* * * * *
21334715 CCGACCGAAGAGGCAGAATGCGCAAGCAGGGGATTGGCCC-GATCCCCC-CTGCGTGCTATCGAT
66 CCGACCGAAAAGGCAGAATGC-CAAGCAGAGGATCGACCCAG-TCCCCCTCTGCGTGCTACCGAT
* * *
21334778 CCTGCTGCCGCAACCCTCAATCCGATTTGA
129 CCTGCTGCCACAACCCTCAATCCGACTGGA
* *
21334808 TCTTAGA-TTAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
21334836 TTAGACTGGG
Statistics
Matches: 153, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
157 1 0.01
158 133 0.87
159 19 0.12
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGACCACTCAG
CCGACCGAAAAGGCAGAATGCCAAGCAGAGGATCGACCCAGTCCCCCTCTGCGTGCTACCGATCC
TGCTGCCACAACCCTCAATCCGACTGGA
Found at i:21334838 original size:26 final size:26
Alignment explanation
Indices: 21334809--21334861 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21334799 CCGATTTGAT
* *
21334809 CTTAGATTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
21334835 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
21334861 C
1 C
21334862 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:21335243 original size:26 final size:26
Alignment explanation
Indices: 21335202--21335254 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21335192 CCGGTTTGAT
*
21335202 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
21335228 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21335254 C
1 C
21335255 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21335396 original size:393 final size:393
Alignment explanation
Indices: 21334650--21335622 Score: 1268
Period size: 393 Copynumber: 2.5 Consensus size: 393
21334640 TCTGGCTGGG
** * *
21334650 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGACCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGACCACTCAA
* * * *
21334715 CCGACCGAAGAGGCAGAATGCGCAAGCAGGGGATTGGCCCGATCCCCCCTGCGTGCTATCGATCC
66 CCGACCGAAGAGGCAGAATACGCAAGCAGAGGATTGGCCCGATCCCCCCTCCGTGCTACCGATCC
* *
21334780 TGCTGCCGCAACCCTCAATCCGATTTGATCTTAGATTAGGAATGAACTCCGTATGCTTAGACTGG
131 TGCAGCCGCAACCCTCAATCCGATTTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGG
*
21334845 GGATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCCTGCAGGCGCTCAGCCGATCGGAGA
196 GGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCCTGCAGGCGCTCAGCCGATCGGAGA
* * * ** *
21334910 GGCCGATCAAAGAGGTAGAATGCGCAAGTCAGGGATCGGCCTGATCCCCCCTACGTGCTGTCGAT
261 GGCCGATCAAAGAGGTAGAATGCACAAGCCAAGGATCAACCCGATCCCCCCTACGTGCTGTCGAT
* * *
21334975 CTTGCTACTGGTCCTATTGCCATAACCCTCGGTTCGATCCAATCTTAGACTGGGAATGAACTCCG
326 CCTGCTACTGGTCCTACTGCCATAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCG
21335040 TAT
391 TAT
* * *
21335043 GCTTAAACGTGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGACCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGACCACTCAA
**
21335108 CCG-GTGAAAGAGGCAGAATACGCAAGCCA-AGGATTGGCCCGATCCCCCCTCCGTGCTACCGAT
66 CCGACCG-AAGAGGCAGAATACGCAAG-CAGAGGATTGGCCCGATCCCCCCTCCGTGCTACCGAT
* * *
21335171 CCTGCAGCCGCAACCCTCGATCCGGTTTGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACT
129 CCTGCAGCCGCAACCCTCAATCCGATTTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
* * * * * * *
21335236 GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCCGTCGGTCGGA
194 GGGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCCTGCAGGCGCTCAGCCGATCGGA
* * * *
21335301 GGGGCCGGTCAAAGAGGTAGAATGCACAAGCCAAGGATCAACCCGGTCCCCCCTATGTGCTGTCG
259 GAGGCCGATCAAAGAGGTAGAATGCACAAGCCAAGGATCAACCCGATCCCCCCTACGTGCTGTCG
* * *
21335366 ATCCTGCTACTGGTCCTGCTGCCGTAACCCTCGGTCCGATCCAATCTTAGATTGGGAATGAACTC
324 ATCCTGCTACTGGTCCTACTGCCATAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTC
21335431 CGTAT
389 CGTAT
* * * * * **** *
21335436 GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGACCACTCAA
* * * * * * * * * * **
21335501 CCGACCGGAGATGTAGAATGCTCAAGCCGGGGACTGACCCGATCCCTCCCTGCGTGCTATTGATC
66 CCGACCGAAGAGGCAGAATACGCAAGCAGAGGATTGGCCCGATCCC-CCCTCCGTGCTACCGATC
* *** *
21335566 CTGCTA-TCGCAACCCTCAATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGC
130 CTGC-AGCCGCAACCCTCAATCCGATTTGATCTTAGACTAGGAATGAACTCCGTATGC
21335623 CTAAGTCAAC
Statistics
Matches: 497, Mismatches: 77, Indels: 11
0.85 0.13 0.02
Matches are distributed among these distances:
392 2 0.00
393 429 0.86
394 65 0.13
395 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (393 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGACCACTCAA
CCGACCGAAGAGGCAGAATACGCAAGCAGAGGATTGGCCCGATCCCCCCTCCGTGCTACCGATCC
TGCAGCCGCAACCCTCAATCCGATTTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGG
GGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCCTGCAGGCGCTCAGCCGATCGGAGA
GGCCGATCAAAGAGGTAGAATGCACAAGCCAAGGATCAACCCGATCCCCCCTACGTGCTGTCGAT
CCTGCTACTGGTCCTACTGCCATAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCG
TAT
Found at i:21335713 original size:159 final size:158
Alignment explanation
Indices: 21335437--21335939 Score: 437
Period size: 159 Copynumber: 3.2 Consensus size: 158
21335427 ACTCCGTATG
* * * *
21335437 CTTAGACAT-GGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGT-GGGTGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT-TCGGGAGCTCA
* * * * * * *
21335500 GCCGACCGGAGATGTAGAATGCTCAAGCCGGGGACTGA-CCCGATCCCTCC-CTGCGTGCTATTG
64 GCCAATCGGAGAGGCAGAATGCACAAGCCGGGG-CTCAGCCCG-TCCC-CCTCTGCGTGCTATCG
* * *
21335563 ATCCTGCTATCGCAACCCTCAATCCGATCCAAT
126 ATCCTGCTGTCGCAACCCTCGATCCGATCCGAT
* *
21335596 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGAGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGAGCTCAGC
* *
21335661 CAATCGGAGAGGCATAATGCACAAGTCGGGGCTCAGCCCAGTCCCCCTCTGCGTGCTATCGATCC
66 CAATCGGAGAGGCAGAATGCACAAGCCGGGGCTCAGCCC-GTCCCCCTCTGCGTGCTATCGATCC
* * * * **
21335726 CGCTGCCACAACCCTCGATCCGA-CTGGGG
130 TGCTGTCGCAACCCTCGATCCGATC-CGAT
* * * * * *
21335755 CTTAGA-TATGGAATGACCTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCCTGCGGGCGCTCA
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTTCGGGAGCTCA
* * * ** * * * * * *
21335818 GCCAGTCGAAGAGGCAGAATGCGCAAGCCGAAGATCAGCCTGGTTCCTCT-TGTGTGCTACCGAT
64 GCCAATCGGAGAGGCAGAATGCACAAGCCGGGGCTCAGCC-CGTCCCCCTCTGCGTGCTATCGAT
* * * *
21335882 GCTGCTGTCGCAACCCTCGGTCCGGTCTGAT
128 CCTGCTGTCGCAACCCTCGATCCGATCCGAT
* *
21335913 CTTAAACTGGGAATAAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
21335940 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 59, Indels: 23
0.77 0.17 0.06
Matches are distributed among these distances:
158 62 0.23
159 211 0.77
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGAGCTCAGC
CAATCGGAGAGGCAGAATGCACAAGCCGGGGCTCAGCCCGTCCCCCTCTGCGTGCTATCGATCCT
GCTGTCGCAACCCTCGATCCGATCCGAT
Found at i:21335942 original size:26 final size:26
Alignment explanation
Indices: 21335913--21335965 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21335903 CCGGTCTGAT
21335913 CTTAAACTGGGAATAAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
* * *
21335939 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
21335965 C
1 C
21335966 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCCGTATG
Found at i:21336253 original size:354 final size:343
Alignment explanation
Indices: 21335596--21336394 Score: 879
Period size: 354 Copynumber: 2.3 Consensus size: 343
21335586 CCGATCCAAT
* * *
21335596 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGAGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGC
** * * *
21335661 CAATCGGAGAGGCATAATGCACAAGTCGGGGCTCAGCCCAGTCCCCCTCTGCGTGCTATCGATCC
66 CGGTCGGAGAGGCATAATGCACAAGCCGAGGATCAGCCCAGTCCCCCTCTGCGTGCTATCGATCC
* * * *
21335726 CGCTGCCACAACCCTCGATCCGACTGGGGCTTAGATATGGAATGACCTCCCTATGCCTAAGCCAA
131 CGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGCAATGAACTCCATATGCCTAAGCCAA
* * *
21335791 CCCATGAAACAGGCCTGCGGGCGCTCAGCCAGTCGAAGAGGCAGAATGCGCAAGCCGAAGATCAG
196 CCAATGAAACAAGCCTACGGGCGCTCAGCCAGTCGAAGAGGCAGAATGCGCAAGCCGAAGATCAG
* * * ** * ** * * *
21335856 CCTGGTTCCTCTTGTGTGCTACCGATGCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAAACT
261 CCTGGTCCCCCATGCATGCTACCGATCCTGCTACCGCAACCCTCGGTCCAGTCCGATCATAAACT
21335921 GGGAATAAACTCCGTATG
326 GGGAATAAACTCCGTATG
* * * *
21335939 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCATGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGC
* * * * *
21336004 CGGTCGAAGAGGCATAATGCACAAGCCGAGGATCATCCCGGTCCCCCTGTGCGTGCTGTCGATCT
66 CGGTCGGAGAGGCATAATGCACAAGCCGAGGATCAGCCCAGTCCCCCTCTGCGTGCTATCGA--T
* *
21336069 CGCTGCCGGTCTTGCTGCACAACCCTCGGTCC-AGCTGGGGCTTAGACATGCAATGAACTTCATA
129 --C--CC-G-C-TGC--CACAACCCTCGATCCGA-CTGGGGCTTAGACATGCAATGAACTCCATA
** * * * *
21336133 TGCCTAAGCCAACCAATGAAACAAGTGTACGGGTGCTCAGTC-GGCTGGAGAGGCAGAATGCGCA
184 TGCCTAAGCCAACCAATGAAACAAGCCTACGGGCGCTCAGCCAGTC-GAAGAGGCAGAATGCGCA
* * * *
21336197 AGTCGAGGATC-GACC-GGTCCCCCCATGCATGCTACCGATCCTGTTACCGTAACCCTCGGTCCA
248 AGCCGAAGATCAG-CCTGGT-CCCCCATGCATGCTACCGATCCTGCTACCGCAACCCTCGGTCCA
* * **
21336260 GTCCGATCATAGACTGGGAATGAACTTTGTATG
311 GTCCGATCATAAACTGGGAATAAACTCCGTATG
* * * *
21336293 CTTAGACAT-GGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGTGTGTGGGCGCTTAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAG
* * * * *
21336357 CCGGTTGGAGAGGCAGAATGCGCAAGCCGGGGACCAGC
65 CCGGTCGGAGAGGCATAATGCACAAGCCGAGGATCAGC
21336395 TCGATCCCTC
Statistics
Matches: 374, Mismatches: 66, Indels: 21
0.81 0.14 0.05
Matches are distributed among these distances:
343 110 0.29
345 1 0.00
347 1 0.00
349 2 0.01
350 1 0.00
351 1 0.00
