Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 209 of 402
Found at i:21700998 original size:26 final size:26
Alignment explanation
Indices: 21700962--21701014 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21700952 GTTGGCTTAG
*
21700962 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
21700988 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21701014 G
1 G
21701015 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21701162 original size:26 final size:26
Alignment explanation
Indices: 21701132--21701184 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21701122 GTTGACTTAG
* *
21701132 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
*
21701158 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
21701184 G
1 G
21701185 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCAAGTCTAA
Found at i:21701622 original size:175 final size:175
Alignment explanation
Indices: 21701325--21701652 Score: 442
Period size: 175 Copynumber: 1.9 Consensus size: 175
21701315 GCAGCGAGAC
* * *
21701325 CGACAGCATGCAGAGGGGGATCAGGCCAATCCCCAGCTTGCGCATTCTACCTCTCCGACCTGCTG
1 CGACAGCATGCAGAGGGGGACCAAGCCAATCCCCAGCTTGCGCATTCTACCTCTCCGACCTGCTA
* * * * * * *
21701390 AGCGCTCGCACGCTTGTTTCGTGGGTTGGCTTAGGCTTACGGAGTTTATTCCATGTCTAATCATA
66 AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAGCATA
*
21701455 CAGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGACAACAGGAT
131 CAGAGTTCATTCCCAATCTAAGAGTTTGAGCCACGACAACAGGAT
** ** * * * **
21701500 CGACAGCATGCAGAGGGGGACCAAGCCGGTCCTTAGCTTGTGCATTTTGCCTCTCCGGTC-GACT
1 CGACAGCATGCAGAGGGGGACCAAGCCAATCCCCAGCTTGCGCATTCTACCTCTCCGACCTG-CT
*
21701564 AAGCTCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAGCAT
65 AAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAGCAT
*
21701629 ACGGAGTTCATTCCCAATCTAAGA
130 ACAGAGTTCATTCCCAATCTAAGA
21701653 TCAGATCAGA
Statistics
Matches: 130, Mismatches: 22, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
174 1 0.01
175 129 0.99
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (175 bp):
CGACAGCATGCAGAGGGGGACCAAGCCAATCCCCAGCTTGCGCATTCTACCTCTCCGACCTGCTA
AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAGCATA
CAGAGTTCATTCCCAATCTAAGAGTTTGAGCCACGACAACAGGAT
Found at i:21702142 original size:26 final size:26
Alignment explanation
Indices: 21702113--21702165 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21702103 GTTGGCTTCG
*
21702113 GCATACGGCGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
21702139 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
21702165 G
1 G
21702166 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:21702519 original size:26 final size:26
Alignment explanation
Indices: 21702480--21702532 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21702470 GTTGACTTAG
21702480 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
21702506 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21702532 G
1 G
21702533 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21702531 original size:367 final size:353
Alignment explanation
Indices: 21702006--21702848 Score: 831
Period size: 367 Copynumber: 2.4 Consensus size: 353
21701996 AGGGTTGCAG
* * * * * *
21702006 CAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCTTGGCTTGCTCATTCTGCCTCTTCA
1 CAGCAGGATCGACAGCACGAAAGGGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTTCA
* * * * * *
21702071 ACCGGCTGAGCGCCCGTACGCTCATTTTGTGGGTTGGCTTCGGCATACGGCGTTCATTCCATGTC
66 ACCGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTC
*
21702136 TAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGA-TCGAGGGTTGCAGTAGCAGGACC
131 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACT-GAGGGTT---GT----GG---
* * *
21702200 AATAACAGGATCGACAGCACGCAGGGGGGATCTGGTCGATCCCCGACTTGCGCATTCTGCCTCTC
185 --TAACAGGATCGACAGCACGCA-GGGGGAACGGGCCGATCCCCGACTTGCGCATTCTGCCTCTC
* * * *
21702265 CGGTCGGTTGAGCACCCGCACGCTCAT-TTT-GTGGGTTGGCATAGGCAT-GCGGAGTTCATTCC
247 CGATCGGCTGAACACCCGCACGC-C-TGTTTCATGGGTTGGCATAGGCATAG-GGAGTTCATTCC
* * *
21702327 ATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAAGATCGA
309 ATGTCTAAGCCCCAACCGGAACAACGGTTGTGGCAGCAAGATCGA
* * * * *
21702372 CAGCAGGATCGACAGTATGAAAAGGGGGACCGGGCTAATCCCTGGCTTGCGCATTATGCGTTTTC
1 CAGCAGGATCGACAGCACG-AAAGGGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTTC
*** * *
21702437 GGTCGGCTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-G
65 AACCGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAT-CCCATG
* * *
21702501 TCTAAGCATACGGATTTCATTCCCAGTCTAAGATCAGATTGGACTGAGGGTTGTGGTAGCAGGAT
129 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGGTAACAGGAT
* * * *
21702566 CGACAGCACGCAGGGGGAACGGGCCGATCCCCGGCTTGCGTATTCTGCCTTTCTGATCGGCTGAA
194 CGACAGCACGCAGGGGGAACGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAA
** * * *
21702631 TGCCCGCATGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
259 CACCCGCACGCCTGTTTCATGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA
* *
21702696 CCGGAACAACGGTTGTGGCAG--TG--GGA
324 CCGGAACAACGGTTGTGGCAGCAAGATCGA
* * *
21702722 C--C-GG-T----AGCACGCAGAGGGGGACCGGGCCGATCCTTGGCTTGCGCATTATGCCTCTTC
1 CAGCAGGATCGACAGCACG-AAAGGGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTTC
** * * * * * * * *
21702779 GGCTGGCTCAACGCCCGAACGCTCGTTTCATGCGTTGACTTAGGCATACGGAGTTCATTCCCA-G
65 AACCGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCA-TCCCATG
21702843 TCTAAG
129 TCTAAG
21702849 ATCAGACCGG
Statistics
Matches: 405, Mismatches: 65, Indels: 38
0.80 0.13 0.07
Matches are distributed among these distances:
342 102 0.25
343 1 0.00
346 1 0.00
347 2 0.00
348 1 0.00
350 3 0.01
352 2 0.00
353 4 0.01
354 111 0.27
355 21 0.05
360 2 0.00
364 2 0.00
366 17 0.04
367 132 0.33
368 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (353 bp):
CAGCAGGATCGACAGCACGAAAGGGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTTCA
ACCGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGGTAACAGGATCG
ACAGCACGCAGGGGGAACGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAACA
CCCGCACGCCTGTTTCATGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACC
GGAACAACGGTTGTGGCAGCAAGATCGA
Found at i:21702985 original size:158 final size:157
Alignment explanation
Indices: 21702506--21702997 Score: 472
Period size: 159 Copynumber: 3.1 Consensus size: 157
21702496 CCCAGTCTAA
* ** *
21702506 GCATACGGATTTCATTCCCAGTCTAAGATCAGATTGGACTGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
* * * * ** *
21702571 GCACGCA-GGGGGAACGGGCCGATCCCCGGCTTGCGTATTCTGCCTTTCTGATCGGCTGAATGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCC-GCTTGCGCATTCTGCCTCTCCGGCCGGCTGAACGCC
* *
21702635 CGCATGC-CTGTTTCATGGGTTGGCTTAG
130 CGCACGCTC-GTTTCATGAGTTGGCTTAG
* ** * * ** *
21702663 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGAAC-AACGGTTGTGGCAGTGGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGG-ACTGAGGGTTGTGGCAGCAGGATCG
** ** * * * *
21702725 GTAGCACGCAGAGGGGGACCGGGCCGATCCTTGGCTTGCGCATTATGCCTCTTCGGCTGGCTCAA
63 ACAGCACGCAG-GGGGGACCGGGCCGATCC-CCGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAA
* * *
21702790 CGCCCGAACGCTCGTTTCATGCGTTGACTTAG
126 CGCCCGCACGCTCGTTTCATGAGTTGGCTTAG
** *
21702822 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
* * * * * *
21702887 GCACGCAGGGGGGACCGGGCCGGTCCCCACATTGTGCATTCTACCTCTCCGGCCAGCTGAGCGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGC-TTGCGCATTCTGCCTCTCCGGCCGGCTGAACGCC
* * *
21702952 CGCACGCTCATTTCTTAAGTTGGCTTAG
130 CGCACGCTCGTTTCATGAGTTGGCTTAG
*
21702980 GCATACGAAGTTCATTCC
1 GCATACGGAGTTCATTCC
21702998 ATGTCTAGGC
Statistics
Matches: 261, Mismatches: 63, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
156 3 0.01
157 48 0.18
158 92 0.35
159 114 0.44
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAACGCCC
GCACGCTCGTTTCATGAGTTGGCTTAG
Found at i:21703017 original size:26 final size:25
Alignment explanation
Indices: 21702977--21703029 Score: 88
Period size: 26 Copynumber: 2.1 Consensus size: 25
21702967 TAAGTTGGCT
21702977 TAGGCATACGAAGTTCATTCCATGTC
1 TAGGCATACGAAGTTCATTCCA-GTC
*
21703003 TAGGCATACGGAGTTCATTCCAGTC
1 TAGGCATACGAAGTTCATTCCAGTC
21703028 TA
1 TA
21703030 AAATCAGACC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 5 0.19
26 21 0.81
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (25 bp):
TAGGCATACGAAGTTCATTCCAGTC
Found at i:21703230 original size:510 final size:512
Alignment explanation
Indices: 21702561--21703515 Score: 1319
Period size: 510 Copynumber: 1.9 Consensus size: 512
21702551 TTGTGGTAGC
* * * * * *
21702561 AGGATCGACAGCACGCAGGGGGAACGGGCCGATCCCCGGCTTGCGTATTCTGCCTTTCTGATCGG
1 AGGATCGACAGCACGCAGGGGGAACGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCTGACCAG
* ** * *
21702626 CTGAATGCCCGCATGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
66 ATGAACACCCGCATGCCCGATTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
* ** * * *
21702691 CCCAGCCGGAACAACGGTTGTGGCAGTGGGACCGGTAGCACGCAGAGGGGGACCGGGCCGATCCT
131 CCCAACCGGAACAACGGTTGTGGCAGTGGGACCGACAGCACACAGAGGGGGACCAGGCCGATCCC
** * *
21702756 TGGCTTGCGCATTATGCCTCTTCGGCTGGCTCAACGCCCGAACGCTCGTTTCATGCGTTGACTTA
196 CAGCTTGCGCATTATGCCTCTTCGGCTGGCTCAACGCCCGAACGCTCATTTAATGCGTTGACTTA
21702821 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CTGAGGGTTACGGCAGCAGGATTGA
261 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTACGGCAGCAGGATTGA
* ** *
21702885 CAGCACGCAGGGGGGACCGGGCCGGTCC-CCA-CATTGTGCATTCTACCTCTCCGGCCAGCTGAG
325 CAGCACGCAGAGGGGACCGGGCCGGTCCTCCAGC-TTACGCATTCTACCTCTCCGACCAGCTGAG
21702948 CGCCCGCACGCTCATTTCT-TAAGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAGGCATAC
389 CGCCCGCACGCTCATTT-TATAAGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAGGCATAC
21703012 GGAGTTCATTCCAGTCTAAAATCAGACCGGACCGAGGGTTGCGATAGTAGGACCAGCAGT
453 GGAGTTCATTCCAGTCTAAAATCAGACCGGACCGAGGGTTGCGATAGTAGGACCAGCAGT
* * *
21703072 AGGATCGATAGCACGCATGGGGGACCGAGCCGATCCCCGGCTTGCGCA-TCTACC-CTCTGGCCA
1 AGGATCGACAGCACGCA-GGGGGAACGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCTGACCA
* **
21703135 GATGAGCACCCGCATGCCCGATTCATGGGTTGGCTTAGGTGTAGGGAGTTCATTCCATGTCTAAG
65 GATGAACACCCGCATGCCCGATTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
* * * *
21703200 CCCCAACCGGACCGAGGGTTGTGGCAGTGGGATCGACAGCACACAGAGGGGGACCAGGCCGATCC
130 CCCCAACCGGAACAACGGTTGTGGCAGTGGGACCGACAGCACACAGAGGGGGACCAGGCCGATCC
* * ** * *
21703265 CCAGCTTGCGCATTATGCCTCTTTGGCTGGCTTAGTGCCCGAATGCTCATTTAATGGGTTGACTT
195 CCAGCTTGCGCATTATGCCTCTTCGGCTGGCTCAACGCCCGAACGCTCATTTAATGCGTTGACTT
* * *
21703330 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGTAGGATTGA
260 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATTGA
* * * * * ** *
21703395 CAGCATGCAGAGGGGATCGGGCCGGTCCTCGAGCTTACGCATTCTGCCTCTTCGACTGGTTGAGC
325 CAGCACGCAGAGGGGACCGGGCCGGTCCTCCAGCTTACGCATTCTACCTCTCCGACCAGCTGAGC
* ** * *
21703460 GCCCGTACGCTCATTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
390 GCCCGCACGCTCATTTTATAAGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
21703516 AGCCCCAGTC
Statistics
Matches: 382, Mismatches: 57, Indels: 10
0.85 0.13 0.02
Matches are distributed among these distances:
510 258 0.68
511 96 0.25
512 28 0.07
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (512 bp):
AGGATCGACAGCACGCAGGGGGAACGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCTGACCAG
ATGAACACCCGCATGCCCGATTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
CCCAACCGGAACAACGGTTGTGGCAGTGGGACCGACAGCACACAGAGGGGGACCAGGCCGATCCC
CAGCTTGCGCATTATGCCTCTTCGGCTGGCTCAACGCCCGAACGCTCATTTAATGCGTTGACTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATTGAC
AGCACGCAGAGGGGACCGGGCCGGTCCTCCAGCTTACGCATTCTACCTCTCCGACCAGCTGAGCG
CCCGCACGCTCATTTTATAAGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAGGCATACGGA
GTTCATTCCAGTCTAAAATCAGACCGGACCGAGGGTTGCGATAGTAGGACCAGCAGT
Found at i:21703358 original size:159 final size:159
Alignment explanation
Indices: 21703159--21703596 Score: 497
Period size: 159 Copynumber: 2.8 Consensus size: 159
21703149 TGCCCGATTC
**
21703159 ATGGGTTGGCTTAGGTGTAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGG
1 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGG
* *
21703224 CAGTGGGATCGACAGCACACAGAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTTT
66 CAGTGGGATCGACAGCACACAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTC
* * *
21703289 GGCTGGCTT-AGTGCCCGAATGCTCATTTA
131 GACTGG-TTGAGCGCCCGAACGCTCATTTA
* * ** * *
21703318 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGC
1 ATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGT
* * * ** * * * * *
21703381 GGTAGTAGGATTGACAGCATGCAGA-GGGGATCGGGCCGGTCCTCGAGCTTACGCATTCTGCCTC
64 GGCAGTGGGATCGACAGCACACAGAGGGGGACCGGGCCGATCC-CCAGCTTGCGCATTATGCCTC
* *
21703445 TTCGACTGGTTGAGCGCCCGTACGCTCATTTT
128 TTCGACTGGTTGAGCGCCCGAACGCTCATTTA
**
21703477 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGG
1 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGG
* * * ** * * *
21703542 CAGCGAGACCGGTAGCACACAGAGGGGGACCGGGCTGATCCCCGGCTTGCTCATT
66 CAGTGGGATCGACAGCACACAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATT
21703597 TCGTGCGTTG
Statistics
Matches: 222, Mismatches: 50, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
158 21 0.09
159 182 0.82
160 19 0.09
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.24
Consensus pattern (159 bp):
ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGG
CAGTGGGATCGACAGCACACAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTC
GACTGGTTGAGCGCCCGAACGCTCATTTA
Found at i:21703650 original size:26 final size:26
Alignment explanation
Indices: 21703613--21703665 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21703603 GTTGGCTTAG
21703613 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
21703639 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21703665 G
1 G
21703666 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21704372 original size:26 final size:26
Alignment explanation
Indices: 21704336--21704388 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21704326 GTTGACTTAG
21704336 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21704362 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21704388 G
1 G
21704389 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21704726 original size:26 final size:26
Alignment explanation
Indices: 21704678--21704730 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21704668 GTTGGCTTAG
**
21704678 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCACACCAAGTCTAA
*
21704704 GCATACGGAGTTCACACCCAGTCTAA
1 GCATACGGAGTTCACACCAAGTCTAA
21704730 G
1 G
21704731 AGTTTGACCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCACACCAAGTCTAA
Found at i:21705436 original size:26 final size:26
Alignment explanation
Indices: 21705400--21705452 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21705390 GTTAACTTAG
21705400 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
21705426 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
21705452 G
1 G
21705453 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:21706715 original size:185 final size:193
Alignment explanation
Indices: 21706448--21706874 Score: 493
Period size: 196 Copynumber: 2.2 Consensus size: 193
21706438 TGCATGCTCA
* * * **
21706448 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCACATGGAGTTCATTCCCA
1 TTTCGTGGGTTGGCTTAGGCATAAGGAGTTCAT-TCCATGTCTAAGCACACAGAGTTCATTCCCA
* *
21706512 GTCTAAGATCTGACCAGACTGAGGGTT-G-CAGTA-G-CAAG-ATC-G-A-CAGCACGCAT-GGG
65 GTCTAAGATCTGACCAGACCGAGGGTTCGACAGTAGGACAAGCAGCAGAATCAGCA-GCATAGGG
* *
21706568 GGGACCGGGTCGATCCCC-GACTTACGCATTCTGCCTCTCCGACCGGTTGAGCACCTGCACGCCC
129 GGGACCGAGTCGATCCCCAG-CTTACGCATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCCC
21706632 G
193 G
* * *
21706633 TTTCGTGGGTTGGCTTAGACATAAGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCTAG
1 TTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACACAGAGTTCATTCCCAG
* * *
21706698 TCTAATAT-TGGACCAGACCGAGGGTTGCGACAGTAGGACCAGCAGCAGAATTAGCAGCATGCAG
66 TCTAAGATCT-GACCAGACCGAGGGTT-CGACAGTAGGACAAGCAGCAGAATCAGCAGCAT--AG
* * * * *
21706762 GGGGGACCGAGTTGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGCT
127 GGGGGACCGAGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCC
21706827 CG
192 CG
* *
21706829 TTCCGTGGGTTGGCTTAGGCATACA-GTGTTCATTCCATGTCTAAGC
1 TTTCGTGGGTTGGCTTAGGCATA-AGGAGTTCATTCCATGTCTAAGC
21706875 CCCAACTGAA
Statistics
Matches: 203, Mismatches: 23, Indels: 21
0.82 0.09 0.09
Matches are distributed among these distances:
184 4 0.02
185 75 0.37
187 1 0.00
188 5 0.02
189 1 0.00
190 3 0.01
191 2 0.01
192 1 0.00
193 5 0.02
194 4 0.02
196 100 0.49
197 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (193 bp):
TTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACACAGAGTTCATTCCCAG
TCTAAGATCTGACCAGACCGAGGGTTCGACAGTAGGACAAGCAGCAGAATCAGCAGCATAGGGGG
GACCGAGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCCCG
Found at i:21707061 original size:26 final size:26
Alignment explanation
Indices: 21707031--21707083 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21707021 GTTGACTTAG
* *
21707031 GCATATGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21707057 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21707083 G
1 G
21707084 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21707523 original size:158 final size:156
Alignment explanation
Indices: 21707057--21707558 Score: 510
Period size: 158 Copynumber: 3.2 Consensus size: 156
21707047 CCCAGTTTAA
* * * *
21707057 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGTAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
21707121 AGCATGCAGGGGGGATCGGGTCGATCCACGGCTTGCACATTTTGCCTCTTCAACCGGCTGAGCGC
65 AGCATGCA-GGGGGATCGGGTCGATCC-CGGCTTGCACATTCTGCCTCTCCAATCGGTTGAGTGC
* * * *
21707186 CCGCACGCCCATTTTGTAGGTTGGCTTAG
128 CTGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * * * *
21707215 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACC-ACAGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGA-GGGTTGCGGCAGCAGGATCGA
