Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 206 of 402
Found at i:21489082 original size:26 final size:26
Alignment explanation
Indices: 21489046--21489098 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21489036 GTTGGCTTAG
21489046 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21489072 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21489098 G
1 G
21489099 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21489790 original size:158 final size:159
Alignment explanation
Indices: 21489449--21489951 Score: 362
Period size: 158 Copynumber: 3.2 Consensus size: 159
21489439 CCCAATCTAA
* * * * * *
21489449 GCATATGGAGTTCATTCCCAGTCTAAG-ATC-GATCCAGACCGAGGGTTGTGGCAGCAGGATCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGCACCAGA-CCGGACCGAGGGTTATAGCAGCAGGATCGA
* * ** * * * * * * * * *
21489512 TAGC-GTGCATTGGGGATCGGGACGATCCACGACTTGCGCATTCTGCCTCTCTGGCC-GACTGAG
65 CAGCAG-ACAGGGGGGACCAGGCCGAACCCCGACTTACGCATTATGCCCCTCCGGCCTG-CTGAG
*** * * *
21489575 TGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 CATCAGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * * * * *
21489607 TCATAGGGAATTCATT-CCATATCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGCGGGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGCACCAGACCGGACCGAGGGTTATAGCAGCAGGATCGA
*
21489670 CAGCAGACAGAGGGGGACCAGGCC-AACCCCGACTTGCGCATTATGCCCCTCC-GCCTGGCTCAG
65 CAGCAGACAG-GGGGGACCAGGCCGAACCCCGACTTACGCATTATGCCCCTCCGGCCT-GCT--G
* *
21489733 TGC-TCAG-ACGCTCATTTCGTGGGTTGACTTAG
126 AGCATCAGCACGCTCATTTCGTGGGTTGGCTTAG
*** * * *
21489765 GCATACGGAGTTCATTCCCAGTCTAAG-ATTGGACCGGACCGAGGGTTATAGTAGTAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCACCAGACCGGACCGAGGGTTATAGCAGCAGGATCGAC
* * * * * * *
21489829 AGCATACAGGGGGGACTAGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGCCTGCTGAGCAT
66 AGCAGACAGGGGGGACCAGGCCGAACCCCGACTTACGCATTATGCCCCTCCGGCCTGCTGAGCAT
* *
21489894 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
131 CAGCACGCTCATTTCGTGGGTTGGCTTAG
* *
21489923 GCATATGGAGTTCATTCCCTGTCTAAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGCA
21489952 TACAGAGTTC
Statistics
Matches: 271, Mismatches: 58, Indels: 31
0.75 0.16 0.09
Matches are distributed among these distances:
156 3 0.01
157 22 0.08
158 221 0.82
159 22 0.08
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCACCAGACCGGACCGAGGGTTATAGCAGCAGGATCGAC
AGCAGACAGGGGGGACCAGGCCGAACCCCGACTTACGCATTATGCCCCTCCGGCCTGCTGAGCAT
CAGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:21491667 original size:26 final size:26
Alignment explanation
Indices: 21491637--21491689 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21491627 GTTGGCTTAG
21491637 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
* *
21491663 GCATATGGGGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
21491689 G
1 G
21491690 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:21493428 original size:26 final size:26
Alignment explanation
Indices: 21493398--21493450 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21493388 GTTGACTTAG
*
21493398 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
21493424 GCATACATAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21493450 G
1 G
21493451 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21493733 original size:159 final size:160
Alignment explanation
Indices: 21493525--21493928 Score: 436
Period size: 159 Copynumber: 2.5 Consensus size: 160
21493515 CCGGCTTACG
* * * * * * *
21493525 CATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGG
1 CATTCTGCCTCTTCGGCCGGCTGAACGACCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
* * *** * * * ** *
21493590 AGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGATGGGCAGCATGCAG
66 AGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTACAGCAGCAGGATCGACAGCACACAC
*
21493655 A-GGGGGATCAGGCCGATCCCCGACCTGCA
131 AGGGGGGACCAGGCCGATCCCCGACCTGCA
* * * * * *
21493684 CATTATGCCTCTTCGGCCGGCTCAACGACCGCACGCTCGTTTCGTGGGTTGACTTATGCGTACGG
1 CATTCTGCCTCTTCGGCCGGCTGAACGACCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
** * * *
21493749 AGTTCATTCCCA-GTCTAAGATCGAACCGTATCGAGGGTTACAGCAGCAGGATCGACAGCACACA
66 AGTTCATT-CCATGTCTAAGCCCCAACCGGACCGAGGGTTACAGCAGCAGGATCGACAGCACACA
* * *
21493813 CAGGGGGGACCGGGCCGATCCCCGACTTGCG
130 CAGGGGGGACCAGGCCGATCCCCGACCTGCA
* * * *
21493844 CATGCTGCCTCTGT-GGCCAGCTGAACGACCACATGCTCGTTTCATGGGTTGGCTTAGGCATACG
1 CATTCTGCCTCT-TCGGCCGGCTGAACGACCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
21493908 GAGTTCATTCCATGTCTAAGC
65 GAGTTCATTCCATGTCTAAGC
21493929 ATACGGTGTT
Statistics
Matches: 197, Mismatches: 44, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
159 101 0.51
160 95 0.48
161 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (160 bp):
CATTCTGCCTCTTCGGCCGGCTGAACGACCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTACAGCAGCAGGATCGACAGCACACAC
AGGGGGGACCAGGCCGATCCCCGACCTGCA
Found at i:21493931 original size:26 final size:26
Alignment explanation
Indices: 21493901--21493953 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21493891 GTTGGCTTAG
21493901 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
21493927 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21493953 G
1 G
21493954 ATTTTGACTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21494658 original size:26 final size:26
Alignment explanation
Indices: 21494622--21494674 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21494612 GTTGACTTAG
21494622 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21494648 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21494674 G
1 G
21494675 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21494843 original size:26 final size:26
Alignment explanation
Indices: 21494806--21494858 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21494796 GATGACTTAG
21494806 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
21494832 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21494858 G
1 G
21494859 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21494869 original size:184 final size:183
Alignment explanation
Indices: 21494556--21495017 Score: 592
Period size: 184 Copynumber: 2.5 Consensus size: 183
21494546 GTTCGATCCT
* * * *
21494556 CGGCTTGCATA-TCTTGCCTCTTTGGTCGGCCGAGCACCCGCACGCTCATTTCGTGGGTTGACTT
1 CGGCTTGCACATTC-TGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT
*
21494620 AGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAG
65 AGGCATAC-GAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
** * * * **
21494685 ATTGAGGGTTGCGGTAGTAGGATCGACAGCACGTAGGGGGGACC-GGATTG-ATCCC
129 ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCAGG-CCGCA-CCC
* * *
21494740 CGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGATGACTTA
1 CGGCTTGCACATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTA
* *
21494805 GGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCGGACCAGA
66 GGCATACG-AGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
*
21494870 CCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGGACCAGGCCGCACCC
130 CCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGCACCC
* * * * * *
21494924 TGGCTTGCACATTTTGCCTCTTCGATCGGGTGAGCACTCGCACG-TCCGTTTCATGGGTTGACTT
1 CGGCTTGCACATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCT-CGTTTCGTGGGTTGACTT
*
21494988 AGGCATAACGAGTTCAT-TCCATGTCTAAGC
65 AGGCAT-ACGAGTTCATCCCCA-GTCTAAGC
21495018 CCCAGCCGGA
Statistics
Matches: 243, Mismatches: 28, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
183 5 0.02
184 230 0.95
185 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (183 bp):
CGGCTTGCACATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTA
GGCATACGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGCACCC
Found at i:21495301 original size:158 final size:157
Alignment explanation
Indices: 21494832--21495334 Score: 478
Period size: 158 Copynumber: 3.2 Consensus size: 157
21494822 CCCAGTCTAA
* * * * *
21494832 GCATACGGAGTTTATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATTGAC
* * * * * * * *
21494896 AGCACGCAGGGGGGACCAGGCCGCA-CCCTGGCTTGCACATTTTGCCTCTTCGATCGGGTGAGCA
65 AGCACACAGGGGGGACCGGGCC-AATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTGAGCG
*
21494960 CTCGCACGTCCGTTTCATGGGTTGACTTAG
129 CCCGCACGT-CGTTTCATGGGTTGACTTAG
** * * *
21494990 GCATAAC-GAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGCGAGGACTG
1 GCAT-ACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGC-AGGATTG
* * * * * *
21495053 GCAGCACACAGAGGGAGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCG-TCTGGCTCA
63 ACAGCACACAG-GGGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGATC-GGCTGA
* *
21495117 GCGCCCGCACGTTTGTTTCATGGGTTGACTTAT
126 GCGCCCGCACG-TCGTTTCATGGGTTGACTTAG
* * ** *
21495150 GCATACGGAGTTCATTCCCA-GTCTAAGATTAGACTGGACCGAGGGTTGCAACAGCAGGATTAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATTGAC
* * * * * * *
21495214 AGCACCCAGGGGGGACCGGGCCAATCCCCAGTTTGCGCATTCTGCCTCTCCGATCGACTGAGTGC
65 AGCACACAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTGAGCGC
* **
21495279 CCGCACGCTCGTTTCGTGGGTTGGTTTAG
130 CCGCACG-TCGTTTCATGGGTTGACTTAG
*
21495308 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
21495335 CCCCAGTCGG
Statistics
Matches: 276, Mismatches: 56, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
157 6 0.02
158 125 0.45
159 40 0.14
160 101 0.37
161 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATTGACA
GCACACAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTGAGCGCC
CGCACGTCGTTTCATGGGTTGACTTAG
Found at i:21495702 original size:159 final size:158
Alignment explanation
Indices: 21495463--21495798 Score: 410
Period size: 159 Copynumber: 2.1 Consensus size: 158
21495453 CAAGGGTTGC
* * * *
21495463 GACAGCAAGATCGACAGCACGTAGAGGGGATCGGGCTGATCCCCGGCTTGCTCATTCTACGTCTT
1 GACAGCAAGATCGACAGCACATAGAGGGGATCGGGCCGATCCCCGGCTTGCTCATTCTACCTCTC
* * * *
21495528 CGGCTGTATGAGCGCCCGCACGC-CTGTTTCATCGGTTGCCTTAGGCATA-GGTAGTTCATTCCA
66 CGACCGTATGAGCGCCCACACGCTC-GTTTCATCGGTTGCCTTAGGCAGACGG-AGTTCATTCCA
*
21495591 TGTCTAAGCTCCAGTCGGAACGAGGGATGT
129 TGTCTAAGCCCCAGTCGGAACGAGGGATGT
* *
21495621 GACAGCAAGATCGATAGCACATAGGGGGGGATCGGGCCGATCCCCGGCTTG-TGCATTCTACCTC
1 GACAGCAAGATCGACAGCACATA-GAGGGGATCGGGCCGATCCCCGGCTTGCT-CATTCTACCTC
* * *
21495685 TCCGACCG-ACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCAGACGGAGTTCATTCC
64 TCCGACCGTA-TGAGCGCCCACACGCTCGTTTCATCGGTTGCCTTAGGCAGACGGAGTTCATTCC
* * * * *
21495749 ATGTCTAAGCCCCAGCCAGACCGAGTGTTGT
128 ATGTCTAAGCCCCAGTCGGAACGAGGGATGT
* *
21495780 GGCAGCAAGACCGACAGCA
1 GACAGCAAGATCGACAGCA
21495799 GGATCGGCAG
Statistics
Matches: 151, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
158 23 0.15
159 125 0.83
160 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GACAGCAAGATCGACAGCACATAGAGGGGATCGGGCCGATCCCCGGCTTGCTCATTCTACCTCTC
CGACCGTATGAGCGCCCACACGCTCGTTTCATCGGTTGCCTTAGGCAGACGGAGTTCATTCCATG
TCTAAGCCCCAGTCGGAACGAGGGATGT
Found at i:21495938 original size:26 final size:26
Alignment explanation
Indices: 21495902--21495954 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21495892 GTTGACTTAG
21495902 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21495928 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21495954 G
1 G
21495955 ATCAAACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21496122 original size:26 final size:26
Alignment explanation
Indices: 21496086--21496143 Score: 116
Period size: 26 Copynumber: 2.2 Consensus size: 26
21496076 GTTGGCTCAG
21496086 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
21496112 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
21496138 GCATAC
1 GCATAC
21496144 AGATTGCATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:21496153 original size:26 final size:26
Alignment explanation
Indices: 21496086--21496155 Score: 106
Period size: 26 Copynumber: 2.7 Consensus size: 26
21496076 GTTGGCTCAG
*
21496086 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
21496112 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
21496138 GCATACAGA-TTGCATTCC
1 GCATACAGAGTT-CATTCC
21496156 CAATCTAAGA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
25 2 0.05
26 40 0.95
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:21496162 original size:26 final size:26
Alignment explanation
Indices: 21496086--21496164 Score: 90
Period size: 26 Copynumber: 3.0 Consensus size: 26
21496076 GTTGGCTCAG
* *
21496086 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
* *
21496112 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
21496138 GCATACAGA-TTGCATTCCCA-ATCTAA
1 GCATACAGAGTT-CATT-CCATATCTAA
21496164 G
1 G
21496165 ATTTTGAGCC
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.04
26 44 0.90
27 3 0.06
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:21496831 original size:26 final size:26
Alignment explanation
Indices: 21496795--21496847 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21496785 GTTGACTTAG
*
21496795 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
21496821 GCATACAGAGTTCATTCTCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
21496847 G
1 G
21496848 ATCAGAATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:21497008 original size:26 final size:26
Alignment explanation
Indices: 21496978--21497031 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
21496968 GGTCGACTTC
*
21496978 AGCATATAGAGTTCATT-CCATGTCTA
1 AGCATACAGAGTTCATTCCCA-GTCTA
*
21497004 AGCATGCAGAGTTCATTCCCAGTCTA
1 AGCATACAGAGTTCATTCCCAGTCTA
21497030 AG
1 AG
21497032 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (26 bp):
AGCATACAGAGTTCATTCCCAGTCTA
Found at i:21497374 original size:26 final size:26
Alignment explanation
Indices: 21497345--21497397 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21497335 GTTTACTTAG
21497345 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
21497371 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21497397 G
1 G
21497398 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21497559 original size:355 final size:359
Alignment explanation
Indices: 21497116--21497947 Score: 928
Period size: 368 Copynumber: 2.3 Consensus size: 359
21497106 CTCGATTTAT
* * * * * ** * * *
21497116 GCATTCTACCTCTCCGATCGGTTAAACGCCTACACGCTCGTTTCATGGGTTGGCTTAGGCATACA
1 GCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTGATGGGTTGGCTTAGGCATACG
* * * *
21497181 GAGTTCATTCCATGTCTAAGCCCCAACCAGACCCAGGGTTGTGGTAGCAGGACCAGCAG-TGAGA
66 GAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGAAGCAGGACCAGCAGCTG-GA
* * * * *
21497245 TCAACAGCACGCAGAG-GGGGACCGAGCTGATCCTCGGCTTACGCATTATGCCT-T-TCCGG-TC
130 TCAACAGCACACAGAGAGGGGACAG-GCTGATCCCCGACTTACGCATTATGCCTCTCGCCGGTTC
* * * *
21497306 GGT-TGAGCGCCCGTACGCTTGTT-TCGTGGGTTTACTTAGGCATACGAAGTTCATCCCCAGTCT
194 GGTCTAAGCGCCCGCACGCTCGTTCT-GTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCT
* * * ** * *
21497369 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-CAGAGGGTTGCGGTAGCAGGATTG
258 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATC-GAGGGTTACGACAGCAAGATCG
* * *
21497433 ACAGTACGCAGAGGGGACCTG-GCTGATCCTCAACTTAC
322 ACAGCACGCAGAGGGGA-CGGAGCTGATCCCCAACTTAC
* ** *
21497471 GCATTCTGCCTCTCCGATCGGCTGAGCGTTCGCACGCTCATTTGATGGGTTGGATTAGGCATACG
1 GCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTGATGGGTTGGCTTAGGCATACG
* **
21497536 GAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTAGAAGCAGGACTGGCAGCTGGAT
66 GAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGAAGCAGGACCAGCAGCTGGAT
* * *
21497601 CGATAGCACACAGAGAGGGGTCAGGCTGATCCCCGACTTACGCATTATGCCTCTCCAGCCGGCCT
131 CAACAGCACACAGAGAGGGGACAGGCTGATCCCCGACTTACGCATTATGCCTCT-C-GCCGG---
* * *
21497666 TTTCGGTCGACTAAGCGTCCGCACGCTCGTTCTGTGTGTTGACTTAGGCATACGGAGTTCATCCC
191 -TTCGGT---CTAAGCGCCCGCACGCTCGTTCTGTGGGTTGACTTAGGCATACGAAGTTCATCCC
* *
21497731 CAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTACGACAGTAA
252 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTACGACAGCAA
** * ** * ** *
21497796 GATCGGTAGCATGTTGGGGGGACGGAGCTGATCCCCGGCTTGC
317 GATCGACAGCACGCAGAGGGGACGGAGCTGATCCCCAACTTAC
* *
21497839 GCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCATTTTG-TGGGTTGGCTTAGGCATAG
1 GCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCA-TTTGATGGGTTGGCTTAGGCATAC
21497903 GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGG
65 GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGG
21497948 CAGTGGGACC
Statistics
Matches: 396, Mismatches: 62, Indels: 25
0.82 0.13 0.05
Matches are distributed among these distances:
355 146 0.37
356 9 0.02
359 4 0.01
364 5 0.01
367 2 0.01
368 224 0.57
369 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (359 bp):
GCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTGATGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGAAGCAGGACCAGCAGCTGGAT
CAACAGCACACAGAGAGGGGACAGGCTGATCCCCGACTTACGCATTATGCCTCTCGCCGGTTCGG
TCTAAGCGCCCGCACGCTCGTTCTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTACGACAGCAAGATCGACAG
CACGCAGAGGGGACGGAGCTGATCCCCAACTTAC
Found at i:21497742 original size:26 final size:26
Alignment explanation
Indices: 21497713--21497765 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21497703 GTTGACTTAG
21497713 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21497739 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21497765 G
1 G
21497766 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21498972 original size:26 final size:26
Alignment explanation
Indices: 21498936--21498988 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21498926 GTTAACTTAG
21498936 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
