Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 210 of 402
Found at i:21780891 original size:26 final size:26
Alignment explanation
Indices: 21780861--21780913 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21780851 GTTGGCTTAG
21780861 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21780887 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21780913 G
1 G
21780914 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21781270 original size:26 final size:26
Alignment explanation
Indices: 21781240--21781291 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
21781230 TTGACTTAGA
21781240 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
21781266 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
21781292 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:21788866 original size:158 final size:159
Alignment explanation
Indices: 21788600--21789066 Score: 464
Period size: 158 Copynumber: 3.0 Consensus size: 159
21788590 TGCCTAAGCC
* * *
21788600 AACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGG-TAAAATACGCAAGTTGGGGAT
1 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCT-AAATGCGCAAGTTAGGGAT
* * * *
21788664 CGGCCCGAT-CCCCTCTGCGTGCTGTCGATCCTGCTACTGTAACCCTCGGTCCGATCTGATCTTA
65 CGGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCGCAACCCTCGGTCCGATCTGATCTTA
* * *
21788728 GATTGGGAATGAACTTCGTATGCAAAAGTA
130 GAATGGGAATGAACTCCGTATGCAAAAGGA
* * * * * * *
21788758 AACCCACGAAACGAGCATGCGGG-GCTGAGCCAGCTGAAGAGGCTTAATGCGCAAGTTAGGGATT
1 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCTAAATGCGCAAGTTAGGGATC
* * * * **
21788822 GGCCCGGTCCCCCTCTGCGTGCTG-CTGGTCCCGCTGCCACAACCCTCGATCCGA-CTGGGGCTT
66 GGCCCGATCCCCCTCTGCGTGCTGTC-GATCCCGCTGCCGCAACCCTCGGTCCGATCT-GATCTT
* ** *
21788885 AGACAT-GGAATGAACTCCCTATGCCTAAGGC
129 AGA-ATGGGAATGAACTCCGTATGCAAAAGGA
* * * * * *
21788916 AACCCACGAAGCGGGCGTGCGGGTGCTCAGTCGGCCGGAGAGGC-AGAATGCGTAAGTCAGGGAT
1 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCTA-AATGCGCAAGTTAGGGAT
* * * * * * *
21788980 CAGTCCGATCCCCC-CTGTGTGCTATCGATCCGGCTGCCGCAACCCTCGGTCTGGTCTGATCTTA
65 CGGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCGCAACCCTCGGTCCGATCTGATCTTA
*
21789044 GACTGGGAATGAACTCCGTATGC
130 GAATGGGAATGAACTCCGTATGC
21789067 TTAGACTGGG
Statistics
Matches: 245, Mismatches: 54, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
157 41 0.17
158 159 0.65
159 45 0.18
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (159 bp):
AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCTAAATGCGCAAGTTAGGGATC
GGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCGCAACCCTCGGTCCGATCTGATCTTAG
AATGGGAATGAACTCCGTATGCAAAAGGA
Found at i:21789076 original size:26 final size:26
Alignment explanation
Indices: 21789040--21789092 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21789030 CTGGTCTGAT
21789040 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21789066 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21789092 C
1 C
21789093 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21789256 original size:185 final size:183
Alignment explanation
Indices: 21788881--21789436 Score: 663
Period size: 185 Copynumber: 3.0 Consensus size: 183
21788871 TCCGACTGGG
* * * * * *
21788881 GCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCACGAAGCGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTCCTCAG
* * * *
21788946 TCGGCCGGAGAGGCAGAATGCGTAAGTCAGGGATCAGTCCGATCCCC-CCTGTGTGCTATCGATC
66 TCGGTCGGAGAGGCAGAATGCGCAAGTCAGGGA-CAGACCGATCCCCTCCTGCGTGCTATCGATC