352 3 0.01
353 7 0.02
354 247 0.66
355 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (343 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGC
CGGTCGGAGAGGCATAATGCACAAGCCGAGGATCAGCCCAGTCCCCCTCTGCGTGCTATCGATCC
CGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGCAATGAACTCCATATGCCTAAGCCAA
CCAATGAAACAAGCCTACGGGCGCTCAGCCAGTCGAAGAGGCAGAATGCGCAAGCCGAAGATCAG
CCTGGTCCCCCATGCATGCTACCGATCCTGCTACCGCAACCCTCGGTCCAGTCCGATCATAAACT
GGGAATAAACTCCGTATG
Found at i:21336422 original size:184 final size:184
Alignment explanation
Indices: 21336108--21336573 Score: 488
Period size: 184 Copynumber: 2.5 Consensus size: 184
21336098 TCCAGCTGGG
* * * * * *
21336108 GCTTAGACATGCAATGAACTTCATATGCCTAAGCCAACCAATGAAACAAGTGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
* * * * *
21336173 TCGGCTGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCGGTCCCCCCATGCATGCTACCGATCC
66 TCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCGATCCCCCCATGCATACTACCGATCC
** * * * **
21336238 TGTTACCGTAACCCTCGGTCCAGTCCGATCATAGACTGGGAATGAACTTTGTAT
131 TACTACCGCAACCCTCGATCCAGTCCAATCATAGACTGGGAATGAACTCCGTAT
* * * *
21336292 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGTGTGTGGGCGCTTAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
* * * * * **
21336357 CCGGTTGGAGAGGCAGAATGCGCAAGCCGGGGACC-AGCTCGATCCCTCC-TTCCTACTGTCGAT
66 TCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGACCGA-C-CGATCCCCCCATGCATACTACCGAT
* ** * *
21336420 CCTACTGCCGCAACCCTCGATCTGGTCTAATCTTAGACTGGGAATGAACTCCGTAT
129 CCTACTACCGCAACCCTCGATCCAGTCCAATCATAGACTGGGAATGAACTCCGTAT
* * * * * *
21336476 GCTTAGAC-TGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGACGCTCA
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCA
* ** *
21336540 GTCGACCAGAGAGGCAGGATGCGCAAGCCGGGGA
65 GTCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGA
21336574 TCAAACAACA
Statistics
Matches: 229, Mismatches: 50, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
183 2 0.01
184 219 0.96
185 8 0.03
ACGTcount: A:0.26, C:0.27, G:0.27, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
TCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCGATCCCCCCATGCATACTACCGATCC
TACTACCGCAACCCTCGATCCAGTCCAATCATAGACTGGGAATGAACTCCGTAT
Found at i:21336487 original size:26 final size:26
Alignment explanation
Indices: 21336451--21336503 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21336441 CTGGTCTAAT
21336451 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21336477 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21336503 C
1 C
21336504 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21337517 original size:26 final size:26
Alignment explanation
Indices: 21337481--21337539 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
21337471 CTCGGTCCGG
21337481 TTCG-ATG-TTAGACTGGGAATGAAC
1 TTCGTATGCTTAGACTGGGAATGAAC
*
21337505 TTCGTATGCTTAGACTGGGGATGAAC
1 TTCGTATGCTTAGACTGGGAATGAAC
21337531 TTCGTATGC
1 TTCGTATGC
21337540 CTAAGTTAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 25 0.78
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (26 bp):
TTCGTATGCTTAGACTGGGAATGAAC
Found at i:21338017 original size:159 final size:158
Alignment explanation
Indices: 21337734--21338218 Score: 485
Period size: 159 Copynumber: 3.1 Consensus size: 158
21337724 TTAGACATGT
* * * *
21337734 AATGAACTCTGTATGCTTAAGCCAGCCCATGGAACGAGCGTACGGGCGCTCAACCGATCGGAGAG
1 AATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGCTCAACCGATCGGAGAG
* * * * *
21337799 GTAGAATGCATAAGCCGAGGA-CTGACCCAATCCCCACCTACGTGCTGTCGATCCTGCTGCCGCA
66 GTAGAATGCACAAGCCGAGGATC-GGCCCAGTCCCC-CCTGCGTGCTGTCGATCCTGCTGCCGTA
21337863 ACCCTCGGTCCAGTATGATCTTAGACTAGG
129 ACCCTCGGTCCAGTATGATCTTAGACTAGG
* * * * * * *
21337893 AATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGCGCTGAGCTGACCGGAGAG
1 AATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGCTCAACCGATCGGAGAG
* * * * * * *
21337958 GAATAATGCACAAGTCGAGGATCGGCCCAGTCCCCCTCTGCATGCTGTCGGTCCCGCTGCCATAA
66 GTAGAATGCACAAGCCGAGGATCGGCCCAGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCCGTAA
* * **
21338023 CCCTCGAT-CTG-ACTGGGGCTTAGAC-ATGG
130 CCCTCGGTCCAGTA-T-GATCTTAGACTA-GG
** * * *
21338052 AATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGT-GGGCACTCAACCGATCGGAGA
1 AATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGT-TCGGGCGCTCAACCGATCGGAGA
* ** * ** * *
21338116 GGTCGAATGTGCAAGCCGAGGATCGGCCCGGTCCTTCCTGCGTGCTGTCGATCTTACTGCCGTAA
65 GGTAGAATGCACAAGCCGAGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGTAA
* * *
21338181 CCCTCGGTCCAGTCTGTTCTTAGACTGGG
130 CCCTCGGTCCAGTATGATCTTAGACTAGG
21338210 AATGAACTC
1 AATGAACTC