21498962 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21498988 G
1 G
21498989 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21499447 original size:26 final size:26
Alignment explanation
Indices: 21499417--21499469 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21499407 GTTGGCTTAG
21499417 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
21499443 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
21499469 G
1 G
21499470 ATTTTGAGCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:21500465 original size:159 final size:154
Alignment explanation
Indices: 21500248--21500662 Score: 415
Period size: 155 Copynumber: 2.6 Consensus size: 154
21500238 GGGACCGGGT
* * * * * *
21500248 CGATCCCCGGTTTGCGCATTCTGCCTCT-CTGACGGACTGAGCGCCTGCACCCCCGTTTCAAGGG
1 CGATCCCTGGTTTGCGCATTCTGCCTCTCCGGAC-GACTGAGCGCCCGCACGCTCGTTTCATGGG
* * * *
21500312 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGC
65 TTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAG-ACCAGACCAAACCGA-GG--GTGACAG-
* *
21500376 GA-GACCGGCAGCACGTAGAGGGGGATCGAGC
124 GAGGACCGACAGCACGAAG-GGGGGATCGAGC
* * * * *
21500407 TGATCCCTGGCTTGGGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCCTGGTTTGCGCATTCTGCCTCTCCGGACGACTGAGCGCCCGCACGCTCGTTTCATGGGT
* * * * * * *
21500472 TGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAGGGTGACAGTAGGAT
66 TGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGACCAGACCAAACCGAGGGTGACAGGAGGAC
* *
21500537 CGATAGCCCGAAGGGGGGATCGAGC
130 CGACAGCACGAAGGGGGGATCGAGC
* * * * *
21500562 CGATCCCTGGTTTGTGCATTCTGCCTCTCC-GACCGGCTGAGTGCCCGCGCGGTCGTTTCATGGG
1 CGATCCCTGGTTTGCGCATTCTGCCTCTCCGGA-CGACTGAGCGCCCGCACGCTCGTTTCATGGG
*
21500626 TTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGA
65 TTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGA
21500663 GTTTGAGCCC
Statistics
Matches: 213, Mismatches: 38, Indels: 14
0.80 0.14 0.05
Matches are distributed among these distances:
154 1 0.00
155 100 0.47
156 17 0.08
158 4 0.02
159 85 0.40
160 6 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (154 bp):
CGATCCCTGGTTTGCGCATTCTGCCTCTCCGGACGACTGAGCGCCCGCACGCTCGTTTCATGGGT
TGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGACCAGACCAAACCGAGGGTGACAGGAGGACC
GACAGCACGAAGGGGGGATCGAGC
Found at i:21502539 original size:26 final size:26
Alignment explanation
Indices: 21502510--21502562 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21502500 GTTGACTTAG
21502510 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
21502536 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21502562 G
1 G
21502563 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21502889 original size:159 final size:158
Alignment explanation
Indices: 21502543--21502891 Score: 339
Period size: 159 Copynumber: 2.2 Consensus size: 158
21502533 TAAGCATACG
* * * **
21502543 GAGTTCATTCCCAGTCTAAGATCAGACCGAATTGAGGGTTGCGGCAGTAAGATCGGTAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAAGGTTGCGGCAGTAAGACCGACAGCACGCA
** * * * * * *
21502608 GGAGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCTGACCGACTGAGCACCCGTATGC
66 GGAGGGACCGGACCGATCCCTAACTTGCGCATTATGCCTCTCCGACCAACTCAACACCCGTACGC
* * * * *
21502673 CCGTTTCTTGGGTTGGCTTAGGCATAGG
131 CCATTTCGTGAGTTGACTTAGGCATAGA
* ** *
21502701 GAGTTCATT-CCATGTTTAAGCCCCA-ACCGAACTGAAGGTTGTGGCAGTAAGACCGACAGCACG
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACTGAAGGTTGCGGCAGTAAGACCGACAGCACG
* * * * * **
21502764 CA-GAGGCGGATCGGATCGAT-CTTCAACTTGCGTATTATGCCTCTCCGATCAACTCAATGCCCG
64 CAGGA-G-GGACCGGACCGATCCCT-AACTTGCGCATTATGCCTCTCCGACCAACTCAACACCCG
*
21502827 TACGCTCATTTCGTGAGTTGACTTAGGCAT-GCA
126 TACGCCCATTTCGTGAGTTGACTTAGGCATAG-A
21502860 GAGTTCATTCCCAGTCTAAGATCAGACCGAAC
1 GAGTTCATTCCCAGTCTAAGATCAGACCGAAC
21502892 CAAGGGTTGC
Statistics
Matches: 150, Mismatches: 33, Indels: 15
0.76 0.17 0.08
Matches are distributed among these distances:
157 5 0.03
158 55 0.37
159 87 0.58
160 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAAGGTTGCGGCAGTAAGACCGACAGCACGCA
GGAGGGACCGGACCGATCCCTAACTTGCGCATTATGCCTCTCCGACCAACTCAACACCCGTACGC
CCATTTCGTGAGTTGACTTAGGCATAGA
Found at i:21503408 original size:26 final size:26
Alignment explanation
Indices: 21503378--21503430 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21503368 GTTGACTTAG
*
21503378 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGGTCATCCCCAGTCTAA
*
21503404 GCATACGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATCCCCAGTCTAA
21503430 G
1 G
21503431 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGGTCATCCCCAGTCTAA
Found at i:21503431 original size:367 final size:355
Alignment explanation
Indices: 21502905--21503947 Score: 992
Period size: 355 Copynumber: 2.9 Consensus size: 355
21502895 GGGTTGCAGT
* * * * * *
21502905 AGCAGGATCGATAGCACGTAG-GGGGGATCGGGTCGATCCTCGGCTTATGCATTCTGCCTCTCCG
1 AGCAGGATCGATAGCACGCAGAGGGGGATCGAGTTGATCCTCGACTTGTGCATTATGCCTCTCCG
* * * * * *
21502969 ATCGGCTGAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATATGGAATTCAAT--ACATT
66 GTCGGCTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTC-ATCCCCA-G
* *
21503032 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGTTC-GAATCGAGGGTTGCGGCAGCAGGA
129 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGAAT-GAGGGTT------GC-GG-
* * * *
21503096 CCAGCAGCAGGATCGGCAGCACGCAGAGGGGATCG-GACCGATCCCTGGCTTACACATTCTTCCT
185 -CAG-AG--GGATCGGCAGCACGCAGAGGGGACCGAG-CCGATCCCCGACTTACACATTCTACCT
* * * * ** * * *
21503160 TTTCGGCCGGTTGAGCACCCGTACAGTCATTTCGTAGGTTTGCTTAGGCATACGTAGTTCATTCC
245 CTCCGACCGATTGAGCACCCGTACACCCATTTCATAGGTTAGCTTAGGCATACGGAGTTCATTCC
* ** * *
21503225 ATGTCTAAGCTCC-AGTCGCATCAAAGGTTGTGGCAACAGGA-TCGGC
310 ATGTCTAAAC-CCTAGTCAAACCAAAGATTGTGGCAACAGGACT-GGC
* *
21503271 AGCAGGATCGGTAGCACGCAGAGGGGGATCGAGTTGATCCTCGACTTGTGCATAATGCCTCTCCG
1 AGCAGGATCGATAGCACGCAGAGGGGGATCGAGTTGATCCTCGACTTGTGCATTATGCCTCTCCG
* * *
21503336 GTCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
66 GTCGGCTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
* * *
21503401 TAAGCATACGGAGGTCATTCCCAGTCTAAGATTGGATCGGAGTGAGGGTTGCGGCAGTGGGATCG
131 TAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGAATGAGGGTTGCGGCAGAGGGATCG
* * * * *
21503466 GCAGCATGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTACCTCTCCGATCGATTGAGC
196 GCAGCACGCAGAGGGGACCGAGCCGATCCCCGACTTACACATTCTACCTCTCCGACCGATTGAGC
* * * *
21503531 GCCCGTACACCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCTAGT
261 ACCCGTACACCCATTTCATAGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCTAGT
* * ** *
21503596 CAAACCGAAGATTGTGGTAGTAGGACTGGT
326 CAAACCAAAGATTGTGGCAACAGGACTGGC
** * * * * * *
21503626 AGTGGGATCGACAGCACGCAGAGAGGGA-CCAGGCTGATCCCCGACTTGT-CATTATGCCTCTTC
1 AGCAGGATCGATAGCACGCAGAGGGGGATCGA-GTTGATCCTCGACTTGTGCATTATGCCTCTCC
* * * * * *
21503689 GGTTGGCTTAGCGACTGTACGCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGT
65 GGTCGGCTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
* * * * * *
21503754 CTAAGCATATGGAGTTTATTCCCAGTCTAAGATCGAATCAGACTGAGGGTTGCGGCAGTA-GGAT
130 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGAATGAGGGTTGCGGCAG-AGGGAT
* * * * * * * **
21503818 CGGCAGCACCCAGGGGGGACCGGGCCGATCCCC-ACTTGCGCATTCTGCCTCTCCGATCGGCTGA
194 CGGCAGCACGCAGAGGGGACCGAGCCGATCCCCGACTTACACATTCTACCTCTCCGACCGATTGA
** * * ** * * * *
21503882 GTGCCCATACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTA
259 GCACCCGTACACCCATTTCATAGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCTA
21503947 G
324 G
21503948 CCAGACCGAG
Statistics
Matches: 575, Mismatches: 93, Indels: 31
0.82 0.13 0.04
Matches are distributed among these distances:
353 88 0.15
354 157 0.27
355 165 0.29
356 2 0.00
357 1 0.00
358 3 0.01
360 2 0.00
361 2 0.00
366 21 0.04
367 129 0.22
368 5 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (355 bp):
AGCAGGATCGATAGCACGCAGAGGGGGATCGAGTTGATCCTCGACTTGTGCATTATGCCTCTCCG
GTCGGCTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGAATGAGGGTTGCGGCAGAGGGATCG
GCAGCACGCAGAGGGGACCGAGCCGATCCCCGACTTACACATTCTACCTCTCCGACCGATTGAGC
ACCCGTACACCCATTTCATAGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCTAGT
CAAACCAAAGATTGTGGCAACAGGACTGGC
Found at i:21503758 original size:26 final size:26
Alignment explanation
Indices: 21503729--21503784 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
21503719 TGGGTTGACT
21503729 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* * *
21503755 TAAGCATATGGAGTTTATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
21503781 TAAG
1 TAAG
21503785 ATCGAATCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:21503805 original size:354 final size:354
Alignment explanation
Indices: 21503283--21503965 Score: 983
Period size: 354 Copynumber: 1.9 Consensus size: 354
21503273 CAGGATCGGT
* * * *
21503283 AGCACGCAGAGGGGGATCGAGTTGATCCTCGACTTGTGCATAATGCCTCTCCGGTCGGCTGAGCG
1 AGCACGCAGAGAGGGACCGAGCTGATCCCCGACTTGTGCATAATGCCTCTCCGGTCGGCTGAGCG
* * * *
21503348 CCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
66 ACCGCACGCTCATTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
* * * * * **
21503413 GGTCATTCCCAGTCTAAGATTGGATCGGAGTGAGGGTTGCGGCAGTGGGATCGGCAGCATGCAGG
131 GGTCATTCCCAGTCTAAGATCGAATCAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACCCAGG
* *
21503478 GGGGACCGAGCCGATCCCCGACTTGCGCATTCTACCTCTCCGATCGATTGAGCGCCCGTACACCC
196 GGGGACCGAGCCGATCCCC-ACTTGCGCATTCTACCTCTCCGATCGACTGAGCGCCCATACACCC
*
21503543 GTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCTAGTCAAACCGAAGAT
260 GTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCTAGCCAAACCGAAGAT
21503608 TGTGGTAGTAGGACTGGTAGTGGGATCGAC
325 TGTGGTAGTAGGACTGGTAGTGGGATCGAC
* * * *
21503638 AGCACGCAGAGAGGGACC-AGGCTGATCCCCGACTTGT-CATTATGCCTCTTCGGTTGGCTTAGC
1 AGCACGCAGAGAGGGACCGA-GCTGATCCCCGACTTGTGCATAATGCCTCTCCGGTCGGCTGAGC
* * * *
21503701 GACTGTACGCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATATGG
65 GACCGCACGCTCATTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
* *
21503766 AGTTTATTCCCAGTCTAAGATCGAATCAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACCCAG
130 AGGTCATTCCCAGTCTAAGATCGAATCAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACCCAG
* * * *
21503831 GGGGGACCGGGCCGATCCCCACTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCATACACCC
195 GGGGGACCGAGCCGATCCCCACTTGCGCATTCTACCTCTCCGATCGACTGAGCGCCCATACACCC
** * * * * *
21503896 GTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGT
260 GTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCTAGCCAAACCGAAGAT
21503961 TGTGG
325 TGTGG
21503966 CAACGAGACC
Statistics
Matches: 288, Mismatches: 39, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
353 102 0.35
354 155 0.54
355 31 0.11
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (354 bp):
AGCACGCAGAGAGGGACCGAGCTGATCCCCGACTTGTGCATAATGCCTCTCCGGTCGGCTGAGCG
ACCGCACGCTCATTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
GGTCATTCCCAGTCTAAGATCGAATCAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACCCAGG
GGGGACCGAGCCGATCCCCACTTGCGCATTCTACCTCTCCGATCGACTGAGCGCCCATACACCCG
TTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCTAGCCAAACCGAAGATT
GTGGTAGTAGGACTGGTAGTGGGATCGAC
Found at i:21504264 original size:26 final size:25
Alignment explanation
Indices: 21504228--21504279 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
21504218 TGGCTTTTAG
*
21504228 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCAT-TCTAA
21504254 GCATACAGAGTTCATTCCATTCTAA
1 GCATACAGAGTTCATTCCATTCTAA
21504279 G
1 G
21504280 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCATTCTAA
Found at i:21504464 original size:26 final size:26
Alignment explanation
Indices: 21504435--21504487 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21504425 GTTGACTTAG
21504435 GCATACGGAATTC-ATCCCCAGTCTAA
1 GCATACGGAATTCAAT-CCCAGTCTAA
* *
21504461 GCATATGGAGTTCAATCCCAGTCTAA
1 GCATACGGAATTCAATCCCAGTCTAA
21504487 G
1 G
21504488 ATTAAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAATTCAATCCCAGTCTAA
Found at i:21504749 original size:158 final size:154
Alignment explanation
Indices: 21504553--21504957 Score: 377
Period size: 153 Copynumber: 2.6 Consensus size: 154
21504543 GGTAATCCCC
* * * * * * *
21504553 GGCTTGCGCATTCTGCCTCTCTGGTCGGTTGAGTGCCCGCACGCCCGTTTTGTGGGTTGGGTTAG
1 GGCTTGCACATTATGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
* * * * * * *
21504618 GCATAGGGAGTTCATTCCATGTCCAAGCCCCATCGGATCGAGGGTTATGGCAGC-GAGA-CTGGC
66 GCATACGGAGTTCATTCCATGTCTAAG--CAAT-GGACCAAGGATTATGGCAGCAG-GATC-GAC
* *
21504681 AGCACACAGAGGGGGACCGAGCCGATCACT
126 AGCACACA-AGGGGAACCAAGCCGATCACT
* * * * ** * **
21504711 GGCTTGCATATTATGCCTCTCTGGCCGGCTCAGCGCCCGAACGCTCATTTCATGGTTTGTTTTAG
1 GGCTTGCACATTATGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
* * *
21504776 GCATACGGAGCTCATTCCCA-GTCTAAG-AATGGACCAAGGATTGTGGTAGCAGGATCGACAGCA
66 GCATACGGAGTTCATT-CCATGTCTAAGCAATGGACCAAGGATTATGGCAGCAGGATCGACAGCA
* ** *
21504839 CGCAAGGGGAACCAAGTTGATCCCT
130 CACAAGGGGAACCAAGCCGATCACT
* * * ** *
21504864 GGCTTGCGCATTCTGCCTCTCCGGCCAACTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAG
1 GGCTTGCACATTATGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
21504929 GCATACGGAGTTCATTCCATGTCTAAGCA
66 GCATACGGAGTTCATTCCATGTCTAAGCA
21504958 TACAGAGTTC
Statistics
Matches: 195, Mismatches: 47, Indels: 14
0.76 0.18 0.05
Matches are distributed among these distances:
152 3 0.02
153 88 0.45
154 27 0.14
155 4 0.02
158 70 0.36
159 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (154 bp):
GGCTTGCACATTATGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
GCATACGGAGTTCATTCCATGTCTAAGCAATGGACCAAGGATTATGGCAGCAGGATCGACAGCAC
ACAAGGGGAACCAAGCCGATCACT
Found at i:21504979 original size:26 final size:26
Alignment explanation
Indices: 21504929--21504981 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21504919 GTTGGCTTAG
* *
21504929 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
21504955 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
21504981 G
1 G
21504982 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:21505126 original size:703 final size:701
Alignment explanation
Indices: 21503707--21505231 Score: 1926
Period size: 703 Copynumber: 2.2 Consensus size: 701
21503697 TAGCGACTGT
* *
21503707 ACGCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTTA
1 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCA
* * * *
21503772 TTCCCAGTCTAAGATCGAATCAGA-CTGAGGGTTGCGGCAGTAGGATCGGCAGCACCCAGGGGGG
66 TTCCCAGTCTAAGATCAAATCGGATC-GAGGGTTGCGGTAGTAGGATCGGTAGCACCCAGGGGGG
* * *
21503836 ACCGGGCCGATCCCCACTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCATACACCCGTTTT
130 ACCAGGCCAATCCCCACTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCACACACCCGTTTT
* * *
21503901 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGG
195 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCCAAGCCCCAGCCAGACCGAGGGTTATGG
* ** *
21503966 CAACGAGACCGATAGCAGGCAAAGGGGGACCGAGCCAATCATCGACTTGCGCATTATGCCTCTCT
260 CAACGAGACCGACAGCACACAAAGGGGGACCGAGCCAATCATCGACTTGCACATTATGCCTCTCT
* * * *
21504031 GGCTGGCTCAGCGTCGAAACGCTCATTTCGTCGGTTGTCTTAGGCATATGGAGCTCATTCCCAAT
325 GGCCGGCTCAGCGCCGAAACGCTCATTTCATCGGTTGTCTTAGGCATACGGAGCTCATTCCCAAT
* * * * * *
21504096 TTAAGATCATACCAAAGATTGTGGCAGTAGGATCGATAACACGCAGGGGGATCAGGTCGATCCCC
390 CTAAGA-CATACCAAAGATTGTGGCAGCAGGATCGACAACACGCAGGGGAACCAAGTCGATCCCC
**
21504161 GGCTTGCGCATTCTACCTCTCCGACTGACTGAATGCCCCCACGCTCATTTCGTGGGTTGGCTTTT
454 GGCTTGCGCATTCTACCTCTCCGACCAACTGAATGCCCCCACGCTCATTTCGTGGGTTGGC-TTT
* *
21504226 AGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCATTCTAAGATCAAATCGGA
518 AGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCAATCTAAGATCAAACCGGA
* *
21504291 TCAAGGGTTATGGCAGCAGGAACAGTAGCAAGATCGACAGCATGTAGGGGGCCCGGGCTGATCCA
583 CCAAGGGTTATGGCAGCAGGAACAGCAGCAAGATCGACAGCATGTAGGGGGCCCGGGCTGATCCA
** * * *
21504356 CGGCTTGCGTATTTTGCCTCTCCGATCGGCCTCTCCAACCGGTTGAGCGCTCGC
648 CGGCTTGCACATTCTACCTCTCCGATCGGCCTCTCCAACCGGTTGAGCGCCCGC
* *
21504410 ATGCTCATTTCGTGGGTTGACTTAGGCATACGGAATTCATCCCCAGTCTAAGCATATGGAGTTCA
1 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCA
* * * * * *
21504475 ATCCCAGTCTAAGATTAAATCGGATCGAGGGTTACGATAGTAGGATCGGTAGCACGCTGGGGGGA
66 TTCCCAGTCTAAGATCAAATCGGATCGAGGGTTGCGGTAGTAGGATCGGTAGCACCCAGGGGGGA
** * * * * * * *
21504540 TTAGG-TAATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGTTGAGTGCCCGCACGCCCGTTTT
131 CCAGGCCAATCCCC-ACTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCACACACCCGTTTT
* * * *
21504604 GTGGGTTGGGTTAGGCATAGGGAGTTCATTCCATGTCCAAGCCCCA-TCGGATCGAGGGTTATGG
195 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCCAAGCCCCAGCCAGACCGAGGGTTATGG
* * * * * * *
21504668 CAGCGAGACTGGCAGCACACAGAGGGGGACCGAGCCGATCA-CTGGCTTGCATATTATGCCTCTC
260 CAACGAGACCGACAGCACACAAAGGGGGACCGAGCCAATCATC-GACTTGCACATTATGCCTCTC
*
21504732 TGGCCGGCTCAGCGCCCG-AACGCTCATTTCAT-GGTTTGTTTTAGGCATACGGAGCTCATTCCC
324 TGGCCGGCTCAGCG-CCGAAACGCTCATTTCATCGG-TTGTCTTAGGCATACGGAGCTCATTCCC
* * * * *
21504795 AGTCTAAGA-ATGGACCAAGGATTGTGGTAGCAGGATCGACAGCACGCAAGGGGAACCAAGTTGA
387 AATCTAAGACAT--ACCAAAGATTGTGGCAGCAGGATCGACAACACGC-AGGGGAACCAAGTCGA
* * * * *
21504859 TCCCTGGCTTGCGCATTCTGCCTCTCCGGCCAACTG-A-GCACCCGCACGCTCGTTTTGTGGGTT
449 TCCCCGGCTTGCGCATTCTACCTCTCCGACCAACTGAATGC-CCC-CACGCTCATTTCGTGGGTT
21504922 GGC-TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCA
512 GGCTTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATT-CCAATCTAAGATCA
* * * * *
21504986 AACCGGACCGAA-GGTTGA-GGCAGTAGGACCAGCAGGAGGATCGA-AGCATGTATGGGGGCCTG
576 AACCGGACC-AAGGGTT-ATGGCAGCAGGAACAGCAGCAAGATCGACAGCATGTA-GGGGGCCCG
* ** * * * *
21505048 GGTTGATCCTTGGCTTGCACATTCTACCTTTCC-AGCTGGCCTCTCCGATCGGTTGAGCGCCCGC
638 GGCTGATCCACGGCTTGCACATTCTACCTCTCCGATC-GGCCTCTCCAACCGGTTGAGCGCCCGC
