Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 205 of 402
Found at i:21422360 original size:353 final size:339
Alignment explanation
Indices: 21421540--21422360 Score: 864
Period size: 353 Copynumber: 2.4 Consensus size: 339
21421530 CTGATCTTAC
* * * * * *
21421540 ACTGGGAATGAACTCCGTATGCATAAATCAACCCACGAAATGAGTGTGCGGGTGCTGAGTCGGCC
1 ACTGGGAATGAACTCCGTATGCCT-AATCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCA
* * * * * *
21421605 GAAGAGGCATAATGCGTAAGGCGGGGATCGACCTGGTCCCCCTCTGCGTGCTGTCGGTCCCATTG
65 G-AGAGG-ATAATGCGTAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGTCGATCCTACTA
21421670 CCACAACCCTCGATCCGACTGGGGCTTAGACATGAAATGAACTCCATATGCCTAAGCCAACCCAC
128 CCACAACCCTCGATCCGACTGGGGCTTAGACATGAAATGAACTCCATATGCCTAAGCCAACCCAC
* * ** * * * * * * * *
21421735 GAAATGGGCATGCGGGTGCTCCGTCGGCCGGAGAGGCAGAATGTGTAACCTGGGGATCGGCCCGG
193 AAAACGGGCA-GCGGGCACTCAGTCCGCCCGAGAGGCAAAATGCGCAACCTGGGGATCGACCCGA
* *
21421800 TCCCCCCTGTGTGCTACTTATCCTGTTGTCACAACCCTCGATCCGGTCTGATCTTAGATTGGGAA
257 TCCCCCCTGTGTGCTACTTATCCTGCTGTCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAA
*
21421865 TGAACTTTGTATGATTAG
322 TGAACTCTGTATGATTAG
* * * * *
21421883 ACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGTGCTCAACCGGCC
1 ACTGGGAATGAACTCCGTATGCCTAA-TCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGG-C
* * * * *
21421948 GGAGAGGATAATGCGTAAGTCGAGGATC-AGCCAGGTCCCCCTCTGTGTGCTGCCGATCCTACTA
64 AGAGAGGATAATGCGTAAGCCGGGGATCGA-CCAGGTCCCCCTCTGCGTGCTGTCGATCCTACTA
* * * *
21422012 CCACAACCCTC-AGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
128 CCACAACCCTCGA-TCCGACTGGGGCTTAGACATGAAATGAACTCCATATGCCTAAGCCAACCCA
21422076 CAAAACGAGCGCA-CGGGCACTCAG-CCGCCCGAGAGGCAAAATGCGCAAGCC-GGGGATCGACC
192 CAAAACG-G-GCAGCGGGCACTCAGTCCGCCCGAGAGGCAAAATGCGCAA-CCTGGGGATCGACC
* * * *
21422138 CGATCCCCCCTACGTGCTATCGATCCTGCTGCTGGTCCTGCTGTCGCAACCCTCGGTCCGGTCTG
254 CGATCCCCCCT--GTG---T-G---CTACT--T-ATCCTGCTGTCACAACCCTCGATCCGGTCTG
* *
21422203 ATTTTAGACTGGGAATGAACTCTGTATGCTTAG
307 ATCTTAGACTGGGAATGAACTCTGTATGATTAG
*
21422236 ACAT-GGAATGAACTCCGTATGCCTAATCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGC
1 AC-TGGGAATGAACTCCGTATGCCTAAT-CAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGC
* ** * * *
21422300 TAGAGAGGTAGAATAAGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTATCGATCCT
64 -AGAGAGG-ATAATGCGTAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGTCGATCCT
21422361 GCAATCGTAA
Statistics
Matches: 392, Mismatches: 62, Indels: 38
0.80 0.13 0.08
Matches are distributed among these distances:
341 41 0.10
342 121 0.31
343 59 0.15
344 5 0.01
346 1 0.00
347 1 0.00
350 4 0.01
352 3 0.01
353 130 0.33
354 26 0.07
355 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (339 bp):
ACTGGGAATGAACTCCGTATGCCTAATCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCAG
AGAGGATAATGCGTAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGTCGATCCTACTACCA
CAACCCTCGATCCGACTGGGGCTTAGACATGAAATGAACTCCATATGCCTAAGCCAACCCACAAA
ACGGGCAGCGGGCACTCAGTCCGCCCGAGAGGCAAAATGCGCAACCTGGGGATCGACCCGATCCC
CCCTGTGTGCTACTTATCCTGCTGTCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAA
CTCTGTATGATTAG
Found at i:21422552 original size:512 final size:500
Alignment explanation
Indices: 21421879--21422808 Score: 1211
Period size: 512 Copynumber: 1.8 Consensus size: 500
21421869 CTTTGTATGA
* * *
21421879 TTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGTGCTCAACC
1 TTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAACC
** * * * * *
21421944 GGCCGGAGAGGATAATGCGTAAGTCGAGGATCAGCCAGGTCCCCCTCTGTGTGCTGCCGATCCTA
66 AACCGAAGAGGATAATGCGCAAGTCGAGGATCAGCCAGATCCCCCTCAGTGTGCTGCCGATCCCA
*
21422009 CTACCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
131 CTACCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
21422074 CACAAAACGAGCGCACGGGCACTCAGCCG-CCCGAGAGGCAAAATGCGCAAGCCGGGGATCGACC
196 CACAAAACGAGCGCACGGGCACTCAGCCGACCCGAGAGGCAAAATGCGCAAGCCGGGGATCGACC
* * * * * *
21422138 CGATCCCCCCTACGTGCTATCGATCCTGCTGCTGGTCCTGCTGTCGCAACCCTCGGTCCGGTCTG
261 CGAT-CCCCCT---TGC-AT-G---CTG-T-C-GATCCTACAGTCGCAACCCTCGATCCGGCCCG
* ** *
21422203 ATTTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAA-TCCA
314 ATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGGAATGAACTCCATATGCCTAAGT-CA
* * * * *
21422266 ACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCTAGAGAGGTAGAATAAGCAAGCCGGGGATCG
377 ACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGGTAGAATAAGCAAGCCGGGGATCG
21422331 ACCCGGTCCCCCCTGCGTGCTATCGATCCTGCAATCGTAACCCTCAGTACAGTCTAATC
442 ACCCGGTCCCCCCTGCGTGCTATCGATCCTGCAATCGTAACCCTCAGTACAGTCTAATC
* * * * *
21422390 TTAGACTGGGAATGAACT-TCGTATGCATAGGTCAACCCACGAAACGAGCGTGCAGGCGTTGAGC
1 TTAGACTGGGAATGAACTCT-GTATGCATAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAAC
* * *
21422454 CAACCGAAGAGGCATAATGCGCAAGTCGAGGATCAGCCCGATCCCCCTCAGTGTGCTGCTGGTCC
65 CAACCGAAGAGG-ATAATGCGCAAGTCGAGGATCAGCCAGATCCCCCTCAGTGTGCTGCCGATCC
** *
21422519 CGTTGCCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
129 CACTACCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
** * *** * * * * * * *
21422584 CCCATGAAACGGGCGTGTGGGCGCTCAGTCGATCGGGGAGGCAGAATGCGTAAGCCGGGGATCGA
194 CCCACAAAACGAGCGCACGGGCACTCAGCCGACCCGAGAGGCAAAATGCGCAAGCCGGGGATCGA
* *
21422649 CCCGGTCCCCCTTGCATGCTGTCGATCCTACAGTCGCAACCCTCGATCTGGCCCGATCTTAGACT
259 CCCGATCCCCCTTGCATGCTGTCGATCCTACAGTCGCAACCCTCGATCCGGCCCGATCTTAGACT
*
21422714 GGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACG
324 GGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACG
21422779 AGCGTGCGGGCGCTCAACCGACCAGAGAGG
389 AGCGTGCGGGCGCTCAACCGACCAGAGAGG
21422809 CAGGACGCGC
Statistics
Matches: 361, Mismatches: 53, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
500 1 0.00
501 116 0.32
502 2 0.01
503 1 0.00
504 3 0.01
507 1 0.00
508 2 0.01
509 3 0.01
510 1 0.00
511 63 0.17
512 135 0.37
513 33 0.09
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (500 bp):
TTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAACC
AACCGAAGAGGATAATGCGCAAGTCGAGGATCAGCCAGATCCCCCTCAGTGTGCTGCCGATCCCA
CTACCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACAAAACGAGCGCACGGGCACTCAGCCGACCCGAGAGGCAAAATGCGCAAGCCGGGGATCGACC
CGATCCCCCTTGCATGCTGTCGATCCTACAGTCGCAACCCTCGATCCGGCCCGATCTTAGACTGG
GAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAG
CGTGCGGGCGCTCAACCGACCAGAGAGGTAGAATAAGCAAGCCGGGGATCGACCCGGTCCCCCCT
GCGTGCTATCGATCCTGCAATCGTAACCCTCAGTACAGTCTAATC
Found at i:21422742 original size:26 final size:26
Alignment explanation
Indices: 21422706--21422758 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21422696 CTGGCCCGAT
21422706 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21422732 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21422758 C
1 C
21422759 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21423463 original size:26 final size:26
Alignment explanation
Indices: 21423425--21423477 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21423415 GGCTCAAAAT
21423425 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21423451 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
21423477 C
1 C
21423478 CTATGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21424289 original size:351 final size:350
Alignment explanation
Indices: 21423738--21424413 Score: 815
Period size: 351 Copynumber: 1.9 Consensus size: 350
21423728 GGCTGCCGAT
* *
21423738 CCCACTGCCACAACCCTTGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATCCCTAAGCC
1 CCCACTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATCCCTAAGCC
*** ** *
21423803 AACCCACGAAATGGGCGTGCAGGCGCTCAGTCGGCCAGAAAGGCAGAATGCGCAGCCGGGGATCG
66 AACCCACGAAACCAGCGTG-AGGCGCTCAACCGACCAGAAAGGCAGAATGCGCAGCCGGGGATCG
* * * *
21423868 GCCCGATCCCCCCTGCATGCTGTCAATCCTGCTATCGTAACCCTCGATCCGGTCTGATTTAGATT
130 GCCCGATCCCCCCTACATGCTGTCAATCCTGCTATCGCAACCCTCGATCCGGTCTCATTTAGACT
* * * * *
21423933 GGGAATGAGCTCCGTATGCTTATA-TTGGGGATGAACTCTGTATACCTAA-CTCAACCCATGAAA
195 GGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATACCTAAGC-CAACCCATGAAA
* * * * * *
21423996 TGAGCGTGCTG-GCGTTCAG-TCGGCCCGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATC
258 CGAGCGTGC-GAGCGCTCAGCT-GACCCGAGAGGCAAAATGCACAAGCCGAGGATCAGCCCGATC
21424059 CCTCTCTGCGTGCTGTCAATCCCGTTGCCG
321 CCTCTCTGCGTGCTGTCAATCCCGTTGCCG
* ** * **
21424089 CCCACTGCCATAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGGCTAAGCC
1 CCCACTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATCCCTAAGCC
* * * * * * * *
21424154 AACCCATGAAACCAGCGTG-GGTGCTCAACCGATCGGAGAGGCAGGATGTGCAAGCTGGGGATCG
66 AACCCACGAAACCAGCGTGAGGCGCTCAACCGACCAGAAAGGCAGAATGCGC-AGCCGGGGATCG
* * * * *
21424218 GCTCGGTCCCCCCTACGTGCTGTCGATCCTGCTA-CTGCAACCCTCGATTCGGTCTCATCTTAGA
130 GCCCGATCCCCCCTACATGCTGTCAATCCTGCTATC-GCAACCCTCGATCCGGTCTCAT-TTAGA
*
21424282 CTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
193 CTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAA
* * * *
21424347 CGAGCGTGCGAGTGCTCAGCTGACCGGAGAGGCAAAATGCACAAGTCGAGGATCGGCCCGATCCC
258 CGAGCGTGCGAGCGCTCAGCTGACCCGAGAGGCAAAATGCACAAGCCGAGGATCAGCCCGATCCC
21424412 TC
323 TC
21424414 ACGTCTGCTG
Statistics
Matches: 271, Mismatches: 47, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
349 24 0.09
350 60 0.22
351 184 0.68
352 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (350 bp):
CCCACTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATCCCTAAGCC
AACCCACGAAACCAGCGTGAGGCGCTCAACCGACCAGAAAGGCAGAATGCGCAGCCGGGGATCGG
CCCGATCCCCCCTACATGCTGTCAATCCTGCTATCGCAACCCTCGATCCGGTCTCATTTAGACTG
GGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGA
GCGTGCGAGCGCTCAGCTGACCCGAGAGGCAAAATGCACAAGCCGAGGATCAGCCCGATCCCTCT
CTGCGTGCTGTCAATCCCGTTGCCG
Found at i:21424314 original size:26 final size:26
Alignment explanation
Indices: 21424276--21424328 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21424266 TCGGTCTCAT
21424276 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21424302 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21424328 C
1 C
21424329 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21424462 original size:182 final size:182
Alignment explanation
Indices: 21424119--21424484 Score: 517
Period size: 182 Copynumber: 2.0 Consensus size: 182
21424109 TCTGGCTGGG
*
21424119 GCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCATGAAACCAGCGTGGGTGCTCAACC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACCAGCGTGGGTGCTCAACC
* ** ** * * *
21424184 GATCGGAGAGGCAGGATGTGCAAGCTGGGGATCGGCTCGGTCCCCCCTACGTGCTGTCGATCCTG
66 GACCGGAGAGGCAAAATGCACAAGCTGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTG
*
21424249 CTACTGCAACCCTCGATTCGGTCTCATCTTAGACTGGGAATGAACTCCGTAT
131 CTACTGCAACCCTCGATTCGATCTCATCTTAGACTGGGAATGAACTCCGTAT
* *
21424301 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACCAGCGTG-G-GTGCTCAA
* *
21424366 CTGACCGGAGAGGCAAAATGCACAAG-TCGAGGATCGGCCCGAT-CCCTC-ACGTCTGCTGTCGA
64 CCGACCGGAGAGGCAAAATGCACAAGCT-GAGGATCGGCCCGATCCCCCCTACG--TGCTGTCGA
*
21424428 TCCTGCTACTGCAACCCTCG-TTC-ATCTGATCTTAGACTGGGAATGAACTCCGTAT
126 TCCTGCTACTGCAACCCTCGATTCGATCTCATCTTAGACTGGGAATGAACTCCGTAT
21424483 GC
1 GC
21424485 CTAAGTCAAC
Statistics
Matches: 164, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
182 87 0.53
183 9 0.05
184 68 0.41
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (182 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACCAGCGTGGGTGCTCAACC
GACCGGAGAGGCAAAATGCACAAGCTGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTG
CTACTGCAACCCTCGATTCGATCTCATCTTAGACTGGGAATGAACTCCGTAT
Found at i:21424803 original size:26 final size:26
Alignment explanation
Indices: 21424774--21424826 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21424764 CCGGTTTGAT
*
21424774 CTTAGACTGGGA-ATGAACTCCGTATG
1 CTTAGA-TGGGAGATGAACTCCATATG
*
21424800 CTTAGATTGGAGATGAACTCCATATG
1 CTTAGATGGGAGATGAACTCCATATG
21424826 C
1 C
21424827 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGATGGGAGATGAACTCCATATG
Found at i:21425533 original size:26 final size:26
Alignment explanation
Indices: 21425495--21425547 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21425485 GGCTCAAACT
21425495 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21425521 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21425547 C
1 C
21425548 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21426363 original size:26 final size:26
Alignment explanation
Indices: 21426334--21426386 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21426324 CCAATCCGAT
21426334 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGACTAGGG-ATGAACTCCATATG
*
21426360 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCATATG
21426386 C
1 C
21426387 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:21428104 original size:58 final size:58
Alignment explanation
Indices: 21428040--21428315 Score: 396
Period size: 58 Copynumber: 4.8 Consensus size: 58
21428030 TCTTGTGTAG
*
21428040 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATTATTTTTTTGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAACTATTTTTTTGAAATTTATTTTTAA
*
21428098 GGAAAATTGATACTTTCAACTTTTCCCTAAAAA-TATTTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAACTATTTTTTT-GAAATTTATTTTTAA
* ** *
21428156 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTGAAAATTTAGTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAACTATTTTTTTG-AAATTTATTTTTAA
* ** *
21428215 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTTAAATTTATTTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAACTATTTTTTTGAAATTTA-TTTTTAA
* *
21428274 GGAAAATTGATACTTT-AACTTTTCCCTAAAAA-TTTTTTTTTG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAACTATTTTTTTG
21428316 TTGGAAATTT
Statistics
Matches: 201, Mismatches: 13, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
57 16 0.08
58 100 0.50
59 85 0.42
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAACTATTTTTTTGAAATTTATTTTTAA
Found at i:21428313 original size:117 final size:116
Alignment explanation
Indices: 21428040--21428315 Score: 400
Period size: 117 Copynumber: 2.4 Consensus size: 116
21428030 TCTTGTGTAG
* *
21428040 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATTATTTTTTTGAAATTTATTTTTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATTATTTTTTTGAAATTTAGTTTTAAGGAAAAT
*
21428105 TGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTATTTTTAA
66 TGATACTTTCAACTTTTCCCTAAAAACATTTTTTTGGAAATTTATTTTTAA
***
21428156 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAACCCTTTTTTTGAAAATTTAGTTTTAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAATTATTTTTTTG-AAATTTAGTTTTAAGGAAA
* *
21428220 ATTGATACTTTCAACTTTT-CCTCAAAAACCCTTTTTTT-TAAATTTATTTTTTAA
64 ATTGATACTTTCAACTTTTCCCT-AAAAA-CATTTTTTTGGAAATTTA-TTTTTAA
21428274 GGAAAATTGATACTTT-AACTTTTCCCTAAAAATT-TTTTTTTG
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATTATTTTTTTG
21428316 TTGGAAATTT
Statistics
Matches: 144, Mismatches: 10, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
115 2 0.01
116 48 0.33
117 61 0.42
118 33 0.23
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (116 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATTATTTTTTTGAAATTTAGTTTTAAGGAAAAT
TGATACTTTCAACTTTTCCCTAAAAACATTTTTTTGGAAATTTATTTTTAA
Found at i:21428377 original size:17 final size:17
Alignment explanation
Indices: 21428357--21428411 Score: 76
Period size: 17 Copynumber: 3.2 Consensus size: 17
21428347 AGAATACATA
21428357 AAAAAATAAAGAAAAAT
1 AAAAAATAAAGAAAAAT
*
21428374 AAAAAATAAAGAAAAGT
1 AAAAAATAAAGAAAAAT
*
21428391 AAAACAA-AAATAAAAAT
1 AAAA-AATAAAGAAAAAT
21428408 AAAA
1 AAAA
21428412 TAAAGATAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
17 32 0.94
18 2 0.06
ACGTcount: A:0.82, C:0.02, G:0.05, T:0.11
Consensus pattern (17 bp):
AAAAAATAAAGAAAAAT
Found at i:21428388 original size:11 final size:10
Alignment explanation
Indices: 21428356--21428415 Score: 54
Period size: 11 Copynumber: 6.1 Consensus size: 10
21428346 TAGAATACAT
21428356 AAAAAAATAA
1 AAAAAAATAA
*
21428366 AGAAAAAT--
1 AAAAAAATAA
21428374 -AAAAAATAA
1 AAAAAAATAA
* *
21428383 AGAAAAGTAA
1 AAAAAAATAA
21428393 AACAAAAATAA
1 AA-AAAAATAA
21428404 AAATAAAATAA
1 AAA-AAAATAA
21428415 A
1 A
21428416 GATAAAAAGA
Statistics
Matches: 39, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
7 6 0.15
10 16 0.41
11 17 0.44
ACGTcount: A:0.82, C:0.02, G:0.05, T:0.12
Consensus pattern (10 bp):
AAAAAAATAA
Found at i:21428388 original size:27 final size:27
Alignment explanation
Indices: 21428358--21428410 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
21428348 GAATACATAA
*
21428358 AAAAAT-AAAGAAAAATAAAAAATAAAG
1 AAAAATAAAACAAAAAT-AAAAATAAAG
*
21428385 AAAAGTAAAACAAAAATAAAAATAAA
1 AAAAATAAAACAAAAATAAAAATAAA
21428411 ATAAAGATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 14 0.61
28 9 0.39
ACGTcount: A:0.81, C:0.02, G:0.06, T:0.11
Consensus pattern (27 bp):
AAAAATAAAACAAAAATAAAAATAAAG
