Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 21 of 402
Found at i:4821095 original size:38 final size:38
Alignment explanation
Indices: 4821053--4821148 Score: 102
Period size: 43 Copynumber: 2.4 Consensus size: 38
4821043 AATTTAAAAC
* *
4821053 TTTAATGTAAAAAATTATGTTAATATTTTAAAAGATAA
1 TTTAATATAAAAAATTATATTAATATTTTAAAAGATAA
* *
4821091 TTTAAAATAAAAAATAAAATTATATTAATATTTTAAAAGATAT
1 TTT--AAT--ATAA-AAAATTATATTAATATTTTAAAAGATAA
*
4821134 TTTAAAATAAAAAAT
1 TTTAATATAAAAAAT
4821149 AAATATTCAA
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
38 8 0.17
39 3 0.06
40 3 0.06
41 2 0.04
42 2 0.04
43 29 0.62
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (38 bp):
TTTAATATAAAAAATTATATTAATATTTTAAAAGATAA
Found at i:4821119 original size:43 final size:43
Alignment explanation
Indices: 4821063--4821151 Score: 160
Period size: 43 Copynumber: 2.1 Consensus size: 43
4821053 TTTAATGTAA
*
4821063 AAAATTATGTTAATATTTTAAAAGATAATTTAAAATAAAAAAT
1 AAAATTATATTAATATTTTAAAAGATAATTTAAAATAAAAAAT
*
4821106 AAAATTATATTAATATTTTAAAAGATATTTTAAAATAAAAAAT
1 AAAATTATATTAATATTTTAAAAGATAATTTAAAATAAAAAAT
4821149 AAA
1 AAA
4821152 TATTCAATAC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (43 bp):
AAAATTATATTAATATTTTAAAAGATAATTTAAAATAAAAAAT
Found at i:4821309 original size:22 final size:23
Alignment explanation
Indices: 4821284--4821328 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
4821274 GTAAATTTTT
*
4821284 TTTAATCTTATT-TAAAGGTTAA
1 TTTAATATTATTGTAAAGGTTAA
*
4821306 TTTAATATTATTGTTAAGGTTAA
1 TTTAATATTATTGTAAAGGTTAA
4821329 ACATTTTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.36, C:0.02, G:0.11, T:0.51
Consensus pattern (23 bp):
TTTAATATTATTGTAAAGGTTAA
Found at i:4821394 original size:23 final size:23
Alignment explanation
Indices: 4821368--4821415 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
4821358 AAAAATGTAA
* *
4821368 TTAAAAATTTTTAAACAA-ATTTT
1 TTAAAAAATTTCAAA-AACATTTT
4821391 TTAAAAAATTTCAAAAACATTTT
1 TTAAAAAATTTCAAAAACATTTT
4821414 TT
1 TT
4821416 TACTTCAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 2 0.09
23 20 0.91
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (23 bp):
TTAAAAAATTTCAAAAACATTTT
Found at i:4821880 original size:25 final size:25
Alignment explanation
Indices: 4821829--4821882 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
4821819 TTAATAATTT
* *
4821829 ATATTATATTTTACATAAAAATTAA
1 ATATTATAATTTACATAAAAATAAA
* * *
4821854 ATATTATAATTTATATTAATATAAA
1 ATATTATAATTTACATAAAAATAAA
4821879 ATAT
1 ATAT
4821883 AAAATATATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (25 bp):
ATATTATAATTTACATAAAAATAAA
Found at i:4821887 original size:37 final size:36
Alignment explanation
Indices: 4821817--4821912 Score: 97
Period size: 37 Copynumber: 2.6 Consensus size: 36
4821807 AATTTTAATA
* * *
4821817 ATTTAATAATTTATATTATATTTTACATAAAAATTAAAT
1 ATTT-ATAATTTATATTA-ATATAAAATAAAAA-TAAAT
*
4821856 A-TTATAATTTATATTAATATAAAATATAAAATATAT
1 ATTTATAATTTATATTAATATAAAATA-AAAATAAAT
*
4821892 ATTTTTAATTT-TATTAATATA
1 ATTTATAATTTATATTAATATA
4821913 TATAAAATTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
36 22 0.44
37 25 0.50
38 2 0.04
39 1 0.02
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (36 bp):
ATTTATAATTTATATTAATATAAAATAAAAATAAAT
Found at i:4821964 original size:9 final size:11
Alignment explanation
Indices: 4821939--4821970 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
4821929 AAATTTTAAA
4821939 TCATATTATTT
1 TCATATTATTT
4821950 TCATATT-TTT
1 TCATATTATTT
4821960 T-ATATTATTT
1 TCATATTATTT
4821970 T
1 T
4821971 TGTCTTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
9 5 0.25
10 8 0.40
11 7 0.35
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (11 bp):
TCATATTATTT
Found at i:4822016 original size:13 final size:13
Alignment explanation
Indices: 4821953--4822068 Score: 52
Period size: 13 Copynumber: 9.5 Consensus size: 13
4821943 ATTATTTTCA
4821953 TATTTT-TTATAT
1 TATTTTATTATAT
* *
4821965 TA-TTT-TTGTCT
1 TATTTTATTATAT
* *
4821976 TATATTATTGTAT
1 TATTTTATTATAT
*
4821989 TA-TTAATTA-ATT
1 TATTTTATTATA-T
*
4822001 TATTTTATTACAT
1 TATTTTATTATAT
* * *
4822014 TATTGTGTCATAT
1 TATTTTATTATAT
4822027 T-TTTATATTATAT
1 TATTT-TATTATAT
* *
4822040 TATTATA-T-TCT
1 TATTTTATTATAT
4822051 TATTTTATT-TAT
1 TATTTTATTATAT
4822063 TATTTT
1 TATTTT
4822069 TGTATATAAT
Statistics
Matches: 77, Mismatches: 19, Indels: 16
0.69 0.17 0.14
Matches are distributed among these distances:
11 18 0.23
12 23 0.30
13 33 0.43
14 3 0.04
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.66
Consensus pattern (13 bp):
TATTTTATTATAT
Found at i:4822053 original size:16 final size:15
Alignment explanation
Indices: 4821959--4822063 Score: 51
Period size: 16 Copynumber: 6.9 Consensus size: 15
4821949 TTCATATTTT
*
4821959 TTATATTATTTTTGTC
1 TTATATTATTTAT-TC
*
4821975 TTATATTATTGTATTA
1 TTATATTATT-TATTC
4821991 TTA-ATTAATTTA-T-
1 TTATATT-ATTTATTC
* *
4822004 TT-TATTACATTATTG
1 TTATATTA-TTTATTC
*
4822019 TGTCATATT-TTTA-TA
1 T-T-ATATTATTTATTC
4822034 TTATATTATTATATTC
1 TTATATTATT-TATTC
*
4822050 TTATTTTATTTATT
1 TTATATTATTTATT
4822064 ATTTTTGTAT
Statistics
Matches: 70, Mismatches: 7, Indels: 25
0.69 0.07 0.25
Matches are distributed among these distances:
12 1 0.01
13 13 0.19
14 5 0.07
15 14 0.20
16 31 0.44
17 2 0.03
18 4 0.06
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.65
Consensus pattern (15 bp):
TTATATTATTTATTC
Found at i:4822069 original size:13 final size:14
Alignment explanation
Indices: 4822024--4822069 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 14
4822014 TATTGTGTCA
4822024 TATTTTTATATTA-
1 TATTTTTATATTAT
* *
4822037 TATTATTATATTCT
1 TATTTTTATATTAT
4822051 TA-TTTTAT-TTAT
1 TATTTTTATATTAT
4822063 TATTTTT
1 TATTTTT
4822070 GTATATAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
12 5 0.19
13 20 0.74
14 2 0.07
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (14 bp):
TATTTTTATATTAT
Found at i:4822147 original size:28 final size:27
Alignment explanation
Indices: 4822072--4822151 Score: 74
Period size: 28 Copynumber: 3.0 Consensus size: 27
4822062 TTATTTTTGT
** *
4822072 ATATAATATGAATTTT-AAAATTTTTA
1 ATATAATATTTATTTTAAAAATTATTA
** *
4822098 ATATAATATTTAAATTATAAATATATTA
1 ATATAATATTTATTTTAAAAAT-TATTA
4822126 AT-TAATATATTATTTTAAAAATTATT
1 ATATAATAT-TTATTTTAAAAATTATT
4822152 TATTTGTTAT
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
26 12 0.29
27 14 0.33
28 16 0.38
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (27 bp):
ATATAATATTTATTTTAAAAATTATTA
Found at i:4822295 original size:19 final size:18
Alignment explanation
Indices: 4822253--4822295 Score: 50
Period size: 20 Copynumber: 2.3 Consensus size: 18
4822243 ATTAAAAAAT
*
4822253 TTTAAAATTTAAATATTA
1 TTTAAAATTTAAATATAA
*
4822271 TATTAAATATTTAATTATAA
1 T-TTAAA-ATTTAAATATAA
4822291 TTTAA
1 TTTAA
4822296 TAACCATCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 1 0.05
19 9 0.43
20 11 0.52
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTAAAATTTAAATATAA
Found at i:4826434 original size:17 final size:17
Alignment explanation
Indices: 4826412--4826506 Score: 67
Period size: 15 Copynumber: 5.6 Consensus size: 17
4826402 ACTATTAAAA
4826412 TATTAAAAATTATTTAT
1 TATTAAAAATTATTTAT
*
4826429 TATT-AAAATTA-TTAA
1 TATTAAAAATTATTTAT
*
4826444 TATTCAAAAATAATTTTAT
1 TATT-AAAAATTA-TTTAT
* *
4826463 T-TTAATAA-TATTTAA
1 TATTAAAAATTATTTAT
4826478 TATT-AAAA-TATTTTAT
1 TATTAAAAATTA-TTTAT
4826494 TAATATAAAAATT
1 T-AT-TAAAAATT
4826507 TAAAACAAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 17
0.71 0.09 0.20
Matches are distributed among these distances:
15 17 0.28
16 15 0.25
17 16 0.27
18 3 0.05
19 8 0.13
20 1 0.02
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (17 bp):
TATTAAAAATTATTTAT
Found at i:4826438 original size:16 final size:16
Alignment explanation
Indices: 4826412--4826495 Score: 59
Period size: 16 Copynumber: 5.1 Consensus size: 16
4826402 ACTATTAAAA
4826412 TATTAAAAATTATTTAT
1 TATT-AAAATTATTTAT
*
4826429 TATTAAAATTA-TTAA
1 TATTAAAATTATTTAT
*
4826444 TATTCAAAAATAATTTTAT
1 TATT--AAAATTA-TTTAT
*
4826463 T-TTAATAA-TATTTAA
1 TATTAA-AATTATTTAT
4826478 TATTAAAA-TATTTTAT
1 TATTAAAATTA-TTTAT
4826494 TA
1 TA
4826496 ATATAAAAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
15 16 0.30
16 20 0.37
17 12 0.22
18 2 0.04
19 4 0.07
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (16 bp):
TATTAAAATTATTTAT
Found at i:4826442 original size:34 final size:32
Alignment explanation
Indices: 4826410--4826494 Score: 97
Period size: 34 Copynumber: 2.7 Consensus size: 32
4826400 TAACTATTAA
*
4826410 AATATTAAAAATTA-TTTATTATTAA-AATTATT
1 AATATTAAAAATAATTTTATT-TTAATAA-TATT
4826442 AATATTCAAAAATAATTTTATTTTAATAATATTT
1 AATATT-AAAAATAATTTTATTTTAATAATA-TT
4826476 AATATT-AAAAT-ATTTTATT
1 AATATTAAAAATAATTTTATT
4826495 AATATAAAAA
Statistics
Matches: 48, Mismatches: 1, Indels: 9