** * * * *
21505112 ACGCTTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACGAAGTTC
1 ACGC-TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTC
* *
21505177 ATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGGTAGTAGGATCGATAGCA
65 ATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTGCGGTAGTAGGATCGGTAGCA
21505232 TGGACCGAGG
Statistics
Matches: 704, Mismatches: 102, Indels: 32
0.84 0.12 0.04
Matches are distributed among these distances:
700 2 0.00
701 61 0.09
702 268 0.38
703 372 0.53
704 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (701 bp):
ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCA
TTCCCAGTCTAAGATCAAATCGGATCGAGGGTTGCGGTAGTAGGATCGGTAGCACCCAGGGGGGA
CCAGGCCAATCCCCACTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCACACACCCGTTTTG
TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCCAAGCCCCAGCCAGACCGAGGGTTATGGC
AACGAGACCGACAGCACACAAAGGGGGACCGAGCCAATCATCGACTTGCACATTATGCCTCTCTG
GCCGGCTCAGCGCCGAAACGCTCATTTCATCGGTTGTCTTAGGCATACGGAGCTCATTCCCAATC
TAAGACATACCAAAGATTGTGGCAGCAGGATCGACAACACGCAGGGGAACCAAGTCGATCCCCGG
CTTGCGCATTCTACCTCTCCGACCAACTGAATGCCCCCACGCTCATTTCGTGGGTTGGCTTTAGG
CATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCAATCTAAGATCAAACCGGACCA
AGGGTTATGGCAGCAGGAACAGCAGCAAGATCGACAGCATGTAGGGGGCCCGGGCTGATCCACGG
CTTGCACATTCTACCTCTCCGATCGGCCTCTCCAACCGGTTGAGCGCCCGC
Found at i:21505167 original size:26 final size:26
Alignment explanation
Indices: 21505138--21505190 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21505128 GTTGACTTAG
* *
21505138 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21505164 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21505190 G
1 G
21505191 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21505393 original size:26 final size:26
Alignment explanation
Indices: 21505357--21505409 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21505347 GTTGGCTTAG
21505357 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
21505383 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
21505409 G
1 G
21505410 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:21506615 original size:26 final size:26
Alignment explanation
Indices: 21506579--21506629 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21506569 TTGGCTTAGG
21506579 CATACGGAGTTCATT-CCATGTCTAAA
1 CATACGGAGTTCATTCCCA-GTCTAAA
21506605 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
21506630 GATCAGACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:21506975 original size:26 final size:26
Alignment explanation
Indices: 21506945--21506997 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21506935 GTTGACTTAG
21506945 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21506971 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21506997 G
1 G
21506998 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21507496 original size:26 final size:26
Alignment explanation
Indices: 21507446--21507498 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21507436 GTTGCCTTAG
* *
21507446 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
21507472 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
21507498 G
1 G
21507499 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:21507694 original size:26 final size:26
Alignment explanation
Indices: 21507655--21507707 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21507645 GTTGACCTGG
*
21507655 GCATACGGAGTTCA-TCCTTAGTCTAA
1 GCATACGGAATTCATTCC-TAGTCTAA
21507681 GCATACGGAATTCATTCCTAGTCTAA
1 GCATACGGAATTCATTCCTAGTCTAA
21507707 G
1 G
21507708 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCCTAGTCTAA
Found at i:21507988 original size:159 final size:157
Alignment explanation
Indices: 21507720--21508024 Score: 439
Period size: 159 Copynumber: 1.9 Consensus size: 157
21507710 CGAATCAGAC
* * * * *
21507720 CGAGGGTTGCGGCAGCAGGATCGATAGCATGCAGGGGGACCGGGCCGATCCCCGGCTTGTGCATT
1 CGAGGGTTGCGGCAACAGGACCGACAGAATGCAGGGGGACCAGGCCGATCCCCGGCTTGTGCATT
* ** *
21507785 CTGCCTCTTCGGCCGACTGAGTGCCCGTACGCCCAGTTCATGGGTTGGCTTAGGCATAAGGAGTT
66 ATGCCTCTTCGGCCGACTGAGCACCCGCACGCCCAGTTCATGGGTTGGCTTAGGCATAAGGAGTT
21507850 CATTCCATGTCTAAGCCCCAGTCGGAT
131 CATTCCATGTCTAAGCCCCAGTCGGAT
* *
21507877 CGAGGGTTGTGGCAACAGGACCGACAGAATGCAGAGGGGGATCAGGCCGATCCCCGGCTTGTGCA
1 CGAGGGTTGCGGCAACAGGACCGACAGAATGC--AGGGGGACCAGGCCGATCCCCGGCTTGTGCA
* * * * * *
21507942 TTATGCCTTTTCGGTCGACTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAG
64 TTATGCCTCTTCGGCCGACTGAGCACCCGCACGCCCAGTTCATGGGTTGGCTTAGGCATAAGGAG
21508007 TTCATTCCATGTCTAAGC
129 TTCATTCCATGTCTAAGC
21508025 ATACGGAGTT
Statistics
Matches: 129, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
157 27 0.21
159 102 0.79
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (157 bp):
CGAGGGTTGCGGCAACAGGACCGACAGAATGCAGGGGGACCAGGCCGATCCCCGGCTTGTGCATT
ATGCCTCTTCGGCCGACTGAGCACCCGCACGCCCAGTTCATGGGTTGGCTTAGGCATAAGGAGTT
CATTCCATGTCTAAGCCCCAGTCGGAT
Found at i:21508033 original size:26 final size:26
Alignment explanation
Indices: 21507997--21508049 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21507987 GTTGGCTTAG
21507997 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
21508023 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21508049 G
1 G
21508050 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21508201 original size:26 final size:26
Alignment explanation
Indices: 21508171--21508223 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21508161 GTTGACTTAG
21508171 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
21508197 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21508223 G
1 G
21508224 ATCAAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21508564 original size:517 final size:515
Alignment explanation
Indices: 21507642--21508585 Score: 1329
Period size: 517 Copynumber: 1.8 Consensus size: 515
21507632 GCTTTTTTTG
* * ** *
21507642 TGGGTTGACCTGGGCATACGGAGTTCATCCTTAGTCTAAGCATACGGAATTCATTCCTAGTCTAA
1 TGGGTTGACCTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAATTCATTCCCAGTCTAA
* * *
21507707 GATCGAATCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCATGCAGGGGGACCGGGCCGATCCC
66 GATCAAATCAGACAGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGACCGGGCCGATCCC
** ** * * * **
21507772 CGGCTTGTGCATTCTGCCTCTTCGGCCGACTGAGTGCCCGTACGCCCAGTTCATGGGTTGGCTTA
131 CAACTTGCACATTATGCCTCTCCGACCGACTGAGCACCCGTACGCCCAGTTCATGGGTTGGCTTA
* * *
21507837 GGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAACAGGACCGAC
196 GGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACAGGACCGAC
* * * ** * *
21507902 AGAATGCAGAGGGGGATCAGGCCGATCCCCGGCTTGTGCATTATGCCTTTTCGGTCGACTGAGCA
261 AGAAAGCAGAAGGGGATCAGGCCGATCCCCGACTTACGCATTATGCCTTTCCAGTCGACTGAGCA
* *
21507967 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
326 CCCGCACGCTCATTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGA
* * *
21508032 GTTGATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCAAGACCAGCAGCAGGATCA
391 GTTCATTCCCAGTCTAAGATC-GACCAGATCGAGGGTTGCGGCAGCAAGACCAGCAGCAGGATCA
21508097 GTAGTATTCTGCCTCTCCAATCGGCCTGTCCGACTGGAAGAGTACCCACACGCTCGTTTCA
455 GTAGTATTCTGCCTCTCCAATCGGCCTGTCCGACTGGAAGAGTACCCACACGCTCGTTTCA
* * *
21508158 TGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACCTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAATTCATTCCCAGTCTAA
* *
21508223 GATCAAA-CTAGACAGAGGGTTGTGGCAGCAGGATCGATAGCACGTAGGGGGGACCGGGCCGATC
66 GATCAAATC-AGACAGAGGGTTGCGGCAGCAGGATCGATAGCACGCA-GGGGGACCGGGCCGATC
* * **
21508287 CCCAACTTGCACATTATGCCTCTCCGACCGGCTGAGCACCCGTATGCCC-GTTTTGTGGGTTGGC
129 CCCAACTTGCACATTATGCCTCTCCGACCGACTGAGCACCCGTACGCCCAG-TTCATGGGTTGGC
* *
21508351 TTAGGCAT-AGTGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGC-GAGA
193 TTAGGCATAAG-GAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACAG-GA
* * * * * **
21508414 CCGACAGAAAGTAGAAGGGGATCGGGCCGATTCGCGACTTACGCATTCTGCCTTTCCAGTCGGTT
256 CCGACAGAAAGCAGAAGGGGATCAGGCCGATCCCCGACTTACGCATTATGCCTTTCCAGTCGACT
* *
21508479 GAGCACCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCTT
321 GAGCACCCGCACGCTCATTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCAT
*
21508544 ACGGAGTTCATTCTCAGTCTAAGATCGACCAGATCGAGGGTT
386 ACGGAGTTCATTCCCAGTCTAAGATCGACCAGATCGAGGGTT
21508586 ACGATAGCAG
Statistics
Matches: 370, Mismatches: 53, Indels: 10
0.85 0.12 0.02
Matches are distributed among these distances:
515 1 0.00
516 114 0.31
517 255 0.69
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (515 bp):
TGGGTTGACCTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAATTCATTCCCAGTCTAA
GATCAAATCAGACAGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGACCGGGCCGATCCC
CAACTTGCACATTATGCCTCTCCGACCGACTGAGCACCCGTACGCCCAGTTCATGGGTTGGCTTA
GGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACAGGACCGAC
AGAAAGCAGAAGGGGATCAGGCCGATCCCCGACTTACGCATTATGCCTTTCCAGTCGACTGAGCA
CCCGCACGCTCATTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCGACCAGATCGAGGGTTGCGGCAGCAAGACCAGCAGCAGGATCAG
TAGTATTCTGCCTCTCCAATCGGCCTGTCCGACTGGAAGAGTACCCACACGCTCGTTTCA
Found at i:21508753 original size:26 final size:26
Alignment explanation
Indices: 21508722--21508774 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21508712 GTTGGCTTAG
21508722 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
21508748 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21508774 G
1 G
21508775 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21509139 original size:26 final size:26
Alignment explanation
Indices: 21509103--21509155 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21509093 GTTGACTTAG
21509103 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21509129 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21509155 G
1 G
21509156 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21509670 original size:26 final size:26
Alignment explanation
Indices: 21509634--21509684 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21509624 TAGCTTAGGC
21509634 ATACAGAGTTCATT-CCATGTCTAAGG
1 ATACAGAGTTCATTCCCA-GTCTAAGG
*
21509660 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
21509685 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGG
Found at i:21510392 original size:26 final size:26
Alignment explanation
Indices: 21510356--21510407 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21510346 GTTGACTTAG
*
21510356 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
21510382 GCATACTGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
21510408 AATCAAACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:21510699 original size:159 final size:159
Alignment explanation
Indices: 21510529--21510885 Score: 362
Period size: 158 Copynumber: 2.3 Consensus size: 159
21510519 CCGTTTCATG
* * *
21510529 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCAAGGGTTGTGGCA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTATGGCA
* * * * * * * * *
21510593 GC-GAGACCGGCAGCATGCAGAGTGGGATCGGGTCGATCCTCGACTTGCACATTATGCCTCTTCG
66 ACAG-GACCGACAGCACGCAG-GGGGGACCGGGTCGATCCCCAACTTGCACATTATACCTCTCCG
* *
21510657 GCCGGCTCAATGCCCGTACGCTCATTTCGTA
129 GCCGGCTCAACGCCCGCACGCTCATTTCGTA
* * * * * * *
21510688 GGTTGACTTAGGCATATGGAGTTCTTTCCCA-ATCTAAG-ATCGGACCAGACCGAGGGTTATGGC
1 GGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCAAGGGTTATGGC
* * ** *
21510751 AACAGGATCGATAGCACGCAGGGGGGACCGGGTCGATCCCCAACTTGTGCATTCTACCTCTCCGG
65 AACAGGACCGACAGCACGCAGGGGGGACCGGGTCGATCCCCAACTTGCACATTATACCTCTCCGG
* * * * * *
21510816 TCGGTTGAGCGCCTGCACGCTCATTTCGTG
130 CCGGCTCAACGCCCGCACGCTCATTTCGTA
*
21510846 GGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAAGCA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
21510886 TACAAAGTTC
Statistics
Matches: 157, Mismatches: 36, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.02
158 88 0.56
159 62 0.39
160 4 0.03
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTATGGCA
ACAGGACCGACAGCACGCAGGGGGGACCGGGTCGATCCCCAACTTGCACATTATACCTCTCCGGC
CGGCTCAACGCCCGCACGCTCATTTCGTA
Found at i:21510882 original size:158 final size:157
Alignment explanation
Indices: 21510436--21510884 Score: 420
Period size: 159 Copynumber: 2.8 Consensus size: 157
21510426 GTTGCGACAG
* * * ** * *
21510436 CAGGATCGACAGCCCCCAAGGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCC
1 CAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCC
* * * * * *
21510501 GGTTGAGCAGCCACACTCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
66 GGTTGAGC-GCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
21510566 GCCCCAGCCAGACCAAGGGTTGTGGCAG
130 GCCCCAGCCAGACCAAGGGTTATGGCAA
* * * * * * * * *
21510594 C-GAGACCGGCAGCATGCAGAGTGGGATCGGGTCGATCCTCGACTTGCACATTATGCCTCTTCGG
1 CAG-GATCGACAGCACGCAG-GGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGG
** * * * * * *
21510658 CCGGCTCAATGC-CCGTACGCTCATTTCGTAGGTTGACTTAGGCATATGGAGTTCTTTCCCA-AT
64 CCGG-TTGA-GCGCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGT
** * *
21510721 CTAAG-ATCGGACCAGACCGAGGGTTATGGCAA
126 CTAAGCCCCAG-CCAGACCAAGGGTTATGGCAA
* * * * *
21510753 CAGGATCGATAGCACGCAGGGGGGACCGGGTCGATCCCCAACTTGTGCATTCTACCTCTCCGGTC
1 CAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCC
*
21510818 GGTTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAA
66 GGTTGAGCGCC-GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
21510883 GC
130 GC
21510885 ATACAAAGTT
Statistics
Matches: 222, Mismatches: 58, Indels: 21
0.74 0.19 0.07
Matches are distributed among these distances:
156 2 0.01
157 8 0.04
158 94 0.42
159 110 0.50
160 6 0.03
161 2 0.01
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (157 bp):
CAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCC
GGTTGAGCGCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CCCCAGCCAGACCAAGGGTTATGGCAA
Found at i:21511130 original size:12 final size:12
Alignment explanation
Indices: 21511115--21511143 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
21511105 AGCAAGACCG
21511115 GCAGCGAGATCA
1 GCAGCGAGATCA
21511127 GCAGCGAGATCA
1 GCAGCGAGATCA
21511139 GCAGC
1 GCAGC
21511144 ACGTAGAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.31, C:0.28, G:0.34, T:0.07
Consensus pattern (12 bp):
GCAGCGAGATCA
Found at i:21511279 original size:26 final size:26
Alignment explanation
Indices: 21511249--21511301 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21511239 GTTGACTTAG
21511249 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21511275 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21511301 G
1 G
21511302 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21511475 original size:26 final size:26
Alignment explanation
Indices: 21511446--21511496 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21511436 TGGCTTAGGC
21511446 ATACGGAGCTCATT-CCATGTCTAAGT
1 ATACGGAGCTCATTCCCA-GTCTAAGT
*
21511472 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGCTCATTCCCAGTCTAAG
21511497 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGCTCATTCCCAGTCTAAGT
Found at i:21518615 original size:159 final size:158
Alignment explanation
Indices: 21518133--21518622 Score: 495
Period size: 159 Copynumber: 3.1 Consensus size: 158
21518123 AAGATCAGAC
* * * * * * *
21518133 CGGACCGAGGGTTACGGCAGCAGGATCGACAGCATGCA-GGGGGGACCGAGCCAATCCCCCGTTT
1 CGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGGACCGAGTCGATCCCCAGCTT
* *
21518197 GCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCTATTTTCATGCGTTGGCTTAGGCATA
66 GCGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACGCTA-TTTCATGAGTTGGCTTAGGCATA
* * **
21518262 GGGAGTTCATTCCATGTCTAAGCCCCAAT
130 CGGAGTTCATTCCATGTCTAAACCCCCGT
* * * * * * * **
21518291 CGGATCGAAGGCTGTGGCAGTGGGACCGCCAGCACGCAGAAGGGGACCGAGTCGATCCCCAGCTT
1 CGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGGACCGAGTCGATCCCCAGCTT
* * * * * * *
21518356 GCGCATTATGCCTCTCCGGCCGACTCAACACCCGCACGCTTGTTTCATGAGTTGACTTAGGCATA
66 GCGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACGC-TATTTCATGAGTTGGCTTAGGCATA
* *
21518421 CGGAGTTCATTCCCA-GTCTAAGA--TCCGAC
130 CGGAGTTCATT-CCATGTCTAA-ACCCCCG-T
* * * * * * *
21518450 CAGACCGAGGGTTGCAGCAGTAGGATCAATAGCACGTAGGGGGGGACCGGGTCGATCCCCGGCTT
1 CGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGGACCGAGTCGATCCCCAGCTT
* * * *
21518515 GCGCATTCTGCCTCTCCAGTCGGTTGAGCACCCGCACACTCATTTCGT-AGGTTGGCTTAGGCAT
66 GCGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACGCT-ATTTCATGA-GTTGGCTTAGGCAT
*
21518579 ACGGAGTTCATTCCATCTCTAAACCCCCGT
129 ACGGAGTTCATTCCATGTCTAAACCCCCGT
21518609 CGGACCGAGGGTTG
1 CGGACCGAGGGTTG
21518623 TGGTAGCAGG
Statistics
Matches: 260, Mismatches: 62, Indels: 19
0.76 0.18 0.06
Matches are distributed among these distances:
158 35 0.13
159 218 0.84
160 7 0.03
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.21
Consensus pattern (158 bp):
CGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGGACCGAGTCGATCCCCAGCTT
GCGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACGCTATTTCATGAGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAACCCCCGT
Found at i:21518789 original size:26 final size:26
Alignment explanation
Indices: 21518759--21518811 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21518749 GTTTACTTAG
* *
21518759 GCATATGGAGTTCATCCCCAGTTTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
*
21518785 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
21518811 G
1 G
21518812 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAGTCTAA
Found at i:21519280 original size:343 final size:336
Alignment explanation
Indices: 21518416--21519464 Score: 983
Period size: 343 Copynumber: 3.0 Consensus size: 336
21518406 GTTGACTTAG
* * * *