* * * * * * * *
21707278 CAGCACGGAGAGAGGGACCAGGTTGATCCCCAGCTTGCACATTAC-GCCTCTCCGATCGGTTCAG
64 CAGCATGCAG-G-GGGATCGGGTCGAT-CCCGGCTTGCACATT-CTGCCTCTCCAATCGGTTGAG
* * *
21707342 TGCTTGAACGCTCATTTCGTGGGTTGACTTAG
125 TGCCTGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * *
21707374 GCATACAGAGTTCTTTCCCA-GTCTAAGATCAGATTGGACCGAGGGTTGCAGCAACAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* *
21707438 AGCATGCATGGGGGATTGGGTCGGTCCCTGGCTTGCACATTCTGCCTCTCCAATCGGTTGAGTGC
65 AGCATGCA-GGGGGATCGGGTCGATCCC-GGCTTGCACATTCTGCCTCTCCAATCGGTTGAGTGC
*
21707503 CTGCACGCTCATTTCATGGGTTGGCTTAG
128 CTGCACGCTCATTTCGTGGGTTGGCTTAG
21707532 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
21707559 CATACGGAGT
Statistics
Matches: 271, Mismatches: 59, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
157 12 0.04
158 139 0.51
159 113 0.42
160 7 0.03
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.25
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCATGCAGGGGGATCGGGTCGATCCCGGCTTGCACATTCTGCCTCTCCAATCGGTTGAGTGCCTG
CACGCTCATTTCGTGGGTTGGCTTAG
Found at i:21707562 original size:26 final size:26
Alignment explanation
Indices: 21707532--21707584 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21707522 GTTGGCTTAG
21707532 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21707558 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21707584 G
1 G
21707585 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21708120 original size:26 final size:26
Alignment explanation
Indices: 21708084--21708136 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21708074 GTTGGCTTAG
*
21708084 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
21708110 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21708136 G
1 G
21708137 AGTTTGAGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21709460 original size:26 final size:26
Alignment explanation
Indices: 21709423--21709475 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21709413 GTTGACTTAG
21709423 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
21709449 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
21709475 G
1 G
21709476 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:21709953 original size:26 final size:25
Alignment explanation
Indices: 21709924--21709974 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
21709914 TTGGCTTAAA
21709924 CATACGGAGTTCATTACATGTCTAAG
1 CATACGGAGTTCATTACA-GTCTAAG
*
21709950 CATACGGAGTTCATTCCAGTCTAAG
1 CATACGGAGTTCATTACAGTCTAAG
21709975 ATTGGATTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (25 bp):
CATACGGAGTTCATTACAGTCTAAG
Found at i:21712471 original size:26 final size:26
Alignment explanation
Indices: 21712441--21712493 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21712431 GTTGGCTTAG
*
21712441 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
21712467 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21712493 G
1 G
21712494 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21712673 original size:26 final size:26
Alignment explanation
Indices: 21712639--21712689 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
21712629 TGGCTTAGGC
21712639 ATACCGAGTTCATCCCCAGTCTAAGT
1 ATACCGAGTTCATCCCCAGTCTAAGT
* * *
21712665 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACCGAGTTCATCCCCAGTCTAAG
21712690 ATCGGAATGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACCGAGTTCATCCCCAGTCTAAGT
Found at i:21713672 original size:159 final size:158
Alignment explanation
Indices: 21713406--21713714 Score: 422
Period size: 159 Copynumber: 1.9 Consensus size: 158
21713396 GATCAGACTG
* *
21713406 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCAAGCAGGGGGGACTGGGCCGATCCTTGGCTTGCG
1 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCAAGCAGGGGGGACCGGGCCGATCCCTGGCTTGCG
* * ** * *
21713471 TATTTTGCCCCTCCGGTTGACTGAGCCCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
66 CATTCTGCCCCTCCGACTGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGG
*
21713536 AGTTCTTTCCATGTCTAAGCCCCAGCCA
131 AGTTCATTCCATGTCTAAGCCCCAGCCA
* * * *
21713564 GACCGAGGGTTGTGGCAGCGGGA-CTGGTAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTG
1 GACCGAGGGTTGCGGCAGCAGGATC-GGCAGCAAGCAG-GGGGGACCGGGCCGATCCCTGGCTTG
* * * * **
21713628 CGCATTCTGCCTCTCCGACTGGCTGAGCACCCGTATGCTTGTTTCGTGGGTTGGCTTAGGCATAC
64 CGCATTCTGCCCCTCCGACTGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAC
21713693 GGAGTTCATTCCATGTCTAAGC
129 GGAGTTCATTCCATGTCTAAGC
21713715 ATACGGAGTT
Statistics
Matches: 130, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
157 1 0.01
158 31 0.24
159 98 0.75
ACGTcount: A:0.15, C:0.28, G:0.34, T:0.23
Consensus pattern (158 bp):
GACCGAGGGTTGCGGCAGCAGGATCGGCAGCAAGCAGGGGGGACCGGGCCGATCCCTGGCTTGCG
CATTCTGCCCCTCCGACTGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCCCCAGCCA
Found at i:21713723 original size:26 final size:26
Alignment explanation
Indices: 21713687--21713739 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21713677 GTTGGCTTAG
21713687 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21713713 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21713739 G
1 G
21713740 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21714449 original size:26 final size:26
Alignment explanation
Indices: 21714412--21714464 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21714402 GTTAACTTAG
*
21714412 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*
21714438 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
21714464 G
1 G
21714465 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:21714827 original size:26 final size:26
Alignment explanation
Indices: 21714779--21714831 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21714769 GTTGACTTAG
* *
21714779 GCATATGGAGTTCATCCTCAGTCTAA
1 GCATACGGAGTTCATCCTAAGTCTAA
21714805 GCATACGGAGTTCATTCC-AAGTCTAA
1 GCATACGGAGTTCA-TCCTAAGTCTAA
21714831 G
1 G
21714832 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTAAGTCTAA
Found at i:21715172 original size:26 final size:26
Alignment explanation
Indices: 21715122--21715174 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21715112 GTTGGCTTAG
*
21715122 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
21715148 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
21715174 G
1 G
21715175 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:21715880 original size:26 final size:26
Alignment explanation
Indices: 21715843--21715895 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21715833 GTTGACTTAG
21715843 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
21715869 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
21715895 G
1 G
21715896 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:21716176 original size:158 final size:159
Alignment explanation
Indices: 21715921--21716370 Score: 410
Period size: 158 Copynumber: 2.8 Consensus size: 159
21715911 GGGTTGCGAT
* * * * * * * ** **
21715921 AGCAGGATCGACAGCATGTAGGGGG-ACCGGGCCGATCCCTGGCTTATGCATTCTGCCTCTCCGA
1 AGCAGGATAGATAGCACGAAGGGGGAATCGGGCCGATCCCCGACTTGCGCATTAGGCCTCTCCGA
* * * * * * * *
21715985 TCGACTGAGCGCCCGCACACCCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
66 CCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
* * *
21716050 AAGCCCCAG-CCGAACCGA-CGGTTGTGGC
131 AAGCACCAGACCGAACCAAGC-GTTGCGGC
* * * * * *
21716078 AGC-GAGATCGATAGCATGAAGAGGGGGA-CGGGCCGATCCCCGCCTTGCGCATTATGCCTCTTC
1 AGCAG-GATAGATAGCACGAAG-GGGGAATCGGGCCGATCCCCGACTTGCGCATTAGGCCTCTCC
* * * * * *
21716141 GGCTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAATTCCTTCCCA-G
64 GACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATT-CCATG
* * * * * *
21716205 TCTAAG-ATCGGATCGGATCAAGCGTTGCGGT
128 TCTAAGCACCAGACCGAACCAAGCGTTGCGGC
* * *
21716236 AGCAGGATAGATAGCACGCAGGGGGAATCGGGCTGATCCCCGACTTGCGCATTCGGCCTCTCCGA
1 AGCAGGATAGATAGCACGAAGGGGGAATCGGGCCGATCCCCGACTTGCGCATTAGGCCTCTCCGA
* *
21716301 CCGGCTGAGCGCCCTCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
66 CCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
21716366 AAGCA
131 AAGCA
21716371 TATGGAGCTC
Statistics
Matches: 235, Mismatches: 48, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 27 0.11
158 200 0.85
159 7 0.03
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
AGCAGGATAGATAGCACGAAGGGGGAATCGGGCCGATCCCCGACTTGCGCATTAGGCCTCTCCGA
CCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
AAGCACCAGACCGAACCAAGCGTTGCGGC
Found at i:21716757 original size:26 final size:26
Alignment explanation
Indices: 21716721--21716773 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21716711 GATGACTTAG
21716721 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
21716747 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21716773 G
1 G
21716774 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21717175 original size:158 final size:158
Alignment explanation
Indices: 21716800--21717228 Score: 474
Period size: 158 Copynumber: 2.7 Consensus size: 158
21716790 GGTTGTGGCA
* * * *
21716800 GCAGGGGTGATCGGGCCGATCCGCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCA
1 GCAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCA
* * * * * *
21716865 CGCCCATTCCGTTGGTTGGC-T-T-CATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGATCG
66 CGCTCGTTTCGTGGGTTGGCTTATGCATATGGAGTTCATTCCATGTCTAAGCACCAACCAGATCG
* * ** * *
21716927 AGGGTTGTGGTAGTGGGATTGATGGCAC
131 AGGGTTGCGGCAGCAGGATCGATAGCAC
* * * ** * * * *
21716955 GCAGAGGGGGACCGAGCTGATCCTCGGCTTGTACATTATGCCTCTTCGGCCGGCTCAGCGCCCGC
1 GCAG-GGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGC
* * *
21717020 ACGCTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGA
65 ACGCTCGTTTCGTGGGTTGGCTTATGCATATGGAGTTCATT-CCATGTCTAAGCACCA-ACCAGA
*
21717083 -CTGAGGGTTGCGGCAGCAGGATCGATAGCTC
128 TC-GAGGGTTGCGGCAGCAGGATCGATAGCAC
* * *
21717114 GCAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACTGGCTGAACGCCCGCA
1 GCAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCA
* *
21717179 CGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
66 CGCTCGTTTCGTGGGTTGGCTTATGCATATGGAGTTCATTCCATGTCTAA
21717229 ACATACGGTG
Statistics
Matches: 223, Mismatches: 43, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
155 4 0.02
156 64 0.29
157 4 0.02
158 96 0.43
159 52 0.23
160 3 0.01
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.24
Consensus pattern (158 bp):
GCAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGGCTTATGCATATGGAGTTCATTCCATGTCTAAGCACCAACCAGATCG
AGGGTTGCGGCAGCAGGATCGATAGCAC
Found at i:21723861 original size:26 final size:26
Alignment explanation
Indices: 21723825--21723876 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21723815 TTGACTTAGC
* *
21723825 CATATGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAATCTAAG
*
21723851 CATACGGAGTTCATTCCCAATCTAAG
1 CATACGGAGTTCATCCCCAATCTAAG
21723877 ATTGGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTAAG
Found at i:21724355 original size:26 final size:26
Alignment explanation
Indices: 21724319--21724371 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21724309 GTTGGCTTAG
21724319 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21724345 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21724371 G
1 G
21724372 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21724724 original size:26 final size:26
Alignment explanation
Indices: 21724688--21724740 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21724678 GTTGACTTAG
21724688 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
21724714 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
21724740 G
1 G
21724741 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:21725026 original size:110 final size:110
Alignment explanation
Indices: 21724835--21725042 Score: 346
Period size: 110 Copynumber: 1.9 Consensus size: 110
21724825 CTCCGGTTGG
* *
21724835 CTGAGCGCCTGCACTCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
*
21724900 CCAAGCCGGACGGAGGGTTGTGGCGGCGGGACCCTCTCAGATCGA
66 CCAAGCCGGACGGAGGGTTGTGGCAGCGGGACCCTCTCAGATCGA
21724945 CTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
* **
21725010 CCCAGTTGGATC-GAGGGTTGTGGCAGCGGGACC
66 CCAAGCCGGA-CGGAGGGTTGTGGCAGCGGGACC
21725043 GGCAGCACGC
Statistics
Matches: 91, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
110 90 0.99
111 1 0.01
ACGTcount: A:0.16, C:0.27, G:0.34, T:0.23
Consensus pattern (110 bp):
CTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
CCAAGCCGGACGGAGGGTTGTGGCAGCGGGACCCTCTCAGATCGA
Found at i:21726743 original size:158 final size:159
Alignment explanation
Indices: 21726402--21726745 Score: 410
Period size: 158 Copynumber: 2.2 Consensus size: 159
21726392 CCCAATCTAA
*
21726402 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGATCAGATTAAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGATCAGACTAAGGGTTGCGGTAGCAGGATCGAC
21726466 AGCACGTAAAGGGGGACCAGACTGATCCCCAGCTTACGCATTATGCCTCTCCGACCGACGGAGCA
65 AGCACGTAAAGGGGGACCAGACTGATCCCCAGCTTACGCATTATGCCTCTCCGACCGACGGAGCA
21726531 CCCGCACGCTCGTTTCGTAGGTTGACTTAG
130 CCCGCACGCTCGTTTCGTAGGTTGACTTAG
* * * *
21726561 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCAGACTAAGGGTTGCGGTAGCAGGATCGAC
* * ** * * *** * *
21726625 AGCACGTAGA-GGGGACCAG-GTCGATCCCCAGCTTGTGCATTTTGCCTCTTCGGTTGGCTGAGC
65 AGCACGTAAAGGGGGACCAGACT-GATCCCCAGCTTACGCATTATGCCTCTCCGACCGACGGAGC
* * * * *
21726688 GCTCGCATGCTTGTTTCG-AGGGTTGTCTTAG
129 ACCCGCACGCTCGTTTCGTA-GGTTGACTTAG
* *
21726719 GCATATGGAGTTTATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
21726746 CATACAGGGT
Statistics
Matches: 156, Mismatches: 24, Indels: 11
0.82 0.13 0.06
Matches are distributed among these distances:
157 5 0.03
158 85 0.54
159 64 0.41
160 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCAGACTAAGGGTTGCGGTAGCAGGATCGACA
GCACGTAAAGGGGGACCAGACTGATCCCCAGCTTACGCATTATGCCTCTCCGACCGACGGAGCAC
CCGCACGCTCGTTTCGTAGGTTGACTTAG
Found at i:21727126 original size:26 final size:26
Alignment explanation
Indices: 21727090--21727140 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21727080 TGACTTAGGT
*
21727090 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAGTCTAAGC
*
21727116 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
21727141 ATCAGACTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGC
Found at i:21727458 original size:160 final size:158
Alignment explanation
Indices: 21727213--21727775 Score: 489
Period size: 159 Copynumber: 3.5 Consensus size: 158
21727203 CCCCGACCTG
* * * *
21727213 CGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGTCCA-TTTCATGGGTAGGCTTAGGCATA
1 CGCATTATGCCTCTCCGGCCGACTGAGCGCCCACACG-CCAGTTTCATGGGTTGACTTAGGCATA
*
21727277 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGAGAACGGCAGCACG
65 CGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGAGAACGGCAGCACG
*
21727342 CAACGGGGGACCGGGTTGATCCTCGGCTTA
130 CAA-GGGGGACCAGGTTGATCCTCGGCTTA
* * * *
21727372 CGCATTATGCCTCTCCGGTCGACTGAGCACCCACATGCTAGTTTTCATGGGTTGACTTAGGCATA
1 CGCATTATGCCTCTCCGGCCGACTGAGCGCCCACACGCCAG-TTTCATGGGTTGACTTAGGCATA
** * * ** ** * * *
21727437 CGGAGTTCATTCTCA-GTCTAAG-ATCGGACCGGA-CTGAAGGTTACGATAGCAAGATCGGTAGC
65 CGGAGTTCATTC-CATGTCTAAGCCCCAG-CCGGATC-GAGGGTTGTGGCAGCGAGAACGGCAGC
* *
21727499 ACGCAGGGGGGACCAGGTCGATCC-CTGGCTTA
127 ACGCAAGGGGGACCAGGTTGATCCTC-GGCTTA
* * * * * *
21727531 CGCATTCTGCCTTTCCGACCGGCTGAGCGCCTGGACAC-CC-GTTTCATGGGTTGGCTTAGGCAT
1 CGCATTATGCCTCTCCGGCCGACTGAGCGCC--CACACGCCAGTTTCATGGGTTGACTTAGGCAT
* * * *
21727594 AGGGAGTTCATTCCATCTCTAAGCCCCAGCCAGATCGAGGATTGTGGCAGCGAG-ACTGGCAGCA
64 ACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGAGAAC-GGCAGCA
** * * *
21727658 CATAGAGGGGGACTAGGCTGATTCCT-GGCTTG
128 CGCA-AGGGGGACCAGGTTGA-TCCTCGGCTTA
* * * * * * * ** *
21727690 CGCATTATGCCTTTTCGGTCGACTTAGTGCTCGCACGCTTGTTTCATGTGTTGACTTAGGCATAC
1 CGCATTATGCCTCTCCGGCCGACTGAGCGCCCACACGCCAGTTTCATGGGTTGACTTAGGCATAC
* *
21727755 AGAGTTAATTCTCA-GTCTAAG
66 GGAGTTCATTC-CATGTCTAAG
21727776 ATCGGATCGA
Statistics
Matches: 314, Mismatches: 72, Indels: 36
0.74 0.17 0.09
Matches are distributed among these distances:
157 6 0.02
158 66 0.21
159 163 0.52
160 74 0.24
161 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
CGCATTATGCCTCTCCGGCCGACTGAGCGCCCACACGCCAGTTTCATGGGTTGACTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGAGAACGGCAGCACGC
AAGGGGGACCAGGTTGATCCTCGGCTTA
Found at i:21727604 original size:158 final size:155
Alignment explanation
Indices: 21727121--21727608 Score: 453
Period size: 159 Copynumber: 3.1 Consensus size: 155
21727111 TAAGCATACA
** * * *
21727121 GAGTTCATTCCCAGTCTAAGATCAGACTAGACCG-AGGATTGCGATAGCAGGATCGGTAGCATGC
1 GAGTTCATT-CCAGTCTAAGATCAGACCGGACTGAAGG-TTGCGATAGCAAGATCGGTAGCACGC
** * * * * * *
21727185 AAGAAGGACCGGGCCAATCCCCGACCTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACG
64 AAGGGGGACCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACAC-
* *
21727250 TCCATTTCATGGGTAGGCTTAGGCATAGG
128 -CCGTTTCATGGGTTGGCTTAGGCATAGG
** * * ** * * *
21727279 GAGTTCATTCCATGTCTAAGCCCCAG-CCGGA-TCGAGGGTTGTGGCAGCGAGAACGGCAGCACG
1 GAGTTCATTCCA-GTCTAAG-ATCAGACCGGACT-GAAGGTTGCGATAGCAAGATCGGTAGCACG
* * * * *
21727342 CAACGGGGGACCGGGTTGAT-CCTCGGCTTACGCATTATGCCTCTCCGGTCGACTGAGCACCCAC
63 CAA-GGGGGACCGGGTCGATCCCT-GGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCAC
** * *
21727406 ATGCTAGTTTTCATGGGTTGACTTAGGCATACG
126 A--CCCG-TTTCATGGGTTGGCTTAGGCATAGG
* *
21727439 GAGTTCATTCTCAGTCTAAGATCGGACCGGACTGAAGGTTACGATAGCAAGATCGGTAGCACGCA
1 GAGTTCATTC-CAGTCTAAGATCAGACCGGACTGAAGGTTGCGATAGCAAGATCGGTAGCACGCA
* * * * *
21727504 GGGGGGACCAGGTCGATCCCTGGCTTACGCATTCTGCCTTTCCGACCGGCTGAGCGCCTGGACAC
65 AGGGGGACCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCC--CACAC
21727569 CCGTTTCATGGGTTGGCTTAGGCATAGG
128 CCGTTTCATGGGTTGGCTTAGGCATAGG
21727597 GAGTTCATTCCA
1 GAGTTCATTCCA
21727609 TCTCTAAGCC
Statistics
Matches: 257, Mismatches: 58, Indels: 31
0.74 0.17 0.09
Matches are distributed among these distances:
157 5 0.02
158 75 0.29
159 99 0.39