0.83 0.02 0.16
Matches are distributed among these distances:
31 8 0.17
32 11 0.23
33 13 0.27
34 16 0.33
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (32 bp):
AATATTAAAAATAATTTTATTTTAATAATATT
Found at i:4826557 original size:11 final size:11
Alignment explanation
Indices: 4826541--4826670 Score: 64
Period size: 11 Copynumber: 12.5 Consensus size: 11
4826531 TTATATTATT
4826541 TATTAATATAA
1 TATTAATATAA
4826552 TATT-A-AT-A
1 TATTAATATAA
*
4826560 TATTATTATAA
1 TATTAATATAA
* *
4826571 TATTTAT-TTA
1 TATTAATATAA
*
4826581 TAATAATAT--
1 TATTAATATAA
*
4826590 TATTAATATAT
1 TATTAATATAA
* *
4826601 TATTTAT-TCA
1 TATTAATATAA
*
4826611 TA-TAATAATATT
1 TATTAAT-ATA-A
*
4826623 TATTAATATAT
1 TATTAATATAA
4826634 TA-TAATATAA
1 TATTAATATAA
* *
4826644 TATT-ATTTATT
1 TATTAATATA-A
4826655 TATTAATATAA
1 TATTAATATAA
4826666 TATTA
1 TATTA
4826671 TTTATAAGTA
Statistics
Matches: 88, Mismatches: 18, Indels: 26
0.67 0.14 0.20
Matches are distributed among these distances:
8 5 0.06
9 13 0.15
10 26 0.30
11 31 0.35
12 9 0.10
13 4 0.05
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.54
Consensus pattern (11 bp):
TATTAATATAA
Found at i:4826564 original size:8 final size:8
Alignment explanation
Indices: 4826551--4826664 Score: 62
Period size: 8 Copynumber: 14.4 Consensus size: 8
4826541 TATTAATATA
4826551 ATATTAAT
1 ATATTAAT
4826559 ATATT-AT
1 ATATTAAT
4826566 -TA-TAAT
1 ATATTAAT
*
4826572 AT-TTATTT
1 ATATTA-AT
*
4826580 ATAATAAT
1 ATATTAAT
4826588 ATTATTAAT
1 A-TATTAAT
4826597 ATATT-AT
1 ATATTAAT
* *
4826604 TTATTCAT
1 ATATTAAT
*
4826612 ATAATAAT
1 ATATTAAT
4826620 ATTTATTAAT
1 A--TATTAAT
4826630 ATATT-AT
1 ATATTAAT
4826637 A-ATATAAT
1 ATAT-TAAT
*
4826645 ATTATTTAT
1 A-TATTAAT
*
4826654 TTATTAAT
1 ATATTAAT
4826662 ATA
1 ATA
4826665 ATATTATTTA
Statistics
Matches: 80, Mismatches: 13, Indels: 26
0.67 0.11 0.22
Matches are distributed among these distances:
5 1 0.01
6 6 0.08
7 15 0.19
8 37 0.46
9 12 0.15
10 9 0.11
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.54
Consensus pattern (8 bp):
ATATTAAT
Found at i:4826564 original size:38 final size:37
Alignment explanation
Indices: 4826522--4826670 Score: 130
Period size: 38 Copynumber: 3.9 Consensus size: 37
4826512 CAAAACTATT
*
4826522 TATTATTCGTTATATTATTTATTAATATAATATTAATA
1 TATTATT-ATTATATTATTTATTAATATAATATTAATA
* *
4826560 TATTATTATAATATTTATTTA-TAATAATATTATTAATA
1 TATTATTATTATA-TTATTTATTAAT-ATAATATTAATA
*
4826598 TATTATTTATTCATATAATAATATTTATTAATATATTA-TAATA
1 TATTA-TTA-T--TAT-AT--TATTTATTAATATAATATTAATA
4826641 TA--A-TATTAT-TTATTTATTAATATAATATTA
1 TATTATTATTATATTATTTATTAATATAATATTA
4826671 TTTATAAGTA
Statistics
Matches: 95, Mismatches: 5, Indels: 27
0.75 0.04 0.21
Matches are distributed among these distances:
32 16 0.17
33 2 0.02
34 1 0.01
36 3 0.03
37 8 0.08
38 31 0.33
39 5 0.05
40 1 0.01
41 1 0.01
42 3 0.03
43 8 0.08
44 12 0.13
45 4 0.04
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (37 bp):
TATTATTATTATATTATTTATTAATATAATATTAATA
Found at i:4844331 original size:18 final size:18
Alignment explanation
Indices: 4844304--4844338 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
4844294 ATTGAATCAA
4844304 ATTAAATTATATATTTTT
1 ATTAAATTATATATTTTT
*
4844322 ATTAATTTATATATTTT
1 ATTAAATTATATATTTT
4844339 GTAAAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
ATTAAATTATATATTTTT
Found at i:4844346 original size:18 final size:18
Alignment explanation
Indices: 4844306--4844347 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
4844296 TGAATCAAAT
4844306 TAAA-TTATATATTTTTA
1 TAAATTTATATATTTTTA
*
4844323 TTAATTTATATATTTTGTA
1 TAAATTTATATATTTT-TA
4844342 -AAATTT
1 TAAATTT
4844348 TGTAAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 3 0.14
18 16 0.76
19 2 0.10
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
TAAATTTATATATTTTTA
Found at i:4847174 original size:21 final size:22
Alignment explanation
Indices: 4847148--4847190 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
4847138 TGGTCTGAAT
4847148 AGTAGT-AGTAATTTTTAAAAC
1 AGTAGTGAGTAATTTTTAAAAC
* *
4847169 AGTAGTGATTAATTTTTTAAAC
1 AGTAGTGAGTAATTTTTAAAAC
4847191 CCAAATTAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.42
Consensus pattern (22 bp):
AGTAGTGAGTAATTTTTAAAAC
Found at i:4850039 original size:23 final size:23
Alignment explanation
Indices: 4850013--4850068 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
4850003 GATTTAATGG
*
4850013 TTTTTAAATTTAATTTTT-ATATA
1 TTTTT-AATATAATTTTTAATATA
*
4850036 TTTTTAATATGATTTTTAATATA
1 TTTTTAATATAATTTTTAATATA
4850059 -TTTTAATATA
1 TTTTTAATATA
4850069 TTTAGATATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
22 19 0.66
23 10 0.34
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (23 bp):
TTTTTAATATAATTTTTAATATA
Found at i:4850052 original size:12 final size:11
Alignment explanation
Indices: 4850025--4850071 Score: 71
Period size: 10 Copynumber: 4.4 Consensus size: 11
4850015 TTTAAATTTA
4850025 ATTTTT-ATAT
1 ATTTTTAATAT
4850035 ATTTTTAATAT
1 ATTTTTAATAT
4850046 GATTTTTAATAT
1 -ATTTTTAATAT
4850058 A-TTTTAATAT
1 ATTTTTAATAT
4850068 ATTT
1 ATTT
4850072 AGATATAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
10 16 0.47
11 7 0.21
12 11 0.32
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (11 bp):
ATTTTTAATAT
Found at i:4855640 original size:29 final size:30
Alignment explanation
Indices: 4855593--4855651 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 30
4855583 GGTATATTGA
*
4855593 ATATAAAATATTTTATTTTTATTA-AATTT
1 ATATAAAATATTTTATTTTTAATATAATTT
4855622 ATATAAAAT-TTTTATTTTTTAATATAATTT
1 ATATAAAATATTTTA-TTTTTAATATAATTT
4855652 TCGTATCATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 5 0.19
29 17 0.63
30 5 0.19
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (30 bp):
ATATAAAATATTTTATTTTTAATATAATTT
Found at i:4867401 original size:13 final size:13
Alignment explanation
Indices: 4867383--4867407 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4867373 ATGTCAAATA
4867383 AGTGATGAGTCAT
1 AGTGATGAGTCAT
4867396 AGTGATGAGTCA
1 AGTGATGAGTCA
4867408 CCTTACTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.28
Consensus pattern (13 bp):
AGTGATGAGTCAT
Found at i:4868421 original size:284 final size:284
Alignment explanation
Indices: 4867874--4868444 Score: 797
Period size: 284 Copynumber: 2.0 Consensus size: 284
4867864 TATACTAATA
* * * *
4867874 GTAAGTTACTATAGTGAAAGACATATCTCCATAAAAGTCAAGCCTCCAGTTCAACGTTAAGCCAA
1 GTAAGTTACTATACTAAAAGACATATCTCCATAAAAATCAAGCCCCCAGTTCAACGTTAAGCCAA
* * * * * ** *
4867939 GAAGGCGCCAAAGTCTTGAACACCAGCTAGAATCTTTGGTTATATGTTTGATCTATGGAATACTT
66 AAAGGCACCAAAGTCTTGAACACCAGCTAGAATCCTTAGTTATATGTCTGATCTATAAAACACTT
*
4868004 ATAGTTGGTATTATCTTGACAACTTGATCGATCTACACGCTGTTAAAATAATATCATATAGTATT
131 ATAGTTGGTATTATCTTGACAACTTGATCGATCTACACGCTGTTAAAATAATACCATATAGTATT
* * * * *
4868069 GTTAGGACTCTACTACCCGAAGAGTCCGAAATTGAAACTGTCAGTTGTCAGAGCCTTGGTCGTAC
196 GTCAGGACTCTACTACCCGAAGAGCCCGAAACTGAAACCGTCAGTTGTCAGAGCCTTGGCCGTAC
*
4868134 TACCTG-CGACTGTGTATAGAAATG
261 TACCTGTCG-CTATGTATAGAAATG
* * * *
4868158 GTAAGTTACTATACTAAAAGATATATCTCCATAAAAATCAGGCCCCCAGTTCATCTTTAAGCCAA
1 GTAAGTTACTATACTAAAAGACATATCTCCATAAAAATCAAGCCCCCAGTTCAACGTTAAGCCAA
* * * *
4868223 AAAGGCACTAGAGTCTTGAATACCAGTTAGAATACCTTAGTTATATGTCTGATCTATAAAACACT
66 AAAGGCACCAAAGTCTTGAACACCAGCTAGAAT-CCTTAGTTATATGTCTGATCTATAAAACACT
* * *
4868288 TAT-GATTGGTATTATCTTGACAAGTTGATCGATCTACACGCTGTTGAAATAGTACCATATAGTA
130 TATAG-TTGGTATTATCTTGACAACTTGATCGATCTACACGCTGTTAAAATAATACCATATAGTA
* * *
4868352 TTGTCAGGACTCTACTACTCGGAG-GCCCGAAACTGAAGCCGTCAGTTGTCAGAGCCTTGGCCGT
194 TTGTCAGGACTCTACTACCCGAAGAGCCCGAAACTGAAACCGTCAGTTGTCAGAGCCTTGGCCGT
4868416 ACTACCTGTCGCTATGTATAGAAATG
259 ACTACCTGTCGCTATGTATAGAAATG
4868442 GTA
1 GTA
4868445 TCAGAGCCTT
Statistics
Matches: 251, Mismatches: 33, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
284 145 0.58
285 106 0.42
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (284 bp):
GTAAGTTACTATACTAAAAGACATATCTCCATAAAAATCAAGCCCCCAGTTCAACGTTAAGCCAA
AAAGGCACCAAAGTCTTGAACACCAGCTAGAATCCTTAGTTATATGTCTGATCTATAAAACACTT
ATAGTTGGTATTATCTTGACAACTTGATCGATCTACACGCTGTTAAAATAATACCATATAGTATT
GTCAGGACTCTACTACCCGAAGAGCCCGAAACTGAAACCGTCAGTTGTCAGAGCCTTGGCCGTAC
TACCTGTCGCTATGTATAGAAATG
Found at i:4872597 original size:13 final size:13
Alignment explanation
Indices: 4872579--4872603 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4872569 TAAAGTAAAG
4872579 TGACTCATCACTA
1 TGACTCATCACTA
4872592 TGACTCATCACT
1 TGACTCATCACT
4872604 TATTTGACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.32, G:0.08, T:0.32
Consensus pattern (13 bp):
TGACTCATCACTA
Found at i:4872645 original size:18 final size:18
Alignment explanation
Indices: 4872612--4872646 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
4872602 CTTATTTGAC
**
4872612 ATAAAGTAAATGTGACTA
1 ATAAAGTAAACATGACTA
4872630 ATAAAGTAAACATGACT
