Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 208 of 402
Found at i:21631575 original size:26 final size:26
Alignment explanation
Indices: 21631524--21631576 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21631514 TCGGTCTGAT
*
21631524 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21631550 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21631576 C
1 C
21631577 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21632589 original size:26 final size:26
Alignment explanation
Indices: 21632539--21632591 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21632529 CCGGTTCGAT
**
21632539 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
21632565 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21632591 C
1 C
21632592 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21632772 original size:26 final size:26
Alignment explanation
Indices: 21632734--21632786 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
21632724 CCGATCAGAT
*
21632734 CTTAGACTAGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATAAACTCT-GTATG
21632760 CTTAGAC-ATGGAATAAACTCTGTATG
1 CTTAGACTA-GGAATAAACTCTGTATG
21632786 C
1 C
21632787 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 22 0.92
27 1 0.04
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCTGTATG
Found at i:21634031 original size:159 final size:156
Alignment explanation
Indices: 21633643--21634140 Score: 495
Period size: 159 Copynumber: 3.1 Consensus size: 156
21633633 CAGTATGCTT
* *
21633643 AGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGG
1 AGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGC
* *
21633708 CAGGAGAGGCAGAATGC-CTAAGTCGGGG-TCAGACCCGATCCCCCTGCATGCTATCGATCCTGC
65 CA-GAGAGGCAGAATGCGC-AAGTCGGGGATC-GACCCGATCCCCCTGCGTGCTGTCGATCCTGC
* *
21633771 TGCCGCAACCCTCGGTCC-GATCCGATCTT
127 TGCCGCAACCCTCGGTCCGGATCCGAGCTC
* * * * * * *
21633800 AGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTGAACCGG
1 AGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-G
* * * * *
21633865 TCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGTTCCCCCTCTGCGTGCTGCCCG-TCCTG
64 CCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGAT-CCCC-CTGCGTGCTG-TCGATCCTG
* * * *
21633929 CTGCCACAACCCTCGGTCCGGCT-GGGGCTC
126 CTGCCGCAACCCTCGGTCCGGATCCGAGCTC
* * * ** *
21633959 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCACGCGGGTGCTCAGCCAG
1 AGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-G
* * * * * *
21634024 CCAGAGAGGCAGAATGTGCAAGCCAGGTATCGGCCCGGTACCCCCTGCGTGCTGTCGATCCTGCT
64 CCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGAT-CCCCCTGCGTGCTGTCGATCCTGCT
* * *
21634089 GCCGCAACCCTCGGTCCGG-TTCGATCTT
128 GCCGCAACCCTCGGTCCGGATCCGAGCTC
*
21634117 AGACTAGGAATGAACTCCATATGC
1 AGACT-GGAATGAACTCCGTATGC
21634141 TTAGACTATG
Statistics
Matches: 277, Mismatches: 52, Indels: 23
0.79 0.15 0.07
Matches are distributed among these distances:
156 1 0.00
157 86 0.31
158 68 0.25
159 117 0.42
160 5 0.02
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (156 bp):
AGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGCC
AGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCTGCGTGCTGTCGATCCTGCTGCC
GCAACCCTCGGTCCGGATCCGAGCTC
Found at i:21634100 original size:879 final size:879
Alignment explanation
Indices: 21632577--21634203 Score: 2253
Period size: 879 Copynumber: 1.9 Consensus size: 879
21632567 TAGACTGGGG
* *
21632577 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAGCGGAGAGGC
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGCCAGCGGAGAGGC
* * *
21632642 AAAATGCGCAAGCCGGGGGTCGGCCCGATCCCTCCTGCATGCTGTCGGTCCTGCTGCTGGTCCTG
66 AAAATGCGCAAGCCGAGGGTCGGCCCGATCCCTCCTGCATGCTGTCGATCCTGCTACTGGTCCTG
* * *
21632707 CTGCCGTAACCCTCGATCCGATCAGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACATGGA
131 CTACCGCAACCCTCGATCCGATCAGATCTTACACTAGGAATGAACTTCGTATGCTTAGACATGGA
* * * *
21632772 ATAAACTCTGTATGCCTAAGCCAACCAATGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGG
196 ATAAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCAGGAGAGG
* * * * *
21632837 CAGAATGCACAAGTCGGAGACCGGCTCGATGCCCCCTGCGTGCTGTCGATCCTGCTACCACAACC
261 CAGAATGCACAAGTCGGAGACAGACCCGATGCCCCCTGCATGCTATCGATCCTGCTACCACAACC
* * *
21632902 CTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGAG
326 CTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGAG
* * * * * *
21632967 CGTTCAGACGCTGAGCCGGCCGGAGAGGCATAATGTGCAAGCCGGGGATCGACCTGGTCCCTCTC
391 CGTACAGACACTGAACCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTC
* * * * * *
21633032 TACGTGTTGTCGGTCCCGCTGCCAAAACCCTCAGTCTAGCTGGGGCTTAGACATGGAGTGAACTC
456 TACGTGCTGCCCGTCCCGCTGCCAAAACCCTCAGTCCAGCTGGGGCTCAGACATGGAATGAACTC
***
21633097 CCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAGCCAGCCGAAGAGGCAAAATGC
521 CCTATGCCTAAGCCAACCCATGAAACGGGCACGCGGGTGCTCAGCCAGCCGAAGAGGCAAAATGC
* * * * **
21633162 GTAAACCGGGGATCAGCCCAGTCCCCCCTACGTGCTGTCGATCCTGCTACTGCAACCCTCGGTTT
586 GCAAACCAGGGATCAGCCCAGTACCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCC
* * ** *
21633227 GGTTCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTATGGATGAAGACTGTATGCCTAA
651 GGTTCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTATGGATGAACACTGTATGCCTAA
* *
21633292 GTCAACCCACGAAACGAGGGTACGGGTGCTCAGCCGGCCGAAGAGTCGGTTGAAAAGGCATAATG
716 GTCAACCCACGAAACGAGCGTACGGATGCTCAGCCGGCCGAAGAGTCGGTTGAAAAGGCATAATG
21633357 TGTAATCCGAGGATCAGCTCGATCCCCTTCTGCGTATTATCGATCCTACTGCCAGTCCTGCTGCC
781 TGTAATCCGAGGATCAGCTCGATCCCCTTCTGCGTATTATCGATCCTACTGCCAGTCCTGCTGCC
21633422 ACAACCCCCGATTCGGCTGGGGTTTAGACATGGA
846 ACAACCCCCGATTCGGCTGGGGTTTAGACATGGA
* * * *
21633456 ATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGTCGATCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAG-CCAGCGGAGAGG
* * * * * * * *
21633521 TAGAATGCGTAAGTCGAGGTTCGGCCCGGT-CCTCTCTGCGTGCTGTCGATCCTGCTACTGGTTC
65 CAAAATGCGCAAGCCGAGGGTCGGCCCGATCCCTC-CTGCATGCTGTCGATCCTGCTACTGGTCC
* * *
21633585 TGCTACCGCAACCCTC-AGTCTGGTCGGATCTTACACT-GAGAATGAAC-TCAGTATGCTTAGAC
129 TGCTACCGCAACCCTCGA-TCCGATCAGATCTTACACTAG-GAATGAACTTC-GTATGCTTAGAC
* * * *
21633647 TTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGGCAGG
191 ATGGAATAAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCAGG
* * *
21633712 AGAGGCAGAATGC-CTAAGTCGGGGTCAGACCCGAT-CCCCCTGCATGCTATCGATCCTGCTGCC
256 AGAGGCAGAATGCAC-AAGTCGGAGACAGACCCGATGCCCCCTGCATGCTATCGATCCTGCTACC
* *
21633775 GCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAAC-TCTGTATGCCTAAGTCAACCCACG
320 ACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTC-ATATGCCTAAGTCAACCCACG
* * * * * *
21633839 AAATGAGCGTACGGGCACTGAACCGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGTT
384 AAACGAGCGTACAGACACTGAACCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGT
* * * * *
21633904 CCCCCTCTGCGTGCTGCCCGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTCAGACATGGAA
449 CCCCCTCTACGTGCTGCCCGTCCCGCTGCCAAAACCCTCAGTCCAGCTGGGGCTCAGACATGGAA
21633969 TGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCACGCGGGTGCTCAGCCAGCC-AGAGAGG
514 TGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCACGCGGGTGCTCAGCCAGCCGA-AGAGG
* * * * * * * *
21634033 CAGAATGTGCAAGCCAGGTATCGGCCCGGTACCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACC
578 CAAAATGCGCAAACCAGGGATCAGCCCAGTACCCCCTACGTGCTGTCGATCCTGCTACCGCAACC
**
21634098 CTCGGTCCGGTTCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTATGGATGAACTTTGT
643 CTCGGTCCGGTTCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTATGGATGAACACTGT
* * * *
21634163 ATGCCTAAGTTAACCCATGAAATGAGCGTGCGGATGCTCAG
708 ATGCCTAAGTCAACCCACGAAACGAGCGTACGGATGCTCAG
21634204 TCGACCAGAG
Statistics
Matches: 643, Mismatches: 97, Indels: 16
0.85 0.13 0.02
Matches are distributed among these distances:
878 3 0.00
879 448 0.70
880 192 0.30
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (879 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGCCAGCGGAGAGGC
AAAATGCGCAAGCCGAGGGTCGGCCCGATCCCTCCTGCATGCTGTCGATCCTGCTACTGGTCCTG
CTACCGCAACCCTCGATCCGATCAGATCTTACACTAGGAATGAACTTCGTATGCTTAGACATGGA
ATAAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCAGGAGAGG
CAGAATGCACAAGTCGGAGACAGACCCGATGCCCCCTGCATGCTATCGATCCTGCTACCACAACC
CTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGAG
CGTACAGACACTGAACCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTC
TACGTGCTGCCCGTCCCGCTGCCAAAACCCTCAGTCCAGCTGGGGCTCAGACATGGAATGAACTC
CCTATGCCTAAGCCAACCCATGAAACGGGCACGCGGGTGCTCAGCCAGCCGAAGAGGCAAAATGC
GCAAACCAGGGATCAGCCCAGTACCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCC
GGTTCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTATGGATGAACACTGTATGCCTAA
GTCAACCCACGAAACGAGCGTACGGATGCTCAGCCGGCCGAAGAGTCGGTTGAAAAGGCATAATG
TGTAATCCGAGGATCAGCTCGATCCCCTTCTGCGTATTATCGATCCTACTGCCAGTCCTGCTGCC
ACAACCCCCGATTCGGCTGGGGTTTAGACATGGA
Found at i:21634732 original size:25 final size:24
Alignment explanation
Indices: 21634698--21634751 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 24
21634688 ATGTCCGTAC
* *
21634698 ACCCCCCGACCCCCCAATCGCCGGA
1 ACCCCCCGACCCCAC-ATCACCGGA
21634723 ACCCCCCGACCCCACATCACCGGA
1 ACCCCCCGACCCCACATCACCGGA
21634747 ACCCC
1 ACCCC
21634752 TAATGCCGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 13 0.48
25 14 0.52
ACGTcount: A:0.22, C:0.61, G:0.13, T:0.04
Consensus pattern (24 bp):
ACCCCCCGACCCCACATCACCGGA
Found at i:21634735 original size:24 final size:25
Alignment explanation
Indices: 21634698--21634751 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 25
21634688 ATGTCCGTAC
*
21634698 ACCCCCCGACCCCC-CAATCGCCGGA
1 ACCCCCCGACCCCCAC-ATCACCGGA
21634723 ACCCCCCGA-CCCCACATCACCGGA
1 ACCCCCCGACCCCCACATCACCGGA
21634747 ACCCC
1 ACCCC
21634752 TAATGCCGCC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 17 0.63
25 10 0.37
ACGTcount: A:0.22, C:0.61, G:0.13, T:0.04
Consensus pattern (25 bp):
ACCCCCCGACCCCCACATCACCGGA
Found at i:21634899 original size:26 final size:26
Alignment explanation
Indices: 21634861--21634913 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21634851 GGCTCAAACT
*
21634861 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21634887 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21634913 C
1 C
21634914 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21635240 original size:26 final size:26
Alignment explanation
Indices: 21635204--21635256 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21635194 CCAGTTCAAT
21635204 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
21635230 CTTAGACTGGGGTTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21635256 C
1 C
21635257 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21635451 original size:26 final size:26
Alignment explanation
Indices: 21635413--21635465 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21635403 CCAGTCTGAT
21635413 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21635439 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21635465 C
1 C
21635466 CTAAGCCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21635649 original size:196 final size:196
Alignment explanation
Indices: 21635407--21635759 Score: 526
Period size: 196 Copynumber: 1.8 Consensus size: 196
21635397 CTCAGTCCAG
*
21635407 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
1 TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * * * * *
21635472 CAAGCCACAAAATGAGCGTGCGGGCGTTCAGCCGACTGAAGAGGCAGAATTCGCAAGCCGGGGAC
66 CAACCCACAAAACGAGCATACGGGCGCTCAGCCGACTGAAGAGGCAGAATGCGCAAGCCGGGGAC
21635537 CGACCCAGTCCCCCTTGCATGCTGTCGGTCCTGCTGCTGGTCCTGCTGCCACAACCCTTGGTCCG
131 CGACCCAGTCCCCCTTGCATGCTGTCGGTCCTGCTGCTGGTCCTGCTGCCACAACCCTTGGTCCG
21635602 A
196 A
*
21635603 TCTGATCTTAGATTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
1 TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * * * * * **
21635668 CAACCCACGAAACGAGCATACGGGCGCTCAGTCGGCTGGAGAGGCAGAATGCGTAAGTCGGGGTT
66 CAACCCACAAAACGAGCATACGGGCGCTCAGCCGACTGAAGAGGCAGAATGCGCAAGCCGGGGAC
* * **
21635733 CGGCCCGGTCCCCCTTGTGTGCTGTCG
131 CGACCCAGTCCCCCTTGCATGCTGTCG
21635760 ATCTAGCTAT
Statistics
Matches: 137, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
196 137 1.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (196 bp):
TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCACAAAACGAGCATACGGGCGCTCAGCCGACTGAAGAGGCAGAATGCGCAAGCCGGGGAC
CGACCCAGTCCCCCTTGCATGCTGTCGGTCCTGCTGCTGGTCCTGCTGCCACAACCCTTGGTCCG
A
Found at i:21635894 original size:158 final size:159
Alignment explanation
Indices: 21635635--21635921 Score: 382
Period size: 158 Copynumber: 1.8 Consensus size: 159
21635625 ACTCCATATG
* * * *
21635635 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAACGAGCATACGGGCACTAAGT
* * ** * * *
21635700 CGGCTGGAGAGGCAGAATGCGTAAGTCGGGGTTCGGCCCGGTCCCCCT-TGTGTGCTGTCGATCT
66 CGACCGGAGAGGCAGAATGCCCAAGCCAGGGATCGGCCCGGTCCCCCTCTGTGTGCTGTCGATCT
21635764 AGCTATTGCAACCCTCGGTCCGGTCTAAT
131 AGCTATTGCAACCCTCGGTCCGGTCTAAT
* * * *
21635793 CTTAGAC-TAGGAATGAACTCCATATACGTAAGTCAACCCACGAAACGAGCGTTCGGGCACTAAG
1 CTTAGACAT-GGAATGAACTCCATATACCTAAGCCAACCCACGAAACGAGCATACGGGCACTAAG
* *
21635857 -CTGACCGGAGAGGCATAATGCCCAAGCCAGGGATCGGCTCGGTCCCCCTCTGTGTGCTGTCGAT
65 TC-GACCGGAGAGGCAGAATGCCCAAGCCAGGGATCGGCCCGGTCCCCCTCTGTGTGCTGTCGAT
21635921 C
129 C
21635922 CCGCTGCCAC
Statistics
Matches: 109, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
157 2 0.02
158 92 0.84
159 15 0.14
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAACGAGCATACGGGCACTAAGT
CGACCGGAGAGGCAGAATGCCCAAGCCAGGGATCGGCCCGGTCCCCCTCTGTGTGCTGTCGATCT
AGCTATTGCAACCCTCGGTCCGGTCTAAT
Found at i:21636139 original size:26 final size:26
Alignment explanation
Indices: 21636110--21636162 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21636100 CCGGTCCGAT
*
21636110 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21636136 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21636162 C
1 C
21636163 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21637060 original size:158 final size:156
Alignment explanation
Indices: 21636525--21637092 Score: 505
Period size: 159 Copynumber: 3.6 Consensus size: 156
21636515 GCTTAGATAT
* * * * * ** * ** *
21636525 GGAATGAACTTCGTACGCCTAAGCCAACCAATGAAATGAGCGTACGGGCACTGAGCCGGTCAAAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGACCGAAG
* * * *
21636590 AGGCAGAATGCACAAGCCGGGGACCGACCCGGTCTGCCCCTGCATGCTATCGATCCTGCTACCGC
66 AGGCAGAATGCACAAGCCGGGGATCGACCCGATC-CCCCCTG-TTGCTATCGATCCTGCTACCGC
* *
21636655 AACCCTCGGTCCGGTCCGGTCTTACACTG
129 AACCCTCGGTCC-GTCTGGTCTTAGACTG
* * * * * * *
21636684 GGAATGAACTCCGTATGCCTAAATCAACCCACGAAATGAGCGTGCGGGTTCTGAGCCGGCTGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGACCGAAG
* * * * * * * * * *
21636749 AGCCATAATGCACAAGTCGGGGATCGACCCAATCCCCTTCTGCTTGTTGTCGGT-CTCGCTGCCA
66 AGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCC-CCTG-TTGCTATCGATCCT-GCTACCG
* * * *
21636813 CAACCCTCAGTCCGACTGGGGCTTAGCCAT-
128 CAACCCTCGGTCCGTCT-GGTCTTAGAC-TG
* * *
21636843 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATCG-GCGTGCGGGTGCTTAGCCGACCGAA
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAT-GAGCGTGCGGGTGCTCAGCCGACCGAA
* * * * *
21636907 GAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGTGTGCTATCGATCCTACTACTGC
65 GAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGT-TGCTATCGATCCTGCTACCGC
*
21636972 AACCCTCGGTCCAGTCTGATCTTAGACTG
129 AACCCTCGGTCC-GTCTGGTCTTAGACTG
* * * * *
21637001 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAGTGAGTGTGCGGATGCCCAACCGACC-AGA
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGACCGA-A
* * *
21637065 GGGGCGGGATGCACAAGCCGGGGATCGA
65 GAGGCAGAATGCACAAGCCGGGGATCGA
21637093 ACGGGTGGTA
Statistics
Matches: 322, Mismatches: 76, Indels: 23
0.76 0.18 0.05
Matches are distributed among these distances:
157 4 0.01
158 112 0.35
159 204 0.63
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGACCGAAG
AGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGTTGCTATCGATCCTGCTACCGCAA
CCCTCGGTCCGTCTGGTCTTAGACTG
Found at i:21637569 original size:26 final size:26
Alignment explanation
Indices: 21637531--21637583 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21637521 GGCTCAAACT
21637531 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
21637557 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
21637583 C
1 C
21637584 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:21637903 original size:26 final size:26
Alignment explanation
Indices: 21637874--21637924 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21637864 CCGATTCGAT
21637874 CTTAGACTT-GGAATGAACTCCGTATA
1 CTTAGA-TTGGGAATGAACTCCGTATA
*
21637900 CTTAGATTGGGGATGAACTCCGTAT
1 CTTAGATTGGGAATGAACTCCGTAT
21637925 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATA
Found at i:21638134 original size:26 final size:26
Alignment explanation
Indices: 21638083--21638135 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21638073 CCGGTCAGAT
** *
21638083 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACAAGGAATGAACTCCATATG
*
21638109 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
21638135 C
1 C
21638136 CTATGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:21638974 original size:26 final size:25
Alignment explanation
Indices: 21638924--21638975 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
21638914 CTGGTCCGAT
* *
21638924 CTTAGACTGGGAATGAGCTCGTATG
1 CTTAGACTGGGAATGAACTCATATG
*
21638949 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACT-CATATG
21638975 C
1 C
21638976 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCATATG
Found at i:21643384 original size:158 final size:157
Alignment explanation
Indices: 21643129--21643630 Score: 485
Period size: 158 Copynumber: 3.2 Consensus size: 157
21643119 ACTCCATATG
*
21643129 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCGTGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * ** *
21643194 TGGCCGAAGAGGTAGAATGTGCAAGTTAGGGATCGACCTGATCCCCCCTGCGTGCTATCGATCCT
66 TGGCCGAAGAGGTAGAATGCGTAAGTCGGGGATCG-CCTGATCCCCCCTGCGTGCTACCGATCCT
* *
21643259 GCTGCCGTAACCCTCGGTCTGGTCTGAT
130 GCTACCGCAACCCTCGGTCTGGTCTGAT
* * * * ** *
21643287 CTTAGAC-TGGGAAAGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCATGTAGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * *
21643351 CTGGCCGAAGAGGCATAATGCGTAAGTCGGGGATCGGCTCGATCCCCTTCTGCGTGCT-GCTAGT
65 CTGGCCGAAGAGGTAGAATGCGTAAGTCGGGGATCGCCT-GATCCCC-CCTGCGTGCTACCGA-T
* * * * **
21643415 CTTGCTACCACAACCCTCGGT-TCGACTGGGG
127 CCTGCTACCGCAACCCTCGGTCTGGTCT-GAT
* * * *
21643446 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAATG-GACGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGCACTCAG
** * * * * * *
21643510 CCAGTC-AGAGAGGTAGAATGCATAAGCCGGGGATCGGCCTGGTCCCTCCTGCATGCTACCGATC
65 CTGGCCGA-AGAGGTAGAATGCGTAAGTCGGGGATC-GCCTGATCCCCCCTGCGTGCTACCGATC
** * *
21643574 CTGCTACCGCAACCCTCGACCTGATCCGAT
128 CTGCTACCGCAACCCTCGGTCTGGTCTGAT
21643604 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
21643631 TTAGACTGGA
Statistics
Matches: 270, Mismatches: 62, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 4 0.01
158 150 0.56
159 112 0.41
160 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
TGGCCGAAGAGGTAGAATGCGTAAGTCGGGGATCGCCTGATCCCCCCTGCGTGCTACCGATCCTG
CTACCGCAACCCTCGGTCTGGTCTGAT
Found at i:21643633 original size:26 final size:25
Alignment explanation
Indices: 21643598--21643655 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 25
21643588 CTCGACCTGA
21643598 TCCGAT-CTTAGACTGGGA-ATGAAC
1 TCCGATGCTTAGACT-GGATATGAAC
21643622 TCCGTATGCTTAGACTGGATATGAAC
1 TCCG-ATGCTTAGACTGGATATGAAC
21643648 TCCGATGC
1 TCCGATGC
21643656 CTATGTCAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
24 4 0.13
25 9 0.29
26 18 0.58
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (25 bp):
TCCGATGCTTAGACTGGATATGAAC
Found at i:21643842 original size:26 final size:26
Alignment explanation
Indices: 21643813--21643865 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21643803 CCGGTCCGAT
21643813 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
21643839 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21643865 C
1 C
21643866 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21644172 original size:709 final size:710
Alignment explanation
Indices: 21643070--21644376 Score: 1800
Period size: 709 Copynumber: 1.8 Consensus size: 710
21643060 CCTGCTACTG
* *
21643070 GTCCTGCTACCACAACCCTCGATCCGATCTGATCTTAGATTGGGAATGAACTCCATATGCTTAGA
1 GTCCTGCTACCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
** * * * *
21643135 CATGGAATGAACTCCGTATGCCTAAGCCAACCCGTGAAACGAGCGTGCGGGCACTCAGCTGGCCG
66 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAACCGGCCG
** * * *
21643200 AAGAGGTAGAATGTGCAAGTTAGGGATCGACCTGATCCCCCCTGCGTGCTATCGATCCTGCTGCC
131 AAGAGGTAGAATGCACAAGTCAAGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTGCTGCC
* * * * *
21643265 GTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAAGAACTCCGTATGCATAAGTCAACCCATGA
196 GCAACCCTCAGTCCGGTCGGATCTTAGACTGGGAAAGAACACCGTATGCATAAGTCAACCCATGA
* * * * *
21643330 AACGAGCATGTAGGCACTGAGCTGGCCGAAGAGGCATAATGCGTAAGTCGGGGATCGGCTCGATC
261 AACGAGCATGCAGGCACTGAGCCGGCCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGATC
* * ** * * * **
21643395 CCCTTCTGCGTGCTGCTAGTCTTGCTACCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAAT
326 CCCCTCTGCGTGCTGCCAGTCCCGCTACCACAACCCTCGGTCCAACTAGGAATTAGACATGGAAT
* * * *
21643460 GAACTCCCTATGCCTAAGCCAACCAATGAAATGGACGTGCGGGCGCTCAGCC-AGTCAGAGAGGT
391 GAACTCCCTATGCCTAAGCCAACCAACGAAATGGACGTACGGGCGCTCAGCCGA-CCAGAGAGGC
* * * *
21643524 AGAATGCATAAGCCGGGGATC-GGCCTGGTCCCTCCTGCATGCTACCGATCCTGCTACCGCAACC
455 AGAATGCACAAGCCGGGGATCAGGCC-GATCCCCCCTGCATGCTACCGATCCTACTACCGCAACC
* * *
21643588 CTCGA-CCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGATATGAACTCCG
519 CTCGATCCAG-TCCGATCTTAGACTGGGAATGAACT-CATATGCTTAGACTGGAGATGAACTCCG
* *
21643652 -ATGCCTATGTCAACCCTTGAAACAAGCGTGCGGGCACTCAGCCAGTCGGAGAGGTCGACCGGAG
582 TATCCCTAAGTCAACCCTTGAAACAAGCGTGCGGGCACTCAGCCAGTCGGAGAGGTCGACCGGAG
21643716 AGGCATAATGCGTAAGCCAGGGATCAGCTCGATCCCCTTCTACGTGCTACCGATCTCGCTATCA
647 AGGCATAATGCGTAAGCCAGGGATCAGCTCGATCCCCTTCTACGTGCTACCGATCTCGCTATCA
* * * * *
21643780 GTCCTGCTGCTACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
1 GTCCTGCTACCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
*
21643845 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAACCGGCCG
66 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAACCGGCCG
* * * * *
21643910 GAGAGGTAGAATGCACAAGTCAAGGATTGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGTTGCC
131 AAGAGGTAGAATGCACAAGTCAAGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTGCTGCC
* *
21643975 GCAACCCTCAGTCCGGT-GGATCTTAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCATGA
196 GCAACCCTCAGTCCGGTCGGATCTTAGACTGGGAAAGAACACCGTATGCATAAGTCAACCCATGA
* * ** * *
21644039 AATGAG-AGTGCGGGTGCTGAGCCGGTCGGAA-AGGCATAATGCGCAAGTCGGGGATCGACCCGG
261 AACGAGCA-TGCAGGCACTGAGCCGG-CCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGA
21644102 TCCCCCTCTGCGTGCTGCCAGTCCCGCTACCACAACCCTCGGTCCAACTAGGAATTAGACATGGA
324 TCCCCCTCTGCGTGCTGCCAGTCCCGCTACCACAACCCTCGGTCCAACTAGGAATTAGACATGGA
** * * *
21644167 ATGAACTCCCTATGCCTAAGCCAACCCCCGAAATGGGCGTACGGGCGCTCAGTCGACCGGAGAGG
389 ATGAACTCCCTATGCCTAAGCCAACCAACGAAATGGACGTACGGGCGCTCAGCCGACCAGAGAGG
* * * * * * *
21644232 CAGAATGCGCAAGCCGGGGATCAGTCCGATCCCCCCTGCATGTTGCCGATCCTACTGCTGTAACC
454 CAGAATGCACAAGCCGGGGATCAGGCCGATCCCCCCTGCATGCTACCGATCCTACTACCGCAACC
* * *
21644297 CTCGATCCAGTCCGATCTTAGACTGGTAATGAACTCATATGCTTAGATTGGGGATGAACTCCGTA
519 CTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCATATGCTTAGACTGGAGATGAACTCCGTA
21644362 TCCCTAAGTCAACCC
584 TCCCTAAGTCAACCC
21644377 ACGAAACGAG
Statistics
Matches: 512, Mismatches: 79, Indels: 13
0.85 0.13 0.02
Matches are distributed among these distances:
708 25 0.05
709 291 0.57
710 196 0.38
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (710 bp):
GTCCTGCTACCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAACCGGCCG
AAGAGGTAGAATGCACAAGTCAAGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTGCTGCC
GCAACCCTCAGTCCGGTCGGATCTTAGACTGGGAAAGAACACCGTATGCATAAGTCAACCCATGA
AACGAGCATGCAGGCACTGAGCCGGCCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGATC
CCCCTCTGCGTGCTGCCAGTCCCGCTACCACAACCCTCGGTCCAACTAGGAATTAGACATGGAAT
GAACTCCCTATGCCTAAGCCAACCAACGAAATGGACGTACGGGCGCTCAGCCGACCAGAGAGGCA
GAATGCACAAGCCGGGGATCAGGCCGATCCCCCCTGCATGCTACCGATCCTACTACCGCAACCCT
CGATCCAGTCCGATCTTAGACTGGGAATGAACTCATATGCTTAGACTGGAGATGAACTCCGTATC
CCTAAGTCAACCCTTGAAACAAGCGTGCGGGCACTCAGCCAGTCGGAGAGGTCGACCGGAGAGGC
ATAATGCGTAAGCCAGGGATCAGCTCGATCCCCTTCTACGTGCTACCGATCTCGCTATCA
Found at i:21644185 original size:159 final size:157
Alignment explanation
Indices: 21643840--21644283 Score: 464
Period size: 159 Copynumber: 2.8 Consensus size: 157
21643830 CTCCGTATGC
* * *
21643840 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCC
* * ** * * * *
21643905 GGCCGGAGAGGTAGAATGCACAAGTCAAGGATTGGCCCGATCCCCCCTGCGTGCTGTCGATCCTG
66 GGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCCG
* * * ** *
21643970 TTGCCGCAACCCTCAGTCCGGTGGATC
131 CTACCACAACCCTCAGTCCACTGGATA
* * * * * * *
21643997 TTAGAC-TGGGAATGAACACCGTATGCCTAAGTCAACCCATGAAATGAGAGTGCGGGTGCTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
* * * *
21644061 CGGTCGGAAAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCC-AGTC
65 CGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCC-CTGCGTGCTGCCGA-TC
*
21644125 CCGCTACCACAACCCTCGGTCCAACTAGGA-A
128 CCGCTACCACAACCCTCAGTCC-ACT-GGATA
* * * *
21644156 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCCCGAAATGGGCGTACGGGCGCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCC
* * * * *
21644221 GACCGGAGAGGCAGAATGCGCAAGCCGGGGATC-AGTCCGATCCCCCCTGCATGTTGCCGATCC
66 GGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGA-CCCGATCCCCCCTGCGTGCTGCCGATCC
21644284 TACTGCTGTA
Statistics
Matches: 230, Mismatches: 49, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
156 1 0.00
157 90 0.39
158 44 0.19
159 91 0.40
160 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (157 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCC
GGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCCG
CTACCACAACCCTCAGTCCACTGGATA
Found at i:21645457 original size:159 final size:158
Alignment explanation
Indices: 21645032--21645477 Score: 467
Period size: 159 Copynumber: 2.8 Consensus size: 158
21645022 AACTCCGTAT
* *
21645032 GCTTAGACATGGAATGAACTTTGTATGCCTAAGAAAACCCACGAAACGAGCGTGCGGCGC-C-CA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGACAACCCACGAAACGAGCGTGCGG-GCACTCA
* * * *
21645095 GCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGACCTGGTCCCCCTGC--GT-CTTGTCGA
65 GCCAACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCT-CTAGTGC-TGTCGA
* * * *
21645157 TCCTGCTGCCACAACCCTCAGTCCGGTTTGA
128 TCCTACTGCCAAAACCCTCAGTCCGGCTGGA
* * * * * *
21645188 TCTTAGAC-TGGGTATGAACTCTGTATACCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTAA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGACAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * * *
21645252 GCCGACCGAAGAGGCATAATGCGCAAGTCAGGGATCGGCTCGGTCCCCCTCTATGTGCTGTCGGT
65 GCCAACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTA-GTGCTGTCGAT
*
21645317 CCTACTGCCAAAACCCTC-GATCCGGCTGGG
129 CCTACTGCCAAAACCCTCAG-TCCGGCTGGA
** * **
21645347 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGACAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
21645412 CCAATCGAAGAGGTAGAATGCGTAAGCCGGGGATCGACCCAGT-CCCCTCTACGTGCTATCGATC
66 CCAACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTA-GTGCTGTCGATC
21645476 CT
130 CT
21645478 GCTATCGTAA
Statistics
Matches: 234, Mismatches: 47, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
155 3 0.01
156 50 0.21
157 41 0.18
158 21 0.09
159 117 0.50
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGACAACCCACGAAACGAGCGTGCGGGCACTCAG
CCAACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTAGTGCTGTCGATCC
TACTGCCAAAACCCTCAGTCCGGCTGGA
Found at i:21646687 original size:15 final size:12
Alignment explanation
Indices: 21646656--21646697 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
21646646 CCTTCCGACA
21646656 TGCTGTTGATCC
1 TGCTGTTGATCC
21646668 TGCTGTTGATCC
1 TGCTGTTGATCC
* *
21646680 TGCTGCTGGTCC
1 TGCTGTTGATCC
21646692 TGCTGT
1 TGCTGT
21646698 CGCAAGCCTC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.05, C:0.26, G:0.29, T:0.40
Consensus pattern (12 bp):
TGCTGTTGATCC
Found at i:21647001 original size:158 final size:157
Alignment explanation
Indices: 21646747--21647248 Score: 525
Period size: 158 Copynumber: 3.2 Consensus size: 157
21646737 ACTCCGTATG
* * * *
21646747 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCG-TTAGC
* ** * * *
21646812 CGGTTGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTATCAATCCT
65 TGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCAATCCT
21646877 GCTACCGCAACCCTCGGTCTGGTCTGAT
130 GCTACCGCAACCCTCGGTCTGGTCTGAT
* *
21646905 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTTGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGTT-AG
* * ** *
21646969 CTGGCCGAAGAGGCATAATACGCAAGCCGGGGATCGACCCGATCCCCCTCTATGTGCTGCCAGA-
64 CTGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTGTCA-AT
* ** * *
21647033 CCCG-TTTCGACAACCCTCGGTCT-GCCTGGGT
127 CCTGCTACCG-CAACCCTCGGTCTGGTCT-GAT
*
21647064 CTTAGACATGGAATGAACT-CGCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTTAG
1 CTTAGACATGGAATGAACTCCG-TATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCG-TTAG
* *** * * * *
21647128 -TCGGCC-AGAGAGGCAGAATGCGCAAGCCAGGGATCGGTTCGATCCCTCTTGCATGCTGTCGAT
64 CT-GGCCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCAAT
* *
21647191 CCTGCTACCGCAACCCTCGATCCGGTCTGAT
127 CCTGCTACCGCAACCCTCGGTCTGGTCTGAT
* *
21647222 CTTAGA-TTGGAAATGAACTCTGTATGC
1 CTTAGACATGG-AATGAACTCCGTATGC
21647249 TCAAACTGGG
Statistics
Matches: 281, Mismatches: 47, Indels: 32
0.78 0.13 0.09
Matches are distributed among these distances:
157 6 0.02
158 147 0.52
159 124 0.44
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGTTAGCT
GGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCAATCCTG
CTACCGCAACCCTCGGTCTGGTCTGAT
Found at i:21647627 original size:26 final size:26
Alignment explanation
Indices: 21647589--21647641 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21647579 CTGGTTCAAT
*
21647589 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21647615 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
21647641 C
1 C
21647642 CTAAGGTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21648015 original size:159 final size:157
Alignment explanation
Indices: 21647707--21648020 Score: 335
Period size: 159 Copynumber: 2.0 Consensus size: 157
21647697 TGCACAAACC
* ** *
21647707 GGGGATGGCCCGATCCCCCCTGCATGCTGTCGATCCTGCTGCTGCAACCCTTAGTTCGGTCTGAT
1 GGGGATGGCCCGATCCCCCCTGCATGCTGTCGATCCCGCTGCCACAACCCTCAGTTCGGTCTGAT
* * * * * * * * * *
21647772 CTTAGACTGGGAATGAATTGCGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGTGTTGAGC
66 CTTAGACTGGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGCGGATGCTAAGC
*
21647837 TGGCCAAAAAGGCATAATGCGTAAGCT
131 TGGCCAAAAAGGCAGAATGCGTAAGCT
* * * * *
21647864 GGGGATCGGCCTGATCCCTCTCTGCATGCTGTCGATCCCGTTGCCATAACCCTCGGTTCGG-CTG
1 GGGGAT-GGCCCGATCCC-CCCTGCATGCTGTCGATCCCGCTGCCACAACCCTCAGTTCGGTCTG
* * * *
21647928 GTGCTTAGACAT-GGAATAAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGATGCT
64 AT-CTTAGAC-TGGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGCGGATGCT
* * *
21647992 AAGCTGGCCAGAGAGGTAGAATGCGTAAG
127 AAGCTGGCCAAAAAGGCAGAATGCGTAAG
21648021 TCGAGGATCA
Statistics
Matches: 126, Mismatches: 27, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
157 6 0.05
158 14 0.11
159 105 0.83
160 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.23
Consensus pattern (157 bp):
GGGGATGGCCCGATCCCCCCTGCATGCTGTCGATCCCGCTGCCACAACCCTCAGTTCGGTCTGAT
CTTAGACTGGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGCGGATGCTAAGC
TGGCCAAAAAGGCAGAATGCGTAAGCT
Found at i:21648123 original size:25 final size:26
Alignment explanation
Indices: 21648089--21648139 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21648079 CTGATCTGAT
21648089 CTTAGACT-GGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21648114 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21648140 AATAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21648410 original size:26 final size:26
Alignment explanation
Indices: 21648381--21648433 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21648371 TCGGTCTGAT
21648381 CTTAGACTGG-GAATGAAATCTGTATG
1 CTTAGACTGGAG-ATGAAATCTGTATG
*
21648407 CTTAGACTGGAGATGAACTCTGTATG
1 CTTAGACTGGAGATGAAATCTGTATG
21648433 C
1 C
21648434 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAGATGAAATCTGTATG
Found at i:21648794 original size:26 final size:26
Alignment explanation
Indices: 21648765--21648839 Score: 125
Period size: 26 Copynumber: 2.9 Consensus size: 26
21648755 TCTAATCTTG
21648765 GACTGGGAATGAACTCCGTATGCTTA
1 GACTGGGAATGAACTCCGTATGCTTA
21648791 GACTGGGAATGAACTCCGTATGCTTA
1 GACTGGGAATGAACTCCGTATGCTTA
*
21648817 GACAT-GGAATGAACTTCGTATGC
1 GAC-TGGGAATGAACTCCGTATGC
21648840 CTAAGCCAAC
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 46 0.98
27 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
GACTGGGAATGAACTCCGTATGCTTA
Found at i:21650046 original size:26 final size:26
Alignment explanation
Indices: 21650004--21650056 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21649994 GGCTCAAAAT
*
21650004 CTTAGACTGAGAGTGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
21650030 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCATATG
21650056 C
1 C
21650057 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:21650325 original size:15 final size:15
Alignment explanation
Indices: 21650305--21650340 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
21650295 CCCCTCTGCG
21650305 TGCTGCTGCCGGTCC
1 TGCTGCTGCCGGTCC
21650320 TGCTGCTGCCGGTCC
1 TGCTGCTGCCGGTCC
21650335 TGCTGC
1 TGCTGC
21650341 CACAACCCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.00, C:0.39, G:0.33, T:0.28
Consensus pattern (15 bp):
TGCTGCTGCCGGTCC
Found at i:21650557 original size:26 final size:26
Alignment explanation
Indices: 21650521--21650571 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21650511 TCAGGTCCAT
21650521 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
21650547 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATAAACTCCGTAT
21650572 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:21650926 original size:26 final size:26
Alignment explanation
Indices: 21650888--21650940 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21650878 CCGATCCAAT
*
21650888 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21650914 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21650940 C
1 C
21650941 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21651409 original size:158 final size:156
Alignment explanation
Indices: 21650914--21651415 Score: 474
Period size: 158 Copynumber: 3.2 Consensus size: 156
21650904 ACTTCGTATG
* * *
21650914 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * *** * *
21650979 CGGCT-AGAGAGACAGAATGTGCAAGCCGGGGA-CTGACCCAATCCCCCCTGCGTGCTATCAATC
66 CGACTGA-AGAGGCAGAATGTGCAAGCCGGGGATC-GGCCTGGT-CTCCCTGCGTGCTATCGATC
* * * *
21651042 CTGCTATCGTAACCCTCGGTCCGGTCTGAT
128 CTACTACCGCAACCCTCGATCC-GTCTGAT
* * * *
21651072 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * * * * *
21651136 CTGACCGGAGAGGCATAATGCGTAAGCCAGGGATCAGCCTGGTCTCCCTTTGTGTGCTACCGATC
65 CCGACTGAAGAGGCAGAATGTGCAAGCCGGGGATCGGCCTGGTCTCCC--TGCGTGCTATCGATC
* * * * **
21651201 CTACTGCCACAACCCTCAGTTTCG-CTGGGG
128 CTACTACCGCAACCCTC-GATCCGTCT-GAT
* * *
21651231 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCACGAAACGGGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * *
21651296 CGATTGAAGAGGTAGAATGTGCAAGTCGGGGATCGGTCTGGTCTGCCCTGCATGCTATCGATCCT
66 CGACTGAAGAGGCAGAATGTGCAAGCCGGGGATCGGCCTGGTCT-CCCTGCGTGCTATCGATCCT
21651361 ACTACCGCAACCCTCGATCCGATCTGAT
130 ACTACCGCAACCCTCGATCCG-TCTGAT
21651389 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
21651416 TTAGACTAGG
Statistics
Matches: 270, Mismatches: 62, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 10 0.04
158 136 0.50
159 117 0.43
160 7 0.03
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGACTGAAGAGGCAGAATGTGCAAGCCGGGGATCGGCCTGGTCTCCCTGCGTGCTATCGATCCTA
CTACCGCAACCCTCGATCCGTCTGAT
Found at i:21651418 original size:26 final size:26
Alignment explanation
Indices: 21651389--21651441 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21651379 CCGATCTGAT
21651389 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
21651415 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
21651441 C
1 C
21651442 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:21652253 original size:26 final size:26
Alignment explanation
Indices: 21652224--21652276 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21652214 CCGGTCTGAT
21652224 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
