Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 204 of 402
Found at i:21354140 original size:26 final size:26
Alignment explanation
Indices: 21354104--21354156 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21354094 CCGATCCGAT
*
21354104 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21354130 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21354156 C
1 C
21354157 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21354227 original size:197 final size:196
Alignment explanation
Indices: 21353887--21354464 Score: 735
Period size: 197 Copynumber: 2.9 Consensus size: 196
21353877 TTGCTGTCGT
* *
21353887 AACCCTCGGTCCGATTCGATCTTAGACAGGGAATGAACTCCGTATGCTTAGGCTGGGGATGAACT
1 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGGGATGAACT
* * *
21353952 CTGTATGCCTATGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGTAGAATG
66 CCGTATGCCTAAGTCAACCCA-AAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATG
* * * * * *
21354017 CGCAAGTCGGGGATCGGCCCGGTCCCTCCCTGCGTGCTACCGATCCTGCTGCTGGTCCCGTTGCC
130 CGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGCATGCTACCGATCCTGCTGCTGGCCCCGCTACC
21354082 GC
195 GC
*
21354084 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGGCTGGGGATGAACT
1 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGGGATGAACT
* * * * *
21354149 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAGCCGGCTGGATAGGCAGAATG
66 CCGTATGCCTAAGTCAACCCA-AAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATG
* * *
21354214 CGCAAGCCGGGGATCGGCCCGATCCCCCCCTGCATGCTACCGATCCGGCTGCTGGCCCCGCTATC
130 CGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGCATGCTACCGATCCTGCTGCTGGCCCCGCTACC
21354279 GC
195 GC
* * * * * * * *
21354281 AACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATTAAC
1 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGC-TGGGGATGAAC
* * * * * *
21354345 TCCGTGTGCCTAAGCCAACCCACAGAACAAGCGTGTGGGTGCTCAGCCGACCGGAGAGGCAGAAT
65 TCCGTATGCCTAAGTCAACCCA-AAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAAT
* * * * * ** *
21354410 GCCCAAGCCAGGGACCGGCTCGGTCCCCCCCTACATGCTGTCGATCCTGTTGCTG
129 GCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGCATGCTACCGATCCTGCTGCTG
21354465 TAACCCTCAG
Statistics
Matches: 328, Mismatches: 52, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
197 327 1.00
198 1 0.00
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.20
Consensus pattern (196 bp):
AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGGGATGAACT
CCGTATGCCTAAGTCAACCCAAAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGC
GCAAGCCGGGGATCGGCCCGGTCCCCCCCTGCATGCTACCGATCCTGCTGCTGGCCCCGCTACCG
C
Found at i:21354629 original size:159 final size:156
Alignment explanation
Indices: 21354327--21354824 Score: 360
Period size: 159 Copynumber: 3.1 Consensus size: 156
21354317 ACTCCATATG
* * * * *
21354327 CTTAGAC-ATGGAATTAACTCCGTGTGCCTAAGCCAACCCACAGAA-CAAGCGTGTGGGTGCTCA
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACCAA-CGTGCGGGCGCTCA
* * * ** * * * * * * * *
21354390 GCC-GACCGGAGAGGCAGAATGCCCAAGCCAGGGACCGGCTCGGTCCCCCCCTACATGCTGTCGA
64 GCCAG-CCAGAGAGGCAGAATACGCAAGTGAGGGATCGACCCGAT--CCCCTTGCGTGCTGCCGA
* * ***
21354454 TCCTGTTGCTGTAACCCTCAGTCCGATTCGAT
126 TCCCGCTGCCACAACCCTCAGTCCG-TTCGAT
* *
21354486 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACCAACGTGCGGGCGCTGAGT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACCAACGTGCGGGCGCTCAGC
* * *
21354551 CAGCCAGAGAGGCATAATACGTAAGTCGA-GGATCGACCCGATCCCCCTCTGCGTGGTGCCGATC
66 CAGCCAGAGAGGCAGAATACGCAAGT-GAGGGATCGACCCGAT-CCCCT-TGCGTGCTGCCGATC
* * * * * **
21354615 CCGTTGTCACAACCCTCGGTTCGGTTGGGG
128 CCGCTGCCACAACCCTCAG-TCCGTTCGAT
* * * * ***
21354645 CTCAGAC-ATGGAATGAACTCCCTATGCCTAGGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACCAACGTGCGGGCGCTCAG
* ** * * * * * *
21354709 CCGGCTGGAGAGGCAGAATGCGCAAGTTAGGGATCGGCCCGGTCCCCTTGCGTGCTGTCGATCCT
65 CCAGCCAGAGAGGCAGAATACGCAAGTGAGGGATCGACCCGATCCCCTTGCGTGCTGCCGATCCC
* *
21354774 GCTGCCGCAACCCTCAGTCCTGTTTGAT
130 GCTGCCACAACCCTCAGTCC-GTTCGAT
21354802 CTTAGACT-GGAAATGAACTCCGT
1 CTTAGACTAGG-AATGAACTCCGT
21354825 GGCAAGACGA
Statistics
Matches: 264, Mismatches: 64, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
156 4 0.02
157 48 0.18
158 12 0.05
159 191 0.72
160 9 0.03
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.19
Consensus pattern (156 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACCAACGTGCGGGCGCTCAGC
CAGCCAGAGAGGCAGAATACGCAAGTGAGGGATCGACCCGATCCCCTTGCGTGCTGCCGATCCCG
CTGCCACAACCCTCAGTCCGTTCGAT
Found at i:21354967 original size:26 final size:26
Alignment explanation
Indices: 21354916--21354968 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21354906 CCGGTCTGAT
*
21354916 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21354942 CTTAGACAT-GGAATGAACTCCTTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21354968 C
1 C
21354969 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21355447 original size:26 final size:26
Alignment explanation
Indices: 21355429--21355494 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
21355419 TTAGATTGGA
* *
21355429 AATGAACTCCGTATGCTTAGACTAGG
1 AATGAACTCCATATCCTTAGACTAGG
* *
21355455 TATGAACTCCATATCCTTAGACTGGG
1 AATGAACTCCATATCCTTAGACTAGG
* *
21355481 TATCAACTCCATAT
1 AATGAACTCCATAT
21355495 GCCTAAGTCA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
AATGAACTCCATATCCTTAGACTAGG
Found at i:21356195 original size:26 final size:26
Alignment explanation
Indices: 21356158--21356209 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21356148 GCTCAAACTA
*
21356158 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGGATGC
21356184 TTAGACAT-GGAATGAACTCCGGATGC
1 TTAGAC-TGGGAATGAACTCCGGATGC
21356210 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGGATGC
Found at i:21356483 original size:158 final size:158
Alignment explanation
Indices: 21356182--21356519 Score: 394
Period size: 158 Copynumber: 2.1 Consensus size: 158
21356172 AACTCCGTAT
* ** * *
21356182 GCTTAGACATGGAATGAACTCCGGATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCCTTCGG
1 GCTTAGACAGGGAATGAACTCCCAATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCCTTCAG
* * * * *
21356247 CCGGCTGGAGAGGCAGAATGCGCAAGACGGGATCGGCCCGGTCCCCCTCTGTGTGCTACCGGTCC
66 CCGGCCGGAGAGGCAAAATGCGCAAGACGGGATCGGCCCGGTCCCCCTCTGCGTGCTACAGATCC
*
21356312 CACTGCCACAACCCTCAGTCTGG-CTGGG
131 CACTGCCACAACCCTCAGTCTGGTCT-GA
*
21356340 GCTTAGACAGGGAATGAACTCCCAATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGC-TCA
1 GCTTAGACAGGGAATGAACTCCCAATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGC-CTTCA
* * * * **
21356404 GCTGGCCGGAGAGGCAAAATGCGTAAGCCGGGGATCGGCCTGGTCCCCC-CTGCGTGCTGGAGAT
65 GCCGGCCGGAGAGGCAAAATGCGCAAGAC-GGGATCGGCCCGGTCCCCCTCTGCGTGCTACAGAT
** * ** *
21356468 CTTACTTCCGTAACCCTCGGTCTGGTCTGA
129 CCCACTGCCACAACCCTCAGTCTGGTCTGA
* *
21356498 TCTTAGACTGGGAATGAACTCC
1 GCTTAGACAGGGAATGAACTCC
21356520 GTATGCTTAG
Statistics
Matches: 151, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
158 130 0.86
159 21 0.14
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.17
Consensus pattern (158 bp):
GCTTAGACAGGGAATGAACTCCCAATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCCTTCAG
CCGGCCGGAGAGGCAAAATGCGCAAGACGGGATCGGCCCGGTCCCCCTCTGCGTGCTACAGATCC
CACTGCCACAACCCTCAGTCTGGTCTGA
Found at i:21356535 original size:26 final size:26
Alignment explanation
Indices: 21356499--21356551 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21356489 CTGGTCTGAT
21356499 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21356525 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21356551 C
1 C
21356552 CTATGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21357223 original size:26 final size:26
Alignment explanation
Indices: 21357172--21357224 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21357162 CCGGTCTGAT
* *
21357172 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21357198 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21357224 C
1 C
21357225 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21357677 original size:26 final size:26
Alignment explanation
Indices: 21357639--21357691 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21357629 GGCTCAAACT
21357639 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21357665 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21357691 C
1 C
21357692 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21358018 original size:26 final size:26
Alignment explanation
Indices: 21357982--21358035 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
21357972 CTGGTCCGAT
21357982 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21358008 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21358034 CT
1 CT
21358036 CAAGTCAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21358155 original size:12 final size:13
Alignment explanation
Indices: 21358138--21358169 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
21358128 CTTCCATGCG
21358138 TGCTGCCG-ATCC
1 TGCTGCCGTATCC
21358150 TGCTG-CGTATCC
1 TGCTGCCGTATCC
21358162 TGCTGCCG
1 TGCTGCCG
21358170 CAACCCTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.11
12 14 0.78
13 2 0.11
ACGTcount: A:0.06, C:0.38, G:0.28, T:0.28
Consensus pattern (13 bp):
TGCTGCCGTATCC
Found at i:21358220 original size:26 final size:26
Alignment explanation
Indices: 21358191--21358243 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21358181 CCAATCTGAT
* *
21358191 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
21358217 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
21358243 C
1 C
21358244 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:21358700 original size:55 final size:55
Alignment explanation
Indices: 21358629--21358744 Score: 196
Period size: 55 Copynumber: 2.1 Consensus size: 55
21358619 GCAAGCCGAG
* *
21358629 GATCAGCTCGGTCCCTCCTGCGTGCTATCGATCCTGCTATTGCAACCCTCGGTCC
1 GATCTGCTCGGTCCCTCCTACGTGCTATCGATCCTGCTATTGCAACCCTCGGTCC
*
21358684 GATCTGCTCGGTCCCTCCTACGTGCTATCGATCCTGCTGTTGCAACCCTCGGTCC
1 GATCTGCTCGGTCCCTCCTACGTGCTATCGATCCTGCTATTGCAACCCTCGGTCC
*
21358739 GGTCTG
1 GATCTG
21358745 ATCTTAGACT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.11, C:0.37, G:0.23, T:0.28
Consensus pattern (55 bp):
GATCTGCTCGGTCCCTCCTACGTGCTATCGATCCTGCTATTGCAACCCTCGGTCC
Found at i:21358776 original size:26 final size:26
Alignment explanation
Indices: 21358747--21358799 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21358737 CCGGTCTGAT
21358747 CTTAGACTAGGAATG-ATCTCCGTATG
1 CTTAGACTAGGAATGAAT-TCCGTATG
* *
21358773 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTAGGAATGAATTCCGTATG
21358799 C
1 C
21358800 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAATTCCGTATG
Found at i:21359442 original size:159 final size:158
Alignment explanation
Indices: 21359152--21359654 Score: 496
Period size: 159 Copynumber: 3.2 Consensus size: 158
21359142 ACTCCGTATG
* * *
21359152 CTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TAGCGTGCGGGCACTCAGC
** * * * ** * *
21359217 TAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCAACCTCTACATGCAGTCGATCC
65 CGGCCGGAGAGGCAGAATGCGAAAGCTGGGGATCGACCCGATCCCCCTCTGCATGCTGTCGATCC
*
21359282 TGCTACCGCAACCCTCAGTTCGATTCGAT
130 TGCTACCGCAACCCTCAGTTCGGTTCGAT
* * * * * *
21359311 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCCCAAAATGAGCGTGCAGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAT-AGCGTGCGGGCACTCAG
* * * * * * *
21359375 CCGGCTGGAGAGGCATAATGTGTAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGGTC
64 CCGGCCGGAGAGGCAGAATGCGAAAGCTGGGGATCGACCCGATCCCCCTCTGCATGCTGTCGATC
* * * * * **
21359440 CTGCTTCCACAACCCTCA-ATCTGGCTGGGG
129 CTGCTACCGCAACCCTCAGTTC-GGTTCGAT
* * *
21359470 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAGGCGTTCGGGCACTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATA-GCGTGCGGGCACTCAGC
* * *
21359535 CGACCGAAGTGGCAGAATGCGAAAGCTGGGGATCGACCCGATCCCCC-CTGCATGCTGTCGATCC
65 CGGCCGGAGAGGCAGAATGCGAAAGCTGGGGATCGACCCGATCCCCCTCTGCATGCTGTCGATCC
** * *
21359599 T-CTTGTCGCAACCCTCGGTGT-GGTCCGAT
130 TGC-TACCGCAACCCTCAGT-TCGGTTCGAT
*
21359628 CTTAGA-TTGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
21359655 TTAGACTGCG
Statistics
Matches: 272, Mismatches: 63, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 55 0.20
159 213 0.78
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGCGTGCGGGCACTCAGCC
GGCCGGAGAGGCAGAATGCGAAAGCTGGGGATCGACCCGATCCCCCTCTGCATGCTGTCGATCCT
GCTACCGCAACCCTCAGTTCGGTTCGAT
Found at i:21360390 original size:26 final size:26
Alignment explanation
Indices: 21360348--21360400 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21360338 CATGGCCTAA
21360348 AATCTTACACTGAGAATGAACTCCGT
1 AATCTTACACTGAGAATGAACTCCGT
*
21360374 AATCTTAGACATG-GAATGAACTCCGT
1 AATCTTACAC-TGAGAATGAACTCCGT
21360400 A
1 A
21360401 TGCCTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (26 bp):
AATCTTACACTGAGAATGAACTCCGT
Found at i:21360749 original size:159 final size:158
Alignment explanation
Indices: 21360377--21360841 Score: 474
Period size: 159 Copynumber: 2.9 Consensus size: 158
21360367 ACTCCGTAAT
* * *
21360377 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGG-GTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACG-GGCGTGCGGGCGCTAAG
* * * * * *
21360441 CCGGCTGGAGAGGAAAAATGCGCAAGCCAGGGATCGATCTC-GTCCCCCCTACGTGCTG-TCGAT
65 CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCCTGCGTGCTGCT-GAT
* * *
21360504 CCTGCTGCCGCAACCCTTGGTCCGGCCCGAT
128 CCTGCTACCGCAACCCTCGGTCCGGCCCGAG
* * * * * * * *
21360535 CTCATAC-TGGGAATTAACTCCTTATG-CATAAGTCAACCCACGAAACGAGCGTGCGGGCACTAA
1 CTTAGACAT-GGAATGAACTCCCTATGCCA-AAGCCAACCCATGAAACGGGCGTGCGGGCGCTAA
* * * * *
21360598 GCCGACCGAAAAGGCATAATGCACAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCTGGT
64 GCCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTGCTGAT
** * * ** *
21360663 CCCACTACCACAACCCTCGGTCTGGCTGGGG
128 CCTGCTACCGCAACCCTCGGTCCGGCCCGAG
* *
21360694 CTTAGACATGGAATGAACTCCCTATGCCAAAGCCACCCCATGAAACGGGCATGCGGGCGCTCAA-
1 CTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGGGCGTGCGGGCGCT-AAG
* * * * *
21360758 CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGATCCGGTCCCCCCTGTGTGCTGCCGATCC
65 CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCTGATCC
21360823 TGCTACCGCAACCCTCGGT
130 TGCTACCGCAACCCTCGGT
21360842 TCGGTTTGAT
Statistics
Matches: 245, Mismatches: 53, Indels: 18
0.78 0.17 0.06
Matches are distributed among these distances:
157 5 0.02
158 114 0.47
159 120 0.49
160 6 0.02
ACGTcount: A:0.23, C:0.33, G:0.27, T:0.17
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGGGCGTGCGGGCGCTAAGC
CGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCTGATCCT
GCTACCGCAACCCTCGGTCCGGCCCGAG
Found at i:21360881 original size:26 final size:26
Alignment explanation
Indices: 21360852--21360904 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21360842 TCGGTTTGAT
*
21360852 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21360878 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21360904 C
1 C
21360905 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21361621 original size:26 final size:26
Alignment explanation
Indices: 21361581--21361633 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21361571 GGCTTAAAAT
*
21361581 CTTAGACTGGAAATGAGCTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
21361607 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
21361633 C
1 C
21361634 ATAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:21362161 original size:158 final size:157
Alignment explanation
Indices: 21361607--21362182 Score: 421
Period size: 159 Copynumber: 3.6 Consensus size: 157
21361597 GCTCCGTATG
* * * *
21361607 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCAAGCGAGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCGGGCGCTTAGC
* * * * ** ** * *
21361672 CGGTCGGAGAGGCAAAATGCCCAAACCGAGGATCGGCCCGGTCCCCCCCTCCGTGCTATCGATCC
66 CGATCGGAGAGGCATAATGCGCAAGCCGAGGATC-AACCGGT-CCCCCCTGTGTGCTGTCGACCC
* * * **
21361737 TGCTGCTATAACCCTCAG-TCCAGTCCAAT
129 TGCTGCCACAACCCTCAGTTCGA-TCTGAT
* * * * ** * * * ** *
21361766 CTTAGAC-TGGGAATGACCTCCATATGCATAAGTCAACTCGTGAAATGAGCGTACGGATGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCGGGCGCTTAG
* ** * * * * *
21361830 CCGA-CGGAAGAGTCATAATGCGCTGGTCGAGGATCAGTCCGGTTCCCCTCTGTGTGCTGCCAGT
65 CCGATCGG-AGAGGCATAATGCGCAAGCCGAGGATCA-ACCGG-TCCCCCCTGTGTGCTGTC-GA
* * **
21361894 CCC-GCTGCCACAACCCTCGGTCCGA-CTAGGG
126 CCCTGCTGCCACAACCCTCAGTTCGATCT-GAT
* * * *
21361925 CTTAGACATGGAATGAACTCCCTATGCCA-AAGCCAACCCATGAGACGGGCATGCGGGCG-TTCA
1 CTTAGACATGGAATGAACTCCGTATG-CATAAGCCAACCCACGAAACGAGCATGCGGGCGCTT-A
* * * * *
21361988 ACTGATCAGAGAGGCAGAATGCGCAAGTCGAGGATCAACCTGGTCCCCCCTGTGTGCTGTCGACC
64 GCCGATCGGAGAGGCATAATGCGCAAGCCGAGGATCAACC-GGTCCCCCCTGTGTGCTGTCGACC
* * *
21362053 CTACTACCGCAACCCTCAGTTCGATCTGAT
128 CTGCTGCCACAACCCTCAGTTCGATCTGAT
* * * *
21362083 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTTAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCGGGCGCTTAG
* * *
21362147 CCTACCGGAGAGGCATAATGCGCATGCCGAGGATCA
65 CCGATCGGAGAGGCATAATGCGCAAGCCGAGGATCA
21362183 GCCCGATCCC
Statistics
Matches: 312, Mismatches: 88, Indels: 35
0.72 0.20 0.08
Matches are distributed among these distances:
157 6 0.02
158 119 0.38
159 176 0.56
160 11 0.04
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCGGGCGCTTAGC
CGATCGGAGAGGCATAATGCGCAAGCCGAGGATCAACCGGTCCCCCCTGTGTGCTGTCGACCCTG
CTGCCACAACCCTCAGTTCGATCTGAT
Found at i:21362182 original size:317 final size:318
Alignment explanation
Indices: 21361606--21362183 Score: 707
Period size: 317 Copynumber: 1.8 Consensus size: 318
21361596 AGCTCCGTAT
*
21361606 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCAAGCGAGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCAAGCGAGCGCTCAA
* * ** *
21361671 CCGGTCGGAGAGGCAAAATGCCCAAACCGAGGATCGGCCCGGTCCCCCCCTCCGTGCTATCGATC
66 CCGATCAGAGAGGCAAAATGCCCAAACCGAGGATCAACCCGGTCCCCCCCTCCGTGCTATCGACC
* * * * *
21361736 CTGCTGCTATAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGACCTCCATATGCATAAGTCA
131 CTACTACCACAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCATAAGTCA
* ** * * *
21361801 ACTCGTGAAATGAGCGTACGGATGCTGAGCCGACGGAAGAGTCATAATGCGCTGGTCGAGGATCA
196 ACCCACGAAACGAGCGTACGGATGCTGAGCCGACGGAAGAGGCATAATGCGCTGGCCGAGGATCA
21361866 GTCCGGTTCCCCTCTGTGTGCTGCCAGTCCCGCTGCCACAACCCTCGGTCCGACTAGG
261 GTCCGGTTCCCCTCTGTGTGCTGCCAGTCCCGCTGCCACAACCCTCGGTCCGACTAGG
* * * * * *
21361924 GCTTAGACATGGAATGAACTCCCTATGCCA-AAGCCAACCCATGAGACGGGCATGCGGGCGTTCA
1 GCTTAGACATGGAATGAACTCCCTATG-CATAAGCCAACCCACGAAACGAGCAAGCGAGCGCTCA
* * * ** * ** *
21361988 ACTGATCAGAGAGGCAGAATGCGCAAGTCGAGGATCAACCTGGT-CCCCCCTGTGTGCTGTCGAC
65 ACCGATCAGAGAGGCAAAATGCCCAAACCGAGGATCAACCCGGTCCCCCCCTCCGTGCTATCGAC
* * ** * *
21362052 CCTACTACCGCAACCCTCAGTTC-GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
130 CCTACTACCACAACCCTCAGTCCAG-TCCAATCTTAGACTGGGAATGAACTCCATATGCATAAGT
* * * *
21362116 CAACCCACGAAACGAGCGTGCGGGTGCTTAGCCTACCGG-AGAGGCATAATGCGCAT-GCCGAGG
194 CAACCCACGAAACGAGCGTACGGATGCTGAGCCGA-CGGAAGAGGCATAATGCGC-TGGCCGAGG
21362179 ATCAG
257 ATCAG
21362184 CCCGATCCCA
Statistics
Matches: 214, Mismatches: 42, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
316 1 0.00
317 119 0.56
318 92 0.43
319 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (318 bp):
GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCAAGCGAGCGCTCAA
CCGATCAGAGAGGCAAAATGCCCAAACCGAGGATCAACCCGGTCCCCCCCTCCGTGCTATCGACC
CTACTACCACAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCATAAGTCA
ACCCACGAAACGAGCGTACGGATGCTGAGCCGACGGAAGAGGCATAATGCGCTGGCCGAGGATCA
GTCCGGTTCCCCTCTGTGTGCTGCCAGTCCCGCTGCCACAACCCTCGGTCCGACTAGG
Found at i:21362295 original size:26 final size:27
Alignment explanation
Indices: 21362256--21362311 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
21362246 GATCCGATCC
*
21362256 TAGACTGGGAATGAACTCTGTATG-CT
1 TAGACTGGGAATGAACTCCGTATGCCT
21362282 TAGACT-GGAGATGAACTCCGTATGCCT
1 TAGACTGGGA-ATGAACTCCGTATGCCT
21362309 TAG
1 TAG
21362312 TCAACCCATG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 3 0.11
26 19 0.70
27 5 0.19
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (27 bp):
TAGACTGGGAATGAACTCCGTATGCCT
Found at i:21362664 original size:26 final size:26
Alignment explanation
Indices: 21362635--21362687 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21362625 CTGGTCTGAT
*
21362635 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
21362661 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21362687 C
1 C
21362688 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21363057 original size:160 final size:158
Alignment explanation
Indices: 21362661--21363100 Score: 406
Period size: 160 Copynumber: 2.8 Consensus size: 158
21362651 ACTCTGTATG
* * *
21362661 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAGC
* * * ** *
21362726 CGATCGGAGAGGCAGAATCTGCAAGCCGGGGATGGGCTCGACCCCCTCTGCGTGCTGTCGATCCT
66 CGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACTCGACCCCCTCTGCGTGCTACCGATCCC
* ** *
21362791 ACTGCTGCAACCCTCGGTCCAGTCTGAT
131 ACTACCACAACCCTCGGTCCAGACTGAT
* * * * * * * * *
21362819 CTTAGA-TTGGGAATGAACTCTGTTTGCCTAGGTCAACCCACGAAACGGGCATGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAG
* * * * * *
21362883 CCGGTCGAAGAGGCATAATGTGTAAGCTGGGGATCGACTCGATCCTCCTCTGCGTGCTACC-AGT
65 CCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACTCGA-CCCCCTCTGCGTGCTACCGA-T
* *
21362947 CCCGCTACCACAACCCCTCGGT-CGGACTGGGA-
128 CCCACTACCACAA-CCCTCGGTCCAGACT--GAT
* * * * *
21362979 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACAGGCGTACGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAGC
* ** *
21363044 CGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGA-TCCGATCCCCC-CTTGCGTGCT
66 CGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACT-CGA-CCCCCTC-TGCGTGCT
21363101 GCCAATCCTG
Statistics
Matches: 220, Mismatches: 53, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
157 1 0.00
158 86 0.39
159 30 0.14
160 100 0.45
161 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACTCGACCCCCTCTGCGTGCTACCGATCCC
ACTACCACAACCCTCGGTCCAGACTGAT
Found at i:21363179 original size:26 final size:26
Alignment explanation
Indices: 21363150--21363200 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21363140 TCGATCCGAT
21363150 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
21363176 CTTAGGCATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
21363201 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21363690 original size:26 final size:26
Alignment explanation
Indices: 21363654--21363706 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21363644 CCGATCCGAT
21363654 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGATTGGGAATGAACTCCATATG
* *
21363680 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCATATG
21363706 C
1 C
21363707 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:21364248 original size:26 final size:26
Alignment explanation
Indices: 21364210--21364262 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21364200 GGCTCAAACT
21364210 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21364236 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
21364262 C
1 C
21364263 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21364730 original size:158 final size:155
Alignment explanation
Indices: 21364236--21364737 Score: 398
Period size: 158 Copynumber: 3.2 Consensus size: 155
21364226 ACTCCGTATG
*
21364236 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGTTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCG-TCAAC
** * * * * * * * ** *
21364301 CGATCGGAGAGGCAGAATGCGTAAGCTGGGCTTTGGCCCGATCCCCCCTGCGTGCTGTCGATCCC
65 CGGCCAGAGAGTCAGAATGCGTAAGCAGGG-ATCGGCCCGGTCCTCCCTGCGTGCTACCGATCCT
* *
21364366 GCTATCGTAACCCTCGGTCTGGTCTGAT
129 GCTATCGCAACCCTCGGTCT-GTCCGAT
* * * * * * * * * * *
21364394 ATTAGAC-TAGAAAGGAACTTCGTATGCATAAGTCAACCCATGAAACAAGCATGCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCG-TCAA
* * * * ** * *
21364458 CTGGCTAAAGAGGT-ATAATGCACAAGTCGGGGATCGGCCCGGTCCCTCTCTGCGTGCTACCGAT
64 CCGGCCAGAGA-GTCAGAATGCGTAAG-CAGGGATCGGCCCGGT-CCTCCCTGCGTGCTACCGAT
** * * * * * **
21364522 CCTGCTGCCACAACCCTCGATCCGGCTGGGG
126 CCTGCTATCGCAACCCTCGGTCTGTC-CGAT
* * * *
21364553 CTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAAT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCG-TCAAC
* * *
21364618 CGGCCAGAGAGTCAGAATGCGTAAGCCAGGGATCAGCCTGGTCCTCCCTACGTGCTACCGATCCT
65 CGGCCAGAGAGTCAGAATGCGTAAG-CAGGGATCGGCCCGGTCCTCCCTGCGTGCTACCGATCCT
*
21364683 GCTATCGCAACCCTCGGTCTGATCCAAT
129 GCTATCGCAACCCTCGGTCTG-TCCGAT
*
21364711 CTTAGAC-TGGCAATGAACTCCATATGC
1 CTTAGACATGG-AATGAACTCCGTATGC
21364738 TTAGACTGGG
Statistics
Matches: 254, Mismatches: 81, Indels: 18
0.72 0.23 0.05
Matches are distributed among these distances:
157 3 0.01
158 135 0.53
159 116 0.46
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTCAACC
GGCCAGAGAGTCAGAATGCGTAAGCAGGGATCGGCCCGGTCCTCCCTGCGTGCTACCGATCCTGC
TATCGCAACCCTCGGTCTGTCCGAT
Found at i:21365958 original size:26 final size:26
Alignment explanation
Indices: 21365908--21365960 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21365898 CCGGTTCGAT
**
21365908 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21365934 CTTAGACTGGGGATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21365960 C
1 C
21365961 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21366317 original size:26 final size:26
Alignment explanation
Indices: 21366288--21366340 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21366278 CCGGTTCGAT
21366288 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
21366314 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21366340 C
1 C
21366341 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21368026 original size:26 final size:26
Alignment explanation
Indices: 21367985--21368037 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21367975 CTGGTTTGAT
21367985 CTTAGACTGGCAATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
** *
21368011 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGCAATGAACTCCATATG
21368037 C
1 C
21368038 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:21368743 original size:26 final size:26
Alignment explanation
Indices: 21368705--21368757 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21368695 GGCTCAAAAT
21368705 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
21368731 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
21368757 C
1 C
21368758 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:21369075 original size:159 final size:159
Alignment explanation
Indices: 21368730--21369085 Score: 376
Period size: 159 Copynumber: 2.2 Consensus size: 159
21368720 AACTCTGTAT
* * * * *
21368730 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCTTACGGGCGCTCAG
1 GCTTAGACATAGAATGAACTCCGTATGCATAAACCAACCCATGAAACGAGCATACGGGCGCTCAG
* * * * *
21368795 CCGATCGGAGAGGCAGAATGCGCAAGCTGGAGATTGGCCCGATCCCCCCTTACGTGCTGTCAATC
66 CCGATCGAAGAGGAAGAATGCGCAAGCCGGAGATCGACCCGATCCCCCCTTACGTGCTGTCAATC
** * *
21368860 CTGCTGCTGCAACCCTCGGTCCGATTTGA
131 CTGCTGCCACAACCCTCGGTCCGACTGGA
* * * * * * *
21368889 TCTTAGAC-TGAGGATGAACTTCGTATGCATAAATCAACCCATGAAACGAGCATGCGGGTGCTGA
1 GCTTAGACAT-AGAATGAACTCCGTATGCATAAACCAACCCATGAAACGAGCATACGGGCGCTCA
* * * * *
21368953 GCCGATCGAAGAGGAATAATGTGCAAGCCGGGGATCGACCCGGT-CCCCCTCTGCGTGCTGTTC-
65 GCCGATCGAAGAGGAAGAATGCGCAAGCCGGAGATCGACCCGATCCCCCCT-TACGTGCTG-TCA
* * *
21369016 GTCCTGTTGCCACAACCCTCGGTCCGACTGGG
128 ATCCTGCTGCCACAACCCTCGGTCCGACTGGA
* * *
21369048 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTTAGACATAGAATGAACTCCGTATGCATAAACCAAC
21369086 AAACGAAATG
Statistics
Matches: 157, Mismatches: 36, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
158 7 0.04
159 147 0.94
160 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (159 bp):
GCTTAGACATAGAATGAACTCCGTATGCATAAACCAACCCATGAAACGAGCATACGGGCGCTCAG
CCGATCGAAGAGGAAGAATGCGCAAGCCGGAGATCGACCCGATCCCCCCTTACGTGCTGTCAATC
CTGCTGCCACAACCCTCGGTCCGACTGGA
Found at i:21369923 original size:158 final size:158
Alignment explanation
Indices: 21369613--21370266 Score: 552
Period size: 159 Copynumber: 4.1 Consensus size: 158
21369603 AACTCCATAT
* ** * * * *
21369613 GCTTGGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAAAGAGCATGCAGGA-ACTTA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGC--GACGCTCA
* * * * * * ** * *
21369677 GCCGACTGGAGAGGTAGAATGCA-TAAACCGGGGATCGGCCCGATGCCCGC-CTGCGTGCTGTCG
64 GCCGGCCGGAGAGGCATAATG-AGCAAGCAAGGGATCGACCCGAT-CCCCCTCTGCGTGCTGTCG
* * * * * * *
21369740 ATCCTGTTACCTCAACCCTCAGTCCGGTTCGA
127 GTCCAGCTGCCACAACCCTCGGTCCGGCTCGA
* * * * * * * * **
21369772 TCTTAGAC-TGGAATGAGCTTCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCAGACACTGTG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGC-GACGCTCAG
* ** * *
21369836 CCGGCCAGAGAGGCATAATGAGCAAGCTGGGGATCGACCCGGTCCCCCTCTGTGTGCTGTCGGTC
65 CCGGCCGGAGAGGCATAATGAGCAAGCAAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTC
* *
21369901 CAGCTGCCACAACCCTCGGTCCGGCTGGG
130 CAGCTGCCACAACCCTCGGTCCGGCTCGA
* * * * *
21369930 GCTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCACGGAACGGGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGC-GACGCTCAG
* * *
21369995 CCGGCCGGAGAGGCATAATGCA-CAAGCCAGGGATCGGCCCGATCCCCTTCTGCGTGCTGTCGGT
