Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 207 of 402
Found at i:21558856 original size:724 final size:721
Alignment explanation
Indices: 21557358--21558859 Score: 1523
Period size: 724 Copynumber: 2.1 Consensus size: 721
21557348 CTCCGACAAG
* * * * * *
21557358 CTCAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
1 CTCAACGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCAATCTAAGA
* * * * * *
21557423 TCAGATCGGACCAAGGGTTACGACAGCAGGATCGACAGCGCGCAGGGGGGACCGAGTCGGTCCCT
66 TCAGACCGAACCAAGGGTTACGACAGCAAGATCGACAGCCCACAGGGGGGACCGAGCCGGTCCCT
* * * * *
21557488 GGCTTACGCATTTTGCCTCTCTGACCAGTTGAGCACCCACACACTCATTTCGTGGGTAGGCTTAG
131 GGCCTACGCATTCTGCCTATCCGACCAGCTGAGCACCCACACACTCATTTCGTGGGTAGGCTTAG
* * * *
21557553 GCATATGAAGTTCATTCCATGTCTAAGCATACGCAGTTCATTCCCATTCTAAGACTGAATCGGAC
196 GCATACGAAGTTCATTCCATGTCTAAGCATACGCAGTTCATTCCCAGTCTAAGACAGAACCGGAC
* * * * * *
21557618 CAAGGGTTACGATAGCAGGACCAGCAGCAAGATCGACAGCACGTAGGGGGGATCGGACTGATCCA
261 CAAGGGTTACGACAACAGGACCAGCAGCAAGATCAACAGCACGCAGAGGGGACCGGACTGATCCA
* * *
21557683 CGGCTTGCACATTTTGCCTTTCCGGCCAACTGAGCGCACGCATGCTCGTTCCGTGGGTTAACTTA
326 CAGCTTGCACATTTTACCTCTCCGGCCAACTGAGCGCACGCA-GCTCGTTCCGTGGGTTAACTTA
** * * *
21557748 GGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGTGTTGTGGCAGCAGGACCGAT
390 GGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTATGGCAGCAGGACAGAT
* * * *
21557813 AGTGGAATCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCAACTTGCGTATTATGCCTCTCCG
455 AGCGGAATCGACAGCACGCAGAGAGGGATCGGGTCGATCCCCAACTTGCGCATTATGCCTCTCAG
** * * *
21557878 ATCGGCCTCTCCGGCCGGTTGAGCTCCTACACGCTTGTTTCGTGGGTTGACTTAGGCAGACAGAG
520 ATCGGCCTCTCCGGCCGACTGAGCACCCACACGCTTGTTTCATGGGTTGACTTAGGCAGACAGAG
* * *
21557943 TTCATCGCCAGTCTAAGCATACAGAGTTCATTCCTAATCTAAGATCGGATCGAACCAAGCGTTAC
585 TTCATCCCCAGTCTAAGCATACAGAGTTCATTCCTAATCTAAGATCAGACCGAACCAAGCGTTAC
* * * * **
21558008 GGTAACAGGACTGATAGCATGCAGAAAGGGATCAGACCGATCCCTGGCTTGTGCATTATGCATCT
650 GG-AACAGGACAGATAACATGCAGAAAGGGACCAGACCGATCCCCGGCTTACGCATTATGCATCT
**
21558073 CCGGCCGA
714 CCCACCGA
*
21558081 CTCAACGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCAT-GCGGAGTTCATTCCCAATCTAAG
1 CTCAACGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATAG-GGAGTTCATTCCCAATCTAAG
* * ** *
21558145 ATCGGACCGAATCGAA-GGTTACGGTAGCAAGATCGACAGCCCACAGGGAGGGACCGGGCCGGT-
65 ATCAGACCGAA-CCAAGGGTTACGACAGCAAGATCGACAGCCCACAGGG-GGGACCGAGCCGGTC
* * ** * * *
21558208 CCTCGGCCTGCGCATTCTGCCTATCCGGCC-GACTGAGCACCCGTACTCTCGTTTCGTGGGTTGG
128 CCT-GGCCTACGCATTCTGCCTATCCGACCAG-CTGAGCACCCACACACTCATTTCGTGGGTAGG
* * * *
21558272 CTTAGGTATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAG-A
191 CTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGCAGTTCATTCCCAGTCTAAGA-CAGAA
* ** * * * * *
21558336 CCGGATCAAGGGTTGTGGCAATAGGACCAGCGGCAGGATCAACAGCACGCAGAGGGGACCAGGTC
255 CCGGACCAAGGGTTACGACAACAGGACCAGCAGCAAGATCAACAGCACGCAGAGGGGACC-GGAC
* ** ** **
21558401 -GATCCCCAGCTTGCACATTTTACCTCTCCGGCCAACCTCTTGC-CTGGACA-CTCGTTTTGTGG
319 TGATCCACAGCTTGCACATTTTACCTCTCCGGCCAA-CT-GAGCGCACG-CAGCTCGTTCCGTGG
** * * *
21558463 GTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCAAGGGTTATGGTAGC
381 GTTAACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTATGGCAGC
* * * * * **
21558528 AAGGACAGGTAGCGGGATC-ATCAGCATGTAGAGAGGGATCGGGTTGATCCCCGGCTTGCGCATT
446 -AGGACAGATAGCGGAATCGA-CAGCACGCAGAGAGGGATCGGGTCGATCCCCAACTTGCGCATT
* * *
21558592 ATG-CTCTTCAG-TTGGCCCTCTCTGGCCGACTGAGCACGCCGCACCGCTTGTTTCATGGGTTGA
509 ATGCCTC-TCAGATCGG-CCTCTCCGGCCGACTGAGCAC-CCACA-CGCTTGTTTCATGGGTTGA
* * *
21558655 CTTAGGCATACAGAGTT-ATCCCCAGTCTAAAGCATACGGAGTTCATTCGC-AGTCTAAGAATCA
570 CTTAGGCAGACAGAGTTCATCCCCAGTCT-AAGCATACAGAGTTCATTC-CTAATCTAAG-ATCA
* ** * * * ** * *
21558718 GACCGGACTGAGGGTTAC-G-ACAGTA-AGGTCAACA-GCACGTAGGGGGACCGGACGGATCCCC
632 GACCGAACCAAGCGTTACGGAACAGGACAGAT-AACATGCA-G-AAAGGGACCAGACCGATCCCC
* * * *
21558779 GGCTTACGTATTCT-CCTCTCCCACCGG
694 GGCTTACGCATTATGCATCTCCCACCGA
* * * * *
21558806 CTGAATGCCTGCACG-TCCATTTCGTGGGTTGGCTTA-GCATAGGGAGTTCATTCC
1 CTCAACGCCCGAACGCT-CATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCC
21558860 ATGTCTAGCC
Statistics
Matches: 632, Mismatches: 123, Indels: 47
0.79 0.15 0.06
Matches are distributed among these distances:
723 97 0.15
724 287 0.45
725 129 0.20
726 42 0.07
727 60 0.09
728 17 0.03
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.23
Consensus pattern (721 bp):
CTCAACGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCAATCTAAGA
TCAGACCGAACCAAGGGTTACGACAGCAAGATCGACAGCCCACAGGGGGGACCGAGCCGGTCCCT
GGCCTACGCATTCTGCCTATCCGACCAGCTGAGCACCCACACACTCATTTCGTGGGTAGGCTTAG
GCATACGAAGTTCATTCCATGTCTAAGCATACGCAGTTCATTCCCAGTCTAAGACAGAACCGGAC
CAAGGGTTACGACAACAGGACCAGCAGCAAGATCAACAGCACGCAGAGGGGACCGGACTGATCCA
CAGCTTGCACATTTTACCTCTCCGGCCAACTGAGCGCACGCAGCTCGTTCCGTGGGTTAACTTAG
GCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTATGGCAGCAGGACAGATA
GCGGAATCGACAGCACGCAGAGAGGGATCGGGTCGATCCCCAACTTGCGCATTATGCCTCTCAGA
TCGGCCTCTCCGGCCGACTGAGCACCCACACGCTTGTTTCATGGGTTGACTTAGGCAGACAGAGT
TCATCCCCAGTCTAAGCATACAGAGTTCATTCCTAATCTAAGATCAGACCGAACCAAGCGTTACG
GAACAGGACAGATAACATGCAGAAAGGGACCAGACCGATCCCCGGCTTACGCATTATGCATCTCC
CACCGA
Found at i:21561917 original size:353 final size:352
Alignment explanation
Indices: 21561252--21561904 Score: 753
Period size: 353 Copynumber: 1.9 Consensus size: 352
21561242 CCCGGCTTGT
* * * *
21561252 GCATTCTACCTCTCCAGTCGACTGAACGCCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACG
1 GCATTCTACCTCTCCAGCCGACTGAACGCCCACACGCTCGTTTCATGGGTTAGCTGAGGCATACG
* * * * *
21561317 GAGTTCATTCCATGTCTAAGAATAGGAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTA
66 GAGTTCATTCCATGCCTAAGAATAGAAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTA
* * * * * * *
21561382 CCGGTAGCAGGACCAATAGCAGGATCGACAGCACGCAGGGGGGATCAGGCCGATCCTCGGCTTAC
131 CCAGCAGCAGGACCAACAGCAGGATCGACAGCACACAGGGGGGACCAGGCCGATCCCCAGCTTAC
* * * *
21561447 GCATTCTACCTCTCCAGCCGACTGAGTGCCTGTACGCTCATTTCATGGGTTGACTTAGGTATACG
196 GCATTCTACCTCTCCAGCCGACTGAGCGCCTGCACACTCATTTCATGGGTTGACTTAGGCATACG
***
21561512 ATGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTACGACAGCAGGATTGGTATAAAGCA
261 ATGTTCATTCCCAGTCTAAGACCAGACCAGACTGAGGGTTACGACAGCAGGATTGGTATAAAGCA
21561577 GGGGGGTCGGGCCAGTCCCTGGCTTAC
326 GGGGGGTCGGGCCAGTCCCTGGCTTAC
* * *
21561604 GCATTCTGCCTCTCC-GACCGACTGAACGCCCACACGTTCGTTTCATGGGTTGGCTGAGGCATAC
1 GCATTCTACCTCTCCAG-CCGACTGAACGCCCACACGCTCGTTTCATGGGTTAGCTGAGGCATAC
* *
21561668 GGAGTTTATTCCATGCCTAAGCAA-ATGAAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAGG
65 GGAGTTCATTCCATGCCTAAG-AATA-GAAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGG
** * * ** * * *
21561732 GTTGCAGCAGCAGGACCAGCAGTAGGATCGGTAGCACACAGGGGGGCCCGGGTCGATCCCCAGCT
128 GTACCAGCAGCAGGACCAACAGCAGGATCGACAGCACACAGGGGGGACCAGGCCGATCCCCAGCT
* * * ** * *
21561797 TGCGCATTCTTCCTCTCTAGCCGGTTGAGCG-CTCGCACACTCGTTTCATTGGTT-AGCTTAGGC
193 TACGCATTCTACCTCTCCAGCCGACTGAGCGCCT-GCACACTCATTTCATGGGTTGA-CTTAGGC
* * * *
21561860 ATATGGA-GTTTATT-CCATGTCTAAGCCCCAG-CCAGACTGATGGTT
256 ATA-CGATGTTCATTCCCA-GTCTAAG-ACCAGACCAGACTGAGGGTT
21561905 GTGGCAGCAG
Statistics
Matches: 245, Mismatches: 48, Indels: 15
0.80 0.16 0.05
Matches are distributed among these distances:
351 1 0.00
352 81 0.33
353 160 0.65
354 3 0.01
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.24
Consensus pattern (352 bp):
GCATTCTACCTCTCCAGCCGACTGAACGCCCACACGCTCGTTTCATGGGTTAGCTGAGGCATACG
GAGTTCATTCCATGCCTAAGAATAGAAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTA
CCAGCAGCAGGACCAACAGCAGGATCGACAGCACACAGGGGGGACCAGGCCGATCCCCAGCTTAC
GCATTCTACCTCTCCAGCCGACTGAGCGCCTGCACACTCATTTCATGGGTTGACTTAGGCATACG
ATGTTCATTCCCAGTCTAAGACCAGACCAGACTGAGGGTTACGACAGCAGGATTGGTATAAAGCA
GGGGGGTCGGGCCAGTCCCTGGCTTAC
Found at i:21563608 original size:26 final size:26
Alignment explanation
Indices: 21563558--21563610 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
21563548 GTTGGCTTAG
*
21563558 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
21563584 GCATAC-AGAGTTCATTCCCA-ATCTAA
1 GCATACGA-AGTTCATT-CCATATCTAA
21563610 G
1 G
21563611 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:21563968 original size:26 final size:26
Alignment explanation
Indices: 21563938--21563990 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21563928 GTTGACTTAG
21563938 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
21563964 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21563990 G
1 G
21563991 GTCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21564259 original size:158 final size:158
Alignment explanation
Indices: 21563964--21564306 Score: 404
Period size: 158 Copynumber: 2.2 Consensus size: 158
21563954 CCCAGTCTAA
* * * *
21563964 GCATACGGAGTTCATTCCCAGTCTAAGGTCAGACCGGATCGAGGGTTGCAGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAACAGGATCGATA
* * * * * * *
21564029 GCACACAGGGGGGACTGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGTCGACTCAACACC
66 GCACACAGGAGGGACAGGGCAGATCCCCGACTTGCGCATTATACCTCTCCGATCGACTCAACACC
21564094 CAAATGCTCATTTCGTGGGTTGACTTAG
131 CAAATGCTCATTTCGTGGGTTGACTTAG
* *
21564122 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGC-GACAACAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAG-CAACAGGATCGAT
* * * * * *
21564186 AGCACGCAGGAGGGACAGGGTCAG-TCCCTGACTTGCGCATTCTACCTCTCCGATCGATTGAGCA
65 AGCACACAGGAGGGACAGGG-CAGATCCCCGACTTGCGCATTATACCTCTCCGATCGACTCAACA
**** * *
21564250 CTTGTATGCTCATTTTGTGGGTTGGCTTAG
129 CCCAAATGCTCATTTCGTGGGTTGACTTAG
*
21564280 GCATACGGAGTTTATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
21564307 TATACGAAGT
Statistics
Matches: 155, Mismatches: 27, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
157 4 0.03
158 149 0.96
159 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAACAGGATCGATA
GCACACAGGAGGGACAGGGCAGATCCCCGACTTGCGCATTATACCTCTCCGATCGACTCAACACC
CAAATGCTCATTTCGTGGGTTGACTTAG
Found at i:21564322 original size:26 final size:25
Alignment explanation
Indices: 21564282--21564331 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
21564272 TGGCTTAGGC
* *
21564282 ATACGGAGTTTATTCCATGTCTAAGT
1 ATACGAAGTTCATTCCA-GTCTAAGT
*
21564308 ATACGAAGTTCATTCTAGTCTAAG
1 ATACGAAGTTCATTCCAGTCTAAG
21564332 ATCAGACCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (25 bp):
ATACGAAGTTCATTCCAGTCTAAGT
Found at i:21565265 original size:26 final size:26
Alignment explanation
Indices: 21565229--21565281 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21565219 GTTGACTTAG
*
21565229 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
*
21565255 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
21565281 G
1 G
21565282 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACCGAGTTCATCCCCAGTCTAA
Found at i:21565974 original size:26 final size:26
Alignment explanation
Indices: 21565925--21565977 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21565915 GTTGACTTAG
* *
21565925 GCATACGGAGTTCATCCCCGGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
*
21565951 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
21565977 G
1 G
21565978 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:21566137 original size:26 final size:26
Alignment explanation
Indices: 21566108--21566160 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21566098 GTTAACTTAG
21566108 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
21566134 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21566160 G
1 G
21566161 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21566318 original size:184 final size:182
Alignment explanation
Indices: 21565888--21566318 Score: 439
Period size: 183 Copynumber: 2.3 Consensus size: 182
21565878 CTCCGGTTGG
** *
21565888 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG-GAGTTCATCCCCGGTCTAAG
1 CTGAGCACCCATACGCTCGTTTCGTGGGTTGACTTAGGCATA-GAGAGTTCAT-CCCAGTCTAAG
* * *
21565952 CATACGGAGTTCATTCACAGTCTAAGATCGGACTGGATCGAAGGTTGCGACAACAGGATCGGCAA
64 CATACGGAGTTCATTCACAGTCTAAGATCGAACTGGATCGAAGGTTACGACAACAGGATCAGCAA
* * * * * *
21566017 CATGTAGGGGGATCAAGCTGATCCCCGACTTACGCATTCTGCCTCTTCGGCGGA
129 CACGTAAGGGGATCAAGCCGATCCCAGACTTACGCATTCGGCCTCTTCGCCGGA
* * *
21566071 CTGAATGC-CCGCAT--GCTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATCCCCAGTCTA
1 CTG-A-GCACC-CATACGCTCGTTTCGTGGGTTGACTTAGGCATAGAGAGTTCAT-CCCAGTCTA
* * * **
21566133 AGCATATGGAGTTCATTCCCAGTCTAAGATCGAA-TCGGAT-GAAGGGTTACGATAGTAGGATCA
62 AGCATACGGAGTTCATTCACAGTCTAAGATCGAACT-GGATCGAA-GGTTACGACAACAGGATCA
* *
21566196 GCAGCACGTATAGGGGATCGAGCCGATTCCCAG-CTTACGCATTCGGCCTC-TCTGACCGG-
125 GCAACACGTA-AGGGGATCAAGCCGA-TCCCAGACTTACGCATTCGGCCTCTTC-G-CCGGA
* * * * *
21566255 TTGAGCACCCATACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAG
1 CTGAGCACCCATACGCTCGTTTCGTGGGTTGACTTAGGCATAGAGAGTTCATCCCA-GTCTAAG
21566319 ACCCAGCTAG
Statistics
Matches: 204, Mismatches: 30, Indels: 27
0.78 0.11 0.10
Matches are distributed among these distances:
182 9 0.04
183 111 0.54
184 73 0.36
185 11 0.05
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (182 bp):
CTGAGCACCCATACGCTCGTTTCGTGGGTTGACTTAGGCATAGAGAGTTCATCCCAGTCTAAGCA
TACGGAGTTCATTCACAGTCTAAGATCGAACTGGATCGAAGGTTACGACAACAGGATCAGCAACA
CGTAAGGGGATCAAGCCGATCCCAGACTTACGCATTCGGCCTCTTCGCCGGA
Found at i:21566450 original size:159 final size:159
Alignment explanation
Indices: 21566272--21566636 Score: 427
Period size: 159 Copynumber: 2.3 Consensus size: 159
21566262 CCCATACGCC
* * *
21566272 CGTTTCATGGGTTGGCTTAGGCATA-GAGAGTTCATTCCATGTCTAAGACCCAG-CTAGACCAAT
1 CGTTTCGTGGGTTGGCTTAGGCATACG-GAGTTCATTCCATGTCTAAGA-CCAGACCAGACCAAG
* * * * *
21566335 GGTTGTGGCAGCGGGATAGGCAGCACATAGAGG-GGGA-CTGGGTCGATCCCCGGCTTGCGCATT
64 GGTTGTGGCAGCAGGATAGACAGCACACAG-GGAGGGATC-GGGTCGACCCCCAGCTTGCGCATT
* * *
21566398 ATGCCTCTCCGA-TCGACTCAGTGCACGAACTCT
127 ATGCCTCTCCGACT-GACTAAGGGCACGAACACT
* * * *
21566431 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCAGACCAGATCGAGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCAGACCAGACCAAGG
* * * * *
21566495 GTTGTGGCAGCAGGATCGACAGCACGCAGGGAGGGATCGGGTCGGCCCCCAGCTTGCGGATTCTG
65 GTTGTGGCAGCAGGATAGACAGCACACAGGGAGGGATCGGGTCGACCCCCAGCTTGCGCATTATG
* *
21566560 CCTCTCCGACTGACTAAGGGCTCGAACAGT
130 CCTCTCCGACTGACTAAGGGCACGAACACT
*
21566590 CGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
21566637 CATACGGAGT
Statistics
Matches: 175, Mismatches: 24, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
158 6 0.03
159 165 0.94
160 4 0.02
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.25
Consensus pattern (159 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCAAGGG
TTGTGGCAGCAGGATAGACAGCACACAGGGAGGGATCGGGTCGACCCCCAGCTTGCGCATTATGC
CTCTCCGACTGACTAAGGGCACGAACACT
Found at i:21566646 original size:26 final size:26
Alignment explanation
Indices: 21566610--21566662 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21566600 GTTGGCTTAG
* *
21566610 GCATATGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCAGTCCTA-GTCTAA
21566636 GCATACGGAGTTCAGTCCTAGTCTAA
1 GCATACGGAGTTCAGTCCTAGTCTAA
21566662 G
1 G
21566663 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCTAGTCTAA
Found at i:21566849 original size:26 final size:26
Alignment explanation
Indices: 21566820--21566872 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21566810 GTTAACTTAG
21566820 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
** *
21566846 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
21566872 G
1 G
21566873 ATCTAATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:21567761 original size:25 final size:26
Alignment explanation
Indices: 21567726--21567777 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
21567716 GTTGACTTAG
21567726 GCATACAAAGTTCA-TCACAGTCTAA
1 GCATACAAAGTTCATTCACAGTCTAA
* *
21567751 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCACAGTCTAA
21567777 G
1 G
21567778 ATCGGACAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATTCACAGTCTAA
Found at i:21568056 original size:159 final size:158
Alignment explanation
Indices: 21567893--21568254 Score: 370
Period size: 159 Copynumber: 2.3 Consensus size: 158
21567883 CACGCCCGTC
* *
21567893 TCGTGGGTTGGTTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCACCCGAACTGAGGGTTGT
1 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCCCCA-CCGAACTGAGGGTTGT
*** * *
21567958 GGCAGTGGGACCGATAGCACGCAAAAGGGGATCGGGCCGAT-CCTCGACTTGCACATTATGCCTC
65 GGCAGCAAGACCGACAGCACGCAAAAGGGGATCGGGCCGATCCCT-GACTTGCACATTATACCTC
*
21568022 TCTAGCCGGCTCAGCACCCGAACGCTCATT
129 TCCAGCCGGCTCAGCACCCGAACGCTCATT
* * * * ** *
21568052 TCGTGGGTTGACTTAGGCATACAGAATTCATTCCCAA--TCTAAGATCGGACCGGACTGAGGGTT
1 TCGTGGGTTGGCTTAGGCATACGGAGTTCATT--CAATGTCTAAG-CCCCACCGAACTGAGGGTT
* ** * * **
21568115 GTGGCAGCAAGATCGACAGCACGCAAGGGGGGATCGGGTCGGTCCCTGACTTGTGCATTATACCT
63 GTGGCAGCAAGACCGACAGCACGCAAAAGGGGATCGGGCCGATCCCTGACTTGCACATTATACCT
* * * * * * *
21568180 CTCCGGTCGGTTGAGCGCCCGCACGCTCGTT
128 CTCCAGCCGGCTCAGCACCCGAACGCTCATT
* * *
21568211 TCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGC
21568255 ATACGGAGTT
Statistics
Matches: 161, Mismatches: 36, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
159 151 0.94
160 5 0.03
161 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCCCCACCGAACTGAGGGTTGTG
GCAGCAAGACCGACAGCACGCAAAAGGGGATCGGGCCGATCCCTGACTTGCACATTATACCTCTC
CAGCCGGCTCAGCACCCGAACGCTCATT
Found at i:21568257 original size:26 final size:26
Alignment explanation
Indices: 21568227--21568279 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21568217 GTTGGCTTAG
21568227 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21568253 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21568279 G