160 71 0.28
161 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (155 bp):
GAGTTCATTCCAGTCTAAGATCAGACCGGACTGAAGGTTGCGATAGCAAGATCGGTAGCACGCAA
GGGGGACCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACCCG
TTTCATGGGTTGGCTTAGGCATAGG
Found at i:21727698 original size:318 final size:316
Alignment explanation
Indices: 21727114--21727934 Score: 891
Period size: 318 Copynumber: 2.6 Consensus size: 316
21727104 CCCAGTCTAA
* * ** *
21727114 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACCG-AGGATTGCGATAGCAGGATCGGT
1 GCATACAGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAAGG-TTACGATAGCAGGATCGGT
* * ** * * * * * *
21727178 AGCATGCAAGAAGGACCGGGCCAATCCCCGACCTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
65 AGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGC
* *
21727243 CCACACGTCCATTTCATGGGTAGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
130 CCACACG-CCATTTCATGGGTAGGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCCAGCCA
* * * *
21727308 GATCGAGGGTTGTGGCAGCGAGAACGGCAGCACGCAACGGGGGACCGGGTTGATCCTCGGCTTAC
194 GATCGAGGATTGTGGCAGCGAGAACGGCAGCACACAACGGGGGACCAGGCTGATCCTCGGCTTAC
*
21727373 GCATTATGCCTCTCCGGTCGACTGAGCACCCACATGCTAGTTTTCATGGGTTGACTTAG
259 GCATTATGCCTCTCCGGTCGACTGAGCACCCACACGCTAG-TTTCATGGGTTGACTTAG
* * *
21727432 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGACTGAAGGTTACGATAGCAAGATCGGTA
1 GCATACAGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAAGGTTACGATAGCAGGATCGGTA
* * *
21727497 GCACGCAGGGGGGACCAGGTCGATCCCTGGCTTACGCATTCTGCCTTTCCGACCGGCTGAGCGCC
66 GCACGCAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * *
21727562 TGGACAC-CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCCAGCCA
131 --CACACGCCATTTCATGGGTAGGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCCAGCCA
* *
21727626 GATCGAGGATTGTGGCAGCGAG-ACTGGCAGCACATAGA-GGGGGACTAGGCTGATTCCT-GGCT
194 GATCGAGGATTGTGGCAGCGAGAAC-GGCAGCACACA-ACGGGGGACCAGGCTGA-TCCTCGGCT
* * * * ** * * * *
21727688 TGCGCATTATGCCTTTTCGGTCGACTTAGTGCTCGCACGCTTGTTTCATGTGTTGACTTAG
256 TACGCATTATGCCTCTCCGGTCGACTGAGCACCCACACGCTAGTTTCATGGGTTGACTTAG
* * * * ** ***
21727749 GCATACAGAGTTAATTCTCAGTCTAAGATCGGATCGAACCGAGGGTTACGGCAGCAGGATCAACA
1 GCATACAGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAAGGTTACGATAGCAGGATCGGTA
** * * * * * **
21727814 GCACATAGGGGGGACCAGGCCGATCCCCAGCTTACGTATTCTGCCTCTCTGATCGACTGAATGCC
66 GCACGCAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* ** * * *
21727879 CGCACGCTCATTTTGTGGGTTA-GCTTAAGCATA-CGATGTTCATTCCATGTCTAAGC
131 CACACGC-CATTTCATGGG-TAGGCTTAGGCATAGGGA-GTTCATTCCATCTCTAAGC
21727935 ATACAGAGTT
Statistics
Matches: 417, Mismatches: 76, Indels: 21
0.81 0.15 0.04
Matches are distributed among these distances:
315 3 0.01
316 3 0.01
317 161 0.39
318 238 0.57
319 8 0.02
320 4 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (316 bp):
GCATACAGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAAGGTTACGATAGCAGGATCGGTA
GCACGCAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CACACGCCATTTCATGGGTAGGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCCAGCCAGA
TCGAGGATTGTGGCAGCGAGAACGGCAGCACACAACGGGGGACCAGGCTGATCCTCGGCTTACGC
ATTATGCCTCTCCGGTCGACTGAGCACCCACACGCTAGTTTCATGGGTTGACTTAG
Found at i:21727934 original size:317 final size:318
Alignment explanation
Indices: 21727213--21727934 Score: 808
Period size: 317 Copynumber: 2.3 Consensus size: 318
21727203 CCCCGACCTG
* * * * ** *
21727213 CGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGTCCATTTCATGGG-TAGGCTTAGGCATA
1 CGCATTCTGCCTCTCCGACCGACTGAACGCCCGCACACCCATTTCATGGGTTA-GCTTAAGCATA
* * * *
21727277 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGAGAACGGCAGCACG
65 GCGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGATTGTGGCAGCGAGAACGGCAGCACA
* *
21727342 CAACGGGGGACCGGGTTGATCCTCGGCTTACGCATTATGCCTCTCCGGTCGACTGAGCACCCACA
130 CAACGGGGGACCAGGCTGATCCTCGGCTTACGCATTATGCCTCTCCGGTCGACTGAGCACCCACA
* * * * *
21727407 TGCTAGTTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGACT
195 CGCTAGTTTTCATGGGTTGACTTAGGCATACAGAGTTAATTCTCAGTCTAAGATCGGACCGAACC
* *** * * **
21727472 GAAGGTTACGATAGCAAGATCGGTAGCACGCAGGGGGGACCAGGTCGATCCCTGGCTTA
260 GAAGGTTACGACAGCAAGATCAACAGCACACAGGGGGGACCAGGCCGATCCCCAGCTTA
* * * * * * * *
21727531 CGCATTCTGCCTTTCCGACCGGCTGAGCGCCTGGACACCCGTTTCATGGGTTGGCTTAGGCATAG
1 CGCATTCTGCCTCTCCGACCGACTGAACGCCCGCACACCCATTTCATGGGTTAGCTTAAGCATAG
* *
21727596 GGAGTTCATTCCATCTCTAAGCCCCAGCCAGATCGAGGATTGTGGCAGCGAG-ACTGGCAGCACA
66 CGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGATTGTGGCAGCGAGAAC-GGCAGCACA
* * * * * * ** * *
21727660 TAGA-GGGGGACTAGGCTGATTCCT-GGCTTGCGCATTATGCCTTTTCGGTCGACTTAGTGCTCG
130 CA-ACGGGGGACCAGGCTGA-TCCTCGGCTTACGCATTATGCCTCTCCGGTCGACTGAGCACCCA
* * *
21727723 CACGCTTG-TTTCATGTGTTGACTTAGGCATACAGAGTTAATTCTCAGTCTAAGATCGGATCGAA
193 CACGCTAGTTTTCATGGGTTGACTTAGGCATACAGAGTTAATTCTCAGTCTAAGATCGGACCGAA
* * * *
21727787 CCGAGGGTTACGGCAGCAGGATCAACAGCACATAGGGGGGACCAGGCCGATCCCCAGCTTA
258 CCGAAGGTTACGACAGCAAGATCAACAGCACACAGGGGGGACCAGGCCGATCCCCAGCTTA
* * * * * * **
21727848 CGTATTCTGCCTCTCTGATCGACTGAATGCCCGCACGCTCATTTTGTGGGTTAGCTTAAGCATA-
1 CGCATTCTGCCTCTCCGACCGACTGAACGCCCGCACACCCATTTCATGGGTTAGCTTAAGCATAG
21727912 CGATGTTCATTCCATGTCTAAGC
66 CGA-GTTCATTCCATGTCTAAGC
21727935 ATACAGAGTT
Statistics
Matches: 336, Mismatches: 63, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
316 2 0.01
317 167 0.50
318 161 0.48
319 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (318 bp):
CGCATTCTGCCTCTCCGACCGACTGAACGCCCGCACACCCATTTCATGGGTTAGCTTAAGCATAG
CGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGATTGTGGCAGCGAGAACGGCAGCACAC
AACGGGGGACCAGGCTGATCCTCGGCTTACGCATTATGCCTCTCCGGTCGACTGAGCACCCACAC
GCTAGTTTTCATGGGTTGACTTAGGCATACAGAGTTAATTCTCAGTCTAAGATCGGACCGAACCG
AAGGTTACGACAGCAAGATCAACAGCACACAGGGGGGACCAGGCCGATCCCCAGCTTA
Found at i:21728299 original size:26 final size:26
Alignment explanation
Indices: 21728263--21728315 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21728253 GTTGACTTAG
*
21728263 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
21728289 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
21728315 G
1 G
21728316 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:21728439 original size:343 final size:340
Alignment explanation
Indices: 21727995--21729319 Score: 1475
Period size: 343 Copynumber: 3.9 Consensus size: 340
21727985 AGCAGGACAG
* * * * * * *
21727995 GCAGTAGGATCGACAACACGTAGGGAAGGACCGAGCCGATCCCCGGCTTGCACATTCTGCCTCT-
1 GCAGCAGGATCGGCAGCACGTAGGG-GGGACCGAGCCGATCCCTGACTTGCGCATTCTGCCTCTC
* * ** * * * *
21728059 CTAGCTGGCTGAGCACCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCAAAGGGAGTTCATTCCAA
65 CGATC-GGCTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
* * * * * * *
21728124 GTCTAAGCCCTAGCCGGACCGAGGGTTGTGGTAGTAGGACTGGCAGCACACAACGAGGGATCGAG
129 GTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGGCAGCACGCAGCGAGGGATCGGG
*
21728189 CTAATCCCTGGCTTATGCATTATGCCTCTCCGATCAGCTGAGCGCCCACAAGCTCGTTTTGTGGG
194 CTAATCCCTGGCTTA-GCATTATGCCTCTCCGATC-GCTGAGCGCCCACAAGCTCGTTTCGTGGG
*
21728254 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATC
257 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
* *
21728319 GGACCGGACCGAAGGTTGA
322 GGATCGGACCGAGGGTTGA
* * * * *
21728338 GATAAG-AAGATCGGCAGCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGTATTCTGCCTCT
1 G--CAGCAGGATCGGCAGCACGTAGGGGGGACCGAGCCGATCCCTGACTTGCGCATTCTGCCTCT
* * * * *
21728402 CCGGTAGGCTGAGTGCCTGCACGCCCATTTTGTGGGTTGCCTTAGGCATAGGGAGTTCATTCCAT
64 CCGATCGGCTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
* *
21728467 GTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGGCAGCATGCAGTGAGGGATCGGG
129 GTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGGCAGCACGCAGCGAGGGATCGGG
* *
21728532 C-AGAT-CCTCGGCTTACGCATTATGCCTCTCCGATCGACTGAGCACCCACACGCTCGTTTCGTG
194 CTA-ATCCCT-GGCTTA-GCATTATGCCTCTCCGATCG-CTGAGCGCCCACAAGCTCGTTTCGTG
21728595 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT-TCGGAGTTCATTCCCAGTCTAAG
255 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAT-GGAGTTCATTCCCAGTCTAAG
* *
21728659 ATCGAATCGGACTGAGGGTTGTA
319 ATCGGATCGGACCGAGGGTTG-A
* * * * *
21728682 GCAGCAGGATCGACAGCACATAGGGGGGATCGAGTCGAT-CCTCGACTTGTGCATTCTGCCTCTC
1 GCAGCAGGATCGGCAGCACGTAGGGGGGACCGAGCCGATCCCT-GACTTGCGCATTCTGCCTCTC
* * *
21728746 CGATCGACTGAGTGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
65 CGATCGGCTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* * * *
21728811 TCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGCGGGGGATCGGGC
130 TCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGGCAGCACGCAGCGAGGGATCGGGC
* * * * *
21728876 TAATCCCTAGCTTGAGCATTATGCCTTTCCGACCGGCTGAGCGCCCACACA-CTCATTTCATGGG
195 TAATCCCTGGCTT-AGCATTATGCCTCTCCGATC-GCTGAGCGCCCACA-AGCTCGTTTCGTGGG
* * *
21728940 TTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCAAATGGAGTTCATTCCCAGTCTAAGATC
257 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
*
21729005 GGATCGGATCGAGGGTT-A
322 GGATCGGACCGAGGGTTGA
* * * * * *
21729023 CGGCAGCAGGATCGGCAGCACGTGGGGGGGATCGACCCGATCCCTTAACTTACGCATTCTACCTC
1 --GCAGCAGGATCGGCAGCACGTAGGGGGGACCGAGCCGATCCC-TGACTTGCGCATTCTGCCTC
* * * ** * * *
21729088 TCCGACCGTCTCAGCACCCTCACGCCAATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
63 TCCGATCGGCTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
* * * * * * *
21729153 TGTCTAAGCCCCAGTCGGACCGAGGGTTGCGGCAGCGGGATCGGCAGAACGCAGAGGGGGA-CTG
128 TGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGGCAGCACGCAGCGAGGGATC-G
* * * ** * * * * * *
21729217 GGCTGAT-CCTCAG-TTTGCACATTATGCCTCTTTGACCGGCTCAGCACCCGCACGTTCGTTTCG
192 GGCTAATCCCT-GGCTTAG--CATTATGCCTCTCCGATC-GCTGAGCGCCCACAAGCTCGTTTCG
* * *
21729280 TGGGTTAACTTATGCATACGGAGTTCATTCCCAGTCTAAG
253 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
21729320 ATCAGACCGA
Statistics
Matches: 839, Mismatches: 118, Indels: 49
0.83 0.12 0.05
Matches are distributed among these distances:
341 1 0.00
342 12 0.01
343 592 0.71
344 231 0.28
345 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (340 bp):
GCAGCAGGATCGGCAGCACGTAGGGGGGACCGAGCCGATCCCTGACTTGCGCATTCTGCCTCTCC
GATCGGCTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
CTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGGCAGCACGCAGCGAGGGATCGGGCT
AATCCCTGGCTTAGCATTATGCCTCTCCGATCGCTGAGCGCCCACAAGCTCGTTTCGTGGGTTGA
CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGAT
CGGACCGAGGGTTGA
Found at i:21728642 original size:26 final size:26
Alignment explanation
Indices: 21728606--21728658 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21728596 GTTGACTTAG
21728606 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21728632 GCATTCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21728658 G
1 G
21728659 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21728921 original size:686 final size:687
Alignment explanation
Indices: 21728074--21729319 Score: 1750
Period size: 686 Copynumber: 1.8 Consensus size: 687
21728064 TGGCTGAGCA
*
21728074 CCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCAAAGGGAGTTCATTCCAAGTCTAAGCCCTAGCC
1 CCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCAAAGGGAGTTCATTCCAAGTCTAAGCCCCAGCC
* * * * *
21728139 GGACCGAGGGTTGTGGTAGTAGGACTGGCAGCACACAACGAGGGATCGAGCTAATCCCTGGCTTA
66 GGACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAACGAGGGATCGAGCTAATCCCTAGCTTA
* * **
21728204 TGCATTATGCCTCTCCGATCAGCTGAGCGCCCACA-AGCTCGTTTTGTGGGTTGACTTAGGCATA
131 TGCATTATGCCTCTCCGACCAGCTGAGCGCCCACACA-CTCATTTCATGGGTTGACTTAGGCATA
* * *
21728268 CGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAAG
195 CAGAGTTCATCCCCAATCTAAGCAAATGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAAG
* * ** * *
21728333 GTTGA-GATAAG-AAGATCGGCAGCACGCAGGGGGGACCGAGCCGATCCC-TGGCTTGCGTATTC
260 GTT-ACG-GAAGCAAGATCGGCAGCACGCAGGGGGGACCGACCCGATCCCTTAACTTACGCATTC
* ** * ** *
21728395 TGCCTCTCCGGTAGGCTGAG-TGCCTGCACGCCCATTTTGTGGGTTGCCTTAGGCATAGGGAGTT
323 TACCTCTCCGACAGGCTCAGCACCCT-CACGCCAATTTTGTGGGTTGCCTTAGGCATAGGGAGTT
* * * * *
21728459 CATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGGCAGCATGCAGTGAG
387 CATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGCGGCAGCGGGACCGGCAGAACGCAGAGAG
* * * *
21728524 GGA-TCGGGCAGATCCTCGGCTTACGCATTATGCCTCTCCGATCGACTGAGCACCCACACGCTCG
452 GGACT-GGGCAGATCCTCAGCTTACACATTATGCCTCTCCGACCGACTCAGCACCCACACGCTCG
*
21728588 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATTCGGAGTTCATTCCCAG
516 TTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATTCGGAGTTCATTCCCAG
21728653 TCTAAGATCGAATCGGACTGAGGGTTGTAGCAGCAGGATCGACAGCACATAGGGGGGATCGAGTC
581 TCTAAGATCGAATCGGACTGAGGGTTGTAGCAGCAGGATCGACAGCACATAGGGGGGATCGAGTC
21728718 GATCCTCGACTTGTGCATTCTGCCTCTCCGATCGACTGAGTG
646 GATCCTCGACTTGTGCATTCTGCCTCTCCGATCGACTGAGTG
* * *
21728760 CCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
1 CCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCAAAGGGAGTTCATTCCAAGTCTAAGCCCCAGCC
* * * * *
21728825 GGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGCGGGGGATCGGGCTAATCCCTAGCTTG
66 GGACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAACGAGGGATCGAGCTAATCCCTAGCTT-
* *
21728890 A-GCATTATGCCTTTCCGACCGGCTGAGCGCCCACACACTCATTTCATGGGTTGACTTAGGCATA
130 ATGCATTATGCCTCTCCGACCAGCTGAGCGCCCACACACTCATTTCATGGGTTGACTTAGGCATA
* * * *
21728954 CAGAGTTCATCCCCAATCTAAGCAAATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGG
195 CAGAGTTCATCCCCAATCTAAGCAAATGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAAG
* * ** *
21729019 GTTACGGCAGCAGGATCGGCAGCACGTGGGGGGGATCGACCCGATCCCTTAACTTACGCATTCTA
260 GTTACGGAAGCAAGATCGGCAGCACGCAGGGGGGACCGACCCGATCCCTTAACTTACGCATTCTA
* * *
21729084 CCTCTCCGACCGTCTCAGCACCCTCACGCCAATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCAT
325 CCTCTCCGACAGGCTCAGCACCCTCACGCCAATTTTGTGGGTTGCCTTAGGCATAGGGAGTTCAT
* * *
21729149 TCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGCGGCAGCGGGATCGGCAGAACGCAGAGGGGGA
390 TCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGCGGCAGCGGGACCGGCAGAACGCAGAGAGGGA
* * * ** * * *
21729214 CTGGGCTGATCCTCAGTTTGCACATTATGCCTCTTTGACCGGCTCAGCACCCGCACGTTCGTTTC
455 CTGGGCAGATCCTCAGCTTACACATTATGCCTCTCCGACCGACTCAGCACCCACACGCTCGTTTC
* *
21729279 GTGGGTTAACTTATGCATACGGAGTTCATTCCCAGTCTAAG
520 GTGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
21729320 ATCAGACCGA
Statistics
Matches: 482, Mismatches: 71, Indels: 13
0.85 0.13 0.02
Matches are distributed among these distances:
685 3 0.01
686 264 0.55
687 211 0.44
688 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (687 bp):
CCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCAAAGGGAGTTCATTCCAAGTCTAAGCCCCAGCC
GGACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAACGAGGGATCGAGCTAATCCCTAGCTTA
TGCATTATGCCTCTCCGACCAGCTGAGCGCCCACACACTCATTTCATGGGTTGACTTAGGCATAC
AGAGTTCATCCCCAATCTAAGCAAATGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAAGG
TTACGGAAGCAAGATCGGCAGCACGCAGGGGGGACCGACCCGATCCCTTAACTTACGCATTCTAC
CTCTCCGACAGGCTCAGCACCCTCACGCCAATTTTGTGGGTTGCCTTAGGCATAGGGAGTTCATT
CCATGTCTAAGCCCCAGCCGGACCGAGGGTTGCGGCAGCGGGACCGGCAGAACGCAGAGAGGGAC
TGGGCAGATCCTCAGCTTACACATTATGCCTCTCCGACCGACTCAGCACCCACACGCTCGTTTCG
TGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATTCGGAGTTCATTCCCAGTCTAA
GATCGAATCGGACTGAGGGTTGTAGCAGCAGGATCGACAGCACATAGGGGGGATCGAGTCGATCC
TCGACTTGTGCATTCTGCCTCTCCGATCGACTGAGTG
Found at i:21729489 original size:26 final size:26
Alignment explanation
Indices: 21729453--21729503 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21729443 TAGCTTAGGC
21729453 ATACGGAGTTC-TTTCCACGTCTAAGT
1 ATACGGAGTTCATTTCCA-GTCTAAGT
21729479 ATACGGAGTTCATTTCCAGTCTAAG
1 ATACGGAGTTCATTTCCAGTCTAAG
21729504 AGTTTAAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (26 bp):
ATACGGAGTTCATTTCCAGTCTAAGT
Found at i:21729836 original size:26 final size:26
Alignment explanation
Indices: 21729802--21729852 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21729792 TGACATAGGC
*
21729802 ATACGGAGTTCA-TCCTCAGTCTAAGT
1 ATACAGAGTTCACTCC-CAGTCTAAGT
21729828 ATACAGAGTTCACTCCCAGTCTAAG
1 ATACAGAGTTCACTCCCAGTCTAAG
21729853 ATCAAATTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCACTCCCAGTCTAAGT
Found at i:21730310 original size:158 final size:158
Alignment explanation
Indices: 21729965--21730329 Score: 439
Period size: 158 Copynumber: 2.3 Consensus size: 158
21729955 CCCGCTCACC
* *
21729965 CGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACAGGATCGAGGG
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCACAACAGGATCGAGGG
* * * * *
21730030 TTGTGGCAGCAAGATCGACAGCACGTAGAGGGGGATCAGGCCGATCCTCGGCTTTCGCATTATGC
66 TTGTGGCAGCAAGATCGACAGCAC-TACAGGGGGATCAGGCCGATCCCCGACTTGCCCATTATGC
* * * *
21730095 CTATCTGGCCGGCTCAGTGCCCGCACGCT
130 CTATCCGACCGACTCAGCGCCCGCACGCT
* * * *
21730124 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CTTAGTCTAAGATCAGAAC-GGATCGAG
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAG-CCACAACAGGATCGAG
* * * * *
21730187 GGTTGTGGTAGCAGGATCGACAGCA-TACAGGGGAGATCGGGTCGATCCCCGACTTGCCCATTCT
64 GGTTGTGGCAGCAAGATCGACAGCACTACAGGGG-GATCAGGCCGATCCCCGACTTGCCCATTAT
* * * **
21730251 GCCTCTCCGACCGATTGAGCGCTTGCACGCT
128 GCCTATCCGACCGACTCAGCGCCCGCACGCT
*
21730282 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
21730330 ATGCAGAGTT
Statistics
Matches: 173, Mismatches: 29, Indels: 10
0.82 0.14 0.05
Matches are distributed among these distances:
157 7 0.04
158 88 0.51
159 74 0.43
160 4 0.02
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCACAACAGGATCGAGGG
TTGTGGCAGCAAGATCGACAGCACTACAGGGGGATCAGGCCGATCCCCGACTTGCCCATTATGCC
TATCCGACCGACTCAGCGCCCGCACGCT
Found at i:21731236 original size:158 final size:157
Alignment explanation
Indices: 21730877--21731376 Score: 361
Period size: 157 Copynumber: 3.2 Consensus size: 157
21730867 CCCAATCTAA
* *
21730877 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCAACAACAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAACAACAGGATCGGCA
* * * * * *
21730942 GCACGCAGGGGGACCGAGCCAATCCCCAGCTTGCGCTTTCTGCCTCTCCGGCCAACTGAGCGACC