65 CCGGCCGGAGAGGCATAATG-AGCAAGCAAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGT
* * *
21370059 CCTA-CTGCCACAACCCTTGGTCCGGCTGGG
129 CC-AGCTGCCACAACCCTCGGTCCGGCTCGA
* *
21370089 GCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCATGAAAC-AGGCATGCGAGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCATGCGA-CGCTCA
** * * * *
21370153 GTTGGCTGGAGAGGCAGAATGCGCAAGCAAGGGATCGACCCGAT-CCCCTCTGCGTGCTGTCGAT
64 GCCGGCCGGAGAGGCATAATGAGCAAGCAAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGT
** ** *
21370217 CTTGCTGCCACAACCCTCGGTCCGATTCAA
129 CCAGCTGCCACAACCCTCGGTCCGGCTCGA
*
21370247 TCTTAGAC-TGTGAATGAACT
1 GCTTAGACATG-GAATGAACT
21370267 TCGTATGCTT
Statistics
Matches: 401, Mismatches: 83, Indels: 23
0.79 0.16 0.05
Matches are distributed among these distances:
157 9 0.02
158 171 0.43
159 219 0.55
160 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGACGCTCAGC
CGGCCGGAGAGGCATAATGAGCAAGCAAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCC
AGCTGCCACAACCCTCGGTCCGGCTCGA
Found at i:21370010 original size:159 final size:159
Alignment explanation
Indices: 21369707--21370240 Score: 560
Period size: 159 Copynumber: 3.4 Consensus size: 159
21369697 GCATAAACCG
* * * * * * * * * *
21369707 GGGATCGGCCCGATGCCCGC-CTGCGTGCTGTCGATCCTGTTACCTCAACCCTCAGTCCGGTTCG
1 GGGATCGACCCGAT-CCCCCTCTGCGTGCTGTCGGTCCAGCTGCCACAACCCTCGGTCCGGCTGG
** * * * * * * * *
21369771 ATCTTAGAC-TGGAATGAGCTTCGTACGCCTAAGTCAACCCACGAAAC-GAGCGTGC-AGACACT
65 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAG-GCATACGAG-CGCT
** * **
21369833 GTGCCGGCCAGAGAGGCATAATGAGCAAGCTG
128 CAGCCGGCCGGAGAGGCATAATGAGCAAGCAA
* *
21369865 GGGATCGACCCGGTCCCCCTCTGTGTGCTGTCGGTCCAGCTGCCACAACCCTCGGTCCGGCTGGG
1 GGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCAGCTGCCACAACCCTCGGTCCGGCTGGG
* * * *
21369930 GCTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCACGGAACGGGCATACGGGCGCTCAG
66 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCATACGAGCGCTCAG
*
21369995 CCGGCCGGAGAGGCATAATGCA-CAAGCCA
131 CCGGCCGGAGAGGCATAATG-AGCAAGCAA
* * *
21370024 GGGATCGGCCCGATCCCCTTCTGCGTGCTGTCGGTCCTA-CTGCCACAACCCTTGGTCCGGCTGG
1 GGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCC-AGCTGCCACAACCCTCGGTCCGGCTGG
* * *
21370088 GGCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCATGAAACAGGCATGCGAGCGCTCA
65 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCATACGAGCGCTCA
** * * *
21370153 GTTGGCTGGAGAGGCAGAATGCGCAAGCAA
130 GCCGGCCGGAGAGGCATAATGAGCAAGCAA
* **
21370183 GGGATCGACCCGAT-CCCCTCTGCGTGCTGTCGATCTTGCTGCCACAACCCTCGGTCCG
1 GGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCAGCTGCCACAACCCTCGGTCCG
21370241 ATTCAATCTT
Statistics
Matches: 314, Mismatches: 54, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
157 4 0.01
158 92 0.29
159 214 0.68
160 4 0.01
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.19
Consensus pattern (159 bp):
GGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCAGCTGCCACAACCCTCGGTCCGGCTGGG
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCATACGAGCGCTCAG
CCGGCCGGAGAGGCATAATGAGCAAGCAA
Found at i:21370289 original size:26 final size:26
Alignment explanation
Indices: 21370248--21370300 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21370238 CCGATTCAAT
* *
21370248 CTTAGACTGTGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21370274 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21370300 C
1 C
21370301 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21370998 original size:26 final size:26
Alignment explanation
Indices: 21370959--21371009 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
21370949 GGTCAGATCC
21370959 TAGACTGGGAATGAACTCTATATGCT
1 TAGACTGGGAATGAACTCTATATGCT
* * *
21370985 TAGATTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTATATGC
21371010 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTATATGCT
Found at i:21372216 original size:26 final size:26
Alignment explanation
Indices: 21372180--21372232 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21372170 CCGGTCTGAT
21372180 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
21372206 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
21372232 C
1 C
21372233 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:21373283 original size:158 final size:157
Alignment explanation
Indices: 21372925--21373424 Score: 458
Period size: 158 Copynumber: 3.2 Consensus size: 157
21372915 TCCGTCTGCA
* *
21372925 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATG-CTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCG
** * * * ** *
21372990 GCCGGAGAGGCAGATTGTGCAAGTCGGGGATC-ATCCCTGTCCCCCTTGGGTGCTGTCGATCCTG
65 ATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGATCCCTGTCCCCCCTGCCTGCTGTCGATCCTA
* * *
21373054 CTGCCACAACCGTCGATCCGGTCCTATCT
130 CTACCACAACCCTCGATCCGG-CCTAGCT
* * * *
21373083 TAGAC-TGGGAATGAACTCTGTATGCATATGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCC
1 TAGACAT-GGAATGAACTCCGTATGC-TAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCC
* * *
21373147 GATCGAAGAGGCATAATGTGCAAGCCGGGGATCGA-CCC-GATCCCCCACTGCCTGCTGTCGGTC
64 GATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGATCCCTG-TCCCCC-CTGCCTGCTGTCGATC
21373210 CTACTACCACAACCCTC-AGTCCGG-CTGAGGCT
127 CTACTACCACAACCCTCGA-TCCGGCCT-A-GCT
* * * * * *
21373242 TAGGCATGGAATGAACTCCCTATGCTAAGCCAATCCGCGAAATGGGCGTGCGGGCACTCAGCTGA
1 TAGACATGGAATGAACTCCGTATGCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGA
* * * * ** * * * ** *
21373307 TCGGAGTGGCAGAATGCGCAAGCAGGGGATCGGT-CGGGTCCCTCCTGCGTGATACCGATCCTGC
66 TCGGAGAGGCAGAATGTGCAAGCCGGGGATCGATCCCTGTCCCCCCTGCCTGCTGTCGATCCTAC
* * * * *
21373371 TGCCGCAACCCTCGGTCCGGTCTGATCT
131 TACCACAACCCTCGATCCGGCCT-AGCT
21373399 TAGAC-TGGGAATGAACTCCGTATGCT
1 TAGACAT-GGAATGAACTCCGTATGCT
21373425 TAGACTGGGG
Statistics
Matches: 278, Mismatches: 50, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
156 1 0.00
157 59 0.21
158 162 0.58
159 55 0.20
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.20
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCGTATGCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGA
TCGGAGAGGCAGAATGTGCAAGCCGGGGATCGATCCCTGTCCCCCCTGCCTGCTGTCGATCCTAC
TACCACAACCCTCGATCCGGCCTAGCT
Found at i:21373426 original size:26 final size:26
Alignment explanation
Indices: 21373397--21373449 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21373387 CCGGTCTGAT
21373397 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21373423 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21373449 C
1 C
21373450 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21374672 original size:26 final size:26
Alignment explanation
Indices: 21374634--21374686 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21374624 GGCTCAAAAT
21374634 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21374660 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21374686 C
1 C
21374687 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21374847 original size:26 final size:26
Alignment explanation
Indices: 21374818--21374870 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21374808 CTGGTTCGAT
*
21374818 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
21374844 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
21374870 C
1 C
21374871 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:21375502 original size:902 final size:904
Alignment explanation
Indices: 21373754--21375747 Score: 2772
Period size: 902 Copynumber: 2.2 Consensus size: 904
21373744 CAGCTGGGGT
* * * * * *
21373754 TTAGACATGGAATGAACTCCTTATGCCCAAGCCAACCCATGAAACGGGCGTGCGGGCGATCAG-T
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAGCT
* * * ** ** * * * *
21373818 CGGTCGGCGAGGCAGAATGCGCAAGCCGGGGATC-AATCGGGTCCACCTTATGTGTTGCCGATCC
66 -GGTCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGATTCC-CCCTACGTGCTGTCGATCC
* * * * * * * *
21373882 TGCTGTCGTAACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACT-TCATATGCTTAGGCTG
129 TGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTG
* * * * *
21373946 GGGATGAACTCTGTATGCCTAAGTCAACGCACGAAACGAGTGTACGGGCGCTCAGCTGACAAGAG
193 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGAGCGCTCAGCCGACAAGAG
** * *
21374011 AGACGGCATGCGTAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTC
258 AGACGGCATGCCCAAGCCGGGGATCGAACGAGTGGTAGGTGGGTTCAAGCACATCTACATATTTC
* * *
21374076 TACTATCTGAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGA
323 TACCATCTCAATGCCATTTTTATGGCTTG---ATTCATACAATGGTCCCCGAAGCCTTCATGTGA
* *
21374141 AGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGGGGTTCGGGA
385 AGTTTCATGGCAAGACGACCCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGGGGTTCGGGA
* *
21374206 TTTTTGAAATTTTTTTTGGAAAGATTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTT
450 TTTTTGAAAATTTTTTTAGAAAGATTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTT
* * * *
21374271 GTTCACATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGGAGACGATTTAGTGACCGTTTGAAA
515 GTTCACATGCACAAAAAAATTAAGCTAAAAACTCGAAGTCGAGAAGATTTAGTGACCGTTTCAAA
* * *
21374336 AAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGTAGCAAACCTATAAAATCTCAAATGCTC
580 AAAGTGTCCCCATTTCAGAAACTTTAAAGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTC
*
21374401 TTTAATGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACC
645 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACC
*
21374466 AGCACCCATCGCACATCATGTGCACACACCCCCCGACCCCCCCAATCGCCGGAACCCCCAATGCC
710 AGCACCCATCGCACATCATGTGCACACACCCCCCGACCCCCACAATCGCCGGAACCCCCAATGCC
** * * * *
21374531 GCCGATTAGGCTCTTCGACGATGCTCCGATGATGCTGCCCCGGGTGAAACAAATGTGGCACCAGC
775 GCCGATTAGGCTCACCGACGATGATCCGATGATGCTGCCCCAGGCGAAAAAAATGTGGCACCAGC
21374596 ACATGCCCGAGCCCAGCATGTGCA-TCGTGGCTCAAAATCTTAGACTGGGAATGAACTCCATATG
840 ACATGCCCGAGCCCAGCATGTGCACT-GTGGCTCAAAATCTTAGACTGGGAATGAACTCCATATG
21374660 C
904 C
*
21374661 TTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTTAGCT
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAGCT
** * * *
21374726 GCCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGATTCCCCCTACGTGCTGTCAATCTTG
66 GGTCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGATTCCCCCTACGTGCTGTCGATCCTG
*
21374791 CTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATAAACTCTGTATGCTTAGACTGGGG
131 CTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGG
* ** * *
21374856 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGAGCGCTCAGCCGACCAGAGAGG
196 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGAGCGCTCAGCCGACAAGAGAGA
21374921 CAGG-ATGCCCAAGCCGGGGATCGAACGAGTGGTAGGTGGGTTCAAGCACATCTACATATTTCTA
261 C-GGCATGCCCAAGCCGGGGATCGAACGAGTGGTAGGTGGGTTCAAGCACATCTACATATTTCTA
21374985 CCATGC-CAATGCCATTTTTATGGCTTG-TTCATACAATGGTCCCCGAAGCCTTCATGTGAAGTT
325 CCAT-CTCAATGCCATTTTTATGGCTTGATTCATACAATGGTCCCCGAAGCCTTCATGTGAAGTT
* *
21375048 TCGTGGCAAGACGACCCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTT
389 TCATGGCAAGACGACCCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGGGGTTCGGGATTTT
* * *
21375113 TTAAAATTTTTTTAGAAAG-TGTTTTGTCCCCAAATTTGGTAGAGGTGATCTTTGTATTTTTTTT
454 TGAAAATTTTTTTAGAAAGAT-TTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTGTT
** * * * *
21375177 GGCATGTAC-AAAACATTAAGCTTAAAACTCGAAGTCGAGAAGATTTTGTGACCGTTTCAAAAAA
518 CACATGCACAAAAAAATTAAGCTAAAAACTCGAAGTCGAGAAGATTTAGTGACCGTTTCAAAAAA
21375241 GTGTCCCCATTTCAGAAACTTTAAAGGCTACTT-GCAGCAAACCTATAAAATCTCAAATGCTCTT
583 GTGTCCCCATTTCAGAAACTTTAAAGGCTA-TTGGCAGCAAACCTATAAAATCTCAAATGCTCTT
* *
21375305 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGTCCAATATAAGGGCCAAGTACCAG
647 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * * *
21375370 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCATAATCGTCGGAACCCTCAATGCCGT
712 CACCCATCGCACATCATGTGCACACACCCCCCGACCCCCACAATCGCCGGAACCCCCAATGCCGC
* * * * * *
21375435 TGGTTAGGCTCACCGGCGATGATCCGGTGATGGTGCCCCAGGCGAAAAAAATGCT-TCACCAGCA
777 CGATTAGGCTCACCGACGATGATCCGATGATGCTGCCCCAGGCGAAAAAAATG-TGGCACCAGCA
* * *
21375499 CATGCCCGAGCCCAGCATGTGTACTGTGGCTCAAAATCTTAGACTGGGAATGAACTTCGTATGC
841 CATGCCCGAGCCCAGCATGTGCACTGTGGCTCAAAATCTTAGACTGGGAATGAACTCCATATGC
* * *
21375563 TTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAGCT
* * * * * *
21375628 GGTCGGAGAGGTAGAATGCACAAGCCAGGGAACGACCC-AGTCCACCCCTGCATGCTATCGATCC
66 GGTCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGA-TTC-CCCCTACGTGCTGTCGATCC
* * * * *
21375692 TACTGCCGCAACCCTCAGTTTGG-TCTGATCTTAGACTAGGAATGAACTCCGTATGC
129 TGCTGCCGCAACCCTCGGTCTGGTTC-GATCTTAGACTGGGAATGAACTCTGTATGC
21375748 CTAAGTCAAC
Statistics
Matches: 958, Mismatches: 117, Indels: 28
0.87 0.11 0.03
Matches are distributed among these distances:
901 1 0.00
902 434 0.45
903 225 0.23
907 288 0.30
908 10 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (904 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAGCT
GGTCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGATTCCCCCTACGTGCTGTCGATCCTG
CTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGG
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGAGCGCTCAGCCGACAAGAGAGA
CGGCATGCCCAAGCCGGGGATCGAACGAGTGGTAGGTGGGTTCAAGCACATCTACATATTTCTAC
CATCTCAATGCCATTTTTATGGCTTGATTCATACAATGGTCCCCGAAGCCTTCATGTGAAGTTTC
ATGGCAAGACGACCCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGGGGTTCGGGATTTTTG
AAAATTTTTTTAGAAAGATTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTGTTCAC
ATGCACAAAAAAATTAAGCTAAAAACTCGAAGTCGAGAAGATTTAGTGACCGTTTCAAAAAAGTG
TCCCCATTTCAGAAACTTTAAAGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAG
GGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
CATCGCACATCATGTGCACACACCCCCCGACCCCCACAATCGCCGGAACCCCCAATGCCGCCGAT
TAGGCTCACCGACGATGATCCGATGATGCTGCCCCAGGCGAAAAAAATGTGGCACCAGCACATGC
CCGAGCCCAGCATGTGCACTGTGGCTCAAAATCTTAGACTGGGAATGAACTCCATATGC
Found at i:21375574 original size:26 final size:26
Alignment explanation
Indices: 21375536--21375588 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
21375526 GGCTCAAAAT
21375536 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
21375562 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
21375588 C
1 C
21375589 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:21375863 original size:159 final size:157
Alignment explanation
Indices: 21375561--21376064 Score: 464
Period size: 159 Copynumber: 3.2 Consensus size: 157
21375551 AACTTCGTAT
* *
21375561 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAATGAGCGTGCGGGCACTCAG
* * * * ** * **
21375626 CCGGTCGGAGAGGTAGAATGCACAAGCCAGGGAACGACCCAGTCCACCCCTGCATGCTATCGATC
65 CCGGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCTGGTCC-CCCCTGCGTGCTGCCGATC
* * **
21375691 CTACTGCCGCAACCCTCAGTTTGGTCT-GA