1 ATAAAGTAAACATGACT
4872647 TGACTTAGAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.09, G:0.14, T:0.26
Consensus pattern (18 bp):
ATAAAGTAAACATGACTA
Found at i:4877450 original size:52 final size:52
Alignment explanation
Indices: 4877367--4877476 Score: 175
Period size: 52 Copynumber: 2.1 Consensus size: 52
4877357 TTTTCTGAAA
* * *
4877367 TAAGCAAAATCATTAACTTTTGGAAGATTGAAAGTTCACATCTCGCCAGGTT
1 TAAGAAAAATCATTAACTGTTGGAAGATTGAAAGTTCACATCTAGCCAGGTT
* *
4877419 TAAGAAAAATCATTAACTGTTGGAAGATTGAAAGTTCACTTGTAGCCAGGTT
1 TAAGAAAAATCATTAACTGTTGGAAGATTGAAAGTTCACATCTAGCCAGGTT
4877471 TAAGAA
1 TAAGAA
4877477 TGGCAAAAGA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (52 bp):
TAAGAAAAATCATTAACTGTTGGAAGATTGAAAGTTCACATCTAGCCAGGTT
Found at i:4877730 original size:19 final size:18
Alignment explanation
Indices: 4877682--4877748 Score: 64
Period size: 19 Copynumber: 3.6 Consensus size: 18
4877672 TTGAGTAAAA
*
4877682 TAAATATTTAAAAA-TTT
1 TAAATTTTTAAAAATTTT
*
4877699 AAAATTTAATTAATAAATTTT
1 TAAATTT--TTAA-AAATTTT
*
4877720 TAAATTTTTAAATAATTAT
1 TAAATTTTTAAA-AATTTT
4877739 TAAATTTTTA
1 TAAATTTTTA
4877749 TTTAAGAATA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
17 5 0.12
18 1 0.02
19 23 0.56
20 3 0.07
21 9 0.22
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TAAATTTTTAAAAATTTT
Found at i:4877730 original size:30 final size:27
Alignment explanation
Indices: 4877680--4877748 Score: 75
Period size: 27 Copynumber: 2.4 Consensus size: 27
4877670 AATTGAGTAA
*
4877680 AATAAATATTTAAAAATTTAAAATTTAATT
1 AATAAATTTTTAAAAATTT-AAA--TAATT
**
4877710 AATAAATTTTTAAATTTTTAAATAATT
1 AATAAATTTTTAAAAATTTAAATAATT
*
4877737 ATTAAATTTTTA
1 AATAAATTTTTA
4877749 TTTAAGAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 16 0.46
29 3 0.09
30 16 0.46
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (27 bp):
AATAAATTTTTAAAAATTTAAATAATT
Found at i:4879744 original size:31 final size:31
Alignment explanation
Indices: 4879709--4879772 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
4879699 AGATAAACTG
4879709 TATTTAGAATTGAAAATCAAGCATGCATGGT
1 TATTTAGAATTGAAAATCAAGCATGCATGGT
4879740 TATTTAGAATTGAAAATCAAGCATGCATGGT
1 TATTTAGAATTGAAAATCAAGCATGCATGGT
4879771 TA
1 TA
4879773 AAATGAGACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (31 bp):
TATTTAGAATTGAAAATCAAGCATGCATGGT
Found at i:4882427 original size:21 final size:22
Alignment explanation
Indices: 4882388--4882430 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
4882378 TTAAATGTTA
* *
4882388 TTATATATGAATTTTTTTAATT
1 TTATATATAAATTTATTTAATT
4882410 TTATAT-TAAATTTATTTAATT
1 TTATATATAAATTTATTTAATT
4882431 ATATTTTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (22 bp):
TTATATATAAATTTATTTAATT
Found at i:4882474 original size:20 final size:20
Alignment explanation
Indices: 4882413--4882482 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 20
4882403 TTTAATTTTA
*
4882413 TATTAAATTTATTTAATTATAT
1 TATT-AATTTATTTGATTAT-T
* *
4882435 T-TTGATTT-GTTGATTAATT
1 TATTAATTTATTTGATT-ATT
4882454 TATTAATTTATTTGATTATT
1 TATTAATTTATTTGATTATT
*
4882474 TAATAATTT
1 TATTAATTT
4882483 TTTAATATAT
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
19 7 0.18
20 23 0.59
21 8 0.21
22 1 0.03
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (20 bp):
TATTAATTTATTTGATTATT
Found at i:4882480 original size:28 final size:31
Alignment explanation
Indices: 4882418--4882493 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 31
4882408 TTTTATATTA
*
4882418 AATTTATTTAATTATATTTTGATTTGTTGATT
1 AATTTA-TTAATTATATTTTGATTTGTTGAAT
4882450 AATTTATTAATT-TA-TTTGATTAT-TT-AAT
1 AATTTATTAATTATATTTTGATT-TGTTGAAT
*
4882478 AATTTTTTAATATATA
1 AATTTATTAAT-TATA
4882494 AACATAACAT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
28 12 0.31
29 10 0.26
30 5 0.13
31 6 0.15
32 6 0.15
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (31 bp):
AATTTATTAATTATATTTTGATTTGTTGAAT
Found at i:4885552 original size:103 final size:103
Alignment explanation
Indices: 4885350--4885558 Score: 330
Period size: 103 Copynumber: 2.0 Consensus size: 103
4885340 AAAACTACAT
*
4885350 CTTCGATATTTAATGGCGGGCCGAGTTGTTCAAGTACGGGGTTTAATGATTGATATTCCTGCACG
1 CTTCGATATTTAATGGCGGGCCGAGTTGTTCAAGTACGGGGTTAAATGATTGATATTCCTGCACG
* *
4885415 TCGAGAGAGATGATGTGATTGCAAAAAAATGCAGGGAA
66 TCGAGAGAGATAATGTGATTGCAAAAAAATGCAGGAAA
* * * *
4885453 CTTCGATATTTCATGGCGGGCCGAGTTGTTCAGGTAATGGGGTTAAATGGTTGATATTCCTGCAC
1 CTTCGATATTTAATGGCGGGCCGAGTTGTTCAAGT-ACGGGGTTAAATGATTGATATTCCTGCAC
*
4885518 GTCGAGAGAGATAATGTGATTGC-AACAAATGCAGGAAA
65 GTCGAGAGAGATAATGTGATTGCAAAAAAATGCAGGAAA
4885556 CTT
1 CTT
4885559 GGGCTTTTGC
Statistics
Matches: 97, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
103 49 0.51
104 48 0.49
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (103 bp):
CTTCGATATTTAATGGCGGGCCGAGTTGTTCAAGTACGGGGTTAAATGATTGATATTCCTGCACG
TCGAGAGAGATAATGTGATTGCAAAAAAATGCAGGAAA
Found at i:4895775 original size:17 final size:19
Alignment explanation
Indices: 4895741--4895775 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
4895731 GATCTTTTCT
4895741 ATCAAGAAAAGTATGAAAG
1 ATCAAGAAAAGTATGAAAG
4895760 ATCAA-AAAAGTA-GAAA
1 ATCAAGAAAAGTATGAAA
4895776 ACATCATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 7 0.44
19 5 0.31
ACGTcount: A:0.63, C:0.06, G:0.17, T:0.14
Consensus pattern (19 bp):
ATCAAGAAAAGTATGAAAG
Found at i:4895781 original size:18 final size:19
Alignment explanation
Indices: 4895741--4895781 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
4895731 GATCTTTTCT
*
4895741 ATCAAGAAAAGTATGAAAG
1 ATCAAGAAAAGTATGAAAC
4895760 ATCAA-AAAAGTA-GAAAAC
1 ATCAAGAAAAGTATG-AAAC
4895778 ATCA
1 ATCA
4895782 TTTTCATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 1 0.05
18 14 0.70
19 5 0.25
ACGTcount: A:0.61, C:0.10, G:0.15, T:0.15
Consensus pattern (19 bp):
ATCAAGAAAAGTATGAAAC
Found at i:4907227 original size:2 final size:2
Alignment explanation
Indices: 4907220--4907247 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
4907210 ATGCAAAGGA
4907220 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4907248 GTATGTATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4907252 original size:4 final size:4
Alignment explanation
Indices: 4907245--4907288 Score: 74
Period size: 4 Copynumber: 11.5 Consensus size: 4
4907235 TATATATATA
4907245 TATG TATG TATG TATG TATG TATG TA-- TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TA
4907289 CACATACATA
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.05
4 36 0.95
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:4907297 original size:4 final size:4
Alignment explanation
Indices: 4907290--4907314 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
4907280 ATGTATGTAC
4907290 ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT A
4907315 TGCGCGCACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:4910139 original size:68 final size:68
Alignment explanation
Indices: 4910030--4910166 Score: 238
Period size: 68 Copynumber: 2.0 Consensus size: 68
4910020 CATTATCATC
* *
4910030 ATCTGTGTCAGTTACACTTCCTTCTGATTAAGAATTTGAACAAAAAGAAAAGAAAGCAAAATCAA
1 ATCTGTGTCAGTTACACTTCCTTCTGACTAAGAATTTGAACAAAAAGAAAAGAAAGAAAAATCAA
4910095 TGA
66 TGA
* *
4910098 ATCTGTGTCAGTTACACTTCCTTCTGACTAAGAATTTGAACAGAGAGAAAAGAAAGAAAAATCAA
1 ATCTGTGTCAGTTACACTTCCTTCTGACTAAGAATTTGAACAAAAAGAAAAGAAAGAAAAATCAA
4910163 TGA
66 TGA
4910166 A
1 A
4910167 AGATAGCAAT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 65 1.00
ACGTcount: A:0.44, C:0.15, G:0.16, T:0.26
Consensus pattern (68 bp):
ATCTGTGTCAGTTACACTTCCTTCTGACTAAGAATTTGAACAAAAAGAAAAGAAAGAAAAATCAA
TGA
Found at i:4916429 original size:28 final size:28
Alignment explanation
Indices: 4916388--4916442 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
4916378 TCTTGTGTAA
*
4916388 GCAAAAATGAAAGAAGCCTATTATGTGG
1 GCAAAAATGAAAGAAACCTATTATGTGG
*
4916416 GCAAAAATGGAAGAAACCTATTATGTG
1 GCAAAAATGAAAGAAACCTATTATGTG
4916443 ATAGATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.44, C:0.11, G:0.24, T:0.22
Consensus pattern (28 bp):
GCAAAAATGAAAGAAACCTATTATGTGG
Found at i:4916677 original size:108 final size:108
Alignment explanation
Indices: 4916483--4916680 Score: 242
Period size: 108 Copynumber: 1.8 Consensus size: 108
4916473 CCTAGCTATA
* * * * *
4916483 ATACTATGTTAAGCATCTAATTTAAAATTAATTGACAGTAAGTAAGAGAGCTCAAATTGAATATA
1 ATACTATGTTAAACATCTAACTTAAAACTAATTGACAGTAAATAAGAGAGCTCAAATTAAATATA
* *
4916548 AGACTACAAGAAATTATATATTTATAAGAAAATCTTGACTCTG
66 AAACTACAAGAAATTAGATATTTATAAGAAAATCTTGACTCTG
*
4916591 ATACTATGTTAAACAT-TCAACTTAAAACTAATTG-CTAGTAAATGAA-AGAG-TCTAACTTAAA
1 ATACTATGTTAAACATCT-AACTTAAAACTAATTGAC-AGTAAAT-AAGAGAGCTC-AAATTAAA
* *
4916652 TATAAAATTACAAGAAGTTAGATATTTAT
62 TATAAAACTACAAGAAATTAGATATTTAT
4916681 TATATATGAG
Statistics
Matches: 76, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
107 4 0.05
108 70 0.92
109 2 0.03