* * *
21789010 CGGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
130 CTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACT-GGAATGAACTCCGTAT
* * * *
21789065 GCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGTCCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTCCTCA
* * * * * * * *
21789129 GTCGGTCGGAGAGGTAGAATGTGCAAGCCAGGGACAGGCTCGGTCCCCTCCGGCATGCTGTCGAT
65 GTCGGTCGGAGAGGCAGAATGCGCAAGTCAGGGACAGAC-CGATCCCCTCCTGCGTGCTATCGAT
* * *
21789194 CCTGCTGTAGCAACCCTTGGTCCGGTCTGATCTTAGACTGAGAATGAACTCCATAT
129 CCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTG-GAATGAACTCCGTAT
* *
21789250 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTG-GGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTC-CTCA
* * * * *
21789314 GCCGGTCGGAGAGGCAGAATACACAAGTCAGGGACCGACCCGAT-CCCTCCATTCGTGCTATCGA
65 GTCGGTCGGAGAGGCAGAATGCGCAAGTCAGGGACAGA-CCGATCCCCTCC-TGCGTGCTATCGA
*
21789378 TCCTGCTGTCGTAACCCTCGGTCCGGT-TCGATCTTAGACTGGTAATGAACTCCGTAT
128 TCCTGCTGTCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGG-AATGAACTCCGTAT
21789435 GC
1 GC
21789437 CTAAGTTAAA
Statistics
Matches: 313, Mismatches: 49, Indels: 19
0.82 0.13 0.05
Matches are distributed among these distances:
183 5 0.02
184 102 0.33
185 204 0.65
186 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTCCTCAG
TCGGTCGGAGAGGCAGAATGCGCAAGTCAGGGACAGACCGATCCCCTCCTGCGTGCTATCGATCC
TGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGAATGAACTCCGTAT
Found at i:21789264 original size:26 final size:26
Alignment explanation
Indices: 21789225--21789277 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21789215 CCGGTCTGAT
21789225 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
21789251 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCATATG
21789277 C
1 C
21789278 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:21789679 original size:159 final size:156
Alignment explanation
Indices: 21789250--21789682 Score: 401
Period size: 159 Copynumber: 2.7 Consensus size: 156
21789240 AACTCCATAT
* *
21789250 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGGGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
21789315 CCGGTCGGAGAGGCAGAA-TACACAAGTCAGGGACCGACCCGATCCCTCCATTCGTGCTATCGAT
66 CC-GACGGAGAGGCAGAATTACGCAAGCCAGGGATCGA-CCGATCCC-CC-TTCATGCTACCGAT
* * ** * * *
21789379 CCTGCTGTCGTAACCCTCGGTCCGGTTCGA
127 CCCGCTGCCACAACCCTCGATCCGGCTAGA
* ** * * * *
21789409 TCTTAGAC-TGGTAATGAACTCCGTATGCCTAAGTTAAACCATGAAACGAGCGTGCAGGCGTTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * *
21789473 GCCGACCGAAGAGGCATAATGT--GCAAGCCTA-GGATCGATCCGGTCCCCCTCTACATGCTGCC
65 GCCGA-CGGAGAGGCAGAAT-TACGCAAGCC-AGGGATCGA-CCGATCCCCCT-T-CATGCTACC
* *
21789535 GGTCCCGCTGCCACAACCCTCGATCCGGCTAGG
124 GATCCCGCTGCCACAACCCTCGATCCGGCTAGA
* * * * *
21789568 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
*
21789633 CCGACAGGAGAGGCA-AATTACGCAAGCCGGGGATCGACCTGATCCCCCTT
66 CCGAC-GGAGAGGCAGAATTACGCAAGCCAGGGATCGACC-GATCCCCCTT
21789683 GCGTACTGTC
Statistics
Matches: 217, Mismatches: 44, Indels: 27
0.75 0.15 0.09
Matches are distributed among these distances:
157 2 0.01
158 14 0.06
159 196 0.90
160 4 0.02
161 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGACGGAGAGGCAGAATTACGCAAGCCAGGGATCGACCGATCCCCCTTCATGCTACCGATCCCG
CTGCCACAACCCTCGATCCGGCTAGA
Found at i:21789763 original size:26 final size:26
Alignment explanation
Indices: 21789727--21789779 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21789717 CCGATCCGAT