Found at i:21428420 original size:17 final size:16
Alignment explanation
Indices: 21428359--21428423 Score: 60
Period size: 17 Copynumber: 3.9 Consensus size: 16
21428349 AATACATAAA
*
21428359 AAAATAAAGAAAAATAA
1 AAAATAAAGAAAAA-AT
*
21428376 AAAATAAAG-AAAAGT
1 AAAATAAAGAAAAAAT
* *
21428391 AAAACAAAAATAAAAAT
1 AAAATAAAGA-AAAAAT
21428408 AAAATAAAGATAAAAA
1 AAAATAAAGA-AAAAA
21428424 GAATATTAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
15 7 0.18
16 4 0.10
17 28 0.72
ACGTcount: A:0.80, C:0.02, G:0.06, T:0.12
Consensus pattern (16 bp):
AAAATAAAGAAAAAAT
Found at i:21430873 original size:26 final size:26
Alignment explanation
Indices: 21430837--21430889 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21430827 GTTGGCATAG
*
21430837 GCATCCAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
21430863 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21430889 G
1 G
21430890 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21431215 original size:26 final size:26
Alignment explanation
Indices: 21431179--21431230 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21431169 GTTGGCTTAG
*
21431179 GCATCCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21431205 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21431231 TAGTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21431927 original size:26 final size:26
Alignment explanation
Indices: 21431891--21431969 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
21431881 GTTGACTTAG
21431891 GCATATGGAGTTCATACCCAGTCTAA
1 GCATATGGAGTTCATACCCAGTCTAA
*
21431917 GCATATGGAGTTCATACCTAGTCTAA
1 GCATATGGAGTTCATACCCAGTCTAA
* *
21431943 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATACCCAGTCTAA
21431969 G
1 G
21431970 ATTGGATCGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATACCCAGTCTAA
Found at i:21433012 original size:26 final size:26
Alignment explanation
Indices: 21432982--21433034 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21432972 GTTGACTTAG
* *
21432982 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAATTCATTCCC-AGTCTAA
21433008 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
21433034 G
1 G
21433035 ATCGGATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:21433511 original size:26 final size:26
Alignment explanation
Indices: 21433481--21433536 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
21433471 TGGGTTGGCT
21433481 TAAGCATACGGAGTTCATTC-CATGTC
1 TAAGCATACGGAGTTCATTCACA-GTC
*
21433507 TAAGCATATGGAGTTCATTCACAGTC
1 TAAGCATACGGAGTTCATTCACAGTC
21433533 TAAG
1 TAAG
21433537 ATCAAACCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 26 0.93
27 2 0.07
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCACAGTC
Found at i:21433723 original size:26 final size:26
Alignment explanation
Indices: 21433693--21433745 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21433683 GTTGACTTAG
21433693 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21433719 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21433745 G
1 G
21433746 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21435093 original size:159 final size:157
Alignment explanation
Indices: 21434793--21435311 Score: 528
Period size: 159 Copynumber: 3.3 Consensus size: 157
21434783 AAGCATACAA
* ** * * * ** *
21434793 AGTTCATTCCTAGTCTAAGGTCAGACCGGACCAAGGGTTACGGCAGCAGGATCGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTGCGATAGCAGGATCGACAACACGCAG
* * * * * * * *
21434858 GAGGGATCGGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCC
66 GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCT-AACACCCGAACGCT
* *
21434923 CGTTTCATGGGTTGGCTTAGGCATAGGG
130 CGTTTCGTGGGTTGGCTTAGGCATACGG
* * * * * * *
21434951 AGTTCATT-CCATGTCTAAGCCCCAG-CCTGACTGAGGGTTGTGGCT-GCGGGA-CTGGCAACAC
1 AGTTCATTCCCA-GTCTAAG-ACCAGACCAGACCGAGGGTTG-CGATAGCAGGATC-GACAACAC
* * *
21435012 GCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTCAACGCCCGA
62 GCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCT-AACACCCGA
* *
21435077 ACGCTCATTTCGTGGGTTGACTTAGGCATACGG
125 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * *
21435110 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATCGACAGCACGTAG
1 AGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTGCGATAGCAGGATCGACAACACGCAG
**** *
21435175 GGAGGGACCAAATCGATCCCCGGCTTGCGCATTCTGCCTCTCC-AGTCGGCTAAGCACCCGTACG
66 GG-GGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-TCGGCTAA-CACCCGAACG
21435239 CTCGTATT-GTGGGTTGGCTTAGGCATACGG
128 CTCGT-TTCGTGGGTTGGCTTAGGCATACGG
* *
21435269 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGA
1 AGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTGCGA
21435312 CAGTAGTACC
Statistics
Matches: 298, Mismatches: 50, Indels: 25
0.80 0.13 0.07
Matches are distributed among these distances:
157 3 0.01
158 51 0.17
159 238 0.80
160 6 0.02
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTGCGATAGCAGGATCGACAACACGCAG
GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTAACACCCGAACGCTC
GTTTCGTGGGTTGGCTTAGGCATACGG
Found at i:21435468 original size:26 final size:26
Alignment explanation
Indices: 21435432--21435484 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21435422 GTTGGCCTAG
*
21435432 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
21435458 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
21435484 G
1 G
21435485 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:21436532 original size:26 final size:26
Alignment explanation
Indices: 21436496--21436548 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21436486 GTTGACTTAG
21436496 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21436522 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21436548 G
1 G
21436549 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21436871 original size:58 final size:58
Alignment explanation
Indices: 21436781--21436900 Score: 159
Period size: 58 Copynumber: 2.1 Consensus size: 58
21436771 CTCGGCTTGT
** * *
21436781 GCATTATGCCTCTCCGACCGGCTCAGTGCCCGCACGCTCGTTTTGTGTGTTGACTTAG
1 GCATTATGCCTCTCCGACCGGCTCAACGCCCGCACGCTCGTTTCGTGAGTTGACTTAG
* * * * *
21436839 GCATTCTGCCTCTCCGACTGGCTGAACGCCCGCATGCTCGTTTCGTGAGTTGGCTTAG
1 GCATTATGCCTCTCCGACCGGCTCAACGCCCGCACGCTCGTTTCGTGAGTTGACTTAG
21436897 GCAT
1 GCAT
21436901 ACGGAGTTCA
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.12, C:0.31, G:0.27, T:0.30
Consensus pattern (58 bp):
GCATTATGCCTCTCCGACCGGCTCAACGCCCGCACGCTCGTTTCGTGAGTTGACTTAG
Found at i:21436926 original size:26 final size:26
Alignment explanation
Indices: 21436897--21436948 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21436887 GTTGGCTTAG
*
21436897 GCATACGGAGTTCATTCCATA-TCTAA
1 GCATACAGAGTTCATTCC-TAGTCTAA
*
21436923 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
21436949 AATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:21437940 original size:159 final size:158
Alignment explanation
Indices: 21437646--21438147 Score: 559
Period size: 159 Copynumber: 3.2 Consensus size: 158
21437636 CTCAGTCTAA
* * *
21437646 GCATACAGAGTTCATTTCCA-GTCTAAGATCAAACAGGACTGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCA-TTCCATGTCTAAGATCAAACCGGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
21437710 AGCACGC--AGGGGGACCGGGTCAATCCCC-AGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGC
65 AGCAAGCAGAGGGGGATCGGGTCGATCCCCGA-CTTGCGCATTCTGCCTCTCC-GGCGACTGAGC
* *
21437772 GCCCGCACGCCCGTTTCGTGGGTTGGCCTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * *
21437803 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGCGGCAGCGGGATCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAAACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
* * * *
21437868 GCAAGCAGAGGGGGATCGGGTCGATCCCCGACTTACGCATTATGCCTCTCTGGCTGACTCAGCGC
66 GCAAGCAGAGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGC-GACTGAGCGC
* *
21437933 CCGCACGCTGGTTTTGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
21437962 GCATACGGAGTTCATTCC-TAGTCTAAGATCGAATCGGACTGAAGGTTACAGCAACAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAAACCGGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
21438026 AGCACA-CAGGGGGGGATCGAGCCGATCCCCGACTTGGGCATTCTGCCTCTCCGGCCAGCTGAGC
65 AGCA-AGCAGAGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCGA-CTGAGC
*
21438090 ACCCGCACGCTCG-TTCTGTGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTC-GTGGGTTGGCTTAG
*
21438121 GCACACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
21438148 CATATGGAGT
Statistics
Matches: 287, Mismatches: 48, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
156 5 0.02
157 54 0.19
158 6 0.02
159 219 0.76
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
GCAAGCAGAGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCGACTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:21438346 original size:26 final size:26
Alignment explanation
Indices: 21438317--21438369 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21438307 GTTGACTTAG
21438317 GCATACGAAGTTCATCCCCAGCCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
* * *
21438343 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
21438369 G
1 G
21438370 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGCCTAA
Found at i:21438528 original size:197 final size:195
Alignment explanation
Indices: 21438010--21438590 Score: 763
Period size: 197 Copynumber: 3.0 Consensus size: 195
21438000 CTGAAGGTTA
* * * * * *
21438010 CAGCAACAGGATCGACAGCACACAGGGGGGGATCGAGCCGATCCCCGACTTGGGCATTCTGCCTC
1 CAGCAGCAGGATCGATAGCACACA-GGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTC
* * * * * *
21438075 TCCGGCCAGCTGAGCACCCGCACGCTCGTTCTGTGGGTTGGCTTAGGCACACGGAGTTCAT-TCC
65 TCCGACCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATAC-GAGTTCATCCCC
* * ** *
21438139 ATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAACGG
129 A-GCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGACAACGG
*
21438204 GGC
193 GAC
* * * *
21438207 CAGCAGCAGGATCGATAGCACGCAGGAGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTAT
1 CAGCAGCAGGATCGATAGCACACAGGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCT
* * * *
21438272 CC-AGTCGGCTGAGCACTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCC
66 CCGA-CCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACG-AGTTCATCCCC
*
21438336 AGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGC-AGCAACGG
129 AGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGA-CAACGG
21438400 GAC
193 GAC
* ** *
21438403 CAGCAGCAGGATCGGTAGCACACAGAGAGGGACCGGGCCGATCCTTGACTTGCGCATTCTACCTC
1 CAGCAGCAGGATCGATAGCACACAG-GAGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTC
21438468 TCCGACCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCC
65 TCCGACCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATAC-GAGTTCATCCCC
* * *
21438533 AGCCTAAGCATACGGACTTCATTCCCAGTCTAAGATTGAATCAGACCAAGGGTTGCGA
129 AGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGA
21438591 TAGCAAGATC
Statistics
Matches: 333, Mismatches: 43, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
195 2 0.01
196 162 0.49
197 166 0.50
198 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (195 bp):
CAGCAGCAGGATCGATAGCACACAGGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCT
CCGACCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAGTTCATCCCCAG
CCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGACAACGGGAC
Found at i:21438553 original size:26 final size:26
Alignment explanation
Indices: 21438514--21438566 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21438504 GTTGACTTAG
*
21438514 GCATACAGAGTTCATCCCCAGCCTAA
1 GCATACAGACTTCATCCCCAGCCTAA
* * *
21438540 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACAGACTTCATCCCCAGCCTAA
21438566 G
1 G
21438567 ATTGAATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGACTTCATCCCCAGCCTAA
Found at i:21439191 original size:26 final size:26
Alignment explanation
Indices: 21439161--21439213 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21439151 GTTGACTTAG
*
21439161 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
21439187 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21439213 G
1 G
21439214 ATCCGATAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21439537 original size:159 final size:158
Alignment explanation
Indices: 21439315--21439678 Score: 452
Period size: 158 Copynumber: 2.3 Consensus size: 158
21439305 CACACACCCA
* * *
21439315 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCGAGGGTT
* * * *
21439380 GTGGTAGCGGGA-CTGGCAGCACATAGAGGGGGACCGGGTCGATCCCCT-ACTTGCGCATTATGC
66 GTAGTAGCAGGATC-GACAGCACATAG-GGGGGACCGGGTCAAT-CCCTGACTTGCGCATTATGC
* * *
21439443 CTCTTC-GACCGGCTCAGCGCCCGTAGGCTCG
128 CTCTTCAG-CCGGCTCAGCACCCGCACGCTCG
* * * *
21439474 TTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCGGACCGAGGG
* *
21439537 TTGTAGTAGCAGGATCGACAGCACATAGGGGGGACCGGGTCAATCCCTGGCTTGCGCATTCTGCC
64 TTGTAGTAGCAGGATCGACAGCACATAGGGGGGACCGGGTCAATCCCTGACTTGCGCATTATGCC
* *
21439602 TTTTCAGCCGGCTGAGCACCCGCACGCTCG
129 TCTTCAGCCGGCTCAGCACCCGCACGCTCG
*
21439632 TTTCGTGTGTTGGCTTAGGCATAC-GATGTTCATTCCATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGGA-GTTCATTCCATGTCTAAGCA
21439679 TACGGAGTTC
Statistics
Matches: 176, Mismatches: 21, Indels: 16
0.83 0.10 0.08
Matches are distributed among these distances:
157 9 0.05
158 90 0.51
159 73 0.41
160 4 0.02
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.26
Consensus pattern (158 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCGAGGGTT
GTAGTAGCAGGATCGACAGCACATAGGGGGGACCGGGTCAATCCCTGACTTGCGCATTATGCCTC
TTCAGCCGGCTCAGCACCCGCACGCTCG
Found at i:21439654 original size:158 final size:157
Alignment explanation
Indices: 21439235--21439678 Score: 493
Period size: 159 Copynumber: 2.8 Consensus size: 157
21439225 TCGAGGGTTG
** * ** *** *
21439235 CGACAGCACGCAGGGGGGACCGGGTCGATCCTTGGCTCACGCATTCTGCCTCCCCGACCTGCTGA
1 CGACAGCACATAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTTTTCGACCGGCTGA
* * * * * *
21439300 GCGCCCACACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
66 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCA
* * *
21439365 GCCGGATCGAGGGTTGTGGTAGCGGGA
131 GCCGGACCGAGGGTTGTAGTAGCAGGA
* * * *
21439392 CTGGCAGCACATAGAGGGGGACCGGGTCGATCCCCT-ACTTGCGCATTATGCCTCTTCGACCGGC
1 C-GACAGCACATAG-GGGGGACCGGGTCGAT-CCCTGGCTTGCGCATTCTGCCTTTTCGACCGGC
* * * * *
21439456 TCAGCGCCCGTAGGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-
63 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGC
* *
21439519 ATCAGATCGGACCGAGGGTTGTAGTAGCAGGA
127 ACCAG-CCGGACCGAGGGTTGTAGTAGCAGGA
*
21439551 TCGACAGCACATAGGGGGGACCGGGTCAATCCCTGGCTTGCGCATTCTGCCTTTTC-AGCCGGCT
1 -CGACAGCACATAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTTTTCGA-CCGGCT
* *
21439615 GAGCACCCGCACGCTCGTTTCGTGTGTTGGCTTAGGCATAC-GATGTTCATTCCATGTCTAAGCA
64 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA-GTTCATTCCATGTCTAAGCA
21439679 TACGGAGTTC
Statistics
Matches: 237, Mismatches: 39, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
157 11 0.05
158 99 0.42
159 120 0.51
160 7 0.03
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (157 bp):
CGACAGCACATAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTTTTCGACCGGCTGA
GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCA
GCCGGACCGAGGGTTGTAGTAGCAGGA
Found at i:21439688 original size:26 final size:26
Alignment explanation
Indices: 21439650--21439702 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
21439640 GTTGGCTTAG
21439650 GCATACGATGTTCATT-CCATGTCTAA
1 GCATACGATGTTCATTCCCA-GTCTAA
21439676 GCATACGGA-GTTCATTCCCAGTCTAA
1 GCATAC-GATGTTCATTCCCAGTCTAA
21439702 G
1 G
21439703 TTTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGATGTTCATTCCCAGTCTAA
Found at i:21440404 original size:26 final size:26
Alignment explanation
Indices: 21440374--21440426 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21440364 GTTGACTTAG
21440374 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21440400 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21440426 G
1 G
21440427 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21440762 original size:159 final size:158
Alignment explanation
Indices: 21440400--21440797 Score: 392
Period size: 159 Copynumber: 2.5 Consensus size: 158
21440390 CCCAGTCTAA
* * * *
21440400 GCATACGGAGTTCATTCCTAGTCTAAGATTAGACCGGACCGAGGGTTGCGACAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGACCGGTA
* ** * * * * *
21440465 GCACGCAGGGGGGATCAAGCCGATCCTTGGCTTGTGCATTCTGCCTCGCTGGCTGGCTGAGCACC
66 GCACGCAGGGGGGACCAAGCCGATCCCCGGCTTGCGCATTATGCCTCGCCGGCCGGCTCAGCACC
* * *
21440530 CGCACATCTATTTTGTGGGTTGGCTTAG
131 CACACATCTATTTTGTGGGTCGACTTAG
* *** * * * * *
21440558 GCATAGGGAGTTCATT-CCATGTCTAACCCCCA-ACCGGATCAAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAA-GATCAGACCGGACCGAGGGTTGCGACAGCAGGACCGG
* *
21440621 TAGCACGTAGAGGGGGACCGAA-CCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAG
64 TAGCACGCAG-GGGGGACC-AAGCCGATCCCCGGCTTGCGCATTATGCCTCGCCGGCCGGCTCAG
21440685 CACCCACACA-CT-TGTTTCGTGGGTCGACTTAG
127 CACCCACACATCTAT-TTT-GTGGGTCGACTTAG
* * * * * * **
21440717 GCATACGGAGTTCATTCCCACTCTAAGATCAGACCAGACCGAGGGTTACGGCAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGACCGGTA
*
21440782 GCACGTAGGGGGGACC
66 GCACGCAGGGGGGACC
21440798 CGATAGGTCC
Statistics
Matches: 191, Mismatches: 41, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.02
158 69 0.36
159 114 0.60
160 5 0.03
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGACCGGTA
GCACGCAGGGGGGACCAAGCCGATCCCCGGCTTGCGCATTATGCCTCGCCGGCCGGCTCAGCACC
CACACATCTATTTTGTGGGTCGACTTAG
Found at i:21441747 original size:158 final size:157
Alignment explanation
Indices: 21441307--21441768 Score: 446
Period size: 158 Copynumber: 2.9 Consensus size: 157
21441297 AAACCGGACT
* * *
21441307 GAGGGTTGCGATAGCAGGATCGGCAGCACGCAGGAGGGACCGGGCCGATCCCCGGCTTGCGCATT
1 GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGGAGGGATCGGGCC-ATCCCCGGCTTGAGCATT
* * * * *
21441372 CTGCCTCTCCCGTTGGTTGAGTGCCCGTACGGC-CGTTTCATGGGTTGGCTTAGGCAAAGGGAGT
65 CTGCCTCTCCCGTCGGCTGAGTGCCCGCAC-GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
* * *
21441436 TCATTCCATGTCTAAGCCCCAGCTGGACC
129 TCATTCCATGTCTAAGCACCAGATAGACC
* * * * * * *
21441465 GAGGGTTGTGGCAGCGGGATCGGCACCACGCAGAGAGGGATCGGGTCAATCCTCGACTT-ATGCA
1 GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAG-GAGGGATCGGG-CCATCCCCGGCTTGA-GCA
* * * * * * *** * * * *
21441529 TTATGCCTTTTCGGTCGACTCAACACCCGCACGCTCATTTCCTGGGTTGACTTATGCATACGGAG
63 TTCTGCCTCTCCCGTCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* * *
21441594 TTCATTCCCTGTGTAAG-ATCAGATCAGACC
128 TTCATTCCATGTCTAAGCACCAGAT-AGACC
* * * * *
21441624 GAGGGTTGCGGTAGTAGGATCGACAGCATGTAGGGGGGATCGGGCCATTCCCCGGCTTGAGCATT
1 GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGGAGGGATCGGGCCA-TCCCCGGCTTGAGCATT
* * *
21441689 CTGCGTCTCCTGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
65 CTGCCTCTCCCGTCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
21441754 CATTCC-TAGTCTAAG
130 CATTCCAT-GTCTAAG
21441769 ATTTTGAGCC
Statistics
Matches: 235, Mismatches: 61, Indels: 16
0.75 0.20 0.05
Matches are distributed among these distances:
157 3 0.01
158 120 0.51
159 111 0.47
160 1 0.00
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (157 bp):
GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGGAGGGATCGGGCCATCCCCGGCTTGAGCATTC
TGCCTCTCCCGTCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCACCAGATAGACC
Found at i:21442706 original size:184 final size:183
Alignment explanation
Indices: 21442379--21443040 Score: 686
Period size: 195 Copynumber: 3.5 Consensus size: 183
21442369 CTACCCATTC
* * * * * ** *
21442379 GATCCCCGGCTTGCGCCTCCTACCTCTTCGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGCCCGTTTCGTGGGTT
* * *
21442444 GACTTAGGCATACAGAGTTCA-TCCCTAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCA
66 GACTTAGGCATACAGAGTTCATTCCAT-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * *
21442508 GACCGGATCGAGGGTTGTTGCAGCAGGATCGACAGCACACAGGGTGGATCGGGCT
130 GATCAGACCGAGGGTTGTTGCAGTAGGATCGACAGCACGCAGGG-GGACCGGGCT
* * * *
21442563 GATCCCCAGCTTACGCATTCTGCCTCTCTGGCCGGTTGAGCGCCCACACGCCCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGCCCGTTTCGTGGGTT
* ** *
21442628 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCCAAGATC-G
66 GACTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* *
21442692 AATCAGACCGAGGGTTGCAACAGTAGGACTAGCAGTAGGATTGGCAGCACGCAGGGGGACCGGG-
131 -ATCAGACCGAGGGTT------GT-----T-GCAGTAGGATCGACAGCACGCAGGGGGACCGGGC
21442756 T
183 T
* * *
21442757 GAATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCACCCACACGCTCGTTTCGTGGGT
1 G-ATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGCCCGTTTCGTGGGT
* *
21442822 TGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
65 TGACTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
** * * *
21442886 AGATCAGACCGAGGGTT-ACGACAGTAGGATCGACAGCACGTAGGGGGACCGAGCC
129 AGATCAGACCGAGGGTTGTTG-CAGTAGGATCGACAGCACGCAGGGGGACCGGGCT
* * * * * * * *
21442941 GATCCTCGGCTTGCGCAATCTACCTCTCCAGTCGGCTGAGTGCCCACATGCCCGTTTCATGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGCCCGTTTCGTGGGTT
* ** *
21443006 GGCTTAGGCATAGGGGGTTCATTCCATGTCTAAGC
66 GACTTAGGCATACAGAGTTCATTCCATGTCTAAGC
21443041 CCCAGCCGGA
Statistics
Matches: 395, Mismatches: 63, Indels: 41
0.79 0.13 0.08
Matches are distributed among these distances:
182 4 0.01
183 108 0.27
184 117 0.30
185 4 0.01
190 2 0.01
194 2 0.01
195 133 0.34
196 25 0.06
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (183 bp):
GATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGCCCGTTTCGTGGGTT
GACTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ATCAGACCGAGGGTTGTTGCAGTAGGATCGACAGCACGCAGGGGGACCGGGCT
Found at i:21442866 original size:26 final size:26
Alignment explanation
Indices: 21442830--21442882 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21442820 GTTGACTTAG
21442830 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
21442856 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21442882 G
1 G
21442883 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21443156 original size:159 final size:159
Alignment explanation
Indices: 21442892--21443373 Score: 436
Period size: 159 Copynumber: 3.0 Consensus size: 159
21442882 GATCAGATCA
* * * * * *
21442892 GACCGAGGGTTACGACAGTAGGATCGACAG--CAC-GTAGGGGGACCGAGCCGATCCTCGGCTTG
1 GACCGAGGGTTGCGGCAGCAGGACCGACAGCACACAG-AGGGGGACAGAGCCGATCCTCAGCTTG
* * * * * * * * ** * * *
21442954 CGCAATCTACCTCTCCAGTCGGCTGAGTGCCCACATGCCCGTTTCATGGGTTGGCTTAGGCATAG
65 TGCATTATACCTCTTCAGCCAGCTCAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAC
*
21443019 GGGGTTCATTCCATGTCTAAGCCCCAGCCG
130 GGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * **
21443049 GACTGAGGGTTGTGGCAGCAGGACCGACAGCATGCAGAGGGGGACTAG-GCCGATCCTC-GACTT
1 GACCGAGGGTTGCGGCAGCAGGACCGACAGCACACAGAGGGGGAC-AGAGCCGATCCTCAG-CTT
* * *** * ** * *
21443112 GTGCATTATGCCTCTTCGGTTGGCTCAGTGCCCGTACGCTCGTTTTGTGGGTTGACTTATGCATA
64 GTGCATTATACCTCTTCAGCCAGCTCAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATA
** * * *
21443177 CGGAGTTCATTCCCA-GTCTAAGATCGAACCA
129 CGGAGTTCATT-CCATGTCTAAGCCCCAGCCG
* * * * *
21443208 GACCGAGGGTTGCGGTAGCAGGATCGACAGCACACAGGGGGGGACCGAGCCGATGCTCAGCTTGT
1 GACCGAGGGTTGCGGCAGCAGGACCGACAGCACACAGAGGGGGACAGAGCCGATCCTCAGCTTGT
* * * * *
21443273 GCATTCTACCTTTTCAGCCAGCTGAGCGCCCGTACGCTCGTTTCATTGGTTGGCTTAGGCATACA
66 GCATTATACCTCTTCAGCCAGCTCAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACG
*
21443338 AAGTTCATTCCATGTCTAAGCCCCAGCCG
131 GAGTTCATTCCATGTCTAAGCCCCAGCCG
21443367 GACCGAG
1 GACCGAG
21443374 TCGATCCTCG
Statistics
Matches: 254, Mismatches: 62, Indels: 16
0.77 0.19 0.05
Matches are distributed among these distances:
157 24 0.09
158 5 0.02
159 219 0.86
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GACCGAGGGTTGCGGCAGCAGGACCGACAGCACACAGAGGGGGACAGAGCCGATCCTCAGCTTGT
GCATTATACCTCTTCAGCCAGCTCAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAGCCG
Found at i:21443618 original size:273 final size:275
Alignment explanation
Indices: 21443099--21443631 Score: 689
Period size: 273 Copynumber: 1.9 Consensus size: 275
21443089 GGGACTAGGC
** * * * * *
21443099 CGATCCTCGACTTGTGCATTATGCCTCTTCGGTTGGCTCAGTGCCCGTACGCTCGTTTTGTGGGT
1 CGATCCTCGACTTACGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTCGATTTGTGGGT
* *
21443164 TGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCAG
66 TGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAG
* * * *
21443229 GATCGACAGCACACAGGGGGGGACCGAGCCGATGCTCAGCTTGTGCATTCTACCTTTTCAGCCAG
131 GATCGACAGCACACA-GGGGGGACCGAGCCGATCCCCAGCTTGAGCATTCTACCTTCTCAGCCAG
* *
21443294 CTGAGCGCCCGTACGCTCGTTTCATTGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGC
195 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGC
21443359 CCCAGCCGGACCGAGT
260 CCCAGCCGGACCGAGT
*
21443375 CGATCCTCGGCTTACGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTC-ATTTGCTGGG
1 CGATCCTCGACTTACGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTCGATTTG-TGGG
* * * * *
21443439 TTGACTTATGCATAC-GAGTTCATTCCCAGTGTAAGATC-AGATCAGACTGAGTGTTATGGCAGC
65 TTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTACGGCAGC
* *** * * * *
21443502 AGGATCGATAGCATGTA-GGGGGACCGGGCCGATCCCCAGCTTGAGCATTCT-GCGTCTCTAGTC
129 AGGATCGACAGCACACAGGGGGGACCGAGCCGATCCCCAGCTTGAGCATTCTACCTTCTC-AGCC
* * * **
21443565 GGCTGAGTGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
193 AGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAA
21443630 GC
258 GC
21443632 ATAAGGAGTT
Statistics
Matches: 220, Mismatches: 34, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
272 4 0.02
273 93 0.42
274 1 0.00
275 56 0.25
276 66 0.30
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.27
Consensus pattern (275 bp):
CGATCCTCGACTTACGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTCGATTTGTGGGT
TGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAG
GATCGACAGCACACAGGGGGGACCGAGCCGATCCCCAGCTTGAGCATTCTACCTTCTCAGCCAGC
TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCC
CCAGCCGGACCGAGT
Found at i:21443634 original size:26 final size:26
Alignment explanation
Indices: 21443604--21443656 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21443594 GTTGGCTTAG
*
21443604 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
21443630 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
21443656 G
1 G
21443657 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:21444363 original size:26 final size:26
Alignment explanation
Indices: 21444327--21444376 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
21444317 GTTGACTTAG
*
21444327 GCATACGGAGTTCATCCCCAGTCTCA
1 GCATACAGAGTTCATCCCCAGTCTCA
* *
21444353 GCATACAGAGTTCATTCCTAGTCT
1 GCATACAGAGTTCATCCCCAGTCT
21444377 AAGATCAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTCA
Found at i:21445146 original size:171 final size:171
Alignment explanation
Indices: 21444908--21445268 Score: 490
Period size: 171 Copynumber: 2.1 Consensus size: 171
21444898 GTTACGATAA
** * * * *
21444908 CAGGACCAACAGCAGGATCGACAACACGCAAGGGGGGACCAAGCCGATCCCTGGCTTGCGCATTC
1 CAGGACCGGCAGCGGGATCGACAACACGCAACGGGGGACCAAGCCGATCCCCGGCTTGCACATTC
* * *
21444973 TGCCTCTCCGATCGACTGAGCGCCTA-CACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTT
66 TGCCTCTCCGATCAACTGAGCG-CTAGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTT
* * *
21445037 CATTCCATGTCTAAGCCCTAGTCAGACTGATGGTTGTGGTAG
130 CATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAG
* * ** *
21445079 CAGGACTGGCAGCGGGATCGACAGCACGCAACGGGGGTTCGAGCCGATCCCCGGCTTGCACATTC
1 CAGGACCGGCAGCGGGATCGACAACACGCAACGGGGGACCAAGCCGATCCCCGGCTTGCACATTC
* * * * * *
21445144 TGCCTCTCCGGTCAATTGAGTGCTAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGAAGTTC
66 TGCCTCTCCGATCAACTGAGCGCTAGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTC
*
21445209 ATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAG
131 ATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAG
21445250 CAGGACCGGCAGCGGGATC
1 CAGGACCGGCAGCGGGATC
21445269 AGTAGCGCAC
Statistics
Matches: 164, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
170 3 0.02
171 161 0.98
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (171 bp):
CAGGACCGGCAGCGGGATCGACAACACGCAACGGGGGACCAAGCCGATCCCCGGCTTGCACATTC
TGCCTCTCCGATCAACTGAGCGCTAGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTC
ATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAG
Found at i:21445322 original size:171 final size:171
Alignment explanation
Indices: 21444908--21445323 Score: 446
Period size: 171 Copynumber: 2.4 Consensus size: 171
21444898 GTTACGATAA
** * * * * * * * * * *
21444908 CAGGACCAACAGCAGGATCGACAACACGCAAGGGGGGACCAAGCCGATCCCTGGCTTGCGCATTC
1 CAGGACCGGCAGCGGGATCGACAGCACACAACGGGGGATCGAGCCGATCCCCGACTTGCACATAC
* * * * * ** *
21444973 TGCCTCTCCGATCGACTGAGCGCCTA-CACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTT
66 TGCCTCTCCGGTCAATTGAGTG-CTAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTT
* * *
21445037 CATTCCATGTCTAAGCCCTAGTCAGACTGATGGTTGTGGTAG
130 CATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAG
* * * * *
21445079 CAGGACTGGCAGCGGGATCGACAGCACGCAACGGGGGTTCGAGCCGATCCCCGGCTTGCACATTC
1 CAGGACCGGCAGCGGGATCGACAGCACACAACGGGGGATCGAGCCGATCCCCGACTTGCACATAC
*
21445144 TGCCTCTCCGGTCAATTGAGTGCTAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGAAGTTC
66 TGCCTCTCCGGTCAATTGAGTGCTAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTC
*
21445209 ATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAG
131 ATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAG
* * **
21445250 CAGGACCGGCAGCGGGATC-AGTAGCGCACAGA-GGGGGATCGAGTTGATCCCCGACTTTCGCA-
1 CAGGACCGGCAGCGGGATCGA-CAGCACACA-ACGGGGGATCGAGCCGATCCCCGAC-TT-GCAC
21445312 ATAC-GCCTCTCC
62 ATACTGCCTCTCC
21445324 AGCCAGCTGA
Statistics
Matches: 207, Mismatches: 33, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
170 4 0.02
171 194 0.94
172 6 0.03
173 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (171 bp):
CAGGACCGGCAGCGGGATCGACAGCACACAACGGGGGATCGAGCCGATCCCCGACTTGCACATAC
TGCCTCTCCGGTCAATTGAGTGCTAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTC
ATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAG
Found at i:21445351 original size:171 final size:171
Alignment explanation
Indices: 21444908--21445373 Score: 413
Period size: 171 Copynumber: 2.7 Consensus size: 171
21444898 GTTACGATAA
** * * * * * * * * * *
21444908 CAGGACCAACAGCAGGATCGACAACACGCAAGGGGGGACCAAGCCGATCCCTGGCTTGCGCATTC
1 CAGGACCGGCAGCGGGATCGACAGCACACAACGGGGGATCGAGCCGATCCCCGACTTGCACATAC
* * * * * ** *
21444973 TGCCTCTCC-GATCGACTGAGCGCCTA-CACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGT
66 TGCCTCTCCAG-CCAACTGAGCACC-AGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGT
* * *
21445036 TCATTCCATGTCTAAGCCCTAGTCAGACTGATGGTTGTGGTAG
129 TCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAG
* * * * *
21445079 CAGGACTGGCAGCGGGATCGACAGCACGCAACGGGGGTTCGAGCCGATCCCCGGCTTGCACATTC
1 CAGGACCGGCAGCGGGATCGACAGCACACAACGGGGGATCGAGCCGATCCCCGACTTGCACATAC
* * * ** * * *
21445144 TGCCTCTCCGGTCAATTGAGTGCTAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGAAGTTC
66 TGCCTCTCCAGCCAACTGAGCACCAGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTC
*
21445209 ATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAG
131 ATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAG
* * **
21445250 CAGGACCGGCAGCGGGATC-AGTAGCGCACAGA-GGGGGATCGAGTTGATCCCCGACTTTCGCA-
1 CAGGACCGGCAGCGGGATCGA-CAGCACACA-ACGGGGGATCGAGCCGATCCCCGAC-TT-GCAC
* * * * * *
21445312 ATAC-GCCTCTCCAGCCAGCTGAGCACCCGTACACTCGTTTCGTTGGTTGACTCAGGCATACG
62 ATACTGCCTCTCCAGCCAACTGAGCACCAGCACACTCGTTTCGTGGGTTGGCTTAGGCATACG
21445374 GAGCTCATCC
Statistics
Matches: 242, Mismatches: 47, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
170 2 0.01
171 230 0.95
172 7 0.03
173 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (171 bp):
CAGGACCGGCAGCGGGATCGACAGCACACAACGGGGGATCGAGCCGATCCCCGACTTGCACATAC
TGCCTCTCCAGCCAACTGAGCACCAGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTC
ATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAG
Found at i:21445407 original size:26 final size:26
Alignment explanation
Indices: 21445367--21445419 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21445357 GTTGACTCAG
21445367 GCATACGGAGCTCATCCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
* * *
21445393 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
21445419 G
1 G
21445420 ATCAGATTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAGTCTAA
Found at i:21445600 original size:26 final size:26
Alignment explanation
Indices: 21445550--21445602 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21445540 GTTGGCTTAG
*
21445550 GCATACGGAGTCCATTCCATGTCTAA
1 GCATACGGAGTCCATTCCATATCTAA
*
21445576 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTCCATT-CCATATCTAA
21445602 G
1 G
21445603 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCATATCTAA
Found at i:21446676 original size:159 final size:158
Alignment explanation
Indices: 21446306--21446676 Score: 374
Period size: 159 Copynumber: 2.3 Consensus size: 158
21446296 TAAGCATATG
* * * * * * *
21446306 GAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGTAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTACGGCAGCAGGACCGACAGCACACA
* *
21446371 AGGGGGATCGGGTCGATCCTCAGCTCGCGCATTCTGCCTCTCCGACCGGCTAAGCGCCCGCAAGC
66 AGGGGGACCGGGTCGATCCTCAGCTCGCGCATTATGCCTCTCCGACCGGCTAAGCGCCCGCAAGC
**
21446436 CCATTTCATGGGTTGGCTTAGGCATAGG
131 CCATTTCATGGGTTGGCTTAGGCATACA
* ** * ** * * *
21446464 GAGTTC-TTTCCATGTCTAAGCCCTAG-TCAGA-TCGAGGGTTGTGGTAGCGGGACCTG-TAGCA
1 GAGTTCATTCCCA-GTCTAAG-ATTAGACCAGACT-GAGGGTTACGGCAGCAGGACC-GACAGCA
* * * * * *
21446525 CACAGAGGGGGACCGGGTCGATCC-CTTGCTTGCGGATTATGCCTCTCCGGCCGGTTGAGCGCCC