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (108 bp):
ATACTATGTTAAACATCTAACTTAAAACTAATTGACAGTAAATAAGAGAGCTCAAATTAAATATA
AAACTACAAGAAATTAGATATTTATAAGAAAATCTTGACTCTG
Found at i:4918734 original size:51 final size:51
Alignment explanation
Indices: 4918668--4918767 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
4918658 ATAAAAAGAT
*
4918668 TTACAAAAAAAAATTTTAAGAAAAAAGAGATT-TTAAAAGGTAAGTTTAAC
1 TTACAAAAAAAAATTTTAAGAAAAAAGAGATTCTTAAAAGGCAAGTTTAAC
* * *
4918718 TTACAGAAAAAGAATTTTAAGAGAAAAGAGATTCTTAATAGGCAAGTTTA
1 TTACA-AAAAAAAATTTTAAGAAAAAAGAGATTCTTAAAAGGCAAGTTTA
4918768 TATGGTTATA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
50 5 0.11
51 25 0.57
52 14 0.32
ACGTcount: A:0.52, C:0.05, G:0.15, T:0.28
Consensus pattern (51 bp):
TTACAAAAAAAAATTTTAAGAAAAAAGAGATTCTTAAAAGGCAAGTTTAAC
Found at i:4919724 original size:52 final size:52
Alignment explanation
Indices: 4919660--4919762 Score: 161
Period size: 52 Copynumber: 2.0 Consensus size: 52
4919650 GGACAAAAAG
* * *
4919660 ACTTGCAGAAGAAGAATTCTAAGAGAAAATAGATTCTTAAAAGGTAAGTTTA
1 ACTTGCAAAAGAAGAATTCTAAAAGAAAAAAGATTCTTAAAAGGTAAGTTTA
* *
4919712 ACTTGCAAAAGAAGAATTTTAAAAGAAAAAAGATTCTTAATAGGTAAGTTT
1 ACTTGCAAAAGAAGAATTCTAAAAGAAAAAAGATTCTTAAAAGGTAAGTTT
4919763 GTATGGTTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.48, C:0.07, G:0.17, T:0.28
Consensus pattern (52 bp):
ACTTGCAAAAGAAGAATTCTAAAAGAAAAAAGATTCTTAAAAGGTAAGTTTA
Found at i:4921716 original size:6 final size:6
Alignment explanation
Indices: 4921707--4921789 Score: 62
Period size: 6 Copynumber: 13.5 Consensus size: 6
4921697 ATTTTTTATT
*
4921707 TTTTTA TTTTTA TTTTT- TTTTT- TGTTTA TTATTTA TTTTTA TTATTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TT-TTTA TTTTTA TT-TTTA
* * * * *
4921755 CTATTATA TTATTA TTTATA TTATTA TTATTA TTT
1 -T-TTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
4921790 ATTGATTTTA
Statistics
Matches: 62, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
5 9 0.15
6 37 0.60
7 11 0.18
8 4 0.06
9 1 0.02
ACGTcount: A:0.23, C:0.01, G:0.01, T:0.75
Consensus pattern (6 bp):
TTTTTA
Found at i:4921734 original size:22 final size:22
Alignment explanation
Indices: 4921697--4921792 Score: 88
Period size: 22 Copynumber: 4.1 Consensus size: 22
4921687 AGATGGACTC
4921697 ATTTTTTATTTTTTTATT-TTT
1 ATTTTTTATTTTTTTATTATTT
*
4921718 ATTTTTTTTTTTGTTTATTATTT
1 ATTTTTTATTTT-TTTATTATTT
*
4921741 A-TTTTTATTATTTACTATTATATT
1 ATTTTTTATT-TTT-TTATTAT-TT
*
4921765 ATTATTTATATTATTATTATTATTT
1 ATT-TTT-TATT-TTTTTATTATTT
4921790 ATT
1 ATT
4921793 GATTTTATCT
Statistics
Matches: 62, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
21 11 0.18
22 14 0.23
23 12 0.19
24 3 0.05
25 6 0.10
26 9 0.15
27 7 0.11
ACGTcount: A:0.23, C:0.01, G:0.01, T:0.75
Consensus pattern (22 bp):
ATTTTTTATTTTTTTATTATTT
Found at i:4921738 original size:3 final size:3
Alignment explanation
Indices: 4921732--4921788 Score: 55
Period size: 3 Copynumber: 18.7 Consensus size: 3
4921722 TTTTTTTTGT
* *
4921732 TTA TTA TTTA TTT TTA TTA TTTA CTA TTA -TA TTA TTA TT- TATA TTA
1 TTA TTA -TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA T-TA TTA
4921778 TTA TTA TTA TT
1 TTA TTA TTA TT
4921789 TATTGATTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
2 3 0.07
3 35 0.78
4 7 0.16
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:4921768 original size:18 final size:18
Alignment explanation
Indices: 4921735--4921791 Score: 82
Period size: 18 Copynumber: 3.2 Consensus size: 18
4921725 TTTTTGTTTA
*
4921735 TTAT-TTATTTTTATTAT
1 TTATATTATTATTATTAT
4921752 TTACTATTA-TATTATTAT
1 TTA-TATTATTATTATTAT
4921770 TTATATTATTATTATTAT
1 TTATATTATTATTATTAT
4921788 TTAT
1 TTAT
4921792 TGATTTTATC
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
17 8 0.22
18 25 0.69
19 3 0.08
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (18 bp):
TTATATTATTATTATTAT
Found at i:4921773 original size:12 final size:11
Alignment explanation
Indices: 4921697--4921797 Score: 66
Period size: 11 Copynumber: 9.0 Consensus size: 11
4921687 AGATGGACTC
*
4921697 ATTTTTTATTT
1 ATTTATTATTT
*
4921708 TTTTATT-TTT
1 ATTTATTATTT
* *
4921718 ATTTTTTTTTTT
1 A-TTTATTATTT
*
4921730 GTTTATTATTT
1 ATTTATTATTT
4921741 ATTT-TTA-TT
1 ATTTATTATTT
*
4921750 ATTTACTA-TT
1 ATTTATTATTT
4921760 ATATTATTATTT
1 AT-TTATTATTT
4921772 ATATTATTATTATT
1 AT-TTATTA-T-TT
4921786 ATTTATTGATTT
1 ATTTATT-ATTT
4921798 TATCTTTTCT
Statistics
Matches: 72, Mismatches: 10, Indels: 15
0.74 0.10 0.15
Matches are distributed among these distances:
9 6 0.08
10 12 0.17
11 26 0.36
12 16 0.22
13 7 0.10
14 5 0.07
ACGTcount: A:0.23, C:0.01, G:0.02, T:0.74
Consensus pattern (11 bp):
ATTTATTATTT
Found at i:4921799 original size:9 final size:8
Alignment explanation
Indices: 4921697--4921800 Score: 67
Period size: 9 Copynumber: 12.9 Consensus size: 8
4921687 AGATGGACTC
4921697 ATTTT-TT
1 ATTTTATT
*
4921704 ATTTTTTT
1 ATTTTATT
4921712 ATTTTTATT
1 A-TTTTATT
*
4921721 -TTTTTTT
1 ATTTTATT
*
4921728 TTGTTTATT
1 AT-TTTATT
4921737 A-TTTA-T
1 ATTTTATT
4921743 -TTTTATT
1 ATTTTATT
4921750 ATTTACTATT
1 ATTT--TATT
*
4921760 ATATTATT
1 ATTTTATT
4921768 ATTTATATT
1 ATTT-TATT
4921777 ATTATTATT
1 ATT-TTATT
4921786 A-TTTATT
1 ATTTTATT
4921793 GATTTTAT
1 -ATTTTAT
4921801 CTTTTCTTGA
Statistics
Matches: 78, Mismatches: 6, Indels: 24
0.72 0.06 0.22
Matches are distributed among these distances:
6 5 0.06
7 21 0.27
8 16 0.21
9 28 0.36
10 8 0.10
ACGTcount: A:0.23, C:0.01, G:0.02, T:0.74
Consensus pattern (8 bp):
ATTTTATT
Found at i:4922640 original size:15 final size:15
Alignment explanation
Indices: 4922610--4922638 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
4922600 TGATTTAATT
4922610 TAATAAGAAATAAAA
1 TAATAAGAAATAAAA
4922625 TAATAA-AAATAAAA
1 TAATAAGAAATAAAA
4922639 ATTTTGGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (15 bp):
TAATAAGAAATAAAA
Found at i:4922973 original size:196 final size:196
Alignment explanation
Indices: 4922621--4922974 Score: 504
Period size: 196 Copynumber: 1.8 Consensus size: 196
4922611 AATAAGAAAT
** *
4922621 AAAATAATAAAAATAAAAATTTTGGAAATAAATATTAATTATCCAATAATGAAATTTATAAAAAT
1 AAAATAATAAAAATAAAAATTTTGGAAATAAATACAAATTATCCAAGAATGAAATTTATAAAAAT
* *
4922686 TTCAAATGGTAAATTTTTATATAAAATTCTCAGGTGAGAAATTTTATCTAAATTTGTCCAAAATG
66 TTCAAATGCTAAATTTTTATATAAAATTCTCAGGTGAGAAATTTTATCTAAATTTATCCAAAATG
* *
4922751 GTGGAATAATTTAGATAAATTTTCAATACCAATAATTACTATTTATCTTCAAACAAAAAAAATGA
131 GTGGAATAATTTAAATAAAGTTTCAATACCAATAATTACTATTTATCTTCAAACAAAAAAAATGA
4922816 A
196 A
* * *
4922817 AAAAT-ATAAAAATATAAAAATTTTGG-AATAAATACAAATTATCCAAGGATGAGATTTTTAAAA
1 AAAATAAT-AAAA-ATAAAAATTTTGGAAATAAATACAAATTATCCAAGAATGAAATTTATAAAA
* *
4922880 ATTTCAAATGCTAAATTTTT-TA-AGAATTTTCTAGGTGAGAAATTTCT-TCTAAATTTATCTC-
64 ATTTCAAATGCTAAATTTTTATATAAAATTCTC-AGGTGAGAAATTT-TATCTAAATTTATC-CA
4922941 AAATGGTGGAATAATTTAAATGAAAGTTTCAATA
126 AAATGGTGGAATAATTTAAAT-AAAGTTTCAATA
4922975 AAAGTAATTG
Statistics
Matches: 140, Mismatches: 12, Indels: 12
0.85 0.07 0.07
Matches are distributed among these distances:
194 7 0.05
195 48 0.34
196 72 0.51
197 13 0.09
ACGTcount: A:0.47, C:0.07, G:0.10, T:0.36
Consensus pattern (196 bp):
AAAATAATAAAAATAAAAATTTTGGAAATAAATACAAATTATCCAAGAATGAAATTTATAAAAAT
TTCAAATGCTAAATTTTTATATAAAATTCTCAGGTGAGAAATTTTATCTAAATTTATCCAAAATG
GTGGAATAATTTAAATAAAGTTTCAATACCAATAATTACTATTTATCTTCAAACAAAAAAAATGA
A
Found at i:4924344 original size:17 final size:17
Alignment explanation
Indices: 4924318--4924350 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
4924308 TAACATTTCC
4924318 ATATCATCATT-TCATT
1 ATATCATCATTCTCATT
4924334 ATATGCATCATTCTCAT
1 ATAT-CATCATTCTCAT
4924351 GTTCACATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 7 0.47
18 4 0.27
ACGTcount: A:0.30, C:0.21, G:0.03, T:0.45
Consensus pattern (17 bp):
ATATCATCATTCTCATT
Found at i:4930483 original size:22 final size:22
Alignment explanation
Indices: 4930458--4930505 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
4930448 TGAAAATTTA
*
4930458 TGAGTTCTC-AAATGAGAATCTT
1 TGAGTT-TCAAAATAAGAATCTT
4930480 TGAGTTTCAAAATAAGAATCTT
1 TGAGTTTCAAAATAAGAATCTT
4930502 TGAG
1 TGAG
4930506 ATGTGAAGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 2 0.08
22 22 0.92
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (22 bp):
TGAGTTTCAAAATAAGAATCTT
Found at i:4931152 original size:44 final size:44
Alignment explanation
Indices: 4931081--4931190 Score: 129
Period size: 44 Copynumber: 2.6 Consensus size: 44
4931071 GTCAATGAGC
* * * * *
4931081 TTTTTTCCAAAGTCGTAGTTACTTCTGTTTAAAGGAGTAATTTA
1 TTTTTTCCAAAGTCATGGTTGCCTCTGTTTAAAGGAGCAATTTA
* *
4931125 TTTTTTCAAAAGTCATGGTTGCCTCTGTTTAGAGGAGCAATTTA
1 TTTTTTCCAAAGTCATGGTTGCCTCTGTTTAAAGGAGCAATTTA
4931169 ----TTCCAAAGTCATGGTTGCCTCT
1 TTTTTTCCAAAGTCATGGTTGCCTCT
4931191 ATTGTGGTGC
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
40 21 0.36
44 37 0.64