21518416 GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACCGAGGGTTGC-AGCAGTAGGATCAAT
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGA-CAGCAGGATCGAT
* * * *
21518480 AGCACGTAGGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGTTGAGCA
65 AGCACATA---GGGGACC-GGTGGATCCCCGGCTTGCGCATTTTGCCTCTCCA-TCGGCTGAGCA
* * * * * * * *
21518545 CCCGCACACTCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATCTCTAAACCCCCGTC
125 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCCCAGTC
* * *
21518610 GGACCGAGGGTTGTGGTAGCAGGACCAGCAACGGGATCGACAGTATGTAGAGGGGGATCGAGCTA
189 GAACC-AAGG--GT--TA--TGG--CAG---CGGGATCGACAGTATGTAGAGGGGGATCGAGC-A
* * **
21518675 ATCCCCGACTTACGCATTATGCCTCTCTGGCTGGCCTCTCCAGCCGGTTGAGCGCCCGTGCGCTC
241 AT-CCCGACTTACGCATTATGCCTCT-T--C--G--------GCCGGCTCAGCGCCCGCACGCTC
* * * *
21518740 GTTTCATGGGTTTACTTAGGCATATGGAGTTCATCCCCAGTTTAA
292 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATTTAA
* * * * * *
21518785 GCATATGAAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGACAGCAGGATTGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGATA
* * * * * *
21518850 GCATGCAGAGGGGACCGG-GCCAGTCCCCGGCTTGATG-ATTTTGTCTCTCCGACCGGCTGACCA
66 GCA--CATAGGGGACCGGTG-GA-TCCCCGGCTTG-CGCATTTTGCCTCTCC-ATCGGCTGAGCA
*
21518913 TCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGTC
125 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG-GAGTTCATTCCATGTCTAAGCCCCAGTC
* *
21518978 GAACCAAGGGTTATGGCAGCGGGATCGACAGTATGCAGAGGGGGACCGAGTCAATCCTCGACTTA
189 GAACCAAGGGTTATGGCAGCGGGATCGACAGTATGTAGAGGGGGATCGAG-CAATCC-CGACTTA
*
21519043 CGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATAC
252 CGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
21519108 GGAGTTCATCCCCAATTTAA
317 GGAGTTCATCCCCAATTTAA
* * * * *
21519128 GTATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGATTACGATAGCAGGATCGATA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGATA
*
21519193 GCACATAGGGCAGACCGAGTGGATCCCCGGCTTGCGCATTTTGCCTCTCCTATCGGCTGAGCGCC
66 GCACATAGGG--GACCG-GTGGATCCCCGGCTTGCGCATTTTGCCTCTCC-ATCGGCTGAGCACC
* * *
21519258 CACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAG-CCA
127 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCCCAGTCGA
* * * * ** * * * *
21519322 GACCGAGGGTTGTGGTAGCGGGA-CCAGCAACACGTAGAGGGGGATCGGGCCAATCCCTAGCTTG
191 -ACCAAGGGTTATGGCAGCGGGATCGA-CAGTATGTAGAGGGGGATCGAG-CAATCCCGA-CTTA
* ** * *
21519386 CGCATTATGCCTTTTCGATCGGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTATGCATAC
252 CGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
21519451 GGAGTTCATTCCCA
317 GGAGTTCATCCCCA
21519465 GTCTAAGATA
Statistics
Matches: 575, Mismatches: 86, Indels: 64
0.79 0.12 0.09
Matches are distributed among these distances:
341 6 0.01
342 7 0.01
343 327 0.57
344 3 0.01
345 1 0.00
351 1 0.00
353 1 0.00
355 3 0.01
356 53 0.09
357 1 0.00
359 3 0.01
361 2 0.00
363 2 0.00
365 2 0.00
367 7 0.01
368 95 0.17
369 58 0.10
370 1 0.00
371 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (336 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGATA
GCACATAGGGGACCGGTGGATCCCCGGCTTGCGCATTTTGCCTCTCCATCGGCTGAGCACCCGCA
CGCCCGTTTCATGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCAA
GGGTTATGGCAGCGGGATCGACAGTATGTAGAGGGGGATCGAGCAATCCCGACTTACGCATTATG
CCTCTTCGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
CCCCAATTTAA
Found at i:21520394 original size:158 final size:157
Alignment explanation
Indices: 21519912--21520398 Score: 498
Period size: 158 Copynumber: 3.1 Consensus size: 157
21519902 CTAAGCTTAT
* * *
21519912 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCAGGATCGATAGCACGC
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG-CAGCAGGATCGACAGCACGC
* * * * *
21519977 AGTGCGGATCGGGCCGATCCCCTGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACG
65 AGGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCACAC-
21520042 GCT-GTTTCGTGGGTTGGCTTAGGCATAC
129 GCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * ** * **
21520070 GGATTTCATT-TCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGTGGGATCTG-CAGCA
1 GGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTG-CGCAGCAGGATC-GACAGCA
* * * * * * * * * *
21520132 CGCAGAGAGGGACCGGGCTGATCCCCGACTTGCGCATTAC-GCCTCTCCAGTCGACTCAGCACCC
62 CGCAG-GGGGGATCAGGCCGATCCCCGGCTTGCGCATT-CTGCCTCTTCGGTCGGCTGAGCGCCC
** * * *
21520196 TTACACTCGTTTTGTGGGTTGACTTAGGCATAC
125 ACACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * *
21520229 GGAGTTCATTCCCAGTCTACGATCAGACTGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGT
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-GCAGCAGGATCGACAGCACGC
* * * * *
21520294 AGGGGGGATCAAGTCGGTCCCCGGCTTGCCCATTCTGCGTCTTCGGTCGGCTGAGCGCCCACACG
65 AGGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCACACG
* *
21520359 CTCGTTTCGTGTGTTGGCTTAGGCACAC
130 CTCGTTTCGTGGGTTGGCTTAGGCATAC
21520387 GGAGTTCATTCC
1 GGAGTTCATTCC
21520399 ATGTTTAAGC
Statistics
Matches: 258, Mismatches: 59, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 3 0.01
158 132 0.51
159 120 0.47
160 3 0.01
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (157 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGCAGCAGGATCGACAGCACGCA
GGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCACACGC
TCGTTTCGTGGGTTGGCTTAGGCATAC
Found at i:21520532 original size:184 final size:184
Alignment explanation
Indices: 21520223--21520591 Score: 501
Period size: 184 Copynumber: 2.0 Consensus size: 184
21520213 GTTGACTTAG
* * * * * *
21520223 GCATACGGAGTTCATTCCCAGTCTACGATCAGACTGGACCGAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACTAGACCGAGGGTTGCAGCAACAGGACCAACA
* * * * * *
21520288 GCACGTAGGGGGGATCAAGTCGGTCCCCGGCTTGCCCATTCTGCGTCTTCGGTCGGCTGAGCGCC
66 GCACGCAGGGGGGACCAAGTCGATCCCCGGCTTGCCCATTCTACCTCTCCGGTCGGCTGAGCGCC
* * *
21520353 CACACGCTCGT-TTCGTGTGTTGGCTTAGGCACACGGAGTTCATTCCATGTTTAA
131 CACACGC-CCTCTTCGTGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTCTAA
*
21520407 GCATACGGAGTTCATTCCCAGTCTAAGATCAAA-TCAGACCGAGGGTTGCGGCAACAGGACCAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACT-AGACCGAGGGTTGCAGCAACAGGACCAAC
* *
21520471 AGCACGCAGGGGGGACCAAG-CAGATCCTCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCG
65 AGCACGCAGGGGGGACCAAGTC-GATCCCCGGCTTGCCCATTCTACCTCTCCGGTCGGCTGAGCG
* * *
21520535 CCCACATGCCCTCTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
129 CCCACACGCCCTCTTCGTGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTCTAA
21520591 G
1 G
21520592 ACTCAGTCGG
Statistics
Matches: 161, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
183 4 0.02
184 157 0.98
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACTAGACCGAGGGTTGCAGCAACAGGACCAACA
GCACGCAGGGGGGACCAAGTCGATCCCCGGCTTGCCCATTCTACCTCTCCGGTCGGCTGAGCGCC
CACACGCCCTCTTCGTGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTCTAA
Found at i:21521102 original size:26 final size:26
Alignment explanation
Indices: 21521072--21521124 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21521062 GTTGACTTAG
*
21521072 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
21521098 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
21521124 G
1 G
21521125 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:21521145 original size:343 final size:342
Alignment explanation
Indices: 21520100--21521441 Score: 1155
Period size: 343 Copynumber: 3.9 Consensus size: 342
21520090 GCCCCAGCCG
** * * *
21520100 GACCGAGGGTTGTGGCAGTGGGATCTG-CAGCACGCAGAGAGGGACCGGGCTGATCCCC-GACTT
1 GACCGAGGGTTACGACAGTAGGATC-GACAGCACGCAG-GAGGGACCGAGCTGATCCCCAG-CTT
*** * * * * * *
21520163 GCGCATTACGCCTCTCCAGTCGACTCAGCACCCTTACACTCGTTTTGTGGGTTGACTTAGGCATA
63 GCGCATTTTACCTCTCCGGTCGGCTGAGCACCC-TACACCCGTTTCGTGGGTTGGCTTAGGCATA
* * ** * ** * *
21520228 CGGAGTTCATTCCCA-GTCTACG-ATCAGACTGGACCGAGGGTTGCAGCAGCAGGATCGACAGCA
127 GGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCA
* * ** * * * * * * ** * *
21520291 CGTAG-GGGGGATCAAG-TCGGTCCCCGGCTTGCCCATTCTGCGTCTTCGGTCGGCTGAGCGCCC
190 CGCAGAGGGGGACCGGGCT-GATCCTCGACTTGCGCATTATGCCTCTTCGACCGGCTCAGTGCCC
* * * * * *
21520354 ACACGCTCGTTTCGTGTGTTGGCTTAGGCACACGGAGTTCATT-CCATGTTTAAGCATACGGAGT
254 ACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCATACAGAGT
* *
21520418 TCATTCCCAGTCTAAGATCAAATCA
318 TCATTCCCAGTCTAAGATCAGACCA
* * ** * * * * * * *
21520443 GACCGAGGGTTGCGGCAACAGGACCAACAGCACGCAGGGGGGACCAAGCAGATCCTCGGCTTGCG
1 GACCGAGGGTTACGACAGTAGGATCGACAGCACGCAGGAGGGACCGAGCTGATCCCCAGCTTGCG
* *
21520508 CATTCTACCTCTCCGGTCGGCTGAGCGCCC-ACATGCCC-TCTTCGTGGGTTGGCTTAGGCATAG
66 CATTTTACCTCTCCGGTCGGCTGAGCACCCTACA--CCCGT-TTCGTGGGTTGGCTTAGGCATAG
* * * * * * *
21520571 GGAGTTCATTCCATGTCTAAGACTCAGTCGGATCGAGGGATGTGGCAGC---A-AGACTG---GC
128 GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGC
* * * * * * * *
21520629 --AGCGGGATCAGGGCTAATCCTCGGCTTGAGCATTGTGCCTCTCCGATCGGCCTCTCCAGCCAG
193 AGAGGGGGA-CCGGGCTGATCCTCGACTTGCGCATTATGCCTCTTCGACCGG---CT-----CAG
* *
21520692 CTAAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGC
249 -T----GCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* *
21520757 ATACAAAGTTCATTCCCAGTCTAAGATC-GAACCG
309 ATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCA
* * * * * *
21520791 GATCAAGGGTTACGACAGTAGGATCGACAGTACGCAGGAGGGACCGGGCTGATCCCCATCTTGTG
1 GACCGAGGGTTACGACAGTAGGATCGACAGCACGCAGGAGGGACCGAGCTGATCCCCAGCTTGCG
* * *
21520856 CATTTTGCCTCTTCGGTCGGCTGAGCATCC-ACACGTCCGTTTCGTGGGTTGGCTTAGGCATAGG
66 CATTTTACCTCTCCGGTCGGCTGAGCACCCTACAC--CCGTTTCGTGGGTTGGCTTAGGCATAGG
* * *
21520920 GAGTTCATTCCATGTCTATGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGACAGCATGCA
129 GAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCA
* *
21520985 GAGGGGGACCGGGCTTATCCTCGACTTGCGCATTATGCCTCTTCGACCGGCTCAGTGCCCGCACG
194 GAGGGGGACCGGGCTGATCCTCGACTTGCGCATTATGCCTCTTCGACCGGCTCAGTGCCCACACG
* *
21521050 CTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTC
259 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTC
21521115 CCAGTCTAAGATCAGACCA
324 CCAGTCTAAGATCAGACCA
* * * *
21521134 GACCGAGGGTTACGACAGTAGGATCGGCAGCATTG-AGG-GCGGACCGAGCCGATCCCCGGCTTG
1 GACCGAGGGTTACGACAGTAGGATCGACAGCA-CGCAGGAG-GGACCGAGCTGATCCCCAGCTTG
* * ** * *
21521197 CGTATTTTACCTCTCCGGTCGGTTGAGTGCCCGTATACCCATTTCGTGGGTTGGCTTAGGCATAG
64 CGCATTTTACCTCTCCGGTCGGCTGAGCACCC-TACACCCGTTTCGTGGGTTGGCTTAGGCATAG
** * * *
21521262 GGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGT
128 GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGC
** * * * * * * *
21521327 AGAGGGGGATTGGGCTGATCC-CCAGTTTGCGCACTATGCCTGTTCGGCTGGCTCAGTGCCCGCA
193 AGAGGGGGACCGGGCTGATCCTCGA-CTTGCGCATTATGCCTCTTCGACCGGCTCAGTGCCCACA
* * *
21521391 CGCTCGTTTTATGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAG
257 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
21521442 ATCAGACCGA
Statistics
Matches: 808, Mismatches: 148, Indels: 86
0.78 0.14 0.08
Matches are distributed among these distances:
334 5 0.01
335 28 0.03
336 1 0.00
338 6 0.01
339 1 0.00
340 3 0.00
341 4 0.00
342 101 0.12
343 376 0.47
344 2 0.00
345 3 0.00
346 1 0.00
347 1 0.00
348 222 0.27
349 4 0.00
351 1 0.00
352 4 0.00
353 2 0.00
355 2 0.00
356 35 0.04
357 6 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (342 bp):
GACCGAGGGTTACGACAGTAGGATCGACAGCACGCAGGAGGGACCGAGCTGATCCCCAGCTTGCG
CATTTTACCTCTCCGGTCGGCTGAGCACCCTACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGA
GTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGA
GGGGGACCGGGCTGATCCTCGACTTGCGCATTATGCCTCTTCGACCGGCTCAGTGCCCACACGCT
CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCC
AGTCTAAGATCAGACCA
Found at i:21521609 original size:26 final size:26
Alignment explanation
Indices: 21521572--21521624 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21521562 GTTGGCTTAG
21521572 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
*
21521598 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
21521624 G
1 G
21521625 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:21522303 original size:26 final size:26
Alignment explanation
Indices: 21522273--21522324 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21522263 GTTGACTTAG
21522273 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21522299 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21522325 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21522601 original size:159 final size:158
Alignment explanation
Indices: 21522335--21522630 Score: 373
Period size: 159 Copynumber: 1.9 Consensus size: 158
21522325 ATCGGATCGG
*
21522335 ACCGATGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGACCGGGCCGATCTCTGGCTTGCGC
1 ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGACCGGGCCGATCTCTGGCTTGCGC
** * * * *
21522400 ATTCTGCCTCTATGGTCGGTTGAGCGCCCACACGCTTGTTTCATGGGCTGGCTTACGCATACAGA
66 ATTCTGCCTCTACCGTCAGCTGAGCGCCCACACGCTTATTTCATGGGCTGGCTTACGCACACAGA
21522465 GTTCATTTCACGTCTAAGCCCCAGCCGT
131 GTTCATTTCACGTCTAAGCCCCAGCCGT
* * * * * *
21522493 ACCGAGGGTTGTGGCAGCAGGATCTGCAGCACGCAGAGTGGGATCGGGTCGATC-CTCGGCTTGT
1 ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA-AGGGACCGGGCCGATCTCT-GGCTTGC
* * * *
21522557 GCATTGTGCCTCT-CCGTCCAGCTGAGCGCCCGCACG-TTCATTTCATGGGTTGGCTTAGGCACA
64 GCATTCTGCCTCTACCGT-CAGCTGAGCGCCCACACGCTT-ATTTCATGGGCTGGCTTACGCACA
*
21522620 CGGAGTTCATT
127 CAGAGTTCATT
21522631 CCATGTTTAA
Statistics
Matches: 116, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
158 40 0.34
159 76 0.66
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (158 bp):
ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGACCGGGCCGATCTCTGGCTTGCGC
ATTCTGCCTCTACCGTCAGCTGAGCGCCCACACGCTTATTTCATGGGCTGGCTTACGCACACAGA
GTTCATTTCACGTCTAAGCCCCAGCCGT
Found at i:21523066 original size:355 final size:352
Alignment explanation
Indices: 21522243--21523693 Score: 1145
Period size: 355 Copynumber: 4.2 Consensus size: 352
21522233 CGACTGAGCA
21522243 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
* * * * * *
21522308 GTTCTTTCCCAGTCTAA-ATCGGATCGGACCGATGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
66 GTTCATTCCCAGTCTAAGATCGAACCAGACCGATGGTTACGGCAGCAGGATCGGCAGCACGCAGG
* * * ** ** * *
21522372 AGGGACCGGGCCGATCTCTGGCTTGCGCATTCTGCCTCTAT-GGTCGGTTGAGCGCCCACACGCT
131 GGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCT-TCGATCGACTGAGCGCCTGCTCGCC
* * * * ** * * * *
21522436 TGTTTCATGGGCTGGCTTACGCATACAGAGTTCATTTCACGTCTAAGCCCCAGCCGTACCGAGGG
195 AGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
* * * *
21522501 TTGT-G-GC--A---GCA--GGATCTGCAGCACGCAGAGTGGGATCGGGTCGATCCTCGGCTTGT
260 TTGTGGAGCAGACTGGCAGCGGATCTGCAGCACGCAGAGGGGGATCGGCTCGATCCCCGACTTGT
* * *
21522557 GCATTGTGCCTCTCCGTCCAGCTGAGCG
325 GCATTGTACCTCTCCGGCCAGCTGAACG
* * * * * *
21522585 CCCGCACGTTCATTTCATGGGTTGGCTTAGGCACACGGAGTTCAT-TCCATGTTTAAGCATACGG
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGG
* * *
21522649 AGTTCATTCCCAGTCTAAGATTGAACTAGACCGAGGGTTGCGATAGCAAGACCAGCAGCAGGATC
65 AGTTCATTCCCAGTCTAAGATCGAACCAGACCGA----TG-GTTA-C--G----GCAGCAGGATC
* * * * * *
21522714 GACAGCATGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTACCACTTCGACCGACTGAA
118 GGCAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGACTGAG
* * * *
21522779 CGCCTGCTTGCCCGCTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAG
183 CGCCTGCTCGCCAGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
*
21522844 TCGGACCGAGGGTTGTGGTAGCAAGACTGGCAGCGGGATC-GATAGCACGCAGAGGGGGATCAGG
248 TCGGACCGAGGGTTGTGG-AGC-AGACTGGCAGC-GGATCTG-CAGCACGCAGAGGGGGATC-GG
* * * *
21522908 CT-GATCCCCGACTTGTTCATTTTACCTCTCTGGCCGGCTGAACG
308 CTCGATCCCCGACTTGTGCATTGTACCTCTCCGGCCAGCTGAACG
* * * *
21522952 CCCGTACGCTCGTTTCATGGGTTGATTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAGATGGA
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
* * *
21523017 GTTCATTCCTAGTCTAAGATCGAACCAGACCGATGGTTACGGTAGCAGGATCGGTAGCACGCAGG
66 GTTCATTCCCAGTCTAAGATCGAACCAGACCGATGGTTACGGCAGCAGGATCGGCAGCACGCAGG
* * *
21523082 GGGGACCAGACCGATCTCC-GGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCTG-TACGC
131 GGGGACCGGGCCGATC-CCTGGCTTGCGCATTCTGCCTCTTCGATCGACTGAGCGCCTGCT-CGC
* *
21523145 CAGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGG
194 CAGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGG
* * *
21523210 GTTGTGGCAGCGAGACTGGCAGC--A--T-----A--CAGAGGGGGATCGGGC-CGATTCTCGGC
259 GTTGTGG-AGC-AGACTGGCAGCGGATCTGCAGCACGCAGAGGGGGATC-GGCTCGATCCCCGAC
** * * * * * * *
21523263 TTGCCCATTATGCCTCTTCGGTCGGCTCAGCG
321 TTGTGCATTGTACCTCTCCGGCCAGCTGAACG
* * * * * * * * *
21523295 CCTGCTCGCTTGCTCCGTGGGTTGACTTAGGTATACGGAGTTCATCCCCAATCTAAGCATACAGA
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
* * * * * * ** *
21523360 GTGCATTCCCATTCCAAGATCAGATCGA-ATCGA-GGATTGTGACAGCAGGATCGGCAGCACG-A
66 GTTCATTCCCAGTCTAAGATC-GAACCAGACCGATGG-TTACGGCAGCAGGATCGGCAGCACGCA
** * * * * * * * ** * *
21523422 GGGCAGACTGAGTCGAT-CCTCGGCTTGCGTATTTTGCCTC-ACCAGTCGGTTGAGCGCCCGCAC
129 GGGGGGACCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTTCGA-TCGACTGAGCGCCTGCTC
* * * * * *
21523485 ACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGA
192 GCCAGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGA
* * * *
21523550 GGGTTGT-G-GC--A---GCA--GGATCGGCAGCACGCAGAGGGGGA-CTGGGTCAATCCCTGAC
257 GGGTTGTGGAGCAGACTGGCAGCGGATCTGCAGCACGCAGAGGGGGATC-GGCTCGATCCCCGAC
* * * * * * * *
21523605 TTGCGCATTATGCCTCTTCGACCGGCTCAGCG
321 TTGTGCATTGTACCTCTCCGGCCAGCTGAACG
* *
21523637 CCCGCACGCTCGTTTTCA-GGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
1 CCCGCACGCTCG-TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
21523694 ATCGGACTGA
Statistics
Matches: 886, Mismatches: 170, Indels: 106
0.76 0.15 0.09
Matches are distributed among these distances:
333 4 0.00
336 1 0.00
339 2 0.00
340 3 0.00
341 9 0.01