62 CACA-AGGGGGACCGGGTCGATCCTC-AGCTCGCGCATTATGCCTCTCCGACCGGCTAAGCGCCC
* *
21446589 GCACGCTCATTTCATGGGTTGGCTTAGGCATACA
125 GCAAGCCCATTTCATGGGTTGGCTTAGGCATACA
* * *
21446623 GAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTCCGGCAACAGGACC
1 GAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTACGGCAGCAGGACC
21446677 AGCAGCAGGA
Statistics
Matches: 166, Mismatches: 38, Indels: 17
0.75 0.17 0.08
Matches are distributed among these distances:
157 4 0.02
158 41 0.25
159 115 0.69
160 6 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTACGGCAGCAGGACCGACAGCACACA
AGGGGGACCGGGTCGATCCTCAGCTCGCGCATTATGCCTCTCCGACCGGCTAAGCGCCCGCAAGC
CCATTTCATGGGTTGGCTTAGGCATACA
Found at i:21446816 original size:26 final size:26
Alignment explanation
Indices: 21446786--21446838 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21446776 GTTGGCTTAG
21446786 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
21446812 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21446838 G
1 G
21446839 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21446987 original size:196 final size:193
Alignment explanation
Indices: 21446616--21447401 Score: 749
Period size: 196 Copynumber: 4.0 Consensus size: 193
21446606 GTTGGCTTAG
* * * * * * *
21446616 GCATACAGAGTTCATTCCCAGTCTAAGATTGGAC-CAGACTGAGGGTTCCGGCAACAGGACCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCGACTGA-ACCGAGGGTTGCGACAGCAGGACCAGC
* * * * * * ** * **
21446680 AGCAGGATCGACAGCACGCAAAGGGGATCGGGCCGGTCCTCGGA-TTGCACATTCTGCCTCTTTG
64 AGCAGGATCGACAGCACGC-AGGGGGA-CCGGTCGATCC-CCGACTTACGTATTCTACCTCTCCG
* * * * * *
21446744 GCCGGTTGAGTGC-CCGTATGCTTGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGT
126 GTCGGCTGAG-CCACCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGT
21446808 CTAA
190 CTAA
* * *
21446812 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTCCGACAGCAGGACCAGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACTGAACCGAGGGTTGCGACAGCAGGACCAGCA
* ** *
21446877 ACAGGATCGACAGCACGCAGGGGGTACCAGGTCGATCCTTGACTTACGTGTTCTACCTCTCCGGT
65 GCAGGATCGACAGCACGCAGGGGG-ACC-GGTCGATCCCCGACTTACGTATTCTACCTCTCCGGT
* * * *
21446942 CGGCTGAGCCACCGCACGCTCGTTTCGTGGGTTTGCTTGGGCATACGGAGTTCATTCCATGTCTA
128 CGGCTGAGCCACCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
21447007 A
193 A
* * * *
21447008 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATTAGACCGAGGGTTGC-AGCAGTAGGACCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGACTGA-ACCGAGGGTTGCGA-CAGCAGGACCAGC
* * * ** * *
21447072 AGTAGGATCGATAGCACGTAAGGCAGACCGGGTCGGTCCCCGACTTACGCATTCTACCTCTCCGG
64 AGCAGGATCGACAGCACG-CAGGGGGACC-GGTCGATCCCCGACTTACGTATTCTACCTCTCCGG
* * * * * *
21447137 CCGACCGAG-CACCCGCACGCTCGTTTCGTGGGTTGGCTTGGGCATACGGAGTTCATTCCATGTC
127 TCGGCTGAGCCA-CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTC
21447201 TAA
191 TAA
* * * ** *
21447204 GCATACGAATTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCAGGACTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACTGAACCGAGGGTTGCGACAGCAGGACCAGCA
* * * * * * *
21447269 GCAGGATTGACAGCACGCAGGGGGGATCGGGCTGATCCCCGGCTTGCGTATTCTGCCTCTCCGAT
65 GCAGGATCGACAGCACGCA-GGGGGACCGGTC-GATCCCCGACTTACGTATTCTACCTCTCCGGT
* *
21447334 CGGCTGAGCGC-CCGTACGTTCGTTTCATGGGTTGGCTTAGGCATAC-AGAGTTCATTCCATGTC
128 CGGCTGAGC-CACCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGA-AGTTCATTCCATGTC
21447397 TAA
191 TAA
21447400 GC
1 GC
21447402 CCCAGTCGGA
Statistics
Matches: 487, Mismatches: 86, Indels: 34
0.80 0.14 0.06
Matches are distributed among these distances:
195 20 0.04
196 458 0.94
197 8 0.02
198 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (193 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACTGAACCGAGGGTTGCGACAGCAGGACCAGCAG
CAGGATCGACAGCACGCAGGGGGACCGGTCGATCCCCGACTTACGTATTCTACCTCTCCGGTCGG
CTGAGCCACCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
Found at i:21447018 original size:26 final size:26
Alignment explanation
Indices: 21446982--21447034 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21446972 GTTTGCTTGG
*
21446982 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
21447008 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21447034 G
1 G
21447035 ATCGAATTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21447217 original size:26 final size:26
Alignment explanation
Indices: 21447178--21447230 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21447168 GTTGGCTTGG
*
21447178 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
21447204 GCATACGAATTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21447230 G
1 G
21447231 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21447340 original size:392 final size:392
Alignment explanation
Indices: 21446616--21447401 Score: 968
Period size: 392 Copynumber: 2.0 Consensus size: 392
21446606 GTTGGCTTAG
* * * *
21446616 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTCCGGCAACAGGACCAGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTCCAGCAACAGGACCAGCA
* * * * * **
21446681 GCAGGATCGACAGCACGCAAAGGGGATCGGGCCGGTCCTCGGATTGCACATTCTGCCTCTTTGGC
66 GCAGGATCGACAGCACGCAAAGGAGACCGGGCCGGTCCTCCGATTACACATTCTACCTCTCCGGC
*** ** * * *
21446746 CGGTTGAGTGCCCGTATGCTTGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
131 CGACCGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
* *
21446811 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTCCGACAGCAGGACCAGT
196 AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTCCGACAGCAGGACCAGC
* ** * *
21446876 AACAGGATCGACAGCACGCAGGGGGTACCAGGTCGATCCTTGACTTACGTGTTCTACCTCTCCGG
261 AACAGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCCCGACTTACGTATTCTACCTCTCCGA
* * * *
21446941 TCGGCTGAGC-CACCGCACGCTCGTTTCGTGGGTTTGCTTGGGCATACGGAGTTCATTCCATGTC
326 TCGGCTGAGCGC-CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
21447005 TAA
390 TAA
** * **
21447008 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATTAGACCGAGGGTTGCAGCAGTAGGACCAGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTCCAGCAACAGGACCAGCA
* * * * *
21447073 GTAGGATCGATAGCACG-TAAGGCAGACCGGGTCGGTCC-CCGACTTACGCATTCTACCTCTCCG
66 GCAGGATCGACAGCACGCAAAGG-AGACCGGGCCGGTCCTCCGA-TTACACATTCTACCTCTCCG
* * *
21447136 GCCGACCGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTGGGCATACGGAGTTCATTCCATGTC
129 GCCGACCGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTC
* * * * * ** *
21447201 TAAGCATACGAATTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCAGGACTA
194 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTCCGACAGCAGGACCA
* * * * * * *
21447266 GCAGCAGGATTGACAGCACGCAGGGGGGATC-GGGCTGATCCCCGGCTTGCGTATTCTGCCTCTC
259 GCAACAGGATCGACAGCACGCAGGGGGGACCAGGTC-GATCCCCGACTTACGTATTCTACCTCTC
* *
21447330 CGATCGGCTGAGCGCCCGTACGTTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATG
323 CGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATG
21447395 TCTAA
388 TCTAA
21447400 GC
1 GC
21447402 CCCAGTCGGA
Statistics
Matches: 330, Mismatches: 60, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
391 10 0.03
392 319 0.97
393 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (392 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTCCAGCAACAGGACCAGCA
GCAGGATCGACAGCACGCAAAGGAGACCGGGCCGGTCCTCCGATTACACATTCTACCTCTCCGGC
CGACCGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTCCGACAGCAGGACCAGC
AACAGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCCCGACTTACGTATTCTACCTCTCCGA
TCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
AA
Found at i:21448087 original size:26 final size:26
Alignment explanation
Indices: 21448058--21448110 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21448048 GTTGGCTTAG
*
21448058 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
21448084 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21448110 G
1 G
21448111 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21453548 original size:26 final size:26
Alignment explanation
Indices: 21453512--21453564 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21453502 GTTCGCTTAG
21453512 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
21453538 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21453564 G
1 G
21453565 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21454271 original size:26 final size:26
Alignment explanation
Indices: 21454234--21454286 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21454224 GTTGACTTAG
21454234 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
21454260 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21454286 G
1 G
21454287 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21454550 original size:184 final size:184
Alignment explanation
Indices: 21454161--21454629 Score: 449
Period size: 184 Copynumber: 2.5 Consensus size: 184
21454151 ACCTGCCGTT
* * **** ** * **
21454161 CGATCCCCGACTTGCGCATCCTGCCTCTCTGGTCGACTGAGCGTCCGCACGCTCGTTTTGTGGGT
1 CGATCCCCGACTTACGCATTCTGCCTCTCCAACCGACTGAGCACCCACACGCTCGTTTCATGGGT
* * ** *
21454226 TGACTTAGGCATACGAAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
66 TGGCTTAGGCATACGAAGTTCAT-TCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATC
* * * * *
21454290 AGACCAGATCGAGGGTTGCGGCAACAGGATCAACAGCAGGCAGGGGGGATCGAGC
130 AGACCAGACCGAGGGTTACCGCAACAAGATCAACAGCAGGCAGGGGGGACCGAGC
* * * * **
21454345 TGGTCCCCGGCTTATGCATTCTGCCTCTCCAACC-AGCTGAGTGCCCACACGCTCGTTTCATGGG
1 CGATCCCCGACTTACGCATTCTGCCTCTCCAACCGA-CTGAGCACCCACACGCTCGTTTCATGGG
* * * *
21454409 TTGGCTTTGGCATACGGAGTTTATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTATGATC
65 TTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATC
* ** *** *
21454474 GGACTGGACCGAGGGTTACCGCAACAAGATCGGTAGCATGCATGGGGGGACCG-GC
130 AGACCAGACCGAGGGTTACCGCAACAAGATCAACAGCAGGCA-GGGGGGACCGAGC
** * * ** * * *
21454529 CGATCCTTGACTTGCGCATTCTGCCTCTCCAGCCGACTGAGCACCCGTACACTTGTTTCATTGGT
1 CGATCCCCGACTTACGCATTCTGCCTCTCCAACCGACTGAGCACCCACACGCTCGTTTCATGGGT
**
21454594 TGGCTTAGGCATGTGAAGTTCATTCCATGTCTAAGC
66 TGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
21454630 CCCAGCTGGA
Statistics
Matches: 225, Mismatches: 56, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
183 4 0.02
184 211 0.94
185 10 0.04
ACGTcount: A:0.20, C:0.28, G:0.26, T:0.26
Consensus pattern (184 bp):
CGATCCCCGACTTACGCATTCTGCCTCTCCAACCGACTGAGCACCCACACGCTCGTTTCATGGGT
TGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCA
GACCAGACCGAGGGTTACCGCAACAAGATCAACAGCAGGCAGGGGGGACCGAGC
Found at i:21454799 original size:26 final size:26
Alignment explanation
Indices: 21454770--21454825 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
21454760 TGGGTTGACT
21454770 TAAGCATACGAAGTTCATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
* * * *
21454796 TAAGCATACGGAGTTTATTCCCAGTT
1 TAAGCATACGAAGTTCATCCCCAGTC
21454822 TAAG
1 TAAG
21454826 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGTC
Found at i:21455325 original size:26 final size:26
Alignment explanation
Indices: 21455275--21455327 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21455265 GTTGGCTTAG
* *
21455275 GCATATGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
21455301 GCATACGAAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
21455327 G
1 G
21455328 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:21455928 original size:393 final size:392
Alignment explanation
Indices: 21455180--21456087 Score: 1266
Period size: 393 Copynumber: 2.3 Consensus size: 392
21455170 CAAGATCAAC
* * * *
21455180 AGCACGTAGGGGGGGACCGGGTCAGA-CCCCGGCTTGA-GCATTCTGCCTCTCCGGTCGGCTGAG
1 AGCACGCA-GGGGGGACCGGG-CAAATCCCCGGCTT-ACGCATTCTGCCTCTTCGGTCGGTTGAG
** * * * *
21455243 CGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATATGAAGTTCATTCCATGTCTAAGCATACG
63 CGGTCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACG
* *
21455308 AAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTATGGCAGTAGGACCAGTAGCAGGAT
128 AAGTTCATTCCCAATCTAAGATCGGATCGAACCGAGGGTTATGGCAGTAGGACCAGTAGCAAGAT
* **
21455373 CGACAACACATAGGGGGATCGGGTTGATCCCCGACTTGTGCATTCTACCTCTTTGACCGGCCCCT
193 CGACAACACATAGGGGGATCGAGCCGATCCCCGACTTGTGCATTCTACCTCTTTGACCGGCCCCT
*
21455438 CCAACCGACTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
258 CCAACCGACTGAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
* * *
21455503 GTCTAAGCATACAAAATTCATTCCTAGTCTAAGATCAAATCGGACCGAAGGTTGCGGCTGCAGGA
323 GTCTAAGCATACAAAATTCATTCCTAGTCTAAGATCAAATCAGACCGAAGGTTACGGCAGCAGGA
*
21455568 TCGGT
388 TCGAT
** * *
21455573 AGCACGCAGGGGGGACCGGGCAAATCTTTC-GCTTACGTATTCTGCCTTTTTC-GTCGGTTGAGC
1 AGCACGCAGGGGGGACCGGGCAAATC-CCCGGCTTACGCATTCTGCC-TCTTCGGTCGGTTGAGC
* *
21455636 GGTCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCATACGA
64 GGTCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGA
* * *
21455701 AGTTCATTTCCAGTCTAAGATTGGATCGAACCGAGGGTTATGGCAGTAGGACCAGTAGCAAGATC
129 AGTTCATTCCCAATCTAAGATCGGATCGAACCGAGGGTTATGGCAGTAGGACCAGTAGCAAGATC
* * * * *
21455766 GACAGCACGTAGGGGGGATCGAGCCGATCCCTGACTTGTGCATTCTACCTCTTTGATCGGCCTCT
194 GACAACACATA-GGGGGATCGAGCCGATCCCCGACTTGTGCATTCTACCTCTTTGACCGGCCCCT
** * * * ** *
21455831 CTGATCGGCTGAGCGCCTGCAGGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
258 CCAACCGACTGAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
* ** *
21455896 GTCTAAGCATACAAAGTTCATTCCTAGTCTAAGATCAAATCAGATTGAGGGTTACGGCAGCAGGA
323 GTCTAAGCATACAAAATTCATTCCTAGTCTAAGATCAAATCAGACCGAAGGTTACGGCAGCAGGA
21455961 TCGAT
388 TCGAT
* * *
21455966 AGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCTGTTGAGCGG
1 AGCACGCAGGGGGGACCGGGCAAATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGGTTGAGCGG
* **
21456031 TCGCACGCCCGTTTCATGGGTTGGCTTAGGTGTAGGGAGTTCATTCCATGTCTAAGC
66 TCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
21456088 CCCAGCCAGA
Statistics
Matches: 450, Mismatches: 58, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
391 4 0.01
392 167 0.37
393 279 0.62
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (392 bp):
AGCACGCAGGGGGGACCGGGCAAATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGGTTGAGCGG
TCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGAAG
TTCATTCCCAATCTAAGATCGGATCGAACCGAGGGTTATGGCAGTAGGACCAGTAGCAAGATCGA
CAACACATAGGGGGATCGAGCCGATCCCCGACTTGTGCATTCTACCTCTTTGACCGGCCCCTCCA
ACCGACTGAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
TAAGCATACAAAATTCATTCCTAGTCTAAGATCAAATCAGACCGAAGGTTACGGCAGCAGGATCG
AT
Found at i:21456204 original size:158 final size:158
Alignment explanation
Indices: 21455942--21456245 Score: 403
Period size: 158 Copynumber: 1.9 Consensus size: 158
21455932 AAATCAGATT
* * * * *
21455942 GAGGGTTACGGCAGCAGGATCGATAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATT
1 GAGGGTTACGGCAGCAGGACCGACAGCACACAGGGGGGACCAGGCCAATCCCCGGCTTGAGCATT
* * ** * ** *
21456007 CTGCCTCTTCGGTCTGTTGAGCGGTCGCACGCCCGTTTCATGGGTTGGCTTAGGTGTAGGGAGTT
66 CTGCCTCTTCGATCAGTTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTT
21456072 CATTCCATGTCTAAGCCCCAGCCAGACC
131 CATTCCATGTCTAAGCCCCAGCCAGACC
* * * **
21456100 GAGGGTTATGGCAGCAGGACCGGCAGCACACAGAGGGGGACCAGGCCGATCCTTGGCTT-AGCAT
1 GAGGGTTACGGCAGCAGGACCGACAGCACACAG-GGGGGACCAGGCCAATCCCCGGCTTGAGCAT
* * *
21456164 TCTGCCTTTTCGATCAGTTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGT
65 TCTGCCTCTTCGATCAGTTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGT
21456229 TCATTCCATGTCTAAGC
130 TCATTCCATGTCTAAGC
21456246 ATACAGAGTT
Statistics
Matches: 124, Mismatches: 21, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
158 103 0.83
159 21 0.17
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (158 bp):
GAGGGTTACGGCAGCAGGACCGACAGCACACAGGGGGGACCAGGCCAATCCCCGGCTTGAGCATT
CTGCCTCTTCGATCAGTTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCCCCAGCCAGACC
Found at i:21456248 original size:26 final size:26
Alignment explanation
Indices: 21456218--21456270 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21456208 GTTGGCTTAG
*
21456218 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
21456244 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21456270 G
1 G
21456271 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21456971 original size:26 final size:26
Alignment explanation
Indices: 21456941--21456993 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21456931 GTTGACTTAG
*
21456941 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
21456967 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21456993 G
1 G
21456994 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21458497 original size:159 final size:158
Alignment explanation
Indices: 21458184--21458528 Score: 440
Period size: 159 Copynumber: 2.2 Consensus size: 158
21458174 CCCAGTCTAA
** * * * *
21458184 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCAGACCGAAGGTTGTGACAGCAGGATCTGT
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCAGACCGAAGGTTGTGACAGCAGGACCGGC
* ** * * *
21458248 AGCACGTAGGGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTACCTCTCCGACCGGTTGATCGC
65 AGCACGCAGGGCAGATCGAGCCAATCCTCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGC
* * *
21458313 TTGTACGCCCGTTTCATGGGTTGGCTTAG
130 ATGCACGCCCATTTCATGGGTTGGCTTAG
* * * *
21458342 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCGGGACCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAAGGTTGTGACAGCAGGACCGGCA
* * **
21458407 GCACGCAGAGGCAGATCGAGCCAATCTTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
66 GCACGCAG-GGCAGATCGAGCCAATCCTCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGC
*
21458472 ATGCACGCTCATTTCATGGGTTGGCTTAG
130 ATGCACGCCCATTTCATGGGTTGGCTTAG
*
21458501 GCATACAGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
21458529 ATACGGAGTT
Statistics
Matches: 159, Mismatches: 26, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
157 3 0.02
158 58 0.36
159 98 0.62
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAAGGTTGTGACAGCAGGACCGGCA
GCACGCAGGGCAGATCGAGCCAATCCTCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCA
TGCACGCCCATTTCATGGGTTGGCTTAG
Found at i:21458531 original size:26 final size:26
Alignment explanation
Indices: 21458501--21458553 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21458491 GTTGGCTTAG
21458501 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
21458527 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
21458553 G
1 G
21458554 AGTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:21459775 original size:26 final size:26
Alignment explanation
Indices: 21459726--21459778 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21459716 TTTGGCTTAG
*
21459726 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
21459752 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
21459778 G
1 G
21459779 ATCGCATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:21460122 original size:159 final size:158
Alignment explanation
Indices: 21459852--21460266 Score: 438
Period size: 159 Copynumber: 2.6 Consensus size: 158
21459842 GATCGGGCTA
* * * * * * *
21459852 ATCCTTGACTTACGGATTCTGCCTCTCCGGCTGGTTGAGCACCTGCATGCTCATTTCGTGGGTTG
1 ATCCTCGACTTGCGCATT-TGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTG
* * * * * ** * **
21459917 GCTTAAGCATACGGAGTTCATTTCATGTCTAAGCCCCAGCTGGATCGAGGGTTGTGGCGACGGGA
65 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCACCTCGATCGAGGGTTGCAGCAACAAGA
* * *
21459982 CCGGCAGCATGTAGAG-GGGAATCGAGCCG
130 CCGACAGCACGTAG-GCGGGAACCGAGCCG
* * *
21460011 ATCCTCGACTTGCGCATTATGCCTCTCCAGCTGGCTCAGCACCCGCACGCTTGTTTCGTGGGTTG
1 ATCCTCGACTTGCGCATT-TGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTG
* * * * * *
21460076 ACTTAGGCATACGGATTTCATTCC-TAGTCTAAGATCGACCTCGATCGAGGGTTGCAGTAATAAG
65 GCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCCACCTCGATCGAGGGTTGCAGCAACAAG
* *
21460140 ATCGACAGCACGTAGGCGGGGACCGAGCCG
129 ACCGACAGCACGTAGGCGGGAACCGAGCCG
* * * * * *
21460170 ATCCTCAACGTGCACATTTGGCCTTTCCGGCTGGCTGAGCACCCGCACGCACGTTTCGTGGGCTG
1 ATCCTCGACTTGCGCATTT-GCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTG
21460235 GCTTAGGCATACGGAGTTCATTCCATGTCTAA
65 GCTTAGGCATACGGAGTTCATTCCATGTCTAA
21460267 ACATACGGAG
Statistics
Matches: 209, Mismatches: 43, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
158 3 0.01
159 205 0.98
160 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.26
Consensus pattern (158 bp):
ATCCTCGACTTGCGCATTTGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCACCTCGATCGAGGGTTGCAGCAACAAGAC
CGACAGCACGTAGGCGGGAACCGAGCCG
Found at i:21460150 original size:514 final size:514
Alignment explanation
Indices: 21459344--21460634 Score: 1398
Period size: 514 Copynumber: 2.5 Consensus size: 514
21459334 ACCGATCCCC
* * * * * * *
21459344 GACTTATGCATTCTGCCTCTCTGACCGGTTGAGCACCCGCATGATCGTTTCATGGTTTGGCTTAG
1 GACTTACGCATTCTGCCTCTCCGGCCGGTTGAGCACCTGCATGCTCGTTTCGTGGGTTGGCTTAG
* * **
21459409 GTATAGGGAGTTCATTTCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGG-GAGCGTGG-CCTA
66 GCATACGGAGTTCATTTCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCGAGCG-GGACCGG
** * * *
21459472 CAGCACATAG-GGAGGGATCGAGCCAATCCCTGACTTGTGCATTATGCCTCTCC-GACTAGCTCA
130 CAGCATGTAGAGG-GGAATCGAGCCGATCCC-GACTTGCGCATTATGCCTCTCCAG-CTAGCTCA
** * * *
21459535 GTGCCCACCCGCTTGTTTCATGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAGATTGG
192 GCACCCACACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTCG
** * * * * **
21459600 ATCAGACCGAGGGTTGTGGCAGCAGGATCAACAGCACGCAGG-GGGGACCGGGTCGATCCCCGGC
257 ATCAGACCGAGGGTTGCAGCAACAAGATCAACAGCACGCAGGCGGGGACCGAGCCGATCCCCAAC
* * * * ** **
21459664 TTACGCATTCT-ACATCTCTGACTGGCTGAGCACCCGTACGCTTGTTTCGTGGTTTGGCTTAGGC
322 GTACACATT-TGACATCTCCGACTGGCTGAGCACCCGCACGCACGTTTCGTGGGCTGGCTTAGGC
* * * * * *
21459728 ATACGGAGTTCATTTCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGCATCGGACTG
386 ATACGGAGTTCATTCCATGTCTAAACATACGGAGTGCATTCCCAATCTAAGATCGCATCAGACCG
* * * ** *
21459793 AGGGTTGCTATAGTAGGACCAGCAGCAGGATCGGTAGCATGCAGGGGGGGATCGGGCTAATCCTT
451 AGGGTTGCGATAGCAGGACCAGCAGCAGGATCGGTAGCATGCA-GGGGGGACCGAACCAATCCTT
* * * *
21459858 GACTTACGGATTCTGCCTCTCCGGCTGGTTGAGCACCTGCATGCTCATTTCGTGGGTTGGCTTAA
1 GACTTACGCATTCTGCCTCTCCGGCCGGTTGAGCACCTGCATGCTCGTTTCGTGGGTTGGCTTAG
* *
21459923 GCATACGGAGTTCATTTCATGTCTAAGCCCCAGCTGGATCGAGGGTTGTGGCGA-CGGGACCGGC
66 GCATACGGAGTTCATTTCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCGAGCGGGACCGGC
*
21459987 AGCATGTAGAGGGGAATCGAGCCGATCCTCGACTTGCGCATTATGCCTCTCCAGCTGGCTCAGCA
131 AGCATGTAGAGGGGAATCGAGCCGATCC-CGACTTGCGCATTATGCCTCTCCAGCTAGCTCAGCA
* * * *
21460052 CCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGATTTCATTCCTAGTCTAAGA-TCGACC
195 CCCACACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTCGA--
* * * * * *
21460116 TC-GATCGAGGGTTGCAGTAATAAGATCGACAGCACGTAGGCGGGGACCGAGCCGATCCTCAACG
258 TCAGACCGAGGGTTGCAGCAACAAGATCAACAGCACGCAGGCGGGGACCGAGCCGATCCCCAACG
* * * * *
21460180 TGCACATTTGGCCTTTCCGGCTGGCTGAGCACCCGCACGCACGTTTCGTGGGCTGGCTTAGGCAT
323 TACACATTTGACATCTCCGACTGGCTGAGCACCCGCACGCACGTTTCGTGGGCTGGCTTAGGCAT
* *
21460245 ACGGAGTTCATTCCATGTCTAAACATACGGAGTGCATTCCCAATCTAAGATTGGATCAGACCGAG
388 ACGGAGTTCATTCCATGTCTAAACATACGGAGTGCATTCCCAATCTAAGATCGCATCAGACCGAG
* * * *
21460310 GGTTGCGGTAGCAGGACCAGTAGCAGGATTGGTAGCATGCAGGGGGGACCGAACCGATCCTT
453 GGTTGCGATAGCAGGACCAGCAGCAGGATCGGTAGCATGCAGGGGGGACCGAACCAATCCTT
* * * * * * * * * *
21460372 GGCTTGCGTATTCTACCTCTCCAGCCAGTTGAGC-GCTCGGACGCTCGTTTTGTGGGTTGGCTTA
1 GACTTACGCATTCTGCCTCTCCGGCCGGTTGAGCACCT-GCATGCTCGTTTCGTGGGTTGGCTTA
* * * *
21460436 GGCATGCGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGC-AGCAGGACCGG
65 GGCATACGGAGTTCATTTCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCGAGCGGGACCGG
* * * *
21460500 CAGCGGGATCGACAGCACGCAGAGGTGAATCGAGCTGATCCCCGGCTTGCACATTATGCCTCTCC
130 CAGC---AT-----GTA-G-AG-GG-GAATCGAGCCGAT-CCCGACTTGCGCATTATGCCTCTCC
* * * * *
21460565 AGCCAGTTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
182 AGCTAGCTCAGCACCCACACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
21460630 CTAAG
247 CTAAG
21460635 CATATGGACT
Statistics
Matches: 643, Mismatches: 110, Indels: 36
0.81 0.14 0.05
Matches are distributed among these distances:
513 8 0.01
514 362 0.56
515 169 0.26
517 2 0.00
522 2 0.00
523 1 0.00
524 2 0.00
525 2 0.00
526 93 0.14
527 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (514 bp):
GACTTACGCATTCTGCCTCTCCGGCCGGTTGAGCACCTGCATGCTCGTTTCGTGGGTTGGCTTAG
GCATACGGAGTTCATTTCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCGAGCGGGACCGGC
AGCATGTAGAGGGGAATCGAGCCGATCCCGACTTGCGCATTATGCCTCTCCAGCTAGCTCAGCAC
CCACACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTCGATCA
GACCGAGGGTTGCAGCAACAAGATCAACAGCACGCAGGCGGGGACCGAGCCGATCCCCAACGTAC
ACATTTGACATCTCCGACTGGCTGAGCACCCGCACGCACGTTTCGTGGGCTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAACATACGGAGTGCATTCCCAATCTAAGATCGCATCAGACCGAGGGT
TGCGATAGCAGGACCAGCAGCAGGATCGGTAGCATGCAGGGGGGACCGAACCAATCCTT
Found at i:21460291 original size:26 final size:26
Alignment explanation
Indices: 21460242--21460292 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
21460232 CTGGCTTAGG
* *
21460242 CATACGGAGTTCATTCCATGTCTAAA
1 CATACGGAGTGCATTCCATATCTAAA
21460268 CATACGGAGTGCATTCCCA-ATCTAA
1 CATACGGAGTGCATT-CCATATCTAA
21460293 GATTGGATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTGCATTCCATATCTAAA
Found at i:21460638 original size:26 final size:26
Alignment explanation
Indices: 21460608--21460660 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21460598 GTTGACTTAG
*
21460608 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
* *
21460634 GCATATGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
21460660 G
1 G
21460661 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAGTCTAA
Found at i:21460784 original size:355 final size:359
Alignment explanation
Indices: 21460205--21460858 Score: 890
Period size: 355 Copynumber: 1.8 Consensus size: 359
21460195 TCCGGCTGGC
* * * *
21460205 TGAGCACCCGCACGCACGTTTCGTGGGCTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACA
1 TGAGCACCCACACGCACGTTTCATGGGCTGACTTAGGCATACGGAGTTCATCCCATGTCTAAACA
* *
21460270 TACGGAGTGCATTCCCAATCTAAGATTGGATCAGACCGAGGGTTGCGGTAGCAGGACCAGTAGCA
66 TACGGACTGCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAGGACC---A-CA
* * * *
21460335 GGATTGGTAGCATGCAGGGGGGACCGAACCGATCCTTGGCTTGCGTATTCTACCTCTCCAGCCAG
127 -GA---GTAGCAAGCAGGGGGGACCGAACCGATCCTCGACTTGCGCATTCTACCTCTCCAGCCAG
* * * * * *
21460400 TTGAGCGCTCGGACGCTCGTTTTGTGGGTTGGCTTAGGCAT-GCGGAGTTCATTCCATGTCTAAG
188 CTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAG-GGAGTTCATTCCATGTCTAAG
*
21460464 CCCCAGCCAGACCGAGGGTTGTGGCAGC-AGGACCGGCAGCGGGATCGACAGCACGCAGAGGTGA
252 CCCCAGCCAGACAGAGGGTTGTGGCAGCGA-GACCGGCAGCGGGATCGACAGCACGCAGAGGTGA
21460528 ATCGAGCTGATCCCCGGCTTGCACATTATGCCTCTCCAGCCAGT
316 ATCGAGCTGATCCCCGGCTTGCACATTATGCCTCTCCAGCCAGT
* * *
21460572 TGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
1 TGAGCACCCACACGCACGTTTCATGGGCTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAAC
* * * *
21460636 ATATGGACTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGTAGCAGGA-C-CA-A-
65 ATACGGACTGCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAGGACCACAGAG
* * ** *
21460697 TAGCAAGCAGGGGGGACCGAGCCGATCCTCGACTTGTGCATTCTACCTCTCTGGTCAGCTGAGCG
130 TAGCAAGCAGGGGGGACCGAACCGATCCTCGACTTGCGCATTCTACCTCTCCAGCCAGCTGAGCG
*
21460762 CCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
195 CCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
21460827 AGACAGAGGGTTGTGGCAGCGAGACCGGCAGC
260 AGACAGAGGGTTGTGGCAGCGAGACCGGCAGC
21460859 ACGCAAAGGG
Statistics
Matches: 254, Mismatches: 30, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
355 141 0.56
356 2 0.01
359 1 0.00
361 2 0.01
366 1 0.00
367 104 0.41
368 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (359 bp):
TGAGCACCCACACGCACGTTTCATGGGCTGACTTAGGCATACGGAGTTCATCCCATGTCTAAACA
TACGGACTGCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAGGACCACAGAGT
AGCAAGCAGGGGGGACCGAACCGATCCTCGACTTGCGCATTCTACCTCTCCAGCCAGCTGAGCGC
CCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
GACAGAGGGTTGTGGCAGCGAGACCGGCAGCGGGATCGACAGCACGCAGAGGTGAATCGAGCTGA
TCCCCGGCTTGCACATTATGCCTCTCCAGCCAGT
Found at i:21460935 original size:159 final size:160
Alignment explanation
Indices: 21460752--21461138 Score: 399
Period size: 159 Copynumber: 2.4 Consensus size: 160
21460742 CCTCTCTGGT
* * * *
21460752 CAGCTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
1 CAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTA
* * ** * *
21460817 AGCCCCAGTCAG-ACAGAGGGTTGTGGCAGCGA-GACCGGCAGCACGCAAAGG-GGGATCGGGCC
66 AGCACCAGACAGAACAGAGGGTTGCAGCAG-GAGGACCGACAGCACGC-AAGGAGGGATCAGGCC
* * * *
21460879 TA-TCTCTGGCTTGCGCATTATGCCTCTCCGAT
129 -AGTCCCCGGCTTACGCATTATGCCTCTCCGAC
* * * * *
21460911 CGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTAATTCCCA-GTGT
1 CAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTAATT-CCATGTCT
*** * * * ** *
21460975 AAG-ATTGGACCGAACTGAGGGTTGCAGCAGTAGGATTGACAGCACGCAGGGAGGGATCAGGCCA
65 AAGCACCAGACAGAACAGAGGGTTGCAGCAGGAGGACCGACAGCACGCAAGGAGGGATCAGGCCA
*
21461039 GTCCCCGGCTTACGCATTCTGCCTCTCCGAC
130 GTCCCCGGCTTACGCATTATGCCTCTCCGAC
* * * *
21461070 CAGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATCTCTA
1 CAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTA
21461135 AGCA
66 AGCA
21461139 TACAGAGTTC
Statistics
Matches: 183, Mismatches: 38, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
158 11 0.06
159 168 0.92
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (160 bp):
CAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTA
AGCACCAGACAGAACAGAGGGTTGCAGCAGGAGGACCGACAGCACGCAAGGAGGGATCAGGCCAG
TCCCCGGCTTACGCATTATGCCTCTCCGAC
Found at i:21461321 original size:184 final size:184
Alignment explanation
Indices: 21460953--21461321 Score: 415
Period size: 184 Copynumber: 2.0 Consensus size: 184
21460943 TGACTTAGGT
* * * *
21460953 ATACGGAGTTAATTCCCAGTGTAAGATTGGACCGAACTGAGGGTTGCAGCAGTAGGATTGACAGC
1 ATACAGAGTTAATTCCCAGTCTAAGATTAGACCGAACTGAGGGTTGCAGCAGCAGGATTGACAGC
* * *
21461018 ACGCAGGGAGGGATCAGGCCAGTCCCCGGCTTACGCATTCTGCCTCTCCGACCAGCTGAGCGCCC
66 AC-CAGGGAGGGATCAGGCCAGTCCCCGACTTACACATTCTACCTCTCCGACCAGCTGAGCGCCC
* * *
21461083 GCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATCTCTAAGC
130 GCACGCTCATGTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATCTCTAAGC
* * **
21461138 ATACAGAGTTCATTCCCAGTCTAAGATTAGACCGAAGC-GAGGGTTGCAGCTGCAGGATTGGTAG
1 ATACAGAGTTAATTCCCAGTCTAAGATTAGACCGAA-CTGAGGGTTGCAGCAGCAGGATTGACAG
* * * * * *
21461202 CA-CATGGGGGGGATC-GAG-CTGATCCCTGACTTTCACATTCTACCTCTCCGATCGGCTGA-CT
65 CACCA-GGGAGGGATCAG-GCCAG-TCCCCGACTTACACATTCTACCTCTCCGACCAGCTGAGC-
* * * * * *
21461263 GCCCGTATGCTCGTGTCGTGGGTTGGCTTAAGCATACGTAGTTCATTCCATGTCTAAGC
126 GCCCGCACGCTCATGTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATCTCTAAGC
21461322 CCCAGTCAAA
Statistics
Matches: 153, Mismatches: 26, Indels: 11
0.81 0.14 0.06
Matches are distributed among these distances:
183 6 0.04
184 90 0.59
185 56 0.37
186 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (184 bp):
ATACAGAGTTAATTCCCAGTCTAAGATTAGACCGAACTGAGGGTTGCAGCAGCAGGATTGACAGC
ACCAGGGAGGGATCAGGCCAGTCCCCGACTTACACATTCTACCTCTCCGACCAGCTGAGCGCCCG
CACGCTCATGTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATCTCTAAGC
Found at i:21461364 original size:869 final size:858
Alignment explanation
Indices: 21459905--21461689 Score: 1834
Period size: 869 Copynumber: 2.1 Consensus size: 858
21459895 TGCATGCTCA
* * *
21459905 TTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTTCATGTCTAAGCCCCAGCTGGATCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTAGATCGAGGGTT
* * * *
21459970 GTGGCGACGGGACCGGCAGCATGTAGAGGGGAATCGAGCCGATCCTCGACTTGCGCATTATGCCT
66 GTGGCGACGAGACCGGCAGCACGCAAAGGGGAATCGAGCCGATCCTCGACTTGCGCATTATGCCT
* * *
21460035 CTCCAGCTGGCTCAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGATTTCATTCC
131 CTCCAGCTGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCC
* * * * *
21460100 TAGTCTAAGATCGACCTCGATCGAGGGTTGCAGTAATAAGATCGACAGCACGTAGGCGGGGACCG
196 CAGTCTAAGATCGACCTCGAACGAGGGTTGCAGCAATAAGATCGACAGCACGCAGGCGGGGACAG
* * * * ** * *
21460165 AGCCGATCCTCAACGTGCACATTTGGCCTTTCCGGCTGGCTGAGCACCCGCACGCACGTTTCGTG
261 AGCCGATCCCCAACGTACACATTTGGCCTCTCCGACCAGCTGAGCACCCGCACGCACATTTCATG
* *
21460230 GGCTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACATACGGAGTGCATTCCCAATCTAAGA
326 GGCTGGCTTAGGCATACGGAGTTCATTCCATCTCTAAACATACAGAGTGCATTCCCAATCTAAGA
* *
21460295 TTGGATCAGACCGAGGGTTGCGGTAGCAGGACCAGTAGCAGGATTGGTAGCATGCAGGGGGGACC
391 TT-G-TCAGACCGAGCGTAGCGGTAGCAGGA-CA-TAGCAGGATTGGTAGCATG-AGGGGGGACC
* * ** * * * *
21460360 GAACCGATCCTTGGCTTGCGTATTCTACCTCTCCAGCCAGTTGAGCGCTCGGACGCTCGTTTTGT
451 GAACCGATCCCTGACTTGCACATTCTACCTCTCCAGCCAGCTGAGCGCCCGGACGCTCGTGTCGT
* * *
21460425 GGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCA
516 GGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGCA
* * *
21460490 GCAGGACCGGCAGCGGGATCGACAGCACGCAGAGGTGAATCGAGCTGATCCCCGGCTTGCACATT
581 GCAGGACCGACAGC---AT--ACAG--CG--GA-G-G-ATCGAACTGATCCCCGACTTGCACATT
* *
21460555 ATGCCTCT-C-CAG-C-C-A-GTTGAGCACCC-ACACGCTCGTTTCATGGGTTGACTTAGGCATA
634 ATGCCTCTCCGCAGCCTCGACGTTGAGCACCCGA-ACACTCATTTCATGGGTTGACTTAGGCATA
* * *
21460613 CGGAGTTCATCCCCAGTCTAAGCATATGGACTTCATTCCCAGTCTAAGATCGGA-TCAGACTGAG
698 CGGAGTTCATCCCCAGTCTAAGCATACGGACTTCATTCCCAATCTAAGATCAGACT-AGACTGAG
* * *
21460677 GGTTGCGGTAGCAGGACCAATAGCAAGCAGGGGGGACCGAGCCGATCCTCGACTTGTGCATTCTA
762 GGTTGCGGCAGCAGGACCAACAGCAAGCAGGGGGGACCGAGCCGATCCTCGACTTGCGCATTCTA
* *
21460742 CCTCTCTGGTCA-GCTGAGCGCCCGCACACCCG
827 CCTCTC-CGACAGGCTGAGCGCCCGCACACCCG
*
21460774 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGA-CAGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCT-AGATC-GAGGG
* * * *
21460837 TTGTGGC-AGCGAGACCGGCAGCACGCAAAGGGGGATCGGGCCTAT-CTCTGGCTTGCGCATTAT
64 TTGTGGCGA-CGAGACCGGCAGCACGCAAAGGGGAATCGAGCCGATCCTC-GACTTGCGCATTAT