129 CCACTGCCACAACCCTCAGTCCGGT-TGGA
* * *
21375720 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAGCGTGCGGGCACTCA
* * *
21375784 ACCGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCTGGTCCCCCTCTGCGTGCTGCCTG-
64 GCCGGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCTGGTCCCCC-CTGCGTGCTGCC-GA
** * *
21375848 TCCCGTTGCCACAACCCTCGGTCCGGTTGGG
127 TCCCACTGCCACAACCCTCAGTCCGGTTGGA
* * * *
21375879 GCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGA-TC
1 GCTTAGACATGGAATGAACTC-CGTATGCCTAAG-CAACCCACGAAATGAGCGTGCGGG-CACTC
* * * * *
21375942 AGCCGGTCAGAGAGGCAAAATGCGCAAGCCGGGGATC-AACTCGATCCCCCCTGCGTGCTGTCGA
63 AGCCGGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCT-GGTCCCCCCTGCGTGCTGCCGA
* * * **
21376006 TCCTACTGTCGCAACCCTTGGTCCGGTCT-GA
127 TCCCACTGCCACAACCCTCAGTCCGGT-TGGA
* ** *
21376037 TCTTAGACCGGGAATGCACTCCGTATGC
1 GCTTAGACATGGAATGAACTCCGTATGC
21376065 TTAGACTGGG
Statistics
Matches: 282, Mismatches: 51, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
157 2 0.01
158 63 0.22
159 212 0.75
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAATGAGCGTGCGGGCACTCAGC
CGGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCTGGTCCCCCCTGCGTGCTGCCGATCCC
ACTGCCACAACCCTCAGTCCGGTTGGA
Found at i:21376067 original size:26 final size:26
Alignment explanation
Indices: 21376038--21376090 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21376028 CCGGTCTGAT
*
21376038 CTTAGACCGGGAATGCACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
* *
21376064 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
21376090 C
1 C
21376091 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:21376188 original size:184 final size:184
Alignment explanation
Indices: 21375879--21376338 Score: 541
Period size: 184 Copynumber: 2.5 Consensus size: 184
21375869 TCCGGTTGGG
* * * *
21375879 GCTTAGACAT-GGAATGAACTCTC-TATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGA-T
1 GCTTAGAC-TGGGGATGAACTC-CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG-CACT
** ** *
21375941 CAGCCGGTCAGAGAGGCAAAATGCGCAAGCCGGGGATCAACTCGATCCCCCCTGCGTGCTGTCGA
63 CAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCAACTCGATCCCCCCTACGTGCTGTCGA
* * **
21376006 TCCTACTGTCGCAACCCTTGGTCCGGTCTGATCTTAGACCGGGAATGCACTCCGTAT
128 TCCTACTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACCGGGAATAAACTCCGTAT
* *
21376063 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCACTCAA
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * **
21376128 CCGACCAGAGAGGCAGGATGCGCAAGTCGGGGATC-AGTCGGGTCCCCTTTACGTGCTGTCGATC
66 CCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCAACTC-GATCCCCCCTACGTGCTGTCGATC
* * * *
21376192 CTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAGTAAACTCCGTAT
130 CTACTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACCGGGAATAAACTCCGTAT
* * * * * * * *
21376247 GCTTAGACTGGAGATGAACTCTGTATGCCTAAGTCAACGCACGAAATGAGTGTACGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * *
21376312 CCGACCAGAGAGACGGGATGCACAAGC
66 CCGACCAGAGAGGCAGGATGCGCAAGC
21376339 TAGGGATCGA
Statistics
Matches: 234, Mismatches: 38, Indels: 8
0.84 0.14 0.03
Matches are distributed among these distances:
183 6 0.03
184 228 0.97
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.20
Consensus pattern (184 bp):
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCAACTCGATCCCCCCTACGTGCTGTCGATCC
TACTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACCGGGAATAAACTCCGTAT
Found at i:21376251 original size:26 final size:26
Alignment explanation
Indices: 21376222--21376274 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21376212 CCGGTCCGAT
21376222 CTTAGACTGG-GAGTAAACTCCGTATG
1 CTTAGACTGGAGA-TAAACTCCGTATG
* *
21376248 CTTAGACTGGAGATGAACTCTGTATG
1 CTTAGACTGGAGATAAACTCCGTATG
21376274 C
1 C
21376275 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAGATAAACTCCGTATG
Found at i:21377374 original size:159 final size:158
Alignment explanation
Indices: 21376972--21377388 Score: 421
Period size: 158 Copynumber: 2.6 Consensus size: 158
21376962 AACTTCGTGT
* * *
21376972 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
21377037 TC-GACTGGGGAGGCAAAATGCACAAGCCAGGGATCAGCCCGATCTGACCCTGCGTGCTGTCAAT
66 -CAGACTGGAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCTCACCCTCCGTGCTGCCAAT
** *
21377101 CTTGCAGCCGTAACCCTCGGTCCAATCTG
130 CCCGCAGCCGTAACCCTCGGTCCAAGCTG
** * * * * *
21377130 ATTTTGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * **
21377194 GCAGACCGAAGAGGCATAATGCGCAAGCTAGGGATCAGCCCGGTC-CCCCTCTCCGTGCTGCCGG
65 GCAGACTGGAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCTCACC-CTCCGTGCTGCCAA
* *
21377258 TCCCGCTGCCGTAGCCCTCGGTCC-AGCTAGG
129 TCCCGCAGCCGTAACCCTCGGTCCAAGCT--G
* * * *
21377289 GCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * *
21377354 CCAG-CTGGAGAGATAGAATGCGCAAGCCGGGGATC
66 -CAGACTGGAGAGGCAAAATGCGCAAGCCAGGGATC
21377389 GACCAAGTCC
Statistics
Matches: 206, Mismatches: 46, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
157 7 0.03
158 118 0.57
159 77 0.37
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CAGACTGGAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCTCACCCTCCGTGCTGCCAATC
CCGCAGCCGTAACCCTCGGTCCAAGCTG
Found at i:21377828 original size:26 final size:26
Alignment explanation
Indices: 21377799--21377850 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21377789 TCTGGTCCGA
*
21377799 TCTTAGAC-TGGGAATGAACTCTGTAT
1 TCTTAGACAT-GGAATGAACTCCGTAT
21377825 TCTTAGACATGGAATGAACTCCGTAT
1 TCTTAGACATGGAATGAACTCCGTAT
21377851 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTTAGACATGGAATGAACTCCGTAT
Found at i:21378203 original size:159 final size:158
Alignment explanation
Indices: 21377828--21378204 Score: 375
Period size: 159 Copynumber: 2.4 Consensus size: 158
21377818 TCTGTATTCT
* * * *
21377828 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATACGGATGCTTAACCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGG-CGCTGAACCG
* * * ** * *
21377893 ATCGGAGAGGTAGAATGTGTAAGCCGGGGATCGACCAGGTCCCCCTCTGTGTGCTGTCGATCCTA
65 ATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCATGCTGCCGATCCCA
* * * * *
21377958 CTGTTGCAACCCTTGGTCCAGTCTGATCT
130 CTGCTACAACCCTCGGTCCAGTCTGAGCA
* ** * * * * *
21377987 TAGGC-TGGGAATGAACTTTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTAC-GGCGCTGAACC
* *
21378051 GA-CTGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCATGCTGCC-AGTC
64 GATC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCATGCTGCCGA-TC
* * *
21378114 CCGCTGCTACAACCCTCGGTTCAG-CTGGCGCA
127 CCACTGCTACAACCCTCGGTCCAGTCT-GAGCA
* * *
21378146 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTATCGGCGCT
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTA-CGGCGCT
21378205 CAGCTGGCCA
Statistics
Matches: 172, Mismatches: 39, Indels: 14
0.76 0.17 0.06
Matches are distributed among these distances:
158 5 0.03
159 163 0.95
160 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGCGCTGAACCGA
TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCATGCTGCCGATCCCAC
TGCTACAACCCTCGGTCCAGTCTGAGCA
Found at i:21378453 original size:26 final size:26
Alignment explanation
Indices: 21378415--21378467 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21378405 GGCTCAAAAT
21378415 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21378441 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21378467 C
1 C
21378468 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21378735 original size:20 final size:20
Alignment explanation
Indices: 21378710--21378750 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
21378700 ACCCAGTCCC
21378710 CCTCTGCGTGCTACCGGTCT
1 CCTCTGCGTGCTACCGGTCT
21378730 CCTCTGCGTGCTACCGGTCT
1 CCTCTGCGTGCTACCGGTCT
21378750 C
1 C
21378751 GCTGCCACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.05, C:0.41, G:0.24, T:0.29
Consensus pattern (20 bp):
CCTCTGCGTGCTACCGGTCT
Found at i:21378965 original size:26 final size:26
Alignment explanation
Indices: 21378936--21378988 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21378926 CCGGTCTGAT
*
21378936 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21378962 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21378988 C
1 C
21378989 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21379508 original size:158 final size:157
Alignment explanation
Indices: 21379105--21379647 Score: 502
Period size: 158 Copynumber: 3.4 Consensus size: 157
21379095 CTGTCGATCC
* * * *
21379105 TGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACAGGGAATGAACTCCGTA
1 TGCTG-CGATCCTACTGCCAAAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTA
* ** * * * * * *
21379170 TGCCTAAGGCAACCCACGAAATGAGCGTGTGGGTGGTCAGTCGGTCGAAAAGGTAGAATGCACAA
65 TGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGTC-GCCGGAGAGGTAGAATGCACAA
* * *
21379235 GCTGGGGATCGACCCGATCCCCCTCTGCG
129 GCCGGGGATCGGCCCGGTCCCCCTCTGCG
* * * * * * * ** *
21379264 TGCTGTCGATCCTGCTACCAGAACCCTCAGTTCGGTTTGATCTTAGAC-TAGGAATGAACTCTGT
1 TGCTG-CGATCCTACTGCCAAAACCCTCGGTCCGGCTGGGGCTTAGACAT-GGAATGAACTCCGT
** * * * * * * *
21379328 ATGCCTAAGTAAACCCACGAAACAAGCGTACGGGCACTGAGCCAGCCGGAGTGGCATAATGCACA
64 ATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGTC-GCCGGAGAGGTAGAATGCACA
*
21379393 AGCCAGGGATCGGCCCGGTCCCCCTCTGCG
128 AGCCGGGGATCGGCCCGGTCCCCCTCTGCG
* * *
21379423 TGCTGC-AGTCCTATTGCCAAAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTA
1 TGCTGCGA-TCCTACTGCCAAAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTA
* * *
21379487 TGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAGTCGACCGGAGAGGTAGAATGCGCAA
65 TGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCG-CCGGAGAGGTAGAATGCACAA
* *
21379552 GCCGGGGATCGGCCTGGTCCCCC-CTGTG
129 GCCGGGGATCGGCCCGGTCCCCCTCTGCG
** * * * **
21379580 TGCTGCCGATCCTACTGCCGTAACCCTCAGTTCGG-TCCGATCTTAGAC-TGGGAATGAACTCCG
1 TGCTG-CGATCCTACTGCCAAAACCCTCGGTCCGGCT-GGGGCTTAGACAT-GGAATGAACTCCG
21379643 TATGC
63 TATGC
21379648 TTAGATTGGG
Statistics
Matches: 305, Mismatches: 71, Indels: 17
0.78 0.18 0.04
Matches are distributed among these distances:
157 13 0.04
158 160 0.52
159 132 0.43
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
TGCTGCGATCCTACTGCCAAAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
GCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGCCGGAGAGGTAGAATGCACAAGC
CGGGGATCGGCCCGGTCCCCCTCTGCG
Found at i:21379650 original size:26 final size:26
Alignment explanation
Indices: 21379621--21379673 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21379611 TCGGTCCGAT
21379621 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
21379647 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21379673 C
1 C
21379674 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21380002 original size:26 final size:26
Alignment explanation
Indices: 21379973--21380025 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21379963 CTGGTCCAAT
*
21379973 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
21379999 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21380025 C
1 C
21380026 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21381067 original size:26 final size:26
Alignment explanation
Indices: 21381029--21381081 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21381019 GGCTCAAAAT
** *
21381029 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCATATG
21381055 CTTAGACACGGAATGAACTCCATATG
1 CTTAGACACGGAATGAACTCCATATG
21381081 C
1 C
21381082 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCATATG
Found at i:21381350 original size:159 final size:159
Alignment explanation
Indices: 21381055--21381417 Score: 353
Period size: 159 Copynumber: 2.3 Consensus size: 159
21381045 ACTCCGTATG
21381055 CTTAGACACGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGCGCTCAGC
1 CTTAGACACGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGCGCTCAGC
* * * * *
21381120 CGACCAGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCCTGTGTGCTGTCGATCC
66 CGACCAGAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCCTGCGTGCTGCCGACCC
* *
21381185 TACTGCCGCAACCCTCGATCCGATCCAAT
131 CACTGCCACAACCCTCGATCCGATCCAAT
** ** * *
21381214 CTTAGACTGGGAATGAACTCTGTATGCCTAA-CTCAACCCACGAAACGAGCGTGCGTA-CGCTGA
1 CTTAGACACGGAATGAACTCCATATGCCTAAGC-CAACCCACGAAACAAGCGTGCG-AGCGCTCA
*** * * * *
21381277 GCC-AGTTGGAAAGGCATAATGCGCAAGCCGGGGATTGACCTC-GTCCCCCTCTGCGTGCTGCC-
64 GCCGA-CCAGAAAGGCAGAATGCGCAAGCCAGGGATCGACC-CGGTCCCCCCCTGCGTGCTGCCG
* * * ****
21381339 AGCCCCGCTGCCACAACCCTCGGTCC-AGCTGGGG
127 A-CCCCACTGCCACAACCCTCGATCCGATC-CAAT
* * *
21381373 CTTAGACATGGAATGAACTCC-TATGCCTAAGCCATCCCATGAAAC
1 CTTAGACACGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAC
21381418 GGCCATGTGG
Statistics
Matches: 165, Mismatches: 32, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
158 25 0.15
159 138 0.84
160 2 0.01
ACGTcount: A:0.25, C:0.33, G:0.25, T:0.18
Consensus pattern (159 bp):
CTTAGACACGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGCGCTCAGC
CGACCAGAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCCTGCGTGCTGCCGACCC
CACTGCCACAACCCTCGATCCGATCCAAT
Found at i:21381566 original size:26 final size:26
Alignment explanation
Indices: 21381530--21381582 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21381520 CTGGTCTGAT
*
21381530 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21381556 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21381582 C
1 C
21381583 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21382281 original size:160 final size:155
Alignment explanation
Indices: 21381917--21382443 Score: 432
Period size: 160 Copynumber: 3.3 Consensus size: 155
21381907 TATCCTTAGA
** * * * *
21381917 AATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTATGCGAGCGATTAGCCTGTCG
1 AATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATGAGCCAGCCG
* * * **
21381982 GAGAGGCAGAATGCGCAAGCGGGGATTGGCTCGATCCCCCTACGTGCTGTCCATCCTGCTACCAC
66 GAGAGCCAGAATGCGCAAGCGGGGATCGGCCCGATCCCCCTACGTGCTGTCCATCCCACTACCAC
* ** * *
21382047 AATCCTCGGTCTGGTCTGATCTTAG
131 AACCCTCGGTCCAGTCTGACCCTAG
* * * *
21382072 ATTAGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCGTGCGGGCGCTGAGCCAGCC
1 AAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATGAGCCAGCC
* * *
21382137 GGAGAGCCATAATGCGTAAGCCGGGGATCGGCCCTATCCCCCTTTACGTGCTGT-CAGTCCCACT
65 GGAGAGCCAGAATGCGCAAG-CGGGGATCGGCCCGATCCCCC--TACGTGCTGTCCA-TCCCACT
* *
21382201 GCCACAACCCTCGGGTCCAG-CTGGGCCCTAG
126 ACCACAACCCTC-GGTCCAGTCT-GACCCTAG
* * * * * * * *
21382232 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-GAAAACGGGCGTGCGGGTGCTCAACCGGT
1 A-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AAACGAGCGTGCGGGCGATGAGCCAGC
* * * * ** * * * *