66 GAACGCAGGGGGACCGAGCCAATCCCCAGCTTGCACATTATGCCTCTCCGACCAACTCAGCGACC
**
21731007 GCACGCCCGTTTCATGGGTTGGCTTAG
131 GCACGCCCGTTTCATGGGTTAACTTAG
* ** * ** * *
21731034 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGCGGCAGCGGGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCAACAACAGGATCGG
* * ** * * * **
21731097 CAGAACGCAGAGGGGGACTGGGCTGATCCTCAGTTTGCACATTATGCCTCTTCGACCGGCTCAGC
64 CAGAACGC--AGGGGGACCGAGCCAATCCCCAGCTTGCACATTATGCCTCTCCGACCAACTCAGC
* ** *
21731162 -ACCCGCATGTTCGTTT-ATGGGTTAACTTAT
127 GA-CCGCACGCCCGTTTCATGGGTTAACTTAG
* * ** *
21731192 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACAGAGGGTTGCAGTAGCAGGATC-G-A
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAACAACAGGATCGGCA
* * * * * * * * * **
21731255 TAACACCTAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC-AGTC-GGTCGAG
66 GAAC-GC-A-GGGGGACCGAGCCAATCCCCAGCTTGCACATTATGCCTCTCCGA-CCAACTC-AG
* * * * *
21731318 CGCCCACACGCTCGTTTCGTGGGTTAGCTTAG
126 CGACCGCACGCCCGTTTCATGGGTTAACTTAG
*
21731350 GCATACGGAGTTC-TTTCCACGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
21731377 CATACGGAGT
Statistics
Matches: 269, Mismatches: 60, Indels: 27
0.76 0.17 0.08
Matches are distributed among these distances:
156 11 0.04
157 113 0.42
158 90 0.33
159 55 0.20
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAACAACAGGATCGGCA
GAACGCAGGGGGACCGAGCCAATCCCCAGCTTGCACATTATGCCTCTCCGACCAACTCAGCGACC
GCACGCCCGTTTCATGGGTTAACTTAG
Found at i:21731386 original size:26 final size:26
Alignment explanation
Indices: 21731350--21731402 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21731340 GTTAGCTTAG
*
21731350 GCATACGGAGTTC-TTTCCACGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21731376 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21731402 G
1 G
21731403 AGTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21732882 original size:26 final size:26
Alignment explanation
Indices: 21732853--21732905 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21732843 CTTGACTTAG
21732853 GCATACAAAGTTCATCCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
* * *
21732879 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
21732905 G
1 G
21732906 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:21733187 original size:159 final size:159
Alignment explanation
Indices: 21732879--21733381 Score: 489
Period size: 159 Copynumber: 3.2 Consensus size: 159
21732869 CCCAATCTAA
* * * * * * * * *
21732879 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCAAACCAAGGTTTGCGGCAGCAAGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCGAGGGTTGTGGCAACAGGACCGA
* * ** * * * *
21732942 TAGCACGCAGAGGGGATCGAACCGATCCCTAGCTTACGCATTTTGCCTCTCCGGCCGGCTGAGCA
65 CAGCACGCAGGGGGGATCGGGCCGATCCCTAGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCG
* * * *
21733007 CCCGCACACCCATTTCATGGGTCGACTTAG
130 CCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * ***
21733037 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGTGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTGTGGCAACAGGACCGAC
** * *
21733101 AGCACGCAGAGGGGGA-CTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGC
66 AGCACGCAG-GGGGGATC-GGGCCGATCCCTAGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGC
**
21733165 GCCCGCACGCTCGTTTTGTGGGTTGACTTAG
129 GCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * *
21733196 GCATATGGAGTTCATT-CATAGTCTAAG-ATCAGACCGAACCGAGGGTTGTTGCAACAGGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCGAACCGAGGGTTGTGGCAACAGGACCGA
* * * * * * *
21733259 TAGCATGTAGGGGGGATCGGGCCGATCCCTAGCTTGTGCATTCTGCCTC-TCGACCGGTTGAGCG
65 CAGCACGCAGGGGGGATCGGGCCGATCCCTAGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCG
* *
21733323 CCCGTACGCTCGTTTCATGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCATGGGTTGACTTAG
*
21733353 GCATACGAAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
21733382 TATGGAGTTC
Statistics
Matches: 277, Mismatches: 59, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
157 61 0.22
158 94 0.34
159 122 0.44
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTGTGGCAACAGGACCGAC
AGCACGCAGGGGGGATCGGGCCGATCCCTAGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:21733383 original size:26 final size:26
Alignment explanation
Indices: 21733353--21733405 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21733343 GTTGGCTTAG
*
21733353 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
* *
21733379 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
21733405 G
1 G
21733406 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:21733641 original size:12 final size:12
Alignment explanation
Indices: 21733599--21733639 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
21733589 TGAGGGTTGT
21733599 GGCAGCAGGATC
1 GGCAGCAGGATC
21733611 GGCAGCAGGATC
1 GGCAGCAGGATC
* *
21733623 AGCAGTAGGATC
1 GGCAGCAGGATC
21733635 GGCAG
1 GGCAG
21733640 TATGCAAGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.27, C:0.22, G:0.41, T:0.10
Consensus pattern (12 bp):
GGCAGCAGGATC
Found at i:21733746 original size:183 final size:183
Alignment explanation
Indices: 21733431--21733810 Score: 724
Period size: 183 Copynumber: 2.1 Consensus size: 183
21733421 GGGTTGCGGT
*
21733431 AGCAGGACCAGCAGTAGGATCGGCAGTATGCAAGGGGGGACCAGGCCGATCCCTGCCTTGCGAAT
1 AGCAGGATCAGCAGTAGGATCGGCAGTATGCAAGGGGGGACCAGGCCGATCCCTGCCTTGCGAAT
21733496 TCTGCCTCTCCGGTCGACTGAGCGCCAGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGT
66 TCTGCCTCTCCGGTCGACTGAGCGCCAGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGT
21733561 TCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCAGGATCGGC
131 TCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCAGGATCGGC
*
21733614 AGCAGGATCAGCAGTAGGATCGGCAGTATGCAAGGGGGGACCAGGCCGATCCCTGCCTTGCGCAT
1 AGCAGGATCAGCAGTAGGATCGGCAGTATGCAAGGGGGGACCAGGCCGATCCCTGCCTTGCGAAT
* *
21733679 TCTGCCTCTCCGGTCGGCTGAGCGCCAGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGT
66 TCTGCCTCTCCGGTCGACTGAGCGCCAGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGT
21733744 TCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCAGGATCGGC
131 TCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCAGGATCGGC
21733797 AGCAGGATCAGCAG
1 AGCAGGATCAGCAG
21733811 CACGCAGAGA
Statistics
Matches: 193, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
183 193 1.00
ACGTcount: A:0.19, C:0.27, G:0.33, T:0.21
Consensus pattern (183 bp):
AGCAGGATCAGCAGTAGGATCGGCAGTATGCAAGGGGGGACCAGGCCGATCCCTGCCTTGCGAAT
TCTGCCTCTCCGGTCGACTGAGCGCCAGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGT
TCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCAGGATCGGC
Found at i:21733799 original size:12 final size:12
Alignment explanation
Indices: 21733782--21733812 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
21733772 TGAGGGTTGT
21733782 GGCAGCAGGATC
1 GGCAGCAGGATC
21733794 GGCAGCAGGATC
1 GGCAGCAGGATC
*
21733806 AGCAGCA
1 GGCAGCA
21733813 CGCAGAGAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.26, G:0.39, T:0.06
Consensus pattern (12 bp):
GGCAGCAGGATC
Found at i:21734251 original size:159 final size:158
Alignment explanation
Indices: 21733967--21734433 Score: 462
Period size: 158 Copynumber: 2.9 Consensus size: 158
21733957 ATCAGATTGG
* * *
21733967 ACCGAGGGTTGCGACAGCAGGACCGACAGCAC-ACAGGGGGGACCGGGCCGATCCCCGGCTTGTG
1 ACCGAGGGTTGTGGCAGCAGGACCGACAGCACGA-AGGGGGGATCGGGCCGAT-CCCGGCTTGTG
* * * * * * *
21734031 CATTTTGTCTC-TCTGACCGGTTGAGCGCCTGCATGCCCGTTTCATGGGTTGGCTTAGGCATA-G
64 CATTATGCCTCTTC-GATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
*
21734094 GAAGTTCATTCCATGTCTAAGCCCCAG-CCAA
128 G-AGTTCATTCCATGTCTAAGCACCAGACCAA
* *
21734125 ACTGAGGGTTGTGGCAGCAGGACC-AGCAGCACGAAGAGGGGGATCGGGCCGATGCCCGACTTGT
1 ACCGAGGGTTGTGGCAGCAGGACCGA-CAGCACGAAG-GGGGGATCGGGCCGAT-CCCGGCTTGT
* * * * * *
21734189 GCATTATGCCTCTTCGGTCGGCTCAGCTCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACG
63 GCATTATGCCTCTTCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
* *
21734254 GAGTTCATTCC-TAGTCTAAG-ATCAGACCAG
128 GAGTTCATTCCAT-GTCTAAGCACCAGACCAA
* * * * * * *
21734284 ACCGAGGGTTGTTGCAGCAAGATCGATAGAACGTAGGGGGGATCGGGCCGATCCTCGGCTTGCGC
1 ACCGAGGGTTGTGGCAGCAGGACCGACAGCACGAAGGGGGGATCGGGCCGATCC-CGGCTTGTGC
* * * * * * * ** *
21734349 ATTCTACCTTTTCGATCAGCTGAGCGCCCGTACGCTCATTTCACGGGTTGGCAGAGGCATATGGA
65 ATTATGCCTCTTCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
21734414 GTTCATTCCATGTCTAAGCA
130 GTTCATTCCATGTCTAAGCA
21734434 TGCAGAGTTC
Statistics
Matches: 251, Mismatches: 47, Indels: 21
0.79 0.15 0.07
Matches are distributed among these distances:
157 3 0.01
158 122 0.49
159 121 0.48
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
ACCGAGGGTTGTGGCAGCAGGACCGACAGCACGAAGGGGGGATCGGGCCGATCCCGGCTTGTGCA
TTATGCCTCTTCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCACCAGACCAA
Found at i:21735215 original size:26 final size:26
Alignment explanation
Indices: 21735179--21735231 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21735169 GTTGGCTTAG
*
21735179 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCAT-TCTAA
21735205 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCATTCTAA
21735231 G
1 G
21735232 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCATTCTAA
Found at i:21735779 original size:786 final size:774
Alignment explanation
Indices: 21734274--21735824 Score: 2091
Period size: 786 Copynumber: 2.0 Consensus size: 774
21734264 CTAGTCTAAG
* * * * *
21734274 ATCAGACCAGACCGAGGGTTGTTGCAGCAAGATCGATAGAACGTAGGGGGGATCGGGCCGATCCT
1 ATCAGACCAGACCGAGGGTTGTCGCAGCAAGATCGATAGAACGCAGGGGGGACCGAGCCGATCCC
* * * * * *
21734339 CGGCTTGCGCATTCTACCTTTTCGATCAGCTGAGCGCCCGTACGCTCATTTCACGGGTTGGCAGA
66 CGACTTGCGCATTATACCTTCTAGACCAGCTGAGCGCCCGCACGCTCATTTCACGGGTTGGCAGA
* *
21734404 GGCATATGGAGTTCATTCCATGTCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATTTTGAGCCA
131 GGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTTTGAGCCA
* * *** *
21734469 CGGTGCACATGTTGGGCTCGAGCATGTGCTGGTGCCGCATGTTTTTCGCCCAGGGCACCATCGTT
196 CGGTGAACATGCTGAAATCGAGCATGTGCTGGTGCCGCATGTTTTTCACCCAGGGCACCATCGTT
*
21734534 GGAGAGCCTAACCGGCAACATTAGGTGTTCCGACGATTGGGGGGCCAGGGGGGTGTGCGCACATG
261 GGAGAGCCTAACCGGCAACATTAGGGGTTCCGACGATTGGGGGGCCAGGGGGGTGTGCGCACATG
* * * *
21734599 ATGTCCGATGGGTGCTGGTACTTGGCCTTATATTGTCTCTCTATCCCTCATCAAACCTCAAGAAC
326 ATGTCCGATGGGTGATGGTACTTGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
*
21734664 TCACACCCCCTTAAAGAGCATTTGAGATTTATAGGTTTGCTGCAGTAGCCATTAAAGTGTCTGAA
391 TCACACCCCCTTAAAGAGCATTTGAGATTTATAGGTTTGCTCCAGTAGCCATTAAAGTGTCTGAA
* * *
21734729 ATGGGGACACTTTTTTCAAATGATCACAAAATATTTCTACACTTCGTGTTTTTTAAGCTGAATAT
456 ATGGGGACACTTTTTTCAAACGATCACAAAATACTTCTACACTTCGAGTTTTTTAAGCTGAATAT
* * *
21734794 TTTTTTTCATGCCAACAAAAATAAAAGGATCACCTCTACCAAATTTGGGGGCAGAACTCTTCCTA
521 TTTTTTGCATGCCAACAAAAATAAAAGGATCACCTCTACCAAATTTGGGGGCAAAACTCTTCCGA
*
21734859 AAAAATTTTTAAAAAATCCCAAACCGCAAAAAATTTCGAAAATCGTGAAAAATAGAAAACAGGTC
586 AAAAAATTTTAAAAAATCCCAAACCGCAAAAAATTTCGAAAATCGTGAAAAATAGAAAACAGGTC
* *
21734924 ATCTCGCCATGACACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAA
651 ATCTCGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
21734989 TGGCATTGGCATGGCAGAAATATGAAGATGTGCTTAAACCCTCCTACCACCCGTCAAAT
716 TGGCATTGGCATGGCAAAAATATGAAGATGTGCTTAAACCCACCTACCACCCGTCAAAT
** * *
21735048 ATCAGACTGGACCGAGGGTTG-CGACAGCAGGATCGATAGCACGCAGGGGGGACCGAGCCGATCC
1 ATCAGACCAGACCGAGGGTTGTCG-CAGCAAGATCGATAGAACGCAGGGGGGACCGAGCCGATCC
* * * ** ** *
21735112 CCGACTTGCGCATTATGCCTCTCTAG-CCGGCTGAGCGCCTGCACGCTTGTTTCGTGGGTTGGCT
65 CCGACTTGCGCATTATACCT-TCTAGACCAGCTGAGCGCCCGCACGCTCATTTCACGGGTTGGCA
* *
21735176 TAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCATTCTAAGATTTTGAGC
129 GAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTTTGAGC
* * *
21735241 CACGGTGAACATGCTGAAATCGGGCATGTGCTGGTGTCGCATTTTTTTCACCCAGGGCACCATCG
194 CACGGTGAACATGCTGAAATCGAGCATGTGCTGGTGCCGCATGTTTTTCACCCAGGGCACCA---
* ** * * ***
21735306 TCGGAGCATCGTCGGATAGCCTAACCGGCGGCATTGGGGGTTTCGGTTATTGGGGGGGCC-GGGG
256 TC---G--T--T-GGAGAGCCTAACCGGCAACATTAGGGGTTCCGACGATT-GGGGGGCCAGGGG
**
21735370 GGATGTGCGCACATGATGTGTGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
312 GG-TGTGCGCACATGATGTCCGATGGGTGATGGTACTTGG-CCTTATATTGGCCCCCTATCCCTC
* *
21735435 ATCAGACCTCGAA-AACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGT
375 ATCAAACCTC-AAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTATAGGTTTGCT-CCAGT
*
21735499 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGATCACAAAAT-CTTCTCCACTTCG
437 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGATCACAAAATACTTCTACACTTCG
* * * *
21735563 AG-TTTTT-AGCT-AA-AGTTTTTTGTGCATGCCATCAAAAATACAAGGGTCACCTTTACCAAAT
502 AGTTTTTTAAGCTGAATA-TTTTTT-TGCATGCCAACAAAAATAAAAGGATCACCTCTACCAAAT
* * *
21735624 TTGGGGAG-AAAACTCTTTCGAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTC-AAAAT
565 TTGGGG-GCAAAACTCTTCCGAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAATTTCGAAAA-
* * * *
21735687 TTGTGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTG
628 TCGTGAAAAATAGAAAACAGGTCATCTCGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTG
* *
21735752 TATGAATTTATACA-CCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCTTGAACCC
693 TATGAATTTACA-AGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCTTAAACCC
21735816 ACCTACCAC
757 ACCTACCAC
21735825 TCGTTCGATC
Statistics
Matches: 674, Mismatches: 79, Indels: 36
0.85 0.10 0.05
Matches are distributed among these distances:
773 1 0.00
774 213 0.32
775 3 0.00
777 2 0.00
780 1 0.00
782 1 0.00
784 2 0.00
785 47 0.07
786 256 0.38
787 66 0.10
788 28 0.04
789 54 0.08
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (774 bp):
ATCAGACCAGACCGAGGGTTGTCGCAGCAAGATCGATAGAACGCAGGGGGGACCGAGCCGATCCC
CGACTTGCGCATTATACCTTCTAGACCAGCTGAGCGCCCGCACGCTCATTTCACGGGTTGGCAGA
GGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTTTGAGCCA
CGGTGAACATGCTGAAATCGAGCATGTGCTGGTGCCGCATGTTTTTCACCCAGGGCACCATCGTT
GGAGAGCCTAACCGGCAACATTAGGGGTTCCGACGATTGGGGGGCCAGGGGGGTGTGCGCACATG
ATGTCCGATGGGTGATGGTACTTGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTATAGGTTTGCTCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAACGATCACAAAATACTTCTACACTTCGAGTTTTTTAAGCTGAATAT
TTTTTTGCATGCCAACAAAAATAAAAGGATCACCTCTACCAAATTTGGGGGCAAAACTCTTCCGA
AAAAAATTTTAAAAAATCCCAAACCGCAAAAAATTTCGAAAATCGTGAAAAATAGAAAACAGGTC
ATCTCGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCATGGCAAAAATATGAAGATGTGCTTAAACCCACCTACCACCCGTCAAAT
Found at i:21741618 original size:26 final size:26
Alignment explanation
Indices: 21741588--21741640 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21741578 GTTGACTTAG
*
21741588 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21741614 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21741640 G
1 G
21741641 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21748053 original size:158 final size:158
Alignment explanation
Indices: 21747575--21748076 Score: 541
Period size: 158 Copynumber: 3.2 Consensus size: 158
21747565 CCCAGTCTAA
* * *
21747575 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCAGACTGAGGGTTGTGGCAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-AGACCGAGGGTTGTGGTAGCAGGATCGAC
* * * * * * *
21747639 AGCACGCAAGGGTGACCAAGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGGCTAGCTGAACGC
65 AGCACGCAGGGGGGACCGAGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGGCCGAACGC
* *
21747704 TCGCACGCCCGTTTCGTGGGTTGGCTTAG
130 TCGCACGCTCATTTCGTGGGTTGGCTTAG
* * ** * * *
21747733 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCAGATCGAGGGTTGTGGCT-GCGGGATCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CTAGACCGAGGGTTGTGG-TAGCAGGATCG
* * * * * *
21747795 ACAGCACGCAGAGGGGGACCGAGCCAATCCCCGGCTTGTGCATTATGCCTTTTCGATCGGCTC-A
63 ACAGCACGCAG-GGGGGACCGAGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGGC-CGA
* *
21747859 ATC-CCCGCACGCTCATTTCGTGGGTTGACTTAG
126 A-CGCTCGCACGCTCATTTCGTGGGTTGGCTTAG
* **
21747892 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGTGGTAGCAGGATCGACA
* * * *
21747957 GCACGTAGGGGGGACCG-GACCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTTGGCCGAGCGC
66 GCACGCAGGGGGGACCGAG-CCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGGCCGAACGC
* *
21748021 TTGCACGCTCATTTCGTGGGTTGGCTTCG
130 TCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
21748050 GCATACGGAGTTCATCCCCAGTGTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
21748077 CATACGGAGT
Statistics
Matches: 278, Mismatches: 53, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
157 8 0.03
158 145 0.52
159 119 0.43
160 6 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGTGGTAGCAGGATCGACA
GCACGCAGGGGGGACCGAGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGGCCGAACGCT
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:21748086 original size:26 final size:26
Alignment explanation
Indices: 21748050--21748102 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21748040 GTTGGCTTCG
21748050 GCATACGGAGTTCATCCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTGTAA
* *
21748076 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTGTAA
21748102 G
1 G
21748103 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTGTAA
Found at i:21748227 original size:184 final size:184
Alignment explanation
Indices: 21747892--21748248 Score: 525
Period size: 184 Copynumber: 1.9 Consensus size: 184
21747882 GTTGACTTAG
** *
21747892 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
** *
21747957 GCACGTAGGGGGGACCGGACCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTTGGCCGAGCGCT
66 GCACGTAGGGGGGACCGGACCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCCGAGCGCC
* * * * *
21748022 TGCACGCTCATTTCGTGGGTTGGCTTCGGCATACGGAGTTCATCCCCAGTGTAA
131 CGCACACCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTGTAA
*
21748076 GCATACGGAGTTCATTCCCAGTTTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * * *
21748141 GCACGTAGGGGGGACGGGGCTGTTCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
66 GCACGTAGGGGGGACCGGACCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCCGAGCGCC
* * *
21748206 CGTACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
131 CGCACACCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
21748249 TCCATGCCTA
Statistics
Matches: 152, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
184 152 1.00
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
GCACGTAGGGGGGACCGGACCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCCGAGCGCC
CGCACACCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTGTAA
Found at i:21748468 original size:501 final size:501
Alignment explanation
Indices: 21747514--21748629 Score: 1457
Period size: 501 Copynumber: 2.2 Consensus size: 501
21747504 CTGGTCGACT
* * * * *
21747514 GAGCGTCTGCACGCTCGTTTCGTGGGTTGACTTAGGCCTATGGAGTTCATCCCCAGTCTAAGCAT
1 GAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTGTAAGCAT
* * * * *
21747579 ACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCAC
66 ACGGAGTTCATTCCCAGTATAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
* * * *
21747644 GCAAGGGTGACCAAGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGGCTAGCTGAACGCTCGCA
131 GCAAGGGGGACCAAGCCAATCCCCGACTTGCGCATTCTACCTCTCCGGCCAGCTGAACGCCCGCA
* * *
21747709 CGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCG
196 CACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCAGATCG
* * * **
21747774 AGGGTTGTGGCTGCGGGATCGACAGCACGCAGAGGGGGACCGAGCCAATCCCCGGCTTGTGCATT
261 AGGGTTGTGGCAGCGGGATCGACAGCACACAGAGGAGGACCGAGCCAATCCCCGGCTTGCACATT
* * * * * * *
21747839 ATGCCTTTTCGATCGGCTCAATCCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
326 ATCCCTCTCCGACCGGCTCAAGCCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTT
* * *
21747904 CATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGTAGGGGG
391 CATTCCCAGTCAAAGATCGAACCGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGTAGGGGG
* * * * *
21747969 GA-CCGGACCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTTGGCC
456 GATCAGG-CCGATCCCCGACTTGCACATTCTACCTCTCCAGCTGGCC
* * *
21748015 GAGCGCTTGCACGCTCATTTCGTGGGTTGGCTTCGGCATACGGAGTTCATCCCCAGTGTAAGCAT
1 GAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTGTAAGCAT
* *
21748080 ACGGAGTTCATTCCCAGTTTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCAC
66 ACGGAGTTCATTCCCAGTATAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
* * *** *** * * * * *
21748145 GTAGGGGGGACGGGGCTGTTCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTA
131 GCAAGGGGGACCAAGCCAATCCCCGACTTGCGCATTCTACCTCTCCGGCCAGCTGAACGCCCGCA
21748210 CACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCAGA-CT
196 CACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCAGATC-
* * * *
21748274 GAGGGTTGTGGCAGCGGGATCGGCAGCACACAGAGGAGGATCGAGTCGATCCCCGGCTTGCACAT
260 GAGGGTTGTGGCAGCGGGATCGACAGCACACAGAGGAGGACCGAGCCAATCCCCGGCTTGCACAT
* * * *
21748339 TATCCCTCTCCGGCCTGCTC-AGCGCCCACATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAG
325 TATCCCTCTCCGACCGGCTCAAGC-CCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAG
* * *
21748403 TTCATTCCCAGTCAAAGATTGAACCGGACCGAGGGTTACGGTAGTAGGATCGACAGCATGTAGGG
389 TTCATTCCCAGTCAAAGATCGAACCGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGTAGGG
* * *
21748468 GGGATCAGGTCGATCCCCGGCTTGCACATTCTACCTCTCCAGCTGGCT
454 GGGATCAGGCCGATCCCCGACTTGCACATTCTACCTCTCCAGCTGGCC
* * * ** *
21748516 GAGCGCCCGCACGCTTGTTTTGTGGGTTGGCTTAGGCATACAAAGTTCAT-TCCATGTGTAAGCA
1 GAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCA-GTGTAAGCA
* * **
21748580 TACGGACTTCATTCCCAGTATAAGATCGAACTGGACCGAGGGTTGCGGCA
65 TACGGAGTTCATTCCCAGTATAAGATCGGACCAGACCGAGGGTTGCGGCA
21748630 AAAGGACCAG
Statistics
Matches: 528, Mismatches: 83, Indels: 8
0.85 0.13 0.01
Matches are distributed among these distances:
500 6 0.01
501 519 0.98
502 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (501 bp):
GAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTGTAAGCAT
ACGGAGTTCATTCCCAGTATAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
GCAAGGGGGACCAAGCCAATCCCCGACTTGCGCATTCTACCTCTCCGGCCAGCTGAACGCCCGCA
CACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCAGATCG
AGGGTTGTGGCAGCGGGATCGACAGCACACAGAGGAGGACCGAGCCAATCCCCGGCTTGCACATT
ATCCCTCTCCGACCGGCTCAAGCCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTT
CATTCCCAGTCAAAGATCGAACCGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGTAGGGGG
GATCAGGCCGATCCCCGACTTGCACATTCTACCTCTCCAGCTGGCC
Found at i:21748541 original size:158 final size:157
Alignment explanation
Indices: 21748076--21748568 Score: 497
Period size: 158 Copynumber: 3.1 Consensus size: 157
21748066 CCCAGTGTAA
* * *
21748076 GCATACGGAGTTCATTCCCAGTTTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * * * *
21748141 GCACGTAGGGGGGA-CGGGGCTGTTCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
66 GCACGTAGGGGGGATC-GGTC-GATCCCCGGCTTGCACATTCTACCTCTCCGGCTGGCTGAGCGC
* * * *
21748205 CCGTACACCCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * * ** * *
21748234 GCATAGGGAGTTCATT-CCATGCCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCGGGATCGGC
1 GCATACGAAGTTCATTCCCA-GTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGATCGAC
** * * * *
21748298 AGCACACAGAGGAGGATCGAGTCGATCCCCGGCTTGCACATTATCCCTCTCCGGCCT-GCTCAGC
65 AGCACGTAG-GGGGGATCG-GTCGATCCCCGGCTTGCACATTCTACCTCTCCGG-CTGGCTGAGC
* * *
21748362 GCCCACATGCTCGTTTCGTGGGTTGACTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
21748393 GCATACGAAGTTCATTCCCAGTCAAAGATTGAACCGGACCGAGGGTTACGGTAGTAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGATCGACA
* *
21748458 GCATGTAGGGGGGATCAGGTCGATCCCCGGCTTGCACATTCTACCTCTCCAGCTGGCTGAGCGCC
66 GCACGTAGGGGGGATC-GGTCGATCCCCGGCTTGCACATTCTACCTCTCCGGCTGGCTGAGCGCC
* *
21748523 CGCACGCTTGTTTTGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
21748551 GCATACAAAGTTCATTCC
1 GCATACGAAGTTCATTCC
21748569 ATGTGTAAGC
Statistics
Matches: 264, Mismatches: 63, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 5 0.02
158 141 0.53
159 111 0.42
160 7 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGATCGACA
GCACGTAGGGGGGATCGGTCGATCCCCGGCTTGCACATTCTACCTCTCCGGCTGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:21748800 original size:26 final size:26
Alignment explanation
Indices: 21748749--21748800 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21748739 TTGGCTTAGA
* *
21748749 CATACGGAGTTCATTCCATGTCTAAG
1 CATACAGAGTTCATTCCATGTATAAG
21748775 CATACAGAGTTCATTCACA-GTATAAG
1 CATACAGAGTTCATTC-CATGTATAAG
21748801 ATCTGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCATGTATAAG
Found at i:21749152 original size:26 final size:26
Alignment explanation
Indices: 21749116--21749167 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21749106 TTAACTTAGA
*
21749116 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCAAGTCTAAG
*
21749142 CATACGGAGTTCATTCCAAGTCTAAG
1 CATACGGAGTTCATCCCAAGTCTAAG
21749168 ATCGGTCCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCAAGTCTAAG
Found at i:21749605 original size:157 final size:156
Alignment explanation
Indices: 21749140--21749641 Score: 415
Period size: 159 Copynumber: 3.2 Consensus size: 156
21749130 CCCCAGTCTA
* * * * * *
21749140 AGCATACGGAGTTCATTCCAA-GTCTAAGATCGGTCCGGATCGAGGGTTGCGGTAGCAAGATTGG
1 AGCATACAGAGTTCATT-CAATGTCTAAGATCGGACCGGATCGA-GGTTGCGGCAGCAGGATCGA
* * ** * * *
21749204 CAGCACACAAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTTGGCCGACTA-ATT
64 TAGCACGCAAGGGGGACCGAGGTGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGACTAGA-T
* * *
21749268 ACTCGCACGCCCGTTTCATGGGTTGGCTT
128 ACCCGCACGCTCGTTTCGTGGGTTGGCTT
* ** ** * * * *
21749297 AGGCATAGAGAGTTCATTCAATGTCTAAGCCCCAAGCGGATCGAGAATTGTGGCAGCGGGATCGA
1 A-GCATACAGAGTTCATTCAATGTCTAAGATCGGACCGGATCGAG-GTTGCGGCAGCAGGATCGA
* ** ** * *
21749362 TAGAACGCAGAGGGCAACC-AGGTCGATCCTTGGCTTGCGCATTATGCCTCTTCGATCGGCTCAG
64 TAGCACGCA-AGGGGGACCGAGGT-GATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGACT-AG
** * * *
21749426 -TGTCCGCATGCTCATTTCGTGGGTTGACGTTT
126 ATACCCGCACGCTCGTTTCGTGGGTTG--GCTT
*
21749458 A-CATACAGAGTTCATTCCCA-GTCTAAGATCGGACCGGATCGAGGTTGCGGCAGCAGGATCGAT
1 AGCATACAGAGTTCATT-CAATGTCTAAGATCGGACCGGATCGAGGTTGCGGCAGCAGGATCGAT
* * * * *
21749521 AGCACGCAAGGGGGACCGGGGTGATCCCCAGCTTGTGCATTTTGCCTCTTCGGTTGACTGAGAT-
65 AGCACGCAAGGGGGACCGAGGTGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGACT-AGATA
* *
21749585 CCCGTACGCTCGTTTCGTGGGTTGGGTT
129 CCCGCACGCTCGTTTCGTGGGTTGGCTT
* *
21749613 AGGCATACGGAGTTCATTCCATGTCTAAG
1 A-GCATACAGAGTTCATTCAATGTCTAAG
21749642 CATATGGAGT
Statistics
Matches: 264, Mismatches: 66, Indels: 30
0.73 0.18 0.08
Matches are distributed among these distances:
155 4 0.02
156 3 0.01
157 84 0.32
158 78 0.30
159 88 0.33
160 3 0.01
161 4 0.02
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.25
Consensus pattern (156 bp):
AGCATACAGAGTTCATTCAATGTCTAAGATCGGACCGGATCGAGGTTGCGGCAGCAGGATCGATA
GCACGCAAGGGGGACCGAGGTGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGACTAGATACC
CGCACGCTCGTTTCGTGGGTTGGCTT
Found at i:21749644 original size:26 final size:26
Alignment explanation
Indices: 21749615--21749667 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21749605 GTTGGGTTAG
*
21749615 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCAGTACCA-GTCTAA
*
21749641 GCATATGGAGTTCAGTACCAGTCTAA
1 GCATACGGAGTTCAGTACCAGTCTAA
21749667 G
1 G
21749668 ATTTTGAGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAGTACCAGTCTAA
Found at i:21750141 original size:26 final size:26
Alignment explanation
Indices: 21750105--21750157 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21750095 GTTGGCTTAG
21750105 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21750131 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21750157 G
1 G
21750158 GTCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21752241 original size:26 final size:26
Alignment explanation
Indices: 21752204--21752275 Score: 117
Period size: 26 Copynumber: 2.8 Consensus size: 26
21752194 TAGGCACACA
* *
21752204 GAGTTCAACCCCAATCTAAGCATACG
1 GAGTTCATCCCCAGTCTAAGCATACG
21752230 GAGTTCATCCCCAGTCTAAGCATACG
1 GAGTTCATCCCCAGTCTAAGCATACG
*
21752256 GAGTTCATTCCCAGTCTAAG
1 GAGTTCATCCCCAGTCTAAG
21752276 ATCGGATCGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (26 bp):
GAGTTCATCCCCAGTCTAAGCATACG
Found at i:21752811 original size:26 final size:26
Alignment explanation
Indices: 21752776--21752838 Score: 117
Period size: 26 Copynumber: 2.4 Consensus size: 26
21752766 GGAATTCGTC
*
21752776 CCCAGTCTAAGCAAATGCAGTTCATT
1 CCCAGTCTAAGCAAATGCAGCTCATT
21752802 CCCAGTCTAAGCAAATGCAGCTCATT
1 CCCAGTCTAAGCAAATGCAGCTCATT
21752828 CCCAGTCTAAG
1 CCCAGTCTAAG
21752839 ATCAGACCAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (26 bp):
CCCAGTCTAAGCAAATGCAGCTCATT
Found at i:21753300 original size:158 final size:155
Alignment explanation
Indices: 21752823--21753313 Score: 436
Period size: 158 Copynumber: 3.1 Consensus size: 155
21752813 CAAATGCAGC
* * * *
21752823 TCATTCCCA-GTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGATAGCACGTAAGG
1 TCATT-CCATGTCTAAGAT-AGACCAGA-CTAGGGTTACGGTAGCAGGATCGACAGCACGTAA-G
* * * * * *
21752887 GGGACCAGACCGATCTCTGGCTTCCGA-ATTCTGCCTCTCCGGCCGGCTAAGCACCTGCACGC-C
62 GGGACCGGGCCGATCCCTGGCTTGC-ACATTCTGCCTCTCCGACCGGCTAAGCGCCTGCACGCTC
* *
21752950 TATTTCATGGGTTGGCTTAGGCATAGGGAGT
126 -ATTTCGTGGGTTGGCTTAGGCATACGGAGT
** * * * *
21752981 TCATTCCATGTCTAAGCCCCAG-CCGGACCTAGGGTTATGGTAGCGGGACCGACAGCACGTAGAG
1 TCATTCCATGTCTAAG--ATAGACCAGA-CTAGGGTTACGGTAGCAGGATCGACAGCACGTA-AG
* ** * * * *
21753045 GGGCACCGGGCTGATCCCTTACTTGCGCATTATGCCTCTTCGACCGGCTCAA-CGCCCGCACGCT
62 GGG-ACCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGACCGGCT-AAGCGCCTGCACGCT
* *** *
21753109 CGTTTCGTGGGTTAATTTAGGCATATGGAGT
125 CATTTCGTGGGTTGGCTTAGGCATACGGAGT
* *
21753140 TCATTCCCA-GTCTAAGATAGGACTAGATTGAGGGTTACGGTAGCAGGATCGACAGCACGTAAGG
1 TCATT-CCATGTCTAAGATA-GACCAGACT-AGGGTTACGGTAGCAGGATCGACAGCACGTAAGG
* * * * * *
21753204 AGGATCGGGCCGGTCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTAAGCGCCTACATGCTCA
63 -GGACCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGACCGGCTAAGCGCCTGCACGCTCA
* *
21753269 TTTTGTGGGTTGGCTTAGGCATACGAAGT
127 TTTCGTGGGTTGGCTTAGGCATACGGAGT
21753298 TCATTCCATGTCTAAG
1 TCATTCCATGTCTAAG
21753314 CATACGGAGT
Statistics
Matches: 261, Mismatches: 57, Indels: 30
0.75 0.16 0.09
Matches are distributed among these distances:
157 9 0.03
158 132 0.51
159 114 0.44
160 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (155 bp):
TCATTCCATGTCTAAGATAGACCAGACTAGGGTTACGGTAGCAGGATCGACAGCACGTAAGGGGA
CCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGACCGGCTAAGCGCCTGCACGCTCATTTC
GTGGGTTGGCTTAGGCATACGGAGT
Found at i:21753329 original size:26 final size:26
Alignment explanation
Indices: 21753287--21753339 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
21753277 GTTGGCTTAG
21753287 GCATACGAAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCACA-GTCTAA
*
21753313 GCATACGGAGTAT-ATTCACAGTCTAA
1 GCATACGAAGT-TCATTCACAGTCTAA
21753339 G
1 G
21753340 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAGTCTAA
Found at i:21753701 original size:26 final size:26
Alignment explanation
Indices: 21753665--21753717 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21753655 GTTGACTCAG
21753665 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21753691 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21753717 G
1 G
21753718 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21754225 original size:158 final size:157
Alignment explanation
Indices: 21753731--21754232 Score: 495
Period size: 158 Copynumber: 3.2 Consensus size: 157
21753721 AGATCAGATC
* * * * * *
21753731 GAGGGTTGCGACAGCAGTATCGATAGCACGTAGGGGGGACCGGGTCGATCCCCTACTTGCACATT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGGGGACCGGGTCGATCCCCGACTTGCGCATT
* * * * **
21753796 CTACCTCTCTGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTT
66 CTGCCTCTCCGG-CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTT
** * *
21753861 CATTCCATGTCTAAGCCCCAATCGGACC
130 CATTCCATGTCTAAGCCCCAGCCAGACT
** * * *
21753889 GAGGGTTGTGGCAGTGGGATCGACAGCACGCAGAGGGGGACCAGGTCGATCCCCGACTTGTGCAT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGTAG-GGGGGACCGGGTCGATCCCCGACTTGCGCAT
* * * * * * * * * *
21753954 TATGCCTCTCCGATCGGCTTAGCACCTGAATGCTCGTTTCATAGGTTGACCTAGGCATACAGAGT
65 TCTGCCTCTCCG-GCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGT
** * * *
21754019 TCATTCC-TAGTCTAAG-ATCGGACCAAAAT
129 TCATTCCAT-GTCTAAGCCCCAG-CCAGACT
* * * * * * * * * *
21754048 GAAGGTTGCGACAGTAGGATCGACAGCACATAGGGGGGATCGGGTCGGTCCCCGGCTTACGTATT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGGGGACCGGGTCGATCCCCGACTTGCGCATT
* *
21754113 CTGCCTCTCCGGCAGGCTGAGCACCCGCACGCTCGGTTCGTGGGTTGGCTTAGGCATACAAAGTT
66 CTGCCTCTCCGGC-GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTT
21754178 CATTCCATGTCTAAGCCCCAGCCAGACT
130 CATTCCATGTCTAAGCCCCAGCCAGACT
*
21754206 GAGGGTTATGGCAGCAGGATCGACAGC
1 GAGGGTTGTGGCAGCAGGATCGACAGC
21754233 GAAATCGGCA
Statistics
Matches: 266, Mismatches: 71, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
157 1 0.00
158 144 0.54
159 121 0.45
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (157 bp):
GAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGGGGACCGGGTCGATCCCCGACTTGCGCATT
CTGCCTCTCCGGCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTC
ATTCCATGTCTAAGCCCCAGCCAGACT
Found at i:21755036 original size:26 final size:26
Alignment explanation
Indices: 21755000--21755049 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
21754990 GACTTAGGCT
21755000 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
21755026 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
21755050 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:21755342 original size:660 final size:657
Alignment explanation
Indices: 21753614--21755365 Score: 1811
Period size: 660 Copynumber: 2.6 Consensus size: 657
21753604 TCTCTGGCCG
* * ** *
21753614 ACCTCTCCAGCCGGCGGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTCAGGCATACGGAGTTCA
1 ACCTCTCCAGCCGGCTGAGCGCCCGCACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTCA
*
21753679 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AGATCAGATCGAGGGTTGCGAC
66 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ATCAGATCGAGGGTTGCGAC
* * * ** * * ** * * * *
21753743 AGCAGTATCGATAGCACGTAGGGGGGACCGGGTCGATCCCCTACTTGCACATTCTACCTCTCTGG
130 AGCAGGATCGATAGCATGCAGATGGGAACGGGCCGATCCCCGGCTTACGCATTCTGCCTCTC-CG
* *
21753808 CCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
194 CTGGCTGAGCGCCCGCACGCCAGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * **
21753873 AAGCCCCAATCGGACCGAGGGTTGTGGCAGTGGGATCGACAGCACGCAGAGGGGGACCAGGTCGA
259 AAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACTGGGTCGA
* * * *
21753938 TCCCCGACTTGTGCATTATGCCTCTCCGATCGGCTTAGCACCTGAATGCTCGTTTCATAGGTTGA
324 TCCCC-ACTTGTGCATTATGCCTCTCCGATC-GATTAGCACCCGAACGATCGTTTCATAGGTTGA
* * * *
21754003 CCTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGGACCAAAATGAAGGTTGCGACAGTAGGAT
387 CTTAGGCATAC-GAGTTCATTCCCAGTCT---A----ACC---A-GAAGGTTACGACAGCAGGAT
* * ** * * *
21754068 CGACAGCACATAGGGGGGATCGGGTCGGTCCCCGGCTTACGTATTCTGCCTCTCCGGCAGGCTGA
440 CGACAGCACATAGGGGGGATCGGGCCGGTCCCCGACTTACACATTCTACCTCTCCGACAGACTGA
21754133 GCACCCGCACGCTCGGTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCA
505 GCACCCGCACGCTCGGTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCA
* ** * *
21754198 GCCAGACTGAGGGTTATGGCAGCAGGATCGACAGCGAAATCGGCAGCACGTAGAGAGGGATCGAG
570 GCCAGACCGAGGGTTACAGCAGCAGGACCGACAGCGAAATCGGCAGCACGCAGAGAGGGATCGAG
* *
21754263 TTGGTCCCCGGCTCGTGCATTAT
635 TCGATCCCCGGCTCGTGCATTAT
* ** ** * *
21754286 GCCTCTCCAGCTAGCTGAGCGCTTGCACGTTCATTTTATGGGTTGACTTAGGCATACGGAGTTCA
1 ACCTCTCCAGCCGGCTGAGCGCCCGCACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTCA
** * * * * *
21754351 -TCGTAAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGAC
66 TTC-CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGATCGAGGGTTGCGAC
* * * *
21754415 AACAAGATCGGTAGCATGC--ATGGGGAACTAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCC
130 AGCAGGATCGATAGCATGCAGAT-GGGAAC-GGGCCGATCCCCGGCTTACGCATTCTGCCTCTCC
* * **
21754478 GACTGGCTGAGCGCCCGCACACCAATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTATATGT
193 G-CTGGCTGAGCGCCCGCACGCCAGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
* * * * * * * * * * *
21754543 TTAAGCCCCAGCCGGACCGAAGGTTTTGGTAGCGAGACCGGCAGCATGCAGAGGGGGATTGGGCC
257 CTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACTGGGTC
* * * * * *
21754608 GATCCCCGGCTTGTGCATTATGCCTCTTCGATCGGCTCAGCACCCGAACGATCATTTCATCGGTT
322 GATCCCC-ACTTGTGCATTATGCCTCTCCGATC-GATTAGCACCCGAACGATCGTTTCATAGGTT
* * * *
21754673 GAATTAGGCATACGTAGTTCATTCCCAGTCTAACC-GAGGGTTAC-AGCGGCAGGATCGATAGCA
385 GACTTAGGCATACG-AGTTCATTCCCAGTCTAACCAGAAGGTTACGA-CAGCAGGATCGACAGCA
* * * * * *
21754736 CGTAGGGAGGGGTCGGGCCGGTCCTCGACTTTCACATTCTACCTCTCCGACCGACTGAGCGCCCG
448 CATAGGG-GGGATCGGGCCGGTCCCCGACTTACACATTCTACCTCTCCGACAGACTGAGCACCCG
* * ** ** * *
21754801 CACGCTCGTTTCGTGGGTTGGCTTGGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACCGG
512 CACGCTCGGTTCGTGGGTTGGCTTAGGCATACAAAGTTCATT-CCATGTCTAAGCCCCAG-CCAG
* * * * * * *
21754864 ACCGAGGGTTGCAGTAGTAGGACC-AGCAGC-AAGATCGGTAGCATGCAG-GGGGGATCGGGTCG
575 ACCGAGGGTTACAGCAGCAGGACCGA-CAGCGAA-ATCGGCAGCACGCAGAGAGGGATCGAGTCG
* * *
21754926 ATCCTCGGCTTGTGCATTCT
638 ATCCCCGGCTCGTGCATTAT
* * *
21754946 ACCTCTCCGGCCGGCTGAGCACCCGCACGCTCATTTAATGGGTTGACTTAGGCTTACGGAGTTCA
1 ACCTCTCCAGCCGGCTGAGCGCCCGCACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTCA
* * *
21755011 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGATGCGAGA
66 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGATCGAGGGTTGCGACA
* * * * * *
21755076 GCAGGATCGACAGCATGCAGATGGCATCGGGCCAATACCCGGCTTTCGCATTCTGCCTCTCCAGC
131 GCAGGATCGATAGCATGCAGATGGGAACGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCC-GC
* * * * *
21755141 TAGCTGAGCACTCGCATGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
195 TGGCTGAGCGCCCGCACGCCAGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * * *
21755206 AGCCCCAGTCGGACAGAGGGTTGGGGCAGCGGGATCGACAGCACACAAAGGGGGACTGGGTCGAT
260 AGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACTGGGTCGAT
* * * * * * * *
21755271 CCCCATCTTGCGCATTTTGCCTCTCC-AGTCGATTGAGCGCCCGCACGTTCGTTTCGTGGGTTGG
325 CCCCA-CTTGTGCATTATGCCTCTCCGA-TCGATT-AGCACCCGAACGATCGTTTCATAGGTTGA
21755335 CTTAGGCATACGGAGTTCATT-CCATGTCTAA
387 CTTAGGCATAC-GAGTTCATTCCCA-GTCTAA
21755366 GCATACGGAG
Statistics
Matches: 880, Mismatches: 179, Indels: 54
0.79 0.16 0.05
Matches are distributed among these distances:
659 7 0.01
660 386 0.44
661 134 0.15
662 5 0.01
665 3 0.00
669 1 0.00
671 8 0.01
672 336 0.38
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (657 bp):
ACCTCTCCAGCCGGCTGAGCGCCCGCACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGATCGAGGGTTGCGACA
GCAGGATCGATAGCATGCAGATGGGAACGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGCT
GGCTGAGCGCCCGCACGCCAGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
GCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACTGGGTCGATC
CCCACTTGTGCATTATGCCTCTCCGATCGATTAGCACCCGAACGATCGTTTCATAGGTTGACTTA
GGCATACGAGTTCATTCCCAGTCTAACCAGAAGGTTACGACAGCAGGATCGACAGCACATAGGGG
GGATCGGGCCGGTCCCCGACTTACACATTCTACCTCTCCGACAGACTGAGCACCCGCACGCTCGG
TTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTA
CAGCAGCAGGACCGACAGCGAAATCGGCAGCACGCAGAGAGGGATCGAGTCGATCCCCGGCTCGT
GCATTAT
Found at i:21755376 original size:26 final size:26
Alignment explanation
Indices: 21755340--21755392 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21755330 GTTGGCTTAG
21755340 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21755366 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21755392 G
1 G
21755393 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21756400 original size:159 final size:160
Alignment explanation
Indices: 21756197--21756761 Score: 475
Period size: 159 Copynumber: 3.5 Consensus size: 160
21756187 CCTCGGCTTA
** * * * *
21756197 CGCATTCTGCCTCTCCGGCCAGCTAAGTGCCTGCACGC-CTGTTTCATGGGTTGGCTTAGGCATA
1 CGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTC-GTTTCATGGGTTGGCTTAGGCATA
* * ** *
21756261 GGGAGTTCATT-CCATGTCTAAGCCCTAGCCGAACCTAGGGTTATGGTAGCGGGACCGATAGCAC
65 CGGAGTTCATTCCCA-GTCTAAGCCCTAGCCGGACCTAGGGTTGCGGTAGCAGGACCGATAGCAC
21756325 GTAGAAAGGGATCGAGTCGATCCCCTG-CTTG
129 GTAGAAAGGGATCGAGTCGATCCCCTGACTTG
* * * * *
21756356 CGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGGATAC
1 CGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
* ** ** * * * *
21756421 GGAGTTCATTCCCAATCTAAG-ATTGAATCGGACCGAGGGTTGCGGTAACAGGATCGACAGCACG
66 GGAGTTCATTCCCAGTCTAAGCCCT-AGCCGGACCTAGGGTTGCGGTAGCAGGACCGATAGCACG
* *** * *
21756485 CAGGGGGGGATCGGGCCGAT-CCCTGACTTG
130 TAGAAAGGGATCGAGTCGATCCCCTGACTTG
* **
21756515 CGCATTCTGCCTCTCCGA-CTGGCTGAGCGCCCGCACACTCGTTTTGTGGGTTGGCTTAGGCATA
1 CGCATTCTGCCTCTCCGATC-GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
* **
21756579 TGGAGTTCATTCCCAGTCTAAGATC-AGACCGGA-CTGAGGGTTGCGGTAGCAGGACC-AGTAGC
65 CGGAGTTCATTCCCAGTCTAAGCCCTAG-CCGGACCT-AGGGTTGCGGTAGCAGGACCGA-TAGC
* * *
21756641 AGGATCGACAGCCTGTAGGGGGGATCGAGTCGATCCTC-GACTTG
127 ACG-TAGA-A------A---GGGATCGAGTCGATCCCCTGACTTG
* * * * * *
21756685 CGCATTTTGCCTTTCCGGTCGGCTGAGCGTCCGTACGCTCGTTTCATGGGTTAGCTTAGGCATAC
1 CGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
*
21756750 AGAGTTCATTCC
66 GGAGTTCATTCC
21756762 ATGTCTAGGC
Statistics
Matches: 318, Mismatches: 66, Indels: 33
0.76 0.16 0.08
Matches are distributed among these distances:
158 10 0.03
159 218 0.69
160 5 0.02
170 82 0.26
171 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (160 bp):
CGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGCCCTAGCCGGACCTAGGGTTGCGGTAGCAGGACCGATAGCACGT
AGAAAGGGATCGAGTCGATCCCCTGACTTG
Found at i:21756966 original size:26 final size:26
Alignment explanation
Indices: 21756930--21756982 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21756920 GTTGACTTAG
*
21756930 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21756956 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21756982 G
1 G
21756983 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21757455 original size:26 final size:26
Alignment explanation
Indices: 21757419--21757471 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21757409 GTTGGCTTAG
21757419 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
21757445 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21757471 G
1 G
21757472 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21757961 original size:25 final size:26
Alignment explanation
Indices: 21757910--21757961 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21757900 GTTGACTTAG
21757910 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21757936 GCATACGGAGTTCAT-TCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21757961 G
1 G
21757962 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21758090 original size:26 final size:26
Alignment explanation
Indices: 21758040--21758092 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21758030 GTTGGCTTAG
*
21758040 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
21758066 GCATACAGAGTTCATTCC-TAATCTAA
1 GCATACAGAGTTCATTCCAT-ATCTAA
21758092 G
1 G
21758093 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:21758272 original size:26 final size:26
Alignment explanation
Indices: 21758236--21758288 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21758226 GTTGGCTTAG
*
21758236 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
21758262 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
21758288 G
1 G
21758289 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:21758639 original size:159 final size:158
Alignment explanation
Indices: 21758270--21758661 Score: 373
Period size: 159 Copynumber: 2.5 Consensus size: 158
21758260 AAGCATAAGG
* * * * **
21758270 AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCTA-GATCGACAGCATGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAG-TAGGATCGACAGCACCCA
* * * * * * *
21758334 GGGGGGACCGGGCCTATCCCCGGTTTGCGCATTCTGCCTCTCCGGCCGGATGAGCGCCCGCACGC
65 GGGGGGACCGAGCCTATCCCCGGCTTGCACATTATGCCTCTCCCGCCAGATGAGCGCCCGAACGC
* * * *
21758399 CCGTTTCGTGGGTTGGCTTAGGCATAGGG
130 CCGTTTCATGGGTTGACTTAGGCATACGA
* ** * *
21758428 AGTTTATT-CCATGTCTAAGCCCCAG-CCAGACC-AAGGGTTGTGGCA-TCGGGATCGACAGCAC
1 AGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAA-GGTTGCGGCAGT-AGGATCGACAGCAC
* * * *
21758489 CCTGAGGGGGACCGAG-CTGATCCCCGGCTTGCACATTATGCCTCTCCCTCCAGCTTAGCGCCCG
62 CCAG-GGGGGACCGAGCCT-ATCCCCGGCTTGCACATTATGCCTCTCCCGCCAGATGAGCGCCCG
*
21758553 AACGCTCGTTTCATGGGTTGACTTAGGCATACGA
125 AACGCCCGTTTCATGGGTTGACTTAGGCATACGA
* * * * **
21758587 AGTTCATTCCCAGTCTAAGATCAGATCAAACCGAAGGTTGCGACAGTAGGATCGATAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAGTAGGATCGACAGCACCCA-
21758652 GGGGGGACCG
65 GGGGGGACCG
21758662 GGTCAGTCCT
Statistics
Matches: 183, Mismatches: 39, Indels: 23
0.75 0.16 0.09
Matches are distributed among these distances:
156 1 0.01
157 4 0.02
158 45 0.25
159 126 0.69
160 7 0.04
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAGTAGGATCGACAGCACCCAG
GGGGGACCGAGCCTATCCCCGGCTTGCACATTATGCCTCTCCCGCCAGATGAGCGCCCGAACGCC
CGTTTCATGGGTTGACTTAGGCATACGA
Found at i:21759268 original size:26 final size:26
Alignment explanation
Indices: 21759238--21759290 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21759228 GTTGACTTAG
*
21759238 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
21759264 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21759290 G
1 G
21759291 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21759570 original size:159 final size:158
Alignment explanation
Indices: 21759307--21759608 Score: 423
Period size: 159 Copynumber: 1.9 Consensus size: 158
21759297 CCAGACTGAA
* * *
21759307 GGTTGTGGCAGCAGGATCGGCAGTACACAGAGGGGACCGTGCCGTTCCCCGGCTTACGCATTCTG
1 GGTTGTGGCAGCAGGATCAGCAGCACACAGAGGGGACCGTGCCATTCCCCGGCTTACGCATTCTG
* * * *
21759372 CCTCTCCGGTTGGCTGAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTT-A
66 CCTCTCCAGTCGGCTGAGCGCCCGCACACCTGTTGCATGGGTTGGCTTAGGCATAGGGA-TTTCA
21759436 TTCCATGTCTAAGCCCCAGCTGGATCGAG
130 TTCCATGTCTAAGCCCCAGCTGGATCGAG
* * * *
21759465 GGTTGTGGCAGCGGGATCAGCAGCACGCAGAGGGGGACCAG-GCCCATT-CTCGGCTTACGCTTT
1 GGTTGTGGCAGCAGGATCAGCAGCACACAGA-GGGGACC-GTG-CCATTCCCCGGCTTACGCATT
*
21759528 CTGCCTCTCCAGTCGGCTGAGCGCCCGCACA-CTCGTTGCATGGGTTGGCTTAGGCATATGGATT
63 CTGCCTCTCCAGTCGGCTGAGCGCCCGCACACCT-GTTGCATGGGTTGGCTTAGGCATAGGGATT
21759592 TCATTCCATGTCTAAGC
127 TCATTCCATGTCTAAGC
21759609 ATACGGAGTT
Statistics
Matches: 127, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
158 32 0.25
159 90 0.71
160 5 0.04
ACGTcount: A:0.16, C:0.28, G:0.31, T:0.24
Consensus pattern (158 bp):
GGTTGTGGCAGCAGGATCAGCAGCACACAGAGGGGACCGTGCCATTCCCCGGCTTACGCATTCTG
CCTCTCCAGTCGGCTGAGCGCCCGCACACCTGTTGCATGGGTTGGCTTAGGCATAGGGATTTCAT
TCCATGTCTAAGCCCCAGCTGGATCGAG
Found at i:21759620 original size:26 final size:26
Alignment explanation
Indices: 21759581--21759633 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21759571 GTTGGCTTAG
* *
21759581 GCATATGGATTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21759607 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21759633 G
1 G
21759634 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21760333 original size:26 final size:26
Alignment explanation
Indices: 21760304--21760356 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21760294 GTTGACTTAG
*
21760304 GCATACGAAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
21760330 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21760356 G
1 G
21760357 ATAGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21760815 original size:158 final size:157
Alignment explanation
Indices: 21760330--21760851 Score: 518
Period size: 158 Copynumber: 3.3 Consensus size: 157
21760320 CCCAGTCTAA
* * *
21760330 GCATACGGAGTTCATTCCCAGTCTAAGAT-AGGATCGGA-TCGAGGGTTGCGACAGTAGGATCGA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCA-GACCGGACT-GAGGGTTACGACAGCAGGATCGA
* * * * * * *
21760393 CAGCATGTAGGGGGGACCGGGCCAATCCCCGACTTGCACATTCTGCCTCT-CTGGTCGGCTGAGT
63 CAGCACGTAGGGGGGACCGGGTCAGTCCCCGACTTGCGCATTCTGCCTCTCCAGCT-GGCTGAGC
* *
21760457 GCCCGCACACCCGTTTCGTGGGTTGGCTTAG
127 ACCCGCACACTCGTTTCGTGGGTTGGCTTAG
* * * * * * *
21760488 GCATAGGGAGTTCATTCCATGTCTAA-ACCCCAG-TCGGACTGAGGGTTATGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCA-GTCTAAGA--TCAGACCGGACTGAGGGTTACGACAGCAGGATCGA
* * * * * * *
21760551 CAGCACGTAGAGGGGGATCGGGTC-GATCCCCGGCTTGCGCATTATACCTC-CCCGACCGGCTTA
63 CAGCACGTAG-GGGGGACCGGGTCAG-TCCCCGACTTGCGCATTCTGCCTCTCCAG-CTGGCTGA
* * **
21760614 GCACCCGCACACTCATTTTGTGGGTTAACTTAG
125 GCACCCGCACACTCGTTTCGTGGGTTGGCTTAG
* * * *
21760647 GCATATGGAGTTCATTCGCAGTCTAAGATCAGCCCGGACTGAGGGTTACGATAGCAAGATCGACA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCAGGATCGACA
* * *
21760712 GCACGTAGGGGGGACCGGGTCAGTCCTCGACTTGCGCATTCTGCCTCTCCAGCTGACTGAGCACT
65 GCACGTAGGGGGGACCGGGTCAGTCCCCGACTTGCGCATTCTGCCTCTCCAGCTGGCTGAGCACC
* *
21760777 CGCACGCTCGTTTCATGGGTTGGCTTAG
130 CGCACACTCGTTTCGTGGGTTGGCTTAG
* *
21760805 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTT
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACTGAGGGTT
21760852 GTGGCAGTAG
Statistics
Matches: 293, Mismatches: 56, Indels: 30
0.77 0.15 0.08
Matches are distributed among these distances:
157 5 0.02
158 159 0.54
159 125 0.43
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCAGGATCGACAG
CACGTAGGGGGGACCGGGTCAGTCCCCGACTTGCGCATTCTGCCTCTCCAGCTGGCTGAGCACCC
GCACACTCGTTTCGTGGGTTGGCTTAG
Found at i:21761026 original size:26 final size:26
Alignment explanation
Indices: 21760989--21761041 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21760979 GTTGACTTAG
21760989 GCATACGTAGTTCATCCCTAGTCTAA
1 GCATACGTAGTTCATCCCTAGTCTAA
*
21761015 GCATACAG-AGTTCATTCCTAGTCTAA
1 GCATAC-GTAGTTCATCCCTAGTCTAA
21761041 G
1 G
21761042 ATCAAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGTAGTTCATCCCTAGTCTAA
Found at i:21762613 original size:26 final size:26
Alignment explanation
Indices: 21762565--21762617 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21762555 TTTGACTTAG
*
21762565 GCATACGGAGTCCATCCCCAGTCTAA
1 GCATACGAAGTCCATCCCCAGTCTAA
* * *
21762591 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTCCATCCCCAGTCTAA
21762617 G
1 G
21762618 ATCGAATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTCCATCCCCAGTCTAA
Found at i:21763050 original size:158 final size:158
Alignment explanation
Indices: 21762630--21764054 Score: 958
Period size: 158 Copynumber: 8.9 Consensus size: 158
21762620 CGAATTGGAT
* * * * *
21762630 CGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGTGCCGATCCCCGGCTTGCGCAT
1 CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGGACTGGGCCGATCCCCGACTTGCGCAT
** * * * ** * *
21762695 TCTGCCTCTCCGGTCGATTGAGTGCCCGTACG-TCCATTTTGTCGGTT-AGCTTAGGCATAGGGA
66 TCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCT-CGTTTCATGGGTTGA-CTTAGGCATACGGA
* *
21762758 GTTCATT-CCATGTCTAAGCCCCA-ACCAAAC
129 GTTCATTCCCA-GTCTAAG-ACCAGACCAGAC
* * * * * ** * * *
21762788 CAAGGGCTGTGGCAACGGGACCGGTAGCATGCTGAGGGGGA-TCGGGCCAATCCCCGACTTGCGC
1 CGAGGGTTGTGGCAGCAGGATCGACAGCACGC-AAGGGGGACT-GGGCCGATCCCCGACTTGCGC
* * * * * *
21762852 ATTATGCCTCTTCGG-CTGGCTCAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACAG
64 ATTCTGCCTCTCCGGTC-GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
*
21762916 AGTTCATTCCCAGTCTAAGATCAGACCAGAC
128 AGTTCATTCCCAGTCTAAGACCAGACCAGAC
* * * *
21762947 CGAGGGTTGTGGCAGCAGGATCGACAGTACGCAAGGGGGACTGGGCTGGTCCCCGACTTACGCAT
1 CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGGACTGGGCCGATCCCCGACTTGCGCAT
* ** * * * * * * *
21763012 TCTGCCTCTCCGGCCTACTGAACGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGT
66 TCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* *
21763077 TCATT-CCACGTCTAAGCCCCAG--CAGGAT
131 TCATTCCCA-GTCTAAG-ACCAGACCA-GAC
* * * *** * * *
21763105 CGAGGGTTGTGGCAGCGGGA-CTGACAGCATGCAGAGGAGGGTC-GGGGAAATCCCTGGCTTGCA
1 CGAGGGTTGTGGCAGCAGGATC-GACAGCACGCA-AGG-GGGACTGGGCCGATCCCCGACTTGCG
* * * * *
21763168 CATTCTGCCTCTCCGGCCGGTTGAGTGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
63 CATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * * *
21763233 AGTTCATT-CCATGTGTAAGCCCCAG-TCAGAA
128 AGTTCATTCCCA-GTCTAAG-ACCAGACCAGAC
* * * * **
21763264 TGAGGGTTGCGGCAGCAGGACCAGCAGCAGGAATGGCAACACGCAGGGGGGACCAGGCCGATCCC
1 CGAGGGTTGTGGCAGCAGGATC-G-A-C----A--G---CACGCAAGGGGGACTGGGCCGATCCC
* * ** * * * *
21763329 CGCCTTGCGTATTCTTTCTCTCCAGTCGGCTGAGCACCCGCACACTCGTTTCATGGGTTGGCTTA
54 CGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
* *
21763394 GGCATACAGAGTTCATTCCACA-TCTAAGCCCCAG-CCAGAC
119 GGCATACGGAGTTCATTCC-CAGTCTAAG-ACCAGACCAGAC
* * ** * * * **
21763434 TGAGGGTTCTGGTTG--TGACACGACAGCACGCAGAGGGGGA-TCGGCCTGATCCCCGGGTTGCG
1 CGAGGGTTGTGGCAGCAGGA-TCGACAGCACGCA-AGGGGGACTGGGCC-GATCCCCGACTTGCG
* * * * * * ** *
21763496 TATTTTGCCTCTTCGGTCGGCTCAGTGCCCGAACGCTCGTTTTGTGGGTTGACTTAGGCATACGA
63 CATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * * * *
21763561 ATTTCATTTCCAGTCTAAGATCGGACCGGAC
128 AGTTCATTCCCAGTCTAAGACCAGACCAGAC
* * * *
21763592 CGAGGGTTGTGCCAGCAGGATCGACAGCACCCAAGGGGGCACCGGGCCG-TCCCTGACTTGCGCA
1 CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGG-ACTGGGCCGATCCCCGACTTGCGCA
* * * **
21763656 TTTTGCCTCTCCGGTCTGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAG
65 TTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
*** * * *
21763721 TTCATTCCCAGTCTAAGATTGGATCGGAT
130 TTCATTCCCAGTCTAAGACCAGACCAGAC
* * * * * * *
21763750 CGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGGACTGGGTCGGTCCTC-AGCTTGTGCA
1 CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGGACTGGGCCGATCCCCGA-CTTGCGCA
* * * * * * *