21652250 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
21652276 C
1 C
21652277 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:21652892 original size:846 final size:838
Alignment explanation
Indices: 21650004--21653144 Score: 2835
Period size: 835 Copynumber: 3.7 Consensus size: 838
21649994 GGCTCAAAAT
* * **
21650004 CTTAGACTGAGAGTGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * **
21650069 ACGAAACT-AGCGTGCGGCGC-C-CAGCCAGCCAGAAAGGCAGAACGCGCAAGCCGGGGATTGAC
66 ATGAAA-TGAGCGTGCGG-GCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGACCGAC
** * * * * * * * * * *
21650131 CTGGTCCCTCCTGCGTGTTGTCAATCATGCTACCACAACCCTCAGTTCGGTCCAATCTTAGACTG
129 CCAGTCCCCCCTGCGTGCTATCGATCCTGCTATCACAACCCTC-GGTCCGTTCGATCTTAGACTG
** * * *
21650196 GTTATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAGTCGACCGGAG
193 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGCTGAGCCGACCGGAG
* ** * *
21650261 AGGCATAATGCACAAGTC-GTGGATCGACCCAGTCCCCCTCTGCGTGCTGCTGCCGGTCCTGCTG
258 AGGCATAATACGTAAGCCAG-GGATCG-GCCAGT----C-C--C---CT-CT----G---TG-TG
* *
21650325 CTGCCGGTCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATG
302 CTGCCGGTCCAGCTGCCACAACCCTCGGTCC-GCTGGGGCTTAGACATGGAATGAACTCCCTACG
* * * ** * * ** *
21650390 CCTAAGCCAACCCACGAAACGAGCGTGCCGATGCTCAACCAGCCGGAGAGGCAGAATGCGTAAGC
366 CCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGCCGGTTGGAGAGGCAGAATGCGCAAGC
* * * * * * * * *
21650455 TGGCGATCGATCCGGTCCCCCCTGCGTGCTGTCGATCCTACTATCGCATCCCTCGATCAGGTC-C
431 CGGGGATCGGTCCGGTCCCCCCTGCATGCTGTCGATCCTACTACCGCAACCCTCGATCCGATCTG
* * *
21650519 ATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATACCTAAGTCAAC
496 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAAC
* * * ** * * *
21650584 CCACGAAAAGAGCGTGCGGGCGCTCA-ACAGGCCGGAGGGGCATAAGGCACAAGCCGGGGATCAA
561 CCACGAAAAGAGTGTGCAGGCGCTCAGTCAGATCGGAGAGGCATAATGCACAAGCCGGGGATCAG
* * * *
21650648 CCTGATCCCCCTCTGCGTGCTGTCGATCCCACTGTCGGTCTTCCTGCCACAACCCTTGGTCCAAT
626 CCTGGT----C-C--C-T-C--TC--T---A---TCGGTCCTACT--C-CAA-CCTTGGTCCAAC
* * *
21650713 TGGGGCTTAGACCTGGAATGAAC-TCTGTATGCCTAAGCCAACCCAAAAAATGAGCGTGCGGGCG
668 TGGGGCTTAGA-ATGGAAT-AACTTC-GTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCG
* * * * * * *
21650777 CTCAGTC-GACCGAAGAGGTAGAAT-CGTAAACCGGGGATCAATCCGGTCCCCTCCTACGTGCTA
730 CTCA-ACAG-TCGAAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGGTCCCC-CCTACGTGCTG
* * * * * * *
21650840 CCGATCCTACTGCTGGTCCTACTGTCGCAACCATCGGTCCGATCCAA
792 TCGATCCTGCTGCTGGTCCTGCTGTCGCAACCTTCAGTCCGGTCGAA
21650887 TCTTAGACTGGGAATGAACT-TCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 -CTTAGACTGGGAATGAACTCT-GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
21650951 CCATGAAACGAGCGTGCGGGCACTCAGCCGG-CTAGAGAGACAGAATGTGCAAGCCGGGGACTGA
64 CCATGAAATGAGCGTGCGGGCACTCAGCCGGTC-GGAGAGGCAGAATGCGCAAGCCGGGGACCGA
* * ** *
21651015 CCCAATCCCCCCTGCGTGCTATCAATCCTGCTATCGTAACCCTCGGTCCGGTCTGATCTTAGACT
128 CCCAGTCCCCCCTGCGTGCTATCGATCCTGCTATCACAACCCTCGGTCCGTTC-GATCTTAGACT
* *
21651080 GGGAATGAACT-TCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGTGCTGAGCTGACCGG
192 GGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGCTGAGCCGACCGG
* * * * * *
21651144 AGAGGCATAATGCGTAAGCCAGGGATCAGCCTGGTCTCCCTTTGTGTGCTACCGATCCTA-CTGC
256 AGAGGCATAATACGTAAGCCAGGGATCGGCC-AGTC-CCCTCTGTGTGCTGCCGGTCC-AGCTGC
* * * *
21651208 CACAACCCTCAGTTTCGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCACG
318 CACAACCCTC-GGTCCGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACG
* * * * * *
21651273 AAACGGGCGTACGGGCGCTCAGCCGATTGAAGAGGTAGAATGTGCAAGTCGGGGATCGGTCTGGT
382 AAACGGGCGTACGGGCGCTCAGCCGGTTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTCCGGT
** *
21651338 CTGCCCTGCATGCTATCGATCCTACTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAAT
447 CCCCCCTGCATGCTGTCGATCCTACTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAAT
*
21651403 GAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTG
512 GAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGTGTG
* * *
21651468 CAGGCACTCAACGAATCGAAGAGGTTGGTCGGAGAGGCATAATGCACAAGCTGGGGATCAGCCCG
577 CAGGCGCTC-A-G--TC--AGA------TCGGAGAGGCATAATGCACAAGCCGGGGATCAGCCTG
* * * *
21651533 GTCCC-C-C--TCGGT-CTGA-TCCAATCTTAG----ACT-GGG----G-AT-G---AACTCCAT
630 GTCCCTCTCTATCGGTCCT-ACTCCAACCTTGGTCCAACTGGGGCTTAGAATGGAATAACTTCGT
** * * *
21651578 ATGCCTAAGTTAACCCATGAAACGAGCGTGC-GGCACTCAACAGGTC-AGAGAGGTAGAATGCAC
694 ATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAACA-GTCGA-AGAGGTAGAATGCGC
* * ** * *
21651641 AAGCCGAGGATCG-GCCGGTCCCCCCGGCGTGCTGTCGATCCTGTTGCTGGTCTTGCTGTCGCAA
757 AAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTGCTGTCGCAA
* * *
21651705 GCTTCAGTTCGGTCCGAT
822 CCTTCAGTCCGGT-CGAA
* *
21651723 CTTAGGCTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
** * *
21651788 ACAAAATGAGCATGCGGGCACTCAGCCGGTTGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCC
66 ATGAAATGAGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCC
*** * * * * *
21651853 -GATCCCCCCTATATGCTATCGATCCTGCTACCTCAACGCTCGGTCTGATCCGATCTTAGACTGG
131 AG-TCCCCCCTGCGTGCTATCGATCCTGCTATCACAACCCTCGGTCCG-TTCGATCTTAGACTGG
* * * * *
21651917 GAATGAACTCTGTATGCCTAAGTCGACCCACGAAACAAGCGTTTGGGTGTTGAGCC-AGCCGGAA
194 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGCTGAGCCGA-CCGGAG
* * * * * *
21651981 AGGCATAATACGCAAGCCGGGGATCGGCCCAGTCCCCCTCTGTGTGCTGTCGGGCCTGTTGCCAC
258 AGGCATAATACGTAAGCCAGGGATCGG-CCAGT-CCCCTCTGTGTGCTGCCGGTCCAGCTGCCAC
* *
21652046 AACCCTCGGTCCGCCTGGGGCTTAGACATGGAATGAAATCCCTACGCCTAATCCAACCCACGAAA
321 AACCCTCGGTCCG-CTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAA
* * * *
21652111 CGGGCATACGGGCGCTTAGCCGGTTGGAGAGGTAGAATGCGCAAGCCGAGGATCGGTCCGGTCCC
385 CGGGCGTACGGGCGCTCAGCCGGTTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTCCGGTCCC
* * * *
21652176 CCCTGCATGCTGTCGATCCTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAA
450 CCCTGCATGCTGTCGATCCTACTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAA
* **
21652241 CTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATG-AACCAGTGTGCAG
515 CTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGTGTGCAG
*
21652305 GCGCTCAGTC-GATCGGAGAGGCATAATGCACAAGCCGGGGATTAGCCTGGTCCCTCTCTATCGG
580 GCGCTCAGTCAGATCGGAGAGGCATAATGCACAAGCCGGGGATCAGCCTGGTCCCTCTCTATCGG
21652369 TCCTACTACCGTAACCTTCGGTCCAACTGGGGCTTAGATATGGAATTAACTTCGTATGCCTAAGC
645 TCCTACT-CC--AACCTT-GGTCCAACTGGGGCTTAGA-ATGGAA-TAACTTCGTATGCCTAAGC
* * * * * *
21652434 CAACCCACGAAACGAGAGTGCGGGTGCTCAACCAGTCGAAGAGGCACAATGCGCAAGCTGGGGAT
704 CAACCCAAGAAACGAGCGTGCGGGCGCTCAA-CAGTCGAAGAGGTAGAATGCGCAAGCCGGGGAT
* **
21652499 CGACCCGGT-CCCCCTACGTGCTGTAGATCCTGCTGCTGGTCCTGCTACCGCAACCTTCAGTCCG
768 CGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTGCTGTCGCAACCTTCAGTCCG
21652563 GTCGAA
833 GTCGAA
* * *
21652569 CTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGCATGAACTCTGTATGCCTAAGCCAACTC
1 CTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * ** * *
21652634 ATGAAATAAGTGTACGGGCGCTCAGCTGGTCGGAAAGGCAGAATGCATAAGCCGGGCACCGGCCC
66 ATGAAATGAGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCC
* ** * * * * * * *
21652699 AGTCCTCCAGGCGTGCTGTCGATCCTACTGTCACGACCCTCAGTCCGTTTCGATCTTAGATTGAG
131 AGTCCCCCCTGCGTGCTATCGATCCTGCTATCACAACCCTCGGTCCG-TTCGATCTTAGACTGGG
* * *
21652764 AATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGACCGGAGAG
195 AATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGCTGAGCCGACCGGAGAG
* * *
21652829 GCATAATACGTAAGTCAGGGATCGGTCCAATCCCTCTCTGTGTGCTGTCGGTCCAGCTGCCACAA
260 GCATAATACGTAAGCCAGGGATCGG-CCAGTCCC-CTCTGTGTGCTGCCGGTCCAGCTGCCACAA
* * * *
21652894 CCCTCGGTCTGGTTAGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATGAAACG
323 CCCTCGGTC-CGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACG
* * * * ** * *
21652959 GGCGTGGCGGGTGCTCAAGTC-GTTCGGAGAGGCAGAATACGTTGAGTCCGGGGATCAGCTGCGG
387 GGCGT-ACGGGCGCTC-AGCCGGTT-GGAGAGGCAGAATGCG-CAAG-CCGGGGATC-GGTCCGG
* * ** * *
21653023 T-CCCCCTGC-CG-TGTTACGATGTCCTGCTGTCGTAACCCCTCGGTCCCGATCTGAGTCTTAGA
446 TCCCCCCTGCATGCTG-T-CGA--TCCTACTACCGCAA-CCCTCGAT-CCGATCTGA-TCTTAGA
* * *
21653085 CTGGGAATGAACTCCGTATGCTTTAGATTGGGGATGAACTCCGTATGCCTAAGGCAACCC
504 CTGGGAATGAACTCCGTATGC-TTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCC
21653145 CTGAAACAAG
Statistics
Matches: 1863, Mismatches: 304, Indels: 208
0.78 0.13 0.09
Matches are distributed among these distances:
821 39 0.02
822 1 0.00
823 1 0.00
825 6 0.00
826 3 0.00
827 4 0.00
829 5 0.00
830 3 0.00
832 1 0.00
833 1 0.00
834 24 0.01
835 531 0.29
836 35 0.02
837 42 0.02
838 1 0.00
839 1 0.00
841 3 0.00
842 2 0.00
844 1 0.00
845 3 0.00
846 360 0.19
847 94 0.05
848 30 0.02
849 6 0.00
850 19 0.01
851 6 0.00
852 11 0.01
853 11 0.01
854 11 0.01
855 29 0.02
856 35 0.02
857 2 0.00
858 5 0.00
867 157 0.08
868 89 0.05
869 1 0.00
871 2 0.00
873 1 0.00
874 1 0.00
875 3 0.00
876 3 0.00
877 1 0.00
879 1 0.00
881 35 0.02
883 2 0.00
884 84 0.05
885 156 0.08
886 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (838 bp):
CTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ATGAAATGAGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCC
AGTCCCCCCTGCGTGCTATCGATCCTGCTATCACAACCCTCGGTCCGTTCGATCTTAGACTGGGA
ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGCTGAGCCGACCGGAGAGG
CATAATACGTAAGCCAGGGATCGGCCAGTCCCCTCTGTGTGCTGCCGGTCCAGCTGCCACAACCC
TCGGTCCGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGGGCG
TACGGGCGCTCAGCCGGTTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTCCGGTCCCCCCTGC
ATGCTGTCGATCCTACTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGT
ATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGTGTGCAGGCGCTC
AGTCAGATCGGAGAGGCATAATGCACAAGCCGGGGATCAGCCTGGTCCCTCTCTATCGGTCCTAC
TCCAACCTTGGTCCAACTGGGGCTTAGAATGGAATAACTTCGTATGCCTAAGCCAACCCAAGAAA
CGAGCGTGCGGGCGCTCAACAGTCGAAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGGTCCCC
CCTACGTGCTGTCGATCCTGCTGCTGGTCCTGCTGTCGCAACCTTCAGTCCGGTCGAA
Found at i:21653121 original size:27 final size:27
Alignment explanation
Indices: 21653080--21653132 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
21653070 GATCTGAGTC
21653080 TTAGACTGGGAATGAACTCCGTATGCT
1 TTAGACTGGGAATGAACTCCGTATGCT
* *
21653107 TTAGATTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
21653133 CTAAGGCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (27 bp):
TTAGACTGGGAATGAACTCCGTATGCT
Found at i:21653319 original size:26 final size:27
Alignment explanation
Indices: 21653290--21653343 Score: 85
Period size: 26 Copynumber: 2.0 Consensus size: 27
21653280 CCGATCTGAT
21653290 CTTAGAC-TGGGAATG-AACTCCGTATG
1 CTTAGACAT-GGAATGAAACTCCGTATG
21653316 CTTAGACATGGAATGAAACTCCGTATG
1 CTTAGACATGGAATGAAACTCCGTATG
21653343 C
1 C
21653344 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (27 bp):
CTTAGACATGGAATGAAACTCCGTATG
Found at i:21654224 original size:26 final size:26
Alignment explanation
Indices: 21654173--21654225 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21654163 CCGGTCCAAT
*
21654173 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21654199 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21654225 C
1 C
21654226 CTAAACCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21654724 original size:26 final size:26
Alignment explanation
Indices: 21654673--21654725 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21654663 CCAGTCTGAT
**
21654673 CTTAGACTGGGAATGAACTTTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21654699 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21654725 C
1 C
21654726 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21655735 original size:26 final size:26
Alignment explanation
Indices: 21655685--21655737 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21655675 CCGGTTCGAT
**
21655685 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
21655711 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21655737 C
1 C
21655738 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21655918 original size:26 final size:26
Alignment explanation
Indices: 21655880--21655932 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
21655870 CCGATCAGAT
*
21655880 CTTAGACTAGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATAAACTCT-GTATG
21655906 CTTAGAC-ATGGAATAAACTCTGTATG
1 CTTAGACTA-GGAATAAACTCTGTATG
21655932 C
1 C
21655933 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 22 0.92
27 1 0.04
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCTGTATG
Found at i:21657176 original size:159 final size:155
Alignment explanation
Indices: 21656790--21657287 Score: 481
Period size: 159 Copynumber: 3.1 Consensus size: 155
21656780 CAGTATGCTT
* *
21656790 AGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGGCGTTCAGCCG
1 AGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGC-AGCGGGCGCTCAGCCG
* * *
21656854 GCAGGAGAGGCAGAATGC-CTAAGTCGGGG-TCAGACCCGATCCCCCTGCGTGCTGTCGATCCTA
64 CCA-GAGAGGCAGAATGCGC-AAGCCGGGGATC-GACCCGATCCCCCTGCGTGCTGTCGATCCTG
* *
21656917 CTGCCGCAACCCTCGGTCCGATCCGATCTT
126 CTGCCGCAACCCTCGGTCCGATCCGAGCTC
* * * * *
21656947 AGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA-TGAGC-GTACGGGCACTGAGCC
1 AGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCAG--CGGGCGCTCAGCC
* * * * *
21657010 GGTCAGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGTTCCCCCTCTGTGTGCTGCCCG-TCC
63 -GCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGAT-CCCC-CTGCGTGCTG-TCGATCC
* * *
21657074 TGCTGCCACAACCCTCGGTCCGA-CTGGGGCTC
124 TGCTGCCGCAACCCTCGGTCCGATC-CGAGCTC
* * *
21657106 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAG-GCACGCGGGTGCTCAGCCA
1 AGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCA-GCGGGCGCTCAGCC-
* * * * *
21657170 GCCAGAGAGGCAGAATGTGCAAGCCAGGTATCGGCCCGGTACCCCCTGCGTGCTGTCGATCCTGC
63 GCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGAT-CCCCCTGCGTGCTGTCGATCCTGC
* * * *
21657235 TGCCGCAACCCTCGGTCCGGTTCGATCTT
127 TGCCGCAACCCTCGGTCCGATCCGAGCTC
*
21657264 AGACTAGGAATGAACTCCATATGC
1 AGACT-GGAATGAACTCCGTATGC
21657288 TTAGACTAGG
Statistics
Matches: 279, Mismatches: 44, Indels: 35
0.78 0.12 0.10
Matches are distributed among these distances:
155 1 0.00
156 1 0.00
157 83 0.30
158 68 0.24
159 121 0.43
160 4 0.01
161 1 0.00
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (155 bp):
AGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCAGCGGGCGCTCAGCCGCC
AGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTGCGTGCTGTCGATCCTGCTGCC
GCAACCCTCGGTCCGATCCGAGCTC
Found at i:21657329 original size:879 final size:880
Alignment explanation
Indices: 21655723--21657353 Score: 2183
Period size: 879 Copynumber: 1.9 Consensus size: 880
21655713 TAGACTGGGG
* *
21655723 ATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCAGGCGCTCAGCCAGCGGAGAGGC
1 ATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACAGGCGCTCAGCCAGCGGAGAGGC
* * * *
21655788 AAAATGCGCAAGCCGGGGGTTGGCCCGATCCCTCCTGCATGCTGTCGGTCCTGCTGCAGGTCCTG
66 AAAATGCGCAAGCCGGAGGTTAGCCCGATCCCTCCTGCATGCTGTCGATCCTGCTACAGGTCCTG
* * *
21655853 CTGCCGTAACCCTCGATCCGATCAGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACATGGA
131 CTACCGCAACCCTCGATCCGATCAGATCTTACACTAGGAATGAACTTCGTATGCTTAGACATGGA
* * * *
21655918 ATAAACTCTGTATGCCTAAGCCAACCAATGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGG
196 ATAAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCAGGAGAGG
* * * *
21655983 CAGAATGCACAAGTCGGAGACCGGCTCGATGCCCCCTGCGTGCTGTCGATCCTGCTACCACAACC
261 CAGAATGCACAAGTCGGAGACAGACCCGATGCCCCCTGCGTGCTGTCGATCCTACTACCACAACC
* * *
21656048 CTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGAG
326 CTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGAG
* * * * * *
21656113 CGTTCAGACGCTGAGCCGGCCGAAGAGGCATAATGTGCAAGCCGGGGATCGACCTGGTCCCATCT
391 CGTACAGACACTGAGCCGGCAGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCACCT
* * * * * *
21656178 CTACGTGTTGTCGGTCCCGCTGCCAAAAACCCTCAGTCTAGCTGGGCTTAGACATGGAGTGAACT
456 CTACGTGCTGCCCGTCCCGCTGCCAAAAACCCTCAGTCGAGCTGGGCTCAGACATGGAATGAACT
* *** *
21656243 CCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAGCCAGCCGAAGAGGTAAAATG
521 CCCTATGCCTAAGCCAACCCATGAAACAGGCACGCGGGTGCTCAGCCAGCCGAAGAGGCAAAATG
*** * * * *
21656308 CGTAAATTGAGGATCAGCCCAGTCCCCCCTATGTGCTGTCGATCCTGCTACTGCAACCCTCGGTT
586 CGTAAAGCCAGGATCAGCCCAGTACCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTC
* * * ** *
21656373 TGGTTCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTATGGATGAACACTGTATGCCTA
651 CGGTTCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGGATGAACACTGTATGCCTA
* *
21656438 AGTCAACCCATGAAACGAGGGTACGGGTGCTCAGTCGGTCGAAGAGTCGATCGAAAAGGCATAAT
716 AGTCAACCCATGAAACGAGCGTACGGATGCTCAGTCGGTCGAAGAGTCGATCGAAAAGGCATAAT
21656503 GCGTAAGCCGAGGATCAGCTCGATCCCCTTCTGCGTATTACCGATCCTGCTGCCAGTCCTGCTGC
781 GCGTAAGCCGAGGATCAGCTCGATCCCCTTCTGCGTATTACCGATCCTGCTGCCAGTCCTGCTGC
21656568 CACAACCCCCGATTCGGCTGGGGTTTAGACATGGA
846 CACAACCCCCGATTCGGCTGGGGTTTAGACATGGA
* * * *
21656603 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGATCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACAGGCGCTCAG-CCAGCGGAGAGG
* * * * * * * *
21656668 TAGAATGCGTAAGTC-GAGGTTCAGCCCGGT-CCTCTCTGCGTGCTGTCGATCCTGCTACTGGTT
65 CAAAATGCGCAAGCCGGAGGTT-AGCCCGATCCCTC-CTGCATGCTGTCGATCCTGCTACAGGTC
* * *
21656731 CTGCTACCGCAACCCTC-AGTCTGGTCTGATCTTACACT-GAGAATGAAC-TCAGTATGCTTAGA
128 CTGCTACCGCAACCCTCGA-TCCGATCAGATCTTACACTAG-GAATGAACTTC-GTATGCTTAGA
* * * *
21656793 CTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGGCAG
190 CATGGAATAAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCAG
* * *
21656858 GAGAGGCAGAATGC-CTAAGTCGGGGTCAGACCCGAT-CCCCCTGCGTGCTGTCGATCCTACTGC
255 GAGAGGCAGAATGCAC-AAGTCGGAGACAGACCCGATGCCCCCTGCGTGCTGTCGATCCTACTAC
* *
21656921 CGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAAC-TCTGTATGCCTAAGTCAACCCAC
319 CACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTC-ATATGCCTAAGTCAACCCAC
* * *
21656985 GAAATGAGCGTACGGGCACTGAGCCGGTCAG-AGAGGCATAATGCGCAAGCCGGGGATCGACCCG
383 GAAACGAGCGTACAGACACTGAGCCGG-CAGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCG
* ** * * *
21657049 TTCCC-CCTCTGTGTGCTGCCCGTCCTGCTGCC-ACAACCCTCGGTCCGA-CTGGGGCTCAGACA
447 GTCCCACCTCTACGTGCTGCCCGTCCCGCTGCCAAAAACCCTCAGT-CGAGCT-GGGCTCAGACA
21657111 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCACGCGGGTGCTCAGCCAGCC-AG
510 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCACGCGGGTGCTCAGCCAGCCGA-
* * * * * * *
21657175 AGAGGCAGAATGTG-CAAGCCAGGTATCGGCCCGGTACCCCCTGCGTGCTGTCGATCCTGCTGCC
574 AGAGGCAAAATGCGTAAAGCCAGG-ATCAGCCCAGTACCCCCTACGTGCTGTCGATCCTGCTACC