1 G
21568280 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21568464 original size:26 final size:26
Alignment explanation
Indices: 21568435--21568512 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
21568425 GTTGACTTAG
*
21568435 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21568461 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
21568487 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21568513 CATCAGACCA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21568839 original size:26 final size:25
Alignment explanation
Indices: 21568803--21568854 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
21568793 GTTGGCTTAG
*
21568803 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCC-AGTCTAA
21568829 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
21568854 G
1 G
21568855 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:21569551 original size:26 final size:26
Alignment explanation
Indices: 21569522--21569574 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21569512 GTTGACTTAG
*
21569522 GCATACAGAGTTTA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
**
21569548 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21569574 G
1 G
21569575 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21570071 original size:26 final size:26
Alignment explanation
Indices: 21570021--21570073 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21570011 GTTGGCTTAT
*
21570021 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
21570047 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
21570073 G
1 G
21570074 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:21570710 original size:158 final size:157
Alignment explanation
Indices: 21570541--21570903 Score: 383
Period size: 157 Copynumber: 2.3 Consensus size: 157
21570531 CCCGCACGCC
* * * *
21570541 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGATCGAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACTGGATCGAGGG
* * * *
21570606 TT-CTGGCAGCGGGACCGACAGCATGCAGAGGGGACC-GAGCTGATCCCCAGCTTATGCATTATG
66 TTAC--GCAGCAGGACCGACAGCAAGCAGAGGGGACCAG-GCTGATCCCCAGCTTACGCATTATA
* * *
21570669 CCTC-CCTGGCCTGCTCAGCAATCGAACACT
128 CCTCTCC-AGCCGGCTCAGCAACCGAACACT
* **
21570699 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCAAACTGGATCGAGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCAAACTGGATCGAGG
* * * * * * * * * *
21570763 GTTACGTAGTAGGATCGACAGTAAGCAGGGGGGACCAGGCTGGTCCTCGGCTTGCGCATTCTACC
65 GTTACGCAGCAGGACCGACAGCAAGCAGAGGGGACCAGGCTGATCCCCAGCTTACGCATTATACC
* * ** *
21570828 TCTCCAGCCGGTTGAGCTCCCGCACACT
130 TCTCCAGCCGGCTCAGCAACCGAACACT
*
21570856 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
21570904 ATATAGAGTT
Statistics
Matches: 168, Mismatches: 32, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
157 105 0.62
158 62 0.37
159 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACTGGATCGAGGG
TTACGCAGCAGGACCGACAGCAAGCAGAGGGGACCAGGCTGATCCCCAGCTTACGCATTATACCT
CTCCAGCCGGCTCAGCAACCGAACACT
Found at i:21571114 original size:26 final size:26
Alignment explanation
Indices: 21571085--21571137 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21571075 GTTGACTTAG
21571085 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21571111 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21571137 G
1 G
21571138 ATCGAATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21571433 original size:355 final size:356
Alignment explanation
Indices: 21571057--21571702 Score: 888
Period size: 355 Copynumber: 1.8 Consensus size: 356
21571047 GCTAAGCTCT
* * * *
21571057 CGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA-G
1 CGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGCTCATCCCCAGTCTAAACATAC-AATG
** * ** * * *
21571121 TTCATCCCCAGTCTAAGATC-GAATTGGACTGAGGGTTGCAGCAGTAGGATCGGCAGCACGCAGG
65 TTCATCCCCAGTCTAAGATCAG-ATCAGACCGAGGGTTGCAGCAACAAGATCGACAGCACACAGG
* ** * *
21571185 GGGGACCAAGCTGATCCTTGACTTGTGCATTCTGCCTCTCCAGCCAGCTGAGCGCCCGCA--CAT
129 GGGGACCAAGCTGATCCTCGACTTACGCATTCTACCTCTCCAGCCAGCTGAGCGCCCGCATGC-C
* *
21571248 TCGTTTCGTGTGTTGGATTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
193 T-GTTTCGTGGGTTGGATTAGGCATACAGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGG
* *
21571313 GTTGT-GCAGCAGGATTGGCAGCACGCAGAGGGGGGCTGGGCTGATCCCTGGCTTATGCATTATG
257 GTTGTCGCAGCAGGATCGACAGCACGCAGAGGGGGGCTGGGCTGATCCCTGGCTTATGCATTATG
21571377 CCTTTCTAATTGGCCTCTCCGATCCGTTGAGCACC
322 CCTTTCTAATTGGCCTCTCCGATCCGTTGAGCACC
21571412 CGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGCTCATCCCCAGTCTAAACATACAATGT
1 CGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGCTCATCCCCAGTCTAAACATACAATGT
* * *
21571477 TCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAACAAGATCGATAGCACACAGGGG
66 TCATCCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCAGCAACAAGATCGACAGCACACAGGGG
* * * * * *
21571542 GGATCGAGCTGATCCTCGGCTTACGCATTCTACCTTTCCTGCCAGCTGAGCGTCCGCATGCCTGT
131 GGACCAAGCTGATCCTCGACTTACGCATTCTACCTCTCCAGCCAGCTGAGCGCCCGCATGCCTGT
* ** *
21571607 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCTGGACCGAGGGTTG
196 TTCGTGGGTTGGATTAGGCATACAGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTG
* * *
21571672 TCGTAGCGGGATCGACAGCGCGCAGAGGGGG
261 TCGCAGCAGGATCGACAGCACGCAGAGGGGG
21571703 ACCGAGCCGA
Statistics
Matches: 249, Mismatches: 37, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
354 1 0.00
355 221 0.89
356 26 0.10
357 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (356 bp):
CGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGCTCATCCCCAGTCTAAACATACAATGT
TCATCCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCAGCAACAAGATCGACAGCACACAGGGG
GGACCAAGCTGATCCTCGACTTACGCATTCTACCTCTCCAGCCAGCTGAGCGCCCGCATGCCTGT
TTCGTGGGTTGGATTAGGCATACAGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTG
TCGCAGCAGGATCGACAGCACGCAGAGGGGGGCTGGGCTGATCCCTGGCTTATGCATTATGCCTT
TCTAATTGGCCTCTCCGATCCGTTGAGCACC
Found at i:21571948 original size:26 final size:24
Alignment explanation
Indices: 21571919--21571968 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
21571909 GCATGCGAAA
21571919 TTCATCCCCAATCTAAGCATACGGAG
1 TTCATCCCCAATCTAAG-AT-CGGAG
* *
21571945 TTCATTCCCAGTCTAAGATCGGAG
1 TTCATCCCCAATCTAAGATCGGAG
21571969 CGGACCGAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.23
25 2 0.09
26 15 0.68
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (24 bp):
TTCATCCCCAATCTAAGATCGGAG
Found at i:21572791 original size:159 final size:157
Alignment explanation
Indices: 21572403--21572898 Score: 459
Period size: 159 Copynumber: 3.1 Consensus size: 157
21572393 TAAGCGTATA
* * * *
21572403 GAGTTCATTCCCA-GTCTAAGATC-GAATCGGACTGAGGGTTGCGACAGCAAGATCGACAGCACG
1 GAGTTCATT-CCATGTCTAAGATCAG-ACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACG
* * * * *
21572466 CAGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCAC
64 CAGGGGGGATC-GG-TGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTAAGCGCCTGTAC
* ** * * *
21572531 -CCCCCTTTCATGGGTTGGCTTAGGAATAGG
127 GCTCATTTTCGTGGGTTGGCTTAGGCATACG
** * * ** *
21572561 GAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGATTGTGGTAGCAGGACCTG-CAGCACG
1 GAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGCGACAGCAGGATC-GACAGCACG
* * * * * *
21572624 CAGAGGGGGACCAAGTGGATCCCCGGCTTGTGCATTATGCCTCTTCGGCCAGCTCAGCGCTTGTA
64 CAG-GGGGGATC-GGT-GATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTAAGCGCCTGTA
* *
21572689 CGCTCATTTTCGTGGGTTGACTTATGCATACG
126 CGCTCATTTTCGTGGGTTGGCTTAGGCATACG
* * * *
21572721 GAGTTCATTCC-TAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGGATCGACAACATGT
1 GAGTTCATTCCAT-GTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGC
* * * *
21572785 AGGGGGGATCGGTCCGATCCCTGGCTTGCGCATTCTGCCCCATCGGCCAGCTAAGTGCCTGTACG
65 AGGGGGGATCGGT--GATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTAAGCGCCTGTACG
*
21572850 CT-AGTTTT-GTGGGTTGGCTTGGGCATACG
128 CTCA-TTTTCGTGGGTTGGCTTAGGCATACG
*
21572879 GAGTTCAGTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
21572899 CATACGGAGT
Statistics
Matches: 269, Mismatches: 56, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.01
158 84 0.31
159 112 0.42
160 70 0.26
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCA
GGGGGGATCGGTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTAAGCGCCTGTACGCTC
ATTTTCGTGGGTTGGCTTAGGCATACG
Found at i:21572901 original size:26 final size:26
Alignment explanation
Indices: 21572872--21572924 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21572862 GTTGGCTTGG
21572872 GCATACGGAGTTCAGT-CCATGTCTAA
1 GCATACGGAGTTCAGTCCCA-GTCTAA
*
21572898 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
21572924 G
1 G
21572925 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:21573604 original size:26 final size:26
Alignment explanation
Indices: 21573567--21573619 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21573557 GTTGACTTAG
*
21573567 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*
21573593 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
21573619 G
1 G
21573620 ATCGGACAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:21573939 original size:26 final size:26
Alignment explanation
Indices: 21573909--21573961 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21573899 GTTGGCTTAG
*
21573909 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
21573935 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21573961 G
1 G
21573962 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21575005 original size:26 final size:26
Alignment explanation
Indices: 21574969--21575020 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
21574959 TTGACTTAGA
21574969 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
21574995 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
21575021 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:21575342 original size:26 final size:26
Alignment explanation
Indices: 21575312--21575362 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21575302 TTGGCTTAGG
* *
21575312 CATACGGAGTTCATTCCCTGTCTAAC
1 CATACAGAGTTCATTCCCAGTCTAAC
21575338 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
21575363 AATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAC
Found at i:21575895 original size:26 final size:26
Alignment explanation
Indices: 21575859--21575909 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21575849 TTGACTTAGA
21575859 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
* *
21575885 CATACGGAGTTCATTCCTAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
21575910 TATAGAACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:21576174 original size:159 final size:157
Alignment explanation
Indices: 21575956--21576387 Score: 492
Period size: 159 Copynumber: 2.7 Consensus size: 157
21575946 GTAGCACGCA
* * * * * *
21575956 AGGGGGATCGGATCGATCCCCGGCTTGATCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCGCGC
1 AGGGGGATCGGGTCGATCCCCAGCTTGCTCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGC
* * *
21576021 -CAATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGA
66 TC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGCACCAGACCAGACCGA
***
21576084 GGGTTGTGGCAGCAGGACCGACAGCACACGG
129 GGGTTGACACAGCAGGACCGACAG--CACGG
* * * *
21576115 AGGGGGATCGGGTCGATCCCCAGCTTGCTCATTATGCCTCTCTGGTCGGCTCAGTGCCCGCACGC
1 AGGGGGATCGGGTCGATCCCCAGCTTGCTCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGC
* * * *
21576180 TCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG-ATCAGACCGGACCGAG
66 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGCACCAGACCAGACCGAG
* * *
21576244 GGTTGACACAGTAGGATCGACAGCACGT
130 GGTTGACACAGCAGGACCGACAGCACGG
* * * * * * *
21576272 AGGGGGGATCAGGTCGATCCCCAGCTTGCGCATTCTGCCTTTCCAGTCGGTTGAGCACCCGTACG
1 A-GGGGGATCGGGTCGATCCCCAGCTTGCTCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACG
* *
21576337 CTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
65 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCAGTCTAAGCA
21576388 TACGGAGTTC
Statistics
Matches: 229, Mismatches: 38, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
157 5 0.02
158 99 0.43
159 121 0.53
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
AGGGGGATCGGGTCGATCCCCAGCTTGCTCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCACCAGACCAGACCGAGG
GTTGACACAGCAGGACCGACAGCACGG
Found at i:21576388 original size:26 final size:26
Alignment explanation
Indices: 21576359--21576411 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21576349 GTTGGCTTAG
21576359 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21576385 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21576411 G
1 G
21576412 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21576512 original size:184 final size:184
Alignment explanation
Indices: 21576201--21576570 Score: 505
Period size: 184 Copynumber: 2.0 Consensus size: 184
21576191 GTTGACTTAG
* *
21576201 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGACACAGTAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGACACAGTAGGATCGACA
* * * *
21576266 GCACGTAGGGGGGATCAGGTCGATCCCCAGCTTGCGCATTCTGCCTTTCCAGTCGGTTGAGCACC
66 GCACGCAGGGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTGCCTTACCAGTCGATTGAGCACC
* *
21576331 CGTACG-CTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCA-GTCTAA
131 CGCACGTCT-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-CCCATGTCTAA
* * * *
21576385 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTT-ACGGCAGTAGGATCGAC
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGAC-ACAGTAGGATCGAC
* * * * *
21576449 AGCATGCAGGGGGGACCTGGTCGATTCCCGGCTTGCGCATTCTGCCTCTACGA-TCGATTGAGCA
65 AGCACGCAGGGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTGCCT-TACCAGTCGATTGAGCA
* *
21576513 CCCGCACGTCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
129 CCCGCACGTCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAA
21576569 GC
1 GC
21576571 CCCAGTCGGA
Statistics
Matches: 163, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
183 5 0.03
184 153 0.94
185 5 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (184 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGACACAGTAGGATCGACA
GCACGCAGGGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTGCCTTACCAGTCGATTGAGCACC
CGCACGTCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAA
Found at i:21576775 original size:501 final size:494
Alignment explanation
Indices: 21575822--21577438 Score: 1623
Period size: 501 Copynumber: 3.2 Consensus size: 494
21575812 TCTGGTCGGC
* * * *
21575822 TGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGACATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* * * * *
21575887 TACGGAGTTCATTCCTAGTCTAATAT-AGAACTGGACCAAGGTTTACGGCAGCAGGATC-AGTAG
66 TACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCAAGGGTTACGGCAGCAGGATCGA-TAG
* * * ** * * *
21575950 CACGCAAGGGGGATCGGATCGATCCCCGGCTTGATCATTCTGCCTCTCCGGCCAGCTGAGCGCCC
129 CATGCAGGGGGGACCGG-TCGATCCCCGGCTTGCGCATTCTGCCTCT-CGACGA-CTGAGCACCC
* * *
21576015 GCGCGCCAATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
191 GCACGCCAATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGA
* * * * *
21576080 CCGAGGGTTGTGGCAG-CAGGACCGACAGCACACGGAGGGGGATCGGGTCGATCCCCAGCTTGCT
256 CCGAGGGTTGTGGCAGTGA-GACTGACAGCACGCAGA-GGGGAT-AGGTCGATCCCCAGCTTG-T
* *
21576144 -CATTATGCCTCTCTGGTCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
317 GCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
21576208 AAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAC-ACAGTAGGATCGACAGCACGT
382 AAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-ACGATAGTAGGATCGACAGCACGT
*
21576272 AGGGGGGATCAGGTCGATCCCCAGCTTGCGCATTCTGCCTTTCCAGTCGGT
446 AGGGGGGA-CAGGTCGATCCCCAGCTTGCGCATTCTGCCTTTCCA-CCGGT
* *
21576323 TGAGCACCCGTACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* * *
21576388 TACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTACGGCAGTAGGATCGACAGCA
66 TACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGGCAGCAGGATCGATAGCA
* *
21576453 TGCAGGGGGGACCTGGTCGATTCCCGGCTTGCGCATTCTGCCTCTACGATCGATTGAGCACCCGC
131 TGCAGGGGGGACC-GGTCGATCCCCGGCTTGCGCATTCTGCCTCT-CGA-CGACTGAGCACCCGC
* ** *
21576518 ACGTCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACC
193 ACGCCAATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACC
* * * *
21576583 GAGGGTTGTGGCAGTGAGATTGATAGCACGCAGAGGGGTACTAGGTCGATCCCTAGCTTGTGCGT
258 GAGGGTTGTGGCAGTGAGACTGACAGCACGCAGAGGGG-A-TAGGTCGATCCCCAGCTTGTGCAT
*
21576648 TATGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACGAAGT
321 TATGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGT
* * * *
21576713 TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGTAGGATTGATAGCACGTAGGGG
386 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGATAGTAGGATCGACAGCACGTAGGGG
* * * * *
21576778 GGACTGGGTCGATCCCGAGCTTGTGCATTTTGCCTCTTCGACCGGT
451 GGAC-AGGTCGATCCCCAGCTTGCGCATTCTGCCT-TTCCACCGGT
* **
21576824 TGAACGCCCACACGCTCGTTTCGTAGGTTGGCTTAGGCATAGGGTGTTCATTCCATGTCTAAGCA
1 TGAGCGCCCGTACGCTCGTTTCGT--G--GG--T-----T---G-G--C-TT--A-G-----GCA
* * * * *
21576889 TACGGAGTTCATTCCCAGTCTAAGCAAACAGAGTTCATTCCCAGTCTCAGATCGGATCGGACCGA
40 TACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAA
* ** * * * * *
21576954 GAGTTGTGGTAGCAGGATTGATAGCATGCAGGGAGGACCGGACTGATCCCCGACTTGCGCATTCT
105 GGGTTACGGCAGCAGGATCGATAGCATGCAGGGGGGACCGGTC-GATCCCCGGCTTGCGCATTCT
* * * *
21577019 GCCTCTCTGACTGGCTGAGCACCCACACGCCCATTTCGTAGGTTGGCTTAGGCATAGGGAGTTCA
169 GCCTCTC-GAC-GACTGAGCACCCGCACGCCAATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