21382296 TGGAGAGGCAAAATGGGCAAGCTGGGGATCACCCCGGTCCCCCTTGCGTGCT-ACCGATCCTACT
64 CGGAGAGCCAGAATGCGCAAGC-GGGGATCGGCCCGATCCCCC-TACGTGCTGTCC-ATCCCACT
**** *
21382360 ACCACAACCCTCGGTCCAGTCCCTTCTTAG
126 ACCACAACCCTCGGTCCAGTCTGACCCTAG
* ** * *
21382390 ACTGGGAATGAACTCTATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCG
1 AAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCG
21382444 CTCAGCCGAC
Statistics
Matches: 298, Mismatches: 59, Indels: 27
0.78 0.15 0.07
Matches are distributed among these distances:
155 2 0.01
156 69 0.23
157 19 0.06
158 57 0.19
159 57 0.19
160 93 0.31
161 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (155 bp):
AATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATGAGCCAGCCG
GAGAGCCAGAATGCGCAAGCGGGGATCGGCCCGATCCCCCTACGTGCTGTCCATCCCACTACCAC
AACCCTCGGTCCAGTCTGACCCTAG
Found at i:21383119 original size:26 final size:26
Alignment explanation
Indices: 21383081--21383133 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21383071 GGCTCAAAAT
21383081 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21383107 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21383133 C
1 C
21383134 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21383624 original size:26 final size:26
Alignment explanation
Indices: 21383584--21383635 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
21383574 TGGTCCGATG
*
21383584 TTAGACTAGGAATGAACTCCATATGC
1 TTAGACTAGGAATGAAATCCATATGC
* * *
21383610 TTAGACTGGGGATGAAATCCGTATGC
1 TTAGACTAGGAATGAAATCCATATGC
21383636 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAAATCCATATGC
Found at i:21384976 original size:159 final size:156
Alignment explanation
Indices: 21384551--21385050 Score: 479
Period size: 158 Copynumber: 3.2 Consensus size: 156
21384541 TCTGTATGCT
* *
21384551 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CG
* * ** * * * *
21384616 ATCGGAGAGGTAGAATGCGCAAATCTAGGACCGACCCGATCCCCCCTGTGTGCTGTCAATCCTGC
65 GTC-GAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGATCCCCTCTGCGTGCTGTCGATCCTGC
* * * * *
21384681 TGCCACAACCCTTGATCCGGTCCGATCT
129 TGCCACAACCCTCGGTCTGGTCCGAGCA
* ** * *
21384709 TAGAC-TAGGAATAAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTTCGGGCGCTGAGCA
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC-
* * * * * * *
21384773 GGTCGAAGAGGCATAATGCGCAAG-CTGGGGATCCACCCGGTCCCCTTCTACGTGCTGCCGGT-C
64 GGTCG-AGAGGTAGAATGCGCAAGTC-GGGGATCGACCCGATCCCC-TCTGCGTGCTGTCGATCC
* *
21384836 TCGCTGCCACAACCCTCGGTCTGGAT-GGGGCA
126 T-GCTGCCACAACCCTCGGTCTGG-TCCGAGCA
* * *
21384868 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCGACGAAACGGGCGTGCGGGCGCTCAGTCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CG
** * *
21384933 GTCAGAGAGGTAGAATGCGCAAGTCGGGGATCGATTCGATCCCCTCTGCATGCTGTCGATCCTAC
65 GTC-GAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGATCCCCTCTGCGTGCTGTCGATCCTGC
* * * *
21384998 TGCCGCAACCCTCGGTCTGGTCTGATCT
129 TGCCACAACCCTCGGTCTGGTCCGAGCA
* *
21385026 TAGAC-TGGGAATAAACTCTGTATGC
1 TAGACAT-GGAATGAACTCCGTATGC
21385051 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 56, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
157 6 0.02
158 141 0.52
159 120 0.44
160 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCGG
TCGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGATCCCCTCTGCGTGCTGTCGATCCTGCTG
CCACAACCCTCGGTCTGGTCCGAGCA
Found at i:21385075 original size:26 final size:26
Alignment explanation
Indices: 21385024--21385076 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21385014 CTGGTCTGAT
**
21385024 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
21385050 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
21385076 C
1 C
21385077 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:21385759 original size:26 final size:26
Alignment explanation
Indices: 21385721--21385773 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21385711 GGCTCAAACT
21385721 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21385747 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21385773 C
1 C
21385774 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21386264 original size:26 final size:26
Alignment explanation
Indices: 21386226--21386278 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21386216 CCGATCTGAT
21386226 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21386252 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21386278 C
1 C
21386279 CTAATCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21386867 original size:158 final size:159
Alignment explanation
Indices: 21386251--21386875 Score: 575
Period size: 158 Copynumber: 4.0 Consensus size: 159
21386241 AACTCCATAT
* * *
21386251 GCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
21386316 CAGGCCGAAAAGGCAGAATACGCAAGCCGGGGACCGACTCGG--CCCC-CTGCGTGCTATCGATC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATC
* * * * *
21386378 CTACTGCCGCAACCCTCGGACCGGTCCA-A
131 CTACTGCCACAACCCTCGGTCC-GACTAGG
* * * * * * *
21386407 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * ** * * *
21386471 GCCGGTCGAAGAGGCATAATGCGCAAGCCAGGGATTGGCTTGGTCCCCCTCTGCGTGTTCCCGGT
65 GCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGAT
* * *
21386536 -CTCGCTGCCACAACCCTCGATCCAACTAGG
130 CCT-ACTGCCACAACCCTCGGTCCGACTAGG
* * *
21386566 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** ** *
21386631 -CGGTC-AGAGAGGTAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTATGTGCTGTCGGT
66 CCGGCCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGAT
*** * * *
21386694 CCCGTTACCATAACCCTCGGTCCGACTGGG
130 CCTACTGCCACAACCCTCGGTCCGACTAGG
* * * *
21386724 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGGAACGGGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * **
21386789 CCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGCCCAATCCCCCT-TGCGTGCTACCGATC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATC
* * *
21386853 CTACTGTCGCAACCCTCAGTCCG
131 CTACTGCCACAACCCTCGGTCCG
21386876 GTTAGATCTT
Statistics
Matches: 376, Mismatches: 82, Indels: 20
0.79 0.17 0.04
Matches are distributed among these distances:
155 1 0.00
156 87 0.23
157 1 0.00
158 163 0.43
159 123 0.33
160 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATC
CTACTGCCACAACCCTCGGTCCGACTAGG
Found at i:21386919 original size:26 final size:26
Alignment explanation
Indices: 21386883--21386935 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21386873 CCGGTTAGAT
21386883 CTTAGACTGGGAATAAACATCGTATG
1 CTTAGACTGGGAATAAACATCGTATG
* * *
21386909 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATAAACATCGTATG
21386935 C
1 C
21386936 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACATCGTATG
Found at i:21387455 original size:159 final size:158
Alignment explanation
Indices: 21387118--21387487 Score: 390
Period size: 158 Copynumber: 2.3 Consensus size: 158
21387108 AACTCCGTAT
* *
21387118 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGTCGGCACTCAG
* * * * ** * * *
21387183 TCGGTCAGAAAGGCATAATGCGTAAGCTGAGGACCGGCCCGGTCCCCCCTGCATGCTGTCGATCC
66 TCAGCCAGAAAGGCATAATACGCAAGCCAAGGACCGACCCGATCCCCCCTGCATGCTGCCGATCC
* *
21387248 TGCTGTCACAATCCTCGGTCCGGTCCGG
131 TGCTGCCACAACCCTCGGTCCGGTCCGG
* * * * * *
21387276 TCTTAGA-TTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGTGT-TCGGCTACTG
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGTCGGC-ACTC
** * *
21387339 AGTCAGCCA-AAGAGGCATAATACGCAAGCCAAGGATTGACTCGATCTCCCTCTGCATGCTGCC-
64 AGTCAGCCAGAA-AGGCATAATACGCAAGCCAAGGACCGACCCGATC-CCCCCTGCATGCTGCCG
* * * *
21387402 AGTCCTGTTGCCATAACCCTTGGTCCGG-CTGGG
127 A-TCCTGCTGCCACAACCCTCGGTCCGGTC-CGG
* *
21387435 GCTTAGACATGGAATGAACTCCGTATGCCTAACCCAACCCACGAAATGAGCGT
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGT
21387488 ACAGACGCTT
Statistics
Matches: 171, Mismatches: 34, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
157 7 0.04
158 82 0.48
159 81 0.47
160 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGTCGGCACTCAG
TCAGCCAGAAAGGCATAATACGCAAGCCAAGGACCGACCCGATCCCCCCTGCATGCTGCCGATCC
TGCTGCCACAACCCTCGGTCCGGTCCGG
Found at i:21387543 original size:159 final size:157
Alignment explanation
Indices: 21387380--21387714 Score: 397
Period size: 159 Copynumber: 2.1 Consensus size: 157
21387370 AGGATTGACT
* *** * *
21387380 CGATCTCCCTCTGCATGCTGCCAGTCCTGTTGCCATAACCCTT-GGTCCGGCTGGGGCTTAGACA
1 CGATC-CCCTCTGCGTGCTGCCAGTCCCACTACCACAA-CCTTAGGTCCGGCTGGGGCTTAGACA
* * * *
21387444 TGGAATGAACTCCGTATGCCTAACCCAACCCACGAAATGAGCGTACAGACGCTTAGCCGA-CTGG
64 TGGAAGGAACTCCCTATGCCTAACCCAACCCAC-AAACGAGCGTACAGACGCTCAGCCGATC-GG
21387508 AGAGGCAGAATGCGTAAGCTGGGGATCGGCC
127 AGAGGCAGAATGCGTAAGCTGGGGATCGGCC
*** * *
21387539 CGATCCCCCTCTGCGTGCTGTTGGTCCCACTACCACAACCTTAGGTCCGGTTGGGGCTTAGACTT
1 CGAT-CCCCTCTGCGTGCTGCCAGTCCCACTACCACAACCTTAGGTCCGGCTGGGGCTTAGACAT
* * * *** * *
21387604 GGAAGGAAGTCCCTATGCCTAAGCCAACCCACAAACGGGCGTGTGGGCGCTCAGTCGATCGGAGA
65 GGAAGGAACTCCCTATGCCTAACCCAACCCACAAACGAGCGTACAGACGCTCAGCCGATCGGAGA
21387669 GGCAGAATGCGTAAGCTGGGGATCGGCC
130 GGCAGAATGCGTAAGCTGGGGATCGGCC
21387697 CGATCCCC-CTGCGTGCTG
1 CGATCCCCTCTGCGTGCTG
21387715 TTGATCCTGC
Statistics
Matches: 150, Mismatches: 23, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
156 10 0.07
157 4 0.03
158 59 0.39
159 76 0.51
160 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (157 bp):
CGATCCCCTCTGCGTGCTGCCAGTCCCACTACCACAACCTTAGGTCCGGCTGGGGCTTAGACATG
GAAGGAACTCCCTATGCCTAACCCAACCCACAAACGAGCGTACAGACGCTCAGCCGATCGGAGAG
GCAGAATGCGTAAGCTGGGGATCGGCC
Found at i:21387780 original size:26 final size:26
Alignment explanation
Indices: 21387751--21387800 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
21387741 CCGGTTCGAT
*
21387751 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACCCCGTACG
*
21387777 CTTAGACTGGGGATGAACCCCGTA
1 CTTAGACTGGGAATGAACCCCGTA
21387801 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTACG
Found at i:21387989 original size:26 final size:26
Alignment explanation
Indices: 21387960--21388012 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21387950 CCGGTCTGAT
21387960 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
21387986 CTTATACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21388012 C
1 C
21388013 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21388160 original size:867 final size:866
Alignment explanation
Indices: 21385993--21388164 Score: 2696
Period size: 867 Copynumber: 2.5 Consensus size: 866
21385983 ATCTTGCTAC
* * *
21385993 CGCAACCCTCAGTCCGGTTAGAGCTTAGACTAGGAATGAACTCCGCATGCTTAGACTGGGGATGA
1 CGCAACCCTCAGTCCGGTTAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGA
* * * * * *
21386058 ACTTCGTATGCCTAACTCAACCCACGAAACGGGCATACGGGCGCTTAGTCAGTCGGAGAGGCCGG
66 ACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCCGG
* *** * * *
21386123 TCGAAGAGGCAGAATGCGCAAGCCGGGGATAAACTCGATCCCTCCCTACGTGCTATCGATCCTGC
131 TCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGT-CCACCCTACGTGCTA-CGATCCTGC
* * *
21386188 TGCTGGTCCTACTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATGC
194 TGCTGGTCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
21386253 TTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGAAACGAGTGTGCGGGCGCTCAG-C
259 TTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC
* * * * * *
21386317 AGGCCGAAAAGGCAGAATACGCAAGCCGGGGACCGACTCGG--CCCCCTGCGTGCTATCGATCCT
324 -GGCCGGAAAGGCAGAATGCGCAAGCCAGGGACGGCCT-GGTCCCCCCTGCGTGCTGTCGATCCT
* * * * *
21386380 ACTGCCGCAACCCTCGGACCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
387 GCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
* * * * * *
21386445 CCACGAAATGAGCGTTCGGGCGTTGAGCCGGTCGAAGAGGCATAATGCGCAAGCCAGGGATTGGC
452 CCACGAAATGAGCGTTCGGGCGTTGAGCCAGCCAAAGAGGCATAATACGCAAGCCAAGGATTGAC
* * * * *
21386510 TTGGTCCCCCTCTGCGTGTTCCCGGTCTCGCTGCCACAACCCTCGATCCAACTAGGGCTTAGACA
517 TCGATCCCCCTCTGCATGCTCCCAGTCTCGCTGCCACAACCCTCGATCCAACTAGGGCTTAGACA
* * * * * * *
21386575 TGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGTTCAGCGGTCAGAG
582 TGGAATGAACTCCCTATGCCTAACCCAACCCACAAAACGAGCGTACAGACGTTCAGCCGACAGAG
* * * ** *
21386640 AGGTAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTATGTGCTGTCGGTCCCGTTACCAT
647 AGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTACGTGCTGTCGGTCCCACTACCAC
* * *
21386705 AACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGGAA
712 AACCCTAGGTCCGACTGGGGCTTAGACATGGAAGGAACTCCCTATGCCTAAGCCAACCCACGAAA
*
21386770 CGGGCATACGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGCCCAATCCC
777 CGGGCATACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAATCCC
21386835 CCTTGCGTGCTACCGATCCTACTGT
842 CCTTGCGTGCTACCGATCCTACTGT
*
21386860 CGCAACCCTCAGTCCGGTTAGATCTTAGACTGGGAATAAACAT-CGTATGCTTAGACTGGGGATG
1 CGCAACCCTCAGTCCGGTTAGATCTTAGACTGGGAATGAAC-TCCGTATGCTTAGACTGGGGATG
* * *
21386924 AACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGGTCGAAGAGGTCG
65 AACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCCG
* * * *
21386989 GTTGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGT-CACCCCTTTCGTGCTACCGATCCT
130 GTCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCA-CCC-TACGTGCTA-CGATCCT
* * *
21387053 GCTGCTGGTCCTGCTACCACAACCCTCGATCCGGTCAGATCTTAGATTGGGAATGAACTCCGTAT
192 GCTGCTGGTCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* *
21387118 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAG
257 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
21387183 TCGGTCAGAAAGGCATAATGCGTAAG-CTGAGGACCGGCCCGGTCCCCCCTGCATGCTGTCGATC
322 TCGGCCGGAAAGGCAGAATGCGCAAGCCAG-GGA-CGGCCTGGTCCCCCCTGCGTGCTGTCGATC
* * * *
21387247 CTGCTGTCACAATCCTCGGTCCGGTCCGGTCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCA
385 CTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
* * *
21387312 ACCCATGAAATGAGTGTTC-GGC-TACTGAGTCAGCCAAAGAGGCATAATACGCAAGCCAAGGAT
450 ACCCACGAAATGAGCGTTCGGGCGT--TGAGCCAGCCAAAGAGGCATAATACGCAAGCCAAGGAT
* * * * * * ** *
21387375 TGACTCGATCTCCCTCTGCATGCTGCCAGTC-CTGTTGCCATAACCCTTGGTCCGGCTGGGGCTT
513 TGACTCGATCCCCCTCTGCATGCTCCCAGTCTC-GCTGCCACAACCCTCGATCCAACTAGGGCTT
* * *
21387439 AGACATGGAATGAACTCCGTATGCCTAACCCAACCCACGAAATGAGCGTACAGACGCTT-AGCCG
577 AGACATGGAATGAACTCCCTATGCCTAACCCAACCCACAAAACGAGCGTACAGACG-TTCAGCCG
* * * *
21387503 ACTGGAGAGGCAGAATGCGTAAG-CTGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTTGGTCCC
641 AC-AGAGAGGCAGAATGCGCAAGTC-GGGGATCGGCCCGATCCCCCTCTACGTGCTGTCGGTCCC
* ** * *
21387567 ACTACCACAACCTTAGGTCCGGTTGGGGCTTAGACTTGGAAGGAAGTCCCTATGCCTAAGCCAAC
704 ACTACCACAACCCTAGGTCCGACTGGGGCTTAGACATGGAAGGAACTCCCTATGCCTAAGCCAAC
* ** * * * * *
21387632 CCAC-AAACGGGCGTGTGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGC
769 CCACGAAACGGGCATACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGC
* *** *
21387696 CCGATCCCCC-TGCGTGCTGTTGATCCTGCTGT
834 CCAATCCCCCTTGCGTGCTACCGATCCTACTGT
* * *
21387728 CGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGGATGA
1 CGCAACCCTCAGTCCGGTTAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGA
** * ** * *
21387793 ACCCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCCGCTCAACCGGTCGGGGAGGCCGA
66 ACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCCGG
* * * * * *
21387858 CCGAAGAGGCAGAATACGTAAGTCAGGGATCGGCCCGGTCCACCCTGCGTGATACAGATCCTGCT
131 TCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCACCCTACGTGCTAC-GATCCTGCT
* * * * *
21387923 GCTGGTCCTGCTATCGTAACCATCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCT
195 GCTGGTCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
21387988 TATACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAGTCG
260 TAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* * * * *
21388053 GCCGGAGAGACAGAATGCACAAGCCAGGGATTGGCCTGGTCCCCCCTGCGTGCTGCCGATCCTGC
325 GCCGGAAAGGCAGAATGCGCAAGCCAGGGA-CGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGC
* * *
21388118 TGTCGTAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCT
389 TGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCT
21388165 ATTTACTTAG
Statistics
Matches: 1108, Mismatches: 179, Indels: 36
0.84 0.14 0.03
Matches are distributed among these distances:
865 1 0.00
866 6 0.01
867 525 0.47
868 178 0.16
869 285 0.26
870 113 0.10
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (866 bp):
CGCAACCCTCAGTCCGGTTAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGA
ACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCCGG
TCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCACCCTACGTGCTACGATCCTGCTG
CTGGTCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
AGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGG
CCGGAAAGGCAGAATGCGCAAGCCAGGGACGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTG
TCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
GAAATGAGCGTTCGGGCGTTGAGCCAGCCAAAGAGGCATAATACGCAAGCCAAGGATTGACTCGA
TCCCCCTCTGCATGCTCCCAGTCTCGCTGCCACAACCCTCGATCCAACTAGGGCTTAGACATGGA
ATGAACTCCCTATGCCTAACCCAACCCACAAAACGAGCGTACAGACGTTCAGCCGACAGAGAGGC
AGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTACGTGCTGTCGGTCCCACTACCACAACC
CTAGGTCCGACTGGGGCTTAGACATGGAAGGAACTCCCTATGCCTAAGCCAACCCACGAAACGGG
CATACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAATCCCCCTT
GCGTGCTACCGATCCTACTGT
Found at i:21388861 original size:26 final size:26
Alignment explanation
Indices: 21388825--21388877 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21388815 GGCTCAAAAT
21388825 CTTAGACATCGAATGAACTCCATATG
1 CTTAGACATCGAATGAACTCCATATG
*
21388851 CTTAGACATCGAATGAACTCCGTATG
1 CTTAGACATCGAATGAACTCCATATG
21388877 C
1 C
21388878 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
CTTAGACATCGAATGAACTCCATATG
Found at i:21389216 original size:158 final size:159
Alignment explanation
Indices: 21388850--21389288 Score: 589
Period size: 158 Copynumber: 2.8 Consensus size: 159
21388840 AACTCCATAT
* * * * *
21388850 GCTTAGACATCGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAG
* * * * *
21388915 CCGACCGGAGAGGTAGAATACGCAAGCCGGGGATC-AGCCCGGTCCCCCTCTGCGTGATGCCGGT
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCTCTGCGTGCTACCGGT
21388979 CTCGCTGCCACAACCCTCGATCCGACTGGG
130 CTCGCTGCCACAACCCTCGATCCGACTGGG
* * *
21389009 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAGATGGGTGTGGGGGCGCTCAA
1 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAG
* *
21389074 CCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGGTC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGGTC
21389139 -CGCTGCCACAACCCTC-AGTCCGACTGGG
131 TCGCTGCCACAACCCTCGA-TCCGACTGGG
* * * * * *
21389167 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCGAACCCACGAAATGGGTGTGCGGTCTCTCAG
1 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAG
* * * * * *
21389232 TCGGCCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGCCTGGTCCCCC-CTACGTGCT
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCT
21389289 GTCGCAACCC
Statistics
Matches: 246, Mismatches: 32, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
157 9 0.04
158 123 0.50
159 113 0.46
160 1 0.00
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.17
Consensus pattern (159 bp):
GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGGTC
TCGCTGCCACAACCCTCGATCCGACTGGG
Found at i:21389355 original size:26 final size:26
Alignment explanation
Indices: 21389314--21389392 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
21389304 CCGATCCGAT
* *
21389314 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
*
21389340 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
* * *
21389366 TTTGGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
21389392 C
1 C
21389393 CTATGTAAAC
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCTGTATG
Found at i:21390437 original size:26 final size:26
Alignment explanation
Indices: 21390395--21390447 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21390385 GGCTCAAAAT
21390395 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21390421 CTTAGACAT-GGATTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21390447 C
1 C
21390448 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21391794 original size:26 final size:26
Alignment explanation
Indices: 21391743--21391795 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21391733 TCGGTCTGAT
**
21391743 CTTAGACTGGGAATGAACTGCATATG
1 CTTAGACTGGGAATGAACACCATATG
* *
21391769 CTTAGACTGGGGATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCATATG
21391795 C
1 C
21391796 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:21392669 original size:26 final size:26
Alignment explanation
Indices: 21392640--21392692 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21392630 CCGATCTGAT
*
21392640 CTTAGACTCTGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
* *
21392666 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
21392692 C
1 C
21392693 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCGTATG
Found at i:21393408 original size:26 final size:26
Alignment explanation
Indices: 21393370--21393422 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21393360 GGCTCAAACT
21393370 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21393396 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21393422 C
1 C
21393423 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21393666 original size:165 final size:164
Alignment explanation
Indices: 21393421--21393745 Score: 440
Period size: 165 Copynumber: 2.0 Consensus size: 164
21393411 AACTCCGTAT
* *** *
21393421 GCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAGCCGGCTGGAGAGGCAGAATGCGCAAG
1 GCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGGCAAAAGAGGCAAAATGCGCAAG
* * * *
21393486 CCGGGGATTGGCCCGGTCCCCCTCTGCGTGCTGCC-AGTCCTGCTGCCACAACCTTCGATCTGGC
66 CCGGGGATCGGCCCGGTCCCCC-CTGCATGATGCCGA-TCCTGCTGCCACAACCCTCGATCTGG-
21393550 TCAGA-CTTAGAC-ATGGAATGAACTCCCTATGCCTAA
128 TCAGATCTTAGACTA-GGAATGAACTCCCTATGCCTAA
* *
21393586 GCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCAAAAGAGGCAAAATGCGCAAG
1 GCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGGCAAAAGAGGCAAAATGCGCAAG
* * * * *
21393651 CCGGGGATCGGCCCGGTCCCCCCTGCATGATGCCGATCTTGTTGCCGCAACCCTCGGTCTGGTCT
66 CCGGGGATCGGCCCGGTCCCCCCTGCATGATGCCGATCCTGCTGCCACAACCCTCGATCTGGTCA
*
21393716 GATCTTAGACTAGGAATGAACTCCGTATGC
131 GATCTTAGACTAGGAATGAACTCCCTATGC
21393746 TTAGATTGGG
Statistics
Matches: 140, Mismatches: 17, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
163 4 0.03
164 55 0.39
165 81 0.58
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.18
Consensus pattern (164 bp):
GCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGGCAAAAGAGGCAAAATGCGCAAG
CCGGGGATCGGCCCGGTCCCCCCTGCATGATGCCGATCCTGCTGCCACAACCCTCGATCTGGTCA
GATCTTAGACTAGGAATGAACTCCCTATGCCTAA
Found at i:21393946 original size:196 final size:196
Alignment explanation
Indices: 21393696--21394061 Score: 493
Period size: 196 Copynumber: 1.9 Consensus size: 196
21393686 ATCTTGTTGC
* * * * * * * *
21393696 CGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGA-TTGGGGATG
1 CGCAACCCTCGATCCGATCCGATCTTAGACTAGGAAGGAACTCCATATGCTTAGACAT-GGAATG
* *
21393760 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAG
65 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAG
* *
21393825 AATACGTAAGCCGAGGATTGGCCCGATCCCCCATGCGTGCTACTGATCCTGCTGCTGGTTCTACT
130 AATACGCAAGCCGAGGATCGGCCCGATCCCCCATGCGTGCTACTGATCCTGCTGCTGGTTCTACT
21393890 GT
195 GT
* *
21393892 CGCAACCCTCGATCCGATCCGATCTTAGA-TGGGGAAGGAACTTCATATGCTTAGACATGGAATG
1 CGCAACCCTCGATCCGATCCGATCTTAGACT-AGGAAGGAACTCCATATGCTTAGACATGGAATG
* * *
21393956 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCTGGAGAGGCAG
65 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAG
** * * * *
21394021 AATGGGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCT
130 AATACGCAAGCCGAGGATCGGCCCGATCCCCCATGCGTGCT
21394062 GTCAATCCTG
Statistics
Matches: 145, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
195 1 0.01
196 143 0.99
197 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.20
Consensus pattern (196 bp):
CGCAACCCTCGATCCGATCCGATCTTAGACTAGGAAGGAACTCCATATGCTTAGACATGGAATGA
ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAGA
ATACGCAAGCCGAGGATCGGCCCGATCCCCCATGCGTGCTACTGATCCTGCTGCTGGTTCTACTG
T
Found at i:21394356 original size:159 final size:158
Alignment explanation
Indices: 21393940--21394343 Score: 465
Period size: 159 Copynumber: 2.6 Consensus size: 158
21393930 AACTTCATAT
* *
21393940 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAG
* * * * * * *
21394005 CCGGCTGGAGAGGCAGAATGGGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCAATCC
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCAATCC
* **
21394070 TGCTACCACAACACTCGGTCCGGTCTGA
131 CGCTACCACAACACTCGGTCCGAACTGA
* * * * *
21394098 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-TCGGGCGTTG
1 GCTTAGACATA-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGT-GGGTGCTC
* * *
21394161 AGCCAGCCGGAGATGC-GTAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGTGTGCTGCCT
64 AGCCAGCCGGAGAGGCAG-AATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTGCCA
* * * *
21394225 ATCCCGCTGCCACAACCCTCGGT-CTAACTGGG
127 ATCCCGCTACCACAACACTCGGTCCGAACT-GA
* * * * * *
21394257 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCATCCCATGAAATGGGCATGTGGGTGCTCAG
1 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAG
21394322 CCAGCCGGAGAGGCAGAATGCG
66 CCAGCCGGAGAGGCAGAATGCG
21394344 TAGGCCAGGG
Statistics
Matches: 202, Mismatches: 36, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
157 2 0.01
158 97 0.48
159 99 0.49
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAG
CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCAATCC
CGCTACCACAACACTCGGTCCGAACTGA
Found at i:21394399 original size:26 final size:26
Alignment explanation
Indices: 21394370--21394422 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21394360 CCGGTTTGAT
21394370 CTTAGAC-TGGGAATGAACTCCGGATG
1 CTTAGACAT-GGAATGAACTCCGGATG
*
21394396 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGGATG
21394422 C
1 C
21394423 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGGATG
Found at i:21394838 original size:26 final size:26
Alignment explanation
Indices: 21394809--21394861 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21394799 CCGGTCTGAT
21394809 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
21394835 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21394861 C
1 C
21394862 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21395193 original size:26 final size:26
Alignment explanation
Indices: 21395154--21395204 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21395144 GGTCCGATCA
*
21395154 TAGACTGGGAATGAACTTTGTATGCT
1 TAGACTGGGAATGAACTCTGTATGCT
*
21395180 TAGACTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGTATGC
21395205 CTAATTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCT
Found at i:21396712 original size:158 final size:158
Alignment explanation
Indices: 21396226--21396755 Score: 481
Period size: 158 Copynumber: 3.4 Consensus size: 158
21396216 CTACCGGTCT
* * *
21396226 TGCTGCCACAACCCTCG-GTCCG-GCTGGGGT-TTAGACATGGAATGAACTCCGTATGCCTAAGC
1 TGCTGCCACAACCCTCGAGTCCGATCT--GATCTTAGACAGGGAATGAACTCCGTATGCCTAAGC
* * * * *
21396288 CAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGTCGGGGAC
64 CAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGAAAGTCGGGGAT
* * *
21396353 TGGCCCGATCCCCCCTACGTGCT-ATCGATCC
129 TGG-CCGGTCCCCCCTGCGTGCTGCT-GATCC
* * * * *
21396384 TACTACCACAACCCT-TAGTTCGATCTGATCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTC
1 TGCTGCCACAACCCTCGAGTCCGATCTGATCTTAGACA-GGGAATGAACTCCGTATGCCTAAGCC
* * * * * * * * * * *
21396447 AACCCATGAAACGAGCGTGCGTGTGCTGAGCTGACCAGAAAGGCATAATGCGAAAGCCAGCGATC
65 AACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGAAAGTCGGGGATT
* * * *
21396512 GGTCCGGTCCCCTCTGCGTACTGCCGGT-C
130 GG-CCGGTCCCCCCTGCGTGCTGCTGATCC
* * *
21396541 TCGTTGCCACAACCCTCGA-TCCGGT-TGGCA-CTTAGACAGGGAATGAACTCCCTATGCCTAAG
1 T-GCTGCCACAACCCTCGAGTCCGATCT-G-ATCTTAGACAGGGAATGAACTCCGTATGCCTAAG
* * *
21396603 CCAACCCACGAAACG-GACGTGCGGGTGCTCAGCCGATCGGAGAGGCCGAATGCGTAAGTCGGGG
63 CCAACCCACGAAACGAG-CGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGAAAGTCGGGG
*
21396667 ATTGGCCTGGTCCCCCCTGCGTGCTGCTAATCC
127 ATTGGCC-GGTCCCCCCTGCGTGCTGCTGATCC
* * ** * *
21396700 TGCTGTCGCAACCCTCG-GTTTGATCTGATCTTAGACTGGGAATGAACTCTGTATGC
1 TGCTGCCACAACCCTCGAGTCCGATCTGATCTTAGACAGGGAATGAACTCCGTATGC
21396756 TTCGACTATG
Statistics
Matches: 288, Mismatches: 68, Indels: 32
0.74 0.18 0.08
Matches are distributed among these distances:
157 10 0.03
158 270 0.94
159 8 0.03
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
TGCTGCCACAACCCTCGAGTCCGATCTGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCA
ACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGAAAGTCGGGGATTG
GCCGGTCCCCCCTGCGTGCTGCTGATCC
Found at i:21398016 original size:26 final size:26
Alignment explanation
Indices: 21397965--21398017 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21397955 CTGGTCCGAT
*
21397965 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21397991 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21398017 C
1 C
21398018 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21398071 original size:197 final size:196
Alignment explanation
Indices: 21397736--21398120 Score: 506
Period size: 197 Copynumber: 2.0 Consensus size: 196
21397726 ATGCTGTCGA
* * ** *