342 267 0.30
343 150 0.17
344 4 0.00
345 1 0.00
347 2 0.00
348 2 0.00
349 1 0.00
351 1 0.00
352 1 0.00
354 2 0.00
355 277 0.31
356 3 0.00
358 2 0.00
359 1 0.00
361 2 0.00
362 3 0.00
363 2 0.00
364 3 0.00
366 1 0.00
367 136 0.15
368 6 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (352 bp):
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCGAACCAGACCGATGGTTACGGCAGCAGGATCGGCAGCACGCAGG
GGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGACTGAGCGCCTGCTCGCCA
GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGT
TGTGGAGCAGACTGGCAGCGGATCTGCAGCACGCAGAGGGGGATCGGCTCGATCCCCGACTTGTG
CATTGTACCTCTCCGGCCAGCTGAACG
Found at i:21523659 original size:159 final size:158
Alignment explanation
Indices: 21523474--21523859 Score: 384
Period size: 159 Copynumber: 2.4 Consensus size: 158
21523464 CAGTCGGTTG
* * * *
21523474 AGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
1 AGCGCCCGCACGCTCGTTTCA-GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACC
* * ** * * *
21523539 AGCCAG-ACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGA-CTGGGTCAATCCCT
65 AGACAGAACTGAGGGTTGCGGCAGCAGGATCCACAGCACACAG-GGGGGACCAGGCT-AATCCCT
* * * *
21523602 GACTTGCGCATTATGCCTCTTCGACCGGCTC
128 GACTTACACATTATACCTCTCCGACCGGCTC
* * *
21523633 AGCGCCCGCACGCTCGTTTTCAGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-AT
1 AGCGCCCGCACGCTCG-TTTCAGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAC
* * * * *
21523696 CGGACTGAACTGAGGGTTGCGGCAGCAGGATCCACAGCATACAGGGTGGACCAGGCTGATCCCTG
64 CAGACAGAACTGAGGGTTGCGGCAGCAGGATCCACAGCACACAGGGGGGACCAGGCTAATCCCTG
* * *
21523761 GCTTACACATTCTACCTCTCCGACCGGCTG
129 ACTTACACATTATACCTCTCCGACCGGCTC
* *
21523791 AGCGCCCGTACGCTCGTTTCGTGGGTTGCTTAGGGCTTAGGCATACGGAGTTCATTCCATGTCTA
1 AGCGCCCGCACGCTCGTTTC--AGG--G-TT--GGCTTAGGCATACGGAGTTCATTCCATGTCTA
21523856 AGCA
59 AGCA
21523860 TACGGGGTTC
Statistics
Matches: 184, Mismatches: 30, Indels: 20
0.79 0.13 0.09
Matches are distributed among these distances:
157 4 0.02
158 54 0.29
159 83 0.45
160 8 0.04
161 1 0.01
162 2 0.01
163 3 0.02
164 28 0.15
165 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
AGCGCCCGCACGCTCGTTTCAGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCA
GACAGAACTGAGGGTTGCGGCAGCAGGATCCACAGCACACAGGGGGGACCAGGCTAATCCCTGAC
TTACACATTATACCTCTCCGACCGGCTC
Found at i:21523869 original size:26 final size:26
Alignment explanation
Indices: 21523831--21523883 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21523821 TAGGGCTTAG
21523831 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
21523857 GCATACGGGGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
21523883 G
1 G
21523884 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:21524590 original size:26 final size:26
Alignment explanation
Indices: 21524560--21524612 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21524550 GTTGACTTAG
21524560 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21524586 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21524612 G
1 G
21524613 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21524903 original size:159 final size:158
Alignment explanation
Indices: 21524586--21525088 Score: 532
Period size: 159 Copynumber: 3.2 Consensus size: 158
21524576 CCCAGTCTAA
* * * * * *
21524586 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGAGGGTTGCGATAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTCCGACAACAGGATCTGC
* * * *
21524650 AGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGACTGAGT-C
65 AGCACGCAGGGGGGATCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGACTCAGTGC
*
21524714 CCTGCACGC-CTGTTTCATGGGTTGGCTTAG
130 CC-GCACGCTC-GTTTCGTGGGTTGGCTTAG
* * * * * * ** * *
21524744 GGATACGGAGTCCATTCCATGTCTATGCTCTGGCCAGACCGAGGGTTGTGGCAACGGGATCTGCA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTCCGACAACAGGATCTGCA
* ** *
21524809 GCACGCAGAGGGGGACCGGGCCGGTCCCCGGCTTATGCATTAC-GCCTCTCTGGCCGGCTCAGTG
66 GCACGCAG-GGGGGATCGGGCCGGTCCCCGGCTTGCGCATT-CTGCCTCTCTGGCCGACTCAGTG
* *
21524873 CCCGCACACTCGTTTCGTGGGTTGACTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** *
21524903 GCATATAGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTCCGACAACAGGATCTAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTCCGACAACAGGATCTGC
* * * * *
21524967 AGCACGCAGGGGGGGATTGGGTCGGTCCCCGACTTGCGCATTCTGCCTCTCTGGCC-ATCTTAGC
65 AGCACGCA-GGGGGGATCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGA-CTCAGT
* * *
21525031 GCCTGCACGTTCGTGTCGTGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
21525062 GCACACGGAGTTCATTCCATGTTTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
21525089 CATGCGGAGT
Statistics
Matches: 279, Mismatches: 56, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 59 0.21
159 208 0.75
160 9 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTCCGACAACAGGATCTGCA
GCACGCAGGGGGGATCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGACTCAGTGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:21525329 original size:196 final size:197
Alignment explanation
Indices: 21524967--21525342 Score: 461
Period size: 196 Copynumber: 1.9 Consensus size: 197
21524957 CAGGATCTAC
** * * *** * *
21524967 AGCACGCAGGGGGGGATTGGGTCGGTCCCCGACTTGCGCATTCTGCCTCTCTGGCCATCTTAGCG
1 AGCACGCAGGGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCAACCAGCTGAGCG
* * * * * * ** *
21525032 CCTGCACGTTCGTGTCGTGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTTTAAGCATGCGGA
66 CCCGCACGATCGTGTCGTGGGTTGACTTAAGCACACGAAGTTCATCCCATGCCTAAGCATACGGA
* *
21525097 GTTCATTCCCAGTCAAAGATTAAACCGGACTGAGGGTTGCGGTAGCAGGACCAGTAATAGGATCG
131 GTTCATTCCCAGTCAAAGATCAAACCGGACTGAGGGTTGCGGCAGCAGGACCAGTAATAGGATCG
21525162 GT
196 GT
* *
21525164 AGCACGCA-GGGGGGACCGGGTCGATCCCC-AGCTTACGCATTCTGCCTCTCCAACCGGCTGAGT
1 AGCACGCAGGGGGGGACCGGGTCGATCCCCGA-CTTACGCATTCTGCCTCTCCAACCAGCTGAGC
* *
21525227 GCCCGCACGATCGTTTCGTGGGTTGACTTAAGCATACGAAGTTCATCCCCAT-CCTAAGCATACG
65 GCCCGCACGATCGTGTCGTGGGTTGACTTAAGCACACGAAGTTCAT-CCCATGCCTAAGCATACG
* * * *
21525291 GAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTGCGGCAGCAGGA
129 GAGTTCATTCCCAGTCAAAGATCAAACCGGACTGAGGGTTGCGGCAGCAGGA
21525343 TATGCAGCAC
Statistics
Matches: 149, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
195 1 0.01
196 136 0.91
197 12 0.08
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (197 bp):
AGCACGCAGGGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCAACCAGCTGAGCG
CCCGCACGATCGTGTCGTGGGTTGACTTAAGCACACGAAGTTCATCCCATGCCTAAGCATACGGA
GTTCATTCCCAGTCAAAGATCAAACCGGACTGAGGGTTGCGGCAGCAGGACCAGTAATAGGATCG
GT
Found at i:21525587 original size:159 final size:158
Alignment explanation
Indices: 21525324--21525627 Score: 378
Period size: 159 Copynumber: 1.9 Consensus size: 158
21525314 AGATCGGATT
* **
21525324 GAGGGTTGCGGCAGCAGGATATGCAGCACGCAAGGGGGACCGGGCTGATCCTCGGCTTGTGCATT
1 GAGGGTTGCGGCAGCAGGACATGCAGCACGCAAGGGGGACCGGGCTGATCCTCAACTTGTGCATT
* * * * * * * *
21525389 CTGCCTCTCCATCCGGCAGAGCCCCCGCACATCCGTTTCGTGGGTTGGCTTAGCCATAGGGAGTT
66 ATGCCTCTCCAACCGGCACAGCACCCACACATCCATTTCGTGGGTTGACTTAGCCATACGGAGTT
*
21525454 CATTCCATGTCTAAGCCCCAGCCAGACC
131 CATTCCAAGTCTAAGCCCCAGCCAGACC
* * * * *
21525482 GAGGGTTGTGGCAGCGGGACA-GACAGCACGTAGAGGGGGACCGGGTTGATCCTCAACTTGTGTA
1 GAGGGTTGCGGCAGCAGGACATG-CAGCACGCA-AGGGGGACCGGGCTGATCCTCAACTTGTGCA
* * **
21525546 TTATGCCTCTCCAACCGGCTCAGCACCCACAC-GCTCATTTCGTGGGTTGACTTAGGTATACGGA
64 TTATGCCTCTCCAACCGGCACAGCACCCACACATC-CATTTCGTGGGTTGACTTAGCCATACGGA
21525610 GTTCATTCCAAGTCTAAG
128 GTTCATTCCAAGTCTAAG
21525628 ATTGGACCGG
Statistics
Matches: 122, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
157 1 0.01
158 27 0.22
159 94 0.77
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GAGGGTTGCGGCAGCAGGACATGCAGCACGCAAGGGGGACCGGGCTGATCCTCAACTTGTGCATT
ATGCCTCTCCAACCGGCACAGCACCCACACATCCATTTCGTGGGTTGACTTAGCCATACGGAGTT
CATTCCAAGTCTAAGCCCCAGCCAGACC
Found at i:21525832 original size:698 final size:692
Alignment explanation
Indices: 21524486--21526502 Score: 2434
Period size: 698 Copynumber: 2.9 Consensus size: 692
21524476 TACCACCCGT
* * *
21524486 TCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGTGCCCGCACGCTCAG-TTCGCGG
1 TCGATCCCC-GCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTC-GTTTCGTGG
21524550 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
64 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
** *
21524615 CAGATCGGACCGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGGGGGGATCGAGCCGATCCCCG
129 CAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAAGGGGGATCGAGCCGATCCCCG
* * * * *
21524680 GCTTGCGCATTCTGCCTCTCTGACCGACTGAGTCCCTGCACGCCTGTTTCATGGGTTGGCTTAGG
194 GCTTGCGCATTCTGCCTCTC-CACCGGCTGAGCCCCCGCAC-CCCGTTTCATGGGTTGGCTTAGG
* * * * * ** * *
21524745 GATACGGAGTCCATTCCATGTCTATGCTCTGGCCAGACCGAGGGTTGTGGCAACGGGATCTGCAG
257 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGA-CAGCAG
* * * * * *
21524810 CACGCAGAGGGGGACCGGGCCGGTCCCCGGCTTATGCATTACGCCTCTCTGGCCGGCTCAGTGCC
321 CACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGGCTCAGCGCC
* * * *
21524875 CGCACACTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCAG
386 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATT-CCAGTCTAAGATCGGACCGG
* * * * * *
21524940 ACCGAGGGTTCCGACAACAGGATCTACAGCACGCAGGGGGGGATTGGGTCGGTCCCC-GACTTGC
450 ACCAAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGGGATCGGGCCGGTCCCCAG-CTTGC
* * ** * * * *
21525004 GCATTCTGCCTCTCTGGCCATCTTAGCGCCTGCACGTTCGTGTCGTGGGTTGGCTTAGGCACACG
514 GCATTCTGCCTCTCCGGTCGGCTAAGCGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATAC-
* ** * *
21525069 GAGTTCATTCCATGTTTAAGCATGCGGAGTTCATTCCCAGTCAAAGATTAAACCGGACTGAGGGT
578 GAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCAAAGATCAAACCGGACCGAGGGT
* ** * *
21525134 TGCGGTAGCAGGACCAGTA-ATAGGATCGGTAGCACGCAGGGGGGACCGGG
643 TGCGGTAGCAGGACCAGCAGAT-GGATCGACAGCACACAGGGGGGACCGAG
* *** *
21525184 TCGATCCCCAGCTTACGCATTCTGCCTCTCCAACCGGCTGAGTGCCCGCACGATCGTTTCGTGGG
1 TCGATCCCC-GCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGG
* *
21525249 TTGACTTAAGCATACGAAGTTCATCCCCA-TCCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
65 TTGACTTAGGCATACGGAGTTCATCCCCAGT-CTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
** ** * * * *
21525313 CAGATCGGATTGAGGGTTGCGGCAGCAGGATATGCAGCACGCAAGGGGGACCGGGCTGATCCTCG
129 CAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAAGGGGGATCGAGCCGATCCCCG
* * * * *
21525378 GCTTGTGCATTCTGCCTCTCCATCCGGCAGAGCCCCCGCACATCCGTTTCGTGGGTTGGCTTAGC
194 GCTTGCGCATTCTGCCTCTCCA-CCGGCTGAGCCCCCGCAC-CCCGTTTCATGGGTTGGCTTAGG
21525443 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACAGACAG
257 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACAG-CAG
* ** * ** * * *
21525508 CACGTAGAGGGGGACCGGGTTGATCCTCAACTTGTGTATTATGCCTCTCCAACCGGCTCAGCACC
321 CACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGGCTCAGCGCC
* * * * *
21525573 CACACGCTCATTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCAAGTCTAAGATTGGACCGG
386 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCC-AGTCTAAGATCGGACCGG
* ** * *
21525638 ACCAAGGGCTACGGTAGCAGGATCGATAGCATGCAGGGGGGGATCGGGCCGGTCCCCAGCTTGCG
450 ACCAAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGGGATCGGGCCGGTCCCCAGCTTGCG
* * * *
21525703 CATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACAG
515 CATTCTGCCTCTCCGGTCGGCTAAGCGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATAC-G
* **
21525768 AGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGT-ATAAGATCAGATTGGACCGAGGGT
579 AGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCA-AAGATCAAACCGGACCGAGGGT
* * * *
21525832 TGCGGTAGTAGGACCAGCAGCTGGATCGACAGCCCACATGGGGGACCGAG
643 TGCGGTAGCAGGACCAGCAGATGGATCGACAGCACACAGGGGGGACCGAG
* * * *
21525882 TCGATCCCCGACTTGTGCATTCTACCTCTCCGGTCGGTTGGGTGCCCGCACGCTCGTTTCGTGGG
1 TCGATCCCCG-CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGG
* * * *
21525947 TTGACTTAGGTATACGGAGTTCATCCTCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATC
65 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * * *
21526012 AAACCAGACCAAAGGTTACGGCAGCAGGATCGGTAGCACG-TAGGGGGATCGAGCCGATCCCCGA
130 AGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAAGGGGGATCGAGCCGATCCCCGG
* * *
21526076 CTTGCGCATTCTGCCTCTCCAGCTGGTTGAGCACCCGCACGCCCGTTT-ATGGGTTGGCTTAGGC
195 CTTGCGCATTCTGCCTCTCCA-CCGGCTGAGCCCCCGCAC-CCCGTTTCATGGGTTGGCTTAGGC
* * * * *
21526140 ATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGGTAGCGGGACCGGCAGC
258 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGA-CAGCAGC
* * * * *
21526205 ACGCAGAGGGGGACTGGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCGCCC
322 ACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGGCTCAGCGCCC
* * *
21526270 GCACGCTCGTTTTGTGGGTTGACTTATGCATATGGAGTTCATTCTCAGTCTAAGATCGGACCGAA
387 GCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTC-CAGTCTAAGATCGGACCGGA
* * ** * *
21526335 CCAAGGGTTGCGACAGCAGGATCGACAGCACGTA-GGGGGGATCGGGCCAAT-CCCAACTTGTGC
451 CCAAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGGGATCGGGCCGGTCCCCAGCTTGCGC
* * *
21526398 ATTCTGCCTCTCCGGTCGGCTAAGCGCCCGTACGTTCGTTTCATGGGTTGGCTTAGGCGTACGAT
516 ATTCTGCCTCTCCGGTCGGCTAAGCGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGA-
21526463 GTTCATTCCATGTCTAAGCATACT-GAGTTCATTCCCAGTC
580 GTTCATTCCATGTCTAAGCATA-TGGAGTTCATTCCCAGTC
21526503 TAAAATTTTG
Statistics
Matches: 1111, Mismatches: 193, Indels: 33
0.83 0.14 0.02
Matches are distributed among these distances:
693 2 0.00
694 102 0.09
695 16 0.01
696 204 0.18
697 70 0.06
698 714 0.64
699 3 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (692 bp):
TCGATCCCCGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
GATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAAGGGGGATCGAGCCGATCCCCGGC
TTGCGCATTCTGCCTCTCCACCGGCTGAGCCCCCGCACCCCGTTTCATGGGTTGGCTTAGGCATA
GGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACAGCAGCACGC
AGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCAGTCTAAGATCGGACCGGACCAAG
GGTTACGACAGCAGGATCGACAGCACGCAGGGGGGGATCGGGCCGGTCCCCAGCTTGCGCATTCT
GCCTCTCCGGTCGGCTAAGCGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGAGTTCAT
TCCATGTCTAAGCATATGGAGTTCATTCCCAGTCAAAGATCAAACCGGACCGAGGGTTGCGGTAG
CAGGACCAGCAGATGGATCGACAGCACACAGGGGGGACCGAG
Found at i:21526006 original size:26 final size:26
Alignment explanation
Indices: 21525958--21526008 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
21525948 TGACTTAGGT
* *
21525958 ATACGGAGTTCATCCTCAGTCTAAGC
1 ATACGAAGTTCATCCTCAATCTAAGC
21525984 ATACGAAGTTCATTCC-CAATCTAAG
1 ATACGAAGTTCA-TCCTCAATCTAAG
21526009 ATCAAACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCTCAATCTAAGC
Found at i:21526271 original size:158 final size:156
Alignment explanation
Indices: 21526019--21526481 Score: 423
Period size: 159 Copynumber: 2.9 Consensus size: 156
21526009 ATCAAACCAG
* * * * ** * * *
21526019 ACCAAAGGTTACGGCAGCAGGATCGGTAGCACGTA-GGGGGATCGAGCCGATCCCCGACTTGCGC
1 ACCAAGGGTTGCGACAGCAGGACCGACAGCACGCAGGGGGGATCGGGCCAATCCCCGACTTGCGC
* * * * * *
21526083 ATTCTGCCTC-TCCAGCTGGTTGAGCACCCGCACGCCCGTTTATGGGTTGGCTTAGGCATAGGGA
66 ATTCTGCCTCTTCGATC-GGCTAAGCGCCCGCACGCTCGTTTATGGGTTGGCTTAGGCATA-GGA
*
21526147 GTTCATTCCATGTCTAAGCCCCAACCGG
129 GTTCATTCCATGTCTAAGCCCCAACCGA
* * * ** * * *
21526175 ATCGAGGGTTGTGGTAGCGGGACCGGCAGCACGCAGAGGGGGA-CTGGGCCAATCCCCGGCTTGC
1 ACCAAGGGTTGCGACAGCAGGACCGACAGCACGCAG-GGGGGATC-GGGCCAATCCCCGACTTGC
* * * * *
21526239 GCATTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTATGCATATG
64 GCATTCTGCCTCTTCGATCGGCTAAGCGCCCGCACGCTCG-TTTATGGGTTGGCTTAGGCATA-G
** **
21526304 GAGTTCATTCTCA-GTCTAAGATCGGACCGA
127 GAGTTCATTC-CATGTCTAAGCCCCAACCGA
* * * *
21526334 ACCAAGGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCAAT-CCCAACTTGTGC
1 ACCAAGGGTTGCGACAGCAGGACCGACAGCACGCAGGGGGGATCGGGCCAATCCCCGACTTGCGC
* * * * * *
21526398 ATTCTGCCTCTCCGGTCGGCTAAGCGCCCGTACGTTCGTTTCATGGGTTGGCTTAGGCGTACGAT
66 ATTCTGCCTCTTCGATCGGCTAAGCGCCCGCACGCTCGTTT-ATGGGTTGGCTTAGGCATAGGA-
21526463 GTTCATTCCATGTCTAAGC
129 GTTCATTCCATGTCTAAGC
21526482 ATACTGAGTT
Statistics
Matches: 244, Mismatches: 53, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
156 32 0.13
157 72 0.30
158 64 0.26
159 74 0.30
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
ACCAAGGGTTGCGACAGCAGGACCGACAGCACGCAGGGGGGATCGGGCCAATCCCCGACTTGCGC
ATTCTGCCTCTTCGATCGGCTAAGCGCCCGCACGCTCGTTTATGGGTTGGCTTAGGCATAGGAGT
TCATTCCATGTCTAAGCCCCAACCGA
Found at i:21526467 original size:157 final size:157
Alignment explanation
Indices: 21525982--21526480 Score: 469
Period size: 157 Copynumber: 3.2 Consensus size: 157
21525972 CTCAGTCTAA
* * *
21525982 GCATA-CGAAGTTCATTCCCA-ATCTAAGATCAAACC-AGACCAAAGGTTACGGCAGCAGGATCG
1 GCATAGCG-AGTTCATT-CCATGTCTAAGATCAAACCGA-ACCAAGGGTTGCGGCAGCAGGATCG
* * * * * *
21526044 GTAGCACGTA-GGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAG-CTGGTTGAG
63 GCAGCACGTAGGGGGGATCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGTC-GGCTAAG
* *
21526107 CACCCGCACGCCCGTTTATGGGTTGGCTTAG
127 CGCCCGCACGCTCGTTTATGGGTTGGCTTAG
* ** * * * * * * * *
21526138 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGGTAGCGGGACCGGCA
1 GCATAGCGAGTTCATTCCATGTCTAAGATCAAACCGAACCAAGGGTTGCGGCAGCAGGATCGGCA
* * * * * *
21526203 GCACGCAGAGGGGGA-CTGGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCG
66 GCACGTAG-GGGGGATC-GGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCG
* * *
21526267 CCCGCACGCTCGTTTTGTGGGTTGACTTAT
129 CCCGCACGCTCG-TTTATGGGTTGGCTTAG
** * *
21526297 GCATATG-GAGTTCATTCTCA-GTCTAAGATCGGACCGAACCAAGGGTTGCGACAGCAGGATCGA
1 GCATA-GCGAGTTCATTC-CATGTCTAAGATCAAACCGAACCAAGGGTTGCGGCAGCAGGATCGG
* *
21526360 CAGCACGTAGGGGGGATCGGGCCAAT-CCCAACTTGTGCATTCTGCCTCTCCGGTCGGCTAAGCG
64 CAGCACGTAGGGGGGATCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCG
* *
21526424 CCCGTACGTTCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTT-ATGGGTTGGCTTAG
*
21526454 GCGTA-CGATGTTCATTCCATGTCTAAG
1 GCATAGCGA-GTTCATTCCATGTCTAAG
21526481 CATACTGAGT
Statistics
Matches: 271, Mismatches: 57, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
155 3 0.01
156 56 0.21
157 73 0.27
158 66 0.24
159 70 0.26
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATAGCGAGTTCATTCCATGTCTAAGATCAAACCGAACCAAGGGTTGCGGCAGCAGGATCGGCA
GCACGTAGGGGGGATCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCC
CGCACGCTCGTTTATGGGTTGGCTTAG
Found at i:21527219 original size:26 final size:26
Alignment explanation
Indices: 21527183--21527234 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21527173 TTGACTTAGA
21527183 CATACGGAGTTCA-TCCCTAGTCTAAG
1 CATACGGAGTTCATTCCC-AGTCTAAG
21527209 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
21527235 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:21527682 original size:158 final size:156
Alignment explanation
Indices: 21527208--21527709 Score: 533
Period size: 158 Copynumber: 3.2 Consensus size: 156
21527198 CCTAGTCTAA
** * * *
21527208 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGGTCGAGGGTTACGACAGTAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGACT-GAGGGTTACGATAGCAGGATCGACA
* * * *
21527273 GCAAGCAGGGGGGACCAGGTCAATCCCCGTCTTGCACATTCTACCTCTCCGATCGGCTGAGCGCC
64 GCAAGCAGGGGGGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
21527338 CGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** ** * * * * * *
21527366 GCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGTCGGACCT-AGGGTTATGGTAGCGGGACCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCA-ACCGA-CTGAGGGTTACGATAGCAGGATCGAC
* * * * * * * * *
21527430 AGCACGCAGAGGGGCACCAGGCCGATCCCCGACTTGAGCATTATGCCTCTCCGGTCGGTTCAGCA
63 AGCAAGCAG-GGGGGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
*
21527495 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
21527525 GCATACGAAATTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTACGATAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AACC-GACTGAGGGTTACGATAGCAGGATCGACA
* * * * * *
21527590 CCAAGCAGGGGGGACCGGGTCGGTCCCCGACTTGCGCATTCTGCTTCTTCGA-CTGGCTGAGTGC
64 GCAAGCAGGGGGGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATC-GGCTGAGCGC
*
21527654 CCGCACGCTCGTTTCATGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
21527683 GCATACGGAGTTCATT-CCACGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
21527710 CATACGGAGT
Statistics
Matches: 273, Mismatches: 63, Indels: 16
0.78 0.18 0.05
Matches are distributed among these distances:
157 4 0.01
158 141 0.52
159 127 0.47
160 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAACCGACTGAGGGTTACGATAGCAGGATCGACAGC
AAGCAGGGGGGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:21527713 original size:26 final size:26
Alignment explanation
Indices: 21527683--21527735 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21527673 GTTGGCTTAG
21527683 GCATACGGAGTTCATT-CCACGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21527709 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21527735 G
1 G
21527736 ATTAAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21528090 original size:26 final size:26
Alignment explanation
Indices: 21528051--21528103 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21528041 GTTGACTTAG
21528051 GCATACGGAATTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
* *
21528077 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
21528103 G
1 G
21528104 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:21529308 original size:26 final size:26
Alignment explanation
Indices: 21529272--21529324 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21529262 GTTGACTTAG
*
21529272 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
21529298 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21529324 G
1 G
21529325 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21535698 original size:170 final size:170
Alignment explanation
Indices: 21535395--21535706 Score: 401
Period size: 170 Copynumber: 1.8 Consensus size: 170
21535385 TCAGCTTGCA
** * * *
21535395 CATTCTACCTCTCTGGCCGGCTGAGCACCCACATGCTCGTTTCATGGGTTGGCTTAGGCATACGA
1 CATTCTACCTCTCTAACCGGCTAAGCACCCACACGCTCGTTTCATGGGTTAGCTTAGGCATACGA
* * ** * **
21535460 AGTTCATTCCCAGTCTAAGATCAAACCAGATTGAGGGTTGCGATAGCAGAACTAGTAGCAGGATC
66 AGTTCATTCCAAGTCTAAGACCAAACCAGACCGAGGGTTGCGATAGCAGAACCAACAGCAGGATC
21535525 GACAGCACGCAGGGTGGATCGAGCTGATCCCCGGCTTGTG
131 GACAGCACGCAGGGTGGATCGAGCTGATCCCCGGCTTGTG
* * * *
21535565 CATTCTGCCTCTCTAACCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGG
1 CATTCTACCTCTCTAACCGGCTAAGCACCCACACGCTCGTTTCATGGGTTAGCTTAGGCATACGA
* * * * * *
21535630 AGTTCATTCCAAGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGCAGGACCAACAG-AGGTAT
66 AGTTCATTCCAAGTCTAAGACCAAACCAGACCGAGGGTTGCGATAGCAGAACCAACAGCAGG-AT
*
21535694 CGACAGCATGCAG
130 CGACAGCACGCAG
21535707 AGGGGGACCA
Statistics
Matches: 118, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
169 3 0.03
170 115 0.97
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.22
Consensus pattern (170 bp):
CATTCTACCTCTCTAACCGGCTAAGCACCCACACGCTCGTTTCATGGGTTAGCTTAGGCATACGA
AGTTCATTCCAAGTCTAAGACCAAACCAGACCGAGGGTTGCGATAGCAGAACCAACAGCAGGATC
GACAGCACGCAGGGTGGATCGAGCTGATCCCCGGCTTGTG
Found at i:21536133 original size:159 final size:158
Alignment explanation
Indices: 21535909--21536336 Score: 420
Period size: 159 Copynumber: 2.7 Consensus size: 158
21535899 ATGCAGTAGG
* * * * * * * *
21535909 GACCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTTCGGCCGGTTGAACGCCTGCACACCCGTT
1 GACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCCGGCT-AACGCCCGCACGCTCGTT
* * * *
21535974 TCGTGGGTTGGCTTAGGCAAAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGACTGAGGGCTG
65 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGGCTG
* *
21536038 TGGCA-ATGGGACCGGCAGCACGCAGAGGGG-
130 TGGCACA-AGG-CCGACAGCACGCAG-GGGGA
* * **
21536068 GATCGGGCCGATCCTCGGCTTGCACATTATGCCTCTTCGGTTGGCTCAACGCCCGCACGCTCGTT
1 GACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCCGGCT-AACGCCCGCACGCTCGTT
* * * * * * *
21536133 TCGCGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTT
65 TCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACTGAGGGCT
* *
21536196 GTGGCAGCAAGGTCGACAGCACGTAGGGGGA
129 GTGGCA-CAAGGCCGACAGCACGCAGGGGGA
* * * *
21536227 GACCGGGCCGAT-CTCCGACTTGCGTATTTTGCCTC-TCTGGCCGGCTAAGCGCCCGCGCGCTCG
1 GACCGGGCCGATCCT-CGGCTTGCGCATTATGCCTCTTC-GGCCGGCTAA-CGCCCGCACGCTCG
* *
21536290 TTTCGTTGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
63 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
21536337 TACAGAGTTC
Statistics
Matches: 217, Mismatches: 42, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
158 16 0.07
159 194 0.89
160 6 0.03
161 1 0.00
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (158 bp):
GACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCCGGCTAACGCCCGCACGCTCGTTT
CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGGCTGT
GGCACAAGGCCGACAGCACGCAGGGGGA
Found at i:21536344 original size:26 final size:26
Alignment explanation
Indices: 21536308--21536360 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21536298 GTTAGCTTAG
*
21536308 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
21536334 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
21536360 G
1 G
21536361 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:21537552 original size:158 final size:156
Alignment explanation
Indices: 21537065--21537566 Score: 449
Period size: 158 Copynumber: 3.2 Consensus size: 156
21537055 CCTAGTCTAA
* ** **
21537065 GCATATGGAGTTCATTCCTAGTCTAAGATCGGA-CAGGACCGAGGGTTGCAACAGCAACATCGAC
1 GCATATGGAGTTCATTCC-AGTCTAAGATCAGATCA-GACCGAGGGTT-CAGTAGCAGGATCGAC
* * * *
21537129 AGCACGAAGGGGGGA-CTGGGTCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGTCGACCAAGCG
63 AGCACGAAGGGGGGATC-GGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTAAGCG
* * * * *
21537193 CCGGTACCCCCGTTTCATGGGTTGGCTTAG
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * *
21537223 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTT--GTGGCAGCGAGACCA
1 GCATATGGAGTTCATTCCA-GTCTAAG-ATCAGATCAGACCGAGGGTTCAGTAGCAG-GA-TCGA
* * * * * *
21537285 GCAGCACGCAGAGGGGGATTGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCTGGCCGGCTCAG
62 -CAGCACGAAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTAAG
* * * * *
21537350 TGCCCGCATGCTCATTTTGTGGGTTGACTTAG
125 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*** * *
21537382 GCATACAAAGTTCGTTTCCAATCTAAGATCAGATCAGA-CGAGGGTTACAGTAGCAGGATCGACA
1 GCATATGGAGTTC-ATTCCAGTCTAAGATCAGATCAGACCGAGGGTT-CAGTAGCAGGATCGACA
* * * * * *
21537446 GCACGTAGGGGCGGATCGGGCCTATCCCCGGCTTACGCATTCTACCTCTCCGGTCGGCTGAGCGC
64 GCACGAAGGGG-GGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTAAGCGC
21537511 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
21537540 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCA-GTCTAAG
21537567 CCCCAGTTGA
Statistics
Matches: 266, Mismatches: 63, Indels: 30
0.74 0.18 0.08
Matches are distributed among these distances:
155 3 0.01
156 1 0.00
157 11 0.04
158 148 0.56
159 90 0.34
160 7 0.03
161 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATATGGAGTTCATTCCAGTCTAAGATCAGATCAGACCGAGGGTTCAGTAGCAGGATCGACAGC
ACGAAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTAAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:21537741 original size:26 final size:26
Alignment explanation
Indices: 21537711--21537763 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21537701 GTTGACTTAG
21537711 GCATAT-AGAGGTCATCCCCAGTCTAA
1 GCATATGA-AGGTCATCCCCAGTCTAA
* *
21537737 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGGTCATCCCCAGTCTAA
21537763 G
1 G
21537764 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATATGAAGGTCATCCCCAGTCTAA
Found at i:21538156 original size:355 final size:348
Alignment explanation
Indices: 21537433--21538286 Score: 877
Period size: 343 Copynumber: 2.4 Consensus size: 348
21537423 GGGTTACAGT
* * * *
21537433 AGCAG-GATCGACAGCACGTAGGGGCGGATCGGGCCTATCCCCGGCTTACGCATTCTACCTCTCC
1 AGCAGAGATCGACAGCACGCAGGGG-GGATCGGACCGATCCCCGGCTTGCGCATTCTACCTCTCC
* *
21537497 GGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGT
65 GGACGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
** * * *
21537562 CTAAGCCCCAGTTGAACTGAGGGTTGTGGCAGCAGGACCGGCAGTGGGATCGATAGCATGCAGAG
130 CTAAGCCCCAGCGGAACTAAGGGTTGT-G--G-AGGA----CAGTGGGATCGACAGCACGCAGAG
*** ** * *
21537627 GGGGATCGGGCCGATCCCCAGCTTGTGCATTATGTCTCTCCGACCGGCTGAGTGCCCGCATGCTC
187 GGGGATCAAACCGATCCCCAGCTTACGCATTATGTCTCTCCGACCGGCTGAGTGCCCGCACGCCC
* *
21537692 GTTTCATGGGTTGACTTAGGCATATAGAGGTCATCCCCAGTCTAAGCATATGAAGTTCATTCCCA
252 ATTTCATGGGTTGACTTAGGCATACAGAGGTCATCCCCAGTCTAAGCATATGAAGTTCATTCCCA
* * ** *
21537757 GTCTAAGATCAGACTAGATTGAGGGTTGTGAC
317 GTCTAAGATCAGACCAAACCGAGGGTTGGGAC
* * *
21537789 AGCAGA-ATCGACAGCATGCAGGGGGGATCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCCG
1 AGCAGAGATCGACAGCACGCAGGGGGGATCGGACCGATCCCCGGCTTGCGCATTCTACCTCTCCG
* * * * *
21537853 GCCGGCTGAGCGCCCGTATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
66 GACGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* * * * *
21537918 TAAGCCTCAGCGGAACTAAGGGTTGT-G-GTA-A-TGGGATCGGCAGCACGTAGATGGGGATCAA
131 TAAGCCCCAGCGGAACTAAGGGTTGTGGAGGACAGTGGGATCGACAGCACGCAGAGGGGGATCAA
* * * * *
21537979 ACTGATCCCC-GACTTACGCATTAT-TCCTCTCCGGCTGGCTTAGTGCCCGCACGCCCATTTCGT
196 ACCGATCCCCAG-CTTACGCATTATGT-CTCTCCGACCGGCTGAGTGCCCGCACGCCCATTTCAT
* * * * * *
21538042 GGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGTATATGGAGTTCATTCCCAGTCTAA
259 GGGTTGACTTAGGCATACAGAGGTCATCCCCA-GTCTAAGCATATGAAGTTCATTCCCAGTCTAA
*
21538106 GATCGGACCAAACCGAGGGTTGCGGCAAC
323 GATCAGACCAAACCGAGGGTTG-GG--AC
*
21538135 AGGACCAGCAACAAGATCGACAGCACGCA-GGGGGATC-GAGCCGATCCCCGGCTTGCACATTCT
1 A-G--CAG-----AGATCGACAGCACGCAGGGGGGATCGGA-CCGATCCCCGGCTTGCGCATTCT
* ** * *
21538198 ACCTCTCC-GACGGACTGAGCTCTTGCACGCTCGTTTCATGGGTTGGCTCAGGCATACGGAGTTC
57 ACCTCTCCGGACGG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
*
21538262 ATTCAATGTCTAAGCCCCAGTCGGA
121 ATTCCATGTCTAAGCCCCAG-CGGA
21538287 CTGAGGATTA
Statistics
Matches: 415, Mismatches: 64, Indels: 39
0.80 0.12 0.08
Matches are distributed among these distances:
342 5 0.01
343 141 0.34
344 2 0.00
346 3 0.01
347 1 0.00
349 5 0.01
351 1 0.00
353 6 0.01
354 96 0.23
355 134 0.32
356 21 0.05
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (348 bp):
AGCAGAGATCGACAGCACGCAGGGGGGATCGGACCGATCCCCGGCTTGCGCATTCTACCTCTCCG
GACGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCCCCAGCGGAACTAAGGGTTGTGGAGGACAGTGGGATCGACAGCACGCAGAGGGGGATCAA
ACCGATCCCCAGCTTACGCATTATGTCTCTCCGACCGGCTGAGTGCCCGCACGCCCATTTCATGG
GTTGACTTAGGCATACAGAGGTCATCCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGAT
CAGACCAAACCGAGGGTTGGGAC
Found at i:21538824 original size:26 final size:26
Alignment explanation
Indices: 21538788--21538840 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21538778 GTTAACTTAG
21538788 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
*
21538814 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21538840 G
1 G
21538841 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21539876 original size:26 final size:26
Alignment explanation
Indices: 21539846--21539898 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21539836 GTTGACTTAG
*
21539846 GCATACGGAGTTCATACCTAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
* *
21539872 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
21539898 G
1 G
21539899 ATCAAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:21540925 original size:26 final size:26
Alignment explanation
Indices: 21540896--21540948 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21540886 GTTGACTTAG
21540896 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21540922 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21540948 G
1 G
21540949 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21542379 original size:26 final size:26
Alignment explanation
Indices: 21542343--21542393 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
21542333 TTGACTTAGG
21542343 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
*
21542369 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
21542394 GATTGAATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:21542842 original size:367 final size:368
Alignment explanation
Indices: 21542220--21542954 Score: 902
Period size: 367 Copynumber: 2.0 Consensus size: 368
21542210 AGTATGACCA
* * * *
21542220 GTAGTAGGATTGACAGCACGCAGGGAGGGACCAAGTCGATCCTCGGCTTACGCATTCTACCTCTC
1 GTAGTAGGATCGACAGCACGCAGAGAGGGACCAAGTCGATCCCCGGCTTACGCATTATACCTCTC
* * * * * * * **
21542285 CGATCGGCCTCTTCGACTGGCTGAGCGCCCGCACGCTTGTTTTATGGGTTGACTTAGGCATACGG
66 CGACCGGCCTCTCCGACTGACTGAGCACCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACAA
* * *
21542350 AGTTCATCCCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATTGAATCGGATCGAGGGTT
131 AGGTCATCCCCAGTCTAACCATACGAAGTTCATTCCCAGTCTAAGATTGAACCGGATCGAGGGTT
* ** * ** *
21542415 GCGGCAGCAGGATCGACAGCATGTAGGGGGGATTGGGCTGATCCCCAGCTTGTACATTCTGCCTC
196 ACGGCAGCAGGATCGACAGCATACAGGGGGGATCGAACTGATCCCCAGCTTGCACATTCTGCCTC
** ** * * * * *
21542480 TCCGGCCAGCTGAGTGCTTGCACGCTCGTTTTATGCG-TTGGCTTAGGTATACAGAGTTCATTCC
261 TCCGGCCAGCTGAAAGCCCGCACGCCCATTTCATG-GTTTCGCTTAGGCATACAGAGTTCATTCC
** *
21542544 ATGTCTAAGCCCCAGTTGAACCGAGGGTTGTGGCAGCAGGATCG
325 ATGTCTAAGCCCCAGCGGAACCAAGGGTTGTGGCAGCAGGATCG
* * * ** * * **
21542588 GTAGTGGGATCGACAGCACGTAGAGAGGGATCGGGTTGATCCCCGGCTTATGCATTATGTCTCTC
1 GTAGTAGGATCGACAGCACGCAGAGAGGGACCAAGTCGATCCCCGGCTTACGCATTATACCTCTC
21542653 CGACCGGCCTCTCCGAAC-GACTGAGCACCC-CTACGCTCGTTTCATAGGTTGACTTAGGCATAC
66 CGACCGGCCTCTCCG-ACTGACTGAGCACCCGC-ACGCTCGTTTCATAGGTTGACTTAGGCATAC
* * *
21542716 AAAGGT-ATCCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATTGGACCGGATCGAGGG
129 AAAGGTCATCCCCAGTCTAACCATACGAAGTTCATTCCCAGTCTAAGATTGAACCGGATCGAGGG
* ** *
21542780 TTACGGCAGCAGGATCTACAGCATACAGGGGGGATCGAACTGATCCCTGGCTTGCGCATTCTGCC
194 TTACGGCAGCAGGATCGACAGCATACAGGGGGGATCGAACTGATCCCCAGCTTGCACATTCTGCC
* * * **
21542845 TCTCTGGCCGGCTGAAAGCCCGTACGCCCATTTCATGGTTTCGCTTAGGCATAGGGAGTTCATTC
259 TCTCCGGCCAGCTGAAAGCCCGCACGCCCATTTCATGGTTTCGCTTAGGCATACAGAGTTCATTC
*
21542910 CATGTCTAAGCCCCAGCGGAACTAAGGGTTGTGGCAGCAGGATCG
324 CATGTCTAAGCCCCAGCGGAACCAAGGGTTGTGGCAGCAGGATCG
21542955 ACAGTACGTA
Statistics
Matches: 307, Mismatches: 57, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
366 1 0.00
367 198 0.64
368 106 0.35
369 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (368 bp):
GTAGTAGGATCGACAGCACGCAGAGAGGGACCAAGTCGATCCCCGGCTTACGCATTATACCTCTC
CGACCGGCCTCTCCGACTGACTGAGCACCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACAA
AGGTCATCCCCAGTCTAACCATACGAAGTTCATTCCCAGTCTAAGATTGAACCGGATCGAGGGTT
ACGGCAGCAGGATCGACAGCATACAGGGGGGATCGAACTGATCCCCAGCTTGCACATTCTGCCTC
TCCGGCCAGCTGAAAGCCCGCACGCCCATTTCATGGTTTCGCTTAGGCATACAGAGTTCATTCCA
TGTCTAAGCCCCAGCGGAACCAAGGGTTGTGGCAGCAGGATCG
Found at i:21543097 original size:159 final size:158
Alignment explanation
Indices: 21542873--21543174 Score: 353
Period size: 159 Copynumber: 1.9 Consensus size: 158
21542863 CCCGTACGCC
* * *
21542873 CATTTCATGGTTTCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGGAACTAAGGG
1 CATTTCATGGTTTCGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCCCCAACGGAACTAAGGG
* * * * *
21542938 TTGTGGCAGCAGGATCGACAGTACGTAGAGGGGGACCTGGCCGATCCCC-GACTTGCGCATTATG