*
21577084 TTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGTCG-GAGT-AGCAGCACGCAGAGGG
232 TTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGT-GAGACTGA-CAGCACGCAGA-GG
* * * * * * * * * * * *
21577147 GGGTCGGGCTGATCCCCAGCTTGCGTATTATTCCTCTTCAGTCGGATCAGCACCCGCACACTCAT
294 GGATAGGTC-GATCCCCAGCTTGTGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGT
* * * * * * * * *
21577212 TTCGTGGGTTGACTTATGCTTACGGAGTTCATTCCTAGTCTAAGATTAGATCAAACCGAGGATTG
358 TTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTA
* * * * * * * * *
21577277 TGATAGCAAGATCGACAGGACGCAGAAGGGGACCGGACCGATCCCC-GACTTACGCATTCTGCCT
423 CGATAGTAGGATCGACAGCACGTAG-GGGGGACAGG-TCGATCCCCAG-CTTGCGCATTCTGCCT
* **
21577341 CTCCAACCGAC
485 TTCC-ACCGGT
* * **
21577352 TGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTAT-TACATGTCTAAGC
1 TGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
* *
21577416 ATACGGAGTTCATTGCCAATCTA
65 ATACGGAGTTCATTCCCAGTCTA
21577439 TGATTTTGAG
Statistics
Matches: 923, Mismatches: 144, Indels: 97
0.79 0.12 0.08
Matches are distributed among these distances:
500 8 0.01
501 433 0.47
502 54 0.06
503 1 0.00
505 2 0.00
507 2 0.00
508 1 0.00
510 2 0.00
511 1 0.00
512 1 0.00
513 1 0.00
514 1 0.00
515 1 0.00
516 1 0.00
517 1 0.00
518 1 0.00
519 2 0.00
521 1 0.00
522 2 0.00
524 2 0.00
526 11 0.01
527 339 0.37
528 55 0.06
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (494 bp):
TGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGGCAGCAGGATCGATAGCA
TGCAGGGGGGACCGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCGACGACTGAGCACCCGCACG
CCAATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAG
GGTTGTGGCAGTGAGACTGACAGCACGCAGAGGGGATAGGTCGATCCCCAGCTTGTGCATTATGC
CTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATT
CCCAGTCTAAGATCAGACCAGACCGAGGGTTACGATAGTAGGATCGACAGCACGTAGGGGGGACA
GGTCGATCCCCAGCTTGCGCATTCTGCCTTTCCACCGGT
Found at i:21576859 original size:158 final size:156
Alignment explanation
Indices: 21576385--21576886 Score: 530
Period size: 158 Copynumber: 3.2 Consensus size: 156
21576375 CCCAGTCTAA
* * * *
21576385 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCAGACCAAGGGTTACGGCAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGTAGGATTGAT
* * * * *
21576449 AGCATGCAGGGGGGACCTGGTCGATTCCCG-GCTTGCGCATTCTGCCTCTACGATCGATTGAGCA
65 AGCACGCAGGGGGGA-CTGGTCGA-TCCCGAGCTTGTGCATTATGCCTCTACGATCGGTTGAGCG
21576513 CCCGCACG-TCTGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTC-GTTTCGT-GGTTGGCTTAG
* ** * **
21576543 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGT-GAGATTGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCAGACCGAGGGTTACGGCAGTAG-GATTGA
* * * * * * *
21576606 TAGCACGCAGAGGGGTACTAGGTCGATCCCTAGCTTGTGCGTTATGCCTCTCCGGTCGGCTCAGC
64 TAGCACGCAG-GGGGGACT-GGTCGATCCCGAGCTTGTGCATTATGCCTCTACGATCGGTTGAGC
*
21576671 GCCCGCACGCTCGTTTCGTGGTTTGACTTAG
127 GCCCGCACGCTCGTTTCGTGG-TTGGCTTAG
* * * *
21576702 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGACCAGACTGAGGGTTACGGTAGTAGGATTGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGTAGGATTGAT
* * * * *
21576766 AGCACGTAGGGGGGACTGGGTCGATCCCGAGCTTGTGCATTTTGCCTCTTCGACCGGTTGAACGC
65 AGCACGCAGGGGGGACT-GGTCGATCCCGAGCTTGTGCATTATGCCTCTACGATCGGTTGAGCGC
*
21576831 CCACACGCTCGTTTCGTAGGTTGGCTTAG
129 CCGCACGCTCGTTTCGT-GGTTGGCTTAG
* *
21576860 GCATAGGGTGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
21576887 CATACGGAGT
Statistics
Matches: 281, Mismatches: 50, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
157 7 0.02
158 153 0.54
159 115 0.41
160 6 0.02
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGTAGGATTGATA
GCACGCAGGGGGGACTGGTCGATCCCGAGCTTGTGCATTATGCCTCTACGATCGGTTGAGCGCCC
GCACGCTCGTTTCGTGGTTGGCTTAG
Found at i:21576898 original size:26 final size:25
Alignment explanation
Indices: 21576860--21576935 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 25
21576850 GTTGGCTTAG
* *
21576860 GCATAGGGTGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
21576886 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
* *
21576912 GCAAACAGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATT-CCAGTCT
21576936 CAGATCGGAT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 42 0.93
27 3 0.07
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:21577072 original size:210 final size:210
Alignment explanation
Indices: 21576710--21577097 Score: 521
Period size: 210 Copynumber: 1.8 Consensus size: 210
21576700 AGGCATACGA
* * * *
21576710 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGTAGGATTGATAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTACGGTAGCAGGATTGATAGCACGCAG
* * * * * * * *
21576775 GGGGGACTGGGTCGATCCCGAGCTTGTGCATTTTGCCTCTTCGACCGGTTGAACGCCCACACGCT
66 GGAGGACCGGCTCGATCCCGAGCTTGCGCATTCTGCCTCTTCGACCGGCTGAACACCCACACGCC
* *
21576840 CGTTTCGTAGGTTGGCTTAGGCATAGGGTGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
131 CATTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
21576905 AGTCTAAGCAAACAG
196 AGTCTAAGCAAACAG
* * * * ** *
21576920 AGTTCATTCCCAGTCTCAGATCGGATCGGACCGAGAGTTGTGGTAGCAGGATTGATAGCATGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTACGGTAGCAGGATTGATAGCACGCAG
* *
21576985 GGAGGACCGGACT-GATCCCCGA-CTTGCGCATTCTGCCTC-TCTGACTGGCTGAGCACCCACAC
66 GGAGGACCGG-CTCGAT-CCCGAGCTTGCGCATTCTGCCTCTTC-GACCGGCTGAACACCCACAC
21577047 GCCCATTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
128 GCCCATTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
21577098 CCCAGTCAGA
Statistics
Matches: 152, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
209 2 0.01
210 144 0.95
211 6 0.04
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.26
Consensus pattern (210 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTACGGTAGCAGGATTGATAGCACGCAG
GGAGGACCGGCTCGATCCCGAGCTTGCGCATTCTGCCTCTTCGACCGGCTGAACACCCACACGCC
CATTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
AGTCTAAGCAAACAG
Found at i:21578138 original size:26 final size:26
Alignment explanation
Indices: 21578109--21578160 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21578099 GTTAACTTAG
*
21578109 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21578135 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21578161 AATCGGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21579192 original size:159 final size:158
Alignment explanation
Indices: 21578807--21579192 Score: 364
Period size: 159 Copynumber: 2.4 Consensus size: 158
21578797 CCCAGTCTAA
* * * *
21578807 GCATACAGAGTTTATTCCTAGTCTAAGATCGAACCGGA-TCGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAAGTCTAAGATCGAACCGGACT-GAGGGTTGTGACAGCAGGATCGAC
* * ** * *
21578871 AGCACACAGGGGGGACTGGGTCAATCCCCGGCTTGCGCATTCTGCTTCTCCGACCGGCTGAGCAC
65 AGCACACAGGGGGAACTGGGCCAATCCCCGGCTTGCGCATGATGCCTCTCCGACCGGCTCAGCAC
** *
21578936 CCGCAGGCCCATTTTATGGGTTGGCTTAG
130 CCGCACACCCATTTCATGGGTTGGCTTAG
* ** * * * * * **
21578965 GCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACTGAGTGTTGTGGCAGCGGGA-CTGGT
1 GCATACGGAGTTCATTCCAAGTCTAAGATCGAACCGGACTGAGGGTTGTGACAGCAGGATC-GAC
* * ** *
21579029 AGCACACTGAGGGGGAAC-GGGCCGATCCCTGGCTTGCGCATGATGCCTCTTTGGCCGGCTCAGC
65 AGCACAC--AGGGGGAACTGGGCCAATCCCCGGCTTGCGCATGATGCCTCTCCGACCGGCTCAGC
* * * * * *
21579093 GCCCGTACACTCGTTTCGTGGGTTGGCTTAT
128 ACCCGCACACCCATTTCATGGGTTGGCTTAG
* * * * *
21579124 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTAAGGGTTGTGACGGCAGGATCAACA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCGAACCGGACTGAGGGTTGTGACAGCAGGATCGACA
21579189 GCAC
66 GCAC
21579193 GTAGGGGGGA
Statistics
Matches: 174, Mismatches: 49, Indels: 9
0.75 0.21 0.04
Matches are distributed among these distances:
157 1 0.01
158 53 0.30
159 111 0.64
160 9 0.05
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAAGTCTAAGATCGAACCGGACTGAGGGTTGTGACAGCAGGATCGACA
GCACACAGGGGGAACTGGGCCAATCCCCGGCTTGCGCATGATGCCTCTCCGACCGGCTCAGCACC
CGCACACCCATTTCATGGGTTGGCTTAG
Found at i:21580008 original size:26 final size:26
Alignment explanation
Indices: 21579972--21580024 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21579962 GTTGACTTAG
21579972 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* **
21579998 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21580024 G
1 G
21580025 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21580871 original size:26 final size:26
Alignment explanation
Indices: 21580842--21580894 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21580832 GTTGACTTAG
*
21580842 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
21580868 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21580894 G
1 G
21580895 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21581200 original size:159 final size:157
Alignment explanation
Indices: 21580868--21581687 Score: 466
Period size: 158 Copynumber: 5.2 Consensus size: 157
21580858 CCCAGTCTAA
* ** * * ** *
21580868 GCATACAGAGTTCATTCCCAGTCTAAG-ATCGGACTGGATCGAGGGTTGTGACAGTAGGATCGGC
1 GCATACGGAGTTCATT-CCAGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGACAACAGGATCGAC
* * ** * * ** * ** * * *
21580932 AGCACGCAG-GGGGGACCGAGTTGAACCTTGGCTTATGCATTCTGCCTCT-TCGACCTGCTGAAT
64 AGCACGCAGAGGGGGACTGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCT-GGTCGGCTCAGT
* * *
21580995 GCCCGTACGCCCATTTTGTGGGTTGGCTTAG
128 GCCCGCACGCTCATTTCGTGGGTT-GCTTAG
* *
21581026 GCATAGGGAGTTCATTCCAGGTCTAAGCCCCAGCTGGACCGAGGGTTGTGACAACGGGATCGACA
1 GCATACGGAGTTCATTCCA-GTCTAAGCCCCAGCTGGACCGAGGGTTGTGACAACAGGATCGACA
21581091 GCACGCAGAGGGGGACTGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGGTCGGCTCAGTGC
65 GCACGCAGAGGGGGACTGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGGTCGGCTCAGTGC
* *
21581156 CCGAACGCTCATTTTGTGGGTTGTCTTAG
130 CCGCACGCTCATTTCGTGGGTTG-CTTAG
* * * * * * **** * * * ** * * * *
21581185 ACATATGGGGCTCATTCCCAATATAAG-ATTTGACCGAACTGAGGGTTACGACGATAGGATTGAT
1 GCATACGGAGTTCATT-CCAGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGACAACAGGATCGAC
* * * * * * * * * * *
21581249 AGCATGTAG-GGGGGA-TCGGGCTGATCCCCGACTTGCGTATTTTGCCTCTCCT-GCCAGTTGAG
64 AGCACGCAGAGGGGGACT-GGGCCGATCCCTGGCTTGCGCATTATGCCTCT-CTGGTCGGCTCAG
* * *
21581311 TACCCCCACGCTCGTTTCGTGGGTTAGCTTAG
127 TGCCCGCACGCTCATTTCGTGGGTT-GCTTAG
* * * * * *
21581343 GCATACAGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAAGGG-TGTGGCAGCAAGACCGG
1 GCATACGGAGTTCATTCCA-GTCTAAGCCCCAGCT-GGACCG-AGGGTTGTGACAACAGGATCGA
* * * * *
21581406 CAGCACGCAGAGGGGGACTGGGCCGATCCCTGGCTTGCACATTATGCCTCTCCGATCGTCTCAAT
63 CAGCACGCAGAGGGGGACTGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGGTCGGCTCAGT
21581471 GCCCGCACGCTCATTTCGTGGGTTGACTTAG
128 GCCCGCACGCTCATTTCGTGGGTTG-CTTAG
** * * *
21581502 GCATACGGAGTTCATTCACAGTCTAAG-ATCAGACCGGTCTGAGGG-T-T-ACAGTAGCAGGATC
1 GCATACGGAGTTCATTC-CAGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGACA--A-CAGGATC
* * ** * * * * * ** * * *
21581563 GACAGCACGCA-AGGTGGA-TCGAGTTGATCCCCGGCTTGCACATTCTACCTTTCCCGTCAGTTG
61 GACAGCACGCAGAGGGGGACT-GGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGGTCGGCTC
* *
21581626 AGCT-CCCGTACGCTCATTTCGGGGGTTGGCTTAG
125 AG-TGCCCGCACGCTCATTTCGTGGGTT-GCTTAG
21581660 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCA-GTCTAAGC
21581688 ATACGGAGTT
Statistics
Matches: 499, Mismatches: 134, Indels: 57
0.72 0.19 0.08
Matches are distributed among these distances:
156 2 0.00
157 11 0.02
158 253 0.51
159 226 0.45
160 7 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGCCCCAGCTGGACCGAGGGTTGTGACAACAGGATCGACAG
CACGCAGAGGGGGACTGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGGTCGGCTCAGTGCC
CGCACGCTCATTTCGTGGGTTGCTTAG
Found at i:21581454 original size:317 final size:317
Alignment explanation
Indices: 21581001--21581687 Score: 826
Period size: 317 Copynumber: 2.2 Consensus size: 317
21580991 GAATGCCCGT
* * * *
21581001 ACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAGGTCTAAGCCCCAGCTGGACC
1 ACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACC
** * *
21581066 GAGGGTTGTGACAACGGGATCGACAGCACGCAGAGGGGGACTGGGCCGATCCCTGGCTTGCGCAT
66 GAGGGTTGTGACAACAAGACCGACAGCACGCAGAGGGGGACTGGGCCGATCCCTGGCTTGCACAT
* * * * * * *
21581131 TATGCCTCTCTGGTCGGCTCAGTGCCCGAACGCTCATTTTGTGGGTTGTCTTAGACATATGGGGC
131 TATGCCTCTCCGATCGGCTCAATGCCCGAACGCTCATTTCGTGGGTTGACTTAGACATACGGAGC
* ** * * * * * *
21581196 TCATTCCCAATATAAGATTTGACCGAACTGAGGGTTAC-G-ACGATAGGATTGATAGCATGTAGG
196 TCATTCACAATATAAGATCAGACCGAACTGAGGGTTACAGTA-G-CAGGATCGACAGCACGCAAG
* ** * * *
21581259 GGGGATCGGGCTGATCCCCGACTTGCGTATTTTGCCTCTCCTGCCAGTTGAG-TACCCCC
259 GGGGATCGAGCTGATCCCCGACTTGCACATTCTACCTCTCCCGCCAGTTGAGCT-CCCCC
* * *
21581318 ACGCTCGTTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAG-TCGGAC
1 ACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCT-GGAC
* * *
21581382 CGAAGGG-TGTGGCAGCAAGACCGGCAGCACGCAGAGGGGGACTGGGCCGATCCCTGGCTTGCAC
65 CG-AGGGTTGTGACAACAAGACCGACAGCACGCAGAGGGGGACTGGGCCGATCCCTGGCTTGCAC
* * *
21581446 ATTATGCCTCTCCGATCGTCTCAATGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
129 ATTATGCCTCTCCGATCGGCTCAATGCCCGAACGCTCATTTCGTGGGTTGACTTAGACATACGGA
* * * **
21581511 GTTCATTCACAGTCTAAGATCAGACCGGTCTGAGGGTTACAGTAGCAGGATCGACAGCACGCAAG
194 GCTCATTCACAATATAAGATCAGACCGAACTGAGGGTTACAGTAGCAGGATCGACAGCACGCAAG
* * * * * **
21581576 GTGGATCGAGTTGATCCCCGGCTTGCACATTCTACCTTTCCCGTCAGTTGAGCTCCCGT
259 GGGGATCGAGCTGATCCCCGACTTGCACATTCTACCTCTCCCGCCAGTTGAGCTCCCCC
*
21581635 ACGCTCATTTCGGGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 ACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
21581688 ATACGGAGTT
Statistics
Matches: 310, Mismatches: 55, Indels: 10
0.83 0.15 0.03
Matches are distributed among these distances:
316 1 0.00
317 301 0.97
318 7 0.02
319 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (317 bp):
ACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACC
GAGGGTTGTGACAACAAGACCGACAGCACGCAGAGGGGGACTGGGCCGATCCCTGGCTTGCACAT
TATGCCTCTCCGATCGGCTCAATGCCCGAACGCTCATTTCGTGGGTTGACTTAGACATACGGAGC
TCATTCACAATATAAGATCAGACCGAACTGAGGGTTACAGTAGCAGGATCGACAGCACGCAAGGG
GGATCGAGCTGATCCCCGACTTGCACATTCTACCTCTCCCGCCAGTTGAGCTCCCCC
Found at i:21581844 original size:184 final size:183
Alignment explanation
Indices: 21581502--21583071 Score: 1309
Period size: 184 Copynumber: 8.3 Consensus size: 183
21581492 GTTGACTTAG
* * * * *
21581502 GCATACGGAGTTCATTCACAGTCTAAGATCAGACCGGTCTGAGGGTTACAGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * * * * * *
21581567 GCACGCAAGGTGGATCGAGTTGATCCCCGGCTTGCACATTCTACCTTTCCCGTCAGTTGAGCTCC
66 GCACGC-AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTCCGGTCGGCTGAGCGCC
* * *
21581632 CGTACGCTCATTTCGGGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
** *
21581686 GCATACGGAGTTCATTCGTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
**** * *
21581751 GCACGCAGGGTGGACCACACCGATCCCCGGCTTGCGCATTCTGTCTTTTCGGTCGGCTGAGCGCC
66 GCACGCAGGG-GGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTCCGGTCGGCTGAGCGCC
* * * *
21581816 CGCACACTCGTTTCGTGGGTTTGCTTAGGCATACGAAGTTCATTTCATGTCTAA
130 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * **
21581870 GCATACGGAGTTCATTCCTAGTCTAAGATCAAACCAAACCGAGGGTTGCGGCAGTAGGGCCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-G--GT---------A
* * * * * * * *
21581935 GCAGGATCGGCAGTACGCAAGGAGGGACTGGGCCGATCCCTGGCTTGCGTATTCTACCTCTCCGG
54 GCAGGATCGACAGCACGC-AGG-GGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCT-TTC--
* *
21582000 TCGGCCTCTCTGGCCTGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
114 -CGG----TC--G---GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
* *
21582065 TCATACCCA-ATCTAA
169 TCAT-TCCATGTCTAA
* * * ** *
21582080 GCATACAGAGTTCATTCCCAGTCTAACATCGGACCGGACCGAGGGTTGCGACAGCAGGACCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * * * * * ** *
21582145 ACACGCAAGGGGAATCGGGTCGGTCCCCGACTTACGTATTCTGCCTCTCCGGCCTACTGAACGCC
66 GCACGC-AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTCCGGTCGGCTGAGCGCC
* *
21582210 CGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
130 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * * *
21582264 GCCTATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * * * *
21582329 GCACGCAGGGTGGACCAGGTCAAACCCAGGCTTACGCATTCTACCTTTCCCGTTGGCTGAGCGCC
66 GCACGCAGGG-GGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTCCGGTCGGCTGAGCGCC
* * * *
21582394 CGCACTCTCATTT-TTGGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
130 CGCACGCTCGTTTCGT-GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
21582448 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGTAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * *
21582513 GCACGTAGGGTGGACCGGGTCGATCCTCAGCTTAG-GCATTCTGCCTCTCCGATCGGATGAGCGC
66 GCACGCAGGG-GGACCGGGTCGATCCCCGGCTT-GCGCATTCTGCCTTTCCGGTCGGCTGAGCGC
* * * * * * *
21582577 CCGTACGCTAGTTTCATAGGTTTGCTTAGGCACACAGAGTTCATTCCATGTCTAA
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * * * * *
21582632 GCATACGGAGTTCATTCCTAGTCTAAGATCAAATCGGACCGAGGGTTGCGGCAGTAGTA-CCAGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGA-C
* * * * * *
21582696 AGCACACAAGGAGGGATCGGGCCGATCCCTGGCTTGCGTATTCTGCCTCTCCGATCGACCTCTCC
65 AGCACGC-AGG-GGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTCCG---G-----T--
* * * * *
21582761 AGCTGGCTAAGAGCCCTCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-G
118 --C-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATG
21582825 TCTAA
179 TCTAA
* * * *
21582830 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCC-GACTGAGGGATGC-GCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * ** ** **
21582893 AGCACGCAGGAGGGATCGGGTCGGTCCCCGACTTGCGCATTCTGCCTCTCCGACCAACTGAGCTT