21338219 CATATGCTTA
Statistics
Matches: 257, Mismatches: 60, Indels: 19
0.76 0.18 0.06
Matches are distributed among these distances:
157 1 0.00
158 53 0.21
159 201 0.78
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
AATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGCTCAACCGATCGGAGAG
GTAGAATGCACAAGCCGAGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGTAAC
CCTCGGTCCAGTATGATCTTAGACTAGG
Found at i:21338228 original size:26 final size:26
Alignment explanation
Indices: 21338199--21338251 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21338189 CCAGTCTGTT
21338199 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21338225 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21338251 C
1 C
21338252 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21338959 original size:26 final size:26
Alignment explanation
Indices: 21338921--21338973 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21338911 GGCTCAAAAT
21338921 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21338947 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21338973 C
1 C
21338974 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21344237 original size:26 final size:26
Alignment explanation
Indices: 21344201--21344253 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21344191 CCGGTTCGAT
*
21344201 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21344227 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21344253 C
1 C
21344254 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21344398 original size:26 final size:26
Alignment explanation
Indices: 21344369--21344421 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21344359 CCGGTCTGAT
21344369 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21344395 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21344421 C
1 C
21344422 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21344884 original size:158 final size:161
Alignment explanation
Indices: 21344518--21344897 Score: 355
Period size: 160 Copynumber: 2.4 Consensus size: 161
21344508 TACATGCTGT
* * *
21344518 CGATCCTACTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGC-ATGCCT
1 CGATCCTGCTGTCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCC-CTATGCCT
* * * * * * *
21344582 AAGTCAACCTACGAAATGAGCGTTCGTGCACTGACCGGCCGGAGAGGCATAATACACAAGCCGAG
65 AAGCCAACCCACGAAACGAGCGTGCGGGCACTCACCGGCCGGAGAGGCAGAATACACAAGCCGAG
* *
21344647 GATGGAATGAACTCTTCTCTCTGCGTGCTACC
130 GATGGAACGAACTCTTCTCTCAGCGTGCTACC
* * * * **
21344679 CG-TCCCGCTGCCACAACCCTCGATTCGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCC
1 CGATCCTGCTGTCGCAACCCTCGGTTCGGTCT-GATCTTAGAC-TGGGAATGAACTCCCTATGCC
* * * * * * *
21344741 TAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCTGGCCGGATAGGTAGAATGCACAAGCCG
64 TAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA-CCGGCCGGAGAGGCAGAATACACAAGCCG
* ** ***
21344806 GGGATCGGCCCG-A-TCTTC-C-CAGCGT-CTTGT
128 AGGAT-GGAACGAACTCTTCTCTCAGCGTGCTACC
* *
21344836 TGATCCTGCTGTCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 CGATCCTGCTGTCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCCTATGC
21344898 TTAGACTGGG
Statistics
Matches: 172, Mismatches: 39, Indels: 19
0.75 0.17 0.08
Matches are distributed among these distances:
157 4 0.02
158 52 0.30
159 5 0.03
160 76 0.44
161 32 0.19
162 3 0.02
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (161 bp):
CGATCCTGCTGTCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTA
AGCCAACCCACGAAACGAGCGTGCGGGCACTCACCGGCCGGAGAGGCAGAATACACAAGCCGAGG
ATGGAACGAACTCTTCTCTCAGCGTGCTACC
Found at i:21344922 original size:26 final size:26
Alignment explanation
Indices: 21344871--21344923 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21344861 TCGGTCTGAT
*
21344871 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21344897 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21344923 C
1 C
21344924 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21345288 original size:26 final size:26
Alignment explanation
Indices: 21345250--21345302 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21345240 CCGGTCCGAT
*
21345250 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
21345276 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
21345302 C
1 C
21345303 CCAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:21345419 original size:196 final size:196
Alignment explanation
Indices: 21345079--21345863 Score: 923
Period size: 196 Copynumber: 4.0 Consensus size: 196
21345069 TCTGGCTGGG
* * * *
21345079 GCTTAGACAGGGAATGATCTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* ** * * * * * *