21657239 GCAACCCTCGGTCCGGTTCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGGATGAA
638 GCAACCCTCGGTCCGGTTCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGGATGAA
** * *
21657304 CTTTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGATGCTCAGTCG
703 CACTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGATGCTCAGTCG
21657354 ACCAGAAAGG
Statistics
Matches: 642, Mismatches: 96, Indels: 27
0.84 0.13 0.04
Matches are distributed among these distances:
878 18 0.03
879 237 0.37
880 200 0.31
881 187 0.29
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (880 bp):
ATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACAGGCGCTCAGCCAGCGGAGAGGC
AAAATGCGCAAGCCGGAGGTTAGCCCGATCCCTCCTGCATGCTGTCGATCCTGCTACAGGTCCTG
CTACCGCAACCCTCGATCCGATCAGATCTTACACTAGGAATGAACTTCGTATGCTTAGACATGGA
ATAAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCAGGAGAGG
CAGAATGCACAAGTCGGAGACAGACCCGATGCCCCCTGCGTGCTGTCGATCCTACTACCACAACC
CTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGAG
CGTACAGACACTGAGCCGGCAGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCACCT
CTACGTGCTGCCCGTCCCGCTGCCAAAAACCCTCAGTCGAGCTGGGCTCAGACATGGAATGAACT
CCCTATGCCTAAGCCAACCCATGAAACAGGCACGCGGGTGCTCAGCCAGCCGAAGAGGCAAAATG
CGTAAAGCCAGGATCAGCCCAGTACCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTC
CGGTTCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGGATGAACACTGTATGCCTA
AGTCAACCCATGAAACGAGCGTACGGATGCTCAGTCGGTCGAAGAGTCGATCGAAAAGGCATAAT
GCGTAAGCCGAGGATCAGCTCGATCCCCTTCTGCGTATTACCGATCCTGCTGCCAGTCCTGCTGC
CACAACCCCCGATTCGGCTGGGGTTTAGACATGGA
Found at i:21657881 original size:20 final size:20
Alignment explanation
Indices: 21657841--21657881 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
21657831 TTATGTGCGC
*
21657841 ACCCCCGACCCCCATCGCGG
1 ACCCCCGACCCCCATCCCGG
21657861 ACCCCCG-CCCCCATCACCGG
1 ACCCCCGACCCCCATC-CCGG
21657881 A
1 A
21657882 ACCCGCAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.17, C:0.61, G:0.17, T:0.05
Consensus pattern (20 bp):
ACCCCCGACCCCCATCCCGG
Found at i:21658035 original size:26 final size:26
Alignment explanation
Indices: 21657997--21658049 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21657987 GGCTCAAACT
*
21657997 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21658023 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21658049 C
1 C
21658050 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21658369 original size:26 final size:26
Alignment explanation
Indices: 21658340--21658392 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21658330 CCGGTTCAAT
21658340 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
21658366 CTTAGACTGGGGTTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21658392 C
1 C
21658393 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21658587 original size:26 final size:26
Alignment explanation
Indices: 21658549--21658601 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21658539 CCAGTCTGAT
21658549 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21658575 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21658601 C
1 C
21658602 CTAAGCTAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21659030 original size:158 final size:159
Alignment explanation
Indices: 21658771--21659187 Score: 357
Period size: 159 Copynumber: 2.6 Consensus size: 159
21658761 ACTCCGTATG
* * *
21658771 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTAAGT
* * ** * *
21658836 CGGCTGGAGAGGCAGAATGCGTAAGTCGGGGTTCGGC-CTGGTCCCCC-CTATGTGCTATCGATC
66 CGACCGGAGAGGCAGAATGCCCAAGTCAGGGATCGGCTC-GGTCCCCCTCTATGTGCTATCGATC
21658899 TAGCTATCGTAACCCTCGGTTCGGTCCAAT
130 TAGCTATCGTAACCCTCGGTTCGGTCCAAT
* * * *
21658929 CTTAGAC-TGGGAATGAACTCCGTATGCGTAA-CTCAACCCACGAAATGAGCTTTCGGGCACTAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCACGAAACGAGCATACGGGCACTAA
* *
21658992 G-CTGACCGGAGAGGCATAATGCCCAAG-CTAGGGATCGGCTCGGTCCCCCTCTATGTGCTGTCG
64 GTC-GACCGGAGAGGCAGAATGCCCAAGTC-AGGGATCGGCTCGGTCCCCCTCTATGTGCTATCG
* ** ** * ** ****
21659055 ATCTCGCTGCCACAACCTTC-AATCTGG-CTGGGG
127 ATCTAGCTATCGTAACCCTCGGTTC-GGTC-CAAT
* * * * * ** * *
21659088 CTTAGACATGGAATGAAGTCCCTATGCCTAAGCAAACCCACGAAACGGGCGTGTGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTAAGT
* *
21659153 CAACCGGAGAGGCAGAATGCGCAAGTC-GAGGATCG
66 CGACCGGAGAGGCAGAATGCCCAAGTCAG-GGATCG
21659188 ACCCGATCCC
Statistics
Matches: 206, Mismatches: 40, Indels: 25
0.76 0.15 0.09
Matches are distributed among these distances:
157 4 0.02
158 92 0.45
159 106 0.51
160 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTAAGT
CGACCGGAGAGGCAGAATGCCCAAGTCAGGGATCGGCTCGGTCCCCCTCTATGTGCTATCGATCT
AGCTATCGTAACCCTCGGTTCGGTCCAAT
Found at i:21659275 original size:26 final size:26
Alignment explanation
Indices: 21659246--21659298 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21659236 TCGATCCGAT
*
21659246 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21659272 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21659298 C
1 C
21659299 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21660183 original size:158 final size:156
Alignment explanation
Indices: 21659661--21660171 Score: 479
Period size: 159 Copynumber: 3.2 Consensus size: 156
21659651 GCTTAGATAT
* * * * * * * * ** * *
21659661 GGAATGAACTCCATACGCCTAAGCCAACCAACGAAATGAACGTACGGGCACTGAGCTGATC-AGA
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCCGACCGA-A
* * * *
21659725 GAGGCAGAATGCACAAGTCGGGGACCGACCCGGTCCACCCCTGCATGCTATCGATCCTGCTACCG
65 GAGGCAGAATGCACAAGTCGGGGATCGACCCGATCC-CCCCTG-TTGCTATCGATCCTACTACCG
*
21659790 CAACCCTCGGTCCGGTCCGGTCTTAGACTG
128 CAACCCTCGGTCC-GTCTGGTCTTAGACTG
* * * * *
21659820 GGAATGAACTCCGTATGCCTAATTCAACCCACGAAACGAGCGTGCGGGTTCTGAGCCGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCCGACCGAAG
* * * * * * * * * *
21659885 AGCCATAATGCACAAGTCGGGGATCGACCCAATCCCCTTCTGCTTGTTGTCGGTCCCACTGCCAC
66 AGGCAGAATGCACAAGTCGGGGATCGACCCGATCCCC-CCTG-TTGCTATCGATCCTACTACCGC
* * * *
21659950 AACCCTCAGTCCGACTGGGGCTTAGCCAT-
129 AACCCTCGGTCCGTCT-GGTCTTAGAC-TG
* * *
21659979 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACCG-GCGTGCGGGTGCTTAGCCGACCGAA
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA-CGAGCGTGCGGGTGCTGAGCCGACCGAA
* * * * *
21660043 GAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGTGTGCTATCGATCCTACTACTGC
65 GAGGCAGAATGCACAAGTCGGGGATCGACCCGATCCCCCCTGT-TGCTATCGATCCTACTACCGC
*
21660108 AACCCTCGGTCCAGTCTGATCTTAGACTG
129 AACCCTCGGTCC-GTCTGGTCTTAGACTG
* *
21660137 GGAGTAAACTCCGTATGCCTAAGTCAACCCATGAA
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
21660172 GTGAGTGTGC
Statistics
Matches: 279, Mismatches: 65, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 70 0.25
159 204 0.73
160 3 0.01
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.19
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCCGACCGAAG
AGGCAGAATGCACAAGTCGGGGATCGACCCGATCCCCCCTGTTGCTATCGATCCTACTACCGCAA
CCCTCGGTCCGTCTGGTCTTAGACTG
Found at i:21660196 original size:158 final size:156
Alignment explanation
Indices: 21659724--21660228 Score: 476
Period size: 159 Copynumber: 3.2 Consensus size: 156
21659714 AGCTGATCAG
* * * *
21659724 AGAGGCAGAATGCACAAGTCGGGGACCGACCCGGTCCACCCCTGCATGCTATCGATCCTGCTACC
1 AGAGGCAGAATGCACAAGTCGGGGATCGACCCGATCC-CCCCTG-TTGCTATCGATCCTACTACC
* * *
21659789 GCAACCCTCGGTCCGGTCCGGTCTTAGACTGGGAATGAACTCCGTATGCCTAATTCAACCCACGA
64 GCAACCCTCGGTCC-GTCTGGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
* * * *
21659854 AACGAGCGTGCGGGTTCTGAGCCGGCCGG
128 AACGAGCGTGCGGGTGCTCAGCCGACCGA
* * * * * * * * *
21659883 AGAGCCATAATGCACAAGTCGGGGATCGACCCAATCCCCTTCTGCTTGTTGTCGGTCCCACTGCC
1 AGAGGCAGAATGCACAAGTCGGGGATCGACCCGATCCCC-CCTG-TTGCTATCGATCCTACTACC
* * * * * * *
21659948 ACAACCCTCAGTCCGACTGGGGCTTAGCCAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATG
64 GCAACCCTCGGTCCGTCT-GGTCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATG
*
21660012 AAACCG-GCGTGCGGGTGCTTAGCCGACCGA
127 AAA-CGAGCGTGCGGGTGCTCAGCCGACCGA
* * * * *
21660042 AGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGTGTGCTATCGATCCTACTACTG
1 AGAGGCAGAATGCACAAGTCGGGGATCGACCCGATCCCCCCTGT-TGCTATCGATCCTACTACCG
* * *
21660107 CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAGTAAACTCCGTATGCCTAAGTCAACCCATGAA
65 CAACCCTCGGTCC-GTCTGGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
** * * * *
21660172 GTGAGTGTGCGGATGCCCAACCGACC-A
129 ACGAGCGTGCGGGTGCTCAGCCGACCGA
* * * *
21660199 GAGGGGCGGGATGCACAAGCCGGGGATCGA
1 -AGAGGCAGAATGCACAAGTCGGGGATCGA
21660229 ATGGGTGGTA
Statistics
Matches: 273, Mismatches: 64, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
157 4 0.01
158 110 0.40
159 156 0.57
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (156 bp):
AGAGGCAGAATGCACAAGTCGGGGATCGACCCGATCCCCCCTGTTGCTATCGATCCTACTACCGC
AACCCTCGGTCCGTCTGGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
GAGCGTGCGGGTGCTCAGCCGACCGA
Found at i:21660705 original size:26 final size:26
Alignment explanation
Indices: 21660667--21660719 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21660657 GGCTCAAACT
21660667 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
21660693 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
21660719 C
1 C
21660720 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:21661039 original size:26 final size:26
Alignment explanation
Indices: 21661010--21661060 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21661000 CCGATTCGAT
21661010 CTTAGACTT-GGAATGAACTCCGTATA
1 CTTAGA-TTGGGAATGAACTCCGTATA
*
21661036 CTTAGATTGGGGATGAACTCCGTAT
1 CTTAGATTGGGAATGAACTCCGTAT
21661061 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATA
Found at i:21661257 original size:26 final size:26
Alignment explanation
Indices: 21661219--21661271 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21661209 CCGGTCAGAT
** *
21661219 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
21661245 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
21661271 C
1 C
21661272 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:21662490 original size:26 final size:26
Alignment explanation
Indices: 21662451--21662504 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
21662441 TCCGGTCTGA
21662451 GCTTAGACTAGGAATGAACTCCATAT
1 GCTTAGACTAGGAATGAACTCCATAT
*
21662477 GCTTAGAC-ATGGAATGAACTCCGTAT
1 GCTTAGACTA-GGAATGAACTCCATAT
21662503 GC
1 GC
21662505 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
GCTTAGACTAGGAATGAACTCCATAT
Found at i:21667573 original size:20 final size:20
Alignment explanation
Indices: 21667548--21667592 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
21667538 TGGACAGGTT
21667548 TTCCAAGTATGGAATCTTCA
1 TTCCAAGTATGGAATCTTCA
21667568 TTCCAAGTATGGAATCTTCA
1 TTCCAAGTATGGAATCTTCA
21667588 TTCCA
1 TTCCA
21667593 GACAGGCGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.36
Consensus pattern (20 bp):
TTCCAAGTATGGAATCTTCA
Found at i:21669342 original size:26 final size:26
Alignment explanation
Indices: 21669304--21669356 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21669294 GGCTCAAAAT
21669304 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21669330 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21669356 C
1 C
21669357 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21669684 original size:159 final size:158
Alignment explanation
Indices: 21669329--21669692 Score: 379
Period size: 158 Copynumber: 2.3 Consensus size: 158
21669319 AACTCCGTAT
* * *
21669329 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCTTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
* * * * *** * * **
21669394 CCGGTCGGAGAGGTAGAATGCGCAAGTTGGGGATTGGCCCGGTCCCCCTTACGTGTTGTCGATCC
66 CCGATCGAAGAGGCAGAATGAGCAAGCCAGGGATTGGCCCGATCCCCCTTACATGTTACCGATCC
* * **
21669459 TGCTGTCGTAACCCTCGGTTTGATCCGA
131 TGCTGCCATAACCCTCGGTCCGATCCGA
* * * * * * * *
21669487 TCTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCTACGAAACGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * *
21669551 GCCGATCGAAGAGGCATAATGAGCAAGCCAGGGATTGGCTCGATCCCCCTCTGCATGTTACCGGT
65 ACCGATCGAAGAGGCAGAATGAGCAAGCCAGGGATTGGCCCGATCCCCCT-TACATGTTACCGAT
* ** *
21669616 CCTGCTGCCATAACCCTCGGTCCGGTTGGG
129 CCTGCTGCCATAACCCTCGGTCCGATCCGA
*
21669646 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
21669693 AGGTGTGCGA
Statistics
Matches: 162, Mismatches: 41, Indels: 5
0.78 0.20 0.02
Matches are distributed among these distances:
157 1 0.01
158 90 0.56
159 70 0.43
160 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
CCGATCGAAGAGGCAGAATGAGCAAGCCAGGGATTGGCCCGATCCCCCTTACATGTTACCGATCC
TGCTGCCATAACCCTCGGTCCGATCCGA
Found at i:21669701 original size:159 final size:158
Alignment explanation
Indices: 21669329--21669756 Score: 364
Period size: 159 Copynumber: 2.7 Consensus size: 158
21669319 AACTCCGTAT
* * * *
21669329 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCT-TACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-CAGGTGTGCGGGCGCTCA
* * * * *** * * **
21669393 ACCGGTCGGAGAGGTAGAATGCGCAAGTTGGGGATTGGCCCGGTCCCCCTTACGTGTTGTCGATC
65 ACCGATCGAAGAGGCAGAATGAGCAAGCCAGGGATTGGCCCGATCCCCCTTACATGTTACCGATC
* * **
21669458 CTGCTGTCGTAACCCTCGGTTTGATCCGA
130 CTGCTGCCATAACCCTCGGTCCGATCCGA
* * * * * * * *
21669487 TCTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCTACGAAAC-GAGCGTGCGGGCGTTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAG-GTGTGCGGGCGCTC
* * * * *
21669550 AGCCGATCGAAGAGGCATAATGAGCAAGCCAGGGATTGGCTCGATCCCCCTCTGCATGTTACCGG
64 AACCGATCGAAGAGGCAGAATGAGCAAGCCAGGGATTGGCCCGATCCCCCT-TACATGTTACCGA
* ** *
21669615 TCCTGCTGCCATAACCCTCGGTCCGGTTGGG
128 TCCTGCTGCCATAACCCTCGGTCCGATCCGA
* * *
21669646 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGTGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGGCGCTCAA
* * * *
21669711 CC-AGCTGAAGAGGTAGAAT-ATGCAAGCC-GAGGATCGACCCGATCCC
66 CCGATC-GAAGAGGCAGAATGA-GCAAGCCAG-GGATTGGCCCGATCCC
21669757 ACCTGCGTCC
Statistics
Matches: 209, Mismatches: 52, Indels: 17
0.75 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 1 0.00
158 90 0.43
159 115 0.55
160 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGGCGCTCAA
CCGATCGAAGAGGCAGAATGAGCAAGCCAGGGATTGGCCCGATCCCCCTTACATGTTACCGATCC
TGCTGCCATAACCCTCGGTCCGATCCGA
Found at i:21670224 original size:26 final size:27
Alignment explanation
Indices: 21670173--21670230 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
21670163 CCGATCCGAT
21670173 CTTAGACTGGGAATGAACTCCATATG-
1 CTTAGACTGGGAATGAACTCCATATGC
**
21670199 CTTAGACAT-GGAATGAACTCTGTATGC
1 CTTAGAC-TGGGAATGAACTCCATATGC
21670226 CTTAG
1 CTTAG
21670231 CCAACCCACG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 22 0.79
27 6 0.21
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCATATGC
Found at i:21670489 original size:159 final size:158
Alignment explanation
Indices: 21670199--21670705 Score: 497
Period size: 159 Copynumber: 3.2 Consensus size: 158
21670189 ACTCCATATG
* *
21670199 CTTAGACATGGAATGAACTCTGTATGCCTTAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTTAGCCAACCCACGAAACGA-TGTGCGGGCGCTCAAC
** * * * * * * *
21670264 CGACCGAAGAGGCAGAATACGTAAACCGGGGACCAGCTCGAT-CCTCTCCTGCGTGCTATCAATC
65 CGACCGAAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCGATCCCCCT-CTGCGTGCTACCGATC
* *
21670328 CTGCTGCCGGAACACTCGGTCTGG-TCTGAT
129 CTGCTGCCGCAACCCTCGGTCTGGTTC-GAT
* * * * * * *
21670358 CTTAGAC-TAGGAATGAACTCCGTATGCCTTAGTCAACCCATGAAATGATTGTTCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTTAGCCAACCCACGAAACGA-TGTGCGGGCGCTCAA
* * * *
21670422 CCGACCGAAAAGGCATAATGTGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGGTC
64 CCGACCGAAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTACCGATC
* * * **
21670487 CTGCTGCCACAACCCTCGGTCTGATTGGGG
129 CTGCTGCCGCAACCCTCGGTCTGGTTCGAT
* * * * * *
21670517 CTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCAACAAAACGGATGTGCGGGCACTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTTAGCCAACCCACGAAAC-GATGTGCGGGCGCTCAAC
*** * * * *
21670582 CGGTGGGAGAGGCAGAATGTGCAAGCCGGGGATCCA-CCTGGTCCCCC-CTACGTGCTACCGATC
65 CGACCGAAGAGGCAGAATGTGCAAGCCGGGGAT-CAGCCCGATCCCCCTCTGCGTGCTACCGATC
* *
21670645 CTGCTGCCGTAACCCTCGGTCCGGTTCGAT
129 CTGCTGCCGCAACCCTCGGTCTGGTTCGAT
21670675 CTTAGAC-TGGGAATGAACTCCGTATG-CTTAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTTAG
21670706 ACTGGGGATA
Statistics
Matches: 278, Mismatches: 63, Indels: 16
0.78 0.18 0.04
Matches are distributed among these distances:
157 5 0.02
158 61 0.22
159 203 0.73
160 9 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTTAGCCAACCCACGAAACGATGTGCGGGCGCTCAACC
GACCGAAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTACCGATCCT
GCTGCCGCAACCCTCGGTCTGGTTCGAT
Found at i:21670704 original size:26 final size:26
Alignment explanation
Indices: 21670675--21670727 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21670665 CCGGTTCGAT
*
21670675 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
21670701 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
21670727 C
1 C
21670728 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:21671093 original size:26 final size:26
Alignment explanation
Indices: 21671055--21671107 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21671045 CTGGTCTGAT
*
21671055 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
21671081 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
21671107 C
1 C
21671108 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:21671434 original size:26 final size:26
Alignment explanation
Indices: 21671398--21671450 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21671388 CTGATCCGAT
* *
21671398 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
21671424 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
21671450 C
1 C
21671451 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:21671794 original size:171 final size:171
Alignment explanation
Indices: 21671509--21671914 Score: 473
Period size: 171 Copynumber: 2.4 Consensus size: 171
21671499 GGTCGGTCGA
* ** * * *
21671509 AGAGGCATAATGCGCAAGCTGGGGATC-GCCCTGATCCCCCTCTACGTGCTGTCGAT-CTCGCTA
1 AGAGGCAAAATGCGCAAGCCAGGGATCGGCCC-GATCCCCCCCTGCGTGCTGTCGATCCT-GCTG
** *
21671572 CCGGTCCTGCTGTGACAACACTTGGTCCGACTCGGGTTTAGATATGGAATGAACTCCGTATGCCT
64 CCGGTCCTGCTGCCACAACACTTGGTCCGACTCCGGTTTAGATATGGAATGAACTCCGTATGCCT
** * ***
21671637 AAGTTAACCCACGAAACGAGCGTGCGTACGCTCAGTTGGCCAG
129 AAGCCAACCCACGAAACGAGCGTGCGGACGCTCAACCGGCCAG
* * * *
21671680 AGAGGCAAAATGCGCAAGCCATGGATCGGCTCGATCCCCCCCTGCGTGCTGCCGATCCTGCTGCT
1 AGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCCTGCGTGCTGTCGATCCTGCTGCC
*