65 AGCACGCAGG-GGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTCCGGTCGGCTGAGCGC
** * *
21582958 CCGCACATTCGTTTCATGGGTTGGCTTTGGCATACGGAGTTCATTCCATGTCTAA
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
21583013 GCCTACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGTAGCAGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGA
21583072 CCAGCAGCAA
Statistics
Matches: 1109, Mismatches: 220, Indels: 114
0.77 0.15 0.08
Matches are distributed among these distances:
182 5 0.00
183 100 0.09
184 609 0.55
185 37 0.03
186 1 0.00
187 2 0.00
189 1 0.00
193 4 0.00
196 57 0.05
197 71 0.06
198 114 0.10
199 4 0.00
201 3 0.00
205 2 0.00
207 1 0.00
209 1 0.00
210 95 0.09
211 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTCCGGTCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:21581893 original size:26 final size:26
Alignment explanation
Indices: 21581844--21581896 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21581834 GTTTGCTTAG
*
21581844 GCATACGAAGTTCATTTCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
*
21581870 GCATACGGAGTTCATTCC-TAGTCTAA
1 GCATACGAAGTTCATTCCAT-GTCTAA
21581896 G
1 G
21581897 ATCAAACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:21582083 original size:26 final size:26
Alignment explanation
Indices: 21582054--21582112 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
21582044 GTTGACTTAG
21582054 GCATACGGAGTTCATACCCAATCTAA
1 GCATACGGAGTTCATACCCAATCTAA
* * *
21582080 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAATCTAA
21582106 -CAT-CGGA
1 GCATACGGA
21582113 CCGGACCGAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 23 0.79
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAATCTAA
Found at i:21582458 original size:26 final size:26
Alignment explanation
Indices: 21582422--21582474 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21582412 GTTGGCTTAG
21582422 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
21582448 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21582474 G
1 G
21582475 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21582840 original size:26 final size:26
Alignment explanation
Indices: 21582804--21582856 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21582794 GTTGACTTAG
21582804 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21582830 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21582856 G
1 G
21582857 ATCAGATCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21583020 original size:26 final size:26
Alignment explanation
Indices: 21582990--21583039 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
21582980 GGCTTTGGCA
21582990 TACGGAGTTCATT-CCATGTCTAAGCC
1 TACGGAGTTCATTCCCA-GTCTAAGCC
21583016 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
21583040 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCC
Found at i:21583225 original size:26 final size:26
Alignment explanation
Indices: 21583196--21583248 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21583186 GTTGACTTAG
21583196 GCATACAGAGTTCATCCCTAATCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
* * * *
21583222 GCATACGGAGTTCGTTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
21583248 G
1 G
21583249 ATCGAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:21584213 original size:26 final size:26
Alignment explanation
Indices: 21584177--21584227 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
21584167 GTTCACTTAG
21584177 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21584203 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
21584228 TGATCGGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21584704 original size:26 final size:26
Alignment explanation
Indices: 21584668--21584718 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
21584658 ATTGGCTTAG
*
21584668 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21584694 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
21584719 TGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21584908 original size:26 final size:26
Alignment explanation
Indices: 21584878--21584927 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
21584868 TGACTTAGGC
*
21584878 ATACGGAGTTCA-TCCTCAGTCTAAGT
1 ATACGAAGTTCATTCC-CAGTCTAAGT
21584904 ATACGAAGTTCATTCCCAGTCTAA
1 ATACGAAGTTCATTCCCAGTCTAA
21584928 TGTCGAACCG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGT
Found at i:21585215 original size:26 final size:26
Alignment explanation
Indices: 21585186--21585238 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21585176 GTTGGCTTAG
*
21585186 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
21585212 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21585238 G
1 G
21585239 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21585935 original size:26 final size:26
Alignment explanation
Indices: 21585905--21585955 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
21585895 TTGACTTAGG
21585905 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
*
21585931 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
21585956 GATCGGATCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:21586776 original size:158 final size:159
Alignment explanation
Indices: 21586416--21586777 Score: 383
Period size: 159 Copynumber: 2.3 Consensus size: 159
21586406 CTCTACGGAT
* * * **
21586416 GGCTGAGCGCCCGCACACCCGTTTGGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * * * * * *
21586481 GCCCCAAACGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGACTGATC
66 GACCCAAACGGACCGAGGGTTATGGCAGCAGGACCGACAACACGCAGAGGAGGACAAGACCGATC
* * *
21586546 CTCGACTTGTGCATTATGCCTCTTCGATC
131 CCCGACTTGTGCATTATGCCTCTCCGACC
* * * * * * *
21586575 GGCTCAGCGCCCGAATGCTTGTTTCGTGGGTTGACTTCA-GCATACAGAGTTTATTCCCA-GTTT
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT-AGGCATACAGAGTTCATT-CCATGTCT
* * * * *
21586638 AAGATCGAATCGGATCGAGGGTTATGGCAGCAGGATCGACAACACGCA-AGGAGGACTAAG-CCG
64 AAGACCCAAACGGACCGAGGGTTATGGCAGCAGGACCGACAACACGCAGAGGAGGAC-AAGACCG
* * *
21586701 GTCCCCGGCTTGTGCATTTTGCCTCTCC-AGCC
128 ATCCCCGACTTGTGCATTATGCCTCTCCGA-CC
21586733 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
21586778 GAGCTCAACC
Statistics
Matches: 163, Mismatches: 35, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 71 0.44
159 86 0.53
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
GACCCAAACGGACCGAGGGTTATGGCAGCAGGACCGACAACACGCAGAGGAGGACAAGACCGATC
CCCGACTTGTGCATTATGCCTCTCCGACC
Found at i:21587271 original size:26 final size:26
Alignment explanation
Indices: 21587221--21587272 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21587211 GTTGGCTTAG
* *
21587221 GCATACGGAGTTCATTTCATTTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
21587247 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
21587273 CATTGGACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:21587638 original size:26 final size:26
Alignment explanation
Indices: 21587601--21587653 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21587591 GTTGACTTAG
21587601 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
21587627 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
21587653 G
1 G
21587654 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:21588153 original size:26 final size:26
Alignment explanation
Indices: 21588103--21588155 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21588093 GTTGGCTTAG
* **
21588103 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCAAATCTAA
21588129 GCATACAGAGTTCATTCCAAATCTAA
1 GCATACAGAGTTCATTCCAAATCTAA
21588155 G
1 G
21588156 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAATCTAA
Found at i:21588342 original size:26 final size:26
Alignment explanation
Indices: 21588312--21588364 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21588302 GTTGACTTAG
21588312 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
21588338 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21588364 G
1 G
21588365 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21588691 original size:26 final size:25
Alignment explanation
Indices: 21588655--21588706 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
21588645 GTTGGCATAG
*
21588655 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCA-GTCTAA
21588681 GCATACGGAGTTCATCCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
21588706 G
1 G
21588707 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:21589152 original size:26 final size:26
Alignment explanation
Indices: 21589122--21589174 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21589112 GTTGACTTAG
*
21589122 GCATATGAAATTCATCCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
* * *
21589148 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
21589174 G
1 G
21589175 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAGTCTAA
Found at i:21589534 original size:159 final size:159
Alignment explanation
Indices: 21589148--21589545 Score: 423
Period size: 159 Copynumber: 2.5 Consensus size: 159
21589138 CCCAGTCTAA
** * *
21589148 GCATACGAAGTTCATTCCTAGTCTAAGATTGGATCGGACTGAGGGTTGCGGCAGCAGGATCGATA
1 GCATACGGGGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTGCGGCAGTAGGATCGATA
* * * * *
21589213 GCACGCAATGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCTGCTTGAGTGC
66 GCACGCAAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCAGCCGGCTTCAGCGC
*
21589278 CCGCACGTCCATTTTGTGGGTTGGCTTAG
131 CCGCACGTCCATTTTGTGGGTTGACTTAG
* * ** * * *
21589307 GCATA-GGGAGTTCATTCCTTGTCTAAG-CCCCAGTCGGACTGAGGGTTGTGGCAGTGGGACCGA
1 GCATACGGG-GTTCATTCCTAGTCTAAGATCGGA-TCGGACTGAGGGTTGCGGCAGTAGGATCGA
* * ** *
21589370 CAGCACGCATAGGGGGA-CTGGGCCGATCCCCGGCTTGCGCATTATGCCAT-TCTGGTCGGC-TC
64 TAGCACGCA-AGGGGGATC-GGGCCGATCCCCGACTTGCGCATTATGCC-TCTCCAGCCGGCTTC
*
21589432 AGCGCCCGCACG-CTCGTTTTGTGGGTTGACTTAG
126 AGCGCCCGCACGTC-CATTTTGTGGGTTGACTTAG
* ** **
21589466 GCATACGGGGTTCATTCCCAGTCTAAGATCGGATCGGA-TCGAGGGTCACGATAGTAGGATCGAT
1 GCATACGGGGTTCATTCCTAGTCTAAGATCGGATCGGACT-GAGGGTTGCGGCAGTAGGATCGAT
*
21589530 AGCACGCAGGGGGGAT
65 AGCACGCAAGGGGGAT
21589546 GAAAAGGTCC
Statistics
Matches: 192, Mismatches: 37, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
158 10 0.05
159 137 0.71
160 44 0.23
161 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.24
Consensus pattern (159 bp):
GCATACGGGGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTGCGGCAGTAGGATCGATA
GCACGCAAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCAGCCGGCTTCAGCGC
CCGCACGTCCATTTTGTGGGTTGACTTAG
Found at i:21589672 original size:26 final size:26
Alignment explanation
Indices: 21589623--21589675 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21589613 GTTGACTTAG
* **
21589623 GCATACGGAGTTCATTTCGTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21589649 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21589675 G
1 G
21589676 ATAAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21589974 original size:13 final size:13
Alignment explanation
Indices: 21589939--21589974 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
21589929 TACGCATTAT
*
21589939 GCCTCTCCGATCG
1 GCCTCTCCGGTCG
21589952 GCCTCTCCGGTCG
1 GCCTCTCCGGTCG
21589965 GCCTCTCCGG
1 GCCTCTCCGG
21589975 CTGGCTGAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.03, C:0.47, G:0.28, T:0.22
Consensus pattern (13 bp):
GCCTCTCCGGTCG
Found at i:21590496 original size:158 final size:159
Alignment explanation
Indices: 21590126--21590544 Score: 423
Period size: 158 Copynumber: 2.6 Consensus size: 159
21590116 TGGGACCCGA
* * * ** * * *
21590126 CCGATCCTCGACTTACGCATTCTTCCTCTCCGACCGGCTGAATGCCCGCACGCCCGTTTTATGGG
1 CCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCACACGCTCGTTTCATGGG
* * * ** * *
21590191 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCTGGACCGATGGTTGTGGCAGCG
66 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAGCTAGACCGAGGGTTACGGCAACA
*
21590256 GGACCAGCAGCACGCAGAGTGGGATCGGG
131 GGACCAGCAGCACGCAGAGGGGGATCGGG
* * * * * * * * *
21590285 CCGATCCCTGGCTTGCGCATTATGCCTTTTCGATCAGCTTAGCGCCCGA-ACGCTCGTTTCGTGG
1 CCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC-ACACGCTCGTTTCATGG
* * *** * *
21590349 GCTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGCTGGATC-AGACCGAGGGTTACGGTAA
65 GTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCAAGCTAGACCGAGGGTTACGGCAA
* * *
21590412 CAGGATC-GACAGCATGCAGGGGGGGATCGGG
129 CAGGACCAG-CAGCACGCAGAGGGGGATCGGG
* * *
21590443 CCGGTCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCACACGCTCATTTCATGGG
1 CCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCACACGCTCGTTTCATGGG
* *
21590508 TTGGCTTAGGCATACGGAGTTTATTCCATGTGTAAGC
66 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
21590545 ATACAGAGTT
Statistics
Matches: 204, Mismatches: 51, Indels: 11
0.77 0.19 0.04
Matches are distributed among these distances:
157 2 0.01
158 120 0.59
159 82 0.40
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
CCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCACACGCTCGTTTCATGGG
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAGCTAGACCGAGGGTTACGGCAACA
GGACCAGCAGCACGCAGAGGGGGATCGGG
Found at i:21590569 original size:26 final size:26
Alignment explanation
Indices: 21590517--21590569 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21590507 GTTGGCTTAG
* * *
21590517 GCATACGGAGTTTATTCCATGTGTAA
1 GCATACAGAGTTCATTCCATGTCTAA
21590543 GCATACAGAGTTCATTCC-TAGTCTAA
1 GCATACAGAGTTCATTCCAT-GTCTAA
21590569 G
1 G
21590570 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:21590750 original size:26 final size:27
Alignment explanation
Indices: 21590714--21590767 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
21590704 GTTGACTTAG
*
21590714 GCATATGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCCAGTCTAA
21590740 GCATACGGAGTTCATTCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCCAGTCTAA
21590767 G
1 G
21590768 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (27 bp):
GCATACGGAGTTCATTCCCCAGTCTAA
Found at i:21591071 original size:699 final size:699
Alignment explanation
Indices: 21589990--21591978 Score: 2151
Period size: 699 Copynumber: 2.8 Consensus size: 699
21589980 TGAGCCCCCG
* * *
21589990 CACGCTTGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATATGGAGTTC
1 CACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
** * * * * * * *
21590055 ATTCCCAGTCTAAGATTAGACCGTACCGAAGGTTGCGATAGCAGGATCGACAGCATGTAAGTGGG
66 ATTCCCAGTCTAAGATCGGACCGAACC-AAGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGGG
* * * * *
21590120 ACCCGACCGAT-CCTCGACTTACGCATTCTTCCTCTCCGACCGGCTGAATGCCCGCACGCCCGTT
130 ACCAGGCCGATCCCT-GACTTACGCATTCTGCCTCTCTGACTGGCTGAATGCCCGCACG-CCGTT
** ** * *
21590184 TTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCAAGCTGGACCGATGGTTG
193 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA-CCAGACTGAGGGTTG
*
21590248 TGGCAGCGGGACCAGCAGCACGCAGAGTGGGATCGGGCCGATCC-CTGGCTTGCGCATTATGCCT
257 TGGCAGCGGGACCAGCAGCACGCAGAGGGGGATCGGGCCGATCCTC-GGCTTGCGCATTATGCCT
* * *
21590312 TTTCGATCAGCTTAGCGCCCGAACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCC
321 TTTCGGTCGGCTCAGCGCCC-AACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCC
* * * *
21590377 TAGTCTAAGCT-GGATCAGACCGAGGGTTACGGTAACAGGATCGACAGCATGCAGGGGGGGATCG
385 TAGTCTAAGATCGGATCAGACAGAGGGTTACGGTAGCAGGATCGACAGCACGCA-GGGGGGATCG
* * *
21590441 GGCCGGTCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCACACGCTCATTTCATG
449 GGCCGGTCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCATG
* * *
21590506 GGTTGGCTTAGGCATACGGAGTTTATTCCATGTGTAAGCATAC-AGAGTTCATTCCTAGTCTAAG
514 GGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGA-AGTTCATTCC-AGTCTAAG
**
21590570 ATCAGACCGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCAAGATCGATAGCACGTAAGGGGGGA
577 ATCAGACCGGACCGAGGGTTACGGCAGCAGGACCAGCAGCAAGATCGATAGCAC-TAAGGGGGGA
* * * * *
21590635 TCGGGGGGATCCTCGGCTTGTAG-ATGCTGCCTCTCCGATCGAC-T-GA-G-CA-T-CTA
641 TCAGGGCGAGCCTCGACTTAT-GCATGCTGCCTCTCCGATCGACTTCGACGTCAGTCCTA
* * *
21590688 TACGCTTGTTTCTTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
1 CACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* * *
21590753 ATTCCCCAGTCTAAGATCGGACCGGACCAATGGTTATGGCAGCAGGATCGACAGCACGCAGGGGG
66 ATT-CCCAGTCTAAGATCGGACCGAACCAA-GGTTGTGGTAGCAGGATCGACAGCACGCAGGGGG
* * * * * ***
21590818 GACAAGGCCGATCCCT-AGTTTATGCATTCTGCCTCTCTGGCTGGTTGAGCACCCGCACGACCGT
129 GACCAGGCCGATCCCTGA-CTTACGCATTCTGCCTCTCTGACTGGCTGAATGCCCGCACG-CCGT
* *
21590882 TACGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAACCAGACTGAGGGTTG
192 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACTGAGGGTTG
* * * * * ** *
21590947 TGACAGCGGGACCAGTAGCACGCAGAGGGGGATCGAGTCGATCCTCGACTTGCGCATTATAACTC
257 TGGCAGCGGGACCAGCAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTT
* * * * *
21591012 TCCGGTCGGGTCAACGCCCATACGCTCATTT-GATGGGCTGACTTAGGCATACAGAGTTCATTCC
322 TTCGGTCGGCTCAGCGCCCA-ACGCTCGTTTCG-TGGGCTGACTTAGGCATACGGAGTTCATTCC
* * * * * *
21591076 TAGTCTAAGATCGGACCAGACAGAGGGTTGCGGCAGCAAGATCGACAGCACGGAGGGGGGATCGA
385 TAGTCTAAGATCGGATCAGACAGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGATCGG
** * * * * * * *
21591141 GCCGGTCCCC-AGCTTATGCATTCTGCCTCTTCGGTCGACGGAGCACCCGTACGCTCGTTCCGTG
450 GCCGGTCCCCGA-CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCATG
* ** *
21591205 GATTGGCTTAGGCATACGAAGTTCATTCCACATCTAAGCATACGAAGTTCATTCCCAGTTTAAGA
514 GGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATT-CCAGTCTAAGA
* * * *
21591270 TCGGATCGGACTGAGGGTTACGGCAGCAGGACCAGCAGCAAGATCGATAGCACTCAGGGGGGATC
578 TCAGACCGGACCGAGGGTTACGGCAGCAGGACCAGCAGCAAGATCGATAGCACTAAGGGGGGATC