21763814 TTCTGCCTCTCCGATCGGCTGAGCGCCCACATGCCCGTTTCATGGGTTGGCTTAGGAATAGGGAG
65 TTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
* * *
21763879 TTCATT-CCATGTGTAAGCCCTAG-CCGGAC
130 TTCATTCCCA-GTCTAAGACC-AGACCAGAC
** *
21763908 CGAGGGTTGTGGCAGTGGGA-CTGATAGCACGCAGAGGGGGA-TCGGGCCGATCCCC-AGCTTGC
1 CGAGGGTTGTGGCAGCAGGATC-GACAGCACGCA-AGGGGGACT-GGGCCGATCCCCGA-CTTGC
* ** * * ** * *
21763970 GCATTATGCCTCTCCGACCGGCTTAGC-ACCAAATGCTCGTTTCGTGGGTTGACTTAGGCATACG
62 GCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
21764034 GAGTTCATTCCCAGTCTAAGA
127 GAGTTCATTCCCAGTCTAAGA
21764055 TTGGATCGAA
Statistics
Matches: 997, Mismatches: 222, Indels: 96
0.76 0.17 0.07
Matches are distributed among these distances:
157 32 0.03
158 526 0.53
159 293 0.29
160 20 0.02
161 1 0.00
162 2 0.00
166 2 0.00
167 1 0.00
168 4 0.00
169 5 0.01
170 103 0.10
171 6 0.01
172 2 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGGACTGGGCCGATCCCCGACTTGCGCAT
TCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
TCATTCCCAGTCTAAGACCAGACCAGAC
Found at i:21763179 original size:317 final size:314
Alignment explanation
Indices: 21762591--21764053 Score: 1033
Period size: 317 Copynumber: 4.6 Consensus size: 314
21762581 CCCAGTCTAA
* *** * *
21762591 GCATACGAAGTTCATTCCTAGTCTAAGATC-GAATTGGATCGAGGGTTGTGGCAGCAGGATCGGC
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * **
21762655 AGCACGCAGGGGGGACCGTGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGATTGAGTGC
65 AGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCAC
* * ** * * ** * *
21762720 CCGTACGTCCATTTTGTCGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCA
130 CCGCACGCCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCACGTCTAAGCCCC-AGCA
* * * * ** * * *
21762785 AACCAAGGGCTGTGGCAACGGGACCGGTAGCATGCTGAGGGGGATCGGGCCAATCCCCGACTTGC
194 GA-CGAGGGTTGTGGCAGCGGGA-CGACAGCATGCAGAGGGGGATCGGGCAAATCCCCGGCTTGC
* * *
21762850 GCATTATGCCTCTTCGGCTGGCTCAGCGCCCGTACGCTCATTTCATGGGTTGACTTAG
257 GCATTATGCCTCTTCGGCTGGCTCAGTGCCCGAACGCTCGTTTCATGGGTTGACTTAG
21762908 GCATAC-AGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * * * *
21762972 AGTACGCAAGGGGGACTGGGCTGGTCCCCGACTTACGCATTCTGCCTCTCCGGCCTACTGAACGC
65 AGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCAC
* * **
21763037 CCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAGCAG
130 CCGCACGCCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCACGTCTAAGCCCCAGCA-
* *
21763102 GATCGAGGGTTGTGGCAGCGGGACTGACAGCATGCAGAGGAGGG-TCGGGGAAATCCCTGGCTTG
194 GA-CGAGGGTTGTGGCAGCGGGAC-GACAGCATGCAGAGG-GGGATCGGGCAAATCCCCGGCTTG
* * * * * * *
21763166 CACATTCTGCCTCTCCGGCCGGTTGAGTGCCC-ACACGCTCGTTTCATGGGTTGGCTTAG
256 CGCATTATGCCTCTTCGGCTGGCTCAGTGCCCGA-ACGCTCGTTTCATGGGTTGACTTAG
* * ** * ** * *
21763225 GCATACGGAGTTCATT-CCATGTGTAAGCCCCAG-TCAGAATGAGGGTTGCGGCAGCAGGACCAG
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGCAGGATC-G
* * * * ** *
21763288 CAGCAGGAATGGCAACACGCAGGGGGGACCAGGCCGATCCCCGCCTTGCGTATTCTTTCTCTCCA
63 -A-C----A--G---CACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCG
* * * * *
21763353 GTCGGCTGAGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCACATC
117 GTCGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCACGTC
* ** * ** * * **
21763418 TAAGCCCCAGCCAGACTGAGGGTTCTGGTTGTGACACGACAGCACGCAGAGGGGGATCGGCCTGA
182 TAAGCCCCAG-CAGAC-GAGGGTTGTGGCAGCGGGACGACAGCATGCAGAGGGGGATCGGGCAAA
* * * **
21763483 TCCCCGGGTTGCGTATTTTGCCTCTTCGG-TCGGCTCAGTGCCCGAACGCTCGTTTTGTGGGTTG
245 TCCCCGGCTTGCGCATTATGCCTCTTCGGCT-GGCTCAGTGCCCGAACGCTCGTTTCATGGGTTG
21763547 ACTTAG
309 ACTTAG
* * * * *
21763553 GCATACGAATTTCATTTCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGCCAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * *
21763618 GCACCCAAGGGGGCACCGGGCCG-TCCCTGACTTGCGCATTTTGCCTCTCCGGTCTG-CTGAGCA
66 GCACGCAAGGGGG-ACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTC-GACTGAGCA
* * * * **** *
21763681 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCC-CAGTCTAAGATTGGAT
129 CCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAC-GTCTAAG-CCCCAG
* * * * * ** * *
21763745 CGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAG-GGGGGA-CTGGGTC-GGTCCTCAGC
192 CAGA-CGAGGGTTGTGGCAGCGGGA-CGACAGCATGCAGAGGGGGATC-GGG-CAAATCCCCGGC
* * * * * * * * *
21763807 TTGTGCATTCTGCCTC-TCCGATCGGCTGAGCGCCC-ACATGCCCGTTTCATGGGTTGGCTTAG
253 TTGCGCATTATGCCTCTTCGGCT-GGCTCAGTGCCCGA-ACGCTCGTTTCATGGGTTGACTTAG
* * * * ** * **
21763869 GAATAGGGAGTTCATT-CCATGTGTAAGCCCTAG-CCGGACCGAGGGTTGTGGCAGTGGGA-CTG
1 GCATACGAAGTTCATTCCCA-GTCTAAGATC-AGACCAGACCGAGGGTTGTGGCAGCAGGATC-G
* * * ** * *
21763931 ATAGCACGCAGAGGGGGATCGGGCCGATCCCC-AGCTTGCGCATTATGCCTCTCCGACCGGCTTA
63 ACAGCACGCA-AGGGGGACCGGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGGTCGACTGA
** * * * * * *
21763995 GCA-CCAAATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-CAGTCTAAG
126 GCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAC-GTCTAAG
21764054 ATTGGATCGA
Statistics
Matches: 912, Mismatches: 189, Indels: 91
0.77 0.16 0.08
Matches are distributed among these distances:
315 10 0.01
316 284 0.31
317 358 0.39
318 8 0.01
319 2 0.00
320 1 0.00
321 1 0.00
324 1 0.00
325 1 0.00
326 2 0.00
327 6 0.01
328 116 0.13
329 120 0.13
330 2 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (314 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACC
CGCACGCCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCACGTCTAAGCCCCAGCAGA
CGAGGGTTGTGGCAGCGGGACGACAGCATGCAGAGGGGGATCGGGCAAATCCCCGGCTTGCGCAT
TATGCCTCTTCGGCTGGCTCAGTGCCCGAACGCTCGTTTCATGGGTTGACTTAG
Found at i:21764234 original size:26 final size:26
Alignment explanation
Indices: 21764198--21764276 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
21764188 GTTGACTTAG
21764198 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21764224 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21764250 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21764276 G
1 G
21764277 ATTGGATTGG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21765318 original size:26 final size:26
Alignment explanation
Indices: 21765289--21765341 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21765279 GTTGACATAG
* *
21765289 GCATACGGAGTTCATCCCCTGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
21765315 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21765341 G
1 G
21765342 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21765802 original size:158 final size:158
Alignment explanation
Indices: 21765315--21766133 Score: 743
Period size: 158 Copynumber: 5.2 Consensus size: 158
21765305 CCCTGTCTAA
* * * * * * *
21765315 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCACCAGGATCTGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGAACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * *
21765380 GCACACAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCT-TTCCGGCTGGTTGAGTGC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTT-CGGCTGGCTGAGTGC
* *
21765444 CCGCACGCCCGTTTCACGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * * * *
21765473 GCATAGGGAGTTCATTCCAAGTCTAAG-CCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCGA-CCGAACCGAGGGTTGTGGCAGCAGGATCGGC
** * * * * *
21765537 AATATGCAGAGGGGGACTGGGCCGATCCTCGGCTTGCACATTATGCCTCTACGG-TCGGCAT-AG
65 AGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCT-GGC-TGAG
* * *
21765600 TGCCCGAACGCTCGTTTCATGGGTTGACTTAA
127 TGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** *
21765632 GAATACGAAGTTCATTCCCAGTCTAAGATTGGACCGAACTGAGGGTTGTGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGAACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * * * * * *
21765697 GCACGCAGGGGGGATCGGGCCAATCCCTGACTTGCACATTCTGCCTCTTCGGCTGACTGAGTACC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCTGGCTGAGTGCC
* *
21765762 CGCACG-TCGGTTTCATGGATTGGTTTAG
131 CGCACGCTC-GTTTCATGGGTTGGCTTAG
* ** * * *
21765790 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCCGACCGAACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * * ** *
21765854 AGCACACAGAGGGGGACCGGGCCGTTCCCCGGCTTGCGCATTATGCCTCTTTGACCGGCTCTGCG
65 AGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCTGGCTGAGTG
* * * *
21765919 CTCGCACGCTCGTTTCTTGGGTTGACTTAT
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * * *
21765949 GCATACAGAGTTCATTCTCAATCTAAGATCAGACTGAACCGAGGGTTGTGGTAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGAACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * * * * * *
21766014 ACACGTAGGGGGGACCGAGCCAATCCCCGGCTTGCGCATTTTGCCTCTTCGACTGACTGAGCGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCTGGCTGAGTGCC
* * *
21766079 CGTACGCTCGTTTAATGGTTTGGCTTAG
131 CGCACGCTCGTTTCATGGGTTGGCTTAG
*
21766107 GCATACGAAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
21766134 CATACGGAGT
Statistics
Matches: 517, Mismatches: 130, Indels: 28
0.77 0.19 0.04
Matches are distributed among these distances:
157 10 0.02
158 264 0.51
159 236 0.46
160 7 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGAACCGAGGGTTGTGGCAGCAGGATCGGCA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCTGGCTGAGTGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:21765898 original size:317 final size:316
Alignment explanation
Indices: 21765312--21766134 Score: 997
Period size: 317 Copynumber: 2.6 Consensus size: 316
21765302 ATCCCCTGTC
* * * * * *
21765312 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCACCAGGATCT
1 TAAGAATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGCAGGATCG
* * * **
21765377 GCAGCACACAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCT-TTCCGGCTGGTTGAG
66 GCAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTT-CGGCTGACTGAG
* * * * *
21765441 TGCCCGCACGCCCGTTTCACGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAG
130 TGCCCGCACG-TCGTTTCATGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA
* * * * ** * *
21765506 TCGGACCGAGGGTTGTGGCAGCGGGACCGGTAATATGCAGAGGGGGACTGGGCCGATCCTCGGCT
194 CCGAACCGAGGGTTGTGGCAGCGGGACCGGCAACACACAGAGGGGGACCGGGCCGATCCCCGGCT
** *
21765571 TGCACATTATGCCTCTACGGTCGGCATAGTGC-C-CGAACGCTCGTTTCATGGGTTGACT
259 TGCACATTATGCCTCTACGACCGGC-T-CTGCGCTCGAACGCTCGTTTCATGGGTTGACT
* *
21765629 TAAGAATAC-GAAGTTCATTCCCAGTCTAAGATTGGACCGAACTGAGGGTTGTGGCAGCAGGATC
1 TAAGAATACAG-AGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGCAGGATC
* * * *
21765693 GGCAGCACGCAGGGGGGATCGGGCCAATCCCTGACTTGCACATTCTGCCTCTTCGGCTGACTGAG
65 GGCAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGGCTGACTGAG
* *
21765758 TACCCGCACGTCGGTTTCATGGATTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA
130 TGCCCGCACGTC-GTTTCATGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA
* *
21765823 CCGAACCGAGGGTTGTGGCAGCGGGACCGGCAGCACACAGAGGGGGACCGGGCCGTTCCCCGGCT
194 CCGAACCGAGGGTTGTGGCAGCGGGACCGGCAACACACAGAGGGGGACCGGGCCGATCCCCGGCT
* ** * *
21765888 TGCGCATTATGCCTCTTTGACCGGCTCTGCGCTCGCACGCTCGTTTCTTGGGTTGACT
259 TGCACATTATGCCTCTACGACCGGCTCTGCGCTCGAACGCTCGTTTCATGGGTTGACT
* * * * * * * *
21765946 TATGCATACAGAGTTCATTCTCAATCTAAGATCAGACTGAACCGAGGGTTGTGGTAGCAAGATCG
1 TAAGAATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGCAGGATCG
* * * * * * *
21766011 ACAACACGTAGGGGGGACCGAGCCAATCCCCGGCTTGCGCATTTTGCCTCTTCGACTGACTGAGC
66 GCAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGGCTGACTGAGT
* * * * *
21766076 GCCCGTACGCTCGTTTAATGGTTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
131 GCCCGCACG-TCGTTTCATGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
21766135 ATACGGAGTT
Statistics
Matches: 429, Mismatches: 70, Indels: 14
0.84 0.14 0.03
Matches are distributed among these distances:
315 3 0.01
316 4 0.01
317 417 0.97
318 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (316 bp):
TAAGAATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGCAGGATCG
GCAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGGCTGACTGAGT
GCCCGCACGTCGTTTCATGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACC
GAACCGAGGGTTGTGGCAGCGGGACCGGCAACACACAGAGGGGGACCGGGCCGATCCCCGGCTTG
CACATTATGCCTCTACGACCGGCTCTGCGCTCGAACGCTCGTTTCATGGGTTGACT
Found at i:21766136 original size:26 final size:25
Alignment explanation
Indices: 21766107--21766157 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
21766097 TTTGGCTTAG
21766107 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCA-GTCTAA
*
21766133 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGAAGTTCATTCCAGTCTAA
21766158 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAGTCTAA
Found at i:21767177 original size:26 final size:26
Alignment explanation
Indices: 21767147--21767199 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21767137 GTTAATTGAG
21767147 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21767173 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21767199 G
1 G
21767200 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21767541 original size:171 final size:169
Alignment explanation
Indices: 21767173--21767541 Score: 418
Period size: 171 Copynumber: 2.2 Consensus size: 169
21767163 CCATGTCTAA
** ** *
21767173 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGACCAGCA
1 GCATACGGAGTTCA-TCCCAGTCTAAGCCCCAACCAAACCGAGGGTTGCGACAGCAGGACCAGCA
* * * * * * *
21767238 GCAGGATCGGCAGCACGCAGGGGGGATCGGGTCGATCTCTGACTTGCGCATTCTACCTCTCCGAT
65 GCAGGATCGACAGCACGCAAGGGGGACCGGGTCGATCCCCGACTTGCGCATTATACCTCTCAGAT
* *
21767303 CGGCTGAGCGCTCGCATGCTCATTTCATGGCTTGGCTTAG
130 CGGCTGAGCGCCCGCATGCTCATTTCATGGCTTGACTTAG
* * * *
21767343 GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGAGGGTTGTGGCAGCATGACCAGCA
1 GCATACGGAGTTCATCCCA-GTCTAAGCCCCAACCAAACCGAGGGTTGCGACAGCAGGACCAGCA
* *
21767408 GCGGGATCGACTA-CACGCATAGGGGGACCGGG-CTGATCCCCGACTTGCGCATTATGCCTCTCA
65 GCAGGATCGAC-AGCACGCA-AGGGGGACCGGGTC-GATCCCCGACTTGCGCATTATACCTCTCA
* * * * * *
21767471 GATTGGGTGAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAG
127 GATCGGCTGAGCGCCCGCATGCTCATTTCATGGCTTGACTTAG
* *
21767514 GCATACAGAGTTCATCCCCAATCTAAGC
1 GCATACGGAGTTCAT-CCCAGTCTAAGC
21767542 ATACGAGTTC
Statistics
Matches: 165, Mismatches: 29, Indels: 9
0.81 0.14 0.04
Matches are distributed among these distances:
169 4 0.02
170 67 0.41
171 91 0.55
172 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (169 bp):
GCATACGGAGTTCATCCCAGTCTAAGCCCCAACCAAACCGAGGGTTGCGACAGCAGGACCAGCAG
CAGGATCGACAGCACGCAAGGGGGACCGGGTCGATCCCCGACTTGCGCATTATACCTCTCAGATC
GGCTGAGCGCCCGCATGCTCATTTCATGGCTTGACTTAG
Found at i:21767551 original size:25 final size:26
Alignment explanation
Indices: 21767514--21767565 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
21767504 GTTGACTTAG
21767514 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
21767540 GCATAC-GAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
21767565 G
1 G
21767566 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:21767595 original size:354 final size:350
Alignment explanation
Indices: 21766895--21767875 Score: 1007
Period size: 354 Copynumber: 2.8 Consensus size: 350
21766885 TAAGATCGAT
* * * * **
21766895 AGCACGTAGGGGGGATCTGGTCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGCCTGCTGAGCGC
1 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGATCTGCTGAGCGC
* * *
21766960 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATTGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
66 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * *
21767025 GACCGAGGGTTGT-G--G--TAGTGGGATTGGCAGCACGCAGAGGGGATCGGGTCGATCCCCGGC
131 GACCGAGGGTTGTGGCAGCATAGCGGGATCGACAGCACGCAGAGGGGACCGGGTCGATCCCCGAC
* *
21767085 TTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGTACGCTCGTTTCATGGGTTAATTGAGGCA
196 TTGCGCATTATGCCTCTCAGATCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTAATTGAGGCA
* * * *
21767150 TACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
261 TACAGAGTTCATCCCATATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGA
21767215 GGGTTGCGACAGCAGGACCAGCAGCAGGATCGGC
326 GGGTT-----AG-AGG---AGCAGCAGGATCGGC
* * * *
21767249 AGCACGCAGGGGGGATCGGGTCGATCTCTGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCGC
1 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGATCTGCTGAGCGC
* * * * * * *
21767314 TCGCATGCTCATTTCATGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCA
66 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* *
21767379 AACCGAGGGTTGTGGCAGCATGACCAGCAGCGGGATCGACTA-CACGCATAGGGGGACCGGG-CT
131 GACCGAGGGTTGTGGCAGCAT-------AGCGGGATCGAC-AGCACGCAGA-GGGGACCGGGTC-
* * * * * *
21767442 GATCCCCGACTTGCGCATTATGCCTCTCAGATTGGGTGAGTGCCCGCATGCTCGTTTCGTGGGTT
186 GATCCCCGACTTGCGCATTATGCCTCTCAGATCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTT
*
21767507 GACTT-AGGCATACAGAGTTCATCCCCA-ATCTAAGCATAC-GAGTTCATTCCCAATCTAAGATC
251 -AATTGAGGCATACAGAGTTCAT-CCCATATCTAAGCATACGGAGTTCATTCCCAATCTAAGATC
* *
21767569 GGACC-GAACCGAGGGTT-G-TG-GCAGCAGGATTGGC
314 GGACCAG-ACCGAGGGTTAGAGGAGCAGCAGGATCGGC
* * * * * *
21767603 AGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCTCATTCTACCTCTCCGATCTACTGAGCAC
1 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGATCTGCTGAGCGC
* * *
21767668 CCGAACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCA
66 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
** **
21767733 GACCGAGGGTTGTGGCAGC--A---GGA-CTGACAGCACAAAGAGGGGGACCGGGTCGATAGCCG
131 GACCGAGGGTTGTGGCAGCATAGCGGGATC-GACAGCACGCAGA-GGGGACCGGGTCGATCCCCG
* ** * * *
21767792 GCTTGCGCATTATGCCTCTTC-GGCCGGCTCAGCGCCCGCACACTCGTTTCGTGGGTTTACTT-A
194 ACTTGCGCATTATGCCTC-TCAGATCGGCTCAGCGCCCGCACGCTCGTTTCATGGG-TTAATTGA
*
21767855 TGCATACAGAGTTCATTCCCA
257 GGCATACAGAGTTCA-TCCCA
21767876 GTCTAAGATC
Statistics
Matches: 525, Mismatches: 78, Indels: 60
0.79 0.12 0.09
Matches are distributed among these distances:
341 2 0.00
342 94 0.18
343 6 0.01
345 1 0.00
354 263 0.50
355 1 0.00
357 1 0.00
358 1 0.00
359 1 0.00
360 1 0.00
365 1 0.00
366 54 0.10
367 93 0.18
368 6 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (350 bp):
AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGATCTGCTGAGCGC
CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