21397736 TCCTGCTGCCGTAACCTTCGGTCTGGTTTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC
1 TCCTGCTACCGCAACCTTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGAC
* * * * *
21397801 TGGTGATGAACTTCATATGCCTAAGTCAACCCATGGAACGAACGTGCAGGCGCTCAGCCGGCTGG
66 TGGTAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAACGTGCAGGCGCTCAGCCGGCTGA
21397866 AGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGTGTGCTGTCGATCCTATTGCT
131 AGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCC-CTGTGTGCTGTCGATCCTATTGCT
21397931 GG
195 GG
* *
21397933 TCCTGCTACCGCAAGCC-TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCATATGCTTAGA
1 TCCTGCTACCGCAA-CCTTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGA
* * * * * * *
21397997 CATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTGCGGGCGTTCAG-TGGGT
65 C-TGGTAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAACGTGCAGGCGCTCAGCCGGCT
* * * *
21398060 CGAAGAGGCAGAATGCGTAAGTCGAGGATCGGCTCGATCCCCCCTGTGTGCTGTCGATCCT
129 -GAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGTGTGCTGTCGATCCT
21398121 GCAGTCGCAA
Statistics
Matches: 162, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
196 21 0.13
197 136 0.84
198 5 0.03
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (196 bp):
TCCTGCTACCGCAACCTTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGAC
TGGTAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAACGTGCAGGCGCTCAGCCGGCTGA
AGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGTGTGCTGTCGATCCTATTGCTG
G
Found at i:21398302 original size:158 final size:158
Alignment explanation
Indices: 21397991--21398491 Score: 369
Period size: 158 Copynumber: 3.2 Consensus size: 158
21397981 ACTTCATATG
* * * **
21397991 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-GAGCTTGCGGGCGTTCA
1 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCATCAAACAG-GCGTGCGGGCACTCA
*** ** * * * * * **
21398054 GTGGGTCGAAGAGGCAGAATGCGTAAGTC-GAGGATCG-GCTCGATCCCCCCTGTGTGCTG-TCG
64 ACCGACCGAAGAGGCAGAATGCGAAAGCCAG-GGATCGACCT-GGTCCCCCTTACGTGCTGCT-G
* * * * *
21398116 ATCCTGCAGTCGCAACCCTCGGTTCGGTTTGAT
126 ATCCCGCTGCCACAACCCTCGGTCCGGTTTGAT
* * * * *
21398149 CTTAGACTGGGAATGAACTCTGTATGTCTAAGTCAACCCA-CAAA-ATGAGCGTTCGGGCGCTGA
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATCAAACA-G-GCGTGCGGGCACTCA
* ** * *
21398212 GCCGACCGGGGAGGCATAATGCGAAAGCCAGGGATC-AGCAC-GGTCCCCCTCTGCGTGCTGTCT
64 ACCGACCGAAGAGGCAGAATGCGAAAGCCAGGGATCGA-C-CTGGTCCCCCT-TACGTGCTG-CT
* **
21398275 G-TCCCGCTGCCACAACCCTC-GTCCGGTTGGGG
125 GATCCCGCTGCCACAACCCTCGGTCCGGTTTGAT
** * *
21398307 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGTACTCAA
1 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCATCAAACAGGCGTGCGGGCACTCAA
* * *
21398371 CCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCTTACGTGCTGCTGATCC
65 CCGACCGAAGAGGCAGAATGCGAAAGCCAGGGATCGACCTGGTCCCCCTTACGTGCTGCTGATCC
* * *** * *
21398436 TGCTGCCGCAACCCTCGGTCTAATCTAAT
130 CGCTGCCACAACCCTCGGTCCGGTTTGAT
21398465 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCTGTATGC
21398492 TTAGATTGGG
Statistics
Matches: 267, Mismatches: 58, Indels: 36
0.74 0.16 0.10
Matches are distributed among these distances:
156 3 0.01
157 31 0.12
158 199 0.75
159 30 0.11
160 3 0.01
161 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATCAAACAGGCGTGCGGGCACTCAAC
CGACCGAAGAGGCAGAATGCGAAAGCCAGGGATCGACCTGGTCCCCCTTACGTGCTGCTGATCCC
GCTGCCACAACCCTCGGTCCGGTTTGAT
Found at i:21399412 original size:26 final size:26
Alignment explanation
Indices: 21399371--21399423 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21399361 CCAGTCTGAT
21399371 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21399397 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
21399423 C
1 C
21399424 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21399504 original size:185 final size:191
Alignment explanation
Indices: 21399185--21399682 Score: 600
Period size: 185 Copynumber: 2.6 Consensus size: 191
21399175 TGGCTCAAAC
* * * *
21399185 TCTTAGACTGTGAATAAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
21399250 CATGAAACGAGCGTACGGGTGCTCAATCAGCCAGAGAGGCAGAATGTGCAAGCTGGGGATCAGCC
66 CATGAAACGAGCGTGCGGGCGCTCAATC-GGCAGAGAGGCAGAATGCGCAAGCCGGGGATCAACC
* * **
21399315 CGGTCCCCCCTT-A-CT-T-G-CTAC-C-GATCCTGCTACCGTAAACCTCGGTCC-AGTCTGA
130 CGGTCCCCCCTTAAGCTATCGACTACGCTGATCCTGCTACCATAAACCTCGATCCGA-TCCAA
* *
21399370 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TAGGGATGAACTCCGTATGCCTAAGTCAAC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
21399434 CCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCAAC
65 CCATGAAACGAGCGTGCGGGCGCTCAATCGG-CAGAGAGGCAGAATGCGCAAGCCGGGGATCAAC
* *
21399499 CCGGTCCCTCCTTACATGCTATCGATCCTACTGCTGGTCCTGCTACCATAAACCTCGATCCGATC
129 CCGGTCCCCCCTTA-A-GCTATCGA--CTAC-GCTGATCCTGCTACCATAAACCTCGATCCGATC
21399564 CAA
189 CAA
* *
21399567 TCTTAGACTAGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
21399632 CATGAAATGATCGTGCGGGCGCTCAACCGGCCGAGAGGCAGAATGCGCAAG
66 CATGAAACGAGCGTGCGGGCGCTCAATCGGCAGAGAGGCAGAATGCGCAAG
21399683 TCAGGGACTG
Statistics
Matches: 264, Mismatches: 33, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
184 2 0.01
185 121 0.46
187 1 0.00
189 2 0.01
190 1 0.00
191 1 0.00
194 4 0.02
196 20 0.08
197 110 0.42
198 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (191 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CATGAAACGAGCGTGCGGGCGCTCAATCGGCAGAGAGGCAGAATGCGCAAGCCGGGGATCAACCC
GGTCCCCCCTTAAGCTATCGACTACGCTGATCCTGCTACCATAAACCTCGATCCGATCCAA
Found at i:21399606 original size:26 final size:26
Alignment explanation
Indices: 21399568--21399620 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21399558 CCGATCCAAT
*
21399568 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21399594 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
21399620 C
1 C
21399621 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21399878 original size:157 final size:157
Alignment explanation
Indices: 21399593--21399880 Score: 386
Period size: 157 Copynumber: 1.8 Consensus size: 157
21399583 AACTCTGTAT
** * * *
21399593 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGATCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCCATGCCTAAGCCAACCCACGAAAGGATCGTGCAGGCGCTCAA
* * * * **
21399658 CCGGCCGAGAGGCAGAATGCGCAAGTCAGGGACTGGCCCAGTCCCCCCCTGCATGCTGTCGATCC
66 CCAGCCGAGAGGAAGAATGCGCAAGCCAGGGACTGGCCCAGTCCCCCCCTACATGCTACCGATCC
21399723 TGCTACCACAACCCTTATTCGGCTGGG
131 TGCTACCACAACCCTTATTCGGCTGGG
21399750 GCTTAGACATGGAATGAACTCCCCATGCCTAAGCCAACCCACGAAACGGA-CGTGCAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCCATGCCTAAGCCAACCCACGAAA-GGATCGTGCAGGCGCTCA
* * *
21399814 ACCAATCGGAGAGGAAGAATGCGCAAGCCAGGGA-TCGGCCC-GAT-CCCCCCTACGTGCTACCG
65 ACC-AGCCGAGAGGAAGAATGCGCAAGCCAGGGACT-GGCCCAG-TCCCCCCCTACATGCTACCG
21399876 ATCCT
127 ATCCT
21399881 ACTGTCGCAA
Statistics
Matches: 113, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
157 80 0.71
158 33 0.29
ACGTcount: A:0.25, C:0.33, G:0.26, T:0.16
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCCATGCCTAAGCCAACCCACGAAAGGATCGTGCAGGCGCTCAA
CCAGCCGAGAGGAAGAATGCGCAAGCCAGGGACTGGCCCAGTCCCCCCCTACATGCTACCGATCC
TGCTACCACAACCCTTATTCGGCTGGG
Found at i:21399938 original size:26 final size:26
Alignment explanation
Indices: 21399909--21399961 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21399899 CTAGTCCGAT
*
21399909 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
21399935 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
21399961 C
1 C
21399962 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:21400156 original size:26 final size:26
Alignment explanation
Indices: 21400118--21400170 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21400108 TCGGTCTGAT
21400118 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21400144 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
21400170 C
1 C
21400171 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21400661 original size:26 final size:26
Alignment explanation
Indices: 21400620--21400672 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21400610 CCAATCTGAT
21400620 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
21400646 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21400672 C
1 C
21400673 CTAAGTCATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21401084 original size:158 final size:158
Alignment explanation
Indices: 21400790--21401329 Score: 552
Period size: 158 Copynumber: 3.4 Consensus size: 158
21400780 TGTCGATCCC
* * * * * * * * *
21400790 GCTGTCGGTCCTACTGCTATAACCCTCGGTCCAGCCGGGTTTTAGACAT-GGAATGAACTCCGTA
1 GCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGAC-TGGGAATGAACTCCGTA
* * *
21400854 TGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCTGGCTGGAGAGGCAGAATGCGCAA
65 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCACAA
** * * * *
21400919 GTTGGGGACCGACCCGATCCCCCCTACGT
130 GCCGGGGATCGGCCCGATCCCCCCTGCAT
* *
21400948 GCTGTCGATCCTGCTGCCACAACACTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTAT
1 GCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * * *
21401013 GCCTAAGTCAACCCACGAAACGAGTGTTCGGGTGCTGAGCCGGCCGGAGAGGCATAATGCACAAG
66 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCACAAG
*
21401078 CCGGGGATCGGTCCGATCCCCCTCTGCAT
131 CCGGGGATCGGCCCGATCCCCC-CTGCAT
* * * * * * ** *
21401107 GCTATCGGTCCCGCTACCACAACCCTCGATCC-GACTGGGGCTTAGAC-GTGGAATGAGCTCCGT
1 GCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCT-GATCTTAGACTG-GGAATGAACTCCGT
* * * *
21401170 ATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAACTGGCCGAAGAGGCAGAATGCACA
64 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCACA
* *
21401235 AGCCGGGGATCGGCTCGAT-CCGCCTGCAT
129 AGCCGGGGATCGGCCCGATCCCCCCTGCAT
* * * * * *
21401264 GCTG-CTGATCTTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTAGGAGTGAACTCTGTA
1 GCTGTC-GATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
21401327 TGC
65 TGC
21401330 TTAGACTGGG
Statistics
Matches: 307, Mismatches: 68, Indels: 16
0.79 0.17 0.04
Matches are distributed among these distances:
156 25 0.08
157 30 0.10
158 131 0.43
159 121 0.39
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (158 bp):
GCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCACAAG
CCGGGGATCGGCCCGATCCCCCCTGCAT
Found at i:21401192 original size:159 final size:156
Alignment explanation
Indices: 21400831--21401255 Score: 492
Period size: 159 Copynumber: 2.7 Consensus size: 156
21400821 CAGCCGGGTT
*
21400831 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCT
1 TTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCT
* * ** * * * * *
21400896 GGCTGGAGAGGCAGAATGCGCAAGTTGGGGACCGACCCGATCCCCCCTACGTGCTGTCGATCCTG
65 GGCCGGAGAGGCAGAATGCACAAGCCGGGGATCG-GCCGATCCCCCCTACATGCTATCGATCCCG
* * * *
21400961 CTGCCACAACACTCGGTCCGGTCTGATC
129 CTACCACAACACTCGATCCGGACTGAGC
* * * * * * *
21400989 TTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTTCGGGTGCTGAGCC
1 TTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCT
* * *
21401054 GGCCGGAGAGGCATAATGCACAAGCCGGGGATCGGTCCGATCCCCCTCTGCATGCTATCGGTCCC
65 GGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGG-CCGATCCCCC-CTACATGCTATCGATCCC
* *
21401119 GCTACCACAACCCTCGATCC-GACTGGGGC
128 GCTACCACAACACTCGATCCGGACT-GAGC
* * * *
21401148 TTAGACGTGGAATGAGCTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAACT
1 TTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCT
*
21401213 GGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGATCC
65 GGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGC-CGATCC
21401256 GCCTGCATGC
Statistics
Matches: 222, Mismatches: 39, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
157 1 0.00
158 97 0.44
159 123 0.55
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (156 bp):
TTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTG
GCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCGATCCCCCCTACATGCTATCGATCCCGCT
ACCACAACACTCGATCCGGACTGAGC
Found at i:21401345 original size:26 final size:26
Alignment explanation
Indices: 21401303--21401355 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21401293 TCGGTCCGAT
*
21401303 CTTAGACTAGGAGTGAACTCTGTATG
1 CTTAGACTAGGAGTGAACTCCGTATG
*
21401329 CTTAGACT-GGGGATGAACTCCGTATG
1 CTTAGACTAGGAG-TGAACTCCGTATG
21401355 C
1 C
21401356 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAGTGAACTCCGTATG
Found at i:21401981 original size:26 final size:26
Alignment explanation
Indices: 21401939--21401991 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21401929 GGCTCAAAAT
*
21401939 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21401965 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21401991 C
1 C
21401992 ATAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21402514 original size:26 final size:26
Alignment explanation
Indices: 21402478--21402530 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21402468 CTGATCTGAT
21402478 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21402504 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21402530 C
1 C
21402531 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21402625 original size:355 final size:354
Alignment explanation
Indices: 21401964--21402730 Score: 1035
Period size: 355 Copynumber: 2.2 Consensus size: 354
21401954 AACTCCGTAT
* * *
21401964 GCTTAGACATGGAATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGCT-CAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG-TGCGGGCGCTCA
* * * *
21402028 GCCGGTCAGAGAGGCAAAATGTGCAACTGGGGATCTGCCCGATCCCGCCTTACTACTGTCGATCC
65 GCCGGTCAGAGAGGCAAAATGCGCAACTGAGGATCGGCCCGATCCCGCCCTACTACTGTCGATCC
* * * ***
21402093 TACTGCTGCAACGTGCAGTCCGGTTCGATTGTAGACTAAGAATGAACTTTGTATGCTTAGACTGG
130 TACTGCCGCAACCTGCAGTCCGATTCGATTGTAGACTAAGAATGAACTCCATATGCTTAGACTGG
* * * **
21402158 GGATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGTGCTCAGCCGGTCGGAGA
195 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGAGCTCAGCCGACCGGAGA
* * *
21402223 GGCATAATGCACAAGCTGGGAATCAGCCCGATCCCCCTCTACATGCTGCCGATCCCGCTGCCGGT
260 GGCATAATGCACAAGCAGGGAATCAGCCCGATCCCCCTCTACATGCTGCCGATCCCACTACCGGT
*
21402288 CCTGCTGCCACAACCCTCGGTCCGACCGGG
325 CCTGCTACCACAACCCTCGGTCCGACCGGG
*
21402318 GTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
21402383 GCCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCC-CCCTACGTGCTGTCGAT
65 GCCGGTCAGAGAGGCAAAATGCGCAACT-GAGGATCGGCCCGATCCCGCCCTAC-TACTGTCGAT
* * * **
21402447 CCTGCTGCCGTAAGCCT-CAGTCTGA-TCTGATCT-TAGACTGGGAATGAACTCCATATGCTTAG
128 CCTACTGCCGCAA-CCTGCAGTCCGATTC-GAT-TGTAGACTAAGAATGAACTCCATATGCTTAG
* *
21402509 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC-AAACGAGCGTGCCGGAGCTCAGTCGACC