21671745 GGTCCTGCTGCCACAACCCTTGGTCCGA-TCCGGTCTTAGA-ATGGGAATGAACTCCGTATGCCT
66 GGTCCTGCTGCCACAACACTTGGTCCGACTCCGGT-TTAGATAT-GGAATGAACTCCGTATGCCT
* * * * *
21671808 AAGCCAACCCATGGAACGAGCGTGTGGGCGCTCAACCGGTCAG
129 AAGCCAACCCACGAAACGAGCGTGCGGACGCTCAACCGGCCAG
* * * *
21671851 AGAGGCAAAATGCTCAAGCCAGGGACCGACCCGGT--CCCCCTGCGTGCTGTCGATCCTGCTGCC
1 AGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCCTGCGTGCTGTCGATCCTGCTGCC
21671914 G
66 G
21671915 TAACCCTCGG
Statistics
Matches: 198, Mismatches: 33, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
169 27 0.14
170 7 0.04
171 159 0.80
172 5 0.03
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (171 bp):
AGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCCTGCGTGCTGTCGATCCTGCTGCC
GGTCCTGCTGCCACAACACTTGGTCCGACTCCGGTTTAGATATGGAATGAACTCCGTATGCCTAA
GCCAACCCACGAAACGAGCGTGCGGACGCTCAACCGGCCAG
Found at i:21672040 original size:157 final size:157
Alignment explanation
Indices: 21671747--21672265 Score: 519
Period size: 159 Copynumber: 3.3 Consensus size: 157
21671737 CTGCTGCTGG
* * * * *
21671747 TCCTGCTGCCACAACCCTTGGTCCGATCCGGTCTTAGAATGGGAATGAACTCCGTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAATTCCGTATGCCTAAGC
* * * * * *
21671812 CAACCCATGGAACGAGCGTGTGGGCGCTCAACCGGTC-AGAGAGGCAAAATGCTCAAGCC-AGGG
66 CAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGA-AGAGGTAAAATGCACAAGCCGA-GG
* *
21671875 ACCGACCCGGTCCCCCTGCGTGCTGTCGA
129 ATCGACCCGGTCCCCCTGCGTGCTATCGA
** * * *
21671904 TCCTGCTGCCGTAACCCTCGGTTCGATCCGATCTTAGACTAAGAATGAATTTCGTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAATTCCGTATGCCTAAGC
* * * ** *
21671969 CAACCCACGAAACGAGTGTGCGGGCGCTGAGCCGGCCGAAGAGGTGTAATGCACAAACCGAGGAT
66 CAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGAAGAGGTAAAATGCACAAGCCGAGGAT
* * *
21672034 CAACCCGATCCCCCTTCGCGTGCTACCGA
131 CGACCCGGTCCCCC-T-GCGTGCTATCGA
* * * ** * *
21672063 T-CT-CATTACCACAACCCTCGGTCTGA-CTGGGGCTTAAAC-ATGGAATGAATTCCCTATGCCT
1 TCCTGC--TGCCACAACCCTCGGTCCGATC-CGATCTTAGACTA-GGAATGAATTCCGTATGCCT
* * **
21672124 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGTAAAATGTGCAAGCCGA
62 AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGAAGAGGTAAAATGCACAAGCCGA
*
21672189 GGATCGGCCCGGTCCCCCCTGCGTGCTATCGA
127 GGATCGACCCGGT-CCCCCTGCGTGCTATCGA
* * * * *
21672221 TCCTCCTGTCGCAACACTCGGTCCGATCCGATCTTAGACTGGGAA
1 TCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAA
21672266 CGAACTCCAT
Statistics
Matches: 286, Mismatches: 63, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
157 116 0.41
158 45 0.16
159 119 0.42
160 6 0.02
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
TCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAATTCCGTATGCCTAAGC
CAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGAAGAGGTAAAATGCACAAGCCGAGGAT
CGACCCGGTCCCCCTGCGTGCTATCGA
Found at i:21672360 original size:13 final size:13
Alignment explanation
Indices: 21672342--21672368 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
21672332 CGGGGGCTCA
21672342 GTCGACCGGAGAG
1 GTCGACCGGAGAG
21672355 GTCGACCGGAGAG
1 GTCGACCGGAGAG
21672368 G
1 G
21672369 CAGAATGCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.48, T:0.07
Consensus pattern (13 bp):
GTCGACCGGAGAG
Found at i:21672869 original size:159 final size:158
Alignment explanation
Indices: 21672485--21672900 Score: 412
Period size: 159 Copynumber: 2.6 Consensus size: 158
21672475 ATCTCCGTAT
21672485 GCTTAGTA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAG-ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
21672549 GCTGGCCAAAGAGGCAGAATGCACAAGCCAGGGATCAGCTCGATCCCTCCTGTGTGCTACCGATC
65 GCCGGCCAAAGAGGCAGAATGCACAAGCCAGGGATCAGATCGATCCCCCCTGCGTGCTACCGATC
* * * *
21672614 CTACTGTCGCAACCCTCGGTCCGGTCTGA
130 CCACTGCCACAACCCTCAGTCCGGTCTGA
* * * * * * *
21672643 TCTTAGAC-TGGGAATGAACTCCGTAAGCATAAGTCAACCCAC-AGAACGAGCGTGCGGGTGTTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGA-AACGAGCGTGCGGGCGCTC
* * * * * * *** *
21672706 AGCCGGTCGAAGAGGCATAATGCACAAGTCAGGGATCGGATTGATCCCCCTCTGCGTGCTGTTGG
64 AGCCGGCCAAAGAGGCAGAATGCACAAGCCAGGGATCAGATCGATCCCCC-CTGCGTGCTACCGA
*
21672771 TCCCGCTGCCACAACCCTCAGTCCGG-CTGA
128 TCCCACTGCCACAACCCTCAGTCCGGTCTGA
* * *
21672801 GGCTTAGACATGGAATGAACTGCC-TATGCCTAAGCCAATCGACGAAACG-GACGTACGGGCGCT
1 -GCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCT
* *** * *
21672864 CAGCCGACTGGAGAGACAGAATGCATAAGCCAGGGAT
63 CAGCCGGCCAAAGAGGCAGAATGCACAAGCCAGGGAT
21672901 TAGCCTGGTC
Statistics
Matches: 205, Mismatches: 44, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 96 0.47
159 102 0.50
160 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCAAAGAGGCAGAATGCACAAGCCAGGGATCAGATCGATCCCCCCTGCGTGCTACCGATCC
CACTGCCACAACCCTCAGTCCGGTCTGA
Found at i:21673657 original size:188 final size:184
Alignment explanation
Indices: 21673334--21673699 Score: 470
Period size: 188 Copynumber: 2.0 Consensus size: 184
21673324 GGGCTTAGAC
*
21673334 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACTGGCGCTCAACCGATCGG
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACTGGCGCTCAACCGATCGG
* * *
21673399 AGAGCTAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTACCAATCCTACTACCG
66 AGAGCTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTACCAATCCTACTACCG
* *
21673464 CAACCCTCAGTCCGA-CTTGATCTTAGACTAGG-AATGAACTTCGTATGCTTCGAT
131 CAACCCTCAATCCGATC-TGATCTTAGACT-GGCAATGAACTCCGTATGCTTCGAT
* *
21673518 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGTCCGGGCGCTCAGCC-A
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTAC-T---GGCGCTCAACCGA
* * ** * *
21673582 GTCGGAGAGGC-AGAATGCGCAAGCCGGGGATCGGCCCGATCCCTCCTGTGTGCTGTCGATCCTG
62 -TCGGAGA-GCTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTACCAATCCTA
* * * *
21673646 CTGCTGCAACCCTCAATTCGATCTGATCTTAGGCTGGCAATGAACTCCGTATGC
125 CTACCGCAACCCTCAATCCGATCTGATCTTAGACTGGCAATGAACTCCGTATGC
21673700 CTAAGTCAAC
Statistics
Matches: 156, Mismatches: 18, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
184 45 0.29
185 1 0.01
187 3 0.02
188 104 0.67
189 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (184 bp):
ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACTGGCGCTCAACCGATCGG
AGAGCTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTACCAATCCTACTACCG
CAACCCTCAATCCGATCTGATCTTAGACTGGCAATGAACTCCGTATGCTTCGAT
Found at i:21673940 original size:159 final size:159
Alignment explanation
Indices: 21673518--21673960 Score: 463
Period size: 159 Copynumber: 2.8 Consensus size: 159
21673508 ATGCTTCGAT
* * *
21673518 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGTCCGGGCGCTCAGCC-A
1 ATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAAC--G-G-GCGTGCGGGCACTCAGCCGA
** * * * **
21673582 GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCTC-CTGTGTGCTGTCGATCCTG
62 -TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGAACGGTCCCCCTCTGCGTGCTGTCGATCCCA
** * *
21673646 CTGCTGCAACCCTCAATTCGATCTGATCTTAGGC
126 CTGCCACAACCCTCAATTCGATCTGAGCTTAGAC
*** *
21673680 -TGGCAATGAACTCCGTATGCCTAAG-TCAACCCACGAAACAATCGTGCGGGCACTGAGCCGATC
1 ATGG-AATGAACTCCGTATGCCTAAGCT-AACCCACGAAACGGGCGTGCGGGCACTCAGCCGATC
* * *
21673743 GAAGAGGCAGAATGCACAAGCCGGGGATC--AACCTGGTCCCCCTCTGCGTGCTGTCGGTCCCAC
64 GGAGAGGCAGAATGCGCAAGCCGGGGATCGGAA-C-GGTCCCCCTCTGCGTGCTGTCGATCCCAC
* *
21673806 TGCCACAACCCTC-AGTCTGA-CTGGGGCTTAGAC
127 TGCCACAACCCTCAATTC-GATCT-GAGCTTAGAC
* *
21673839 ATGGACTGAACTCCCTATGCCTAAGCTAACCCACGAAACGGGCGTGCGGGCACTCAGCCGATCGG
1 ATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGGGCGTGCGGGCACTCAGCCGATCGG
* * * *
21673904 AGAGGCAGAATGTGCAAGTCGGGGATCGGTACGGT-CCCCTCTGCGTGCTATCGATCC
66 AGAGGCAGAATGCGCAAGCCGGGGATCGGAACGGTCCCCCTCTGCGTGCTGTCGATCC
21673961 TGTTGTCGTA
Statistics
Matches: 233, Mismatches: 36, Indels: 28
0.78 0.12 0.09
Matches are distributed among these distances:
157 1 0.00
158 74 0.32
159 116 0.50
160 5 0.02
161 4 0.02
162 33 0.14
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
ATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGGGCGTGCGGGCACTCAGCCGATCGG
AGAGGCAGAATGCGCAAGCCGGGGATCGGAACGGTCCCCCTCTGCGTGCTGTCGATCCCACTGCC
ACAACCCTCAATTCGATCTGAGCTTAGAC
Found at i:21674041 original size:26 final size:26
Alignment explanation
Indices: 21673990--21674042 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21673980 CTGGTTTGAT
*
21673990 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21674016 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21674042 C
1 C
21674043 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21675073 original size:158 final size:155
Alignment explanation
Indices: 21674739--21675079 Score: 364
Period size: 158 Copynumber: 2.2 Consensus size: 155
21674729 AACTCTGTAT
* * * * *
21674739 GCTTAGAGATGGAATGAACTCCGTATGCCTAAGCCAACCCACTAAATGAGCGTGCGCTCAGCCGG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGCTCAGCCGA
* * * *
21674804 CCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCTGCCTCTACGTGCTGTCAGTCCCGC
66 CCGAAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCTCCCTCTACGTGCTGTCAGTCCCGC
*
21674869 TGCCACAACCCTCAGTCCGGCTGGG
131 TGCCACAACCCTCAGTCCGGCTGGA
* * * * *
21674894 GCTTAGACATAGAATGAACTCCCTATGCGTAAGCTAACCCACGAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGT----GCGCTCAG
* * * *
21674959 TCGATCGAAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATC-CCCTCTGCGTGCTGTC-GAT
62 CCGACCGAAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCTCCCTCTACGTGCTGTCAG-T
* * * * * * *
21675022 CCTGCTGTCACAACCTTCGGTCTGGTTTGA
126 CCCGCTGCCACAACCCTCAGTCCGGCTGGA
*
21675052 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
21675080 TTAGACTAGG
Statistics
Matches: 152, Mismatches: 28, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
155 45 0.30
157 2 0.01
158 60 0.39
159 45 0.30
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGCTCAGCCGA
CCGAAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCTCCCTCTACGTGCTGTCAGTCCCGC
TGCCACAACCCTCAGTCCGGCTGGA
Found at i:21675094 original size:26 final size:26
Alignment explanation
Indices: 21675053--21675105 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21675043 CTGGTTTGAT
*
21675053 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
21675079 CTTAGACTAGGTATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
21675105 C
1 C
21675106 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:21675266 original size:185 final size:184
Alignment explanation
Indices: 21674894--21675448 Score: 620
Period size: 184 Copynumber: 3.0 Consensus size: 184
21674884 TCCGGCTGGG
* * *
21674894 GCTTAGACATA-GAATGAACTCCCTATGCGTAAG-CTAACCCACGAAACGGGCGTACGGGCGCTC
1 GCTTAGAC-TAGGAATGAACTCCGTATGCGTAAGTC-AACCCACGAAACGAGCGTGCGGGCGCTC
* ** * * *
21674957 AGTC-GATCGAAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCTCTGCGTGCTGTCGA
64 AGTCGGCT-GAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGA
** * * *
21675021 TCCTGCTGTC-ACAACCTTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCATAT
128 TCCTGCTACCGCCAACCTT-GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
21675078 GCTTAGACTAGGTATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGACTAGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * **
21675143 TCGGCTGGAGAGGCAAAATGCGTAAGCTGGGGATCGGTCCGGTCCCCCCCTGTGTGCTACCGATC
66 TCGGCTGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGT-CCCCCCTGCGTGCTGTCGATC
* * *
21675208 CTGCTACCGCCAGCCTTGGTCTGATCTGATCTTAGTCTGGGAATGAACTCCGTAT
130 CTGCTACCGCCAACCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
21675263 GCTTAGAC-ATGGAATGAACTCCGTATGTGTAAGTGAACCCACGAAACGAGTGTGCGGGTGCTCA
1 GCTTAGACTA-GGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* *
21675327 G-CGGACTGAAGAGGCAGAATGCACAAGCTGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGAT
65 GTCGG-CTGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGAT
* * * * * * *
21675391 CTTGCTACTG-CAACCCTCGGTCCGGTCCGATCATAGGCTGGGAATGAACTCCGTAT
129 CCTGCTACCGCCAA-CCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
21675447 GC
1 GC
21675449 CTAAGTCAAA
Statistics
Matches: 309, Mismatches: 54, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
183 4 0.01
184 151 0.49
185 148 0.48
186 6 0.02
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (184 bp):
GCTTAGACTAGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGGCTGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTACCGCCAACCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:21675770 original size:26 final size:26
Alignment explanation
Indices: 21675740--21675790 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
21675730 CATTTCGATC
*
21675740 TTAGACTGGGAATGAACTCCATATGG
1 TTAGACTAGGAATGAACTCCATATGG
* *
21675766 TTAGACTAGGTATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCATATG
21675791 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGG
Found at i:21676053 original size:196 final size:197
Alignment explanation
Indices: 21675731--21676093 Score: 514
Period size: 196 Copynumber: 1.8 Consensus size: 197
21675721 CCTTCGATCC
* *
21675731 ATTTCGATCTTAGACTGGGAATGAACTCCATATGGTTAGACTAGGTATGAACTCCGTATGCCTAA
1 ATTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAA
* * * * *
21675796 GTCAACCCATGAAACAAGCGTGCGGGCGCTTAGCCGGCTGGAGAGGCAAAATGCGCAAGCTGGGG
66 GTCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGGCTGAAGAGGCAAAATGCACAAGCTGGGG
* * *
21675861 ATCGGCCTGATCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTGCTGCCACCAGCCTCGATC
131 ATCGACCCGATCCCCCCTGCGTGCTGTCAATCCTGCTGCTGGTCCTGCTGCCACCAGCCTCGATC
21675926 TG
196 TG
* * **
21675928 ATTT-GATCTTAGTCTGGGAATGAACTCCGTATGCTTAGAC-ATGGAATGAACTCCGTATGTGTA
1 ATTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTA-GGAATGAACTCCGTATGCCTA
* * * * *
21675991 AGTGAACCCACGAAACGAGTGTGCGGGTGCTCAACCGGCTGAAGAGGCAGAATGCACAAGCTGGG
65 AGTCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGGCTGAAGAGGCAAAATGCACAAGCTGGG
* *
21676056 GATCGACCCGGTCCCCCCTGCGTGCTGTCAATCTTGCT
130 GATCGACCCGATCCCCCCTGCGTGCTGTCAATCCTGCT
21676094 ACCGCAACCC
Statistics
Matches: 144, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
195 1 0.01
196 139 0.97
197 4 0.03
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (197 bp):
ATTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAA
GTCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGGCTGAAGAGGCAAAATGCACAAGCTGGGG
ATCGACCCGATCCCCCCTGCGTGCTGTCAATCCTGCTGCTGGTCCTGCTGCCACCAGCCTCGATC
TG
Found at i:21676933 original size:698 final size:697
Alignment explanation
Indices: 21674749--21677223 Score: 3603
Period size: 697 Copynumber: 3.6 Consensus size: 697
21674739 GCTTAGAGAT
* * * * * * *
21674749 GGAATGAACTCCGTATGCCTAAGCCAACCCACTAAATGAGC-GT---GCGCTCAGCCGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAAACCACGAAATGAGCACTCAGGCGCTGAGCTGACCGGAG
* * * * *
21674810 AGGCAAAATGCGCAAGCCGGGGATC-AGCCCGGTCTGCCTCTACGTGCTGTCAGTCCCGCTGCCA
66 AGGCATAATGCGCAAGCCAGGGATCGAGCCCGGTCCGCCTCTGCATGCTGTCAGTCCCGCTGCCA
* *
21674874 CAACCCTCAGTCCGGCTGGGGCTTAGACATAGAATGAACTCCCTATGCGTAAGCTAACCCACGAA
131 CAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCGTAAGCTAACCCACGAA
* *
21674939 ACGGGCGTACGGGCGCTCAGTCGATC-GAAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATC
196 ACGGGCGTACGGGCGCTCAGCCGACCAG-AGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATC
* * ** *
21675003 CCCTCTGCGTGCTGTCGATCCTGCTGTCACAACCTTCGGTCTGGTTTGATCTTAGACTGGGAATG
260 CCCTCTGCGTGCTATCGATCCTGCTGTCACAACCTTCGATCCAGTTCGATCTTAGACTGGGAATG
21675068 AACTCCATATGCTTAGACTAGGTATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGC
325 AACTCCATATGCTTAGACTAGGTATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGC
* * * *
21675133 GGGCGCTCAGTCGGCTGGAGAGGCAAAATGCGTAAGCTGGGGATCGGTCC-GGTCCCCCCCT--G
390 GGGCACTCAGCCGGCTGGAGAGGCAAAATGCGCAAGCTGGGGATC-GACCTGGTCCCCCCCTGCG
* * *
21675195 TG-TG----CTAC--C-GATCCTGCTACCGCCAGCCTTGGTCTGATCTGATCTTAGTCTGGGAAT
454 TGCTGCATCCTGCTGCTGGTCCTGCTACCGCCAGCCTCGGTCTGATCTGATCTTAGTCTGGGAAT
21675252 GAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGTGTAAGTGAACCCACGAAACGAGTGTG
519 GAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGTGTAAGTGAACCCACGAAACGAGTGTG
* *
21675317 CGGGTGCTC-AGCGGACTGAAGAGGCAGAATGCACAAGCTGGGGATTGGCCCGGTCCCCCCTGCG
584 CGGGTGCTCAACCGG-CTGAAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGGTCCCCCCTGCG
* *
21675381 TGCTGTCGATCTTGCTACTGCAACCCTCGGTCCGGTCCGATCATAGGCTG
648 TGCTGTCGATCTTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGGCTG
* *
21675431 GGAATGAACTCCGTATGCCTAAGTCAAACCACGAAATGAGCACTCAGGCGCTGAACTGACCGAAG
1 GGAATGAACTCCGTATGCCTAAGTCAAACCACGAAATGAGCACTCAGGCGCTGAGCTGACCGGAG
* *
21675496 AGGCATAATACGCAAGCCAGGGATCG-GCCCGGTCCGCCTCTGCATGCTGTCAGTCCCGTTGCCA
66 AGGCATAATGCGCAAGCCAGGGATCGAGCCCGGTCCGCCTCTGCATGCTGTCAGTCCCGCTGCCA
* *
21675560 CAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCGTAAGCTAACCCACAAA
131 CAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCGTAAGCTAACCCACGAA
* * ** *
21675625 ACGGGCGTGCAGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCC
196 ACGGGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCC
* *
21675690 CCTCTGCGTGCTATCAATCCTGCTGTCACAACCTTCGATCCATTTCGATCTTAGACTGGGAATGA
261 CCTCTGCGTGCTATCGATCCTGCTGTCACAACCTTCGATCCAGTTCGATCTTAGACTGGGAATGA
*
21675755 ACTCCATATGGTTAGACTAGGTATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCG
326 ACTCCATATGCTTAGACTAGGTATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCG
* * * *
21675820 GGCGCTTAGCCGGCTGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCTGAT-CCCCCCTGCGTG
391 GGCACTCAGCCGGCTGGAGAGGCAAAATGCGCAAGCTGGGGATCGACCTGGTCCCCCCCTGCGTG
* * * *
21675884 CTGTCGATCCTGCTGCTGGTCCTGCTGCCACCAGCCTCGATCTGATTTGATCTTAGTCTGGGAAT
456 CTG-C-ATCCTGCTGCTGGTCCTGCTACCGCCAGCCTCGGTCTGATCTGATCTTAGTCTGGGAAT
21675949 GAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGTGTAAGTGAACCCACGAAACGAGTGTG
519 GAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGTGTAAGTGAACCCACGAAACGAGTGTG
*
21676014 CGGGTGCTCAACCGGCTGAAGAGGCAGAATGCACAAGCTGGGGATCGACCCGGTCCCCCCTGCGT
584 CGGGTGCTCAACCGGCTGAAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGGTCCCCCCTGCGT
* * *
21676079 GCTGTCAATCTTGCTACCGCAACCCTCGGTCTGGTTCGATCTTAGGCTG
649 GCTGTCGATCTTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGGCTG
21676128 GGAATGAACTCCGTATGCCTAAGTCAAACCACGAAATGAGCACTCAGGCGCTGAGCTGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAAACCACGAAATGAGCACTCAGGCGCTGAGCTGACCGGAG
*
21676193 AGGCATAATGCGCAAGCCAGGGATCGA-TCCGGTCCGCCTCTGCATGCTGTCAGTCCCGCTGCCA
66 AGGCATAATGCGCAAGCCAGGGATCGAGCCCGGTCCGCCTCTGCATGCTGTCAGTCCCGCTGCCA
* *
21676257 CAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCTAACCCATGAA
131 CAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCGTAAGCTAACCCACGAA
* * * *
21676322 ACGGGCGTGCGGGCACTCAGCCGACCAGAGAGGCAGAATGCGTAAGCCAGGGATCAGCTCGATCC
196 ACGGGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCC
* * * * *
21676387 CCTCTACGTGCTGTCGATCCTGCTATCACAACCTTTGATCTAGTTCGATCTTAGACTGGGAATGA
261 CCTCTGCGTGCTATCGATCCTGCTGTCACAACCTTCGATCCAGTTCGATCTTAGACTGGGAATGA
* *
21676452 ACTCCATATGCTTAGACTAGGTATGAACTCTGTATGCCTAAGTCAACCCATGCAACAAGCGTGCG
326 ACTCCATATGCTTAGACTAGGTATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCG
* *
21676517 GGCACTCAGCCAGCTGGAGAGGCAAAATGTGCAAGCTGGGGATCGACCTGGTCCCCCCCTGCGTG
391 GGCACTCAGCCGGCTGGAGAGGCAAAATGCGCAAGCTGGGGATCGACCTGGTCCCCCCCTGCGTG
* * *
21676582 CTGCCAATCCTGCTGCTGGTCCTACTACCGCCAACCTCGGTCTGGTCTGATCTTAGTCTGGGAAT
456 CTG-C-ATCCTGCTGCTGGTCCTGCTACCGCCAGCCTCGGTCTGATCTGATCTTAGTCTGGGAAT
* *
21676647 GAACTCCGTATGCTTAGACATGGAATGAATTCCGTATGTGTAAGTGAACCCACGAAAAGAGTGTG
519 GAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGTGTAAGTGAACCCACGAAACGAGTGTG
* * * * *
21676712 TGGGTGCTCAACCAGCTGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCTTGCGT
584 CGGGTGCTCAACCGGCTGAAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGGTCCCCCCTGCGT
* * *
21676777 GCTATTGATCTTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGGCTG
649 GCTGTCGATCTTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGGCTG
* * *
21676826 GGAATGAACTCCATATGCCTAAGTCAAACCACGAAATGAGCGCTCGGGCGCTGAGCTGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAAACCACGAAATGAGCACTCAGGCGCTGAGCTGACCGGAG
* * * * * *
21676891 AGGCATAATGCGCAAGCCAAGGATCGA-CCTGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCA
66 AGGCATAATGCGCAAGCCAGGGATCGAGCCCGGTCCGCCTCTGCATGCTGTCAGTCCCGCTGCCA
* * * *
21676955 CAACCCTTAGTTTC-ACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
131 CAACCCTCAG-TCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCGTAAGCTAACCCACG-
* ** * * * *
21677019 AAAAGGGCGTACGGGCTTTCAACC-AGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGTCCGG
194 AAACGGGCGTACGGGCGCTCAGCCGA-CCAGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGA
* * * * * * *
21677083 TCCCCCCTGCATGCTATCGATCCTACTGTCGCAACCCTCGATCCGGTTTGATCTTAGACTGGGAA
258 TCCCCTCTGCGTGCTATCGATCCTGCTGTCACAACCTTCGATCCAGTTCGATCTTAGACTGGGAA
* * * * * * *
21677148 TGAACTTCGTATGCTTAGACTGGGGATGACCTCCGTATGCCTAAGTCAACCCATGAAACGAGCAT
323 TGAACTCCATATGCTTAGACTAGGTATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGT
21677213 GCGGGCACTCA
388 GCGGGCACTCA
21677224 ACCGATCAGA
Statistics
Matches: 1617, Mismatches: 151, Indels: 33
0.90 0.08 0.02
Matches are distributed among these distances:
682 38 0.02
683 1 0.00
685 10 0.01
686 356 0.22
687 4 0.00
688 2 0.00
694 3 0.00
696 1 0.00
697 616 0.38
698 412 0.25
699 174 0.11
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (697 bp):
GGAATGAACTCCGTATGCCTAAGTCAAACCACGAAATGAGCACTCAGGCGCTGAGCTGACCGGAG
AGGCATAATGCGCAAGCCAGGGATCGAGCCCGGTCCGCCTCTGCATGCTGTCAGTCCCGCTGCCA
CAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCGTAAGCTAACCCACGAA
ACGGGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCC
CCTCTGCGTGCTATCGATCCTGCTGTCACAACCTTCGATCCAGTTCGATCTTAGACTGGGAATGA
ACTCCATATGCTTAGACTAGGTATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCG
GGCACTCAGCCGGCTGGAGAGGCAAAATGCGCAAGCTGGGGATCGACCTGGTCCCCCCCTGCGTG
CTGCATCCTGCTGCTGGTCCTGCTACCGCCAGCCTCGGTCTGATCTGATCTTAGTCTGGGAATGA
ACTCCGTATGCTTAGACATGGAATGAACTCCGTATGTGTAAGTGAACCCACGAAACGAGTGTGCG
GGTGCTCAACCGGCTGAAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGC
TGTCGATCTTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGGCTG
Found at i:21677161 original size:159 final size:157
Alignment explanation
Indices: 21676731--21677153 Score: 395
Period size: 159 Copynumber: 2.7 Consensus size: 157
21676721 AACCAGCTGA
** * * * *
21676731 AGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCTTGCGTGCTATTGATCTTGCTACCG
1 AGAGGCAGAATGCGCAAGCCAGGGATCGGC-CGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCG
* * * *
21676796 CAACCCTCGGTCCGATCCGATCTTAGGCTGGGAATGAACTCCATATGCCTAAGTCAAACCACGAA
65 CAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAACCACGAA
* * * * *
21676861 ATGAGCGCTCGGGCGCTGAGCTGACCGG
130 AAGAGCGCTCGGGCGCTAACCAGACCAG
* * * * *
21676889 AGAGGCATAATGCGCAAGCCAAGGATCGACCTGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGCC
1 AGAGGCAGAATGCGCAAGCCAGGGATCGGCC-GGTCCCCC-CTGCGTGCTATCGATCCTGCTGCC
* * * * * * ** * *
21676954 ACAACCCTTAGTTTC-ACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCAC
64 GCAACCC-TCGATCCGATTCGATCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAAACCAC
* **
21677017 GAAAA-AGGGCGTACGGGCTTTCAACCAG-CCAG
127 GAAAAGAGCGC-T-CGGGCGCT-AACCAGACCAG
* * *
21677049 AGAGGCAGAATGCGCAAGCCAGGGATCGGTCCGGTCCCCCCTGCATGCTATCGATCCTACTGTCG
1 AGAGGCAGAATGCGCAAGCCAGGGATCGG-CCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCG
* *
21677114 CAACCCTCGATCCGGTTTGATCTTAGACTGGGAATGAACT
65 CAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAACT
21677154 TCGTATGCTT
Statistics
Matches: 206, Mismatches: 49, Indels: 19
0.75 0.18 0.07
Matches are distributed among these distances:
157 1 0.00
158 42 0.20
159 110 0.53
160 48 0.23
161 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
AGAGGCAGAATGCGCAAGCCAGGGATCGGCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCGC
AACCCTCGATCCGATTCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAACCACGAAA
AGAGCGCTCGGGCGCTAACCAGACCAG
Found at i:21677171 original size:26 final size:26
Alignment explanation
Indices: 21677135--21677187 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21677125 CCGGTTTGAT
*
21677135 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21677161 CTTAGACTGGGGATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21677187 C
1 C
21677188 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21677531 original size:26 final size:26
Alignment explanation
Indices: 21677502--21677554 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21677492 CCGATTTGAT
21677502 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21677528 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21677554 C
1 C
21677555 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21677616 original size:367 final size:369
Alignment explanation
Indices: 21676941--21677896 Score: 937
Period size: 367 Copynumber: 2.6 Consensus size: 369
21676931 TGCGTGCTGT
* *
21676941 CGGTCCTGCTGCCACAACCCTTAGTTTCACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
1 CGGTCCTGCTACCACAACCCTTAGTTTCACTGAGGCTTAGACATGGAATGAACTCCCTATGCCTA
* * * **
21677006 AGCCAACCCACGAAAAAGGGCGTACGGGCTTTCAACCAGCCAGAGAGGCAGAATGCGCAAGCCAG
66 AACCAACCCACGAAAAAGAGCGTACGAGCGCTCAACCAGCCAGAGAGGCAGAATGCGCAAGCCAG
* * * *
21677071 GGATCGGTCCGGTCCCCCCTGCATGCTATCGATCCTACTGTCGCAACCCTCGATCCGGTTTGATC
131 GGATCGGCCCGATCCCCCCTACATGCTATCGATCCTACTGTCGCAACCCTCGATCCGATTTGATC
* *
21677136 TTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGACCTCCGTATGCCTAAGTCAACCCA
196 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
** * * *
21677201 TGAAACGAGCATGCGGGCACTCAACCGATCAGAGAGGCCGGTCGGAGAGACATAATGCACAAGCC
261 CAAAACAAGCATGCGGGCACTCAACCGACCAGAGAGGCCGGCCGGAGAGACATAATGCACAAGCC
21677266 GGGGATCAGCCCGATCCCTCTCTGCGTGCTGCCGATCCCGCTAC
326 GGGGATCAGCCCGATCCCTCTCTGCGTGCTGCCGATCCCGCTAC
*
21677310 CGGTCCTGCTACCACAACCCTTAG-TTCAACTGAGGCTTAGACATGGAATGAACTCCGTATGCCT
1 CGGTCCTGCTACCACAACCCTTAGTTTC-ACTGAGGCTTAGACATGGAATGAACTCCCTATGCCT
* ** * * * * * *
21677374 AAACCGATGCACG-AAACGAGCGTGCGAGCGCTCAGCC-GATCGGAGAGGCAGAATGCGCAAGTC
65 AAACCAACCCACGAAAAAGAGCGTACGAGCGCTCAACCAG-CCAGAGAGGCAGAATGCGCAAGCC
* * * * *
21677437 AGGGATTGGCCCGAT-CCCCCTACGTGCTGTCGATCCTGCTG-CTGCATCCCTCGATCCGATTTG
129 AGGGATCGGCCCGATCCCCCCTACATGCTATCGATCCTACTGTC-GCAACCCTCGATCCGATTTG
21677500 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
193 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* * ** * **** *
21677565 CCACAAAACAAGCGTGTGGGTGCTCAACCGGCC-GAAGAGGCCGGCCGGAGAGGTGGAATGCGCA
258 CCACAAAACAAGCATGCGGGCACTCAACCGACCAG-AGAGGCCGGCCGGAGAGACATAATGCACA
* * * * * * * *
21677629 AGCCAGGGATC-GACTCGGTCCC-CCCTGCGTGTTGTCGATCCTGCTGC
322 AGCCGGGGATCAG-CCCGATCCCTCTCTGCGTGCTGCCGATCCCGCTAC
* ** ** ** * *** * ** * *
21677676 TGGTCCTGCTGTCGTAACCCTCGGTCTGGTTCAATCTTTGAC-TGGGAATGAACTCCGTATGCCT
1 CGGTCCTGCTACCACAACCCTTAGTTTCACTGAGGCTTAGACAT-GGAATGAACTCCCTATGCCT
* * * ** * * * *
21677740 AAGCCAACGCACG-AAATGAGCGTGTGAGCGCTC-AGCAGGCTAGAGAGGCATAATGTGCAAGCC
65 AAACCAACCCACGAAAAAGAGCGTACGAGCGCTCAACCA-GCCAGAGAGGCAGAATGCGCAAGCC
* * * * * * * * * **
21677803 -GGAGACCGACCCGATTGCCCCCTACGTGCTGTCAATCCTGCTGTCGTAACCCTCGGTCCGATCC
129 AGG-GATCGGCCCGA-TCCCCCCTACATGCTATCGATCCTACTGTCGCAACCCTCGATCCGATTT
* * *
21677867 GATCTCAGACTGGGAATGAAGTCTGTATGC
192 GATCTTAGACTGGGAATGAACTCCGTATGC
21677897 CTAAGTCAAC
Statistics
Matches: 483, Mismatches: 91, Indels: 27
0.80 0.15 0.04
Matches are distributed among these distances:
365 4 0.01
366 122 0.25
367 171 0.35
368 119 0.25
369 67 0.14
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (369 bp):
CGGTCCTGCTACCACAACCCTTAGTTTCACTGAGGCTTAGACATGGAATGAACTCCCTATGCCTA
AACCAACCCACGAAAAAGAGCGTACGAGCGCTCAACCAGCCAGAGAGGCAGAATGCGCAAGCCAG
GGATCGGCCCGATCCCCCCTACATGCTATCGATCCTACTGTCGCAACCCTCGATCCGATTTGATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
CAAAACAAGCATGCGGGCACTCAACCGACCAGAGAGGCCGGCCGGAGAGACATAATGCACAAGCC
GGGGATCAGCCCGATCCCTCTCTGCGTGCTGCCGATCCCGCTAC
Found at i:21681694 original size:26 final size:26
Alignment explanation
Indices: 21681665--21681717 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21681655 GTTGACTTAG
*
21681665 GCATACAGAGTTTA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
21681691 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21681717 G
1 G
21681718 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21681999 original size:159 final size:157
Alignment explanation
Indices: 21681730--21682193 Score: 459
Period size: 159 Copynumber: 2.9 Consensus size: 157
21681720 CGAACCGGGT
** * * * * * * *
21681730 CGAGGGTTATGGCAGCAGTATCGGCAGCACGTAGGGGGGA-CAAGGCCAATCCTCGGCTTGCGCA
1 CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGA-GCCGATCCCCGACTTGCGCA
* * *
21681794 TTCTGCCTCTCCGACCTG-TCGAGCGCCCGTACGCTCGTTTCATGGGTTAGCTTAGGCATAGGGA
65 TTCTGCCTCTCCGACCGGCT-GAGCGCCCGCACGCTCGTTTCATGGGTT-GCTTAGGCATACGGA
* *
21681858 GTTTATTCTATGTCTAAGCCCCAA-CTGGAC
128 GTTCATTCCATGTCTAAGCCCCAATC-GGAC
* * ** * *
21681888 TGAGGGTTGGGGCAGTGGGATCGACAGCATGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCA
1 CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG-GGGGGACCGAGCCGATCCCCGACTTGCGCA
* * * * * ** *
21681953 TTATGCCTCTCCGACCGGCTTAGCACCCGCACACTCATTTTTTGGGTTGACTTAGGCATACAGAG
65 TTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG-CTTAGGCATACGGAG
* ** **
21682018 TTCATTCCCA-ATCTAAGATCGGATCGGAC
129 TTCATT-CCATGTCTAAGCCCCAATCGGAC
* * * * *
21682047 CGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGGATCGAGCTGATCCCCGGCTTGCACAT
1 CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCAT
* * *
21682112 TCTGCCTCTCCGATCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
66 TCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT-GCTTAGGCATACGGAGT
21682177 TCATTCCATGTCTAAGC
130 TCATTCCATGTCTAAGC
21682194 ATACGGAGTT
Statistics
Matches: 243, Mismatches: 55, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 116 0.48
159 119 0.49
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCAT
TCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCCCCAATCGGAC
Found at i:21682159 original size:158 final size:157
Alignment explanation
Indices: 21681691--21682192 Score: 483
Period size: 158 Copynumber: 3.2 Consensus size: 157
21681681 CCTAGTCTAA
* ** ** * *
21681691 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGGTCGAGGGTTATGGCAGCAGTATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAAACGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
21681756 GCACGTAGGGGGGACAAGGCCAATCCTCGGCTTGCGCATTCTGCCTCTCCGACCTG-TCGAGCGC
66 GCACGCAGGGGGGACGA-GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCT-GAGCGC
*
21681820 CCGTACGCTCGTTTCATGGGTT-AGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGA-CTTAG
** * * * ** * * **
21681849 GCATAGGGAGTTTATT-CTATGTCTAAG-CCCCAACTGGACTGAGGGTTGGGGCAGTGGGATCGA
1 GCATACAGAGTTCATTCCCA-GTCTAAGATCGAAAC-GGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * *
21681912 CAGCATGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTTAGC
64 CAGCACGCAG-GGGGGA-CGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* * * **
21681977 ACCCGCACACTCATTTTTTGGGTTGACTTAG
127 GCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * *
21682008 GCATACAGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAAACGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *
21682073 GCACGCAGGGGGGATCGAGCTGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCC
66 GCACGCAGGGGGGA-CGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * *
21682138 TGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCATGGGTTGACTTAG
*
21682166 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACAGAGTTCATTCCCA-GTCTAAG
21682193 CATACGGAGT
Statistics
Matches: 270, Mismatches: 65, Indels: 18
0.76 0.18 0.05
Matches are distributed among these distances:
157 8 0.03
158 138 0.51
159 116 0.43
160 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAAACGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGACTTAG
Found at i:21682202 original size:26 final size:26
Alignment explanation
Indices: 21682166--21682218 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21682156 GTTGGCTTAG
21682166 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
21682192 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
21682218 G
1 G
21682219 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:21683065 original size:159 final size:158
Alignment explanation
Indices: 21682629--21683377 Score: 794
Period size: 159 Copynumber: 4.7 Consensus size: 158
21682619 TGCGACAGTA
* * * * * *
21682629 GGATCGGCAGCATGCAG-GGGGGACCGGGTCGATCCTCGGCATGCGCATTTTACCTCTTCGGTCG
1 GGATCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCG
* * * * * *
21682693 ACTGAGCACCCTACACAC-CTGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
66 GCTGAGCGCCC-GCACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* *
21682757 AGCCCCAGCCAGACCGAGGGTTGTGGTAGTG
129 AG-CCCAGTCGGACCGAGGGTTGTGGTAGTG
* ** * *
21682788 AGATCTACAACACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTTTGCCTC-TCTGGTC
1 GGATCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTC-GGTC
* * * * * *
21682851 GGTTGAGCGCTCGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
65 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
21682916 GCCCCAGTCGGATCGAGGGTTGTGGTAGTG
130 G-CCCAGTCGGACCGAGGGTTGTGGTAGTG
* * * * * *
21682946 GGATCGGCAGCATGCAGAAGGGGATCAGGCCGATCCCCGGCTTGCGTATTATGCCTCTTCAGTCG
1 GGATCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCG
* * * * *
21683011 GCTCAGCGCCCGCACACTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAA
66 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAA
** * ** *
21683075 GATCAGATCGGACCGAGGGTTGCGACAGTC
130 GCCCAG-TCGGACCGAGGGTTGTGGTAGTG
* * * * *
21683105 GGATCGACAGCACGCA-AGAGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG-C
1 GGATCGGCAGCACGCAGAG-GGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTC
* * * *
21683168 TGGCTAAGCGCCCGCACGCTCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
65 -GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* *
21683233 AGCCCAGTTGGACCGAGGGTTGTGGTAGCG
129 AGCCCAGTCGGACCGAGGGTTGTGGTAGTG
* * *
21683263 GGA-CTGGCAGCACGTAGAGGGGGACTGGGCCGATCCCCGGCTTGTGCATTATGCCTCTTCGGTC
1 GGATC-GGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTC
* * ** *
21683327 GGCTTAGCACCCATACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
65 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
21683378 TATCCCCAGT
Statistics
Matches: 489, Mismatches: 89, Indels: 25
0.81 0.15 0.04
Matches are distributed among these distances:
157 1 0.00
158 202 0.41
159 283 0.58
160 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GGATCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCG
GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CCCAGTCGGACCGAGGGTTGTGGTAGTG
Found at i:21683274 original size:317 final size:316
Alignment explanation
Indices: 21682629--21683394 Score: 873
Period size: 317 Copynumber: 2.4 Consensus size: 316
21682619 TGCGACAGTA
* * ** * * * * * *
21682629 GGATCGGCAGCATGCAG-GGGGGACCGGGTCGATCCTCGGCATGCGCATTTTACCTCTTCGGTCG
1 GGATCGGCAGCACGCAGAAGGGGACTAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCAGTCG
* * * * *
21682693 ACTGAGCACCCTACACAC-CTGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
66 GCTCAGCACCC-ACACACTC-GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTA
* * ** * * *
21682757 AGCCCCAGCCAGACCGAGGGTTGTGGTAGTGAGATCTACAACACGCAGGGGGGACCGGGCCGATC
128 AGCACCAGCCAGACCGAGGGTTGCGACAGTGAGATCGACAACACGCAGAGGGGACCGAGCCGATC
* * * * * * *
21682822 CCCGGCTTGCGCATTTTGCCTCTCTGGTCGGTTGAGCGCTCGCATGCCCATTTCATGGGTTGGCT
193 CCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCGCACGCCCATTTCATAGGTTGGCT
* * *
21682887 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGTAGTG
258 TAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCG
* *
21682946 GGATCGGCAGCATGCAGAAGGGGA-TCAGGCCGATCCCCGGCTTGCGTATTATGCCTCTTCAGTC
1 GGATCGGCAGCACGCAGAAGGGGACT-AGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCAGTC
* * * *
21683010 GGCTCAGCGCCCGCACACTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCTAGTCTAA
65 GGCTCAGCACCCACACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAA
* * * * *
21683075 G-ATCAGATCGGACCGAGGGTTGCGACAGTCG-GATCGACAGCACGCAAGAGGGGATCGAGCCGA
129 GCACCAG-CCAGACCGAGGGTTGCGACAGT-GAGATCGACAACACGC-AGAGGGGACCGAGCCGA
* *
21683138 TCCCCGGCTTGCGCATTCTGCCTCTCCGG-CTGGCTAAGCGCCCGCACGCTCATTTCGTAGGTTG
191 TCCCCGGCTTGCGCATTCTGCCTCTCCGGTC-GGCTAAGCGCCCGCACGCCCATTTCATAGGTTG
*
21683202 GCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGTTGGACCGAGGGTTGTGGTAGCG
255 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCG
* * * * *
21683263 GGA-CTGGCAGCACGTAGAGGGGGACTGGGCCGATCCCCGGCTTGTGCATTATGCCTCTTCGGTC
1 GGATC-GGCAGCACGCAGAAGGGGACTAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCAGTC
* * * * *
21683327 GGCTTAGCACCCATACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAA
65 GGCTCAGCACCCACACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTAA
21683392 GCA
129 GCA
21683395 TACGGAGTTC
Statistics