* * * * *
21460900 GCCTCTCC-GATCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTA
127 GCCTCTCCAGCT-GGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTA
* * * * *
21460964 ATTCCCAGTGTAAGATTGGA-C-CGAACTGAGGGTTGCAGCAGTAGGATTGACAGCACGCAGG-G
191 ATTCCCAGTCTAAGA-TCGACCTCGAAC-GAGGGTTGCAGCAATAAGATCGACAGCACGCAGGCG
** * * *
21461026 AGGGATCAG-GCC-AGTCCCCGGCTTACGCATTCT-GCCTCTCCGACCAGCTGAGCGCCCGCACG
254 -GGGA-CAGAGCCGA-TCCCCAACGTACACATT-TGGCCTCTCCGACCAGCTGAGCACCCGCACG
* * * * *
21461088 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATCTCTAAGCATACAGAGTTCATTC
315 CACATTTCATGGGCTGGCTTAGGCATACGGAGTTCATTCCATCTCTAAACATACAGAGTGCATTC
* *
21461153 CCAGTCTAAGA-T-T-AGACCGAAGCG-AG-GGTTGCA-G-C-T-GCAGGATTGGTAGCACATG-
380 CCAATCTAAGATTGTCAGACCG-AGCGTAGCGGTAGCAGGACATAGCAGGATTGGTAG--CATGA
* * * * * * * *
21461208 GGGGGGATCGAGCTGATCCCTGACTTTCACATTCTACCTCTCC-GATCGGCTGA-CTGCCCGTAT
442 GGGGGGACCGAACCGATCCCTGACTTGCACATTCTACCTCTCCAG-CCAGCTGAGC-GCCCGGAC
* * **
21461271 GCTCGTGTCGTGGGTTGGCTTAAGCATACGTAGTTCATTCCATGTCTAAGCCCCAGTCAAATTGA
505 GCTCGTGTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGA
** *
21461336 GGGTTATGGTAGCAGGACCAGTAGCAGGATTGACAGCATACAGTGGAGGATCGAACTGATCCCCG
570 GGG-T-T-GT----GG--C---AGCAGGACCGACAGCATACAGCGGAGGATCGAACTGATCCCCG
*
21461401 ACTTGCATATTATGCCTCTCCGGTCAGCCTCTCTGACCGGTTGAGCACCCGAACACTCATTTCAT
623 ACTTGCACATTATGCCTCTCC-G-CAG-C-CTC-GA-C-GTTGAGCACCCGAACACTCATTTCAT
* * * *
21461466 GGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTTATTCCCAATTTAAG
681 GGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGACTTCATTCCCAATCTAAG
* * *** * * * *
21461531 ATCAGACTGGACTGAGGGTTGCGGCAGTAGGATTGACAGCATGTAGGGGGGATCGGGCCGATCCT
746 ATCAGACTAGACTGAGGGTTGCGGCAGCAGGACCAACAGCAAGCAGGGGGGACCGAGCCGATCCT
* * * * *
21461596 CGGCTTGCGCATTCTGCCTCTCCGACAGGCTGAGTGCCCGCACGCTCG
811 CGACTTGCGCATTCTACCTCTCCGACAGGCTGAGCGCCCGCACACCCG
*
21461644 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
21461690 ATATGGAGTT
Statistics
Matches: 758, Mismatches: 114, Indels: 87
0.79 0.12 0.09
Matches are distributed among these distances:
856 2 0.00
857 149 0.20
858 4 0.01
859 6 0.01
860 5 0.01
861 3 0.00
862 2 0.00
863 6 0.01
864 14 0.02
865 5 0.01
866 3 0.00
867 1 0.00
868 15 0.02
869 323 0.43
870 218 0.29
871 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (858 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTAGATCGAGGGTT
GTGGCGACGAGACCGGCAGCACGCAAAGGGGAATCGAGCCGATCCTCGACTTGCGCATTATGCCT
CTCCAGCTGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCC
CAGTCTAAGATCGACCTCGAACGAGGGTTGCAGCAATAAGATCGACAGCACGCAGGCGGGGACAG
AGCCGATCCCCAACGTACACATTTGGCCTCTCCGACCAGCTGAGCACCCGCACGCACATTTCATG
GGCTGGCTTAGGCATACGGAGTTCATTCCATCTCTAAACATACAGAGTGCATTCCCAATCTAAGA
TTGTCAGACCGAGCGTAGCGGTAGCAGGACATAGCAGGATTGGTAGCATGAGGGGGGACCGAACC
GATCCCTGACTTGCACATTCTACCTCTCCAGCCAGCTGAGCGCCCGGACGCTCGTGTCGTGGGTT
GGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGCAGCAGG
ACCGACAGCATACAGCGGAGGATCGAACTGATCCCCGACTTGCACATTATGCCTCTCCGCAGCCT
CGACGTTGAGCACCCGAACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
TAAGCATACGGACTTCATTCCCAATCTAAGATCAGACTAGACTGAGGGTTGCGGCAGCAGGACCA
ACAGCAAGCAGGGGGGACCGAGCCGATCCTCGACTTGCGCATTCTACCTCTCCGACAGGCTGAGC
GCCCGCACACCCG
Found at i:21461530 original size:26 final size:26
Alignment explanation
Indices: 21461478--21461530 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
21461468 GTTGACTTAG
* *
21461478 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
21461504 GCATACGGAGTTTATTCCCAATTTAA
1 GCATACGGAGTTCATCCCCAATCTAA
21461530 G
1 G
21461531 ATCAGACTGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:21461692 original size:26 final size:26
Alignment explanation
Indices: 21461662--21461714 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21461652 GTTGGCTTAG
21461662 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
21461688 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21461714 G
1 G
21461715 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21462413 original size:26 final size:26
Alignment explanation
Indices: 21462377--21462426 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
21462367 GTTGACTTAG
21462377 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21462403 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
21462427 GTGATCAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21463300 original size:159 final size:158
Alignment explanation
Indices: 21463000--21463756 Score: 546
Period size: 159 Copynumber: 4.8 Consensus size: 158
21462990 GGGGACCAGA
* * * * *
21463000 CCGATCCCTGACTTGCGCATTTTGCCTTTCCGGCTGG-TTGAGTGCCCGCACCCCCGTTTCATGG
1 CCGATCCCTGGCTTGCGCATTATGCCTTTCCGGCTGGCTT-AGTGCCCGCACGCTCGTTTCGTGG
* * ** * * *
21463064 GTTGGCTTGGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CC-AGA-CGAAGAGTTATGG
65 GTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGA-ACCG-AGGGTTGTGA
* * * * * * *
21463125 TAGCGGGACCGGCAGCACGCAGAAAGGGACCGAG
126 CAGCAGGATCGACAGCACGCA-AAGGGGATCGGG
* * * *
21463159 CCGATCCCTGGCTTACGCATTATGCCTTTTCGGCTGGCTTAGCGCCCGCACGCTCGTTTCATGGG
1 CCGATCCCTGGCTTGCGCATTATGCCTTTCCGGCTGGCTTAGTGCCCGCACGCTCGTTTCGTGGG
* ** * *
21463224 TTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGATAGCA
66 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGACAGCA
* **
21463289 AGATCGACAGCACGCAGGGGTGGATCGGG
131 GGATCGACAGCACGCAAAGG-GGATCGGG
* * * * * * * * * * * *
21463318 CCGATCTCTGGCTCGTGCATTCTACCTCTCC-GATCGACTGAGTGCCCGCACACCCATTTCGTGG
1 CCGATCCCTGGCTTGCGCATTATGCCTTTCCGGCT-GGCTTAGTGCCCGCACGCTCGTTTCGTGG
* ** ** * * *
21463382 GTTGGCTTAGGCGTGGGGAGTTCATT-CCATGTCTAAGCCCCAG--CTAGATCGAGGGTTGTGGC
65 GTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGA-ACCGAGGGTTGTGAC
* * * * *
21463444 GGCGGGATCAATAGCACGCAAAGGGGGATAGGG
127 AGCAGGATCGACAGCACGCAAA-GGGGATCGGG
* * * * * * * *
21463477 TCGATCCCAGGCTTGCGCATTATGCCTCTCCGGCCGGCCTAGTGCCCTCGCGCTCATTTCGTGGG
1 CCGATCCCTGGCTTGCGCATTATGCCTTTCCGGCTGGCTTAGTGCCCGCACGCTCGTTTCGTGGG
* * * *
21463542 TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACCGGACCGAGGGTTGTGACAGCA
66 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGACAGCA
* *
21463607 GGATCGATAGCA-GACAAGGGGGGATCGGG
131 GGATCGACAGCACG-CAA-AGGGGATCGGG
* * * * * * * *** * *
21463636 TCG-TCCCCGGCTTACACATTCTGCCTCTCCGGCTGGCTGAGCAACCACACTCTCGTTTCGTGGG
1 CCGATCCCTGGCTTGCGCATTATGCCTTTCCGGCTGGCTTAGTGCCCGCACGCTCGTTTCGTGGG
* * *
21463700 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTG
66 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTG
21463757 CAGCAGTAGG
Statistics
Matches: 467, Mismatches: 114, Indels: 35
0.76 0.19 0.06
Matches are distributed among these distances:
158 113 0.24
159 336 0.72
160 18 0.04
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
CCGATCCCTGGCTTGCGCATTATGCCTTTCCGGCTGGCTTAGTGCCCGCACGCTCGTTTCGTGGG
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGACAGCA
GGATCGACAGCACGCAAAGGGGATCGGG
Found at i:21463499 original size:318 final size:318
Alignment explanation
Indices: 21463038--21463635 Score: 772
Period size: 318 Copynumber: 1.9 Consensus size: 318
21463028 TCCGGCTGGT
* * *
21463038 TGAGTGCCCGCACCCCCGTTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCC
1 TGAGTGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* ** * *
21463103 CCAGCCAGACGAAGAGTTATGGTAGCGGGACCGGCAGCACGCAGAAAGGGACCGAGCCGATCCCT
66 CCAGCCAGACGAAGAGTTATGGCAGCGGGACCAACAGCACGCAGAAAGGGACAGAGCCGATCCCA
* * * * *
21463168 GGCTTACGCATTATGCCTTTTCGGCTGGCTTAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
131 GGCTTACGCATTATGCCTCTCCGGCCGGCCTAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
* * *
21463233 GCATATAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGATAGCAAGATCGACA
196 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAAGATCGACA
21463298 GCACG-C-AGGGGTGGATCGGGCCGATCTCTGGCTCGTGCATTCTACCTCTCCGATCGAC
261 GCA-GACAAGGGG-GGATCGGGCCGATCTCTGGCTCGTGCATTCTACCTCTCCGATCGAC
* * *
21463356 TGAGTGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCGTGGGGAGTTCATTCCATGTCTAAGCC
1 TGAGTGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * * * * * * * * *
21463421 CCAGCTAGATCG-AGGGTTGTGGCGGCGGGATCAATAGCACGCA-AAGGGGGATAGGGTCGATCC
66 CCAGCCAGA-CGAAGAGTTATGGCAGCGGGACCAACAGCACGCAGAA-AGGGACAGAGCCGATCC
* * * * *
21463484 CAGGCTTGCGCATTATGCCTCTCCGGCCGGCCTAGTGCCCTCGCGCTCATTTCGTGGGTTGACTT
129 CAGGCTTACGCATTATGCCTCTCCGGCCGGCCTAGCGCCCGCACGCTCATTTCATGGGTTGACTT
* * * * *
21463549 AGGCATACGGAGTTCATTCCCAATCTAAGATTAGACCGGACCGAGGGTTGTGACAGCAGGATCGA
194 AGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAAGATCGA
*
21463614 TAGCAGACAAGGGGGGATCGGG
259 CAGCAGACAAGGGGGGATCGGG
21463636 TCGTCCCCGG
Statistics
Matches: 236, Mismatches: 40, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
317 3 0.01
318 226 0.96
319 7 0.03
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.22
Consensus pattern (318 bp):
TGAGTGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
CCAGCCAGACGAAGAGTTATGGCAGCGGGACCAACAGCACGCAGAAAGGGACAGAGCCGATCCCA
GGCTTACGCATTATGCCTCTCCGGCCGGCCTAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAAGATCGACA
GCAGACAAGGGGGGATCGGGCCGATCTCTGGCTCGTGCATTCTACCTCTCCGATCGAC
Found at i:21464288 original size:26 final size:26
Alignment explanation
Indices: 21464259--21464311 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21464249 GTTGGCTTAG
* *
21464259 GCATATGGATTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21464285 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21464311 G
1 G
21464312 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21464643 original size:26 final size:26
Alignment explanation
Indices: 21464613--21464665 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21464603 GTTGGCTGAG
21464613 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
21464639 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
21464665 G
1 G
21464666 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:21465357 original size:26 final size:26
Alignment explanation
Indices: 21465321--21465371 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
21465311 TTGACTTAGG
* *
21465321 CATACGGAGTTCATCCCCAGTCTAAA
1 CATACAGAGTTCATCCCCAATCTAAA
*
21465347 CATACAGAGTTCATTCCCAATCTAA
1 CATACAGAGTTCATCCCCAATCTAA
21465372 GATCAGACGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAATCTAAA
Found at i:21465707 original size:159 final size:157
Alignment explanation
Indices: 21465353--21465848 Score: 385
Period size: 159 Copynumber: 3.1 Consensus size: 157
21465343 TAAACATACA
* * * *
21465353 GAGTTCATTCCCAATCTAAGATCAGACGGGACTGAGGGTTGCGGCAGCATGATCCGCAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCCGCAGCACGAA
* * ** * *
21465418 AGGTGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGTACAC
66 AGGTGGATCGGGCCGATCCCCGGCTTGTGCATTATACCTCTCCGACCGACTCAGCACCCG-ACAC
* *
21465483 CTGTTTCGTGGGTTGGCTTAGGCATAGG
130 CTATTTCGTGGGTTGACTTAGGCATAGG
* ** * *
21465511 GAGTTCATT-CCATGTGTAAGCCCCAG-CTGGACTGAGGGTTGTGGCAGCGGGA-CCGGCAGCAC
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCC-GCAGCAC
* * *
21465573 GTAAAGGTGGATCGGGCCGATCCTCGGCTTGTGCATTATACCTCTTCGGCCGACTCAGCACCCG-
63 G-AAAGGTGGATCGGGCCGATCCCCGGCTTGTGCATTATACCTCTCCGACCGACTCAGCACCCGA
* * *
21465637 CATGCTCATTTCGTGGGTTGACTTATGCATATG
127 CA-CCT-ATTTCGTGGGTTGACTTAGGCATAGG
** * * * * * * *
21465670 GAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCAGTAGCAAGAT-CGACAGTACGT
1 GAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCCG-CAGCACGA
* ** * * * * * * * ** **
21465734 AGGGTGGGATCAAGCCGATCCCCGACTTGCGCTTTCTACCTCTCTGGCCGACTGAGTGCTTG-CA
65 AAGGT-GGATCGGGCCGATCCCCGGCTTGTGCATTATACCTCTCCGACCGACTCAGCACCCGACA
* * * *
21465798 CGCTCGTTTCGTGGGTTGGCTTAAGCATACG
129 C-CT-ATTTCGTGGGTTGACTTAGGCATAGG
21465829 GAGTTCATT-CCATGTCTAAG
1 GAGTTCATTCCCA-GTCTAAG
21465849 CATACGGAGT
Statistics
Matches: 268, Mismatches: 57, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 7 0.03
158 55 0.21
159 203 0.76
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCCGCAGCACGAA
AGGTGGATCGGGCCGATCCCCGGCTTGTGCATTATACCTCTCCGACCGACTCAGCACCCGACACC
TATTTCGTGGGTTGACTTAGGCATAGG
Found at i:21465873 original size:26 final size:26
Alignment explanation
Indices: 21465819--21465874 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
21465809 TGGGTTGGCT
*
21465819 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCATGCC
21465845 TAAGCATACGGAGTTCATTCCCA-GCC
1 TAAGCATACGGAGTTCATT-CCATGCC
21465871 TAAG
1 TAAG
21465875 ATTTTGAGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCATGCC
Found at i:21470347 original size:26 final size:26
Alignment explanation
Indices: 21470311--21470363 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21470301 GTTGGCTTAG
21470311 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21470337 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21470363 G
1 G
21470364 ATCTGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21470556 original size:26 final size:26
Alignment explanation
Indices: 21470520--21470572 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21470510 GTTGACTTAG
21470520 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21470546 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21470572 G
1 G
21470573 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21470892 original size:26 final size:26
Alignment explanation
Indices: 21470863--21470914 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21470853 GTTAGCTTAG
21470863 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21470889 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21470915 CAGTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21471628 original size:25 final size:26
Alignment explanation
Indices: 21471593--21471644 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
21471583 GTTGACTTAG
21471593 GCATACAGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
21471618 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21471644 G
1 G
21471645 ATTACACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21471945 original size:159 final size:156
Alignment explanation
Indices: 21471618--21471964 Score: 398
Period size: 159 Copynumber: 2.2 Consensus size: 156
21471608 CCCAGTCTAA
* * * *
21471618 GCATACGGAGTTCATTCCCA-GTCTAAG-ATTACACCGGACCGAGGGTTATGGTAGTAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACTACACCGAACCGAGGGTTATGGTAGTAGGACCGA
* * * * ** * *
21471681 TAGCATGCAGGGGGGACGGGTCGATCCCGCTTGCGCATTCTGCCTCTTTGGCCGGCTGAGCGCCC
65 CAGCATGCAGGGGGGACGAGCCGATCCCGCTTGCGCATTCTACCTCTCCGGCCGACTGAACGCCC
* *
21471746 GCACGCCCGTTTCATAGGTTGGCTTAG
130 GCACACCCATTTCATAGGTTGGCTTAG
* * * * *
21471773 TCATAGGGAGTTCATTCCATGTCTAAGCCCTA-GCCGAACCGAGGGTTGA-GGTAGTGGGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAGCACTACACCGAACCGAGGGTT-ATGGTAGTAGGACCGA
*
21471836 CAGCATGCAGAGGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTACCTCTCCGGCTGACTGAAC
65 CAGCATGCAG-GGGGGA-CGAGCCGATCC-C-GCTTGCGCATTCTACCTCTCCGGCCGACTGAAC
* * *
21471901 GCCCGCACACTCATTTCGTGGGTTGGCTTAG
126 GCCCGCACACCCATTTCATAGGTTGGCTTAG
21471932 GCATACGGAGTTCATTCCATGTCTAAGCA-TACA
1 GCATACGGAGTTCATTCCATGTCTAAGCACTACA
21471965 GAGTTCATTC
Statistics
Matches: 157, Mismatches: 27, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
154 3 0.02
155 54 0.34
156 9 0.06
157 9 0.06
158 3 0.02
159 79 0.50
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACTACACCGAACCGAGGGTTATGGTAGTAGGACCGAC
AGCATGCAGGGGGGACGAGCCGATCCCGCTTGCGCATTCTACCTCTCCGGCCGACTGAACGCCCG
CACACCCATTTCATAGGTTGGCTTAG
Found at i:21471968 original size:26 final size:26
Alignment explanation
Indices: 21471932--21471981 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
21471922 GTTGGCTTAG
*
21471932 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
21471958 GCATACAGAGTTCATTCTATGTCT
1 GCATACAGAGTTCATTCCATGTCT
21471982 GAGCGCCCGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:21472444 original size:26 final size:26
Alignment explanation
Indices: 21472414--21472466 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21472404 GTTGACTTAG
*
21472414 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
21472440 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21472466 G
1 G
21472467 AGCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21472743 original size:159 final size:157
Alignment explanation
Indices: 21472504--21472943 Score: 492
Period size: 159 Copynumber: 2.8 Consensus size: 157
21472494 CAGAATTGAT
* *
21472504 AGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCAGGCTGAGCGC
1 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGTC-GGCTGAGCGC
* * *
21472569 CCACACGC-CCGTTTTGTGGGGTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
65 CCGCACGCTCC-TTTTGTGGGGTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATC
* ** ** *
21472633 GGACCGAGGGTTGTGGCAGTGGGACCGGC
129 GAACCGAGGGTTGCAGCAGCAGGACCGAC
* * * * * *