21345144 CCGATCGGTGAGGCAGAATATGCAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTGTCAATCC
66 CCGACCGAAGAGGCAGAATACGCAAGTCAGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
* * * * *
21345209 TGCTGCTAGTCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATAAACT-TCGT
131 TGCTGCTGGTCCTGCTGCCGGAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCT-GT
21345273 AT
195 AT
* * *
21345275 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * *** *
21345340 TCGGCCGAAGAGGCAGAATGCGTAAGTCAGGGA-CTGACCCGGTCTGTCTTACGTGCTGTCGATC
66 CCGACCGAAGAGGCAGAATACGCAAGTCAGGGATC-GACCCGATCCCCCCTACGTGCTGTCGATC
* * * * * *
21345404 CTGCTGCTGGTCCTGCTGCCGTAACCTTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCTGT
130 CTGCTGCTGGTCCTGCTGCCGGAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGT
21345469 AT
195 AT
* * * * *
21345471 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCAAACTCACGAAACGAGCATGC-GGCTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGC-GCTCA
* * * * *
21345535 GCCGACCG-AGAGGTAGAACACGCAAGTCAGGGATCGACCTGGTACCCCCTACGTGCTGTCGATC
65 GCCGACCGAAGAGGCAGAATACGCAAGTCAGGGATCGACCCGATCCCCCCTACGTGCTGTCGATC
* * *
21345599 CTGCTGCTGGTCCTGCTGTCGGAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGT
130 CTGCTGCTGGTCCTGCTGCCGGAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGT
21345664 AT
195 AT
* *
21345666 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* ** * * * * *
21345731 CCGGCCGAAGAGGCAGAATGTGCAA-TCTGGGGACCGACCCGATCCCCCTTGCGTGTTGTCGATC
66 CCGACCGAAGAGGCAGAATACGCAAGTC-AGGGATCGACCCGATCCCCCCTACGTGCTGTCGATC
* * * * *
21345795 CTGCTACTGGTCCTGTTGCCGGAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGT
130 CTGCTGCTGGTCCTGCTGCCGGAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGT
21345860 AT
195 AT
21345862 GC
1 GC
21345864 CTAAGCCAAC
Statistics
Matches: 496, Mismatches: 86, Indels: 14
0.83 0.14 0.02
Matches are distributed among these distances:
195 169 0.34
196 326 0.66
197 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGACCGAAGAGGCAGAATACGCAAGTCAGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
TGCTGCTGGTCCTGCTGCCGGAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTA
T
Found at i:21345652 original size:391 final size:392
Alignment explanation
Indices: 21345079--21345863 Score: 1029
Period size: 391 Copynumber: 2.0 Consensus size: 392
21345069 TCTGGCTGGG
* * * * *
21345079 GCTTAGACAGGGAATGATCTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAG
1 GCTTAAACAGGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCATACGAGCGCTCAG
* * * * * * *
21345144 CCGATCGGTGAGGCAGAATATGCAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTGTCAATCC
66 CCGATCCGAGAGGCAGAACACGCAAGCCAGGGATCAACCCGATACCCCCTACGTGCTGTCAATCC
* *
21345209 TGCTGCTAGTCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATAAACT-TCGT
131 TGCTGCTAGTCCTGCTACCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATAAACTCT-GT
* * *
21345273 ATGCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC
195 ATGCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCAAGAAACGAGCGTACGGGCGCTC
* * * * ***
21345338 AGTCGGCCGAAGAGGCAGAATGCGTAAGTC-AGGGACTGACCCGGTCTGTCTTACGTGCTGTCGA
260 AGCCGGCCGAAGAGGCAGAATGCGCAA-TCTAGGGACCGACCCGATCCCCCTTACGTGCTGTCGA
* * * * ** *
21345402 TCCTGCTGCTGGTCCTGCTGCCGTAACCTTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCT
324 TCCTGCTACTGGTCCTGCTGCCGGAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCC
21345467 GTAT
389 GTAT
* * *
21345471 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCAAACTCACGAAACGAGCATGCG-GCTGCTCA
1 GCTTAAACAGGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCATACGAGC-GCTCA
* * * * * *
21345535 GCCGA-CCGAGAGGTAGAACACGCAAGTCAGGGATCGACCTGGTACCCCCTACGTGCTGTCGATC
65 GCCGATCCGAGAGGCAGAACACGCAAGCCAGGGATCAACCCGATACCCCCTACGTGCTGTCAATC
* ** * * *
21345599 CTGCTGCTGGTCCTGCTGTCGGAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGT
130 CTGCTGCTAGTCCTGCTACCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATAAACTCTGT
* *
21345664 ATGCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCGCTC
195 ATGCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCAAGAAACGAGCGTACGGGCGCTC
* * * *
21345729 AGCCGGCCGAAGAGGCAGAATGTGCAATCTGGGGACCGACCCGATCCCCCTTGCGTGTTGTCGAT
260 AGCCGGCCGAAGAGGCAGAATGCGCAATCTAGGGACCGACCCGATCCCCCTTACGTGCTGTCGAT
* *
21345794 CCTGCTACTGGTCCTGTTGCCGGAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCG
325 CCTGCTACTGGTCCTGCTGCCGGAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCG
21345859 TAT
390 TAT
21345862 GC
1 GC
21345864 CTAAGCCAAC
Statistics
Matches: 336, Mismatches: 54, Indels: 7
0.85 0.14 0.02
Matches are distributed among these distances:
390 2 0.01
391 275 0.82
392 59 0.18
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (392 bp):
GCTTAAACAGGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCATACGAGCGCTCAG
CCGATCCGAGAGGCAGAACACGCAAGCCAGGGATCAACCCGATACCCCCTACGTGCTGTCAATCC
TGCTGCTAGTCCTGCTACCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATAAACTCTGTA
TGCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCA
GCCGGCCGAAGAGGCAGAATGCGCAATCTAGGGACCGACCCGATCCCCCTTACGTGCTGTCGATC
CTGCTACTGGTCCTGCTGCCGGAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGT
AT
Found at i:21345670 original size:26 final size:26
Alignment explanation
Indices: 21345641--21345693 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21345631 CCAGTCTGAT
*
21345641 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
21345667 CTTAGGCATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21345693 C
1 C
21345694 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21346190 original size:26 final size:26
Alignment explanation
Indices: 21346154--21346206 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21346144 CCAGTCTGAT
21346154 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
* *
21346180 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
21346206 C
1 C
21346207 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:21347102 original size:26 final size:26
Alignment explanation
Indices: 21347061--21347113 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21347051 TCAATCTAAT
21347061 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
21347087 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21347113 C
1 C
21347114 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21347389 original size:171 final size:170
Alignment explanation
Indices: 21347181--21347572 Score: 459
Period size: 171 Copynumber: 2.3 Consensus size: 170
21347171 CGAAAGTCGA
* * * *
21347181 GGATCAGCTCG-ATCCCCCTCTGTGTGCTGCTGATCCCGCTGTCGGTCCTGCTACCACAACCCTT
1 GGATCAGCTTGAACCCCCCT-TGCGTGCTG-TGATCCCGCTGTCGGTCCTGCTACCACAACCCTC
* * * * *
21347245 GGTCCGGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAACCCAACCCACGAAACGAGCGT
64 AGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAACCCAACCCACAAAACGAGCGT
* *
21347310 GCTA-GCACTCAATTGACCAGAGAGGCAGAATGTGCAAGCC-G
129 G-TAGGCACTCAATCGACCAGAGAGGCAGAATGCGCAAGCCAG
* ** * *
21347351 AGGATC-GGTTCGAACCCCTTTTGCGTGCTGTAGATCCCGCTGCCAGTCCTGCTACCACAACCCT
1 -GGATCAGCTT-GAACCCCCCTTGCGTGCTGT-GATCCCGCTGTCGGTCCTGCTACCACAACCCT
* *
21347415 CAGTCTGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCG
63 CAGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAACCCAACCCACAAAACGAGCG
* * * *
21347480 TGTAGGCGCTCAGTCGATCGGAGAGGCAGAATGCGCAAGCCAG
128 TGTAGGCACTCAATCGACCAGAGAGGCAGAATGCGCAAGCCAG
** * *
21347523 GGATCAGCTTGGTCCCCCCTTGCGTGCTGTCGATCCTGCTGTTGGTCCTG
1 GGATCAGCTTGAACCCCCCTTGCGTGCTGT-GATCCCGCTGTCGGTCCTG
21347573 TTGCCGTAAC
Statistics
Matches: 183, Mismatches: 32, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
170 5 0.03
171 169 0.92
172 9 0.05
ACGTcount: A:0.21, C:0.31, G:0.27, T:0.21
Consensus pattern (170 bp):
GGATCAGCTTGAACCCCCCTTGCGTGCTGTGATCCCGCTGTCGGTCCTGCTACCACAACCCTCAG
TCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAACCCAACCCACAAAACGAGCGTGT
AGGCACTCAATCGACCAGAGAGGCAGAATGCGCAAGCCAG
Found at i:21347586 original size:171 final size:171
Alignment explanation
Indices: 21347086--21347563 Score: 454
Period size: 171 Copynumber: 2.8 Consensus size: 171
21347076 AACTCCGTAT
* ** * * **
21347086 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGT-GTGCTC
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAACCCAACCCACAAAACGAGCGTGC-TAGCACTC
* ** * * * * *
21347149 AA-CTAGCTGGAGAGGC-GTATTGCGAAAGTCGAGGATCAGC-TCG-ATCCCCCTCTGTGTGCTG
64 AATCGA-CCAGAGAGGCAG-AATGCGCAAGCCGAGGATC-GCTTCGAACCCCCCT-TGCGTGCTG
* * ** * * *
21347210 CT-GATCCCGCTGTCGGTCCTGCTACCACAACCCTTGGTCCGGCTGGG
125 -TAGATCCCGCTGCCAGTCCTGCTACCACAACCCTCAGTCTGACTAGG
* *
21347257 GCTTAGACATGGAATGAACTTCGTATGCCTAACCCAACCCACGAAACGAGCGTGCTAGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAACCCAACCCACAAAACGAGCGTGCTAGCACTCAA
* * * **
21347322 TTGACCAGAGAGGCAGAATGTGCAAGCCGAGGATCGGTTCGAACCCCTTTTGCGTGCTGTAGATC
66 TCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGCTTCGAACCCCCCTTGCGTGCTGTAGATC
21347387 CCGCTGCCAGTCCTGCTACCACAACCCTCAGTCTGACTAGG
131 CCGCTGCCAGTCCTGCTACCACAACCCTCAGTCTGACTAGG
* *
21347428 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTG-TAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAACCCAACCCACAAAACGAGCGTGCTA-GCACTCA
* * * ** *
21347492 GTCGATCGGAGAGGCAGAATGCGCAAGCC-AGGGATCAGCTT-GGTCCCCCCTTGCGTGCTGTCG