21789727 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21789753 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21789779 C
1 C
21789780 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21790791 original size:158 final size:158
Alignment explanation
Indices: 21790448--21790791 Score: 374
Period size: 158 Copynumber: 2.2 Consensus size: 158
21790438 AACTCGGTAT
* * * *
21790448 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCATTGAACGAGCGTACGGGCGCTCAG
1 GCTTA-ACATGGAATGAACTCCGTATGCCTAAGCCAACCCATCGAACGAGCGTACGGGCGCTAAC
* * *
21790513 TCGACCGGAGAGGCTGAATGCACAAGCCGGGGATCGGCCCAGTCCCCCTCTGCGTGCTGGCCATC
65 TCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCCTCTGCGTGCTGACCATC
* * * *
21790578 CCGCTGCCACAACCCTCGATCCGGCTGGG
130 CCGCTACCACAACCCTCGATCCAGCTCGA
* * * *
21790607 GCTTAACATGGAATAAACTCCCTATGCCTAAGCCAACCCA-CGAAACGGGCGTGCGGGCGCTTAA
1 GCTTAACATGGAATGAACTCCGTATGCCTAAGCCAACCCATCG-AACGAGCGTACGGGCGC-TAA
* * *
21790671 CT-GGCCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCAGT-CCCCTCTGTGTGCT-ACCGA
64 CTCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCCTCTGCGTGCTGACC-A
** * * *
21790733 TCTTGCTACCACAACCCTCGGTCTAGTTCGA
128 TCCCGCTACCACAACCCTCGATCCAGCTCGA
* *
21790764 TCTTAGAC-TAGGAATGAACTCTGTATGC
1 GCTTA-ACAT-GGAATGAACTCCGTATGC
21790792 TTAGACTGGG
Statistics
Matches: 153, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
156 2 0.01
157 42 0.27
158 101 0.66
159 8 0.05
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAACATGGAATGAACTCCGTATGCCTAAGCCAACCCATCGAACGAGCGTACGGGCGCTAACT
CGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCCTCTGCGTGCTGACCATCC
CGCTACCACAACCCTCGATCCAGCTCGA
Found at i:21790806 original size:26 final size:26
Alignment explanation
Indices: 21790765--21790815 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
21790755 CTAGTTCGAT
*
21790765 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
21790791 CTTAGACTGGGCATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
21790816 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21791000 original size:26 final size:26
Alignment explanation
Indices: 21790962--21791014 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21790952 CCGATCCGAT
* *
21790962 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACACCGTATG
21790988 CTTAGACAT-GGAATGAACACCGTATG
1 CTTAGAC-TGGGAATGAACACCGTATG
21791014 C
1 C
21791015 CTCAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:21791476 original size:158 final size:158
Alignment explanation
Indices: 21790988--21791488 Score: 449
Period size: 158 Copynumber: 3.2 Consensus size: 158
21790978 ACTCTGTATG
* * * *
21790988 CTTAGACATGGAATGAACACCGTATGCCTCAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAAC
* * * * * * * *
21791053 CGACCGGAGAGGTAGAATGCGTAAGTCGGGGACCGGC-CAAGTCCCACCTACGTGCTGGCAATCC
66 CGATCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACGC-AGTCCCCCCTGCGTGCTGTCGATCC
* * *
21791117 TACTACCGCAACCCTCGGTTCAGTCTGAT
130 TGCTGCCGCAACCCTCGGTCCAGTCTGAT
* ** * * * *
21791146 CCTAGAC-TGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTTCGGGCCCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAA
* * * * * * * *
21791210 CTGGTCGGAGAGGCATAATACGTAAGTCGGGGATC-A-GCCCGATCCCCCTCTGCGTGCTATTGG
65 CCGATCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACG-CAG-TCCCCC-CTGCGTGCTGTCGA
* * * * **
21791273 TCCCGTTGCCACAACCCTCGGTCCGGT-TGGGG
127 TCCTGCTGCCGCAACCCTCGGTCCAGTCT-GAT
* * * *