* ** * ** * *
21591335 AGGTCGAGCCTCGACTTATGCATTTTGCCTTTTTGATCGGCTTTTTCGACCGGTTGAGTGCCTA
643 AGGGCGAGCCTCGACTTATGCATGCTGCCTCTCCGATCGAC---TTCGA-C-G-TCAGT-CCTA
* * * *
21591399 CACG-TTCGATTCATGGGTTGACTTAGGCTTACGGAGTTCATCCCCAGTCTAAGCATACAGACTT
1 CACGCTT-GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
* * * * * * **
21591463 CGTTCCCACTCCAAGATCGGATCGAACCGAGGGTTGTGGTAGCAAGATCCCCAGCACGCAGGGGG
65 CATTCCCAGTCTAAGATCGGACCGAACC-AAGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGG
* * * * * * * * * *
21591528 GACCGGGTCGGTCCCTGACTTGCGCATTCTGCCTCTCTAACTGACTCAATGCTCGTACGCTCATT
129 GACCAGGCCGATCCCTGACTTACGCATTCTGCCTCTCTGACTGGCTGAATGCCCGCACGC-CGTT
* * * *
21591593 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA-CTGAACTAAGGGCTA
193 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAG-ACTGAGGGTTG
* * * *
21591657 TGGCAGTGGGACCAGCAGCACGCAGAGGAGGACCGGGCCGATCCTCGGCTTGTGCATTATGCCTT
257 TGGCAGCGGGACCAGCAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTT
* * * * * * *
21591722 TTCGGTTGGCTCAGCACCCGCACGCTTGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCC
322 TTCGGTCGGCTCAGCGCCC-AACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCT
* * * * * * *
21591787 AGTCTAAGATCAGATCGGACTGAGGGTTACGATAGCAGGATTGACAGCACGCAGAGGGGACTAGG
386 AGTCTAAGATCGGATCAGACAGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGA-TCGG
* * * * * * * *
21591852 G-TGATCCCTGGCTTGCGCATTTTGCCTCTCCGGCTGGCTGAGCACCCGCACACTTGTTTCATGG
450 GCCGGTCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCATGG
21591916 GTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCATGTCTAAG
515 GTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCA-GTCTAAG
21591979 CATACGAAGT
Statistics
Matches: 1051, Mismatches: 204, Indels: 60
0.80 0.16 0.05
Matches are distributed among these distances:
697 1 0.00
698 106 0.10
699 419 0.40
700 46 0.04
702 1 0.00
703 2 0.00
706 1 0.00
708 1 0.00
709 7 0.01
710 401 0.38
711 66 0.06
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (699 bp):
CACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCGGACCGAACCAAGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGGGA
CCAGGCCGATCCCTGACTTACGCATTCTGCCTCTCTGACTGGCTGAATGCCCGCACGCCGTTTCG
TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACTGAGGGTTGTGGC
AGCGGGACCAGCAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTTTTCG
GTCGGCTCAGCGCCCAACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCTAGTCT
AAGATCGGATCAGACAGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGGT
CCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGC
TTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCAGTCTAAGATCAGACCG
GACCGAGGGTTACGGCAGCAGGACCAGCAGCAAGATCGATAGCACTAAGGGGGGATCAGGGCGAG
CCTCGACTTATGCATGCTGCCTCTCCGATCGACTTCGACGTCAGTCCTA
Found at i:21591956 original size:26 final size:26
Alignment explanation
Indices: 21591926--21592004 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
21591916 GTTGGCTTAG
21591926 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
21591952 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
*
21591978 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
21592004 G
1 G
21592005 ATTTTGAGCC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:21593183 original size:26 final size:26
Alignment explanation
Indices: 21593147--21593199 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21593137 GTTGGCGTAG
21593147 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
21593173 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
21593199 G
1 G
21593200 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:21593771 original size:26 final size:26
Alignment explanation
Indices: 21593721--21593773 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21593711 GTTGGTTTAG
* *
21593721 GCATACGGAGTTCATTCCATGTCTAA
1 GCATAAGGAGTTCATTCCATATCTAA
21593747 GCATAAGGAGTTCATTCCCA-ATCTAA
1 GCATAAGGAGTTCATT-CCATATCTAA
21593773 G
1 G
21593774 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCATATCTAA
Found at i:21600325 original size:26 final size:26
Alignment explanation
Indices: 21600289--21600341 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21600279 GTTGACTTAG
21600289 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21600315 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21600341 G
1 G
21600342 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21600674 original size:26 final size:26
Alignment explanation
Indices: 21600644--21600696 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21600634 GTTGACGTAG
21600644 GCATACAAAGTTCATCCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
** * *
21600670 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
21600696 G
1 G
21600697 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:21601296 original size:183 final size:184
Alignment explanation
Indices: 21600987--21601346 Score: 420
Period size: 183 Copynumber: 2.0 Consensus size: 184
21600977 GTTGACTTAG
* * * * *
21600987 ACATACGAAGATCATTCCCAGCCTAAGATCAGACCAGACCTAGGGTTGTGACACTAGGATCGACA
1 ACATACGAAGATCATTCCCAGCCAAAGATCAGACCAGACCGAAGGTTGCGAAACTAGGATCGACA
* * ** * *
21601052 GTACGCAGGGGGGACCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCC
66 GCACGCAGGGGGGACCGAGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCAACCGACTGAGCACC
* * **
21601117 CTCACG-TTCGTTTTATAGGTTGGCTTAGGCATACGGAGTTCATTCCACAACTAA
131 CGCACGCTT-GTTTCATAGGTTGGCTTAGGCATACAAAGTTCATTCCACAACTAA
* * * * *
21601171 ACATACGAAGTTCATTCTCAGTCAAAGATCAGATCGGACCGAAGGTTGCGAAAGC-AGGATCGAC
1 ACATACGAAGATCATTCCCAGCCAAAGATCAGACCAGACCGAAGGTTGCGAAA-CTAGGATCGAC
* * * * *
21601235 AGCATGTA-GGGGGATCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCTAACCGACTGAGCAC
65 AGCACGCAGGGGGGACCGAGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCAACCGACTGAGCAC
* * * *
21601299 CGGCACGCTTGTTTCGTGGGTTGGTTTAGGCATACAAAGTTCATTCCA
130 CCGCACGCTTGTTTCATAGGTTGGCTTAGGCATACAAAGTTCATTCCA
21601347 TGTCTAAGCC
Statistics
Matches: 145, Mismatches: 29, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
183 85 0.59
184 59 0.41
185 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (184 bp):
ACATACGAAGATCATTCCCAGCCAAAGATCAGACCAGACCGAAGGTTGCGAAACTAGGATCGACA
GCACGCAGGGGGGACCGAGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCAACCGACTGAGCACC
CGCACGCTTGTTTCATAGGTTGGCTTAGGCATACAAAGTTCATTCCACAACTAA
Found at i:21601529 original size:26 final size:26
Alignment explanation
Indices: 21601499--21601551 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21601489 GTTGACTTAG
21601499 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21601525 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21601551 G
1 G
21601552 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21601709 original size:354 final size:342
Alignment explanation
Indices: 21601134--21602210 Score: 877
Period size: 343 Copynumber: 3.1 Consensus size: 342
21601124 TCGTTTTATA
* * * * * * *
21601134 GGTTGGCTTAGGCATACGGAGTTCATTCCACA-ACTAAACATACGAAGTTCATTCTCAGTCAAAG
1 GGTTGACTTAGGCATACGGAGTTCA-TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * * * * * *
21601198 ATCAGATCGGACCGAAGGTTGCGAAAGCAGGATC-GACAGCATGTAG-GGGGA-TCGAGCCGATC
65 ATCGGACCAGACCGAGGGTTACGACAGCAAGATCAG-CAGCAAGCAGAGGGGACACG-GACGATC
* ** * * * * * * * * *** *
21601260 CCCAGCTTGCGCATTCTGCCTCTCTAACCGACTGAGCACCGGCACGCTTGTTTCGTGGGTTGGTT
128 CCCGGCTTATGCATTCTACCCCTCCAACTGGCTGAGCACCTGTACACCCATTTCGTGGGTTGGCT
* * *
21601325 TAGGCATACA-AAGTTCATTCCATGTCTAAGCCGCAGTCGGACCGAGGATTATGGTAGCAAGACC
193 TAGGCATA-AGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG---AT-GT-G---G--C
* * * *
21601389 GGTAGCGGGATCGACAGCACACAAAGGGGGACTGTACTGATCCCCGGCTTACGTATTATGCCTCT
247 ---AGCGGGACCGACAGCACACAAAGGGGGACCGGACTGATCCCCGGCTTACGCATTATGCCTCT
* * *
21601454 CCGGTTGGCTGAG-CACCCGTAAGCTCATTTCATG
309 CCGGCTGGCTCAGTCA-CCGCAAGCTCATTTCATG
21601488 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
21601553 TCGGATCGGACCGAGGGTTACGACAGCAAGATCAGCAGCACA-CA-AGGGGAC-CGGACAGGTCC
66 TCGGACCAGACCGAGGGTTACGACAGCAAGATCAGCAGCA-AGCAGAGGGGACACGGAC-GATCC
* **
21601615 CCAGG-TTATGCATTCTACCTCTCC-GGTCGGCTGAGCACCTGTACACCCATTTCGTGGGTTGGC
129 CC-GGCTTATGCATTCTACCCCTCCAACT-GGCTGAGCACCTGTACACCCATTTCGTGGGTTGGC
21601678 TTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGATGTGGCAGCGGGACC
192 TTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCG-AGGATGTGGCAGCGGGACC
** * * * * ** *
21601743 GACAGCACGTAGAGGGGGACCGGGCTGATCTCTGGCTTGTGCATTATGCCTCTTCGGCTGGCTCA
256 GACAGCACACAAAGGGGGACCGGACTGATCCCCGGCTTACGCATTATGCCTCTCCGGCTGGCTCA
* * * * *
21601808 GTGATCGCATGCTCGTTTCGTG
321 GTCACCGCAAGCTCATTTCATG
* * * * *
21601830 GGTTGACTTATGCGTACGGAGTTCATCCCTATTGTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * * * * *
21601895 TTGGACCAGACTGAGGGTTGCGTCAGTAGGATCGGCAGCAAGCAGGGGGGACAGGGTCGATCCCC
66 TCGGACCAGACCGAGGGTTACGACAGCAAGATCAGCAGCAAGCAGAGGGGACACGGACGATCCCC
* * **
21601960 GGCTTGTGCATTCTACCCCTCCAACTGGCTGAGCACCTGTACACCCGTTTCGTGCATTGGCTTAG
131 GGCTTATGCATTCTACCCCTCCAACTGGCTGAGCACCTGTACACCCATTTCGTGGGTTGGCTTAG
* * *
21602025 G-ACTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGAC
196 GCA-TAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGA-GGATGTGGCAGCGGGACCGAC
* * * * * ** * * ** *
21602089 AGTACACAGAGGGGGACCGGGCCGATCCTCGGCTTGTGCATTATACCTCTTCGGCCAGCTCAATG
259 AGCACACAAAGGGGGACCGGACTGATCCCCGGCTTACGCATTATGCCTCTCCGGCTGGCTCAGT-
* *
21602154 C-CCG-AATGCTCGTTTCGTG
323 CACCGCAA-GCTCATTTCATG
* * * **
21602173 GGTTAACTTATGCATACGAAGTTCATTGCCAGTCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
21602211 ATCAGATTGG
Statistics
Matches: 597, Mismatches: 106, Indels: 51
0.79 0.14 0.07
Matches are distributed among these distances:
341 1 0.00
342 171 0.29
343 220 0.37
344 4 0.01
345 1 0.00
347 1 0.00
350 1 0.00
351 2 0.00
352 2 0.00
353 8 0.01
354 181 0.30
355 5 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (342 bp):
GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCGGACCAGACCGAGGGTTACGACAGCAAGATCAGCAGCAAGCAGAGGGGACACGGACGATCCCC
GGCTTATGCATTCTACCCCTCCAACTGGCTGAGCACCTGTACACCCATTTCGTGGGTTGGCTTAG
GCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGATGTGGCAGCGGGACCGACAG
CACACAAAGGGGGACCGGACTGATCCCCGGCTTACGCATTATGCCTCTCCGGCTGGCTCAGTCAC
CGCAAGCTCATTTCATG
Found at i:21601887 original size:342 final size:343
Alignment explanation
Indices: 21601476--21602210 Score: 953
Period size: 343 Copynumber: 2.1 Consensus size: 343
21601466 GCACCCGTAA
* * *
21601476 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* *
21601541 CCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGCAAGATCAGCAGCACA-CA-AGGGGAC
66 CCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCAAGATCAGCAGCA-AGCAGAGGGGAC
* * **
21601604 -CGGACAGGTCCCCAGG-TTATGCATTCTACCTCTCC-GGTCGGCTGAGCACCTGTACACCCATT
130 ACGGAC-GATCCCC-GGCTTATGCATTCTACCCCTCCAACT-GGCTGAGCACCTGTACACCCATT
**
21601666 TCGTGGGTTGGCTTAGG-CATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGATG
192 TCGTGCATTGGCTTAGGAC-TAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGATG
** * *
21601730 TGGCAGCGGGACCGACAGCACGTAGAGGGGGACCGGGCTGAT-CTCTGGCTTGTGCATTATGCCT
256 TGGCAGCGGGACCGACAGCACACAGAGGGGGACCGGGCCGATCCTC-GGCTTGTGCATTATACCT
** * * *
21601794 CTTCGGCTGGCTCAGTGATCGCAT
320 CTTCGGCCAGCTCAATGACCGAAT
* * * *
21601818 GCTCGTTTCGTGGGTTGACTTATGCGTACGGAGTTCATCCCTATTGTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* * * * * * * *
21601883 CCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGTCAGTAGGATCGGCAGCAAGCAGGGGGGACA
66 CCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCAAGATCAGCAGCAAGCAGAGGGGACA
* * * *
21601948 GGGTCGATCCCCGGCTTGTGCATTCTACCCCTCCAACTGGCTGAGCACCTGTACACCCGTTTCGT
131 CGGACGATCCCCGGCTTATGCATTCTACCCCTCCAACTGGCTGAGCACCTGTACACCCATTTCGT
* * *
21602013 GCATTGGCTTAGGACTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCA
196 GCATTGGCTTAGGACTAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGATGTGGCA
* *
21602078 GCGGGATCGACAGTACACAGAGGGGGACCGGGCCGATCCTCGGCTTGTGCATTATACCTCTTCGG
261 GCGGGACCGACAGCACACAGAGGGGGACCGGGCCGATCCTCGGCTTGTGCATTATACCTCTTCGG
*
21602143 CCAGCTCAATGCCCGAAT
326 CCAGCTCAATGACCGAAT
* * **
21602161 GCTCGTTTCGTGGGTTAACTTATGCATACGAAGTTCATTGCCAGTCTAAG
1 GCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAG
21602211 ATCAGATTGG
Statistics
Matches: 336, Mismatches: 50, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
341 1 0.00
342 105 0.31
343 222 0.66
344 8 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (343 bp):
GCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCAAGATCAGCAGCAAGCAGAGGGGACA
CGGACGATCCCCGGCTTATGCATTCTACCCCTCCAACTGGCTGAGCACCTGTACACCCATTTCGT
GCATTGGCTTAGGACTAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGATGTGGCA
GCGGGACCGACAGCACACAGAGGGGGACCGGGCCGATCCTCGGCTTGTGCATTATACCTCTTCGG
CCAGCTCAATGACCGAAT
Found at i:21601893 original size:26 final size:26
Alignment explanation
Indices: 21601844--21601893 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
21601834 GACTTATGCG
* *
21601844 TACGGAGTTCATCCCTATTGTAAGCA
1 TACGGAGTTCATCCCTAGTCTAAGCA
21601870 TACGGAGTTCATTCCC-AGTCTAAG
1 TACGGAGTTCA-TCCCTAGTCTAAG
21601894 ATTGGACCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATCCCTAGTCTAAGCA
Found at i:21602562 original size:26 final size:26
Alignment explanation
Indices: 21602512--21602564 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21602502 GTTGACTTAG
*
21602512 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCACAGTCTAA
21602538 GCATACGAAGTTCATTCCACA-TCTAA
1 GCATACGAAGTTCA-TCCACAGTCTAA
21602564 G
1 G
21602565 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCACAGTCTAA
Found at i:21603042 original size:26 final size:26
Alignment explanation
Indices: 21603013--21603065 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21603003 GTTGGCTTAG
* *
21603013 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
21603039 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21603065 G
1 G
21603066 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21603780 original size:26 final size:26
Alignment explanation
Indices: 21603750--21603802 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21603740 GTTGACTTAG
21603750 GCATACGA-AGTTCATCCCCAGTCTAA
1 GCATA-GAGAGTTCATCCCCAGTCTAA
* *
21603776 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATAGAGAGTTCATCCCCAGTCTAA
21603802 G
1 G
21603803 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATAGAGAGTTCATCCCCAGTCTAA
Found at i:21604068 original size:158 final size:158
Alignment explanation
Indices: 21603776--21604118 Score: 415
Period size: 158 Copynumber: 2.2 Consensus size: 158
21603766 CCCAGTCTAA
* * *
21603776 GCATATAGAGTTCATTCCCAGTCTAAGATCAGACCAGCCCGAGGGTTACGATAGCAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGATAGCAGGATCGACA
* * * * * * *
21603841 GTATACAAGAGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGCCGACTCAGCGCT
66 GCACACAAGAGGGACCGGGCCGATCCCCGGCTTACACATTCTGCCTCTCCGACAGACTCAGCGCC
21603906 CGTACGCTCGTTTCGTCGGTTGACTTAG
131 CGTACGCTCGTTTCGTCGGTTGACTTAG
* * *
21603934 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGTGGGTTACAGCA-A-CAGGATCGA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAC-G-ATAGCAGGATCGA
* * * * * * *
21603997 CAGCACAC-AGAGGGGACCGGGCTGATCCCCGGCTTGCATATTCTGCCTCTTCGATAGGCTGAGC
64 CAGCACACAAGA-GGGACCGGGCCGATCCCCGGCTTACACATTCTGCCTCTCCGACAGACTCAGC
* * *
21604061 GCCCGTACGCTTGTTTCGTGGGTTGGCTTAG
128 GCCCGTACGCTCGTTTCGTCGGTTGACTTAG
21604092 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACAGAGTTCATTCCCA-GTCTAAG
21604119 CCCCAGCCGG
Statistics
Matches: 158, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
157 6 0.04
158 149 0.94
159 2 0.01
160 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGATAGCAGGATCGACA
GCACACAAGAGGGACCGGGCCGATCCCCGGCTTACACATTCTGCCTCTCCGACAGACTCAGCGCC
CGTACGCTCGTTTCGTCGGTTGACTTAG
Found at i:21604150 original size:158 final size:158
Alignment explanation
Indices: 21603776--21604203 Score: 400
Period size: 158 Copynumber: 2.7 Consensus size: 158
21603766 CCCAGTCTAA
* * * *
21603776 GCATATAGAGTTCATTCCCAGTCTAAGATCAGACCAG-CCCGAGGGTTAC-GATAGCAGGATCGA
1 GCATACAGAGTTCATTCCCAGTCTAAGACCAGACCAGATCC-TGGGTTACAG-TAGCAGGATCGA
* * * * * * *
21603839 TAGTATACA-AGAGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGCCGACTCAGC
64 CAGCATACAGAG-GGGACCGGGCTGATCCCCGGCTTACACATTCTGCCTCTCCGACAGACTCAGC
*
21603903 GCTCGTACGCTCGTTTCGTCGGTTGACTTAG
128 GCCCGTACGCTCGTTTCGTCGGTTGACTTAG
* * * * *
21603934 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGTGGGTTACAGCAACAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGACCAGACCAGATCCTGGGTTACAGTAGCAGGATCGACA
* * * * * * *
21603999 GCACACAGAGGGGACCGGGCTGATCCCCGGCTTGCATATTCTGCCTCTTCGATAGGCTGAGCGCC
66 GCATACAGAGGGGACCGGGCTGATCCCCGGCTTACACATTCTGCCTCTCCGACAGACTCAGCGCC
* * *
21604064 CGTACGCTTGTTTCGTGGGTTGGCTTAG
131 CGTACGCTCGTTTCGTCGGTTGACTTAG
* * *** *
21604092 GCATACAGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGA-CCTAGGGTTGTGGTAGCAGGACCG
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ACCAGACCAGATCCT-GGGTTACAGTAGCAGGATCG
* * * * * *
21604154 ACAGCTTGCAGAGGGGGATCGGGCTGATCCCCGACTTACGCATTATGCCT
63 ACAGCATACAGA-GGGGACCGGGCTGATCCCCGGCTTACACATTCTGCCT
21604204 TTCTGGCCGG
Statistics
Matches: 218, Mismatches: 45, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
157 5 0.02
158 175 0.80
159 38 0.17
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGACCAGACCAGATCCTGGGTTACAGTAGCAGGATCGACA
GCATACAGAGGGGACCGGGCTGATCCCCGGCTTACACATTCTGCCTCTCCGACAGACTCAGCGCC
CGTACGCTCGTTTCGTCGGTTGACTTAG
Found at i:21611125 original size:26 final size:26