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (44 bp):
TTTTTTCCAAAGTCATGGTTGCCTCTGTTTAAAGGAGCAATTTA
Found at i:4931386 original size:45 final size:44
Alignment explanation
Indices: 4931244--4931394 Score: 187
Period size: 44 Copynumber: 3.4 Consensus size: 44
4931234 TTGTTGAGTT
* *
4931244 TCTGTTTAGAGGAGCTTTATTTATTTTTTCAAAA-TCATAGAGCC
1 TCTGTTTAGAGAAGCTTTATTTATTTTTT-AAAAGTCATTGAGCC
* * * *
4931288 TCTGTTTAGAAAAGCCTTATTTATTTTTTCAAAGTCGTTGAGCC
1 TCTGTTTAGAGAAGCTTTATTTATTTTTTAAAAGTCATTGAGCC
* * *
4931332 TCTGTTTAGAGGAGCTTTATTAATTTTTCTAAAAGTCATTGAGCA
1 TCTGTTTAGAGAAGCTTTATTTATTTTT-TAAAAGTCATTGAGCC
*
4931377 TCTGATTAGAGAAGCTTT
1 TCTGTTTAGAGAAGCTTT
4931395 GATCAAGATT
Statistics
Matches: 90, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
43 3 0.03
44 58 0.64
45 29 0.32
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.42
Consensus pattern (44 bp):
TCTGTTTAGAGAAGCTTTATTTATTTTTTAAAAGTCATTGAGCC
Found at i:4931596 original size:17 final size:17
Alignment explanation
Indices: 4931574--4931681 Score: 54
Period size: 17 Copynumber: 6.4 Consensus size: 17
4931564 AGATGGGCCC
4931574 ATTTTTTATATTTATTT
1 ATTTTTTATATTTATTT
4931591 A-TTTTTAT-TTGT-TTT
1 ATTTTTTATATT-TATTT
4931606 -TTTTCGTT-TA-TTATTT
1 ATTTT--TTATATTTATTT
*
4931622 A-TTTTTATTATTTA-CT
1 ATTTTTTA-TATTTATTT
*
4931638 ATTATATTATTATTTATATT
1 ATT-TTTTA-TATTTAT-TT
*
4931658 ATTTTTT-TATTGATTTT
1 ATTTTTTATATTTA-TTT
4931675 ATTTTTT
1 ATTTTTT
4931682 CTTGATTAAT
Statistics
Matches: 71, Mismatches: 5, Indels: 30
0.67 0.05 0.28
Matches are distributed among these distances:
14 2 0.03
15 9 0.13
16 20 0.28
17 21 0.30
18 12 0.17
19 3 0.04
20 4 0.06
ACGTcount: A:0.21, C:0.02, G:0.03, T:0.74
Consensus pattern (17 bp):
ATTTTTTATATTTATTT
Found at i:4931597 original size:10 final size:10
Alignment explanation
Indices: 4931578--4931678 Score: 61
Period size: 10 Copynumber: 10.3 Consensus size: 10
4931568 GGGCCCATTT
*
4931578 TTTATATTTA
1 TTTATTTTTA
4931588 TTTATTTTTA
1 TTTATTTTTA
*
4931598 TTTGTTTTT-
1 TTTATTTTTA
*
4931607 TTTCGTTTATTA
1 TTT-ATTT-TTA
4931619 TTTATTTTTA
1 TTTATTTTTA
*
4931629 -TTATTTACTA
1 TTTATTT-TTA
*
4931639 TTATATTATTA
1 TT-TATTTTTA
*
4931650 TTTA-TATTA
1 TTTATTTTTA
4931659 -TT-TTTTTA
1 TTTATTTTTA
*
4931667 TTGA-TTTTA
1 TTTATTTTTA
4931676 TTT
1 TTT
4931679 TTTCTTGATT
Statistics
Matches: 73, Mismatches: 9, Indels: 19
0.72 0.09 0.19
Matches are distributed among these distances:
8 6 0.08
9 22 0.30
10 28 0.38
11 10 0.14
12 7 0.10
ACGTcount: A:0.22, C:0.02, G:0.03, T:0.73
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:4931609 original size:14 final size:14
Alignment explanation
Indices: 4931575--4931681 Score: 54
Period size: 14 Copynumber: 7.4 Consensus size: 14
4931565 GATGGGCCCA
*
4931575 TTTTTTATATTTAT
1 TTTTTTTTATTTAT
* *
4931589 TTATTTTTATTTGT
1 TTTTTTTTATTTAT
**
4931603 TTTTTTTCGTTTAT
1 TTTTTTTTATTTAT
* *
4931617 TATTTATT-TTTAT
1 TTTTTTTTATTTAT
* **
4931630 TATTTACTATTATAT
1 TTTTTTTTATT-TAT
* *
4931645 TATTATTTATATTAT
1 TTTTTTTTAT-TTAT
4931660 TTTTTTATTGATTTTAT
1 TTTTTT-TT-A-TTTAT
4931677 TTTTT
1 TTTTT
4931682 CTTGATTAAT
Statistics
Matches: 71, Mismatches: 16, Indels: 9
0.74 0.17 0.09
Matches are distributed among these distances:
13 12 0.17
14 28 0.39
15 17 0.24
16 3 0.04
17 10 0.14
18 1 0.01
ACGTcount: A:0.21, C:0.02, G:0.03, T:0.75
Consensus pattern (14 bp):
TTTTTTTTATTTAT
Found at i:4932539 original size:15 final size:15
Alignment explanation
Indices: 4932509--4932537 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
4932499 GGATTTAATT
4932509 TAATAAGAAATAAAA
1 TAATAAGAAATAAAA
4932524 TAATAA-AAATAAAA
1 TAATAAGAAATAAAA
4932538 ATTTTGAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (15 bp):
TAATAAGAAATAAAA
Found at i:4937155 original size:20 final size:21
Alignment explanation
Indices: 4937110--4937157 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
4937100 TAAATAATTT
*
4937110 ATAAAA-TAAGATTATCTGGG
1 ATAAAATTAAAATTATCTGGG
* *
4937130 AAAAAATTAAAATTAT-TTGG
1 ATAAAATTAAAATTATCTGGG
4937150 ATAAAATT
1 ATAAAATT
4937158 CATATGTCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.52, C:0.02, G:0.12, T:0.33
Consensus pattern (21 bp):
ATAAAATTAAAATTATCTGGG
Found at i:4939566 original size:16 final size:16
Alignment explanation
Indices: 4939522--4939574 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
4939512 TAAAAAAAAG
*
4939522 AAATTTTAATAT-TTC
1 AAATTTTATTATATTC
*
4939537 GAAATATT-TTATATTC
1 -AAATTTTATTATATTC
*
4939553 AAATTTTATTATATGC
1 AAATTTTATTATATTC
4939569 AAATTT
1 AAATTT
4939575 AATTGTTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
15 9 0.29
16 22 0.71
ACGTcount: A:0.40, C:0.06, G:0.04, T:0.51
Consensus pattern (16 bp):
AAATTTTATTATATTC
Found at i:4942808 original size:2 final size:2
Alignment explanation
Indices: 4942801--4942826 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
4942791 AAATTTAGGC
4942801 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
4942827 CAAAGATTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4943544 original size:22 final size:22
Alignment explanation
Indices: 4943501--4943548 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
4943491 ATTAATTTTT
* *
4943501 TTATATTTAAATATATTTAAAA
1 TTATATTAAAATATATTAAAAA
*
4943523 TTATATTAAAATAATATAAAAAA
1 TTATATTAAAAT-ATATTAAAAA
4943546 TTA
1 TTA
4943549 AAAATATAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (22 bp):
TTATATTAAAATATATTAAAAA
Found at i:4950636 original size:2 final size:2
Alignment explanation
Indices: 4950629--4950657 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
4950619 TTCCTCCAAA
4950629 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4950658 ATTGTTAGCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4953576 original size:24 final size:23
Alignment explanation
Indices: 4953529--4953584 Score: 58
Period size: 24 Copynumber: 2.4 Consensus size: 23
4953519 AGATAAATAT
* *
4953529 AAACCCTAAATAGGTAAAAAGAA
1 AAACCCAAAAAAGGTAAAAAGAA
* **
4953552 ATTACCCAAAAAAGGTAAATGGAA
1 A-AACCCAAAAAAGGTAAAAAGAA
4953576 AAACCCAAA
1 AAACCCAAA
4953585 CTGTAAAATT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
23 8 0.31
24 18 0.69
ACGTcount: A:0.59, C:0.16, G:0.12, T:0.12
Consensus pattern (23 bp):
AAACCCAAAAAAGGTAAAAAGAA
Found at i:4956456 original size:17 final size:17
Alignment explanation
Indices: 4956434--4956466 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
4956424 TGTTAATAAG
4956434 AGCAAA-AACAGGTTAAA
1 AGCAAATAA-AGGTTAAA
4956451 AGCAAATAAAGGTTAA
1 AGCAAATAAAGGTTAA
4956467 GGATTTAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.58, C:0.09, G:0.18, T:0.15
Consensus pattern (17 bp):
AGCAAATAAAGGTTAAA
Found at i:4962372 original size:21 final size:21
Alignment explanation
Indices: 4962342--4962390 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
4962332 ATAATTATTT
*
4962342 TATATAAAAATC-TATTTAAA
1 TATATAAAAATCTTATTAAAA
4962362 TATATTAAAAATCTTATTAAAA
1 TATA-TAAAAATCTTATTAAAA
4962384 TAATATA
1 T-ATATA
4962391 TTAAAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 4 0.16
21 8 0.32
22 10 0.40
23 3 0.12
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (21 bp):
TATATAAAAATCTTATTAAAA
Found at i:4964220 original size:3 final size:3
Alignment explanation
Indices: 4964214--4964254 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
4964204 TTTTGTTTTT
4964214 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
4964255 TTGTAACTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:4979263 original size:13 final size:12
Alignment explanation
Indices: 4979245--4979297 Score: 54
Period size: 13 Copynumber: 4.3 Consensus size: 12
4979235 ATATGGTAAT
4979245 TTATATATTTATA
1 TTATAT-TTTATA
4979258 TTATA-TTTATA
1 TTATATTTTATA
*
4979269 TCATATTATTATA
1 TTATATT-TTATA
**
4979282 TCGTATTTTATA
1 TTATATTTTATA
4979294 TTAT
1 TTAT
4979298 TAAATTTAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
11 10 0.29
12 8 0.24
13 16 0.47
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (12 bp):
TTATATTTTATA
Found at i:4979267 original size:19 final size:19
Alignment explanation
Indices: 4979243--4979305 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
4979233 ATATATGGTA
*
4979243 ATTTATAT-ATTTATATTAT
1 ATTTATATCATAT-TATTAT
4979262 ATTTATATCATATTATTAT
1 ATTTATATCATATTATTAT
* * * *
4979281 ATCGTATTTTATATTATTAA
1 AT-TTATATCATATTATTAT
4979301 ATTTA
1 ATTTA
4979306 GATTTTGCTT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
19 18 0.50
20 18 0.50
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.59
Consensus pattern (19 bp):
ATTTATATCATATTATTAT
Found at i:4985705 original size:37 final size:37
Alignment explanation
Indices: 4985653--4985723 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
4985643 TTTGAGTCTG
4985653 AAATATTAAATTATTAATAAAAATAAT-TTTTAATTTA
1 AAATATTAAATTATT-ATAAAAATAATATTTTAATTTA
* *
4985690 AAATATTACAA-TATTATAATATTAATATTTTAAT
1 AAATATTA-AATTATTATAAAAATAATATTTTAAT