21791305 CTTAG-CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGTTGAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAAC
* * * * *
21791369 CGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACGCAGTCCCCCCTGCGTACTGTCGTTCCT
66 CGATCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACGCAGTCCCCCCTGCGTGCTGTCGATCCT
* * *
21791434 GCTGTCGTAACCCTCGATCCAGTCTGAT
131 GCTGCCGCAACCCTCGGTCCAGTCTGAT
*
21791462 CTTAGAC-TGTGAATGAACTCTGTATGC
1 CTTAGACATG-GAATGAACTCCGTATGC
21791489 TTAAACTGGG
Statistics
Matches: 261, Mismatches: 70, Indels: 24
0.74 0.20 0.07
Matches are distributed among these distances:
157 40 0.15
158 183 0.70
159 37 0.14
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAAC
CGATCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACGCAGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTCCAGTCTGAT
Found at i:21791491 original size:26 final size:26
Alignment explanation
Indices: 21791462--21791514 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21791452 CCAGTCTGAT
* * *
21791462 CTTAGACTGTGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
21791488 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
21791514 C
1 C
21791515 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:21792382 original size:26 final size:26
Alignment explanation
Indices: 21792341--21792393 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21792331 TCGGTCTGAT
21792341 CTTAGACTGGCAATGAACTCTATATG
1 CTTAGACTGGCAATGAACTCTATATG
** *
21792367 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCTATATG
21792393 C
1 C
21792394 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCTATATG
Found at i:21793598 original size:26 final size:26
Alignment explanation
Indices: 21793569--21793621 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21793559 CTGGTCCGAT
21793569 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
21793595 CTTAGACATGGAATGGACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21793621 C
1 C
21793622 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21794098 original size:158 final size:155
Alignment explanation
Indices: 21793595--21794095 Score: 411
Period size: 159 Copynumber: 3.2 Consensus size: 155
21793585 ACTCCGTATG
* * * * *
21793595 CTTAGACATGGAATGGACTCTGTATGCCTAAGCCAACACATGAAACGAGCGTGCGGTGCTCAATT
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGTT
* * * * * * *
21793660 GGTCAGAGAGGCAGAATGCAAAAGCTGGGGATCG-GCTCGATCCCCCTTGCATGCTGTCGATTCT
66 GGTCGGAGAGGCAGAATGCACAAGC-GAGGATCGACCT-GATCCCCC-TGCGTGCTGCCGATCCT
* *
21793724 GTTGCCGTAACCCTC-ATTCCGGTCCAAT
128 GTTGCCGCAACCCTCGA-TCCGGTCCGAT
* * * * *
21793752 CTTAGAC-TAGGACTGAACT-TCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCAGGCGCTGA
1 CTTAGACAT-GGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTCA
** * * * * * * * *
21793815 GCCGATCGGAGAGGCATAATACGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTACTGCCGGT
63 GTTGGTCGGAGAGGCAGAATGCACAAGCGA-GGATCGACCTGAT-CCCC-CTGCGTGCTGCCGAT
* * * * **
21793880 CCTGCTACCACAACTCTCGATCCGGCTGGGA-
125 CCTGTTGCCGCAACCCTCGATCCGG-TCCGAT
** * *
21793911 CTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTCAGT
* * *
21793976 TGGCCGGAGAGGCAGAATGCCCAAGTCGAGGATCGACCTGGTCACCCCTGCGTGCTGCCGATCCT
65 TGGTCGGAGAGGCAGAATGCACAAG-CGAGGATCGACCTGATC-CCCCTGCGTGCTGCCGATCCT
* * * *
21794041 ATTGTCGCAACCCTCGGTCCAGTCCGAT
128 GTTGCCGCAACCCTCGATCCGGTCCGAT
21794069 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCTGTATGC
21794096 TTAGACTGAG
Statistics
Matches: 260, Mismatches: 69, Indels: 29
0.73 0.19 0.08