Matches: 377, Mismatches: 60, Indels: 23
0.82 0.13 0.05
Matches are distributed among these distances:
316 4 0.01
317 223 0.59
318 150 0.40
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (316 bp):
GGATCGGCAGCACGCAGAAGGGGACTAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCAGTCG
GCTCAGCACCCACACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGC
ACCAGCCAGACCGAGGGTTGCGACAGTGAGATCGACAACACGCAGAGGGGACCGAGCCGATCCCC
GGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCGCACGCCCATTTCATAGGTTGGCTTAG
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCG
Found at i:21683397 original size:26 final size:26
Alignment explanation
Indices: 21683366--21683418 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21683356 GTTGACTTAG
*
21683366 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21683392 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21683418 G
1 G
21683419 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21689944 original size:18 final size:18
Alignment explanation
Indices: 21689921--21689962 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
21689911 GACCGGGCTG
21689921 ATCCCCGACTTGCGCATT
1 ATCCCCGACTTGCGCATT
21689939 ATCCCCGACTTGCGCATT
1 ATCCCCGACTTGCGCATT
21689957 ATCCCC
1 ATCCCC
21689963 CCTCGGTCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.17, C:0.43, G:0.14, T:0.26
Consensus pattern (18 bp):
ATCCCCGACTTGCGCATT
Found at i:21690382 original size:26 final size:26
Alignment explanation
Indices: 21690352--21690403 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21690342 GTTGACTTAG
*
21690352 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
21690378 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21690404 TATCAGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21690573 original size:26 final size:26
Alignment explanation
Indices: 21690537--21690589 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21690527 GTTGGCTTAG
21690537 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
21690563 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21690589 G
1 G
21690590 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21691300 original size:26 final size:26
Alignment explanation
Indices: 21691271--21691322 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21691261 GTTGACTTAG
*
21691271 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
21691297 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21691323 TATCAGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21691492 original size:26 final size:26
Alignment explanation
Indices: 21691456--21691508 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21691446 GTTGGCTTAG
21691456 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
21691482 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21691508 G
1 G
21691509 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21692105 original size:920 final size:919
Alignment explanation
Indices: 21690326--21692503 Score: 3731
Period size: 920 Copynumber: 2.4 Consensus size: 919
21690316 TGAGCACCCA
* *
21690326 CACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTC
1 CACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTC
*
21690391 ATTCCCAGTCTAATATCAGACCGGACTGCACGTTATGGTAGCAGGATCGACAGCACGCAGGGGTA
66 ATTCCCAGTCTAATATCAGACCGGACTGCACGTTATGGTAGCAGGATTGACAGCACGCAGGGGTA
21690456 GACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGATTGAGCGCCCACACGCTCGTT
131 GACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGATTGAGCGCCCACACGCTCGTT
21690521 TCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTC
196 TCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTC
21690586 TAAGATTTTGAGCCACGGTGCGCATACTGAGGTCGGGCATGTGTTGGTGCTGCATTTTTTTCGCC
261 TAAGATTTTGAGCCACGGTGCGCATACTGAGGTCGGGCATGTGTTGGTGCTGCATTTTTTTCGCC
*
21690651 CGGGGCACCATCGCCGGAGCATCGTTGGAGCATCACCGGAGAGCCTAACCGACGGCATTGGGGGT
326 CGGGACACCATCGCCGGAGCATCGTTGGAGCATCACCGGAGAGCCTAACCGACGGCATTGGGGGT
21690716 TCCGACGATTGGGGGGCCGAGGGGGTGTGCGTACATGATGTACGATCGGTGCTGGTACTTGGCCC
391 TCCGACGATTGGGGGGCCGAGGGGGTGTGCGTACATGATGTACGATCGGTGCTGGTACTTGGCCC
21690781 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATACCTCCTTAAAGAGCATTTGAGA
456 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATACCTCCTTAAAGAGCATTTGAGA
21690846 TTTTATAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTC
521 TTTTATAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTC
*
21690911 ACAAAATCTTCTCCACTTCGAGTTTTTAATTGAATTGTTTTATGGATGCCAACAAAAATACAGGG
586 ACAAAATCTTCTCCACTTCGAGTTTTTAATTGAATTGTTTTATGCATGCCAACAAAAATACAGGG
* * *
21690976 ATCACCTCTACCAATTTTGGGGACAAACCTCTCTCTAAAAAAATTTTAAAATATCCCGAACCACA
651 ATCACCCCTACCAAATTTGGGGACAAACCTCTCTCTAAAAAAATTTTAAAATATCCCGAAACACA
* *
21691041 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCACCTTGCCACCAAACTTCACATGAAGGC
716 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACAGGTCACCTTGCCACAAAACTTCACATGAAGGC
*
21691106 TTAGGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGA
781 TTAGGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATACGAAGA
*
21691171 TGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTACGCATCCTGCCTCTTTGGTCGGCT
846 TGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTACGCATCCTGCCTCTCTGGTCGGCT
21691236 AAGCGCCCG
911 AAGCGCCCG
21691245 CACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTC
1 CACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTC
*
21691310 ATTCCCAGTCTAATATCAGACCGGACTGCACGTTATGGTAGCAGGATTGACAACACGCAGGGGTA
66 ATTCCCAGTCTAATATCAGACCGGACTGCACGTTATGGTAGCAGGATTGACAGCACGCAGGGGTA
21691375 GACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGATTGAGCGCCCACACGCTCGTT
131 GACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGATTGAGCGCCCACACGCTCGTT
21691440 TCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTC
196 TCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTC
*
21691505 TAAGATTTTGAGCCACGGTGCGCATACTGAGGTTGGGCATGTGTTGGTGCTGCATTTTTTTCGCC
261 TAAGATTTTGAGCCACGGTGCGCATACTGAGGTCGGGCATGTGTTGGTGCTGCATTTTTTTCGCC
21691570 CGGGACACCATCGCCGGAGCATCGTTGGAGCATCACCGGAGAGCCTAACCGACGGCATTGGGGGT
326 CGGGACACCATCGCCGGAGCATCGTTGGAGCATCACCGGAGAGCCTAACCGACGGCATTGGGGGT
21691635 TCCGACGATTGGGGGGGCCGAGGGGGTGTGCGTACATGATGTACGATCGGTGCTGGTACTTGGCC
391 TCCGACGATT-GGGGGGCCGAGGGGGTGTGCGTACATGATGTACGATCGGTGCTGGTACTTGGCC
21691700 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATACCTCCTTAAAGAGCATTTGAG
455 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATACCTCCTTAAAGAGCATTTGAG
21691765 ATTTTATAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGT
520 ATTTTATAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGT
* *
21691830 CACAAAATCTTCTCCACTTTGAGTTTTTAATTGAATTGTTTTGTGCATGCCAACAAAAATACAGG
585 CACAAAATCTTCTCCACTTCGAGTTTTTAATTGAATTGTTTTATGCATGCCAACAAAAATACAGG
* *
21691895 GATCACCCCTACCAAATTTGGGGACAAACCTCTTTCTAAAAAAATTTTAAAATATCCCGAAAGAC
650 GATCACCCCTACCAAATTTGGGGACAAACCTCTCTCTAAAAAAATTTTAAAATATCCCGAAACAC
*
21691960 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAATAGGTCACCTTGCCACAAAACTTCACATGAAGG
715 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAGGTCACCTTGCCACAAAACTTCACATGAAGG
21692025 CTTAGGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATACGAAG
780 CTTAGGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATACGAAG
21692090 ATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTACGCATCCTGCCTCTCTGGTCGGC
845 ATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTACGCATCCTGCCTCTCTGGTCGGC
21692155 TAAGCGCCCG
910 TAAGCGCCCG
* * * * **
21692165 TACGCTTGTTCCGTGGGTTGACGTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTC
1 CACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTC
* * * * * *
21692230 ATTCCTAGTCTAATATCAGACCAGACTGCAAGTTGTGGTAGCAGGACTG-CAGCACGCAGGGGTT
66 ATTCCCAGTCTAATATCAGACCGGACTGCACGTTATGGTAGCAGGATTGACAGCACGCAGGGGTA
** * *
21692294 GACCGGG-TCGATCCCCGGCTTATGCATTTTGCCTCTCCGATCG-CTGAGCG--C-CACGCTCGT
131 GACCGGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGATTGAGCGCCCACACGCTCGT
* *
21692354 TTCATGGGTTGGTTAGCATACGAGTTCATTCCTGTTAAAGCATATAGAGTTCATTCCATGTCTAA
195 TTCGTGGGTT-G---G----C---TT-A-----G-----GCATACAGAGTTCATTCCATGTCTAA
* *
21692419 GCATACGGAGTTCATTCCGCAGTCTAAGA-TTTGAGCCACGGTGCGCATATTGAGCTCGGGCATG
238 GCATACGGAGTTCATTCC-CAGTCTAAGATTTTGAGCCACGGTGCGCATACTGAGGTCGGGCATG
21692483 TGTTGGTGCTGCATTTTTTTC
302 TGTTGGTGCTGCATTTTTTTC
21692504 ACCGGGGCCG
Statistics
Matches: 1193, Mismatches: 41, Indels: 32
0.94 0.03 0.03
Matches are distributed among these distances:
915 18 0.02
916 2 0.00
918 7 0.01
919 446 0.37
920 609 0.51
923 1 0.00
926 2 0.00
927 1 0.00
932 1 0.00
937 96 0.08
938 10 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (919 bp):
CACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTC
ATTCCCAGTCTAATATCAGACCGGACTGCACGTTATGGTAGCAGGATTGACAGCACGCAGGGGTA
GACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGATTGAGCGCCCACACGCTCGTT
TCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTC
TAAGATTTTGAGCCACGGTGCGCATACTGAGGTCGGGCATGTGTTGGTGCTGCATTTTTTTCGCC
CGGGACACCATCGCCGGAGCATCGTTGGAGCATCACCGGAGAGCCTAACCGACGGCATTGGGGGT
TCCGACGATTGGGGGGCCGAGGGGGTGTGCGTACATGATGTACGATCGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATACCTCCTTAAAGAGCATTTGAGA
TTTTATAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTC
ACAAAATCTTCTCCACTTCGAGTTTTTAATTGAATTGTTTTATGCATGCCAACAAAAATACAGGG
ATCACCCCTACCAAATTTGGGGACAAACCTCTCTCTAAAAAAATTTTAAAATATCCCGAAACACA
AAAAGTTTCAAAAATCGTGAAAAATAGAAAACAGGTCACCTTGCCACAAAACTTCACATGAAGGC
TTAGGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATACGAAGA
TGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTACGCATCCTGCCTCTCTGGTCGGCT
AAGCGCCCG
Found at i:21692220 original size:26 final size:26
Alignment explanation
Indices: 21692191--21692242 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21692181 GTTGACGTAG
21692191 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
21692217 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21692243 TATCAGACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21692406 original size:25 final size:26
Alignment explanation
Indices: 21692368--21692436 Score: 90
Period size: 26 Copynumber: 2.7 Consensus size: 26
21692358 TGGGTTGGTT
21692368 AGCATAC-GAGTTCATTCC-TGT-TAA
1 AGCATACAGAGTTCATTCCATGTCT-A
*
21692392 AGCATATAGAGTTCATTCCATGTCTA
1 AGCATACAGAGTTCATTCCATGTCTA
*
21692418 AGCATACGGAGTTCATTCC
1 AGCATACAGAGTTCATTCC
21692437 GCAGTCTAAG
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
24 6 0.15
25 11 0.28
26 21 0.54
27 1 0.03
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (26 bp):
AGCATACAGAGTTCATTCCATGTCTA
Found at i:21693266 original size:26 final size:26
Alignment explanation
Indices: 21693216--21693268 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21693206 GTTGGCTTAG
*
21693216 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
21693242 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
21693268 G
1 G
21693269 ATCAAACAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:21693448 original size:26 final size:26
Alignment explanation
Indices: 21693412--21693464 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21693402 GTTGAATTAG
21693412 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21693438 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21693464 G
1 G
21693465 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21693741 original size:159 final size:159
Alignment explanation
Indices: 21693438--21693939 Score: 437
Period size: 159 Copynumber: 3.2 Consensus size: 159
21693428 CCCAGTCTAA
* * * ** * ** * *
21693438 GCATACGGAGTTCATTCCCA-GTCTAAGAT-CGAACCAGACCAAGGGTTGCGACAGTAGGATCAA
1 GCATACGAAGTTCATT-CCATGTCTAAG-TCCCAACCAGATCAAGGGTTATGGCAACAGGACCGA
* * * * * * *
21693501 CAGCATGCAGGA-GGGACCGAGCCGATCCCCGGCTTCCTCATTCTGCCTTTTCGGCTGACTGAGC
64 CAGCATGCAGAAGGGGATCGGGTCGATCCCCGGCTTCCGCATTCTGCCTTTTCGGCAGACTAAGC
*
21693565 ACCCGCATACCCATTTCGTGGGTTGGCTTAG
129 ACCCGCACACCCATTTCGTGGGTTGGCTTAG
* * * * * * * *
21693596 GTATAGGGAGTTCATTCCATGTCTAAG-CGCCAACCGGATCGAGGGTTATGGTAGCGGGACCGAC
1 GCATACGAAGTTCATTCCATGTCTAAGTC-CCAACCAGATCAAGGGTTATGGCAACAGGACCGAC
* *
21693660 AGCATGCAGAAGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTTCGATCAG-CTAAGC
65 AGCATGCAGAAGGGGATCGGGTCGATCCCCGGCTTCCGCATTCTGCCTTTTCG-GCAGACTAAGC
* * * *
21693724 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 ACCCGCACACCCATTTCGTGGGTTGGCTTAG
**
21693755 GCATACGAAGTTCATTCCATGTCTAAGTCCCAACCAGATCAAGGGTTATGGCAACAGGACCGGTA
1 GCATACGAAGTTCATTCCATGTCTAAGTCCCAACCAGATCAAGGGTTATGGCAACAGGACCGACA
* * * * * * * *
21693820 GCATGCAGAGGGGGATCGGGTCAATCCCCGGCTT-TGCATTATGCCTCTCCGGCCGACTCAGCGA
66 GCATGCAGAAGGGGATCGGGTCGATCCCCGGCTTCCGCATTCTGCCTTTTCGGCAGACTAAGC-A
* * * * * **
21693884 -CCGAACGCTCGTTTTGTGGGTTGATTTAG
130 CCCGCACACCCATTTCGTGGGTTGGCTTAG
21693913 GCATAC-AGAGTTCATTCC-TAGTCTAAG
1 GCATACGA-AGTTCATTCCAT-GTCTAAG
21693940 AACGTGGAGT
Statistics
Matches: 282, Mismatches: 52, Indels: 20
0.80 0.15 0.06
Matches are distributed among these distances:
157 7 0.02
158 120 0.43
159 152 0.54
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (159 bp):
GCATACGAAGTTCATTCCATGTCTAAGTCCCAACCAGATCAAGGGTTATGGCAACAGGACCGACA
GCATGCAGAAGGGGATCGGGTCGATCCCCGGCTTCCGCATTCTGCCTTTTCGGCAGACTAAGCAC
CCGCACACCCATTTCGTGGGTTGGCTTAG
Found at i:21694249 original size:343 final size:343
Alignment explanation
Indices: 21693659--21694310 Score: 748
Period size: 342 Copynumber: 1.9 Consensus size: 343
21693649 GCGGGACCGA
* * * * * *
21693659 CAGCATGCAGAAGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTTCGATCAGCTAAGC
1 CAGCATGCAGAAGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTAAGC
* * * *
21693724 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGTCCCAAC
66 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCAGTCCATGTCTAAGCCCCAAC
** *** ** * * *
21693789 CAGATCAAGGGTTATGGCAACAGGACCGGTAGCATGCAGAGGGGGATCGGGTCAATCCCCGGCTT
131 CAGATCAAAAGTTATGGCAACAGGACCAACAGCACACAGAGGGGGACCGGGCCAATCCCCAGCTT
* * ** *
21693854 TGCATTATGCCTCTCCGGCCGACTCAGCGACCGAACGCTCGTTTTGTGGGTTGATTTAGGCATAC
196 TGCATTATGCCTCTCCGGCAGACTCAACGACCGAACGCTCGTTTCATGGGTTGACTTAGGCATAC
21693919 AGAGTTCATTCC-TAGTCTAAG-A-ACGTGGAGTTCATTCCCAGTCTAAGATAGGATCGGATCGA
261 AGAGTTCATTCCAT-GTCTAAGCATAC--GGAGTTCATTCCCAGTCTAAGATAGGATCGGATCGA
21693981 GGGTTGCGGCAGCTGGATCTG
323 GGGTTGCGGCAGCTGGATCTG
* * *
21694002 CAGCATGCA-AGGGGGACCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCC-GACTGAA
1 CAGCATGCAGAAGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAG-CT-AA
** * *
21694065 -CGCCCGTGCGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCA
64 GCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCAGTCCATGTCTAAGCCCCA
* * ** *
21694129 GCCAGAT-AGAAAGTTATGG-GAGTGAGACCAACAGCACACAGAGGGGGACCGGGCCGATCCCCA
129 ACCAGATCA-AAAGTTATGGCAACAG-GACCAACAGCACACAGAGGGGGACCGGGCCAATCCCCA
* * * * *
21694192 GC-TTGCGTATTCTGCCTCTCCAGTCAG-CTCAACGCCCGTACGCTCGTTTCATGGGTTGGCTTA
192 GCTTTGC--ATTATGCCTCTCC-GGCAGACTCAACGACCGAACGCTCGTTTCATGGGTTGACTTA
* *
21694255 GGCATACGGAGTTCATTCCATGTCTATGCATACGGAGTTCATTCCCAGTCTAAGAT
254 GGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
21694311 TTTGAGCCAC
Statistics
Matches: 255, Mismatches: 44, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
341 8 0.03
342 141 0.55
343 99 0.39
344 5 0.02
345 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (343 bp):
CAGCATGCAGAAGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTAAGC
GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCAGTCCATGTCTAAGCCCCAAC
CAGATCAAAAGTTATGGCAACAGGACCAACAGCACACAGAGGGGGACCGGGCCAATCCCCAGCTT
TGCATTATGCCTCTCCGGCAGACTCAACGACCGAACGCTCGTTTCATGGGTTGACTTAGGCATAC
AGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGGATCGGATCGAGGG
TTGCGGCAGCTGGATCTG
Found at i:21695184 original size:26 final size:26
Alignment explanation
Indices: 21695147--21695199 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
21695137 GTTGGCTTAG
21695147 GCATACAGAGTTCATTCCAT-GTCTAA
1 GCATACAGAGTTCATTCC-TCGTCTAA
21695173 GCATAC-GAAGTTCATTCCTCGTCTAA
1 GCATACAG-AGTTCATTCCTCGTCTAA
21695199 G
1 G
21695200 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTCGTCTAA
Found at i:21695722 original size:159 final size:157
Alignment explanation
Indices: 21695417--21695750 Score: 402
Period size: 159 Copynumber: 2.1 Consensus size: 157
21695407 AGATCGAACT
* * *
21695417 GAACCGAGGGTTGCGGCAGCAGGATCAACAGCACGCATGGGGGACCGGGCCGATCCCCGACTTGC
1 GAACCGAGGGTTGTGGCAGCAGGACCAACAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGC
* * *
21695482 GCATTCTGCCTCTCCGTCGACTGAGCATCAGCACGCCCGTTTCATGGGTTCACTTAGGAATACGG
66 GCATTCTGCCTCTCCGTCGACTAAGCACCAGCACGCCCGTTTCATGCGTTCACTTAGGAATACGG
*
21695547 AGTTCATTCCAAGTCTAAGCCCCAGTC
131 AGTTCATTCCAAGTCTAAGCCCCAGCC
* * * * ** *
21695574 GGACCTAGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGATTGGGCCGATCCCCGACTTT
1 GAACCGAGGGTTGTGGCAGCAGGACCAACAGCACGCA-AGGGGGACCGGGCCGATCCCCGACTTG
* * * * * ** *
21695639 CGCATTCTAG-CTCTCTGATCGGCTAAGCGCCCA-CACGCTCGTTTCGTGCGTTGGCTTAGGCAT
65 CGCATTCT-GCCTCTCCG-TCGACTAAGC-ACCAGCACGCCCGTTTCATGCGTTCACTTAGGAAT
*
21695702 ACGGAGTTCATTCCATGTCTAAGCCCCAGCC
127 ACGGAGTTCATTCCAAGTCTAAGCCCCAGCC
*
21695733 GAACCGAGGGTTATGGCA
1 GAACCGAGGGTTGTGGCA
21695751 ATAGGACTGG
Statistics
Matches: 147, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
157 31 0.21
158 37 0.25
159 77 0.52
160 2 0.01
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.21
Consensus pattern (157 bp):
GAACCGAGGGTTGTGGCAGCAGGACCAACAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGC
GCATTCTGCCTCTCCGTCGACTAAGCACCAGCACGCCCGTTTCATGCGTTCACTTAGGAATACGG
AGTTCATTCCAAGTCTAAGCCCCAGCC
Found at i:21695788 original size:159 final size:158
Alignment explanation
Indices: 21695456--21695821 Score: 367
Period size: 159 Copynumber: 2.3 Consensus size: 158
21695446 AGCACGCATG
* *
21695456 GGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGTCGACTGAGCATCAGCACGCCCG
1 GGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGTCGACTAAGCACCAGCACGCCCG
* * * *
21695521 TTTCATGGGTTCACTTAGGAATACGGAGTTCATTCCAAGTCTAAGCCCCAGTCGGACCTAGGGTT
66 TTTCATGCGTTCACTTAGGAATACGGAGTTCATTCCAAGTCTAAGCCCCAGCCGAACCGAGGGTT
* * * * * * *
21695586 GTGGCAGCGGGACCAGCAGCACGCAGAG
131 ATGGCAACAGGACCAGCAGAACACAAAA
** * * * *
21695614 GGGGATTGGGCCGATCCCCGACTTTCGCATTCTAG-CTCTCTGATCGGCTAAGCGCCCA-CACGC
1 GGGGACCGGGCCGATCCCCGACTTGCGCATTCT-GCCTCTCCG-TCGACTAAGC-ACCAGCACGC
* * ** * *
21695677 TCGTTTCGTGCGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGG
63 CCGTTTCATGCGTTCACTTAGGAATACGGAGTTCATTCCAAGTCTAAGCCCCAGCCGAACCGAGG