4985724 AGTTTTTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
36 9 0.30
37 19 0.63
38 2 0.07
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (37 bp):
AAATATTAAATTATTATAAAAATAATATTTTAATTTA
Found at i:4987395 original size:21 final size:21
Alignment explanation
Indices: 4987356--4987395 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
4987346 TAAAATTGAT
* *
4987356 AAAAATAATATATAAATTTAA
1 AAAAATAAAAAATAAATTTAA
*
4987377 AAAAATAAAAAATATATTT
1 AAAAATAAAAAATAAATTT
4987396 TATATTAGAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAAATAAAAAATAAATTTAA
Found at i:4993934 original size:11 final size:11
Alignment explanation
Indices: 4993920--4993946 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
4993910 TTCCATATTA
4993920 ATGGCATATCG
1 ATGGCATATCG
4993931 ATGGCATATCG
1 ATGGCATATCG
4993942 ATGGC
1 ATGGC
4993947 TCTCTCATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.26
Consensus pattern (11 bp):
ATGGCATATCG
Found at i:4995821 original size:20 final size:21
Alignment explanation
Indices: 4995798--4995838 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
4995788 TTTATATTAT
*
4995798 AAAATT-TTAAAATATATAAA
1 AAAATTATAAAAATATATAAA
4995818 AAAATTAATAAAAATATATAA
1 AAAATT-ATAAAAATATATAA
4995839 TTTGATTCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
22 12 0.67
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (21 bp):
AAAATTATAAAAATATATAAA
Found at i:4996113 original size:2 final size:2
Alignment explanation
Indices: 4996106--4996141 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
4996096 GGAAGGTTTG
4996106 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4996142 GTCCTTTCTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4999234 original size:13 final size:13
Alignment explanation
Indices: 4999216--4999253 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
4999206 ATTTATTTAG
4999216 AAAAATTAAAGAA-
1 AAAAATTAAA-AAT
4999229 AAAAATTAAAAAT
1 AAAAATTAAAAAT
*
4999242 TAAAATTAAAAA
1 AAAAATTAAAAA
4999254 ATGGGTCCGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 2 0.09
13 21 0.91
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (13 bp):
AAAAATTAAAAAT
Found at i:5001115 original size:2 final size:2
Alignment explanation
Indices: 5001103--5001135 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
5001093 AAATTTTCAG
*
5001103 CA CA CA AA CA CA CA CA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
5001136 GCATGCGCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:5003535 original size:21 final size:22
Alignment explanation
Indices: 5003511--5003551 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
5003501 AAATTTTCTT
5003511 TTTAA-TTTTTTAATTTTTTCC
1 TTTAATTTTTTTAATTTTTTCC
*
5003532 TTTAATTTTTTTTATTTTTT
1 TTTAATTTTTTTAATTTTTT
5003552 ATCCATCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (22 bp):
TTTAATTTTTTTAATTTTTTCC
Found at i:5003943 original size:21 final size:21
Alignment explanation
Indices: 5003914--5003954 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
5003904 TAAAATTATA
*
5003914 TTAATAATTTAAATTCTAACT
1 TTAAAAATTTAAATTCTAACT
* *
5003935 TTAAAAATTTTAATTTTAAC
1 TTAAAAATTTAAATTCTAAC
5003955 AAATAAATAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (21 bp):
TTAAAAATTTAAATTCTAACT
Found at i:5004034 original size:5 final size:5
Alignment explanation
Indices: 5004014--5004080 Score: 53
Period size: 5 Copynumber: 12.8 Consensus size: 5
5004004 TAAAATAATA
* * * * *
5004014 TTATT TAATA TTATT TTATT TATAATA TTATA TTATA TTATT TTATT TTATT
1 TTATT TTATT TTATT TTATT T-T-ATT TTATT TTATT TTATT TTATT TTATT
*
5004066 TTATT ATAATT TTAT
1 TTATT -TTATT TTAT
5004081 ATAGCAAACA
Statistics
Matches: 51, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
5 42 0.82
6 6 0.12
7 3 0.06
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (5 bp):
TTATT
Found at i:5004038 original size:27 final size:27
Alignment explanation
Indices: 5004008--5004061 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
5003998 AAAAAATAAA
5004008 ATAATATTAT-TTAATATTATTTTATTT
1 ATAATATTATATT-ATATTATTTTATTT
5004035 ATAATATTATATTATATTATTTTATTT
1 ATAATATTATATTATATTATTTTATTT
5004062 TATTTTATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 24 0.92
28 2 0.08
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (27 bp):
ATAATATTATATTATATTATTTTATTT
Found at i:5004064 original size:15 final size:15
Alignment explanation
Indices: 5004014--5004082 Score: 63
Period size: 15 Copynumber: 4.7 Consensus size: 15
5004004 TAAAATAATA
*
5004014 TTATTTAATATTATT
1 TTATTTTATATTATT
*
5004029 TTA-TTTATA--ATA
1 TTATTTTATATTATT
*
5004041 TTATATTATATTATT
1 TTATTTTATATTATT
*
5004056 TTATTTTATTTTATT
1 TTATTTTATATTATT
*
5004071 ATAATTTTATAT
1 -TTATTTTATAT
5004083 AGCAAACATT
Statistics
Matches: 42, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
12 5 0.12
13 5 0.12
14 5 0.12
15 18 0.43
16 9 0.21
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATTTTATATTATT
Found at i:5004065 original size:37 final size:36
Alignment explanation
Indices: 5004011--5004082 Score: 108
Period size: 37 Copynumber: 2.0 Consensus size: 36
5004001 AAATAAAATA
5004011 ATATTATTTAATATTATTTTATTTATAATATTATATT
1 ATATTATTTAATATTATTTTA-TTATAATATTATATT
* * *
5004048 ATATTATTTTATTTTATTTTATTATAATTTTATAT
1 ATATTATTTAATATTATTTTATTATAATATTATAT
5004083 AGCAAACATT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
36 13 0.41
37 19 0.59
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (36 bp):
ATATTATTTAATATTATTTTATTATAATATTATATT
Found at i:5009763 original size:21 final size:17
Alignment explanation
Indices: 5009725--5009759 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
5009715 AGCCCGTTGC
5009725 GAAAGCAACGAGTTTGA
1 GAAAGCAACGAGTTTGA
5009742 GAAAGCAACGAGTTTGA
1 GAAAGCAACGAGTTTGA
5009759 G
1 G
5009760 TGAGTTGGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.11, G:0.31, T:0.17
Consensus pattern (17 bp):
GAAAGCAACGAGTTTGA
Found at i:5010458 original size:21 final size:20
Alignment explanation
Indices: 5010432--5010485 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 20
5010422 AATGATATTT
5010432 TAAAATATTTATTTTTAAAAA
1 TAAAAT-TTTATTTTTAAAAA
5010453 TAAAATTTTATATTTTAAAAA
1 TAAAATTTTAT-TTTTAAAAA
*
5010474 TAATATTTTATT
1 TAAAATTTTATT
5010486 AATTTCGGGT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
20 6 0.19
21 25 0.81
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
TAAAATTTTATTTTTAAAAA
Found at i:5011855 original size:15 final size:15
Alignment explanation
Indices: 5011814--5011860 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 15
5011804 GTCTTCCATC
5011814 CTTTTCATTTTTCTT
1 CTTTTCATTTTTCTT
*
5011829 CTCTTCTAATTTTT-TAT
1 CT-TT-TCATTTTTCT-T
5011846 CTTTTCATTTTTCTT
1 CTTTTCATTTTTCTT
5011861 TCCACCCTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
15 10 0.38
16 6 0.23
17 10 0.38
ACGTcount: A:0.11, C:0.19, G:0.00, T:0.70
Consensus pattern (15 bp):
CTTTTCATTTTTCTT
Found at i:5013031 original size:10 final size:10
Alignment explanation
Indices: 5013007--5013036 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
5012997 TATTTTATTC
5013007 ATTAAAATA-
1 ATTAAAATAT
5013016 ATTAAAATAT
1 ATTAAAATAT
5013026 ATTAAAATAT
1 ATTAAAATAT
5013036 A
1 A
5013037 AAAACTTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
ATTAAAATAT
Found at i:5016468 original size:21 final size:22
Alignment explanation
Indices: 5016408--5016465 Score: 116
Period size: 22 Copynumber: 2.6 Consensus size: 22
5016398 GGAGAAGAAA
5016408 GGAAGCTTATAATTTCAAAAAT
1 GGAAGCTTATAATTTCAAAAAT
5016430 GGAAGCTTATAATTTCAAAAAT
1 GGAAGCTTATAATTTCAAAAAT
5016452 GGAAGCTTATAATT
1 GGAAGCTTATAATT
5016466 CAACCCAATG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.43, C:0.09, G:0.16, T:0.33
Consensus pattern (22 bp):
GGAAGCTTATAATTTCAAAAAT
Found at i:5024656 original size:18 final size:18
Alignment explanation
Indices: 5024633--5024674 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
5024623 CTAATTAATA
5024633 AATAAATA-ACTAAAAATT
1 AATAAATACA-TAAAAATT
5024651 AATAAATACATAAAAATT
1 AATAAATACATAAAAATT
5024669 -ATAAAT
1 AATAAAT
5024675 TTTATAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.26
18 16 0.70
19 1 0.04
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.29
Consensus pattern (18 bp):
AATAAATACATAAAAATT
Found at i:5024702 original size:15 final size:17
Alignment explanation
Indices: 5024669--5024706 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
5024659 CATAAAAATT
*
5024669 ATAAATTTTATAATAAA
1 ATAAATTATATAATAAA
5024686 ATAAATTAT-TAAT-AA
1 ATAAATTATATAATAAA
5024701 ATAAAT
1 ATAAAT
5024707 AAAAATATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 8 0.40
16 4 0.20
17 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
ATAAATTATATAATAAA
Found at i:5028229 original size:23 final size:23
Alignment explanation