65 ATCGACCAGAGAGGCAGAATGCGCAAGCCGA-GGATC-GCTTCGAACCCCCCTTGCGTGCTGTAG
*
21347555 ATCCTGCTG
128 ATCCCGCTG
21347564 TTGGTCCTGT
Statistics
Matches: 254, Mismatches: 43, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
170 6 0.02
171 237 0.93
172 11 0.04
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (171 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAACCCAACCCACAAAACGAGCGTGCTAGCACTCAA
TCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGCTTCGAACCCCCCTTGCGTGCTGTAGATC
CCGCTGCCAGTCCTGCTACCACAACCCTCAGTCTGACTAGG
Found at i:21347606 original size:171 final size:171
Alignment explanation
Indices: 21347086--21347626 Score: 422
Period size: 171 Copynumber: 3.2 Consensus size: 171
21347076 AACTCCGTAT
* ** * * **
21347086 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGT-GTGCTC
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAACCCAACCCACAAAACGAGCGTGC-TAGCACTC
* ** * * * * *
21347149 AA-CTAGCTGGAGAGGC-GTATTGCGAAAGTCGAGGATCAGC-TCG-ATCCCCCTCTGTGTGCTG
64 AATCGA-CCAGAGAGGCAG-AATGCGCAAGCCGAGGATC-GCTTCGAACCCCCCT-TGCGTGCTG
* * ** * * ** *
21347210 CT-GATCCCGCTGTCGGTCCTGCTACCACAACCCTTGGTCCGGCTGGG
125 -TAGATCCCGCTGCCAGTCCTGCTACCACAACCCTCAGTCTGACCAGA
* *
21347257 GCTTAGACATGGAATGAACTTCGTATGCCTAACCCAACCCACGAAACGAGCGTGCTAGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAACCCAACCCACAAAACGAGCGTGCTAGCACTCAA
* * * **
21347322 TTGACCAGAGAGGCAGAATGTGCAAGCCGAGGATCGGTTCGAACCCCTTTTGCGTGCTGTAGATC
66 TCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGCTTCGAACCCCCCTTGCGTGCTGTAGATC
* *
21347387 CCGCTGCCAGTCCTGCTACCACAACCCTCAGTCTGACTAGG
131 CCGCTGCCAGTCCTGCTACCACAACCCTCAGTCTGACCAGA
* *
21347428 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTG-TAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAACCCAACCCACAAAACGAGCGTGCTA-GCACTCA
* * * ** *
21347492 GTCGATCGGAGAGGCAGAATGCGCAAGCC-AGGGATCAGCTT-GGTCCCCCCTTGCGTGCTGTCG
65 ATCGACCAGAGAGGCAGAATGCGCAAGCCGA-GGATC-GCTTCGAACCCCCCTTGCGTGCTGTAG
* *** * * ** *
21347555 ATCCTGCTGTTGGTCCTGTTGCCGTAACCCTCGGTCTGATCCA-A
128 ATCCCGCTGCCAGTCCTGCTACCACAACCCTCAGTCTGA-CCAGA
* *
21347599 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
21347627 TTAGCCATGG
Statistics
Matches: 303, Mismatches: 55, Indels: 24
0.79 0.14 0.06
Matches are distributed among these distances:
170 7 0.02
171 283 0.93
172 13 0.04
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (171 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAACCCAACCCACAAAACGAGCGTGCTAGCACTCAA
TCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGCTTCGAACCCCCCTTGCGTGCTGTAGATC
CCGCTGCCAGTCCTGCTACCACAACCCTCAGTCTGACCAGA
Found at i:21347629 original size:26 final size:26
Alignment explanation
Indices: 21347600--21347652 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21347590 CTGATCCAAT
*
21347600 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
21347626 CTTAGCCATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21347652 C
1 C
21347653 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21348132 original size:26 final size:26
Alignment explanation
Indices: 21348103--21348152 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
21348093 GTCTGATCTT
*
21348103 AGACTAGGAATGAACTCTGTATGCTG
1 AGACTAGGAATGAACTCCGTATGCTG
* *
21348129 AGACTGGGGATGAACTCCGTATGC
1 AGACTAGGAATGAACTCCGTATGC
21348153 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (26 bp):
AGACTAGGAATGAACTCCGTATGCTG
Found at i:21348861 original size:26 final size:26
Alignment explanation
Indices: 21348823--21348875 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21348813 GGCTCAAAAT
*
21348823 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21348849 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21348875 C
1 C
21348876 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21349421 original size:159 final size:158
Alignment explanation
Indices: 21349140--21349620 Score: 446
Period size: 159 Copynumber: 3.0 Consensus size: 158
21349130 TCGAACTTTT
* * * * * * * * * * * *
21349140 TATGCCTAAGCCAACCAATGAAACGAGTGTACGGGCGCTCAACTGGCTGAAAAGGCAGAATGCAC
1 TATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGC
* * *
21349205 AAGCCGAGGATCGACTCGATCCCCCCCTGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTG
66 AAGCCGAGGATCGGCTCGAT-CCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTG
*
21349270 GTTCGATCTTAGATTGGGAATGAACTCCG
130 GTTCGATCTTAGAATGGGAATGAACTCCG
* * *
21349299 TATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCC-AGCCGAAGAGGCATAATGCG
1 TATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGA-CCGAAGAGGCAGAATGCG
* * * * **
21349363 CAAGCCGAGGATCGGC-CTAGTCCCCCTCTGCGTGTTGTCGGTCCCGCTGCCACAACCCTCAATC