Alignment explanation
Indices: 21611096--21611148 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21611086 CCGATCCGAT
*
21611096 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
21611122 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
21611148 C
1 C
21611149 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:21611633 original size:159 final size:157
Alignment explanation
Indices: 21611137--21611884 Score: 695
Period size: 159 Copynumber: 4.7 Consensus size: 157
21611127 ACTGGGGATA
* * * *
21611137 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCGGACCGAAGAGGCAT
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCAT
* * * *
21611202 AATGCACAAGCCGGGGATCGGCC-CAGTCCCCTCTACGTGCTGCC-AGTCCCGCTACCACAACCC
66 AATGCGCAAGCCGGGGATCGGCCTGA-TCCCCTCTGCGTGCTGCCGA-TCCCACTACCACAACCC
*
21611265 TCGGTCCAACTGGGCTTAGACATGGAATG
129 TCGGTCCGACTGGGCTTAGACATGGAATG
* * * *
21611294 AACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGCGCTTAGCC-AGCCGGAGAGGCA
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGA-CCGAAGAGGCA
* * * ** *
21611358 GAATGCGCAAGCCGGGGATCGG-CTCGAT-CCCTCTTGCGTGCTGTCGATCCGACTGTCGCAACC
65 TAATGCGCAAGCCGGGGATCGGCCT-GATCCCCTC-TGCGTGCTGCCGATCCCACTACCACAACC
**
21611421 CTCGGTCCGATCTGATCTTAGAC-TAGGAATG
128 CTCGGTCCGA-CTGGGCTTAGACAT-GGAATG
* * * *
21611452 AACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGAGCCGACTGAAGAGGCAT
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCAT
* *
21611517 AATACGCAAGCCGGGGATCGGCCTGATCCCCTTCTGCATGCTGCCGATCCCACTACCACAACCCT
66 AATGCGCAAGCCGGGGATCGGCCTGATCCCC-TCTGCGTGCTGCCGATCCCACTACCACAACCCT
* *
21611582 CGATTCGACTGGGGCTTAGACATGGAATG
130 CGGTCCGACT-GGGCTTAGACATGGAATG
* * * * * * * * *
21611611 AACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATCCGAGCGCTCAACCGACC-AGAGAGGCA
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGA-AGAGGC-
* * * * * ** * * *
21611675 AAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGTTGTAGATCTCGCTACCAGAACCC
64 ATAATGCGCAAGCCGGGGATCGGCCTGATCCCCTCTGCGTGCTGCCGATCCCACTACCACAACCC
* * *
21611740 TCGGTCTGGCTGGGGCTTAGACATGGAATC
129 TCGGTCCGACT-GGGCTTAGACATGGAATG
* ** * * * * * *
21611770 AACTCCCTATGCCTAAGCCAACCCATAAAAC-AGGTGTGTAGGGTGCTCAGTCGACCGAAGAGGT
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTG-CGGGCGCTGAGCCGACCGAAGAGGC
* * * * * * *
21611834 AAAATGCGCATGCCGAGGATCGACCCGGTCCCC-CTGCATGCTGGCCGATCC
64 ATAATGCGCAAGCCGGGGATCGGCCTGATCCCCTCTGCGTGCT-GCCGATCC
21611885 TACTGTCGCA
Statistics
Matches: 481, Mismatches: 91, Indels: 36
0.79 0.15 0.06
Matches are distributed among these distances:
156 7 0.01
157 105 0.22
158 105 0.22
159 214 0.44
160 49 0.10
161 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCAT
AATGCGCAAGCCGGGGATCGGCCTGATCCCCTCTGCGTGCTGCCGATCCCACTACCACAACCCTC
GGTCCGACTGGGCTTAGACATGGAATG
Found at i:21612320 original size:26 final size:26
Alignment explanation
Indices: 21612291--21612343 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21612281 CCGATCCAAT
21612291 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
21612317 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21612343 C
1 C
21612344 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21612578 original size:157 final size:155
Alignment explanation
Indices: 21612317--21612816 Score: 503
Period size: 159 Copynumber: 3.2 Consensus size: 155
21612307 ACTCCGTATG
* * *
21612317 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA-CCACGAAACTGAGCGTGCCAGGCCTCAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-TGAGCGTG-CAGGGCTCA-
* * *
21612381 GCCGATCGGAGAGGTAGAATGTGCAAGCCGGGGATCGCCCGATCCCC-CTGCGTGCTAT-GATCC
63 GCCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATTGCCCG-TCCCCTCTGCGTGCTGTCGATCC
* * *
21612444 TGCCTGTCGCAACCCTCAGTCTGGTCCGAT
127 TGCCTGCCGCAACCCTC-GTCCGGTTCGAT
* * *
21612474 CTTAGAC-TGGGAATGAACTCCGTAAGCCTAAGTCAACCCATGAAATGAGCGTGCAGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGG-GCTCAG
* * * * * *
21612538 CTGGTCGGAGAGGTATAATGCGCAAGTCGGGGATTGGCCCGGTCCCCCTCTACATGCTGTCGATC
64 CCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATT-GCCC-GT-CCCCTCTGCGTGCTGTCGATC
* * * **
21612603 C--CACTGCCACAACCCTCGGTCCAGTTGGGG
126 CTGC-CTGCCGCAACCCTC-GTCCGGTTCGAT
* * * *
21612633 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGG-GCTCAGC
* * * *
21612698 CGATCGGAGAGGCAGAATGCGCAAGCCGAGGATTGCCTTGTCCCCTCTGCGTGCTGTCGATACTG
65 CGATCGGAGAGGTAGAATGCGCAAGCCGGGGATTGCC-CGTCCCCTCTGCGTGCTGTCGATCCTG
* *
21612763 -CTGCCGTAACCCTCGACCCGGTTCGAT
129 CCTGCCGCAACCCTCG-TCCGGTTCGAT
21612790 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
21612817 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 50, Indels: 30
0.78 0.14 0.08
Matches are distributed among these distances:
156 37 0.13
157 108 0.39
158 18 0.06
159 109 0.39
160 6 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGGCTCAGCC
GATCGGAGAGGTAGAATGCGCAAGCCGGGGATTGCCCGTCCCCTCTGCGTGCTGTCGATCCTGCC
TGCCGCAACCCTCGTCCGGTTCGAT
Found at i:21612826 original size:26 final size:26
Alignment explanation
Indices: 21612790--21612842 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21612780 CCGGTTCGAT
21612790 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21612816 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21612842 C
1 C
21612843 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21620210 original size:159 final size:159
Alignment explanation
Indices: 21619815--21620232 Score: 468
Period size: 159 Copynumber: 2.6 Consensus size: 159
21619805 AACTCCGTAT
*
21619815 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCGCGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* ** *
21619880 CTGGCCGAAGAGGTAGAATGCGCAAGTTGGGGATCGGCCTGATCCCCCCCTGCGTGCTGTCGATC
66 CTGGCCGAAGAGGTAGAATGCGTAAGCCGGGGATCAGCCTGATCCCCCCCTGCGTGCTGTCGATC
** * *
21619945 CTACTGCCGTAACCCTCAGTCTGGTTTGA
131 CTACTGCCACAACCCTCAGTCTGGCTGGA
* * * * * * * *
21619974 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACTAGCATGCAGGCACTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * **
21620038 GCTGGCCGAAGAGGCATAATGCGTAAGCCGGGGATCAG-CTCGATCCCCTTCTGCGTGCTG-CTG
65 GCTGGCCGAAGAGGTAGAATGCGTAAGCCGGGGATCAGCCT-GATCCCCCCCTGCGTGCTGTC-G
* * * *
21620101 GTCTTACTGCCACAACCCTCGGT-TCGGCTGGG
128 ATCCTACTGCCACAACCCTCAGTCT-GGCTGGA
* * *
21620133 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACG-GACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCACTCA
** * *
21620197 GCCAGTCGGAGAGGTAGAATGCGTAAGCCGGGGATC
65 GCTGGCCGAAGAGGTAGAATGCGTAAGCCGGGGATC
21620233 GGTCCGGTCC
Statistics
Matches: 211, Mismatches: 42, Indels: 12
0.80 0.16 0.05
Matches are distributed among these distances:
158 6 0.03
159 204 0.97
160 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CTGGCCGAAGAGGTAGAATGCGTAAGCCGGGGATCAGCCTGATCCCCCCCTGCGTGCTGTCGATC
CTACTGCCACAACCCTCAGTCTGGCTGGA
Found at i:21620321 original size:26 final size:25
Alignment explanation
Indices: 21620286--21620343 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 25
21620276 CTCGACCCGA
21620286 TCCGAT-CTTAGACTGGGA-ATGAAC
1 TCCGATGCTTAGACT-GGACATGAAC
21620310 TCCGTATGCTTAGACTGGACATGAAC
1 TCCG-ATGCTTAGACTGGACATGAAC
21620336 TCCGATGC
1 TCCGATGC
21620344 CTATGTCAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
24 4 0.13
25 9 0.29
26 18 0.58
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (25 bp):
TCCGATGCTTAGACTGGACATGAAC
Found at i:21620700 original size:26 final size:26
Alignment explanation
Indices: 21620671--21620723 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21620661 CTAGTCCGAT
21620671 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
21620697 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21620723 C
1 C
21620724 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21621188 original size:158 final size:155
Alignment explanation
Indices: 21620697--21621189 Score: 388
Period size: 158 Copynumber: 3.1 Consensus size: 155
21620687 ACTCCGTATG
** * * * * *
21620697 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAATGC-TC-
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAACGTGCG--GGCGTCG
* ** * ** * *
21620759 AACCGATCGGAGAGGCAGAATGCACAAGTCAAGGATTGGCCCGATCCCCCCTGCGTGCTGTCGAT
63 AGCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGA-TCGCCCGGTCCCCCCTGCGTGCTGTCGAT
* ** * * *
21620824 CCT-GTTATCGCAACCCTCAGTCCGATGGA
127 CCTACTGCT-GCAACCCTCGGTCGGTTGGA
* * * * *
21620853 TCTTAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGTTGAG
1 -CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAACGTGCGGGCGTCGAG
** * * ** *
21620918 CCGGTTGGAAAGGCATAATG-GCAAGTCGGGGATCGACATGGTCCCCCTCTGCGTGCTGTCGGTC
65 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCG-CCCGGTCCCCC-CTGCGTGCTGTCGATC
* ** * *
21620982 CCACTGCCACAACCCTCGGTCCGAATAGGA
128 CTACTGCTGCAACCCTCGGT-CG-GTTGGA
* * **
21621012 ATTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCCCAAAATGGGCGTGCGGGCG-CGCA
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAACGTGCGGGCGTCG-A
* *
21621075 GTCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATC
64 GCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATC-GCCCGGTCCCCCCTGCGTGCTGTCGATC
* *
21621140 CTACTGCTGCAACCTTCGGTCTGGTTCGA
128 CTACTGCTGCAACCCTCGGTC-GGTTGGA
21621169 CCTTAGACTGGGAATGAACTC
1 -CTTAGACTGGGAATGAACTC
21621190 ATATGCTTAG
Statistics
Matches: 263, Mismatches: 58, Indels: 29
0.75 0.17 0.08
Matches are distributed among these distances:
155 4 0.02
156 19 0.07
157 96 0.37
158 117 0.44
159 26 0.10
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (155 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAACGTGCGGGCGTCGAGC
CGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGCCCGGTCCCCCCTGCGTGCTGTCGATCCTA
CTGCTGCAACCCTCGGTCGGTTGGA
Found at i:21621913 original size:26 final size:26
Alignment explanation
Indices: 21621876--21621953 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
21621866 GCTCAAAATA
21621876 TTAGAC-TGGGAATGAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
21621902 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
21621928 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
21621954 CTAAGCAAAC
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 50 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:21622261 original size:159 final size:158
Alignment explanation
Indices: 21621926--21622374 Score: 500
Period size: 159 Copynumber: 2.8 Consensus size: 158
21621916 AACTCCGTAT
21621926 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCGTGCGGCGC-C-CA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGG-GCACTCA
* * * *
21621989 GCCAGTCGGAGAGGCAGAACGTGCAAGCCGGGGATTGACCTGGTCCCCCTAC-GTCT--TGTCGA
64 GCCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCT-CTGTGTGCTGTCGA
* * *
21622051 TCCTGCTGCCACAACCCTCAGTCTGATTTGA
128 TCCTGCTGCCACAACCCTCAGTCCGACTGGA
* * * * *
21622082 TCTTAGACTTGGTATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTAAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * *
21622147 CCA-ACTGAAGAGGCATAATGCGCAAGTCGGGGACCGACCTGGTCCCCCTCTGTGTGCTGTCGGT
65 CCAGTC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCTCTGTGTGCTGTCGAT
* * *
21622211 CCTGCTGCCACGACCCTC-GATCCGGCTGGG
129 CCTGCTGCCACAACCCTCAG-TCCGACTGGA
* * * ** *
21622241 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCATGAAATAAGCGTGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * *
21622306 CCAGTCGGAGAGGTAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGATC
65 CCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCTCTGTGTGCTGTCGATC
21622370 CTGCT
130 CTGCT
21622375 ATCGCAACCC
Statistics
Matches: 241, Mismatches: 43, Indels: 16
0.80 0.14 0.05
Matches are distributed among these distances:
155 2 0.01
156 54 0.22
157 45 0.19
158 20 0.08
159 119 0.49
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCTCTGTGTGCTGTCGATCC
TGCTGCCACAACCCTCAGTCCGACTGGA
Found at i:21623309 original size:26 final size:26
Alignment explanation
Indices: 21623268--21623320 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21623258 CCGGTTTGAT
*
21623268 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21623294 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
21623320 C
1 C
21623321 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21624035 original size:159 final size:156
Alignment explanation
Indices: 21623641--21624068 Score: 411
Period size: 159 Copynumber: 2.7 Consensus size: 156
21623631 AACTCTGTAC
* *
21623641 GCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCATGTGGGCGCTCA
1 GCTTAGACATGGAATGAACTCGC-TATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTTA
* * * * * * *
21623705 GCCGGCTAGAAAGGCAGAATGCGCAAGCTGGGGATTGACCCGATCCCCCCTGCGTGCTATCAATC
65 GCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTACCAACC
*
21623770 CTGCTACCGCAACCCTCGATCCGGTCTGA
130 CTGCTA-C-CAACCCTCGATCCGGCCTGA
* * * * *
21623799 TCTTAGAC-TGGGAATGAACTTCG-TATGCCTAAGTCAACCCATGAAACGAGTGTTTGGGCG-TT
1 GCTTAGACAT-GGAATGAAC-TCGCTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTT
* * * * * * * *
21623861 GAGCCGGTC-GAAGAGGCATAATACACAAGCCGGGGATCGGCCCGGTCCCCCTCTATGTGCTGCC
64 -AGCCGGCCAG-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTACGTGCTACC
** * *
21623925 AGACCCATTTTGA-CAACCCTCGGTCC-GCCTAGG
126 A-ACCC-TGCT-ACCAACCCTCGATCCGGCCT-GA
* *
21623958 GCTTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTTAG
* * *
21624023 TCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGATCCGATCCC
66 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCC
21624069 TCCTGCATGC
Statistics
Matches: 213, Mismatches: 43, Indels: 27
0.75 0.15 0.10
Matches are distributed among these distances:
157 3 0.01
158 92 0.43
159 108 0.51
160 7 0.03
161 2 0.01
162 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTTAG
CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTACCAACCC
TGCTACCAACCCTCGATCCGGCCTGA
Found at i:21624199 original size:849 final size:845
Alignment explanation
Indices: 21621901--21625067 Score: 2449
Period size: 867 Copynumber: 3.7 Consensus size: 845
21621891 ACTCCGTATG
* *
21621901 CTTAGACAT-GGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACC
1 CTTAGAC-TGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
21621965 CACGAAACGAGCGTGCGGCGCCCAGC-CAGTCGG--AG--AGGCAGAACGTGCAAGCCGGGGATT
65 CACGAAACGAGCATGCGG-G--CA-CTCAGTCGGCTAGAAAGGCAGAATGCGCAAGCTGGGGA-T
* * * * * * * * * *
21622025 GACCTGGT-CCCCCTACGT-CTTGTCGATCCTGCTGCCACAACCCTC-AGTCTGATTTGATCTTA
125 GACCCGATCCCCCCTGCGTGC-TATCAATCCTGCTACCGCAACCCTCGA-TCCGGTCTGATCTTA
* * * * * * ** * ***
21622087 GACTTGGTATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTAAGC-CAA
188 GACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCATTTGGGTGCTGAGCTGGT
* * * * ** * ** *
21622151 CTGAAGAGGCATAATGCGCAAGTCGGGGACCGACCTGGTCCCCCTCTGTGTGCTGTCGGTCCTGC
253 C-GAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGACCCTTC
* * *
21622216 TGCCACGACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTC
317 TG--ACAACCCTCGGTCC-GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* *** * * * * * * * *
21622281 ATGAAATAAGCGTGCGAGCACTCAGCCAG-TCGGAGAGGTAGAATGCGTAAGCCGGGGATCGACC
379 ACGAAACGGGCGTGCGGGCGCTAAGTCGGCT-GGAGAGGCAGAATGCGCAAGCC-GGGATCG-TC
* * * ** ** * **
21622345 CGGTCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCATGT-TCGATCTTAGACTG
441 CGAT-CCCCCTGCATGCTGTCGATCTTATTGCCGCAACCCTCGATCCGGTCT-GATCTTAGACTG
* * * * *
21622409 AGAGTAAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAGGTAAACCCACGAAAAT-
504 -GAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACG-AAATG
* * * * * ** * * * * * *
21622473 AGCATGCGGGCACTCAG-CAGGCCGGAGGGGCATAAGGCGCAAGTCGGGGATTAGCCCGATCCCC
567 AGCGTGCAGGCACTCAGTCA-GTCGGAGAGGCACAATACACAA--CGAGGATCA-ACTGA--CAC
* * * * * * * * * * * **
21622537 TTCTA-CATGCTGTCGATCC-CGCTTCCGGTCCTGCTGCCACAACCCTCGGTTCGGTTGGGGCTT
626 -T-AAGCGT-CAGTGGATCCATG--ACCAGTCCTGCT---ACGA-CTTCGATCCGAAT---GCTT
* * * * * * ** *
21622600 AGACCTGGAATGAACTCTGTATGCCTAAGCCAACTCATAAAATGAGCGTGCAGGTGCTCAA-CCG
679 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGACGCTCAATCGG
* * * * * * * * * **
21622664 ACTGAAAAGGTAGAATGCACAAGTCGGGGATCAGCTCGATCCCCCCTGCGTGCTACCGATCCTGC
744 CCAG-AGAGGTAGAATGCACAAGCCGAGGATCGGCTCGATCCCTCCTACATGCTGTCGATCCTGC
*
21622729 TGCTGGTCCTGTTGCCGCAACCCTCGGTCCGGTCCGAT
808 TGCTGGTCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* *
21622767 GTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GAATTGAACTCCGTATGCCTAAGCCAACC
1 CTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAA-TGAACTCCGTATGCCTAAGCCAACC
* * * *** **
21622831 CACGAAACGAGCATACGGGCACTCAGTCGGCTGGAGAAA--TAGAATGCGCTAG-TCAACGACCA
65 CACGAAACGAGCATGCGGGCACTCAGTCGGCT--AGAAAGGCAGAATGCGCAAGCT-GGGGA-TG
* * * * * *
21622893 ACCCAATCCCCTCCTACGTGCTATCAATCCTGCTACCGTAACCCTCGGTCCGATCCGATCTTAGA
126 ACCCGATCCCC-CCTGCGTGCTATCAATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGA
* * * * * *
21622958 CTGGGAATGAAC-TCTGTATGCCTAAGCCAATCGATGAAATGAGCATTTGGGTGCTGAGCTGATT
190 CTGGGAATGAACTTC-GTATGCCTAAGTCAACCCATGAAACGAGCATTTGGGTGCTGAGCTGGTC
* * * * * * **
21623022 GAAGAGGCATAATGTGCAAACCAGGGATCAGTCCGGTCCCCCTCTACGTGCTACCG-GTCTTGCT
254 GAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGACCCTT-CT
* * *
21623086 GCCACAACCCTCAGTTTCGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCA
318 G--ACAACCCTC-GGTCCGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * *
21623151 CGAAATGGGCGTACGGGCGCTCAGTCAGCTGGAGAGGCAGAATGCACAAGCCGGGTATCGGTCTG
380 CGAAACGGGCGTGCGGGCGCTAAGTCGGCTGGAGAGGCAGAATGCGCAAGCCGGG-ATC-GTCCG
* * * * * * *
21623216 GTCTGCCCTACATGCTGTTGATCCTATTGCC-CAACCTTCGATCCGGTTTGATCTTAGACTGGGA