Indices: 5028195--5028238 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
5028185 TTATAAATAA
*
5028195 ATTCAACAAAATAATATTTTTAT
1 ATTCAACAAAATAATAATTTTAT
*
5028218 ATTCAA-ACAAATTATAATTTT
1 ATTCAACA-AAATAATAATTTT
5028239 CACATAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 1 0.06
23 17 0.94
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (23 bp):
ATTCAACAAAATAATAATTTTAT
Found at i:5034985 original size:21 final size:23
Alignment explanation
Indices: 5034960--5035001 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
5034950 CCAATTAAAT
5034960 AAATAA-ATAAATAAT-TAGTAA
1 AAATAACATAAATAATATAGTAA
*
5034981 AAATAACATAATTAATATAGT
1 AAATAACATAAATAATATAGT
5035002 TTTATCCACC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 8 0.44
23 4 0.22
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (23 bp):
AAATAACATAAATAATATAGTAA
Found at i:5038298 original size:253 final size:254
Alignment explanation
Indices: 5037836--5038412 Score: 725
Period size: 253 Copynumber: 2.3 Consensus size: 254
5037826 TTTTTGTACA
* * ** * * *
5037836 ATGGTATCATTTGATTTATTGACAGCATATAAGATTTATACATTGATAGTGTATCAAATATATAC
1 ATGGTATCATCTGATTTATTGATAGTGTATAAAATCTATACATTGACAGTGTATCAAATATATAC
* * * * *
5037901 TCTTAAACAAAGAATTTATATTTGATGCACTGTCAATGTATAGATTCTATATACTGTTAGTGAAT
66 TCTTAAAAAAAGAATTTATATTTGATGCACTATCAATGTATAGATTCTATACACTGTCAATGAAT
** * * * *
5037966 AAGATGATATTATATAATTAATAAAATGAATTAGATGATGTTACCTCATTATTAGTAATTTTTAA
131 AAGATGATACCATATAATTAATAAAATGAATCAAATGATATTACCTCATTATGAGTAATTTTTAA
* *
5038031 AAAAATATATTAATTTTTATATATTTATTTAAATGATTGATATTTGATCATTAATGA-G
196 AAAAATATATTAATTTTTATATATTTATTTAAAGGATTGATATTTGATAATTAATGATG
* * *
5038089 ATGGTAGCATCTGATTTATTGATAGTGTATAAAATCTATACACTGACAATGTATCAAATATATAC
1 ATGGTATCATCTGATTTATTGATAGTGTATAAAATCTATACATTGACAGTGTATCAAATATATAC
* * *
5038154 TCTTAAATAAAAG-ATTTATATTTGATGCACTATTAGTGTATAGATTCTATACACTGTCAATGCA
66 TCTTAAA-AAAAGAATTTATATTTGATGCACTATCAATGTATAGATTCTATACACTGTCAATGAA
* * * *
5038218 TAGGATGATACCATATCATTAATAAAGTGAATCAAATGATATTATCTCATTAATGAGTAAGTTTT
130 TAAGATGATACCATATAATTAATAAAATGAATCAAATGATATTACCTCATT-ATGAGTAA-TTTT
**** * *
5038283 TTTTTAAA-A-ATTAATTTTTATATATTTATTTTAAGGATTGATATTTGCTAATTAATGATG
193 TAAAAAAATATATTAATTTTTATATATTTATTTAAAGGATTGATATTTGATAATTAATGATG
* * *
5038343 -TGGTATCATCTGATTTATTAATAGTGTATAGAATCTATATATTGACAGTGTATCAAA-ATATAC
1 ATGGTATCATCTGATTTATTGATAGTGTATAAAATCTATACATTGACAGTGTATCAAATATATAC
*
5038406 TCCTAAA
66 TCTTAAA
5038413 CAAATTGATG
Statistics
Matches: 277, Mismatches: 43, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
252 12 0.04
253 244 0.88
254 13 0.05
255 8 0.03
ACGTcount: A:0.38, C:0.08, G:0.12, T:0.41
Consensus pattern (254 bp):
ATGGTATCATCTGATTTATTGATAGTGTATAAAATCTATACATTGACAGTGTATCAAATATATAC
TCTTAAAAAAAGAATTTATATTTGATGCACTATCAATGTATAGATTCTATACACTGTCAATGAAT
AAGATGATACCATATAATTAATAAAATGAATCAAATGATATTACCTCATTATGAGTAATTTTTAA
AAAAATATATTAATTTTTATATATTTATTTAAAGGATTGATATTTGATAATTAATGATG
Found at i:5048580 original size:135 final size:135
Alignment explanation
Indices: 5048376--5048624 Score: 338
Period size: 135 Copynumber: 1.8 Consensus size: 135
5048366 TATTCGTCTA
* * * * * * ** * *
5048376 CACGTGATAAGTGCTTGTTAAAGTGGGTTATCCTATATCTAATAAATTTTTAATTTTTTGTAGCC
1 CACGTGATAAGGGCCTATTAAAGTGAGTTATCCAATATCTAATAAATTTTTAATATCCTATAACC
* * * *
5048441 TTATATTCAGGTTGGGTCCC-TTCACTTACTGTTAATTGATTTTAAGTTGGATCATTGACATGGT
66 TTATATTCAAGTTGAG-CCCATCCACTTACTGTCAATTGATTTTAAGTTGGATCATTGACATGGT
5048505 CACCTC
130 CACCTC
*
5048511 CACGTGATAAGGGCCTATTAAAGTGAGTTATCCAATATCTAATAAATTTTTAATATCCTATAATC
1 CACGTGATAAGGGCCTATTAAAGTGAGTTATCCAATATCTAATAAATTTTTAATATCCTATAACC
*
5048576 TTATATTTAAGTTGAGCCCATCCACTTACTGTCAATTGATTTTAAGTTG
66 TTATATTCAAGTTGAGCCCATCCACTTACTGTCAATTGATTTTAAGTTG
5048625 AATGCTTAAC
Statistics
Matches: 97, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
134 3 0.03
135 94 0.97
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.41
Consensus pattern (135 bp):
CACGTGATAAGGGCCTATTAAAGTGAGTTATCCAATATCTAATAAATTTTTAATATCCTATAACC
TTATATTCAAGTTGAGCCCATCCACTTACTGTCAATTGATTTTAAGTTGGATCATTGACATGGTC
ACCTC
Found at i:5057653 original size:2 final size:2
Alignment explanation
Indices: 5057646--5057671 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
5057636 TGTAACGGAG
5057646 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
5057672 TTGTAAGATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:5060517 original size:15 final size:15
Alignment explanation
Indices: 5060497--5060540 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
5060487 AAATTTATTA
* *
5060497 TATAATGATTACACG
1 TATAATAATTACACC
* *
5060512 TATAATCATTGCACC
1 TATAATAATTACACC
5060527 TATAATAATTACAC
1 TATAATAATTACAC
5060541 ATAATCAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.41, C:0.18, G:0.07, T:0.34
Consensus pattern (15 bp):
TATAATAATTACACC
Found at i:5061079 original size:14 final size:14
Alignment explanation
Indices: 5061060--5061091 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
5061050 TGTAATCTGT
*
5061060 TTAAGTTTTTTTTA
1 TTAAGTTTTTTGTA
5061074 TTAAGTTTTTTGTA
1 TTAAGTTTTTTGTA
5061088 TTAA
1 TTAA
5061092 TAAAAAGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (14 bp):
TTAAGTTTTTTGTA
Found at i:5062139 original size:22 final size:23
Alignment explanation
Indices: 5062111--5062154 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
5062101 CAATAAAGAC
*
5062111 CATTTTTTTTT-TTTGGTGATTG
1 CATTTTTTTTTCTTTCGTGATTG
5062133 CATTTTTTTTTCTTTCGTGATT
1 CATTTTTTTTTCTTTCGTGATT
5062155 CGGTCATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.09, C:0.09, G:0.14, T:0.68
Consensus pattern (23 bp):
CATTTTTTTTTCTTTCGTGATTG
Found at i:5066815 original size:233 final size:233
Alignment explanation
Indices: 5066408--5066873 Score: 905
Period size: 233 Copynumber: 2.0 Consensus size: 233
5066398 ACTATCTACA
5066408 ATAATGGCTGAGTACTCCAATAAGAAAACTCGTGGGGCTTTTATTGCTGCAGTGTTTGCAATGCA
1 ATAATGGCTGAGTACTCCAATAAGAAAACTCGTGGGGCTTTTATTGCTGCAGTGTTTGCAATGCA
* *
5066473 AGGATTCGGGATTCTTGCTGGGGGAGCCGTGGCTATAGTTACTGCATCAATCTTCCGAGCAATTT
66 AGGATTCCGAATTCTTGCTGGGGGAGCCGTGGCTATAGTTACTGCATCAATCTTCCGAGCAATTT
5066538 ATAAAGCTCCGGCTTACTCAGTAGATCCGTTTGGTTCAACTGTGCCCCATGCTGACCATGTATGG
131 ATAAAGCTCCGGCTTACTCAGTAGATCCGTTTGGTTCAACTGTGCCCCATGCTGACCATGTATGG
*
5066603 AGGATTATTCTCATGTTTGGTGCTTGGCCAGCTGCTTT
196 AAGATTATTCTCATGTTTGGTGCTTGGCCAGCTGCTTT
5066641 ATAATGGCTGAGTACTCCAATAAGAAAACTCGTGGGGCTTTTATTGCTGCAGTGTTTGCAATGCA
1 ATAATGGCTGAGTACTCCAATAAGAAAACTCGTGGGGCTTTTATTGCTGCAGTGTTTGCAATGCA
5066706 AGGATTCCGAATTCTTGCTGGGGGAGCCGTGGCTATAGTTACTGCATCAATCTTCCGAGCAATTT
66 AGGATTCCGAATTCTTGCTGGGGGAGCCGTGGCTATAGTTACTGCATCAATCTTCCGAGCAATTT
5066771 ATAAAGCTCCGGCTTACTCAGTAGATCCGTTTGGTTCAACTGTGCCCCATGCTGACCATGTATGG
131 ATAAAGCTCCGGCTTACTCAGTAGATCCGTTTGGTTCAACTGTGCCCCATGCTGACCATGTATGG
5066836 AAGATTATTCTCATGTTTGGTGCTTGGCCAGCTGCTTT
196 AAGATTATTCTCATGTTTGGTGCTTGGCCAGCTGCTTT
5066874 GACATATTAT
Statistics
Matches: 230, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
233 230 1.00
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (233 bp):
ATAATGGCTGAGTACTCCAATAAGAAAACTCGTGGGGCTTTTATTGCTGCAGTGTTTGCAATGCA
AGGATTCCGAATTCTTGCTGGGGGAGCCGTGGCTATAGTTACTGCATCAATCTTCCGAGCAATTT
ATAAAGCTCCGGCTTACTCAGTAGATCCGTTTGGTTCAACTGTGCCCCATGCTGACCATGTATGG
AAGATTATTCTCATGTTTGGTGCTTGGCCAGCTGCTTT
Found at i:5071365 original size:22 final size:22
Alignment explanation
Indices: 5071337--5071408 Score: 74
Period size: 22 Copynumber: 3.2 Consensus size: 22
5071327 GTTTGAAAAG
*
5071337 AAAAAATGATCTTTATTATTTA
1 AAAAAATGATATTTATTATTTA
* *
5071359 AAAAAAT-AGTTTTTGTTATTTA
1 AAAAAATGA-TATTTATTATTTA
* *
5071381 ACAAAAATGATATTTTTTATATA
1 A-AAAAATGATATTTATTATTTA
5071404 AAAAA
1 AAAAA
5071409 TGCAATTTTG
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
21 1 0.02
22 23 0.55
23 17 0.40
24 1 0.02
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.43
Consensus pattern (22 bp):
AAAAAATGATATTTATTATTTA
Found at i:5071849 original size:24 final size:22
Alignment explanation
Indices: 5071794--5071846 Score: 65
Period size: 20 Copynumber: 2.5 Consensus size: 22
5071784 AAACATGGTC
*
5071794 TTTGTTATTT-A-AAAAAGTAT
1 TTTGTTATTTAATAAAAACTAT
5071814 TTTGTTATTTAATAAAAACTAT
1 TTTGTTATTTAATAAAAACTAT
*
5071836 GTTTTTTATTT
1 -TTTGTTATTT
5071847 TAAAGATGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 10 0.36
21 1 0.04
22 8 0.29
23 9 0.32
ACGTcount: A:0.34, C:0.02, G:0.08, T:0.57
Consensus pattern (22 bp):
TTTGTTATTTAATAAAAACTAT
Found at i:5072200 original size:26 final size:26
Alignment explanation
Indices: 5072171--5072223 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5072161 TCAATAAATT
* *
5072171 AAATAATATTTTTTTATTTATTAATA
1 AAATAATATTATTTAATTTATTAATA
5072197 AAATAATATTATTTAATTTATTAATA
1 AAATAATATTATTTAATTTATTAATA
5072223 A
1 A
5072224 TATATAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (26 bp):
AAATAATATTATTTAATTTATTAATA