66 TTGTGGCAGCAAGATCGACAGCACGCAG-GGGGAACCGGGCCGATCCCCAG-CTTGCGCATTATG
21543002 CCTCTTCGAT-CAGCTCAGTGCCCGAGCCCT
129 CCTCTTC-ATCCAGCTCAGTGCCCGAGCCCT
* * ** *
21543032 CATTTCGTGGTTT-GACTTAGGCATACGGAGTTCATTCCCA-GCCTAAGATCTGAACGG-ACTGA
1 CATTTCATGGTTTCG-CTTAGGCATACGGAGTTCATT-CCATGCCTAAG-CCCCAACGGAACTAA
** * * *
21543094 GGGTTGTGGTGGTAAGATCGACAGCACGCAGGGGGAACCGGGTCGATCCCCAGCTTGCGCATTCT
63 GGGTTGTGGCAGCAAGATCGACAGCACGCAGGGGGAACCGGGCCGATCCCCAGCTTGCGCATTAT
21543159 GCCTCTTCATCCAGCT
128 GCCTCTTCATCCAGCT
21543175 GAGCATCCGT
Statistics
Matches: 120, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
157 2 0.02
158 42 0.35
159 68 0.57
160 8 0.07
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (158 bp):
CATTTCATGGTTTCGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCCCCAACGGAACTAAGGG
TTGTGGCAGCAAGATCGACAGCACGCAGGGGGAACCGGGCCGATCCCCAGCTTGCGCATTATGCC
TCTTCATCCAGCTCAGTGCCCGAGCCCT
Found at i:21543236 original size:158 final size:159
Alignment explanation
Indices: 21542901--21543237 Score: 344
Period size: 158 Copynumber: 2.1 Consensus size: 159
21542891 AGGCATAGGG
* * * *
21542901 AGTTCATTCCATGTCTAAGCCCCAGCGGAACTAAGGGTTGTGGCAGCAGGATCGACAGTACGTAG
1 AGTTCATTCCATGTCTAAGCCCCAACGGAACTAAGGGTTGTGGCAGCAAGATCGACAGCACGCAG
* * ** *
21542966 AGGGGGACCTGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCAGCTCAGTGCCCGAGCCC
66 AGGGGAACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCAGCTCAGCACCCGAGCAC
* * ** *
21543031 TCATTTCGTGGTTTGACTTAGGCATACGG
131 TCATTTCGTGGGTTCACTTACACATACGA
* * ** * ** *
21543060 AGTTCATTCCCA-GCCTAAGATCTGAACGG-ACTGAGGGTTGTGGTGGTAAGATCGACAGCACGC
1 AGTTCATT-CCATGTCTAAG-CCCCAACGGAACTAAGGGTTGTGGCAGCAAGATCGACAGCACGC
* * * *
21543123 AG-GGGGAACCGGGTCGATCCCC-AGCTTGCGCATTCTGCCTCTTC-ATCCAGCTGAGCATCCGT
64 AGAGGGGAACCGGGCCGATCCCCGA-CTTGCGCATTATGCCTCTTCGAT-CAGCTCAGCACCCG-
*
21543185 A-CACTCGTTTCGTGGGTTCACTTACACATACGA
126 AGCACTCATTTCGTGGGTTCACTTACACATACGA
21543218 AGTTCATTCCATGTCTAAGC
1 AGTTCATTCCATGTCTAAGC
21543238 ATACGGAGTT
Statistics
Matches: 143, Mismatches: 29, Indels: 14
0.77 0.16 0.08
Matches are distributed among these distances:
157 6 0.04
158 85 0.59
159 44 0.31
160 8 0.06
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.25
Consensus pattern (159 bp):
AGTTCATTCCATGTCTAAGCCCCAACGGAACTAAGGGTTGTGGCAGCAAGATCGACAGCACGCAG
AGGGGAACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCAGCTCAGCACCCGAGCAC
TCATTTCGTGGGTTCACTTACACATACGA
Found at i:21544466 original size:26 final size:25
Alignment explanation
Indices: 21544430--21544508 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 25
21544420 GTTGACTTAG
21544430 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCC-AGTCTAA
21544456 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCAT-CCCAGTCTAA
21544482 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCA-TCCCAGTCTAA
21544508 G
1 G
21544509 ATCAGACCAG
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
26 47 0.92
27 4 0.08
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:21544842 original size:158 final size:156
Alignment explanation
Indices: 21544482--21544977 Score: 502
Period size: 158 Copynumber: 3.1 Consensus size: 156
21544472 CCCAGTCTAA
* * * *
21544482 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGTAG-GATCGGT
1 GCATACGGAGTTCATTACCAGTCTAAGATCAGATCAGACCGAGGGTT-TGGCAGTAGCGATCGAT
* * *
21544546 AGCCACGCAGGGGGGACCGGGCCAATCCCCGGCTTACGCATTCTGCCTCTCC-AGTCGGCTGAGC
65 AG-CACGCAGGGGGGATCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGA-TCGGCTGAGC
* *
21544610 ACCCGCACGCCTGTTTCGTGGGTTGGCTTAG
127 ACCCACACGTC-GTTTCGTGGGTTGGCTTAG
* * ** *
21544641 GCATAGGGAGTTCAAT-CCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGT-GCGACCG
1 GCATACGGAGTTCATTACCA-GTCTAAG-ATCAGATCAGACCGAGGGTT-TGGCAGTAGCGATCG
* * * * * * *
21544703 ATAGCATGCAAAGAGGGATCGGACCGATCCCGGCTTGTGCGTTCTGCCTCTCCGATCGGCTCAGC
63 ATAGCACGC-AGGGGGGATCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
*
21544768 ACCCACACGATCGTTTCGTGGGTTGACTTAG
127 ACCCACACG-TCGTTTCGTGGGTTGGCTTAG
* * *
21544799 GCATACGGAGTTCATTACCAGTCTAAGATCAGATCGGATCGA-GGTTT-CCAGTAGCAGGATCGA
1 GCATACGGAGTTCATTACCAGTCTAAGATCAGATCAGACCGAGGGTTTGGCAGTAGC--GATCGA
* * * * *
21544862 TAGCACGTAGGGGGGATCGGGTCGGTCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
64 TAGCACGCAGGGGGGATCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC-A
* *
21544927 CCAGACACACGCTCATTTCATGGGTTGGCTTAG
128 CC---CACACG-TCGTTTCGTGGGTTGGCTTAG
21544960 GCATACGGAGTTCATTAC
1 GCATACGGAGTTCATTAC
21544978 ATATCGAAGC
Statistics
Matches: 276, Mismatches: 46, Indels: 28
0.79 0.13 0.08
Matches are distributed among these distances:
155 4 0.01
156 3 0.01
157 53 0.19
158 106 0.38
159 65 0.24
160 3 0.01
161 42 0.15
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTACCAGTCTAAGATCAGATCAGACCGAGGGTTTGGCAGTAGCGATCGATA
GCACGCAGGGGGGATCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCC
ACACGTCGTTTCGTGGGTTGGCTTAG
Found at i:21545361 original size:171 final size:171
Alignment explanation
Indices: 21545037--21545362 Score: 388
Period size: 171 Copynumber: 1.9 Consensus size: 171
21545027 AGGGTTGCGA
* * * *
21545037 CAGCAGGATCGATAGCACGTATGGAGGGACCGAGCTGATCCCCGGCTTGCACATTCTACCTCTCC
1 CAGCAGGATCGACAGCACGTATGGAGGGACCAAGCTGATCCCCGGCTTACACATTATACCTCTCC
* * * * * * **
21545102 GACCGGTTAAGCGCTAGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 GACCGGCTAAGCGCCAGCACGCTCCTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATAC
*
21545167 CTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGG
131 CTAAGCACCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGG
* * ** *
21545208 CAGCGGGATCGACAGCACGTA-GAGAGGGACCAAGCTGATCCCTGGCTTACGTATTATGCCTCTC
1 CAGCAGGATCGACAGCACGTATG-GAGGGACCAAGCTGATCCCCGGCTTACACATTATACCTCTC
* * * *
21545272 CGGCTGGCTAAGCGCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-
65 CGACCGGCTAAGCGCCAGCACGCTCCTTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CCAT
* *
21545336 ACCTAAG-ATCAGATCGGATCGAGGGTT
129 ACCTAAGCACCAG-TCGGACCGAGGGTT
21545363 ACGGTAACAA
Statistics
Matches: 128, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
170 4 0.03
171 121 0.95
172 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (171 bp):
CAGCAGGATCGACAGCACGTATGGAGGGACCAAGCTGATCCCCGGCTTACACATTATACCTCTCC
GACCGGCTAAGCGCCAGCACGCTCCTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATAC
CTAAGCACCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGG
Found at i:21545524 original size:26 final size:26
Alignment explanation
Indices: 21545474--21545525 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
21545464 TTCGCTTACA
* ** *
21545474 CATATGGAGTTCATTCCTTGTCTAAG
1 CATACGGAGTTCATTCCCAGACTAAG
21545500 CATACGGAGTTCATTCCCAGACTAAG
1 CATACGGAGTTCATTCCCAGACTAAG
21545526 ATTATTTCAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGACTAAG
Found at i:21546037 original size:26 final size:26
Alignment explanation
Indices: 21545986--21546038 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21545976 ATTGGCTTAG
* *
21545986 GCATACGGAGTTCATTCCATTACTAA
1 GCATACGGAGATCATTCCAGTACTAA
*
21546012 GCATATGGAGATCATTCTCAGT-CTAA
1 GCATACGGAGATCATTC-CAGTACTAA
21546038 G
1 G
21546039 ATCAGACTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGATCATTCCAGTACTAA
Found at i:21546218 original size:27 final size:26
Alignment explanation
Indices: 21546180--21546233 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
21546170 GTTGACTTAG
21546180 GCATACGGAGTTCATTCCCAAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
* *
21546207 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21546233 G
1 G
21546234 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21547453 original size:26 final size:26
Alignment explanation
Indices: 21547417--21547467 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21547407 TGGCTTAGGT
21547417 ATACGGAGTTCATTCC-ATGTCTAAGC
1 ATACGGAGTTCATTCCTA-GTCTAAGC
21547443 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCTAGTCTAAG
21547468 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCTAGTCTAAGC
Found at i:21547824 original size:26 final size:26
Alignment explanation
Indices: 21547795--21547847 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21547785 GTTGACTTAG
*
21547795 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
21547821 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21547847 G
1 G
21547848 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21548204 original size:159 final size:157
Alignment explanation
Indices: 21547817--21548204 Score: 342
Period size: 159 Copynumber: 2.5 Consensus size: 157
21547807 TATCCCCAGT
* * * *
21547817 CTAA-GCATACGGAGTTCATTCGCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGTAAGG-
1 CTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCACACCGGACCGAGGGTTGCGACAGT-AGGA
* * * *
21547880 TCAACAGCACGTAGGGGGACCGGACGGATCCCCGGCTTACGTATTCTGCCTCTCCCACCGGCTGA
65 TCGACAGCACGTAGGAGGACCAGACGGATCCCCGGCTTACGTATTATGCCTCTCCCACCGGCTGA
* * *
21547945 ATGCCTGCACGTCCATTTCGTGGGTTGG
130 ACGCCCGCACGTCCATTTCGTGGGTTGA
* * * * * * * * * * *
21547973 CTTAGTCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCAGACCGAGGGTTGTGGCAGCAAG
1 CTAAGGCATACGGAGTTCATTCCCA-GTCTAAGATCACA-CCGGACCGAGGGTTGCGACAGTAGG
* * * * ***
21548036 ACCGGCAGCACGTAGAGCAGGACCAAGTC-GATCCCCGGCTTGC-TCATTATGCCTCTTTGACCG
64 ATCGACAGCACGTAG-G-AGGACC-AGACGGATCCCCGGCTTACGT-ATTATGCCTCTCCCACCG
* *
21548099 GCTTAACGCCCGAACAC-T-CGTTTCGTGGGTTGA
125 GCTGAACGCCCG--CACGTCCATTTCGTGGGTTGA
*
21548132 CTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCACACCGGACCAAGGGTTGCGACAGTAGGAT
1 CTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCACACCGGACCGAGGGTTGCGACAGTAGGAT
*
21548197 TGACAGCA
66 CGACAGCA
21548205 TGCAGTAAGG
Statistics
Matches: 174, Mismatches: 46, Indels: 21
0.72 0.19 0.09
Matches are distributed among these distances:
156 9 0.05
157 47 0.27
158 2 0.01
159 104 0.60
160 9 0.05
161 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (157 bp):
CTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCACACCGGACCGAGGGTTGCGACAGTAGGAT
CGACAGCACGTAGGAGGACCAGACGGATCCCCGGCTTACGTATTATGCCTCTCCCACCGGCTGAA
CGCCCGCACGTCCATTTCGTGGGTTGA
Found at i:21549687 original size:26 final size:26
Alignment explanation
Indices: 21549651--21549703 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21549641 GTTAACTTAG
21549651 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
*
21549677 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21549703 G
1 G
21549704 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21549950 original size:15 final size:15
Alignment explanation
Indices: 21549930--21549968 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
21549920 AGAGGGATCG
21549930 GGCCTCTCTCCGACC
1 GGCCTCTCTCCGACC
* *
21549945 GGCCTCTCCCCGACT
1 GGCCTCTCTCCGACC
*
21549960 GACCTCTCT
1 GGCCTCTCT
21549969 GACCTGTTGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.08, C:0.51, G:0.18, T:0.23
Consensus pattern (15 bp):
GGCCTCTCTCCGACC
Found at i:21550733 original size:26 final size:26
Alignment explanation
Indices: 21550703--21550755 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21550693 GTTGACTTAG
*
21550703 GCATACGGAGTTCATACCTAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
* *
21550729 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
21550755 G
1 G
21550756 ATCAAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:21551789 original size:26 final size:26
Alignment explanation
Indices: 21551760--21551812 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21551750 GTTGACTTAG
21551760 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21551786 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21551812 G
1 G
21551813 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21553249 original size:26 final size:26
Alignment explanation
Indices: 21553213--21553263 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
21553203 TTGACTTAGG
21553213 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
*
21553239 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
21553264 GATTGAATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:21553712 original size:367 final size:368
Alignment explanation
Indices: 21553127--21553824 Score: 909
Period size: 367 Copynumber: 1.9 Consensus size: 368
21553117 GAACCAAGTC
* * * * * *
21553127 GATCCTCGGCTTACGCATTCTACCTCTCCGATCGGCCTCTTCGACTGGCTGAGCGCCCGCACGCT
1 GATCCCCGGCTTACGCATTATACCTCTCCGACCGGCCTCTCCGACTGACTGAGCACCCGCACGCT
* * * ** * *
21553192 TGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAACCATACGGAGTTCATTCCC
66 CGTTTCATAGGTTGACTTAGGCATACAAAGGTCATCCCCAGTCTAACCATACGAAGTTCATTCCC
* * ** * **
21553257 AGTCTAAGATTGAATCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCATGTAGGGGGGATTGGG
131 AGTCTAAGATTGAACCGGATCGAGGGTTACGGCAGCAGGATCGACAGCATACAGGGGGGATCGAA
* ** ** * * *
21553322 CTGATCCCCAGCTTGTACATTCTGCCTCTCCGGCCGGCTGAGTGCTTGCACGCTCGTTTTATGCG
196 CTGATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGGCTGAAAGCCCGCACGCCCATTTCATG-G
* * ** *
21553387 -TTGGCTTAGGTATACAGAGTTCATTCCATGTCTAAGCCCCAGTTGAACCGAGGGTTGTGGCAGC
260 TTTCGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCGGAACCAAGGGTTGTGGCAGC
21553451 AGGATCGGTAGTGGGATCGACAGCACGTAGAGAGGGATCGGGTT
325 AGGATCGGTAGTGGGATCGACAGCACGTAGAGAGGGATCGGGTT
* **
21553495 GATCCCCGGCTTATGCATTATGTCTCTCCGACCGGCCTCTCCGAAC-GACTGAGCACCC-CTACG
1 GATCCCCGGCTTACGCATTATACCTCTCCGACCGGCCTCTCCG-ACTGACTGAGCACCCGC-ACG
*
21553558 CTCGTTTCATAGGTTGACTTAGGCATACAAAGGT-ATCCCCAGTCTAAGCATACGAAGTTCATTC
64 CTCGTTTCATAGGTTGACTTAGGCATACAAAGGTCATCCCCAGTCTAACCATACGAAGTTCATTC
* * *
21553622 CTAGTCTAAGATTGGACCGGATCGAGGGTTACGGCAGCAGGATCTACAGCATACAGGGGGGATCG
129 CCAGTCTAAGATTGAACCGGATCGAGGGTTACGGCAGCAGGATCGACAGCATACAGGGGGGATCG
** * * *
21553687 AACTGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAAAGCCCGTACGCCCATTTCATG
194 AACTGATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGGCTGAAAGCCCGCACGCCCATTTCATG
** *
21553752 GTTTCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGGAACTAAGGGTTGTGGCAG
259 GTTTCGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCGGAACCAAGGGTTGTGGCAG
21553817 CAGGATCG
324 CAGGATCG
21553825 ACAGTACGTA
Statistics
Matches: 279, Mismatches: 48, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
366 1 0.00
367 199 0.71
368 77 0.28
369 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (368 bp):
GATCCCCGGCTTACGCATTATACCTCTCCGACCGGCCTCTCCGACTGACTGAGCACCCGCACGCT
CGTTTCATAGGTTGACTTAGGCATACAAAGGTCATCCCCAGTCTAACCATACGAAGTTCATTCCC
AGTCTAAGATTGAACCGGATCGAGGGTTACGGCAGCAGGATCGACAGCATACAGGGGGGATCGAA
CTGATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGGCTGAAAGCCCGCACGCCCATTTCATGGT
TTCGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCGGAACCAAGGGTTGTGGCAGCA
GGATCGGTAGTGGGATCGACAGCACGTAGAGAGGGATCGGGTT
Found at i:21553907 original size:159 final size:158
Alignment explanation
Indices: 21553743--21554044 Score: 362
Period size: 159 Copynumber: 1.9 Consensus size: 158
21553733 CCCGTACGCC
* * *
21553743 CATTTCATGGTTTCG-CTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCGGAACTAA
1 CATTTCATGGTTT-GACTTAGGCATACGGAGTTCATTCCCA-GCCTAAGACCCCAACGG-ACTAA
* * * *
21553805 GGGTTGTGGCAGCAGGATCGACAGTACGTAGAGGGGGACCTGGCCGATCCCC-GACTTGCGCATT
63 GGGTTGTGGCAGCAAGATCGACAGCACGTAG-GGGGAACCGGGCCGATCCCCAG-CTTGCGCATT
21553869 ATGCCTCTTCGAT-CAGCTCAGTGCCCGAGCCCT
126 ATGCCTCTTC-ATCCAGCTCAGTGCCCGAGCCCT
* * ** *
21553902 CATTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCTGAACGGACTGAGGG
1 CATTTCATGGTTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGACCCCAACGGACTAAGGG
** * * *
21553967 TTGTGGTGGTAAGATCGACAGCACGTAGGGGGAACCGGGTCGATCCCCAGCTTGCGCATTCTGCC
66 TTGTGGCAGCAAGATCGACAGCACGTAGGGGGAACCGGGCCGATCCCCAGCTTGCGCATTATGCC
21554032 TCTTCATCCAGCT
131 TCTTCATCCAGCT
21554045 GAGCATCCGT
Statistics
Matches: 121, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
157 2 0.02
158 42 0.35
159 69 0.57
160 8 0.07
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.25
Consensus pattern (158 bp):
CATTTCATGGTTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGACCCCAACGGACTAAGGG
TTGTGGCAGCAAGATCGACAGCACGTAGGGGGAACCGGGCCGATCCCCAGCTTGCGCATTATGCC
TCTTCATCCAGCTCAGTGCCCGAGCCCT
Found at i:21554106 original size:158 final size:159
Alignment explanation
Indices: 21553771--21554107 Score: 353
Period size: 158 Copynumber: 2.1 Consensus size: 159
21553761 AGGCATAGGG
* * *
21553771 AGTTCATTCCATGTCTAAGCCCCAGCGGAACTAAGGGTTGTGGCAGCAGGATCGACAGTACGTAG
1 AGTTCATTCCATGTCTAAGCCCCAACGGAACTAAGGGTTGTGGCAGCAAGATCGACAGCACGTAG
* * ** *
21553836 AGGGGGACCTGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCAGCTCAGTGCCCGAGCCC
66 AGGGGAACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCAGCTCAGCACCCGAGCAC
* * ** *
21553901 TCATTTCGTGGTTTGACTTAGGCATACGG
131 TCATTTCGTGGGTTCACTTACACATACGA
* * ** * ** *
21553930 AGTTCATTCCCA-GCCTAAGATCTGAACGG-ACTGAGGGTTGTGGTGGTAAGATCGACAGCACGT
1 AGTTCATT-CCATGTCTAAG-CCCCAACGGAACTAAGGGTTGTGGCAGCAAGATCGACAGCACGT
* * * *
21553993 AG-GGGGAACCGGGTCGATCCCC-AGCTTGCGCATTCTGCCTCTTC-ATCCAGCTGAGCATCCGT
64 AGAGGGGAACCGGGCCGATCCCCGA-CTTGCGCATTATGCCTCTTCGAT-CAGCTCAGCACCCG-
*
21554055 A-CACTCGTTTCGTGGGTTCACTTACACATACGA
126 AGCACTCATTTCGTGGGTTCACTTACACATACGA
21554088 AGTTCATTCCATGTCTAAGC
1 AGTTCATTCCATGTCTAAGC
21554108 ATACGGAGTT
Statistics
Matches: 144, Mismatches: 28, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
157 6 0.04
158 85 0.59
159 45 0.31
160 8 0.06
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (159 bp):
AGTTCATTCCATGTCTAAGCCCCAACGGAACTAAGGGTTGTGGCAGCAAGATCGACAGCACGTAG
AGGGGAACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCAGCTCAGCACCCGAGCAC
TCATTTCGTGGGTTCACTTACACATACGA
Found at i:21555335 original size:26 final size:25
Alignment explanation
Indices: 21555299--21555377 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 25
21555289 GTTGACTTAG
21555299 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCC-AGTCTAA
21555325 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCAT-CCCAGTCTAA
21555351 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCA-TCCCAGTCTAA
21555377 G
1 G
21555378 ATCAGACCAG
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
26 47 0.92
27 4 0.08
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:21555732 original size:159 final size:154
Alignment explanation
Indices: 21555351--21555848 Score: 439
Period size: 159 Copynumber: 3.1 Consensus size: 154
21555341 CCCAGTCTAA
* * * * *
21555351 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGTAGGATCGGTA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGATCGGACCGAGGGTT-C-GTAGCAGGATCGATA
* *
21555416 GCACGCAGGGGGGACCGGGCCAATCCCCGG-TT-TACGCATTCTGCCTCTCC-AGTCGGCTGAGC
63 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGTACG--TTCTGCCTCTCCGA-TCGGCTGAGC
* *
21555478 ACCCGCACGCCTGTTTCGTGGGTTGGCTTAG
125 ACCCACACGTC-GTTTCGTGGGTTGGCTTAG
* * ** * *
21555509 GCATAGGGAGTTCAATCCATGTCTAAGCCCCAG-TCGGACCGAGGGTT-GTGGCAGTGCGACCGA
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTCGTAGCA--G-GATCGA
* * * * *
21555572 TAGAACGCAAAGAGGGATCGGACCGATCCCCGGCTTGTACGTTCTGCCTCTCCGATCGGCTCAGC
61 TAGCACGC-AGGGGGGATCGGGCCGATCCCCGGCTTGTACGTTCTGCCTCTCCGATCGGCTGAGC
*
21555637 ACCCACACGATCGTTTCGTGGGTTGACTTAG
125 ACCCACACG-TCGTTTCGTGGGTTGGCTTAG
* **
21555668 GCATACGAAGTTCATTACCAGTCTAAGATCAGATCGGATTGAGGGTTCCAGTAGCAGGATCGATA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGATCGGACCGAGGGTT-C-GTAGCAGGATCGATA
* * * ** ** * *
21555733 GCACGTAGGGGGGATCGGGTCGGTCTTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
63 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGTACGTTCTGCCTCTCCGATCGGCTGAGC-AC
* *
21555798 CAGACACACGCTCATTTCATGGGTTGGCTTAG
127 C---CACACG-TCGTTTCGTGGGTTGGCTTAG
*
21555830 GCATATGGAGTTCATTCCA
1 GCATACGGAGTTCATTCCA
21555849 TATCGAAGCA
Statistics
Matches: 271, Mismatches: 50, Indels: 35
0.76 0.14 0.10
Matches are distributed among these distances:
155 3 0.01
157 4 0.01
158 92 0.34
159 114 0.42
160 8 0.03
161 7 0.03
162 43 0.16
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGATCGGACCGAGGGTTCGTAGCAGGATCGATAGCA
CGCAGGGGGGATCGGGCCGATCCCCGGCTTGTACGTTCTGCCTCTCCGATCGGCTGAGCACCCAC
ACGTCGTTTCGTGGGTTGGCTTAG
Found at i:21556231 original size:171 final size:171
Alignment explanation
Indices: 21555907--21556232 Score: 388
Period size: 171 Copynumber: 1.9 Consensus size: 171
21555897 AGGGTTGCGA
* * * *
21555907 CAGCAGGATCGATAGCACGTATGGAGGGACCGAGCTGATCCCCGGCTTGCACATTCTACCTCTCC
1 CAGCAGGATCGACAGCACGTATGGAGGGACCAAGCTGATCCCCGGCTTACACATTATACCTCTCC
* * * * * * **
21555972 GACCGGTTAAGCGCTAGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 GACCGGCTAAGCGCCAGCACGCTCCTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATAC
*
21556037 CTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGG
131 CTAAGCACCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGG
* * ** *
21556078 CAGCGGGATCGACAGCACGTA-GAGAGGGACCAAGCTGATCCCTGGCTTACGTATTATGCCTCTC
1 CAGCAGGATCGACAGCACGTATG-GAGGGACCAAGCTGATCCCCGGCTTACACATTATACCTCTC
* * * *
21556142 CGGCTGGCTAAGCGCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-
65 CGACCGGCTAAGCGCCAGCACGCTCCTTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CCAT
* *
21556206 ACCTAAG-ATCAGATCGGATCGAGGGTT
129 ACCTAAGCACCAG-TCGGACCGAGGGTT
21556233 ACGGTAACAA
Statistics
Matches: 128, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
170 4 0.03
171 121 0.95
172 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (171 bp):
CAGCAGGATCGACAGCACGTATGGAGGGACCAAGCTGATCCCCGGCTTACACATTATACCTCTCC
GACCGGCTAAGCGCCAGCACGCTCCTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATAC
CTAAGCACCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGG
Found at i:21556394 original size:26 final size:26
Alignment explanation
Indices: 21556344--21556395 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
21556334 TTCGCTTACA
* ** *
21556344 CATATGGAGTTCATTCCTTGTCTAAG
1 CATACGGAGTTCATTCCCAGACTAAG
21556370 CATACGGAGTTCATTCCCAGACTAAG
1 CATACGGAGTTCATTCCCAGACTAAG
21556396 ATTATTTCAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGACTAAG
Found at i:21556408 original size:518 final size:503
Alignment explanation
Indices: 21555326--21556397 Score: 1202
Period size: 518 Copynumber: 2.1 Consensus size: 503
21555316 CTAGTCTAAG
* * *
21555326 CATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
1 CATATGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGAC
* * * * * * *
21555390 CGAGGGTTACGGCAGTAGGATCGGTAGCACGCAGGGGGGACCGGGCCAATCCCCGGTTTACGCAT
65 CGAGGGTTACGACAGCAGGATCGATAGCACGCAGGAGGGACCGAGCCAATCCCCGGCTTACACAT
* * * * * *
21555455 TCTGCCTCTCCAGTCGGCTGAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
130 TCTACCTCTCCAGCCGGCTAAGCACCAGCACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGT
21555520 TCAATCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTGCGACCGATAGAACGCAAAGA
195 TCAATCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTGCGACCGATAGAACGCAAAGA
* * * * *
21555585 GGGATCGGACCGATCCCCGGCTTGTACGTTCTGCCTCTCCGATCGGCTCAGCACCCACACGATCG
260 GGGACCAGACCGATCCCCGGCTTGTAC-TTATGCCTCTCCGATCGGCTAAGCACCCACACGATCC
** *
21555650 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTACCAGTCTAAGATCAGATCGGATTGAGGGTT
324 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTACCAACCTAAGATCAGATCGGATCGAGGGTT
* * * * * * * * * *
21555715 CCAGTAGCAGGATCGATAGCACGTAGGGGGGATCGGGTCGGTCTTCGGCTTGCGCATTCTGCCTC
389 ACAGTAACAAGATCGATAGCACGCAGGGGGGACCAGGTCGATCTCCAGCTTGCGCATTCTACCTC
* * * * **
21555780 TCCGATCGGCTGAGCGCCCAGACACACGCTCATTTCATGGGTTGGCTTAGG
454 TCCAACCGGCTGAGCACCCAGACACAC-CTCATTTCATGGGTTCGCTTACA
* * *
21555831 CATATGGAGTTCATTCCATATCGAAGCATACGGAGTTCATTTCCA-ATCTAAGATCAGACCAGAC
1 CATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGA-CTAAGATCAGACCAGAC
* * ** *
21555895 CGAGGGTTGCGACAGCAGGATCGATAGCACGTATGGAGGGACCGAGCTGATCCCCGGCTTGCACA
65 CGAGGGTTACGACAGCAGGATCGATAGCACGCA-GGAGGGACCGAGCCAATCCCCGGCTTACACA
* * * *
21555960 TTCTACCTCTCC-GACCGGTTAAGCGCTAGTACG-CTCGTTTCATGGGTTGGCTTAGGCATACGG
129 TTCTACCTCTCCAG-CCGGCTAAGCACCAGCACGCCT-GTTTCATGGGTTGGCTTAGGCATACGG
* *
21556023 AGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAG-GACCGGCAGCGGGAT
192 AGTTCAATCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGT-G--GCAGTG--C-G-A-C-CGAT
* * * *
21556087 CG-ACAGCACGTAGAGAGGGACCA-AGCTGATCCCTGGCTTACGTA-TTATGCCTCTCCG-GCTG
248 AGAAC-GCA---A-AGAGGGACCAGA-CCGATCCCCGGCTT--GTACTTATGCCTCTCCGATC-G
* * * *
21556148 GCTAAGCGCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAACCTAA
304 GCTAAGCACCCACACGATCCTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTACCAACCTAA
*
21556212 GATCAGATCGGATCGAGGGTTACGGTAACAAGATCGATAGCACGCAGGGGGGACCAGGTCGATGC
368 GATCAGATCGGATCGAGGGTTACAGTAACAAGATCGATAGCACGCAGGGGGGACCAGGTCGAT-C
* *
21556277 -CCAGCTTGCGCA-TCTACCTCTTCAACCGGCTGAGCACCC-G-CACA-CTCGTTTCATGGGTTC
432 TCCAGCTTGCGCATTCTACCTCTCCAACCGGCTGAGCACCCAGACACACCTCATTTCATGGGTTC
21556337 GCTTACA
497 GCTTACA
*
21556344 CATATGGAGTTCATTCCTTGTCTAAGCATACGGAGTTCATTCCCAGACTAAGAT
1 CATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGACTAAGAT
21556398 TATTTCAGAC
Statistics
Matches: 472, Mismatches: 69, Indels: 44
0.81 0.12 0.08
Matches are distributed among these distances:
504 3 0.01
505 84 0.18
506 112 0.24
507 1 0.00
508 1 0.00
509 4 0.01
510 1 0.00
511 1 0.00
512 1 0.00
513 70 0.15
514 8 0.02
515 4 0.01
516 1 0.00
517 26 0.06
518 151 0.32
519 1 0.00
520 3 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (503 bp):
CATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACC
GAGGGTTACGACAGCAGGATCGATAGCACGCAGGAGGGACCGAGCCAATCCCCGGCTTACACATT
CTACCTCTCCAGCCGGCTAAGCACCAGCACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTT
CAATCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTGCGACCGATAGAACGCAAAGAG
GGACCAGACCGATCCCCGGCTTGTACTTATGCCTCTCCGATCGGCTAAGCACCCACACGATCCTT
TCGTGGGTTGACTTAGGCATACGAAGTTCATTACCAACCTAAGATCAGATCGGATCGAGGGTTAC
AGTAACAAGATCGATAGCACGCAGGGGGGACCAGGTCGATCTCCAGCTTGCGCATTCTACCTCTC
CAACCGGCTGAGCACCCAGACACACCTCATTTCATGGGTTCGCTTACA
Found at i:21556690 original size:513 final size:498
Alignment explanation
Indices: 21555346--21557079 Score: 1378
Period size: 513 Copynumber: 3.4 Consensus size: 498
21555336 TCATCCCCAG
* * ** * *
21555346 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGTAGGAT
1 TCTAAGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACCGAGGCTGGCGACAGCAGGAT
* * * * * * * * * * *
21555411 CGGTAGCACGCAGGG-GGGACCGGGCCAATCCCCGGTTTACGCATTCTGCCTCTCC-AGTCGGCT
66 CGATAGCACACAGGGAGGGACCGAGCTAATCCCCAGCTTGCACATTCTACCTCTCCGA-CCGACT
* * ** * *
21555474 GAGCACCCGCACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAATCCATGTCTAAGCC
130 AAGCGCTAGCACGCTC-ATTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCC
* ** * * *
21555538 CCAGTCGGACCGAGGGTTGTGGCAG-TGCGACCGATAGAACGCA-AAGAGGGATCGGACCGATCC
193 CCAGTCGGACCGAGGGTTGTGGCAGCAG-GACCGGCAGCACGCAGAAGAGGGATAGG-CTGATCC
* * * * * * * * * *
21555601 CCGGCTTGTACGTTCTGCCTCTCCGATCGGCTCAGCACCCACACGATCGTTTCGTGGGTTGACTT
256 CCGGCTTGTGCATTATGCCTCTTCAATCGGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTT
* * * *
21555666 AGGCATACGAAGTTCATTACCAGTCTAAGATCAGATCGGATTGAGGGTTCCAGTAGCAGGATCGA
321 AGGCATACG-AGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGTAGCAGGATCGA
* * * * * * * *
21555731 TAGCACGTAGGGGGGATCGGGTCGGTCTTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
385 TAGCACGCAGGGGGGACCAGGTCGATC-CCAGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCG
* *
21555796 CCCAGACACACGCTCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATA
449 CCC-G-CACA--CTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCC-TT
* * * *
21555851 TCGAAGCATACGGAGTTCATTTCCA-ATCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGA
1 TCTAAGCATACGGAGTTCATTCCCAGA-CTAAGATCAGACCAGACCGAGGCTGGCGACAGCAGGA
** * * * **
21555915 TCGATAGCACGTATGGAGGGACCGAGCTGATCCCCGGCTTGCACATTCTACCTCTCCGACCGGTT
65 TCGATAGCACACAGGGAGGGACCGAGCTAATCCCCAGCTTGCACATTCTACCTCTCCGACCGACT
* * *
21555980 AAGCGCTAGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
130 AAGCGCTAGCACGCTCATTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCC
* *
21556045 CAGTCGGACCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGACAGCACGTAGAGAGGGACCA
194 CAGTCGGACCGAGGGTTGTGGCAGCAGGACCGGCA----G--C-AC-GCA-G-A-AGAGGGA-TA
* * ** * *** *
21556110 AGCTGATCCCTGGCTTACGTATTATGCCTC-TCCGGCTGGCT-AAGCGCCCGCACGCTCCTTTCG
247 GGCTGATCCCCGGCTTGTGCATTATGCCTCTTCAATC-GGCTCAA-CGCCCGCACGCTCATTTCG
**
21556173 TGGGTTGACTTAGGCATACAGAGTTCATTCCCAACCTAAGATCAGATCGGATCGAGGGTTACGGT
310 TGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGT
* * * *
21556238 AACAAGATCGATAGCACGCAGGGGGGACCAGGTCGATGCCCAGCTTGCGCA-TCTACCTCTTCAA
374 AGCAGGATCGATAGCACGCAGGGGGGACCAGGTCGAT-CCCAGCTTGCGCATTCTGCCTCTTCGA
* * **
21556302 CCGGCTGAGCACCCGCACACTCGTTTCATGGGTTCGCTTACACATATGGAGTTCATTCCTT
438 CCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCTT
* *** *
21556363 GTCTAAGCATACGGAGTTCATTCCCAGACTAAGATTATTTCAGACCGAGGCTGGCGGCAGCAGGA
1 -TCTAAGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACCGAGGCTGGCGACAGCAGG-
** ** **
21556428 CCAGTAGCAAGATCTGTAGCACACAGGGAGGGACC-AGGCTAATCTTCAGCTTGCGTATTCTGTC
64 --A-T--C--GA----TAGCACACAGGGAGGGACCGA-GCTAATCCCCAGCTTGCACATTCTACC
** * * * * *
21556492 TCTCCGGTCGACTGAGCTCTCGCATGCTCATTTCGTCGGTTGGCTTAGGCATAGGCAGTTCATTC
117 TCTCCGACCGACTAAGCGCTAGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGG-AGTTCATTC
* ** *
21556557 CATGTCTAAGCCCTAG-CTGGACTAAAGGTTGTGGCAGCAGGACCGGCAGCACGCAGAAG-GGGA
181 CATGTCTAAGCCCCAGTC-GGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAAGAGGGA
* * * *
21556620 TTGGTCTGATCCCCGGCTTGTGCATTATGCCTCTTCAATCGGCTCAACGTCCGTACGCTCATTCC
245 TAGG-CTGATCCCCGGCTTGTGCATTATGCCTCTTCAATCGGCTCAACGCCCGCACGCTCATTTC
* * * * * * * *
21556685 GTGGGTTGGCTTATGCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGA
309 GTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGG
* * *
21556750 CAGCAGGATCGGTAGCACGCAGGGGGGACCAGG-CTGATCCCCGACTTGCGCATTCTGCCTCTTC
373 TAGCAGGATCGATAGCACGCAGGGGGGACCAGGTC-GATCCCAG-CTTGCGCATTCTGCCTCTTC
* * * *
21556814 GACCAGCTGAG-GCCCGCACGCTCGTTTCATGGATTGGCTTAGGCATACGGAGTTCATTCCATT
436 GACCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCC-TT
* * * * * * * *
21556877 ACTAAGCATATGGAGATCATTCTCAGTCTAAGATCAGACTA-ACCAAGGGTTGCGGTAGCAGGAC
1 TCTAAGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACC--GAG--GC--TGGC--GA-
* * * * ** * *
21556941 CAGCAACAAGATCGATAGCACACAGGG-GGGATCGAG-TCGATCCCCGGCTTGTGCATTTTGCCT
57 CAG---CAGGATCGATAGCACACAGGGAGGGACCGAGCT-AATCCCCAGCTTGCACATTCTACCT
* * * ** * *
21557004 CTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
118 CTCCGACCGACTAAGCGCTAGCACGCTCATTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATT-C
*
21557069 CAAGTCTAAGC
181 CATGTCTAAGC
21557080 ATATGGAGTT
Statistics
Matches: 983, Mismatches: 184, Indels: 117
0.77 0.14 0.09
Matches are distributed among these distances:
505 70 0.07
506 121 0.12
507 3 0.00
510 2 0.00
511 75 0.08
512 36 0.04
513 303 0.31
514 34 0.03
515 5 0.01
516 7 0.01
517 30 0.03
518 150 0.15
519 5 0.01
520 2 0.00
521 7 0.01
524 7 0.01
525 126 0.13
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (498 bp):
TCTAAGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACCGAGGCTGGCGACAGCAGGAT
CGATAGCACACAGGGAGGGACCGAGCTAATCCCCAGCTTGCACATTCTACCTCTCCGACCGACTA
AGCGCTAGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCA
GTCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAAGAGGGATAGGCTGATCCCCGGC
TTGTGCATTATGCCTCTTCAATCGGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
TACGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGTAGCAGGATCGATAGCAC
GCAGGGGGGACCAGGTCGATCCCAGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCAC
ACTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCTT
Found at i:21556907 original size:26 final size:26
Alignment explanation
Indices: 21556856--21556908 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21556846 ATTGGCTTAG
* *
21556856 GCATACGGAGTTCATTCCATTACTAA
1 GCATACGGAGATCATTCCAGTACTAA
*
21556882 GCATATGGAGATCATTCTCAGT-CTAA
1 GCATACGGAGATCATTC-CAGTACTAA
21556908 G
1 G
21556909 ATCAGACTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGATCATTCCAGTACTAA
Found at i:21557089 original size:27 final size:26
Alignment explanation
Indices: 21557051--21557104 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
21557041 GTTGACTTAG
21557051 GCATACGGAGTTCATTCCCAAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
* *
21557078 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21557104 G
1 G
21557105 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21557552 original size:158 final size:157
Alignment explanation
Indices: 21557078--21557579 Score: 512
Period size: 158 Copynumber: 3.2 Consensus size: 157
21557068 CCAAGTCTAA
*
21557078 GCATATGGAGTTCATTCTCA-GTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGAT
1 GCATATGGAGTTCATTC-CATGTCTAAGATCAGATCAGACCGAGGGTTATGGCAGCAGGATCGAT
* *
21557142 AGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCACATTTTGCCTCT-TCGA-CAGGCTGAGC
65 AGCACGCAGGGGGGACCGAG-CGATCCCTGGCTTGCGCATTTTGCCTCTCT-GACCA-GCTGAGC
*
21557205 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
127 GCCCGCACACTCGTTTCGTGGGTTGGCTTAG
* * ** * * * * *
21557236 GCATAGGGAGTTCATTCCATGTTTAAGCCCCTG-TCAGACCGAGGGTTATGGTAGCGGGACCGGT
1 GCATATGGAGTTCATTCCATGTCTAAG-ATCAGATCAGACCGAGGGTTATGGCAGCAGGATCGAT
* * * * * *** * * *
21557300 AACACGCAGAGGGGGTCTGAGCTGAT-CCTCAGTTTGCGCATTACACCTCTCCGACAAGCTCAGC
65 AGCACGCAG-GGGGGACCGAGC-GATCCCT-GGCTTGCGCATTTTGCCTCTCTGACCAGCTGAGC
*
21557364 GCCCGCACACTCGTTTCGTGGGTTGACTTAG
127 GCCCGCACACTCGTTTCGTGGGTTGGCTTAG
* * * * * *
21557395 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACCAAGGGTTACGACAGCAGGATCGAC
1 GCATATGGAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAGGGTTATGGCAGCAGGATCGAT
* * * * *
21557459 AGCGCGCAGGGGGGACCGAGTCGGTCCCTGGCTTACGCATTTTGCCTCTCTGACCAGTTGAGCAC
65 AGCACGCAGGGGGGACCGAG-CGATCCCTGGCTTGCGCATTTTGCCTCTCTGACCAGCTGAGCGC
* * *
21557524 CCACACACTCATTTCGTGGGTAGGCTTAG
129 CCGCACACTCGTTTCGTGGGTTGGCTTAG
*
21557553 GCATATGAAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
21557580 CATACGCAGT
Statistics
Matches: 271, Mismatches: 61, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 5 0.02
158 144 0.53
159 118 0.44
160 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCAGATCAGACCGAGGGTTATGGCAGCAGGATCGATA
GCACGCAGGGGGGACCGAGCGATCCCTGGCTTGCGCATTTTGCCTCTCTGACCAGCTGAGCGCCC
GCACACTCGTTTCGTGGGTTGGCTTAG
Found at i:21558315 original size:26 final size:26
Alignment explanation
Indices: 21558279--21558329 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21558269 TGGCTTAGGT
21558279 ATACGGAGTTCATTCC-ATGTCTAAGC
1 ATACGGAGTTCATTCCTA-GTCTAAGC
21558305 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCTAGTCTAAG
21558330 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCTAGTCTAAGC
Found at i:21558696 original size:26 final size:27
Alignment explanation
Indices: 21558660--21558711 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
21558650 GTTGACTTAG
21558660 GCATACAGAGTT-ATCCCCAGTCTAAA
1 GCATACAGAGTTCATCCCCAGTCTAAA
* * *
21558686 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21558712 GAATCAGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (27 bp):
GCATACAGAGTTCATCCCCAGTCTAAA
Done.