65 CAAGCCGAGGATCGGCTCGA-TCCCCC-CTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTC
* * ** *
21349427 TGGCTGGGGCTTAGACAT-GGAATGAACTCCC
128 TGGTTCGATCTTAGA-ATGGGAATGAACTCCG
* * * * * * * * *
21349458 TATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCGCTCAGCCGACCGGAGAGGTAGATTGTGC
1 TATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGC
* * * * * * * *
21349523 AAGTCGAGGATCGGCTCGATCCCCCCTACGTGCTGCCGATCCTACTGTCATAACCCTCGGTCCGA
66 AAGCCGAGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGG
* * *
21349588 TCCGATCTTAGACTGGGAATGAACTCTG
131 TTCGATCTTAGAATGGGAATGAACTCCG
21349616 TATGC
1 TATGC
21349621 TTAGACTGGG
Statistics
Matches: 251, Mismatches: 64, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
157 1 0.00
158 58 0.23
159 188 0.75
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
TATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGC
AAGCCGAGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGG
TTCGATCTTAGAATGGGAATGAACTCCG
Found at i:21349630 original size:26 final size:26
Alignment explanation
Indices: 21349594--21349646 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21349584 CCGATCCGAT
21349594 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
21349620 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
21349646 C
1 C
21349647 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:21351211 original size:26 final size:26
Alignment explanation
Indices: 21351182--21351234 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21351172 CCGGTTTGAT
*
21351182 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCATATG
21351208 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
21351234 C
1 C
21351235 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:21352078 original size:26 final size:26
Alignment explanation
Indices: 21352049--21352101 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21352039 CCGGTCTGAT
21352049 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
21352075 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21352101 C
1 C
21352102 GTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21353153 original size:159 final size:158
Alignment explanation
Indices: 21352810--21353236 Score: 393
Period size: 159 Copynumber: 2.7 Consensus size: 158
21352800 TTAGATATTA
* * * *
21352810 AATGAACACCGTATGCCTAAGCCAACGCACGAAACGAGCGTGCGGGTGCTCAACCAATCGAAAAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAACCAACCGAAAAG
* * * * **
21352875 GCAGAATGCGCAAGCCAGGGATCGACTCGGTCCCCCCTACGTGCTATCGATCTTGCTGCTGCAAC
66 GCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTACCGATCTCGCTACCACAAC
*
21352940 CCTCAGTCCGGTCTGATCTTAGACTGGG
131 CCTCAGTCCGGTCTGAGCTTAGACTGGG
* * * * * *
21352968 AATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCT-CTGAGCCGACCGAAGA
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGG-TGCTCAACCAACCGAAAA
* * *
21353032 GGCATAATGCGCAAG-TAGGGGATCGACCCGGTCCCCCTCTACGTGCTGCC-AGTCTCGCTACCA
65 GGCAGAATGCGCAAGCCA-GGGATCGACCCGGTCCCCC-CTACGTGCTACCGA-TCTCGCTACCA
*
21353095 CAACCCTC-GATCCGG-CTGGGGCTTAGACAT-GG
127 CAACCCTCAG-TCCGGTCT-GAGCTTAGAC-TGGG
* * * * * ** * * * ***
21353127 AATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGTGTGTGGGCGCTC-AGCAGGCCGGGGA
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAACCA-ACCGAAAA
* *
21353191 GGCAGAATGCGTGAA-CCAGGGATCGACCCGGTCCCCCCTGCGTGCT
65 GGCAGAATGCG-CAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCT
21353237 GTCGTAACCC
Statistics
Matches: 216, Mismatches: 42, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
157 1 0.00
158 97 0.45
159 114 0.53
160 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (158 bp):
AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAACCAACCGAAAAG
GCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTACCGATCTCGCTACCACAAC
CCTCAGTCCGGTCTGAGCTTAGACTGGG
Found at i:21353313 original size:26 final size:26
Alignment explanation
Indices: 21353262--21353314 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21353252 CCGATCCGAT
* *
21353262 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21353288 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21353314 C
1 C
21353315 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21353936 original size:26 final size:26
Alignment explanation
Indices: 21353907--21353959 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21353897 CCGATTCGAT
21353907 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* * * *
21353933 CTTAGGCTGGGGATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
21353959 C
1 C
21353960 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Done.