GACCGAGGGTTGTGGCAGCATAGCGGGATCGACAGCACGCAGAGGGGACCGGGTCGATCCCCGAC
TTGCGCATTATGCCTCTCAGATCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTAATTGAGGCA
TACAGAGTTCATCCCATATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGA
GGGTTAGAGGAGCAGCAGGATCGGC
Found at i:21767867 original size:159 final size:156
Alignment explanation
Indices: 21767576--21768042 Score: 438
Period size: 159 Copynumber: 2.9 Consensus size: 156
21767566 ATCGGACCGA
* * * * *
21767576 ACCGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCTC
1 ACCGAGGGTTGTGGCAGCAGGA-TGACAGCACGAAGGGGGGACCGGGTCGAT-CCCGGCTTGCAC
* * * * * * *
21767641 ATTCTACCTCTCCGATCTA-CTGAGCACCCGAACACCCGTTTCATGGGTTGGCTTAGGCATAGGG
64 ATTCTACCTCTTCGGTC-AGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGG
21767705 AGTTCATTCCATGTCTAAGCCCTAG-CCAG
128 AGTTCATTCCATGTCTAAGCCC-AGACCAG
* * *
21767734 ACCGAGGGTTGTGGCAGCAGGACTGACAGCACAAAGAGGGGGACCGGGTCGATAGCCGGCTTGCG
1 ACCGAGGGTTGTGGCAGCAGGA-TGACAGCACGAAG-GGGGGACCGGGTCGAT-CCCGGCTTGCA
* * * * * ** * *
21767799 CATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACACTCGTTTCGTGGGTTTACTTATGCATACAG
63 CATTCTACCTCTTCGGTCAGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGG
** * *
21767864 AGTTCATTCCCA-GTCTAAGATCAGATCGG
128 AGTTCATT-CCATGTCTAAGCCCAGACCAG
* * ** * *
21767893 ACCAAGGGTTGCGATAGTAGGATCGACAGCACGTAGGGGGGGACCGGGTCGATCCTCGGCTTGCA
1 ACCGAGGGTTGTGGCAGCAGGAT-GACAGCACG-AAGGGGGGACCGGGTCGATCC-CGGCTTGCA
* * * * * *
21767958 CTTTCTTCCTC-TCTTGTCAGCTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCCTAGGCAGACG
63 CATTCTACCTCTTC-GGTCAGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACG
21768022 GAGTTCATTCCATGTCTAAGC
127 GAGTTCATTCCATGTCTAAGC
21768043 ATATGGAGTT
Statistics
Matches: 247, Mismatches: 53, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
158 41 0.17
159 201 0.81
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
ACCGAGGGTTGTGGCAGCAGGATGACAGCACGAAGGGGGGACCGGGTCGATCCCGGCTTGCACAT
TCTACCTCTTCGGTCAGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCAGACCAG
Found at i:21768772 original size:26 final size:26
Alignment explanation
Indices: 21768743--21768795 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21768733 GTTGACTTAG
* * *
21768743 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
21768769 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
21768795 G
1 G
21768796 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:21769115 original size:26 final size:26
Alignment explanation
Indices: 21769085--21769137 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21769075 GTTGACTTAG
21769085 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21769111 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21769137 G
1 G
21769138 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21775380 original size:26 final size:26
Alignment explanation
Indices: 21775330--21775382 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21775320 GTTGACTTAG
*
21775330 GCATACGGAGTTCATCCCATGTCTAA
1 GCATACGGAGTTCATCCCATATCTAA
21775356 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCA-TCCCATATCTAA
21775382 G
1 G
21775383 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATATCTAA
Found at i:21775664 original size:159 final size:158
Alignment explanation
Indices: 21775457--21775886 Score: 386
Period size: 159 Copynumber: 2.7 Consensus size: 158
21775447 CTGGCTTGTG
* * * *
21775457 CATTTTGCCTCTTCGATCGGCTGAGTGCCCGCACG-TCTGTTCCATGGGTTGGCTTAGGCATAGG
1 CATTATGCCTCTTCGACCGGCTAAGTGCCCGCACGCTC-GTTTCATGGGTTGGCTTAGGCATAGG
* ** * *
21775521 GAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGTAGAACCGGTAGTACGTA
65 GAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCAGAACCGACAGCACGCA
* *
21775586 GAGGGGGA-CTAGGCCGATCC-TCGGGTTAAA
130 CA-GGGGATC-AGGCCGATCCTTC-GCTTAAA
* * * * * *
21775616 CATTATGCCTCTTCGACCAGCTCAGTGCCCGTACGCTCGTTTCATGGGTTGACTTATGCATAGGA
1 CATTATGCCTCTTCGACCGGCTAAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGG
* ** * * * ** * *
21775681 AGTTTATTCCCA-GTCTAAG-ATCGGATCAGACTGAGGCTTACGGCAGCAGGATCGACAGCACGC
66 AGTTCATT-CCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGCAGAACCGACAGCACGC
* **
21775744 ACAGGGGATCGGGCCGATCCTTCGCTTATG
129 ACAGGGGATCAGGCCGATCCTTCGCTTAAA
* * * * * * * * * *
21775774 CATTATACCT-TTCCAGCTGGTTAAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGCCATACG
1 CATTATGCCTCTTCGA-CCGGCTAAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGG
*
21775838 GAGTTCATTCCATGTCTAAGCCCTAGTCAGACCGAGGGTTGTGGCAGCA
65 GAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCA
21775887 AGACCGGCAG
Statistics
Matches: 209, Mismatches: 54, Indels: 17
0.75 0.19 0.06
Matches are distributed among these distances:
157 7 0.03
158 97 0.46
159 100 0.48
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.26
Consensus pattern (158 bp):
CATTATGCCTCTTCGACCGGCTAAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGG
AGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCAGAACCGACAGCACGCAC
AGGGGATCAGGCCGATCCTTCGCTTAAA
Found at i:21775884 original size:158 final size:156
Alignment explanation
Indices: 21775499--21775886 Score: 336
Period size: 158 Copynumber: 2.4 Consensus size: 156
21775489 ACGTCTGTTC
21775499 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTG
1 CATGGGTTGGCTTA-GCATA-GGAGTTCATTCCATGTCTAAG-CCCAGTCAGACCGAGGGTTGTG
* ** * * * * *
21775564 GCAGTAGAACCGGTAGTACGTAGAGGGGGACTAGGCCGATCCTCGGGTTAAACATTATGCCTCTT
63 GCAGCAGAACCGACAGCACGCACAGGGGGACTAGGCCGATCCTCGGCTTAAACATTATACCTCTT
* * * ** *
21775629 CGACCAGCTCAGTGCCCGTACGCTCGTTT
128 CCACCAGCTAAGCGCCCACACGCTCATTT
* * ** * * * **
21775658 CATGGGTTGACTTATGCATAGGAAGTTTATTCCCA-GTCTAAGATCGGATCAGACTGAGGCTTAC
1 CATGGGTTGGCTTA-GCATAGG-AGTTCATT-CCATGTCTAAGCCCAG-TCAGACCGAGGGTTGT
* * * **
21775722 GGCAGCAGGATCGACAGCACGCACA-GGGGA-TCGGGCCGATCCTTC-GCTTATGCATTATACCT
62 GGCAGCAGAACCGACAGCACGCACAGGGGGACT-AGGCCGATCC-TCGGCTTAAACATTATACCT
** *
21775784 -TTCCAGCTGGTTAAGCGCCCACACGCTCATTT
125 CTTCCA-CCAGCTAAGCGCCCACACGCTCATTT
*
21775816 CGTGGGTTGGCTTAGCCATACGGAGTTCATTCCATGTCTAAGCCCTAGTCAGACCGAGGGTTGTG
1 CATGGGTTGGCTTAG-CATA-GGAGTTCATTCCATGTCTAAGCCC-AGTCAGACCGAGGGTTGTG
21775881 GCAGCA
63 GCAGCA
21775887 AGACCGGCAG
Statistics
Matches: 177, Mismatches: 42, Indels: 21
0.74 0.17 0.09
Matches are distributed among these distances:
157 9 0.05
158 99 0.56
159 66 0.37
160 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (156 bp):
CATGGGTTGGCTTAGCATAGGAGTTCATTCCATGTCTAAGCCCAGTCAGACCGAGGGTTGTGGCA
GCAGAACCGACAGCACGCACAGGGGGACTAGGCCGATCCTCGGCTTAAACATTATACCTCTTCCA
CCAGCTAAGCGCCCACACGCTCATTT
Found at i:21776545 original size:26 final size:26
Alignment explanation
Indices: 21776516--21776568 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21776506 GTTGGCTGAG
21776516 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21776542 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21776568 G
1 G
21776569 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21776742 original size:26 final size:26
Alignment explanation
Indices: 21776712--21776764 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21776702 GTTGACTTAG
21776712 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21776738 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21776764 G
1 G
21776765 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21777084 original size:26 final size:25
Alignment explanation
Indices: 21777055--21777106 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
21777045 GTTGGCTTAG
21777055 GCATAC-GAAGTTCATTCCATGTCTAA
1 GCATACAG-AGTTCATTCCA-GTCTAA
*
21777081 GCATACAGAGTTCATTCTAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
21777106 G
1 G
21777107 AGTTTGAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 7 0.29
26 16 0.67
27 1 0.04
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:21778118 original size:26 final size:26
Alignment explanation
Indices: 21778082--21778134 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21778072 GTTGGCTTAG
*
21778082 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21778108 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21778134 G
1 G
21778135 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21779186 original size:26 final size:26
Alignment explanation
Indices: 21779157--21779209 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21779147 GTTGACTTAG
21779157 GCATACAAAGTTCA-TCCCTAGTCTAA
1 GCATACAAAGTTCATTCCC-AGTCTAA
***
21779183 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
21779209 G
1 G
21779210 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:21779442 original size:696 final size:679
Alignment explanation
Indices: 21778221--21779667 Score: 1709
Period size: 696 Copynumber: 2.1 Consensus size: 679
21778211 CTGGCTTACG
* * * * * *
21778221 CATTCTGCCCCTCCGATCAGCTGAGCACCCGTACGCTCGTTTCGTGG-GTTGGCTTAGGCATACG
1 CATTCTGCCTCTCCGGTCGGCTGAACGCCCGCACGCTCGTTTCGTGGAGTTGGCTTAGGCATACG
** * * * ** *
21778285 GAGTTCA-TTCCATGTCTAAGCCCCATTCGGATCGAGGGTTGTGGCAGCAGGACCGGTAGCGAGA
66 GAGTTCATTTCCACATCTAAGCCCCAGTCGCACCGAGGGTTGTGGCAGCAGGACCGACAGCCAGA
** **
21778349 TCGACAGCACGCAGAGGGGGATCGAACTGATCCTCGACTTGCGTATTATGCCCTTTGGCCAGCCT
131 TCGACAGCACGCAGAGGGGGATCGAACTGATCCTCGACTTGCACATTATGCCCTTCAGCCAGCCT
* * ** **
21778414 CTCCGGCCAGCTAAGCGTCGGTGTGCTAGTTTCGTGGGTTGACTTAGGCATACCGAGTTCATCCC
196 CTCCGGCCAGCTAAGCGCCCGCATGCTAGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATCCC
* * * ** *
21778479 CAGTCTAACCATATGGAGTTCATTCCCATTGTAAGATCGGACCGAGGGTTGCGGTAACAGGATTG
261 CAGTCTAACCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAGGGTTACGACAACAGGATCG
* * * * *
21778544 ACAGCAAGTAGGGGGGACCGGGTCGATCCCTGGCTTGCACATTCTGTCTCTCCTGTTGGCTGACC
326 ACAGCAAGTAGGGGGGACCAGGCCGATCCCTGGCTTACACATTCTGCCTCTCCTGTCGGCTGA-C
* *
21778609 GCTCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
390 GCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * **
21778674 CAGACCGAGGGTTGTGGCAGCTGGACCAGCAGCACGTAGAGGGGGACCGGGTTGATCCCCGGCTT
455 CAGACCGAAGGTTGTGGCAGCGGGACCAGCAGCACACAGAGGGGGACCGGGTTGATCCCCGGCTT
* * * **
21778739 ACGCATTATGCCTCTTCAGTCGACTCAGCGCCCATACGCTCATTTTGTGGGTTGACTTATGCATA
520 ACGCATTATGCCTCTTCAGCCGACTCAGCACCCACACGCTCATTTCATGGGTTGACTTATGCATA
* * *
21778804 CAGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCTGCAGTACGGATCGATAAGC-
585 CAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCAGCAG--CAGATCGA-AAGCA
**
21778868 CACACAGGGGGGACCGGGCCCGATCCCTTACTTGCA
647 CACACA--GGGGACCGGG-CCGATCCCCGACTTGCA
*
21778904 CATGTCTGCCTCTCCGGTCGGCTGAATGCCCAGCCACCGCTCGTATTCGTGGAGTTTGGCTTAGG
1 CAT-TCTGCCTCTCCGGTCGGCTGAACGCCC-G-CA-CGCTCGT-TTCGTGGAG-TTGGCTTAGG
21778969 CATACGGAGTTCATTTCCACATCTAAGCCCCCAGTCGCACCGAGGGTTGTGGCCAGCAGGACCCG
60 CATACGGAGTTCATTTCCACATCTAAG-CCCCAGTCGCACCGAGGGTTGTGG-CAGCAGGA-CCG
** * *
21779034 ACAGCCACGATCGGTAGCACGCAGAGGGGGATCGAGCTG-TCC-CGGCTTGCACATTATGGCCTC
122 ACAGCCA-GATCGACAGCACGCAGAGGGGGATCGAACTGATCCTCGACTTGCACATTAT-GCC-C
* * * * *
21779097 TTCCAGTCGGCCTCTTCC-GCCGGCTGAGCGCCCGCATGCTTGGTTT-GTGGGTTGACTTAGGCA
184 TT-CAGCCAGCCTC-TCCGGCCAGCTAAGCGCCCGCATGC-TAGTTTCGTGGGTTGACTTAGGCA
* *
21779160 TACAAAGTTCATCCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
246 TACAAAGTTCATCCCCAGTCTAACCATATGGAGTTCATTCCCAGTCTAAGATC-G----GACCGA
* *
21779225 GGGTTACGACAACAGGATCGACAGCACGTA-GGGGGACCAGGCCGATTCCC-GGCTTACGCATTC
306 GGGTTACGACAACAGGATCGACAGCAAGTAGGGGGGACCAGGCCGA-TCCCTGGCTTACACATTC
*
21779288 TGCCTCTCC-GATCGGCTGA-GCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTC
370 TGCCTCTCCTG-TCGGCTGACGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTC
* * * ** *
21779351 ATTCCATGTCTAAGCCCGAGTCGGATTGAAGGTTGTGGCAGCGGGACCGGCAGCACACAGA-GGG
434 ATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTGTGGCAGCGGGACCAGCAGCACACAGAGGGG
* * * * *
21779415 GACCGCGG-TGATCCTC-GCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCACCCACACGCTCGT
499 GACCG-GGTTGATCCCCGGCTTACGCATTATGCCTCTTCAGCCGACTCAGCACCCACACGCTCAT
* * * *
21779478 TTCATGGGTTGACTTATGCATACCGAGTTCATTCTCAGTCTAAGATCGGATCGGACCGAGGGTTG
563 TTCATGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTG
* * * *
21779543 CAGCAGCAGATGGACAGCACGCACAGGGGATCGGGCCGATCCCCGACTTGCA
628 CAGCAGCAGATCGAAAGCACACACAGGGGACCGGGCCGATCCCCGACTTGCA
* * * *
21779595 CATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTAG-GTTGGCTTAGGCATACA
1 CATTCTGCCTCTCCGGTCGGCTGAACGCCCGCACGCTCGTTTCGTGGAGTTGGCTTAGGCATACG
*
21779659 AAGTTCATT
66 GAGTTCATT
21779668 CCATGTGTAA
Statistics
Matches: 647, Mismatches: 91, Indels: 51
0.82 0.12 0.06
Matches are distributed among these distances:
683 3 0.00
684 44 0.07
685 2 0.00
686 7 0.01
687 13 0.02
688 9 0.01
689 2 0.00
690 48 0.07
691 29 0.04
692 30 0.05
693 23 0.04
694 24 0.04
695 31 0.05
696 189 0.29
697 24 0.04
698 94 0.15
699 1 0.00
700 39 0.06
701 35 0.05
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (679 bp):
CATTCTGCCTCTCCGGTCGGCTGAACGCCCGCACGCTCGTTTCGTGGAGTTGGCTTAGGCATACG
GAGTTCATTTCCACATCTAAGCCCCAGTCGCACCGAGGGTTGTGGCAGCAGGACCGACAGCCAGA
TCGACAGCACGCAGAGGGGGATCGAACTGATCCTCGACTTGCACATTATGCCCTTCAGCCAGCCT
CTCCGGCCAGCTAAGCGCCCGCATGCTAGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATCCC
CAGTCTAACCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAGGGTTACGACAACAGGATCG
ACAGCAAGTAGGGGGGACCAGGCCGATCCCTGGCTTACACATTCTGCCTCTCCTGTCGGCTGACG
CCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
AGACCGAAGGTTGTGGCAGCGGGACCAGCAGCACACAGAGGGGGACCGGGTTGATCCCCGGCTTA
CGCATTATGCCTCTTCAGCCGACTCAGCACCCACACGCTCATTTCATGGGTTGACTTATGCATAC
AGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCAGCAGCAGATCGAAAGCACACA
CAGGGGACCGGGCCGATCCCCGACTTGCA
Found at i:21779549 original size:157 final size:150
Alignment explanation
Indices: 21779190--21779670 Score: 403
Period size: 157 Copynumber: 3.1 Consensus size: 150
21779180 TAAGCATATG
* * * * * *
21779190 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAACAGGATCGACAGCACGTA
1 GAGTTCATT-CCAGTCTAAGATCGGATCGGACCGAGGGTTGCG-CAGC-GGA-CGGCAGCACGCA
* * *
21779255 G-GGGGACCAGGCCGATTCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCCCGCACAC-C
62 GAGGGGACC-GGGCGA-TCCC-GCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCCC-CACACGC
**
21779318 -CGTTTCGTGGGTTGGCTTAGGCATAGG
123 TCGTTTCGTGGGTTGGCTTAGGCATACA
* * ** * * *
21779345 GAGTTCATTCCATGTCTAAG-CCCGAGTCGGATTGAAGGTTGTGGCAGCGGGACCGGCAGCACAC
1 GAGTTCATTCCA-GTCTAAGATCGGA-TCGGACCGAGGGTTG-CGCAGC-GGA-CGGCAGCACGC
* * * * *
21779409 AGAGGGGACCGCGGTGATCCTCGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCACCCACACGC
61 AGAGGGGACCG-GGCGATCC-CGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC-CCCACACGC
* * * *
21779474 TCGTTTCATGGGTTGACTTATGCATACC
123 TCGTTTCGTGGGTTGGCTTAGGCATACA
* * *
21779502 GAGTTCATTCTCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCAGATGGACAGCACGCAC
1 GAGTTCATTC-CAGTCTAAGATCGGATCGGACCGAGGGTTGC-GCAGCGGACGG-CAGCACGCAG
* * *
21779567 AGGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCT
63 AGGGGACCGGG-CGAT-CCCG-CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC-CCCACACGCT
* *
21779632 CATTTCGTAGGTTGGCTTAGGCATACA
124 CGTTTCGTGGGTTGGCTTAGGCATACA
*
21779659 AAGTTCATTCCA
1 GAGTTCATTCCA
21779671 TGTGTAAGCA
Statistics
Matches: 256, Mismatches: 54, Indels: 31
0.75 0.16 0.09
Matches are distributed among these distances:
154 6 0.02
155 81 0.32
156 40 0.16
157 124 0.48
158 5 0.02
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (150 bp):
GAGTTCATTCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGCAGCGGACGGCAGCACGCAGAGG
GGACCGGGCGATCCCGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCCCCACACGCTCGTTTCG
TGGGTTGGCTTAGGCATACA
Found at i:21780408 original size:25 final size:26
Alignment explanation
Indices: 21780356--21780408 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
21780346 GTTGACTTAG
21780356 GCATACGGAGTTCATCCCCCAGTCTAA
1 GCATACGGAGTTCAT-CCCCAGTCTAA
* *
21780383 GCATATGGAGTTCAT-TCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21780408 G
1 G
21780409 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 10 0.42
27 14 0.58
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21780862 original size:157 final size:158
Alignment explanation
Indices: 21780383--21780887 Score: 428
Period size: 159 Copynumber: 3.2 Consensus size: 158
21780373 CCCAGTCTAA
* * * ** *
21780383 GCATATGGAGTTCATTCCA-GTCTAAGATCGGACCGGA-TCGAGGGTTGCAGAAATAGGATCGCC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGACCAGACT-GAGGGTTGCGGAAGCAGGATCGAC
* * * * *
21780446 GTAGCACGTAAGGGTGGATCAGGTCAATCCCCAGCTTGCGCATTCTCCCCTCTCCGACCGGCTGA
65 --AGCACG-CAGGGGGGATCAGGTCGATCCTCAGCTTGCGCATTCT-GCCTCTCCGACCGGCTG-
* * *
21780511 AGCGCTCACATGC-CTGTTTCGTGGGTTGGCTTAG
125 AGCGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * ** ** ** * * * * *
21780545 ACATA-GGTAGTTCATTCCATGTGTAAGCCCCAACCAGACCAAGGATTGTGGCAGCGGGATTGAC
1 GCATACGG-AGTTCATTCCATGTCTAAGATCGGACCAGACTGAGGGTTGCGGAAGCAGGATCGAC
* * * * * * * * *** * * *
21780609 AGCACACAAAGGGGGACCGGGCCGATCCTCAGCTTACGCATTATGCCTATCCGGTTGGCTCATCA
65 AGCACGC-AGGGGGGATCAGGTCGATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * **
21780674 CCCGTACGCTCGTTTTGTGGGTTAACTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
21780704 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCAGACTGAGGGTTGCGGAAGCAGGATCGAC
* *
21780768 AGCACGCAGGGGGGATCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCT-CGACCGACTGAGCGC
65 AGCACGCAGGGGGGATCAGGTCGATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* *
21780832 CCGCACGCTCATTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
21780861 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
21780888 CATACGGAGT
Statistics
Matches: 256, Mismatches: 79, Indels: 21
0.72 0.22 0.06
Matches are distributed among these distances:
156 3 0.01
157 54 0.21
158 34 0.13
159 73 0.29
160 17 0.07
161 34 0.13
162 15 0.06
163 26 0.10
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCAGACTGAGGGTTGCGGAAGCAGGATCGACA
GCACGCAGGGGGGATCAGGTCGATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Done.