443 ATC-CCCCTGCATGCTGTCGATCTTATTGCCGCAACCCTCGATCCGGTCTGATCTTAGACT-GGA
* * *
21623280 ATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGTG
506 ATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCG
** *
21623345 TGCAGGCACTCAGTC-GATCGGAGAGGC-CGGT-C-GAA-GAGGTAT-AA-TG-CAC-AAGC-T-
571 TGCAGGCACTCAGTCAG-TCGGAGAGGCACAATACACAACGAGG-ATCAACTGACACTAAGCGTC
* * *
21623399 AG-GGAT-CA-GCCCGGTCCCT-CT-CG-GTTCGATCC-AAT-CTTAGAC-TGGAGATGAACTCC
634 AGTGGATCCATGACCAGT-CCTGCTACGACTTCGATCCGAATGCTTAGACATGGA-ATGAACTCC
** * * * * *
21623455 GTATGCCTAAGTTAACCCATGAAATGAGCGTGCAGACGTTC-AGCTGGTCAGAGAGGTAGAATGC
697 GTATGCCTAAGCCAACCCATGAAACGAGCGTACAGACGCTCAATC-GGCCAGAGAGGTAGAATGC
* * * * *
21623519 ACAAGCCGAGGATCGG-TCGGTCCCTTCCGGCGTGCTATTGATCCTGCTGTTGATCCTGCTACCG
761 ACAAGCCGAGGATCGGCTCGATCCC-T----C---C---T-A-CATGCTGTCGATCCTGCTGCTG
* *
21623583 GTCCTGCTGCCGCAAGCCTTGGTCCGGTCCGAT
813 GTCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* * *
21623616 CATAGATTGGGAATGAACTCTGTACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * *
21623681 ACGAAACGAGCATGTGGGCGCTCAGCCGGCTAGAAAGGCAGAATGCGCAAGCTGGGGATTGACCC
66 ACGAAACGAGCATGCGGGCACTCAGTCGGCTAGAAAGGCAGAATGCGCAAGCTGGGGA-TGACCC
21623746 GATCCCCCCTGCGTGCTATCAATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGG
130 GATCCCCCCTGCGTGCTATCAATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGG
** * * *
21623811 AATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGTGTTTGGGCGTTGAGCCGGTCGAAGAG
195 AATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCATTTGGGTGCTGAGCTGGTCGAAGAG
* * * *
21623876 GCATAATACACAAGCCGGGGATCGGCCCGGTCCCCCTCTATGTGCTGCCAGACCCATTTTGACAA
260 GCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCC-GACCC-TTCTGACAA
* *
21623941 CCCTCGGTCCGCCTAGGGCTTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCACGAAACG
323 CCCTCGGTCCG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
* **
21624006 GGCGTGCGGGCGCTTAGTCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGATCCGATCCCTC
387 GGCGTGCGGGCGCTAAGTCGGCTGGAGAGGCAGAATGCGCAAGCC-GGGATCG-TCCGATCCC-C
** * * *
21624071 CTGCATGCTGTCGATCTTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGATTGGAAATGAACT
449 CTGCATGCTGTCGATCTTATTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGG-AATGAACT
*
21624136 CTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGC
513 CTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGC
* * * ** *
21624201 GCTCAGTCAGTCGGAGAGGCATAATACACAATCCGAGGATCAACCTGATCCCCTTCTGCGTCCTG
578 ACTCAGTCAGTCGGAGAGGCACAATACACAA--CGAGGATCAA-CTGA--CAC-TAAGCGT-CAG
* * * **
21624266 TTGATCCCATTACCAGTCCTGCTACCGTAACCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAA
636 TGGAT-CCATGACCAGTCCTGCTA-CG--A-CTTCGATCCGAAT---GCTTAGACATGGAATGAA
* * **
21624331 CTCCGTTTGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAATCGGCCAGAGAGGTAGAA
693 CTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGACGCTCAATCGGCCAGAGAGGTAGAA
* * * * *
21624396 TGCGCAAGTCGAGGATTGGCTCGATCCCTCCTACATGCTGTCGATCCTGCTGCTGGTCCTACTGT
758 TGCACAAGCCGAGGATCGGCTCGATCCCTCCTACATGCTGTCGATCCTGCTGCTGGTCCTGCTGC
* * *
21624461 CGCAACCCTCGGTCTGGTTCAAT
823 CGCAACCCTCGGTCCGGTCCGAT
*
21624484 CTTAGACTGGGAATGAACT-TCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACC
1 CTTAGACTGGGAATGAACTCT-GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * ** * * * *
21624548 CATGAAACAAGCATGCAGGTACTCAATCGACCGGAGAGGCAGAATGCACAAGCCGGGGATGGCCC
65 CACGAAACGAGCATGCGGGCACTCAGTCGGCTAGAAAGGCAGAATGCGCAAGCTGGGGATGACCC
* * * * * * *
21624613 GATCCCCCCTGCATGCTATCGATCCTACTGCTGCAACCCT-TAGTTCGGTCTGATCTTAGACTGG
130 GATCCCCCCTGCGTGCTATCAATCCTGCTACCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGG
* * * * * *
21624677 GAATGAACTGCGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGTGCTGAGCTAG-CTAAAA
194 GAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCATTTGGGTGCTGAGCTGGTC-GAAG
* * ** * * * * *
21624741 AGGCATAATGCGTAAGCCGAGGATCGGCTTGATCCCTCTCTGCGTGCTGTCGATCCCGTTGC-CA
258 AGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGA-CCC-TT-CTGA
21624805 CAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
320 CAACCCTCGGTCC-GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
** * * * *
21624870 ACGGGCGTGCGGATGCTAAG-CTGGCTGGAGAGGCAAAATGCGTAAGTCGAGGATCGGCTCGATC
384 ACGGGCGTGCGGGCGCTAAGTC-GGCTGGAGAGGCAGAATGCGCAAGCCG-GGATCGTC-CGAT-
* * * * * * *
21624934 CCCCCTGCGTGCTGCCAAACTTTTTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGAATGA
445 CCCCCTGCATGCTGTCGATCTTATTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGAATGA
** ** * *
21624999 ACTCCATATGCTTAGACTGGGGATGAACTCCGTATGAATAAGTCAACCCACGAAACGAGCATGCA
510 ACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCA
21625064 GGCA
575 GGCA
21625068 TTGAGCTGGC
Statistics
Matches: 1850, Mismatches: 343, Indels: 216
0.77 0.14 0.09
Matches are distributed among these distances:
836 12 0.01
837 75 0.04
838 3 0.00
841 2 0.00
842 5 0.00
844 2 0.00
847 12 0.01
848 278 0.15
849 271 0.15
850 11 0.01
851 6 0.00
852 3 0.00
854 4 0.00
855 7 0.00
857 4 0.00
860 3 0.00
862 7 0.00
863 12 0.01
865 8 0.00
866 149 0.08
867 335 0.18
868 263 0.14
869 265 0.14
870 8 0.00
871 2 0.00
873 1 0.00
875 7 0.00
876 2 0.00
880 80 0.04
881 13 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (845 bp):
CTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCATGCGGGCACTCAGTCGGCTAGAAAGGCAGAATGCGCAAGCTGGGGATGACCCG
ATCCCCCCTGCGTGCTATCAATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGA
ATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCATTTGGGTGCTGAGCTGGTCGAAGAGG
CATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGACCCTTCTGACAACCC
TCGGTCCGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCG
TGCGGGCGCTAAGTCGGCTGGAGAGGCAGAATGCGCAAGCCGGGATCGTCCGATCCCCCTGCATG
CTGTCGATCTTATTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGAATGAACTCTGTATGC
TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCACTCAGTC
AGTCGGAGAGGCACAATACACAACGAGGATCAACTGACACTAAGCGTCAGTGGATCCATGACCAG
TCCTGCTACGACTTCGATCCGAATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
TGAAACGAGCGTACAGACGCTCAATCGGCCAGAGAGGTAGAATGCACAAGCCGAGGATCGGCTCG
ATCCCTCCTACATGCTGTCGATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
Found at i:21624522 original size:26 final size:26
Alignment explanation
Indices: 21624484--21624536 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21624474 CTGGTTCAAT
*
21624484 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21624510 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21624536 C
1 C
21624537 CTAAGACAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21624855 original size:159 final size:157
Alignment explanation
Indices: 21624658--21625009 Score: 409
Period size: 159 Copynumber: 2.2 Consensus size: 157
21624648 ACCCTTAGTT
* * * * *
21624658 CGGTCTGATCTTAGACTGGGAATGAACTGCGTATGCCTAAGTCAACCCACGAAACGAGCATTCGG
1 CGGTCTGAGCTTAGACT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGG
* * * * *
21624723 GTGCTGAGCTAGCTAAAAAGGCATAATGCGTAAGCCGAGGATCGGCTTGATCCCTCTCTGCGTGC
65 ATGCTAAGCTAGCTAAAAAGGCAAAATGCGTAAGCCGAGGATCGGCTCGATCCC-CCCTGCGTGC
* * *
21624788 TGTCGATCCCGTTGCCACAACCCTCGGTC
129 TGCCAAACCCGTTGCCACAACCCTCGGTC
* * * *
21624817 CGG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCG
1 CGGTCT-GAGCTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCG
* ** * *
21624881 GATGCTAAGCTGGCTGGAGAGGCAAAATGCGTAAGTCGAGGATCGGCTCGATCCCCCCTGCGTGC
64 GATGCTAAGCTAGCTAAAAAGGCAAAATGCGTAAGCCGAGGATCGGCTCGATCCCCCCTGCGTGC
*** * *
21624946 TGCCAAACTTTTTGTCGCAACCCTCGGTC
129 TGCCAAACCCGTTGCCACAACCCTCGGTC
*
21624975 CGGTCTGATCTTAGACTGGAATGAACTCCATATGC
1 CGGTCTGAGCTTAGACTGGAATGAACTCCATATGC
21625010 TTAGACTGGG
Statistics
Matches: 161, Mismatches: 29, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
157 18 0.11
158 43 0.27
159 99 0.61
160 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (157 bp):
CGGTCTGAGCTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGA
TGCTAAGCTAGCTAAAAAGGCAAAATGCGTAAGCCGAGGATCGGCTCGATCCCCCCTGCGTGCTG
CCAAACCCGTTGCCACAACCCTCGGTC
Found at i:21625018 original size:25 final size:26
Alignment explanation
Indices: 21624984--21625034 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21624974 CCGGTCTGAT
21624984 CTTAGACT-GGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21625009 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21625035 AATAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21625328 original size:26 final size:26
Alignment explanation
Indices: 21625276--21625328 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21625266 CCGGTCCGAT
**
21625276 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTACATG
*
21625302 CTTAGACT-GGAGATGAATTCTACATG
1 CTTAGACTGGGA-ATGAACTCTACATG
21625328 C
1 C
21625329 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTACATG
Found at i:21625627 original size:12 final size:12
Alignment explanation
Indices: 21625612--21625642 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
21625602 GTGCTGTCAA
21625612 TCCTGCTGCTGG
1 TCCTGCTGCTGG
21625624 TCCTGCTGCTGG
1 TCCTGCTGCTGG
21625636 TCCTGCT
1 TCCTGCT
21625643 TCCATAACCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.35, G:0.29, T:0.35
Consensus pattern (12 bp):
TCCTGCTGCTGG
Found at i:21625697 original size:26 final size:26
Alignment explanation
Indices: 21625668--21625720 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21625658 CCGGTCTGAT
21625668 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
21625694 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21625720 C
1 C
21625721 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21626923 original size:26 final size:26
Alignment explanation
Indices: 21626885--21626937 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21626875 GGCTCAAAAT
21626885 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21626911 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21626937 C
1 C
21626938 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21627336 original size:159 final size:159
Alignment explanation
Indices: 21626910--21627360 Score: 445
Period size: 159 Copynumber: 2.9 Consensus size: 159
21626900 AACTCCGTAT
* * * *
21626910 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACGCACGAAACGAGCGTG-CGGCACCCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAG
** * * * * * *
21626974 CCAACCGGAAAGGCAGAACGCGCAAGTCGGGGATTGGCCTGGT-CCCCTCTGTGTGTTGTCGATC
66 CCAGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTCGATC
* **
21627038 ATGCTACCACAACCCTCAGTCTGGTCTGA
131 CTGCTACCACAACCCTCAGTCCAGTCTGA
* * * * * * *
21627067 TCTTAGAC-TGGTTATGAACTCTATATGCCTAAGTCAACCCACGAAATGAGCG-GTCGGGCCCTG
1 GCTTAGACATGG-AATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGT-GGGCACTC
* * * * * *
21627130 AGTC-GATCGGAGAGGCATAATGCGCT-AGTCAGGGATCGGCCTAGTCCCCCTCTGCATGCTGCC
64 AGCCAG-TCGGAGAGGCAGAATGCG-TAAGTCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTC
* * *
21627193 GGTCCTGCTGCCACAACCCTCAGTCCAG-CTGGG
127 GATCCTGCTACCACAACCCTCAGTCCAGTCT-GA
* ** *
21627226 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAG
*
21627291 CCAGTCGGAGAGGCAGAATGCGTAAG-CTGGGGATCGATCC-GGTCCCCC-CTGCGTGCTGTCGA
66 CCAGTCGGAGAGGCAGAATGCGTAAGTC-GGGGATCG-GCCTGGTCCCCCTCTGCGTGCTGTCGA
21627353 TCCTGCTA
129 TCCTGCTA
21627361 TCGCATCCCT
Statistics
Matches: 231, Mismatches: 50, Indels: 25
0.75 0.16 0.08
Matches are distributed among these distances:
156 4 0.02
157 41 0.18
158 59 0.26
159 119 0.52
160 8 0.03
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAG
CCAGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTCGATC
CTGCTACCACAACCCTCAGTCCAGTCTGA
Found at i:21627420 original size:26 final size:26
Alignment explanation
Indices: 21627384--21627436 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21627374 TCAGGTCCAT
21627384 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
21627410 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
21627436 C
1 C
21627437 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:21627779 original size:26 final size:26
Alignment explanation
Indices: 21627750--21627802 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21627740 CCGGTCCAAT
21627750 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
21627776 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21627802 C
1 C
21627803 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21627872 original size:366 final size:354
Alignment explanation
Indices: 21627188--21627897 Score: 863
Period size: 366 Copynumber: 2.0 Consensus size: 354
21627178 CCTCTGCATG
21627188 CTGCCGGTCCTGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATG
1 CTGCCGGTCCTGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATG
* * * *
21627253 CCTAAGCCAACCCATAAAACGAGCGTGTGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGTAAGC
66 CCTAAGCCAACCCAAAAAACGAGCGTGCGGGCGCTCAGCCAGCCGAAGAGGCAGAATGCGTAAGC
* * * * * * *
21627318 TGGGGATCGATCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTATCGCATCCCTCGGTCAGGTCCA
131 AGGGGATCAACCCGGTCCCCCCTACGTGCTGTCGATACTGCTATCGCAACCCTCGATCAGGTCCA
* *
21627383 TCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
196 TCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
** * * * * *
21627448 CACGAAAAGAGCGTGCGGGTGCTCAGCAGGCCGGAGGGGCATAAGGCGCAAGCCGGGGATCAACC
261 CACGAAAAGAGCGTGCGGGCACTCAGCAGGCCAGAGAGACAGAAGGCGCAAGCCGGGGACCAACC
*
21627513 CGAT-CCCCCTCTGCGTGCTGTCGATCCCA
326 CAATCCCCCCT-TGCGTGCTGTCGATCCCA
* * * * * **
21627542 CTGCTGGTCTTGCTGCCGCAACCCTCGGTCCAGCTGGGGCTTAGACCTGGAATGAACTCTGTATG
1 CTGCCGGTCCTGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATG
* *
21627607 CCTAAGCCAACCCAAAAAATGAGCGTGCGGGCGCTCAGTC-GACCGAAGAGGCAGAAT-CGTAAG
66 CCTAAGCCAACCCAAAAAACGAGCGTGCGGGCGCTCAGCCAG-CCGAAGAGGCAGAATGCGTAAG
* *
21627670 CAGGGGATCAACCCGGTCCCCTCCTAC-TGCTACAGATCCTACTACTGGTCCTACTGTTGCAACC
130 CAGGGGATCAACCCGGTCCCC-CCTACGTGCT---G-T-CGA-TACT-G--CTA---TCGCAACC
* *
21627734 CTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCG
182 CTCGATCAGGTCC-ATCTTAGACTGGGAATAAACTCCGTATGCTTAGAC-TGGGAATGAACTCCG
* * * * * *
21627798 TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCTAGAGAGACAGAATGTGC
245 TATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCACTCAGCAGGCCAGAGAGACAGAAGGCGC
*
21627863 AAGCCGGGGACCGACCCAATCCCCCCTTGCGTGCT
310 AAGCCGGGGACCAACCCAATCCCCCCTTGCGTGCT
21627898 ATCAATCCTG
Statistics
Matches: 298, Mismatches: 41, Indels: 22
0.83 0.11 0.06
Matches are distributed among these distances:
353 29 0.10
354 111 0.37
356 1 0.00
357 1 0.00
358 2 0.01
359 3 0.01
360 1 0.00
362 3 0.01
365 17 0.06
366 123 0.41
367 7 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (354 bp):
CTGCCGGTCCTGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATG
CCTAAGCCAACCCAAAAAACGAGCGTGCGGGCGCTCAGCCAGCCGAAGAGGCAGAATGCGTAAGC
AGGGGATCAACCCGGTCCCCCCTACGTGCTGTCGATACTGCTATCGCAACCCTCGATCAGGTCCA
TCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAAAGAGCGTGCGGGCACTCAGCAGGCCAGAGAGACAGAAGGCGCAAGCCGGGGACCAACC
CAATCCCCCCTTGCGTGCTGTCGATCCCA
Found at i:21628078 original size:159 final size:157
Alignment explanation
Indices: 21627776--21628278 Score: 406
Period size: 159 Copynumber: 3.2 Consensus size: 157
21627766 ACTCCGTATG
* * * *
21627776 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
* * * * *** * * * *
21627840 CCGGCTAG-AGAGACAGAATGTGCAAGCCGGGGA-CCGACCCAATCCCCCCTTGCGTGCTATCAA
65 CCGAC-AGAAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCTGGTCTCCCC-TGCATGCTACCGA
* * * **
21627903 TCCTGCCGTCGTAACCCTCGATCTGGTCTGAT
127 TCCTACTGCCACAACCCTCGATC-GGTCTGAT
* * * * * * *
21627935 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACTAAATGAGCATTCGGGTGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAGC
* ** *
21628000 CGACCAG-AGAGGCATAATGCGCAAGCCGGGGATCAGCCTGGTCTCCCTCTGTGTGCTACCGGTC
66 CGA-CAGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCTGGTCTCCC-CTGCATGCTACCGATC
* * **
21628064 CTACTGCCACAACCCTCAGTTCCG-CTGGGG
129 CTACTGCCACAACCCTC-GATCGGTCT-GAT
* * * *
21628094 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACTCACGAAACGGGCGTACGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
** * * * * **
21628158 CCGATTGAAGAGGCAGAATGTGCAAGCCGGGGATCGGTCTGGTCTGCCCTGCATGCTGTCGATCC
65 CCGACAGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCTGGTCTCCCCTGCATGCTACCGATCC
** * *
21628223 TACTGCTGCAACCCTCGGTCCGATCTGAT
130 TACTGCCACAACCCTCGAT-CGGTCTGAT
21628252 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
21628279 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 63, Indels: 23
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 56 0.21
159 203 0.75
160 8 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAGC
CGACAGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCTGGTCTCCCCTGCATGCTACCGATCCT
ACTGCCACAACCCTCGATCGGTCTGAT
Found at i:21628281 original size:26 final size:26
Alignment explanation
Indices: 21628252--21628304 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21628242 CCGATCTGAT
21628252 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21628278 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21628304 C
1 C
21628305 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21629121 original size:26 final size:26
Alignment explanation
Indices: 21629085--21629137 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21629075 CTGATCTGAT
21629085 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21629111 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21629137 C
1 C
21629138 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21629461 original size:26 final size:26