21472662 AGCACGCAGATGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCGCCAGTCGGCTCAGTG
1 AGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCG
* * ****
21472727 CCCGCATGCTCCTTTTGT-GGGTGGACTTAGGCATACAGAGTTCATTCC-TAGTCTAAGATTGAA
64 CCCGCACGCTCCTTTTGTGGGGTGG-CTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCAA
** *
21472790 TCGAACCGAGGGTTGCATTAGCAGGATCGAC
127 TCGAACCGAGGGTTGCAGCAGCAGGACCGAC
*
21472821 AGCACGCAGGGGGGGA-CTGGGCCGATCCCCGGCTTGCGCATTCTGTCTCTCCGATCGGCTGAGC
1 AGCACGCA-GGGGGGATC-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG-TCGGCTGAGC
* * * *
21472885 GCCCGCACGTTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGC
63 GCCCGCACGCTCCTTTTGTGGGGTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
21472944 ATACGAGTTC
Statistics
Matches: 232, Mismatches: 40, Indels: 19
0.80 0.14 0.07
Matches are distributed among these distances:
158 18 0.08
159 203 0.88
160 11 0.05
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.23
Consensus pattern (157 bp):
AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGTCGGCTGAGCGCC
CGCACGCTCCTTTTGTGGGGTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGA
ACCGAGGGTTGCAGCAGCAGGACCGAC
Found at i:21472954 original size:25 final size:26
Alignment explanation
Indices: 21472916--21472967 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
21472906 GTTGGCTTAG
21472916 GCATACGGAGTTCATTCAATGTCTAA
1 GCATACGGAGTTCATTCAATGTCTAA
**
21472942 GCATAC-GAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCAATGTCTAA
21472967 G
1 G
21472968 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCAATGTCTAA
Found at i:21473326 original size:171 final size:168
Alignment explanation
Indices: 21472942--21473467 Score: 456
Period size: 171 Copynumber: 3.2 Consensus size: 168
21472932 CAATGTCTAA
* *
21472942 GCATACGAGTTCATTCCCT-GTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGTAGGACCAGCA
1 GCATACGAGTTCATT-CCTAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGACCAGCA
* *
21473006 GCAGTATCGATAGCACGCAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGATC
65 GCAGTATCGATAGCACGCAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACC
* * *
21473071 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
130 GGCTCAGCGCCCGCACACTCATTTCGTGGGTTGACTTAG
* * ** * * *
21473110 GCATACAGAGTTCATACC-ATGTCTAAG-CCCCAGCCGGACCGAGGGTTGTGGTAGCAGGACC-G
1 GCATAC-GAGTTCATTCCTA-GTCTAAGATCGGA-CCGGATCGAGGGTTGCGGCAGCAGGACCAG
* * * * *
21473172 ACAGCAAG-ATCGGTAGGACGCAGAGGGGGA-CTGGGTCGATCCTCGGCTTGCTCATTATGCCTC
63 -CAGC-AGTATCGATAGCACGC--AGGGGGATC-GGGCCGATCCCCGGCTTGCGCATTATGCCTC
* * *
21473235 TTCGGCCGGCTCAGCGCCCGCACACTCATTTCGTGGGTTGACTTAT
123 TCCGACCGGCTCAGCGCCCGCACACTCATTTCGTGGGTTGACTTAG
* * **
21473281 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGAATCGAGGGTTGCGGCAGTAGGA-TTG-A
1 GCATAC-GAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGACCAGCA
* * ** * * *
21473344 -CAGCA-C-AT---A---AGGGGGATTGGGTTGATCCCCGACTTACGCATTCTGCCTCTCCGACC
65 GCAGTATCGATAGCACGCAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACC
* * * * * * * *
21473400 GACTGAACACCCGCACGCTCGTTTCATGGGTTGGCTTAG
130 GGCTCAGCGCCCGCACACTCATTTCGTGGGTTGACTTAG
*
21473439 GCATACAGAGTTCATTCCCAGTCTAAGAT
1 GCATAC-GAGTTCATTCCTAGTCTAAGAT
21473468 TTTGAGCCAC
Statistics
Matches: 290, Mismatches: 54, Indels: 38
0.76 0.14 0.10
Matches are distributed among these distances:
158 94 0.32
163 1 0.00
166 1 0.00
167 3 0.01
168 13 0.04
169 54 0.19
170 3 0.01
171 118 0.41
172 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (168 bp):
GCATACGAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGACCAGCAG
CAGTATCGATAGCACGCAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCG
GCTCAGCGCCCGCACACTCATTTCGTGGGTTGACTTAG
Found at i:21474163 original size:26 final size:26
Alignment explanation
Indices: 21474134--21474186 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21474124 GTTGACTTAG
*
21474134 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
21474160 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21474186 G
1 G
21474187 ATTGGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21474684 original size:26 final size:26
Alignment explanation
Indices: 21474633--21474685 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21474623 GTTGGCTTAG
*
21474633 GCATACGGAGTTCAATCCATGTCTAA
1 GCATACGGAGTTCAATCCATGCCTAA
* *
21474659 GCATATGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCAAT-CCATGCCTAA
21474685 G
1 G
21474686 ATCGAACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCATGCCTAA
Found at i:21475273 original size:158 final size:157
Alignment explanation
Indices: 21474986--21475354 Score: 433
Period size: 158 Copynumber: 2.3 Consensus size: 157
21474976 TGAGCGCCTA
* * * ** **
21474986 CACGCTCATTTCATGGGTTGACTTCAGCTTACGGAGTTCATTCCCAGTCTAAGATTGGACTGGAT
1 CACGCTCGTTTCATGCGTTGACTT-AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAT
* * * *
21475051 CGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGGGGGGACTGAGTCGATCCCCGGCTTACGCAT
65 CGAGGGTTACAGTAGCAGGATTGACAGCACGCAGGGGGGACTGAGTCGATCCCCAGCTTACGCAT
*
21475116 TCTACCTTTCCGACCGGCTGAGCACCCG
130 TCTACCTCTCCGACCGGCTGAGCACCCG
*
21475144 CACG-TCCGTTTTATGCGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
1 CACGCT-CGTTTCATGCGTTGACTTA-GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * *
21475208 -CTGAGGGTTATAGTAGTAGGATTGACAGCACGCAGGGGGGA-TCG-GGCTGATCCCCAGCTTGC
64 TC-GAGGGTTACAGTAGCAGGATTGACAGCACGCAGGGGGGACT-GAGTC-GATCCCCAGCTTAC
* * *
21475270 GCATTCTATCTCTCCGGCCGGCTGAGCGCCCG
126 GCATTCTACCTCTCCGACCGGCTGAGCACCCG
* *
21475302 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCACGTCTAAG
1 CACGCTCGTTTCATGCGTTGACTTA-GCATACGGAGTTCATTCCCA-GTCTAAG
21475355 CATACGGAGT
Statistics
Matches: 180, Mismatches: 24, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
157 9 0.05
158 170 0.94
159 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (157 bp):
CACGCTCGTTTCATGCGTTGACTTAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC
GAGGGTTACAGTAGCAGGATTGACAGCACGCAGGGGGGACTGAGTCGATCCCCAGCTTACGCATT
CTACCTCTCCGACCGGCTGAGCACCCG
Found at i:21476445 original size:159 final size:158
Alignment explanation
Indices: 21476075--21476576 Score: 357
Period size: 158 Copynumber: 3.2 Consensus size: 158
21476065 CCCCATCTAA
* * * * * * * * *
21476075 GCATATGGAGTTCATTCCCA-GTCTAAGATC-GAACCGGACCGAGGGTTGCGGCAGTAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAG-ACTGGACTGAGGGCTACGGTAGAAGGACCGA
* * * * * * * * ** * *
21476138 CAGCACACAGGGGGGATCGGGTCGATCCTCGGCTTGCCCATTCTACCTCTTCGGCCGACTGAGCG
64 CAGCACACAGGGGGGACCCGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAACCGGCTCAGCG
*** * * *
21476203 CCCGCTCGCCCGTTTCATGGGTTGGCTTAG
129 CCCGCAAACTCGTTTCGTGGGTTGGATTAG
* ** *** * * * ** * *
21476233 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAAACCGATGGTTGTGGTAGTAGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACTGGACTGAGGGCTACGGTAGAAGGACCGAC
** * * * *
21476297 AGCACGTAGAGGGGGACCCTGCCGATCCCGGGCTTGTGCATTATGCCTCTCCAACCGGTTCAGCG
65 AGCACACAG-GGGGGACCCGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAACCGGCTCAGCG
*
21476362 GCCGCAAACTCGTTTCGTGGGTT-GACTTAG
129 CCCGCAAACTCGTTTCGTGGGTTGGA-TTAG
**
21476392 GCATACGGAGTTCATTTCCA-GTCTAAGATCAGACTGGACTGAGGGCTACGGTAGAAGGATTGAC
1 GCATACGGAGTTCA-TTCCATGTCTAAGATCAGACTGGACTGAGGGCTACGGTAGAAGGACCGAC
* * * * * * * * *
21476456 AGCACACAGGGGGGGCCGGGCCGATCCCCGGCTTGCGCATTCTGGCTTTTCGACCGGCTGAGTGC
65 AGCACACAGGGGGGACCCGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAACCGGCTCAGCGC
* ***
21476521 CCGTACGTTCGTTTCGTGGGTTGGATTAG
130 CCGCAAACTCGTTTCGTGGGTTGGATTAG
21476550 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
21476577 CATACGGAGT
Statistics
Matches: 266, Mismatches: 69, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
157 8 0.03
158 143 0.54
159 109 0.41
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACTGGACTGAGGGCTACGGTAGAAGGACCGACA
GCACACAGGGGGGACCCGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAACCGGCTCAGCGCC
CGCAAACTCGTTTCGTGGGTTGGATTAG
Found at i:21476579 original size:26 final size:26
Alignment explanation
Indices: 21476550--21476601 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21476540 GTTGGATTAG
21476550 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21476576 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21476602 TATTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21477309 original size:26 final size:26
Alignment explanation
Indices: 21477273--21477325 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21477263 GTTGACTTAG
21477273 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21477299 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21477325 G
1 G
21477326 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21477524 original size:158 final size:157
Alignment explanation
Indices: 21477350--21477801 Score: 485
Period size: 159 Copynumber: 2.9 Consensus size: 157
21477340 AGGGTTGCTA
*
21477350 TAGCAGGATCGACAGCACGCAAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
1 TAGCAGGATCGACAGCACGCAAGGGGGATCGGG-CGATCCCTGGCTTGCGCATTCTGCCTCTCCG
** * * * * *
21477415 ACCGACTTAGTGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
65 GTCGGCTCAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* * *
21477480 TAAGCCCCAGCCAGACCAAGGGTTGTGG
130 TAAGACCCAACCAGACCAAGGGCTGTGG
* * * ** * *
21477508 TAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCAATCCCTGGCTTGCGCATTTTGCCTCTCC
1 TAGCAGGATCGACAGCACGCA-AGGGGGA-TCGGGCGATCCCTGGCTTGCGCATTCTGCCTCTCC
* * ** * * * *
21477573 GGTCGGCTCAACGCCCGTACACTCATTTCGTGGGTTGACTTGGGCATACGGAGTTCATTCCCA-G
64 GGTCGGCTCAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATG
* * *
21477637 TCTAAGATCGAACCAGACCGAGGGCTGTGG
128 TCTAAGACCCAACCAGACCAAGGGCTGTGG
* * * * *
21477667 CAGCAGGATCGACAGCACGCAGGGGGGATCGGGCTGATCCCTGACTTGTGCATTCTGCCTCTCTG
1 TAGCAGGATCGACAGCACGCAAGGGGGATCGGGC-GATCCCTGGCTTGCGCATTCTGCCTCTCCG
* * * * *
21477732 GTTGGCTGAGCGCTTC-CATGCTCGTTTCATGGGTTGGATTAGGCATACGTAGTTCATTCCATGT
65 GTCGGCTCAGCGC-CCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
21477796 CTAAGA
129 CTAAGA
21477802 ATACGGAGTT
Statistics
Matches: 234, Mismatches: 54, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
157 6 0.03
158 101 0.43
159 122 0.52
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (157 bp):
TAGCAGGATCGACAGCACGCAAGGGGGATCGGGCGATCCCTGGCTTGCGCATTCTGCCTCTCCGG
TCGGCTCAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGACCCAACCAGACCAAGGGCTGTGG
Found at i:21477806 original size:26 final size:26
Alignment explanation
Indices: 21477776--21477827 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21477766 TGGATTAGGC
*
21477776 ATACGTAGTTCATT-CCATGTCTAAGA
1 ATACGGAGTTCATTCCCA-GTCTAAGA
21477802 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
21477828 TCAGATCAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:21477944 original size:182 final size:183
Alignment explanation
Indices: 21477618--21477982 Score: 452
Period size: 182 Copynumber: 2.0 Consensus size: 183
21477608 TGACTTGGGC
* ***
21477618 ATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGCTGTGGCAGCAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGAC-GCAACAGCAGGATCGACAGC
* * ** *** *
21477683 ACGCAGGGGGGATCGGGCTGATCCCTGACTTGTGCATTCTGCCTCTCTGGTTGGCTGAGCGCTTC
65 ACGCAGGAGGGATCGGGCCGATCCCCAACTTGTGCATTCTGCCTCTCTGACCGGCTGAGCGCTCC
* * *
21477748 CATGCTCGTTTCATGGGTTGGATTAGGCATACGTAGTTCATTCCATGTCTAAGA
130 CATGCCCATTTCATGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGA
* *
21477802 ATACGGAGTTCATTCCCAGTCTAAGATC-AGATCAGACCGAGGAC-CAACAGTAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGACGCAACAGCAGGATCGACAGC
* *
21477865 ACGCAGGAGGGA-CTGGGCCGATCCCCAACTTGTGCATTTTGCCTCTCCT-ACCGGTTGAGCGC-
65 ACGCAGGAGGGATC-GGGCCGATCCCCAACTTGTGCATTCTGCCTCT-CTGACCGGCTGAGCGCT
* * *
21477927 CCGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAG
128 CC-CATGCCCATTTCATGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAG
21477983 CCCTAGCTGG
Statistics
Matches: 155, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
181 2 0.01
182 110 0.71
183 3 0.02
184 40 0.26
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (183 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGACGCAACAGCAGGATCGACAGCA
CGCAGGAGGGATCGGGCCGATCCCCAACTTGTGCATTCTGCCTCTCTGACCGGCTGAGCGCTCCC
ATGCCCATTTCATGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGA
Found at i:21478260 original size:329 final size:316
Alignment explanation
Indices: 21477810--21478629 Score: 914
Period size: 329 Copynumber: 2.6 Consensus size: 316
21477800 GAATACGGAG
* ** * *
21477810 TTCATTCCCAGTCTAAGATCAGATCAGACCG-AGG-ACCAACAGTAGGATCGACAGCACG-CAGG
1 TTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCAGCAGTAGGATCGACAGCACGTAAGG
* * * * *
21477872 AGGGACTGGGCCGATCCCCAACTTGTGCATTTTGCCTCTCCTACCGGTTGAGCGCCCGCATGCCC
66 -GGGAC-GGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCATGCCC
* * * *
21477937 ATTTCATGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCTAGCTGGACCGAGGGT
129 ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCTAGCCGGACAGAGGGT
* * * ** * *
21478002 TGTGGCAGC-GAGACCGACAGCAGGTAGAGGGGGACCTGG-CCAATCACCGGTTTGCTCATTATG
194 TGTGGCAGCAG-GACCGACAGCACGCAGAAGGGGACC-GGACCAATCACCGACTTACGCATTATG
* * * *
21478065 CCTCTCCGGCCGGCTCAGAGCTCGCACGCTCATTTCATGGTTTGACTTAGGCATACAGAG
257 CCTCTCCGGCCGGCTCAAAGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAA
* ** *
21478125 TTCATTGCCAGTCTAAGATCAGACTGGATCGAAGGTTGCGGTAGTAGGACCAGCTACAGGATCGA
1 TTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGC------A-G--CAG-T--AGGATCGA
* * * *
21478190 CAACACGTAAGGGGGATCGGGCCGATCCTCGACTTGCACATTCTGCCTCTCCGACCGGCTGAGTG
54 CAGCACGTAAGGGGGA-CGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * * * *
21478255 CCCGCATGCCTATTTCGTGGGTTGGCTGAGGCATAGGAAGTTCATTCCATGTCTAAGCCGTAGCC
118 CCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCTAGCC
* * * *
21478320 GGACAGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAAGGGGACCGGATCGATCCCCGACTTA
183 GGACAGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAAGGGGACCGGACCAATCACCGACTTA
* * * *
21478385 CGCATTATGCCTCTCCGGTCGGCTGAAAGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATAC
248 CGCATTATGCCTCTCCGGCCGGCTCAAAGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC
*
21478450 GGAA
313 AGAA
* *
21478454 TTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCAGCAGTAGGATCGACCGCACGTATGG
1 TTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCAGCAGTAGGATCGACAGCACGTAAGG
* * * * *
21478519 GGTGACCGGGCCGATCCCCGACTTGCGCA-TCTACCTCTCCGGCCAGCTGAGCGCCCGCACGCTC
66 GG-GA-CGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCATGCCC
* * *
21478583 GTTTCGTGGGTTGGTTTAGGCATACGGAGTTAATTCCATGTCTAAGC
129 ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGC
21478630 ATATGGAGTT
Statistics
Matches: 417, Mismatches: 69, Indels: 36
0.80 0.13 0.07
Matches are distributed among these distances:
315 26 0.06
316 3 0.01
317 89 0.21
318 23 0.06
319 1 0.00
320 3 0.01
322 1 0.00
323 2 0.00
326 3 0.01
327 1 0.00
328 2 0.00
329 258 0.62
330 5 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (316 bp):
TTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCAGCAGTAGGATCGACAGCACGTAAGG
GGGACGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCATGCCCAT
TTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCTAGCCGGACAGAGGGTTG
TGGCAGCAGGACCGACAGCACGCAGAAGGGGACCGGACCAATCACCGACTTACGCATTATGCCTC
TCCGGCCGGCTCAAAGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAA
Found at i:21478609 original size:158 final size:156
Alignment explanation
Indices: 21478181--21478630 Score: 444
Period size: 159 Copynumber: 2.8 Consensus size: 156
21478171 GGACCAGCTA
* * * * * *
21478181 CAGGATCGACAACACGTAAGGGGGATCGGGCCGATCCTCGACTTGCACATTCTGCCTCTCCGACC
1 CAGGATCGACAGCACGT-AGGGGGACCGGGCCGATCCCCGACTTGCGCA-TCTACCTCTCCGGCC
* * *
21478246 GGCTGAGTGCCCGCATGC-CTATTTCGTGGGTTGGCTGAGGCATA-GGAAGTTCATTCCATGTCT
64 GGCTGAGAGCCCGCACGCTC-ATTTCGTGGGTTGGCTTAGGCATACGGAA-TTCATTCCATGTCT
* * * **
21478309 AAGCCGTAGCCGGACAGAGGGTTGTGGCAG
127 AAGCAGTAGCCAGACAGAAGGTTGCAGCAG
* * * ** *
21478339 CAGGACCGGCAGCACGCAGAAGGGGACCGGATCGATCCCCGACTTACGCAT-TATGCCTCTCCGG
1 CAGGATCGACAGCACGTAG--GGGGACCGGGCCGATCCCCGACTTGCGCATCTA--CCTCTCCGG
* * * *
21478403 TCGGCTGAAAGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCA-GTC
62 CCGGCTGAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAATTCATT-CCATGTC
*
21478467 TAAG-A-TCAGACCAGACCGAAGGTTGCAGCAG
126 TAAGCAGT-AG-CCAGACAGAAGGTTGCAGCAG
* *
21478498 TAGGATCGACCGCACGTATGGGGTGACCGGGCCGATCCCCGACTTGCGCATCTACCTCTCCGGCC
1 CAGGATCGACAGCACGTA-GGGG-GACCGGGCCGATCCCCGACTTGCGCATCTACCTCTCCGGCC
* * * * * *
21478563 AGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTAATTCCATGTCTAA
64 GGCTGAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAATTCATTCCATGTCTAA
21478628 GCA