190 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGAGCTCAGCCGACC
* * * *
21402573 GGAGAGGCATAATGCGCAAGCCAGGG-ATCAGCTCGATCCCCTTCTGCATGCTGCCGATCCCACT
255 GGAGAGGCATAATGCACAAG-CAGGGAATCAGCCCGATCCCCCTCTACATGCTGCCGATCCCACT
* *
21402637 ACCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGG
319 ACCGGTCCTGCTACCACAACCCTCGGTCCGACCGGG
*
21402673 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG
21402731 TGTCACGGGC
Statistics
Matches: 362, Mismatches: 43, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
354 55 0.15
355 198 0.55
356 106 0.29
357 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (354 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCAGAGAGGCAAAATGCGCAACTGAGGATCGGCCCGATCCCGCCCTACTACTGTCGATCCT
ACTGCCGCAACCTGCAGTCCGATTCGATTGTAGACTAAGAATGAACTCCATATGCTTAGACTGGG
GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGAGCTCAGCCGACCGGAGAG
GCATAATGCACAAGCAGGGAATCAGCCCGATCCCCCTCTACATGCTGCCGATCCCACTACCGGTC
CTGCTACCACAACCCTCGGTCCGACCGGG
Found at i:21408566 original size:26 final size:26
Alignment explanation
Indices: 21408514--21408566 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21408504 CCGATTCGAT
** *
21408514 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
21408540 CTTAGACTAGGG-ATGAACTCCGCATG
1 CTTAGACT-GGGAATGAACTCCGCATG
21408566 C
1 C
21408567 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:21409096 original size:160 final size:159
Alignment explanation
Indices: 21408846--21409292 Score: 542
Period size: 158 Copynumber: 2.8 Consensus size: 159
21408836 CTGGTCTGAT
* * * * ** * *
21408846 CTTAGAC-TGGAATGAACTCCGTATGCATAAGTCAACGCACGAAACAAGTGTGC-AGGCGCTGAG
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGA-GCGCTCAG
* * * * * * *
21408909 CCAGTCGAAGAGGCATAATGTGCAAGCCGAGGGATCGGCCCAGTCCCTCTCTGCGTGCTGTCGGT
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGGATCGGCCCAGTCCCTC-CTGCATGCTGTCGAT
*
21408974 CCCGCTACCACAACCCTCGGTCCGACTGGGG
129 CCCACTACCACAACCCTCGGTCCGACTGGGG
*
21409005 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGAGCGCTCAGC
* * * * * *
21409070 CGGCCGGAGTGGCAGAATGCGCAAGCCG-GGGATCGACCCGGTCCCCCCTGCATGTTATCGATCC
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGGATCGGCCCAGTCCCTCCTGCATGCTGTCGATCC
* * * *
21409134 TACTGCCACAACCCTCGGTCTGGCTGGGG
131 CACTACCACAACCCTCGGTCCGACTGGGG
* * *
21409163 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTAGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTG-CGAGCGCTCAG
** *
21409228 TTGGCCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGGCCCAGTCCCTCCTGCATGCTGTTGATC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGGATCGGCCCAGTCCCTCCTGCATGCTGTCGATC
21409292 C
130 C
21409293 TACTGCCGTA
Statistics
Matches: 244, Mismatches: 40, Indels: 8
0.84 0.14 0.03
Matches are distributed among these distances:
158 88 0.36
159 87 0.36
160 68 0.28
161 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.18
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGAGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGGATCGGCCCAGTCCCTCCTGCATGCTGTCGATCC
CACTACCACAACCCTCGGTCCGACTGGGG
Found at i:21409170 original size:158 final size:158
Alignment explanation
Indices: 21408805--21409299 Score: 546
Period size: 159 Copynumber: 3.1 Consensus size: 158
21408795 ATCGATCCTG
* ** ** *
21408805 GCTATCGATCCTGCTGCCGGAACCCTCGGTCCTGGTCT-GATCTTAGAC-TGGAATGAACTCCGT
1 GCTATCGATCCTACTGCCACAACCCTCGGT-CTGG-CTGGGGCTTAGACATGGAATGAACTCCCT
* * * ** * * * * * * *
21408868 ATGCATAAGTCAACGCACGAAACAAGTGTGC-AGGCGCTGAGCCAGTCGAAGAGGCATAATGTGC
64 ATGCCTAAGCCAACCCACGAAACGGGCGTGCGA-GCGCTCAGCCGGCCGGAGAGGCAGAATGCGC
* *
21408932 AAGCCGAGGGATCGGCCCAGTCCCTCTCTGCGT
128 AAGCCG-GGGATCGGCCCAGTCCC-CCCTGCAT
* * ** * * *
21408965 GCTGTCGGTCCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTATCGATCCTACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
* *
21409030 GCCTAAGCCAACCCACGAAACGGGCATGCGAGCGCTCAGCCGGCCGGAGTGGCAGAATGCGCAAG
66 GCCTAAGCCAACCCACGAAACGGGCGTGCGAGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAG
* *
21409095 CCGGGGATCGACCCGGTCCCCCCTGCAT
131 CCGGGGATCGGCCCAGTCCCCCCTGCAT
*
21409123 GTTATCGATCCTACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTATCGATCCTACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
* * * **
21409188 GCCTAAGCCAACCCATGAAACGGGCGTGTAGGGCGCTCAGTTGGCCGGAGAGGCAGAATGCGCAA
66 GCCTAAGCCAACCCACGAAACGGGCGTG-CGAGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAA
* *
21409253 GCCGAGGATCGGCCCAGTCCCTCCTGCAT
130 GCCGGGGATCGGCCCAGTCCCCCCTGCAT
* *
21409282 GCTGTTGATCCTACTGCC
1 GCTATCGATCCTACTGCC
21409300 GTAACCTTTG
Statistics
Matches: 280, Mismatches: 51, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
158 91 0.32
159 96 0.34
160 92 0.33
161 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTATCGATCCTACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
GCCTAAGCCAACCCACGAAACGGGCGTGCGAGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAG
CCGGGGATCGGCCCAGTCCCCCCTGCAT
Found at i:21409733 original size:26 final size:26
Alignment explanation
Indices: 21409704--21409756 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21409694 CCGGTCTGAT
21409704 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
21409730 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21409756 C
1 C
21409757 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21410075 original size:159 final size:157
Alignment explanation
Indices: 21409729--21410230 Score: 566
Period size: 159 Copynumber: 3.2 Consensus size: 157
21409719 AACTCCGTAT
21409729 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGG-GCTC
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGGCGCT-
* * * * * *
21409792 AGTCGACCGGAGAGGCAGAATGTGCAAGCTGAGGATCGACTCGATCCCCC-CTGCGTGCTGTCGA
64 AGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGC-CGATCCCCCTCTGCGTGCTGCCGA
* * * *
21409856 TCCCGCTACCGTAACTCTCAGTCCGATCCGA
128 TCCCGCTACCGCAACCCTCGGTCCGAT-CGG
* * *
21409887 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGGCACTGA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGGCGCT-A
* * *
21409952 GCCGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCGATCCCCCTCTGCATGCTGCCGGTC
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCGATCCCCCTCTGCGTGCTGCCGATC
* * * *
21410017 CCACTGCCACAACCCTCGGTCCGACTGGG
130 CCGCTACCGCAACCCTCGGTCCGA-TCGG
* * * * *
21410046 GCTTAGACAT-GGAATGAACTCCCTGTGCCTAAGCCAACCCATGAAACGAGCGTAC-GGGCGCTC
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGGCGCTA
* * * * * *
21410109 GCCGGTCGGAGAGGCAGAATGCACAAGCCGAAGATTGGCCTGGT-CCCCTCTGCGTGCTGCCAAT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCC-GATCCCCCTCTGCGTGCTGCCGAT
* *
21410173 CCTGCTACCGCAACCCTCGGTCCGGTTCGG
129 CCCGCTACCGCAACCCTCGGTCC-GATCGG
* *
21410203 TCTTAGACTGGGAATGAACTCTGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
21410231 TTAGACTGGG
Statistics
Matches: 288, Mismatches: 48, Indels: 17
0.82 0.14 0.05
Matches are distributed among these distances:
156 1 0.00
157 97 0.34
158 73 0.25
159 115 0.40
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGGCGCTAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCGATCCCCCTCTGCGTGCTGCCGATCC
CGCTACCGCAACCCTCGGTCCGATCGG
Found at i:21410240 original size:26 final size:26
Alignment explanation
Indices: 21410204--21410256 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21410194 CCGGTTCGGT
*
21410204 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21410230 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21410256 C
1 C
21410257 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21417215 original size:159 final size:158
Alignment explanation
Indices: 21416871--21417332 Score: 439
Period size: 159 Copynumber: 2.9 Consensus size: 158
21416861 AACTCCATTT
* * * * *
21416871 GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAG
* * ** *
21416936 CCGGTCGAAAAGGTAGAATGCACAAGTTGGGGATCGGCCCGATCCCTCCTACGTGCTGTCGATCC
66 CCGGCCGAAAAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
* * * *
21417001 TGCTGTCGCAACCCTCAGTCCGATCTGA
131 TACTGCCACAACCCTCAGTCCGATCGGA
* * * * * * *
21417029 TCTTAGACT-GGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGATCATGCAGGCGCTGA
1 GCTTAGA-TATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCA
* * * * * *
21417093 GCTGGCCGAAGAGGCATAATGCGCAAGCCGGGGATTGGCCCGATCCCCCTCTGCGTGCTGTC-AG
65 GCCGGCCGAAAAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCC-CTACGTGCTGTCGA-
* * *
21417157 TCCTACTGCCACAACCCTCGGTCTGGAT-GGG
128 TCCTACTGCCACAACCCTCAGTC-CGATCGGA
* * * **
21417188 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAG
* * * ** ** * *
21417253 TCGGCC-AGAAAGGCAAAATGCGCAAGTTGGGGATCGGATCGGTCCCCCCTACGTGCT-CCGATC
66 CCGGCCGA-AAAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATC
*
21417316 CTACTGCCGCAACCCTC
130 CTACTGCCACAACCCTC
21417333 GATCCGGTCC
Statistics
Matches: 242, Mismatches: 55, Indels: 15
0.78 0.18 0.05
Matches are distributed among these distances:
157 19 0.08
158 102 0.42
159 118 0.49
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAG
CCGGCCGAAAAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
TACTGCCACAACCCTCAGTCCGATCGGA
Found at i:21418891 original size:170 final size:170
Alignment explanation
Indices: 21418586--21418897 Score: 360
Period size: 170 Copynumber: 1.8 Consensus size: 170
21418576 GGTTGAGCTT
* * ** * * * *
21418586 TGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAAGTGCTCAGCAGGCGGAGAGGCATAATGTG
1 TGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCACTCAGCAGCCAGAGAGGCAAAATGCG
* * * *
21418651 CAAGTCGAGGATCAGCCAGATCCCTATCTACGTGCTGCCGATCTCGCTGCCGGTCCTGTTGGCAC
66 CAAGCCGAGGATCAGCCAGATCCCCATCTACGTGCTGCCGATCTCGCTGCCGGTCATGCTGGCAC
21418716 AACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTC
131 AACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTC
*
21418756 TGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGACACTCAGCCAGCCAGAGAGGCAAAATG
1 TGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAAG-CACTCAG-CAGCCAGAGAGGCAAAATG
* * * * * * * * *
21418820 CGTAAGCCGGGGATTAGCCTGGTCCCCCT-TACGTGCTGTCGATC-CTGCTGCTGGTCATGCTGT
64 CGCAAGCCGAGGATCAGCCAGATCCCCATCTACGTGCTGCCGATCTC-GCTGCCGGTCATGCTGG
* *
21418883 CGCAACCCTCGGTCC
128 CACAACCCTCAGTCC
21418898 AGTCTAATCT
Statistics
Matches: 115, Mismatches: 24, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
169 2 0.02
170 77 0.67
171 36 0.31
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (170 bp):
TGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCACTCAGCAGCCAGAGAGGCAAAATGCG
CAAGCCGAGGATCAGCCAGATCCCCATCTACGTGCTGCCGATCTCGCTGCCGGTCATGCTGGCAC
AACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTC
Found at i:21418944 original size:26 final size:26
Alignment explanation
Indices: 21418906--21418955 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
21418896 CCAGTCTAAT
21418906 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
21418932 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
21418956 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:21419459 original size:26 final size:26
Alignment explanation
Indices: 21419408--21419460 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21419398 CTGGTCCAAC
*
21419408 CTTAGACTCGGAATGAACTTCATATG
1 CTTAGACTCGGAATGAACTCCATATG
* * *
21419434 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCATATG
21419460 C
1 C
21419461 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCATATG
Found at i:21420158 original size:26 final size:26
Alignment explanation
Indices: 21420120--21420172 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21420110 GGCTCAAAAT
21420120 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21420146 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21420172 C
1 C
21420173 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21420489 original size:159 final size:157
Alignment explanation
Indices: 21420145--21420645 Score: 510
Period size: 158 Copynumber: 3.2 Consensus size: 157
21420135 AACTCCGTAT
*
21420145 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCCCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * * * * * ** *
21420210 CCGATTGGAGAGACAGAATGTGCAAGCTGGGGATCGACCTAGTCC-CCCCTATGTGTTGTCAATT
66 ACGACCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCCTAGTCCTCCTCT-TGTGCTG-CCGTC
*
21420274 CTGCTGCCACAACCTTCGGTCCGGTCCGA
129 CTGCTGCCACAACCCTCGGTCCGGTCCGA
* * * * * *
21420303 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
21420367 GACGACCGGAAAGGCATAATGCGCAAGCCAGGGATCGGCCTGGTCCTCCTCTTCGTGCTGCCTGT
65 GACGACCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCCTAGTCCTCCTCTT-GTGCTGCC-GT
** *
21420432 CCTGCTGCCACAACCCTCGGTCCGGTTGGG
128 CCTGCTGCCACAACCCTCGGTCCGGTCCGA
* * *
21420462 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA-CCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
21420526 TCGGCCGGAGAGGCAGAATTCGCAGGCTAGGGATTGGCCCAGTCCCTCCT-GTGTGCTGCCGATC
66 ACGACCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCCTAGT-CCTCCTCTTGTGCTGCCG-TC
* * *
21420590 CTGCTGTCGCAACCCTC-GTCCAGTCCGA
129 CTGCTGCCACAACCCTCGGTCCGGTCCGA
* *
21420618 TCTTAGACGA-GGAATGAACTCTGTATGC
1 GCTTAGAC-ATGGAATGAACTCCGTATGC
21420646 TTAGACTGGG
Statistics
Matches: 279, Mismatches: 56, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
156 31 0.11
157 27 0.10
158 148 0.53
159 72 0.26
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
ACGACCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCCTAGTCCTCCTCTTGTGCTGCCGTCCT
GCTGCCACAACCCTCGGTCCGGTCCGA
Found at i:21421389 original size:26 final size:26
Alignment explanation
Indices: 21421351--21421401 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21421341 GCTCAAAAAT
*
21421351 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21421377 CTTAGAC-ATGGAATGAACTCCGTAT
1 CTTAGACTA-GGAATGAACTCCGTAT
21421402 AACTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21421888 original size:26 final size:26
Alignment explanation
Indices: 21421853--21421903 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
21421843 CGGTCTGATC
* *
21421853 TTAGATTGGGAATGAACTTTGTATGA
1 TTAGACTGGGAATGAACTCTGTATGA
*
21421879 TTAGACTGGGGATGAACTCTGTATG
1 TTAGACTGGGAATGAACTCTGTATG
21421904 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.08, G:0.29, T:0.35
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGA
Found at i:21422235 original size:26 final size:26
Alignment explanation
Indices: 21422206--21422257 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21422196 CGGTCTGATT
*
21422206 TTAGAC-TGGGAATGAACTCTGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
21422232 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
21422258 CTAATCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Done.