Alignment explanation
Indices: 21629432--21629484 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21629422 TCCGGTCGAA
21629432 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
21629458 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21629484 C
1 C
21629485 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21629917 original size:847 final size:845
Alignment explanation
Indices: 21626885--21630020 Score: 3134
Period size: 847 Copynumber: 3.7 Consensus size: 845
21626875 GGCTCAAAAT
*
21626885 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACGC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* ** * * * ** * *
21626950 ACGAAACGAGCGTGC-GGCACCCAGCCAACCGGAAAGGCAGAACGCGCAAGTCGGGGATTGGCCT
66 ACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGACCGACCC
* * * * * * * * *
21627014 GGTCCCCTCTGTGTGTTGTCGATCATGCTACCACAACCCTCAGTCTGGTCTGATCTTAGACTGGT
131 AGTCCCC-CTGCGTGCTATCGATCCTACTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGG
* ** * * *
21627079 TATGAACTCTATATGCCTAAGTCAACCCACGAAATGAGCG-GTCGGGCCCTGAGTCGA-TCGGAG
195 AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTG-CGGGCGCTGAGCCGACT-AGAG
* * * * * *
21627142 AGGCATAATGCGCTAGTCAGGGATCGGCCTAGTCCCCCTCTGCATGCTGCCGGTCCTGCTGCCAC
258 AGGCATAATACGCAAGTCGGGGATCGGCCTAGTCCCCCTCTACGTGCTGCCGGTCCAGCTGCCAC
* * **
21627207 AACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAA
323 AACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAA
* ** * * * * *
21627272 CGAGCGTGTGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGTAAGCTGGGGATCGATCCGGTCCC
388 CGGGCGTACGGGCGCTCAGCCGGTCGGAGAGGCAGAATACGTAAGCCGGGGATCGGTCCGGTACC
* * * * * * *
21627337 CCCT--GCGTGCTGTCGATCCTGCTATCGCATCCCTCGGTCAGGTC-CATCTTAGACTGGGAATA
453 CCCTACGCATG-TGTCGATCCTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATG
*
21627399 AACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGC
517 AACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* ** * * * * * * *
21627464 GGGTGCTCAGCAGGCCGGAGGGGCATAAGGCGCAAGCCGGGGATCAACCCGATCCCCCTCTGCGT
582 AGGCACTCAGCCGGTCGGAGAGGCATAATGCACAAGCCGGGGATCAGCCCGGT----C-C--C-T
* * * *
21627529 GCTGTCGATCCCACTGCTGGTCTTGCTGCCGCAACCCTCGGTCCAGCTGGGGCTTAGACCTGGAA
639 -CT-T---T---A-T-C-GGTCCTGCTGCCG-AACCTTCGGTCCAACTGGGGCTTAGACATGGAA
* * * *
21627594 TGAACTCTGTATGCCTAAGCCAACCCAAAAAATGAGCGTGCGGGCGCTCAGTCGACCGAAGAGGC
692 T-AACTCTGTATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGGCGCTCAGCCGGCTGAAGAGGC
* * * ** * * *
21627659 AGAAT-CGTAAGCAGGGGATCAACCCGGTCCCCTCCTACTGCTACAGATCCTACTACTGGTCCTA
756 AGAATGCGCAAGCAGGGGATCGACCCAGTCCCC-CCTACTGCTGTAGATCCTGCTGCTGGTCCTG
** *
21627723 CTGTTGCAACCCTC-GATCCGGTCCAA
820 CTGCCGCAACCCTCAG-TCCGGTCGAA
21627749 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 -CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
21627814 CATGAAACGAGCGTGCGGGCACTCAGCCGGCTAGAGAGACAGAATGTGCAAGCCGGGGACCGACC
65 CACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGACCGACC
* * * *** * *
21627879 CAATCCCCCCTTGCGTGCTATCAATCCTGCCGTCGTAACCCTC-GATCTGGTCTGATCTTAGACT
130 CAGT-CCCCC-TGCGTGCTATCGATCCTACTACCGCAACCCTCAG-TCTGGTCCGATCTTAGACT
* * * * * * * *
21627943 GGGAATGAACTTCGTATGCCTAAGCCAACCCACTAAATGAGCATTCGGGTGTTGAGCCGACCAGA
192 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGACTAGA
* * * * * ** *
21628008 GAGGCATAATGCGCAAGCCGGGGATCAGCCTGGTCTCCCTCTGTGTGCTACCGGTCCTA-CTGCC
257 GAGGCATAATACGCAAGTCGGGGATCGGCCTAGTCCCCCTCTACGTGCTGCCGGTCC-AGCTGCC
* * *
21628072 ACAACCCTCAGTTCC-GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCACG
321 ACAACCCTC-GGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACG
* * * ** * *
21628136 AAACGGGCGTACGGGCGCTCAGCCGATTGAAGAGGCAGAATGTGCAAGCCGGGGATCGGTCTGGT
385 AAACGGGCGTACGGGCGCTCAGCCGGTCGGAGAGGCAGAATACGTAAGCCGGGGATCGGTCCGGT
* *
21628201 -CTGCCCT--GCATGCTGTCGATCCTACTG-CTGCAACCCTCGGTCCGATCTGATCTTAGACTGG
450 AC-CCCCTACGCATG-TGTCGATCCTGCTGTC-GCAACCCTCGGTCCGATCTGATCTTAGACTGG
21628262 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
512 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* *
21628327 CGTGCAGGCGCTCAACCGATCGAAGAGGCCGGTCGAAGAGGCATAATGCACAAGCTGGGGATCAG
577 CGTGCA-G-G--C-A-C--TC----A-GCCGGTCGGAGAGGCATAATGCACAAGCCGGGGATCAG
* * * * *
21628392 CCCGGTCCC-C---CTCGAT-CTGAT-CC-AATCTT-AG----ACT-GGG----G--AT-G---A
629 CCCGGTCCCTCTTTATCGGTCCTGCTGCCGAACCTTCGGTCCAACTGGGGCTTAGACATGGAATA
** * * * * * *
21628434 ACTCTGTATGCCTAAGTTAACCCATGAAACGAGCGTGC-GACGCTCAGCAGG-TCAGAGAGGTAG
694 ACTCTGTATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGGCGCTCAGCCGGCTGA-AGAGGCAG
* * ** * *
21628497 AATGCGCAAGCCGGGGATCGACCGA-TCCCCCCCGGCTTGCTGTCGATCCTGCTGCTGGT-TTGC
758 AATGCGCAAGCAGGGGATCGACCCAGT-CCCCCCTAC-TGCTGTAGATCCTGCTGCTGGTCCTGC
* * * *
21628560 TGCCGCAAGCTTCAGTTCGGTCGAT
821 TGCCGCAACCCTCAGTCCGGTCGAA
* *
21628585 CTTAGGCTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * **
21628650 ACAAAATGAGCATGCGGGCACTCAACCGGCTGGAGAGGCAGAATGCGCAAGTCGGGGACCGACCC
66 ACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGACCGACCC
** ** * * * *
21628715 -GATCCCCCCTATGTGCTATCGATCCTACTACCGCAATGCTCGGTCTGATCCGATCCTAGATTGG
131 AG-T-CCCCCTGCGTGCTATCGATCCTACTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGG
** ** * * *
21628779 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTTGGGCGTTGAGCCGAC-CGAAA
194 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGACTAGAGA
* * * * * *
21628843 GGCATAATACGCAAGTCGGGGATCGGCCCAGTCCCCCTCTATGTGCTGTCGGGCCCGTTGCCACA
259 GGCATAATACGCAAGTCGGGGATCGGCCTAGTCCCCCTCTACGTGCTGCCGGTCCAGCTGCCACA
* *
21628908 ACCCTCGATCCA-CTTGGGGCTTAGACATGGAATGAAATCCCTACGCCTAAGCCAACCCACGAAA
324 ACCCTCGGTCCAGC-TGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAA
* * * * **
21628972 CGGGCGTACGGGCACTTAGCCGGTCGGAGAGGTAGAATACGCAAGCCAAGGATCGGTCCGGTACC
388 CGGGCGTACGGGCGCTCAGCCGGTCGGAGAGGCAGAATACGTAAGCCGGGGATCGGTCCGGTACC
* * * * *
21629037 CCCT--GTATGCTGTCGATCCTGCTGCCACAACCCTCGATCTGATCTGATCTTAGACTGGGAATG
453 CCCTACGCATG-TGTCGATCCTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATG
* *
21629100 AACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTAC
517 AACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * *
21629165 AGGCACTCAGCCGGTCGGAGAGGCATAATGCACAAGCCAGGGATTAGCCTGGTCCCTCTTTATCG
582 AGGCACTCAGCCGGTCGGAGAGGCATAATGCACAAGCCGGGGATCAGCCCGGTCCCTCTTTATCG
*
21629230 GTCCTGCTGCCGTAACCTTCGGTCCAACTGGGGCTTAGACATGGAATTAACTCCGTATGCCTAAG
647 GTCCTGCTGCCG-AACCTTCGGTCCAACTGGGGCTTAGACATGGAA-TAACTCTGTATGCCTAAG
* * * * * *
21629295 CCAACCCACGAAATGAGAGTGCGGGTGCTCAACCGGCTGAAGAGGCACAATGCGCAAGCTGGGGA
710 CCAACCCAAGAAATGAGCGTGCGGGCGCTCAGCCGGCTGAAGAGGCAGAATGCGCAAGCAGGGGA
*
21629360 TCGACCCAGTCCCCCCTACGTGCTGTAGATCCTGCTGCTGGTCCTGCTACCGCAACCCTCAGTCC
775 TCGACCCAGTCCCCCCTAC-TGCTGTAGATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCAGTCC
21629425 GGTCGAA
839 GGTCGAA
* *
21629432 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACTC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * * *
21629497 ACGAAATGAGTGTGCGGGCGCTCAGCTGGCCAGAGAGGCAGCATGCACAAGTCGGGAACCGGCCC
66 ACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGACCGACCC
* ** ** * * * *
21629562 AGTCCCCCATGCGTGCTGTCGATCCTACTGTCGTGACCCTCAGTCCGTTCCGATCTTAGATTGAG
131 AGTCCCCC-TGCGTGCTATCGATCCTACTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGG
* * * *
21629627 AATGAACCCCGTATGCCTAAGTCAATCGATGAAATGAGCGTGCGGGCGCTGAGCC-AGCTAGAGA
195 AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGA-CTAGAGA
* * * *
21629691 GGCATAATACGCAAGTCGGGGATCGGTCC-AATCCCTCTCTACGTGCTGTCGGTCCAGCTACCAC
259 GGCATAATACGCAAGTCGGGGATCGG-CCTAGTCCCCCTCTACGTGCTGCCGGTCCAGCTGCCAC
* * *
21629755 AACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATGAAA
323 AACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAA
* * * * * *
21629820 CGGGCGTGCGGGTGCTCAGTCGGCCGGAGAGGCAGAATACGTGAGCCGGGGATCGGCCCGGT-CC
388 CGGGCGTACGGGCGCTCAGCCGGTCGGAGAGGCAGAATACGTAAGCCGGGGATCGGTCCGGTACC
** * *
21629884 CCCTACGCAT-TACCGATCTTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGA
453 CCCTACGCATGTGTCGATCCTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGA
* * * * *
21629948 ACTCTGTATGCTTAGACTGGGGATGAACTCCGTATACCTAAGTCAACCCTCGAAATGAGCATGCA
518 ACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCA
21630013 GGCACTCA
583 GGCACTCA
21630021 ACCGACTAGG
Statistics
Matches: 1877, Mismatches: 321, Indels: 164
0.79 0.14 0.07
Matches are distributed among these distances:
820 42 0.02
821 2 0.00
824 4 0.00
825 6 0.00
826 2 0.00
827 1 0.00
828 6 0.00
829 2 0.00
831 1 0.00
832 6 0.00
833 282 0.15
834 95 0.05
835 128 0.07
836 41 0.02
837 72 0.04
838 1 0.00
840 2 0.00
841 2 0.00
842 1 0.00
844 1 0.00
845 33 0.02
846 72 0.04
847 348 0.19
848 170 0.09
849 7 0.00
853 1 0.00
854 4 0.00
856 2 0.00
857 3 0.00
858 2 0.00
859 1 0.00
860 1 0.00
865 78 0.04
866 40 0.02
867 290 0.15
868 83 0.04
869 1 0.00
870 1 0.00
871 1 0.00
874 2 0.00
876 3 0.00
877 1 0.00
880 1 0.00
881 35 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (845 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGACCGACCC
AGTCCCCCTGCGTGCTATCGATCCTACTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGACTAGAGAGG
CATAATACGCAAGTCGGGGATCGGCCTAGTCCCCCTCTACGTGCTGCCGGTCCAGCTGCCACAAC
CCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGG
GCGTACGGGCGCTCAGCCGGTCGGAGAGGCAGAATACGTAAGCCGGGGATCGGTCCGGTACCCCC
TACGCATGTGTCGATCCTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACT
CCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGC
ACTCAGCCGGTCGGAGAGGCATAATGCACAAGCCGGGGATCAGCCCGGTCCCTCTTTATCGGTCC
TGCTGCCGAACCTTCGGTCCAACTGGGGCTTAGACATGGAATAACTCTGTATGCCTAAGCCAACC
CAAGAAATGAGCGTGCGGGCGCTCAGCCGGCTGAAGAGGCAGAATGCGCAAGCAGGGGATCGACC
CAGTCCCCCCTACTGCTGTAGATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCAGTCCGGTCGAA
Found at i:21629961 original size:26 final size:26
Alignment explanation
Indices: 21629932--21629982 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21629922 CCGGTCTGAT
*
21629932 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21629958 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
21629983 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21630178 original size:26 final size:26
Alignment explanation
Indices: 21630141--21630193 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21630131 TCGGTCTGAT
*
21630141 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
21630167 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21630193 C
1 C
21630194 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21630401 original size:709 final size:709
Alignment explanation
Indices: 21629343--21630713 Score: 1788
Period size: 709 Copynumber: 1.9 Consensus size: 709
21629333 GAAGAGGCAC
* * * * *
21629343 AATGCGCAAGCTGGGGATCGACCCAGTCCCCCCTACGTGCTGTAGATCCTGCTGCTGGTCCTGCT
1 AATGCGCAAGCTAGGGATCGACCCAGTCCCCCCTACATGCTGCAGATCCTGCTGCTAGTCCTACT
21629408 ACCGCAACCCTCAGTCCGGTCGAACTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATG
66 ACCGCAACCCTCAGTCCGGTCGAACTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATG
* * * ** * * *
21629473 AACTCTGTATGCCTAAGCCAACTCACGAAATGAGTGTGCGGGCGCTCAGCTGGCCAGAGAGGCAG
131 AACTCTGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGCCGACCAGAGAGGCAA
* * * *
21629538 CATGCACAAGTCGGGAACCGGCCCAGTCCCCCATGCGTGCTGTCGATCCTACTGTCGTGACCCTC
196 AATGCACAAGCCGGGAACCAGCCCAGTCCCCCATGCGTGCTATCGATCCTACTGTCGTGACCCTC
* * * * * * *
21629603 AGTCCGTTCCGATCTTAGATTGAGAATGAACCCCGTATGCCTAAGTCAATCGATGAAATGAGCGT
261 AGTCCGGTCCGATCTTAGACTGAGAATGAACCCCGTATGCCTAACTCAACCCACGAAAGGAGCGT
* * * * * * * *
21629668 GCGGGCGCTGAGCCAGCTAGAGAGGCATAATACGCAAGTCGGGGATCGGTCCAATCCCTCTCTAC
326 GCGGGCACTAAGCCAGCCAGAGAGGCACAATACGCAAGCCGAGGATCGATCCAATCCCCCTCTAC
* *
21629733 GTGCTGTCGGT-CCAGCTACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCC
391 GTGCGGTCGGTCCCA-CTACCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCC
* * * * * *
21629797 TACGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGGCCGGAGAGGCAGAATACGT
455 TACGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACCGGAAAGGCAGAATACGC
* * * *
21629862 GAGCCGGGGATCGGCCCGGTCCC-CCTACGCAT-TA-CCGATCTTGCTGTCGCAACCCTCGGTCC
520 AAGCCGGGGATCGGCCCGGTCCCTCCT--GCATGCAGCCGATCCTACTGTCGCAACCCTCGGTCC
*
21629924 GGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATACCTAA
583 GGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATACCTAA
*
21629989 GTCAACCCTCGAAATGAGCATGCAGGCACTCAACCGACTAGGGAGGTCGGCCGGAGAGACAG
648 GTCAACCCACGAAATGAGCATGCAGGCACTCAACCGACTAGGGAGGTCGGCCGGAGAGACAG
* * * *
21630051 AATGCGCAAG-TCAGGGATCGGCCCTGTCCCCCCTGCATGCTGCCGATCCTGCTGCTAGTCCTAC
1 AATGCGCAAGCT-AGGGATCGACCCAGTCCCCCCTACATGCTGCAGATCCTGCTGCTAGTCCTAC
* * * * *
21630115 TACCGTAACCCTCGGTTCGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCTTAGACATGGAA
65 TACCGCAACCCTCAGTCCGGTC-GAACTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAA
* * *
21630180 TGAACTCTGTATGCCTAAGGCAACCCACAAAACGAGCATGCGGGTGCTCAGCCGACCGGAGAGGC
129 TGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGCCGACCAGAGAGGC
* * * * * *
21630245 AAAATGCGCAAGCCAGGG-ATCAGCTCGGTCCGCCC-TGTGTGCTATCGATCCTGCTG-C-TGCA
194 AAAATGCACAAGCC-GGGAACCAGCCCAGTCC-CCCATGCGTGCTATCGATCCTACTGTCGTG--
* * * *
21630306 ACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAACTCAACCCACGGAAG
255 ACCCTCAGTCCGGTCCGATCTTAGACTGAGAATGAACCCCGTATGCCTAACTCAACCCACGAAAG
* * * * * **
21630371 GAGCGTTCGGGTATTAAGCCGGCCAGAGAGGCACAATGCGCAAGCCGAGGATCGATCCGTTCCCC
320 GAGCGTGCGGGCACTAAGCCAGCCAGAGAGGCACAATACGCAAGCCGAGGATCGATCCAATCCCC
21630436 CTCTACGTGCGGTCGGTCCCCACTACCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGA
385 CTCTACGTGCGGTCGGT-CCCACTACCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGA
* * * *
21630501 ACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCGCTCAGCCGACCGGAAAGGTAGA
449 ACTCCCTACGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACCGGAAAGGCAGA
* ** ** *
21630566 ATGCGCAAGTTGGGGATCGGCTTGGTCCCTCCTGCATGCAGCCGATCCTATTGTCGCAACCCTCG
514 ATACGCAAGCCGGGGATCGGCCCGGTCCCTCCTGCATGCAGCCGATCCTACTGTCGCAACCCTCG
* ** *
21630631 GTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTGGACTGGGGATGAACTTTGTATGC
579 GTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATAC
21630696 CTAAGTCAACCCACGAAA
644 CTAAGTCAACCCACGAAA
21630714 CGAGTGTATG
Statistics
Matches: 563, Mismatches: 89, Indels: 19
0.84 0.13 0.03
Matches are distributed among these distances:
707 3 0.01
708 73 0.13
709 256 0.45
710 127 0.23
711 104 0.18
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (709 bp):
AATGCGCAAGCTAGGGATCGACCCAGTCCCCCCTACATGCTGCAGATCCTGCTGCTAGTCCTACT
ACCGCAACCCTCAGTCCGGTCGAACTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATG
AACTCTGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGCCGACCAGAGAGGCAA
AATGCACAAGCCGGGAACCAGCCCAGTCCCCCATGCGTGCTATCGATCCTACTGTCGTGACCCTC
AGTCCGGTCCGATCTTAGACTGAGAATGAACCCCGTATGCCTAACTCAACCCACGAAAGGAGCGT
GCGGGCACTAAGCCAGCCAGAGAGGCACAATACGCAAGCCGAGGATCGATCCAATCCCCCTCTAC
GTGCGGTCGGTCCCACTACCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCT
ACGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACCGGAAAGGCAGAATACGCA
AGCCGGGGATCGGCCCGGTCCCTCCTGCATGCAGCCGATCCTACTGTCGCAACCCTCGGTCCGGT
CCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATACCTAAGTC
AACCCACGAAATGAGCATGCAGGCACTCAACCGACTAGGGAGGTCGGCCGGAGAGACAG
Found at i:21630669 original size:158 final size:154
Alignment explanation
Indices: 21630167--21630669 Score: 429
Period size: 158 Copynumber: 3.2 Consensus size: 154
21630157 ACTCCGTATG
* * * *
21630167 CTTAGACATGGAATGAACTCTGTATGCCTAAGGCAACCCACAAAACGAGCATGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAA-GGGCGTGCGGGTGCTCAGC
* *
21630232 CGACCGGAGAGGCAAAATGCGCAAGCCAGGGATCAGCTCGGTCCGCCCTGTGTGCTA-TCGATCC
65 CGACCGGAGAGGCAAAATGCGCAAGCCGGGGATC-GCTCGGTCC-CCCTGCGTGC-AGTCGATCC
* *
21630296 TGCTGCTGCAACCCTCAGTCCGGTCCGAT
127 TACTGC-GCAACCCTCGGTCCGGTCCGAT
* * ** *
21630325 CTTAGAC-TGGGAATGAACTCTGTATGCCTAA-CTCAACCCACGGAAGGAGCGTTCGGGTATTAA
1 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGC-CAACCCACGAAAGG-GCGTGCGGGTGCTCA
* * * * * * * * *
21630388 GCCGGCCAGAGAGGCACAATGCGCAAGCCGAGGATCGATCCGTTCCCCCTCTACGTGCGGTCGGT
63 GCCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGCT-CGGT-CCCC-CTGCGTGCAGTCGAT
* * * * ** **
21630453 CCCCACTACCACAACCCTCGGTCCGATTGGGG
125 -CCTACT-GCGCAACCCTCGGTCCGGTCCGAT
** * *
21630485 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAA-GGGCGTGCGGGTGCTCAGC
* * * ** * * *
21630550 CGACCGGAAAGGTAGAATGCGCAAGTTGGGGATCGGCTTGGTCCCTCCTGCATGCAGCCGATCCT
65 CGACCGGAGAGGCAAAATGCGCAAGCCGGGGATC-GCTCGGTCCC-CCTGCGTGCAGTCGATCCT
*
21630615 ATTGTCGCAACCCTCGGTCCGGTCCGAT
128 ACTG-CGCAACCCTCGGTCCGGTCCGAT
21630643 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCTGTATGC
21630670 TTGGACTGGG
Statistics
Matches: 263, Mismatches: 66, Indels: 32
0.73 0.18 0.09
Matches are distributed among these distances:
157 5 0.02
158 129 0.49
159 25 0.10
160 97 0.37
161 7 0.03
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (154 bp):
CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAAGGGCGTGCGGGTGCTCAGCC
GACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGCTCGGTCCCCCTGCGTGCAGTCGATCCTACT
GCGCAACCCTCGGTCCGGTCCGAT
Found at i:21631061 original size:26 final size:26
Alignment explanation
Indices: 21631023--21631075 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21631013 CTGGTCCGAT
*
21631023 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21631049 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21631075 C
1 C
21631076 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.