* **
21695742 GTTATGGCAATAGGACTGGCAGAACACAAAA
128 GTTATGGCAACAGGACCAGCAGAACACAAAA
* * * ** * *
21695773 GGGGACCGGGTCGATCCTCGGCTCACGCATTATGCCTCTTCGATCGACT
1 GGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCG-TCGACT
21695822 CAATGGCCGA
Statistics
Matches: 165, Mismatches: 39, Indels: 7
0.78 0.18 0.03
Matches are distributed among these distances:
158 37 0.22
159 126 0.76
160 2 0.01
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.22
Consensus pattern (158 bp):
GGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGTCGACTAAGCACCAGCACGCCCG
TTTCATGCGTTCACTTAGGAATACGGAGTTCATTCCAAGTCTAAGCCCCAGCCGAACCGAGGGTT
ATGGCAACAGGACCAGCAGAACACAAAA
Found at i:21696046 original size:26 final size:26
Alignment explanation
Indices: 21696016--21696068 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21696006 GTTGGCTTAG
21696016 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
21696042 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21696068 G
1 G
21696069 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21696263 original size:26 final size:26
Alignment explanation
Indices: 21696213--21696265 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21696203 GTTGACTTAG
* *
21696213 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
21696239 GCATACAGAGTTCATTCCC-AATCTAA
1 GCATACAGAGTTCA-TCCCTAATCTAA
21696265 G
1 G
21696266 ATCTAATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:21696647 original size:158 final size:159
Alignment explanation
Indices: 21696299--21696668 Score: 503
Period size: 158 Copynumber: 2.3 Consensus size: 159
21696289 GTAATAGGAT
* * * *
21696299 CGGTAGCACACAG-GGGGGATCGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTG
1 CGGTAGCACGCAGAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACGGCTG
*
21696363 AGCGCCCGCACACCCATTTTGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCC
66 AGCGCCCGCACACCCATTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCC
* * * *
21696428 AGCTGGACTGAGGGTTGTGGTAGCGGGAC
131 AGCTGGACAGAGGGTTATGGCAGCGAGAC
* * * *
21696457 TGGCAGCACGCAGAGGGGGACTGGA-CCGATCCCCGGCTTGCGCATTCTGCCTCTCC-GACTGCT
1 CGGTAGCACGCAGAGGGGGA-TCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACGGCT
* * *
21696520 GAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
65 GAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCC
*
21696585 TAGCTGGACAGAGGGTTATGGCAGCGAGAC
130 CAGCTGGACAGAGGGTTATGGCAGCGAGAC
* * ** * *
21696615 CGGTAGCATGCAGAGGGGGATCGAGCCAATCCCCATCTTGCGCGTTATGCCTCT
1 CGGTAGCACGCAGAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCT
21696669 TCGGCAGGCT
Statistics
Matches: 183, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
157 3 0.02
158 142 0.78
159 35 0.19
160 3 0.02
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.22
Consensus pattern (159 bp):
CGGTAGCACGCAGAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACGGCTG
AGCGCCCGCACACCCATTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCC
AGCTGGACAGAGGGTTATGGCAGCGAGAC
Found at i:21696761 original size:857 final size:854
Alignment explanation
Indices: 21694989--21697434 Score: 2415
Period size: 857 Copynumber: 2.8 Consensus size: 854
21694979 CCCAATATAA
* *
21694989 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTT-C-GAAGCAGGATCGACA
**** * * ** *
21695054 GCACGCAGG-GGGGACCAAACCGATCCCTGGCCTATGCATTCTGCC-TTTCTGGCCGGTTGAGCG
64 GCACGCAGGAGGGGACTGGGCCGGTCCCTGGCTTGCGCATTCTGCCTTTTC-GGCCGGCTGAGCG
* *
21695117 CCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGAA
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGA
* * * *
21695182 GTTCATTCCTC-GTCTAAGATCAGACTGGATCGATGGTTGCGGCAGCAGGACCAGCAGCAAGATC
193 GTTCATTCC-CAGTCTAAGATCAGACCGGATCGAGGGTTGC-GCAGCAGGACCAGCAGTAGGATC
* * * *
21695246 TGCATCA-G-ACAGGAGG-GAC-CGGTCCGATCC-CTAGCTTACGCATTCTGCCTCTTCGACCAG
256 TGCAGCACGCA-AGG-GGCGACTAGGT-CGATCCTC-AGCTTGCGCATTCTGCCTGTT--ACCA-
***
21695306 CCTCTCTGGCCGGTTGAGTGGCCGCACGCTCGTTTCT-TGGGTTGACTTAGGCATACGAAGTTCA
314 ---CTC-GG-C---TGAGCACCCGCACGCTCGTTT-TGTGGGTTGACTTAGGCATACGAAGTTCA
* * * *
21695370 TCCCTAGTCCAAGCATATGGAGTTCATTCCCAATCTAAGATCGAACTGAACCGAGGGTTGCGGCA
370 TCCCTAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCTAACAG-ACTGAGGGTTGCGGCA
* ** * * * * *
21695435 GCAGGATCAACAGCACGCATGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC-GT
434 GTAGGATCGGCAGCACACAAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGC
* ** * * * ** * * *
21695499 CGACTGAGCATCAGCACGCCCGTTTCATGGGTTCACTTAGGAATACGGAGTTCATTCCAAGTCTA
499 CGGCTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTA
**
21695564 AGCCCCAGTCGGACCTAGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGATTGGGCCGAT
564 AGCCCCAGTCGGA-CTAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGA-TGGGCCGAT
* * * * * * *
21695629 CCCCGACTTTCGCATTCTAG-CTCTCTGATCGGCTAAGCGCCCACACGCTCGTTTCGTGCGTTGG
627 CCCCGGCTTGCGCATTCT-GCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGG
* * *
21695693 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTATGGCAATAGGAC
691 CTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACAGAGGGTTATGGCAAGAGGAC
* * * * * * *
21695758 TGGCAGAACACAAAAGGGGACCGGGTCGATCCTCGGCTCACGCATTATGCCTCTTCGATCGACTC
756 CGGCAGAACACAAAAGGGGACCGAGCCAATCCCCAGCTCACGCATTATGCCTCTTCGAGCGACTC
** * ** *
21695823 AATGGCCGAATGCTCATTTTGTGGGTTGACTTAG
821 AATCACCGAACGCTCATTTCATGGGTTGACGTAG
* * ** **
21695857 GCATACGGAGTTCTTTCCCAGTCTAAGATCGGACTAGACCAAGGGTTGCGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTT-CGA-AGCAGGATCGACA
* * * * ** *
21695922 GCACGTAGGATGGGACTGGGTCGGTCCCCGGCTTGCGCATTCTGCCTTTTCGATCGGCTGAGTGC
64 GCACGCAGGAGGGGACTGGGCCGGTCCCTGGCTTGCGCATTCTGCCTTTTCGGCCGGCTGAGCGC
* * *
21695987 CCACACGTTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAG
129 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAG
*
21696052 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGACCAGCAGTAGGATCTG
194 TTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGC-GCAGCAGGACCAGCAGTAGGATCTG
* * * *
21696117 CAGCACGCAAGGGGCGACTAAGTCGATCCTCAGCTCGTGCATTCTGCCT-TT-CCAATCGGCTGA
258 CAGCACGCAAGGGGCGACTAGGTCGATCCTCAGCTTGCGCATTCTGCCTGTTACCACTCGGCTGA
* * * * *
21696180 GCACCCGTACGCTCATTTTGTGTGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATAC
323 GCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCTAGTCTAAGCATAT
* * * * *
21696245 AGAGTTCATTCCCAATCTAAGATCTAATCAGACTGAGGGTCGCGGTAATAGGATCGGTAGCACAC
388 GGAGTTCATTCCCAATCTAAGATCTAA-CAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACAC
* * * *
21696310 AGGGGGGATCGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACA
452 AAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACA
* * * *
21696375 CCCATTTTGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACTGA
517 CCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACT-A
* *
21696439 GGGTTGTGGTAGCGGGACTGGCAGCACGCAGAGGGGGACTGGACCGATCCCCGGCTTGCGCATTC
580 GGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGA-TGGGCCGATCCCCGGCTTGCGCATTC
* * *
21696504 TGCCTCTCCGA-CTGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTC
644 TGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTC
* * * * * * ** * *
21696568 ATTCCATGTCTAAGCCCTAGCTGGACAGAGGGTTATGGC-AGCGAGACCGGTAGCATGCAGAGGG
709 ATTCCATGTCTAAGCCCCAGCCGAACAGAGGGTTATGGCAAGAG-GACCGGCAGAACACAAAAGG
* * ** * * *
21696632 GGATCGAGCCAATCCCCATCTTGCGCGTTATGCCTCTTCG-GCAGGCTCAA-CACTCGAACGTTC
773 GGACCGAGCCAATCCCCAGCTCACGCATTATGCCTCTTCGAGC-GACTCAATCAC-CGAACGCTC
21696695 ATTTCATGGGTTGACGTAG
836 ATTTCATGGGTTGACGTAG
* *
21696714 GCATACGGAGTTCATTCCCAGTCGAAGATTGGACCGGACTGAGGGTT-GAAGCACTTGGATTGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTCGAAGCA---GGATCGAC
* * * * * * ** *
21696778 ATCACACAGGAGGGGATTGGGCCGGTCCCTGGCTTGCGCATTCTACCTCTCCGGCCTACTGAGCA
63 AGCACGCAGGAGGGGACTGGGCCGGTCCCTGGCTTGCGCATTCTGCCTTTTCGGCCGGCTGAGCG
* * *
21696843 CCCGCACGCTCGTTCCGTGGGTTGGATTAGG----C--A--T-A---C--G---AAG--TACGGA
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGA
* * *
21696889 GTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGACCAGCAATAGGATC-
193 GTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCG-CAGCAGGACCAGCAGTAGGATCT
* * *
21696953 GATAGCACGC-A-GGGCGGA-TCAGGTTGATCCAT-AGCTTGCACATTCTGCCTCTTTGGTTGAC
257 G-CAGCACGCAAGGGGC-GACT-AGGTCGATCC-TCAGCTTGCGCATTCTG-C-C--T-GTT-A-
* * ** * * * *
21697014 CTCTCTGGCCGGCTGAGCACCCGCACGATCGTTACGTGGGCTGAGTTAGGCATACAAAGTTCTTC
311 C-CACT---CGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATC
* * **
21697079 CCCAGTCTAAGCACATGGAGTTCATTCCCAATCTAAGATCTAACAGGA-TCGAGGGTTAAGGCAG
372 CCTAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCTAACA-GACT-GAGGGTTGCGGCAG
* * * * *
21697143 TAGGATCGGCAGCATACAAGGGGGACCGGGTCGGTCCCCGGCTTGCACTTTCTGCCTCTCCGGCT
435 TAGGATCGGCAGCACACAAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCC
* *
21697208 GGCTGAGTGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCCTAAGGAGTTCATTCCATGTCTAA
500 GGCTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
* * * *
21697273 GCCCCAGTCGGACCAAGGGTTGGGGCAACGGGACTGGCAGCACGCAGAGGGGGATCGGGTCGATC
565 GCCCCAGTCGGA-CTAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGAT-GGGCCGATC
* * * *
21697338 CCCGGCTTGCGCATTCTACCTCTCCGACCGGTTGAGCGCTCGCACGCTCGTTTCATGGGTTGGCT
628 CCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* *
21697403 TAGGCATACAAGAGTTCATTCAATGTCTAAGC
693 TAGGCATA-AGGAGTTCATTCCATGTCTAAGC
21697435 ATACGGAGTT
Statistics
Matches: 1308, Mismatches: 224, Indels: 108
0.80 0.14 0.07
Matches are distributed among these distances:
836 5 0.00
837 25 0.02
838 73 0.06
839 1 0.00
840 3 0.00
841 1 0.00
843 3 0.00
845 1 0.00
846 1 0.00
847 2 0.00
848 1 0.00
849 5 0.00
850 288 0.22
851 43 0.03
852 20 0.02
853 1 0.00
854 4 0.00
855 2 0.00
856 5 0.00
857 424 0.32
858 132 0.10
860 1 0.00
861 2 0.00
862 2 0.00
866 3 0.00
867 1 0.00
868 63 0.05
869 160 0.12
870 32 0.02
871 4 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (854 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTCGAAGCAGGATCGACAGC
ACGCAGGAGGGGACTGGGCCGGTCCCTGGCTTGCGCATTCTGCCTTTTCGGCCGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGCAGCAGGACCAGCAGTAGGATCTGCAG
CACGCAAGGGGCGACTAGGTCGATCCTCAGCTTGCGCATTCTGCCTGTTACCACTCGGCTGAGCA
CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCTAGTCTAAGCATATGGA
GTTCATTCCCAATCTAAGATCTAACAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACACAAGG
GGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACACCCG
TTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTAGGGTTG
TGGCAGCGGGACTGGCAGCACGCAGAGGGGGATGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT
CCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCAT
GTCTAAGCCCCAGCCGAACAGAGGGTTATGGCAAGAGGACCGGCAGAACACAAAAGGGGACCGAG
CCAATCCCCAGCTCACGCATTATGCCTCTTCGAGCGACTCAATCACCGAACGCTCATTTCATGGG
TTGACGTAG
Found at i:21698170 original size:26 final size:26
Alignment explanation
Indices: 21698141--21698193 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21698131 GTTGACTTAG
21698141 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
21698167 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21698193 G
1 G
21698194 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21698670 original size:26 final size:26
Alignment explanation
Indices: 21698641--21698693 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21698631 GGTGGCTTAG
*
21698641 GCATATGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
21698667 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21698693 G
1 G
21698694 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21698882 original size:26 final size:26
Alignment explanation
Indices: 21698852--21698904 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21698842 GTTGACTTAG
21698852 GCATAAGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
* * *
21698878 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
21698904 G
1 G
21698905 ATCAAATTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:21699179 original size:159 final size:159
Alignment explanation
Indices: 21698949--21699315 Score: 379
Period size: 159 Copynumber: 2.3 Consensus size: 159
21698939 GGTAGCACGT
* * *
21698949 AGGGGTGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCACACG
1 AGGGG-GATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTCAACACCCACACG
* * * * * *
21699014 CCCGTTTTGTGGGTT-AGCTTAGGCATAGGGAGTTCATTCC-ATGTCTAAGCCCCAG-CCGGACC
65 CCCGTTTCGTGGGTTGA-CTTAGGCAAACGGAGTTCAGTCCTA-GTCTAAG-ACCAGACCAGACC
21699076 GAGGGTTACGGCAGC--GAGTCTGACAGCACGCAG
127 GAGGGTTACGGCAGCAGGA-T-TGACAGCACGCAG
* *** **
21699109 AGGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGA-CTGGCTCAACGTTCGTACG
1 AGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATC-GGCTCAACACCCACACG
* * *
21699173 CTCGTTTCGTGGGTTGACTTAGGCAAACGGAGTTCAGTCCTAGTCTAAGATCAGACCAGACTGAG
65 CCCGTTTCGTGGGTTGACTTAGGCAAACGGAGTTCAGTCCTAGTCTAAGACCAGACCAGACCGAG
* *
21699238 GGTTGCGGCAGCAGGATTGACAGCATGCAG
130 GGTTACGGCAGCAGGATTGACAGCACGCAG
* * * * * * *
21699268 -GCGAGACCGGGTCAATCCCCAGCTTGCGCATTCTACCTCTCCGGTCGG
1 AGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGG
21699316 TTGAGTGCCC
Statistics
Matches: 172, Mismatches: 28, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
158 42 0.24
159 120 0.70
160 8 0.05
161 2 0.01
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.22
Consensus pattern (159 bp):
AGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTCAACACCCACACGC
CCGTTTCGTGGGTTGACTTAGGCAAACGGAGTTCAGTCCTAGTCTAAGACCAGACCAGACCGAGG
GTTACGGCAGCAGGATTGACAGCACGCAG
Found at i:21699383 original size:26 final size:26
Alignment explanation
Indices: 21699353--21699431 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
21699343 GTTGGCTTAG
21699353 GCATACCGAGTTCATTCCCTGTCTAA
1 GCATACCGAGTTCATTCCCTGTCTAA
21699379 GCATACCGAGTTCATTCCCTGTCTAA
1 GCATACCGAGTTCATTCCCTGTCTAA
* *
21699405 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCTGTCTAA
21699431 G
1 G
21699432 ATTAGACTGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCTGTCTAA
Found at i:21699710 original size:13 final size:13
Alignment explanation
Indices: 21699692--21699716 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21699682 CGCATTATGC
21699692 CTCTCCGGCCGAA
1 CTCTCCGGCCGAA
21699705 CTCTCCGGCCGA
1 CTCTCCGGCCGA
21699717 CTGAGTGCTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.48, G:0.24, T:0.16
Consensus pattern (13 bp):
CTCTCCGGCCGAA
Found at i:21700086 original size:158 final size:158
Alignment explanation
Indices: 21699780--21700279 Score: 348
Period size: 158 Copynumber: 3.2 Consensus size: 158
21699770 TCCAGTCTAA
* * * * ** *
21699780 GCATATGAAGTTCATTCCCA-GTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGTAGGATCGAC
1 GCATACGAAGTTCATT-CCATGTCTAACATCAGACCAGACCAAGGGATAAGGCAGCAGGATCGAC
* * * *** * * ** * * * *
21699844 AGCACGCAGGAGGGA-CTGAATAGATCCTCGGCTTGTGCATTCTACCTCT-CTAGCCGACTGAGC
65 AACACACAGGGGGGATC-GAGCCGATCCCCGACTTGCACATTATGCCTCTCCGA-CCGGCTGAGC
* * * *
21699907 GCCCGTACACCCATTTCGTGGGTTGGCTTAG
128 ACCCGAACGCTCATTTCGTGGGTTGGCTTAG
* * ** *
21699938 GCATACGAAGTTCATTCCATGTCTAAC-CCTAG-CCAGACCGAGGGATGTGGCAGCGGGA-CTGA
1 GCATACGAAGTTCATTCCATGTCTAACATC-AGACCAGACCAAGGGATAAGGCAGCAGGATC-GA
* *** * *
21700000 CAACACACAGAGGGGGATCGGGCCGATCCCCGACTTGTGTATTATGCCTCTCCGATCGGCTTAGC
64 CAACACACAG-GGGGGATCGAGCCGATCCCCGACTTGCACATTATGCCTCTCCGACCGGCTGAGC
** *
21700065 ACCCGAACGCTCATTTCGTGGGTTAACTTTG
128 ACCCGAACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * * * *
21700096 ACAAACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCAAGGGTTAAGGTAGCAGGATCGAC
1 GCATACGAAGTTCATT-CCATGTCTAACATCAGACCAGACCAAGGGATAAGGCAGCAGGATCGAC
* ** * * * * *
21700160 AGCACGTAGGGGGGATCGAGCCGATCCCCGACTTGCACATTCTGCCTCTTCGGCCTGCTGAGCGC
65 AACACACAGGGGGGATCGAGCCGATCCCCGACTTGCACATTATGCCTCTCCGACCGGCTGAGCAC
* * * *
21700225 CCGCACGTTCGTTTTGTGGGTTGGCTTAG
130 CCGAACGCTCATTTCGTGGGTTGGCTTAG
21700254 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
21700280 GCATACGGAG
Statistics
Matches: 261, Mismatches: 70, Indels: 22
0.74 0.20 0.06
Matches are distributed among these distances:
156 1 0.00
157 37 0.14
158 188 0.72
159 34 0.13
160 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCATGTCTAACATCAGACCAGACCAAGGGATAAGGCAGCAGGATCGACA
ACACACAGGGGGGATCGAGCCGATCCCCGACTTGCACATTATGCCTCTCCGACCGGCTGAGCACC
CGAACGCTCATTTCGTGGGTTGGCTTAG
Found at i:21700304 original size:26 final size:26
Alignment explanation
Indices: 21700254--21700306 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21700244 GTTGGCTTAG
*
21700254 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
21700280 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
21700306 G
1 G
21700307 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:21700776 original size:158 final size:156
Alignment explanation
Indices: 21700525--21700989 Score: 531
Period size: 158 Copynumber: 2.9 Consensus size: 156
21700515 GATCTAATGG
* * ** * * *
21700525 ACCGAAGGTTGCGGCAGCAGGATTGGCAGCACGGAGGGGGGATCGGGCCGATCCCC-AGCTTGCG
1 ACCGAGGGTTGCGGCACCAGGAACGACAACACGCAGGGGGGATCGGGCCGATCCCCGA-CTTGCG
** * * *
21700589 CATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGG
65 CATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCATTT-ATGGGTTGGCTTAGGCATACGG
*
21700654 AGTTCATTCCATGTCTAAGCCCCATCGA
129 AGTTCATTCCATGTCTAAGCCACATCGA
* * * * *
21700682 ACCGAGGGTTGTGGCAGCGGGAACGACAACACTCAGAGGGGGACCGGGCCGATCCCCGACTTGCG
1 ACCGAGGGTTGCGGCACCAGGAACGACAACACGCAG-GGGGGATCGGGCCGATCCCCGACTTGCG
* * * * * *
21700747 CATTATGCCTCTCTGGCCGACTCAGCGCCCGAACGCTCATTTAGTGGGTTGACTTAGGCATACGA
65 CATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTA-TGGGTTGGCTTAGGCATACGG
* * *
21700812 AGTTCATTCCCA-GTCTAAGATCAGATCGG
129 AGTTCATT-CCATGTCTAAG-CCACATCGA
* * * * *
21700841 ACCGAGGGTTGCGGTACCAGGATCGACAGCACGCAGGAGGGATCGGGTC-ACTCCCCGACTTGCG
1 ACCGAGGGTTGCGGCACCAGGAACGACAACACGCAGGGGGGATCGGGCCGA-TCCCCGACTTGCG
**
21700905 CATTCTGCCTCTCTGATCGGCTGAGCGCCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGG
65 CATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCA-TTTATGGGTTGGCTTAGGCATACGG
21700970 AGTTCATTCCATGTCTAAGC
129 AGTTCATTCCATGTCTAAGC
21700990 ATACAGAGTT
Statistics
Matches: 256, Mismatches: 44, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
157 32 0.12
158 182 0.71
159 42 0.16
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (156 bp):
ACCGAGGGTTGCGGCACCAGGAACGACAACACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGC
ATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTATGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCCACATCGA
Done.