129 GCA
21478631 TATGGAGTTC
Statistics
Matches: 235, Mismatches: 43, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
157 7 0.03
158 82 0.35
159 135 0.57
160 11 0.05
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
CAGGATCGACAGCACGTAGGGGGACCGGGCCGATCCCCGACTTGCGCATCTACCTCTCCGGCCGG
CTGAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAATTCATTCCATGTCTAAGC
AGTAGCCAGACAGAAGGTTGCAGCAG
Found at i:21478638 original size:26 final size:26
Alignment explanation
Indices: 21478602--21478654 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21478592 GTTGGTTTAG
21478602 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
* *
21478628 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
21478654 G
1 G
21478655 ATAGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:21479013 original size:26 final size:26
Alignment explanation
Indices: 21478983--21479035 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21478973 GTTGACATAG
21478983 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
21479009 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21479035 G
1 G
21479036 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21479369 original size:158 final size:158
Alignment explanation
Indices: 21479009--21479511 Score: 430
Period size: 158 Copynumber: 3.2 Consensus size: 158
21478999 CCCAGTCTAA
* * * * * *
21479009 GCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGCGACAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGTAGGACCAGCA
* * * * * * * *
21479074 GCACGTAGGGGGGACCGGGCCAATCCCCAGCTTGCACATTCTGCCTCTCTGGTCGGCTGAGCGCC
66 GCACATAGAGGGGACCAGGCCAATCCCCAGCTTACACATTATGCCTCTCTGGTCAGCTCAGCACC
* *
21479139 CGTAAGCCCATTTCATGGGTTGGCTTAG
131 CGCAAGCCCATTTCATGGGTTGACTTAG
* * **
21479167 GCATAAGGAGTTCATT-CCATGTCTAAG-CCCCAGCC-AGACCGAGGGTTGTGGCAGT-GAGACC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGA-ACCGAGGGTTGTGGCAGTAG-GACC
* * * *
21479228 AGTAGCACATAGAGGGGACTAGGCCGATCCCCTA-CTTACACATTATGCCT-TTTCGG-CTAGCT
62 AGCAGCACATAGAGGGGACCAGGCCAATCCCC-AGCTTACACATTATGCCTCTCT-GGTC-AGCT
* * * *
21479290 CAGCACCCGCACGCTCATTTCGTGGGTTGACTTAT
124 CAGCACCCGCAAGCCCATTTCATGGGTTGACTTAG
* *
21479325 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGTGGCAGTAGGATC-GAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGTAGGACCAG-C
** * * * ** * * * * *
21479389 AGCACGCAGGGGGGACCGGGTCAATCCCTGGCTTGCGCATTCTGACTCTCCT-GTCAGCTAAGCA
65 AGCACATAGAGGGGACCAGGCCAATCCCCAGCTTACACATTATGCCTCT-CTGGTCAGCTCAGCA
* * * * *
21479453 CCCGCATGCTCATTCCGTGGGTTGGCTTAG
129 CCCGCAAGCCCATTTCATGGGTTGACTTAG
*
21479483 GCATACAGAGTTCATTCCCAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
21479512 TTTGAGCCAC
Statistics
Matches: 274, Mismatches: 55, Indels: 32
0.76 0.15 0.09
Matches are distributed among these distances:
157 11 0.04
158 252 0.92
159 10 0.04
160 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGTAGGACCAGCA
GCACATAGAGGGGACCAGGCCAATCCCCAGCTTACACATTATGCCTCTCTGGTCAGCTCAGCACC
CGCAAGCCCATTTCATGGGTTGACTTAG
Found at i:21486097 original size:26 final size:26
Alignment explanation
Indices: 21486061--21486113 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21486051 GTTAACTTAG
21486061 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* **
21486087 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21486113 G
1 G
21486114 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21486416 original size:159 final size:157
Alignment explanation
Indices: 21486087--21486430 Score: 345
Period size: 159 Copynumber: 2.2 Consensus size: 157
21486077 CCCAGTCTAA
* ** *
21486087 GCATATGGAGTTCATTTCC-AGTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCGACAGGATCAG
1 GCATACGGAGTTCA-TTCCTAGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCGACAGGATCAG
* * * *
21486150 CAGCACGCAGGGGGGACCGGGCCAATCCCCAACTTGCGCATTCTGCCTTTCCGGCCAGCTGAGCG
64 CAGCACACAAGGGGGACCGGGCCAATCCCCAACTTGCGCATTATGCCTTT-CGGCCAGCTCAGCG
* * * *
21486215 CCCACATGCCCATTTTGTGGGTTGGCTTAG
128 CCCACAGGCCCATTTCGTGGCTTGACTTAG
* * * *
21486245 GCATAGGGAGTTCATTCC-ATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCTACGGGATCGGC
1 GCATACGGAGTTCATTCCTA-GTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCGACAGGATCAGC
* * * *** *
21486309 AGCACACAAAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCCTT-GGTGGGCTCAGT
65 AGCACAC-AAGGGGGACCGGGCCAATCCCCAACTTGCGCATTATGCCT--TTCGGCCAGCTCAGC
** * *
21486373 GCCTGCAGGCTCGTTTCGTGGCTTGACTTAG
127 GCCCACAGGCCCATTTCGTGGCTTGACTTAG
*
21486404 GTATACGGAGTTCATTCCTAGTCTAAG
1 GCATACGGAGTTCATTCCTAGTCTAAG
21486431 ATTGGATCGG
Statistics
Matches: 152, Mismatches: 28, Indels: 11
0.80 0.15 0.06
Matches are distributed among these distances:
157 5 0.03
158 53 0.35
159 91 0.60
160 1 0.01
161 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCTAGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCGACAGGATCAGCA
GCACACAAGGGGGACCGGGCCAATCCCCAACTTGCGCATTATGCCTTTCGGCCAGCTCAGCGCCC
ACAGGCCCATTTCGTGGCTTGACTTAG
Found at i:21486568 original size:158 final size:156
Alignment explanation
Indices: 21486087--21486586 Score: 399
Period size: 158 Copynumber: 3.2 Consensus size: 156
21486077 CCCAGTCTAA
* ** * ** *
21486087 GCATATGGAGTTCATTTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCGACAGGATC-A
1 GCATACGGAGTTCA-TTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGCAGCTACAGGATCGA
* * * * * *
21486149 GCAGCACGCAGGGGGGACCGGGCCAATCCCCAACTTGCGCATTCTGCCTTTCCGGCCAGCTGAGC
64 -CAGCACACAGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGG-CTGCTGAGC
* * * *
21486214 GCCCACATGCCCATTTTGTGGGTTGGCTTAG
127 GCCCGCACGCTCATTTCGTGGGTT-GCTTAG
* ** * *
21486245 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCTACGGGATCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGCAGCTACAGGATCGACA
* * * *
21486310 GCACACAAAGGGGGA-TCGGGCCGATCCCC-GACTTGCGCATTATGCCTC-CTTGG-TGGGCTCA
66 GCACAC-AGGGGGGACT-GGGCCGATCCCCAG-CTTGCGCATTCTGCCTCTC-CGGCT--GCTGA
* * * * *
21486371 GTGCCTGCAGGCTCGTTTCGTGGCTTGACTTAG
125 GCGCCCGCACGCTCATTTCGTGGGTTG-CTTAG
* **** * *
21486404 GTATACGGAGTTCATTCC-TAGTCTAAG-ATTGGATCGGACTGAGGGTTGCAG-TAGCAGTATCG
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCCAG-TCGGACCGAGGGTTGCAGCTA-CAGGATCG
* *
21486466 ACAGCATACAGGGGGGACTGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCTGTCTGAGC
63 ACAGCACACAGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCTG-CTGAGC
*
21486531 GCCCGCACGCTCATTTCGTGGGTTCGCTTAT
127 GCCCGCACGCTCATTTCGTGGGTT-GCTTAG
*
21486562 GCATACGGAGTTCATTCAATGTCTA
1 GCATACGGAGTTCATTCCATGTCTA
21486587 TGCATACGAA
Statistics
Matches: 271, Mismatches: 51, Indels: 40
0.75 0.14 0.11
Matches are distributed among these distances:
157 6 0.02
158 143 0.53
159 122 0.45
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGCAGCTACAGGATCGACA
GCACACAGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCTGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGCTTAG
Found at i:21486824 original size:12 final size:12
Alignment explanation
Indices: 21486807--21486835 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
21486797 TGAGGGTTGT
21486807 GGCAGTAGGACC
1 GGCAGTAGGACC
21486819 GGCAGTAGGACC
1 GGCAGTAGGACC
21486831 GGCAG
1 GGCAG
21486836 CACGCAGAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.45, T:0.07
Consensus pattern (12 bp):
GGCAGTAGGACC
Found at i:21487314 original size:26 final size:26
Alignment explanation
Indices: 21487285--21487336 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21487275 GTAGGCTTAG
21487285 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21487311 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21487337 TATTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21488038 original size:26 final size:26
Alignment explanation
Indices: 21488008--21488060 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21487998 GCTGACTTAG
*
21488008 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACCGAGTTCATTCCC-AGTCTAA
21488034 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
21488060 G
1 G
21488061 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:21488388 original size:183 final size:183
Alignment explanation
Indices: 21487935--21488757 Score: 564
Period size: 184 Copynumber: 4.5 Consensus size: 183
21487925 ACCTCCCGTT
* * * ** * *
21487935 CGATCCTCGGTTTGCGTATCCTGCCCCTTTAGTCGGCTGAGCCCCCGCACGCTCGTTTCATGGGC
1 CGATCCTCGGTTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCAC-CTCGTTTCATGGGT
* * *
21488000 TGACTTAGGCATACGGAGTTCA-TCCCTAGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGATC
65 TGGCTTAGGCATACAGAGTTCATTCCAT-GTCTAAGCATACCGAGTTCATTCCCAGTCTAAGATC
* * ** * * * *
21488064 AGACTAGACCAAGGGTTGCGGCAGTAGGATCGGTAGCATGCATGGGGGATCGGGT
129 AGACCAGACCAAGGGTTACGGCAGTAGGATCGGTAGCACACAAGGGGGACCGAGC
* * * * * * * *
21488119 CGATCCTCGGTTTGCACATTTTACCTCTTCGGTCGGTTGAGCGCCCGTACGC-CGGCTTCGTGGG
1 CGATCCTCGGTTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCAC-CTC-GTTTCATGGG
** **
21488183 TTGGCTTAGGCATAGTGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
64 TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGATC
* * *
21488248 AGACCGGACCGAGGGTTACGGCAG-CGGATCGGTAGCACACAAGGGGGACCGAGC
129 AGACCAGACCAAGGGTTACGGCAGTAGGATCGGTAGCACACAAGGGGGACCGAGC
* * * *
21488302 CGATCCTCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACATTCATTTTATGGGT
1 CGATCCTCGGTTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCAC-CTCGTTTCATGGGT
* * * * ** *
21488367 TGGCTTAGGTATACAGAGTTCATGCCATGTCTAAGCCACAACCG-G---A--CCGAGGGT-TG-T
65 TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG-CA-TACCGAGTTCATTCCCAGTCTAAGAT
* * * * ** * *
21488424 --G-GCTG--C-A-GG--AGCGGCAGCAAGATCGGTAGCATGCAGAGGGGGATCGGGC
128 CAGACCAGACCAAGGGTTA-CGGCAGTAGGATCGGTAGCACACA-AGGGGGACCGAGC
* * * * * * *
21488473 TGATCCCCGGCTTGCGCATTATGCCTC-TCGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGT
1 CGATCCTCGGTTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCAC-CTCGTTTCATGGGT
* * * * * ** *
21488537 TGACTTAGCCATACGGAGTTCATCCTCA-ATCTAAGCATAAGGAGTTCATTCCTAGTCTAAGATC
65 TGGCTTAGGCATACAGAGTTCATTC-CATGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGATC
* * ** * * * *
21488601 AGATCGGACTGAGGGTTACGGGCAATAGGATCGGGAGCACGCAAGGGGGTCC-AGGC
129 AGACCAGACCAAGGGTTAC-GGCAGTAGGATCGGTAGCACACAAGGGGGACCGA-GC
* * * * * *
21488657 CTG-TCC-CTGGCTTGCGTATTCTGCCTCTCCGATCGGCTGAGCACCCGCACACCCGTTTCGTGG
1 C-GATCCTC-GGTTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCAC-CTCGTTTCATGG
* *
21488720 TTTGGCTTAGGCATA-GGAAGTTCATTCCATGTCTAAGC
63 GTTGGCTTAGGCATACAG-AGTTCATTCCATGTCTAAGC
21488758 CCTAGCCAGA
Statistics
Matches: 493, Mismatches: 113, Indels: 65
0.73 0.17 0.10
Matches are distributed among these distances:
168 3 0.01
169 9 0.02
170 71 0.14
171 38 0.08
172 2 0.00
174 7 0.01
175 2 0.00
176 1 0.00
177 1 0.00
178 2 0.00
179 7 0.01
181 1 0.00
182 1 0.00
183 108 0.22
184 160 0.32
185 80 0.16
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (183 bp):
CGATCCTCGGTTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACCTCGTTTCATGGGTT
GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGATCAG
ACCAGACCAAGGGTTACGGCAGTAGGATCGGTAGCACACAAGGGGGACCGAGC
Found at i:21488572 original size:170 final size:169
Alignment explanation
Indices: 21488266--21488572 Score: 384
Period size: 170 Copynumber: 1.8 Consensus size: 169
21488256 CCGAGGGTTA
* * *
21488266 CGGCAGCGGATCGGTAGCACACAAGGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTT
1 CGGCAGCAGATCGGTAGCACACAAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTT
* * * * ** * *
21488331 CGGTCGGCTGAGCACCCGCACATTCATTTTATGGGTTGGCTTAGGTATACAGAGTTCATGCCATG
66 CGGCCGGCTGAGCACCCGCACACTCATTTCATGGGTTGACTTAGCCATACAGAGTTCATCCCATA
21488396 TCTAAGCCACAACCGGACCGAGGGTTGTGGCTGCAGGAG
131 TCTAAGCCACAACCGGACCGAGGGTTGTGGCTGCAGGAG
** * * *
21488435 CGGCAGCAAGATCGGTAGCATGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTC
1 CGGCAGC-AGATCGGTAGCACACA-AGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTC
* * * * *
21488500 -TCGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGCCATACGGAGTTCATCCTC
64 TTCGGCCGGCTGAGCACCCGCACACTCATTTCATGGGTTGACTTAGCCATACAGAGTTCATCC-C
21488564 A-ATCTAAGC
128 ATATCTAAGC
21488573 ATAAGGAGTT
Statistics
Matches: 114, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
169 7 0.06
170 70 0.61
171 37 0.32
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (169 bp):
CGGCAGCAGATCGGTAGCACACAAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTT
CGGCCGGCTGAGCACCCGCACACTCATTTCATGGGTTGACTTAGCCATACAGAGTTCATCCCATA
TCTAAGCCACAACCGGACCGAGGGTTGTGGCTGCAGGAG
Found at i:21488780 original size:355 final size:353
Alignment explanation
Indices: 21488081--21488781 Score: 873
Period size: 355 Copynumber: 2.0 Consensus size: 353
21488071 ACCAAGGGTT
* * * * * *
21488081 GCGGCAGTAGGATCGGTAGCATGCATGGGGGATCGGGTCGATCCTCGGTTTGCACATTTTACCTC
1 GCGGCAGCAAGATCGGTAGCATGCAAGGGGGATCGGGTCGATCCCCGGCTTGCACATTATACCTC
* * * * * *
21488146 TTCGGTCGGTTGAGCGCCCGTACGCCGGCTTCGTGGGTTGGCTTAGGCATAGTGAGTTCATTCCA
66 TTCGGCCGGTTGAGCGCCCGCACGCCGGCTTCATGGGTTGACTTAGCCATAGTGAGTTCATCCCA
* * *
21488211 TGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCGGA
131 TATCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGAGGA
* * *
21488276 TCGGTAGCACACAAGGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTG
196 TCGGGAGCACACAAGGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTG
** * *
21488341 AGCACCCGCACATTCATTTTATGGGTTGGCTTAGGTATACAGAGTTCATGCCATGTCTAAGCCAC
261 AGCACCCGCACACCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATGCCATGTCTAAGCCAC
*
21488406 AACCGGACCGAGGGTTGTGGCTGCAGGA
326 AACCAGACCGAGGGTTGTGGCTGCAGGA
* *
21488434 GCGGCAGCAAGATCGGTAGCATGCAGAGGGGGATCGGG-CTGATCCCCGGCTTGCGCATTATGCC
1 GCGGCAGCAAGATCGGTAGCATGCA-AGGGGGATCGGGTC-GATCCCCGGCTTGCACATTATACC
*
21488498 TC-TCGGCCGGTTGAGCGCCCGCACGCTC-GTTTCATGGGTTGACTTAGCCATACG-GAGTTCAT
64 TCTTCGGCCGGTTGAGCGCCCGCACGC-CGGCTTCATGGGTTGACTTAGCCATA-GTGAGTTCAT
* * *
21488560 CCTCA-ATCTAAGCATAAGGAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTACGGGC
127 CC-CATATCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTAC-GGC
* * * *
21488624 AATAGGATCGGGAGCACGCAAGGGGGTCC-AGGCCTG-TCC-CTGGCTTGCGTATTCTGCCTCTC
190 -AGAGGATCGGGAGCACACAAGGGGGACCGA-GCC-GATCCTC-GGCTTGCGCATTCTGCCTCTC
* * * * *
21488686 CGATCGGCTGAGCACCCGCACACCCGTTTCGTGGTTTGGCTTAGGCATA-GGAAGTTCATTCCAT
251 CGATCGGCTGAGCACCCGCACACCCATTTCATGGGTTGGCTTAGGCATACAG-AGTTCATGCCAT
*
21488750 GTCTAAGCC-CTAGCCAGACCGAGGGTTGTGGC
315 GTCTAAGCCAC-AACCAGACCGAGGGTTGTGGC
21488782 AACGGGATTT
Statistics
Matches: 297, Mismatches: 39, Indels: 22
0.83 0.11 0.06
Matches are distributed among these distances:
353 125 0.42
354 43 0.14
355 128 0.43
356 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (353 bp):
GCGGCAGCAAGATCGGTAGCATGCAAGGGGGATCGGGTCGATCCCCGGCTTGCACATTATACCTC
TTCGGCCGGTTGAGCGCCCGCACGCCGGCTTCATGGGTTGACTTAGCCATAGTGAGTTCATCCCA
TATCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGAGGA
TCGGGAGCACACAAGGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTG
AGCACCCGCACACCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATGCCATGTCTAAGCCAC
AACCAGACCGAGGGTTGTGGCTGCAGGA
Found at i:21489051 original size:158 final size:158
Alignment explanation
Indices: 21488660--21489073 Score: 371
Period size: 158 Copynumber: 2.6 Consensus size: 158
21488650 TCCAGGCCTG
* * * * *
21488660 TCCCTGGCTTGCGTATTCTGCCTCTCCGATCGGCTGAGCACCCGCACACCCGTTTCGTGGTTTGG
1 TCCCTGGCTTGCGCATTCTGCCTCTCCG-TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGG
* * * * * *
21488725 CTTAGGCATAGGAAGTTCATT-CCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAACGGGA
65 CTTAGGCATACGAAGTTCATTCCCATGGCTAAGCCCGAGCCAGAACAAGGGTTGTGGCAACAGGA
* *
21488789 TTTGTAACACGCAGAGGGGGACCGAGCCA
130 TTCGTAACACGCAGAGGGGGACAGAGCCA
* * * * * * * * *
21488818 TCCCCGACTTGCACATTATGCCTCTTCGGCCGGCTCAAG-GCCTGCACGCTCGTTTTGTGGGTTG
1 TCCCTGGCTTGCGCATTCTGCCTC-TCCGTCGGCT-GAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * ** *
21488882 ACTT-GTTCATACGAAGTTTATTCCCA-GGCTAAGATCG-GACCAGAACAAGGGTTGTGGCAGCA
64 GCTTAG-GCATACGAAGTTCATTCCCATGGCTAAGCCCGAG-CCAGAACAAGGGTTGTGGCAACA
*
21488944 GGA-TCG-ACAGCACGCAG-GGGGGATTAG-GCCGA
127 GGATTCGTA-A-CACGCAGAGGGGGA-CAGAGCC-A
* *
21488976 TCCCTGGCTTGCGCATTCTGCCTCTCCAGTTGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGG
1 TCCCTGGCTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGG
* *
21489041 CTTAGGCATACGGAGTTCATT-CCATGTCTAAGC
65 CTTAGGCATACGAAGTTCATTCCCATGGCTAAGC
21489074 ATACGGAGTT
Statistics
Matches: 197, Mismatches: 46, Indels: 26
0.73 0.17 0.10
Matches are distributed among these distances:
156 1 0.01
157 21 0.11
158 166 0.84
159 9 0.05
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.25
Consensus pattern (158 bp):
TCCCTGGCTTGCGCATTCTGCCTCTCCGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGC
TTAGGCATACGAAGTTCATTCCCATGGCTAAGCCCGAGCCAGAACAAGGGTTGTGGCAACAGGAT
TCGTAACACGCAGAGGGGGACAGAGCCA
Done.