Found at i:5073384 original size:18 final size:18
Alignment explanation
Indices: 5073363--5073468 Score: 83
Period size: 18 Copynumber: 5.6 Consensus size: 18
5073353 TATATCACAA
5073363 AATATTAATAAATAATAT
1 AATATTAATAAATAATAT
*
5073381 -A-A-TAATAAATATTAGT
1 AATATTAATAAATAATA-T
5073397 AATTTAATTAATAAATATTATAAT
1 AA--T-ATTAATAAATA--AT-AT
5073421 AATATATGAATAAATAATAT
1 AATAT-T-AATAAATAATAT
*
5073441 ATTATTAATAAATAATAT
1 AATATTAATAAATAATAT
*
5073459 ACTATTAATA
1 AATATTAATA
5073469 TAACATGTTA
Statistics
Matches: 72, Mismatches: 4, Indels: 24
0.72 0.04 0.24
Matches are distributed among these distances:
15 11 0.15
16 2 0.03
17 2 0.03
18 21 0.29
19 1 0.01
20 6 0.08
21 5 0.07
22 11 0.15
23 8 0.11
24 4 0.06
25 1 0.01
ACGTcount: A:0.57, C:0.01, G:0.02, T:0.41
Consensus pattern (18 bp):
AATATTAATAAATAATAT
Found at i:5073386 original size:15 final size:15
Alignment explanation
Indices: 5073368--5073459 Score: 73
Period size: 15 Copynumber: 5.9 Consensus size: 15
5073358 CACAAAATAT
5073368 TAATAAATAATATAA
1 TAATAAATAATATAA
*
5073383 TAATAAATATTAGTAA
1 TAATAAATAATA-TAA
* *
5073399 T-TTAATTAATA-AA
1 TAATAAATAATATAA
*
5073412 TATTATAATAATAT-A
1 TAATA-AATAATATAA
5073427 TGAATAAATAATATATTA
1 T-AATAAATAATATA--A
5073445 TTAATAAATAATATA
1 -TAATAAATAATATA
5073460 CTATTAATAT
Statistics
Matches: 62, Mismatches: 6, Indels: 15
0.75 0.07 0.18
Matches are distributed among these distances:
13 3 0.05
14 3 0.05
15 34 0.55
16 7 0.11
18 14 0.23
19 1 0.02
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (15 bp):
TAATAAATAATATAA
Found at i:5073411 original size:22 final size:20
Alignment explanation
Indices: 5073374--5073471 Score: 79
Period size: 23 Copynumber: 4.5 Consensus size: 20
5073364 ATATTAATAA
5073374 ATAATATAATAATAAATATT
1 ATAATATAATAATAAATATT
*
5073394 AGTAATTTAATTAATAAATATT
1 A-TAATATAA-TAATAAATATT
*
5073416 ATAATAATATATGAATAAATAAT
1 ATAAT-ATA-AT-AATAAATATT
* *
5073439 ATATTATTAATAAATAATATACT
1 ATAATA-TAAT-AATAA-ATATT
5073462 ATTAATATAA
1 A-TAATATAA
5073472 CATGTTAATA
Statistics
Matches: 63, Mismatches: 7, Indels: 13
0.76 0.08 0.16
Matches are distributed among these distances:
20 1 0.02
21 11 0.17
22 23 0.37
23 24 0.38
24 4 0.06
ACGTcount: A:0.56, C:0.01, G:0.02, T:0.41
Consensus pattern (20 bp):
ATAATATAATAATAAATATT
Found at i:5074628 original size:18 final size:17
Alignment explanation
Indices: 5074587--5074631 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
5074577 ACAAAATTTT
5074587 TATTTTTA-AGTTTCAAA
1 TATTTTTATA-TTTCAAA
5074604 TATTTTTATATTTCAAA
1 TATTTTTATATTTCAAA
5074621 TATATTTTATA
1 TAT-TTTTATA
5074632 AAATACTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 18 0.69
18 8 0.31
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (17 bp):
TATTTTTATATTTCAAA
Found at i:5074874 original size:31 final size:30
Alignment explanation
Indices: 5074809--5074874 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
5074799 ATATTAGGTA
* **
5074809 TAAAATATTAAATAAAACTCTATATGGTTT
1 TAAAATATTAAATAAAAATCTATATCATTT
*
5074839 TAAAATATTAAATAAAAATTTCATATCATTT
1 TAAAATATTAAATAAAAATCT-ATATCATTT
5074870 TAAAA
1 TAAAA
5074875 AATAAATTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 19 0.61
31 12 0.39
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (30 bp):
TAAAATATTAAATAAAAATCTATATCATTT
Found at i:5075199 original size:31 final size:31
Alignment explanation
Indices: 5075134--5075251 Score: 96
Period size: 32 Copynumber: 3.7 Consensus size: 31
5075124 AAATCAATTC
* * * * *
5075134 TTTAAAATAATAATGAAATTTTCATTTAACAT
1 TTTAAAATGAT-ATGAATTTTTTACTTAAAAT
5075166 TTTAAAATGATATGAATTTTTTTA-TTAAAAT
1 TTTAAAATGATATGAA-TTTTTTACTTAAAAT
** * *
5075197 TTTTTAATCGATATAGAAATTTTTACTT-AATT
1 TTTAAAAT-GATAT-GAATTTTTTACTTAAAAT
5075229 TTTAAAATGATATGAAATTTTTT
1 TTTAAAATGATATG-AATTTTTT
5075252 CAAAAGAATT
Statistics
Matches: 70, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
30 1 0.01
31 29 0.41
32 35 0.50
33 5 0.07
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.50
Consensus pattern (31 bp):
TTTAAAATGATATGAATTTTTTACTTAAAAT
Found at i:5082487 original size:2 final size:2
Alignment explanation
Indices: 5082480--5082516 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
5082470 ATATAAATTC
* *
5082480 AT AT AT AT AC AT AT AT AT AT AT TT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
5082517 ATCTGACCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:5082513 original size:12 final size:12
Alignment explanation
Indices: 5082470--5082513 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
5082460 GATGTACCAA
* *
5082470 ATATAAATTCAT
1 ATATATATTTAT
**
5082482 ATATATACATAT
1 ATATATATTTAT
5082494 ATATATATTTAT
1 ATATATATTTAT
5082506 ATATATAT
1 ATATATAT
5082514 ATAATCTGAC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (12 bp):
ATATATATTTAT
Found at i:5098990 original size:5 final size:5
Alignment explanation
Indices: 5098980--5099005 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
5098970 TAAGATGTTC
5098980 TTAAT TTAAT TTAAT TTAAT TTAAT T
1 TTAAT TTAAT TTAAT TTAAT TTAAT T
5099006 AATATGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TTAAT
Found at i:5100311 original size:6 final size:6
Alignment explanation
Indices: 5100295--5100335 Score: 66
Period size: 6 Copynumber: 6.8 Consensus size: 6
5100285 CCGGGTAATT
5100295 CTTTTC C-TTTC CTTTTC CTTTTC CTTTTC CTTTTCC CTTTT
1 CTTTTC CTTTTC CTTTTC CTTTTC CTTTTC CTTTT-C CTTTT
5100336 TAACCTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.15
6 22 0.67
7 6 0.18
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (6 bp):
CTTTTC
Found at i:5105671 original size:23 final size:22
Alignment explanation
Indices: 5105645--5105690 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
5105635 TAAAATTAAA
5105645 TATTATAATT-TGATTTTGTTATT
1 TATTA-AATTATGATTTTG-TATT
*
5105668 TATTAATTTATGATTTTGTATT
1 TATTAAATTATGATTTTGTATT
5105690 T
1 T
5105691 GAAATTTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.65
Consensus pattern (22 bp):
TATTAAATTATGATTTTGTATT
Found at i:5110790 original size:19 final size:19
Alignment explanation
Indices: 5110758--5110809 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
5110748 TTAGAGAGAG
5110758 AGAAACAAAG-AAAT-AAAGA
1 AGAAA-AAAGAAAATGAAA-A
5110777 AGAAAAAAGAAAATGAAAA
1 AGAAAAAAGAAAATGAAAA
*
5110796 AGACAAAGAGAAAA
1 AGA-AAAAAGAAAA
5110810 GTTTATTCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 4 0.14
19 13 0.45
20 12 0.41
ACGTcount: A:0.75, C:0.04, G:0.17, T:0.04
Consensus pattern (19 bp):
AGAAAAAAGAAAATGAAAA
Found at i:5111113 original size:17 final size:17
Alignment explanation
Indices: 5111091--5111125 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
5111081 ATAACAAGAT
5111091 TCTATGAAACTTGACTA
1 TCTATGAAACTTGACTA
5111108 TCTATGAAACTTGACTA
1 TCTATGAAACTTGACTA
5111125 T
1 T
5111126 GTAATTGGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.37
Consensus pattern (17 bp):
TCTATGAAACTTGACTA
Found at i:5119395 original size:35 final size:35
Alignment explanation
Indices: 5119345--5119412 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
5119335 TCCTATAGAG
* *
5119345 TATTATCAACCCAAACAAACACATACCTATATGCA
1 TATTATCAACACAAACAAACACATACCCATATGCA
* *
5119380 TATTCTCAACACAAACAAATACATACCCATATG
1 TATTATCAACACAAACAAACACATACCCATATG
5119413 TACTCATATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.46, C:0.28, G:0.03, T:0.24
Consensus pattern (35 bp):
TATTATCAACACAAACAAACACATACCCATATGCA
Found at i:5120978 original size:187 final size:186
Alignment explanation
Indices: 5120664--5121024 Score: 605
Period size: 187 Copynumber: 1.9 Consensus size: 186
5120654 CACTCTTAAT
*
5120664 TATGAATTTAGACATTGCTTTTGATTTTCTTTGGATATATACTGTAAAGCTAAACCTTGTCCATT
1 TATGAATTTAGACATTGCTTTTGATTTTCTTTGGATATATACTGAAAAGCTAAACCTTGTCCATT
* * *
5120729 AAGTGCAATTCATGATGAAAAAAGGGACCTTGATGACAATGAAAGCAATTTATGAGCCCTAGCAT
66 AAGTGCAATTCATGATGAAAAAAAGGACCCTAATGACAATGAAAGCAATTTATGAGCCCTAGCAT
*
5120794 GAAATTCAAATGTAAGACGAATATAATCGTATGGTTGGTAGCAAGGTAGATATAAC
131 GAAATTCAAATGTAAGACGAATATAATCGTATGCTTGGTAGCAAGGTAGATATAAC
5120850 TATGAATTTAGACATTGCTTTTGATTTTCTTTGGATATATACTGGAAAAGCTAAACCTTGTCCAT
1 TATGAATTTAGACATTGCTTTTGATTTTCTTTGGATATATACT-GAAAAGCTAAACCTTGTCCAT
* *
5120915 TAAGTGCAATTCATGATGAAAAAAAGGACCCTAATGATAATGAAAGCAATTTCTGAGCCCTAGCA
65 TAAGTGCAATTCATGATGAAAAAAAGGACCCTAATGACAATGAAAGCAATTTATGAGCCCTAGCA
* * * * *
5120980 TGAGATTCGAATGTAAGATGGATATATTCGTATGCTTGGTAGCAA
130 TGAAATTCAAATGTAAGACGAATATAATCGTATGCTTGGTAGCAA
5121025 AGCAGATAAA
Statistics
Matches: 162, Mismatches: 12, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
186 43 0.27
187 119 0.73
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.32
Consensus pattern (186 bp):
TATGAATTTAGACATTGCTTTTGATTTTCTTTGGATATATACTGAAAAGCTAAACCTTGTCCATT
AAGTGCAATTCATGATGAAAAAAAGGACCCTAATGACAATGAAAGCAATTTATGAGCCCTAGCAT
GAAATTCAAATGTAAGACGAATATAATCGTATGCTTGGTAGCAAGGTAGATATAAC
Done.