Matches are distributed among these distances:
156 2 0.01
157 47 0.18
158 88 0.34
159 116 0.45
160 7 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGTT
GGTCGGAGAGGCAGAATGCACAAGCGAGGATCGACCTGATCCCCCTGCGTGCTGCCGATCCTGTT
GCCGCAACCCTCGATCCGGTCCGAT
Found at i:21794110 original size:26 final size:26
Alignment explanation
Indices: 21794069--21794119 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
21794059 CCAGTCCGAT
*
21794069 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21794095 CTTAGACTGAGG-ATGACCTCCGTAT
1 CTTAGACTG-GGAATGAACTCCGTAT
21794120 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21794470 original size:25 final size:26
Alignment explanation
Indices: 21794431--21794482 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
21794421 CCTGTCCGAT
21794431 CTTAGACTGGAAATGAACT-CGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
21794456 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
21794482 C
1 C
21794483 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:21795322 original size:169 final size:171
Alignment explanation
Indices: 21794956--21795323 Score: 390
Period size: 171 Copynumber: 2.2 Consensus size: 171
21794946 AACTCTGTAT
* * * ** * * *
21794956 GCTTAGACTAGGG-ATGAACTCCGTACGCCTAAGTCAAGCCACGAAATGAGCGTGTGGGTGCTCA
1 GCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGGGCCCA
* ** * * *
21795020 GCCGGCCGGAGAGGCATAATGCACAAGCCAGGGATCAACCCGGTCCCCTTCTACGTGCTGTCGAT
65 ACCGGCCAAAGAGGCAGAATGCACAAGCCAGGGATCAACCCGGTCCCCTTCTACATGCTGCCGAT
*
21795085 CTTGCTGTCAGTCCTGCTGCCACAACCCTCGATCCAGCTGGG
130 CTTGCTGTCAGTCCTGCTGCCACAACCCTCGATCCAGCTGGA
* *
21795127 GCTTAGACAT-CGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGGGCCCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGGGCCCA
* * ** *
21795191 ACCGGTCAAAGAGGTAGAATGCACAAGCCAGGGATCGGCCCGGT-CCC-TCTGCATGCTGCCGAT
65 ACCGGCCAAAGAGGCAGAATGCACAAGCCAGGGATCAACCCGGTCCCCTTCTACATGCTGCCGAT
* * ** *
21795254 CTTGCTG-CTGTTCCTGTTGCTGCAACCCTC-AGTCCGGTCT-GA
130 CTTGCTGTCAG-TCCTGCTGCCACAACCCTCGA-TCCAG-CTGGA
*
21795296 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
21795324 TTAGACATGG
Statistics
Matches: 162, Mismatches: 29, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
168 4 0.02
169 65 0.40
170 6 0.04
171 86 0.53
172 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGGGCCCAA
CCGGCCAAAGAGGCAGAATGCACAAGCCAGGGATCAACCCGGTCCCCTTCTACATGCTGCCGATC
TTGCTGTCAGTCCTGCTGCCACAACCCTCGATCCAGCTGGA
Found at i:21795669 original size:867 final size:865
Alignment explanation
Indices: 21793472--21797102 Score: 3365
Period size: 867 Copynumber: 4.2 Consensus size: 865
21793462 GCCAGTCGGT
** ** * * * * * *
21793472 GAGGCAGAATGTGCAAGCCGGGGATCGGTCCGGTCCCCCCTGCGTGCTACCGATCCTACTACTAG
1 GAGGCAGAATGCACAAGCC-GGGATCGACCCGATCCCCTCTGCATGCTGCCGATCCTGCTGCT-G
* * * *
21793537 TCTTGCTACCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
64 TC-TGCTGCTGCAACCCTC-GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * * *** *
21793602 ATGGAATGGACTCTGTATGCCTAAGCCAACACATGAAACGAGCGTGCG-GTGCTCAATTGG-TCA
127 ATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGTGCGCTCAGCAGGCTCG
* * * * * *
21793665 GAGAGGCAGAATGCA-AAAGCTGGGGATCGGCTC-GATCCCCCTTGCATGCTGTCGATTCTGTTG
192 GAGAGGCAGAATGCACAAA-CTGGGGATCAGCCCAG-TCCCCCCTACATGCTGTCGATCCTGCTG
* * *
21793728 CCGTAACCCTC-ATTCCGGTCCAATCTTAGACT-AGGACTGAACT-TCGTATGCCTAAGTCAACC
255 CCGCAACCCTCGA-TCCGATCCAATCTTAGACTGA-GAATGAACTCT-GTATGCCTAAGTCAACC
* * *
21793790 CACGAAATGAGCGTTCAGGCGCTGAGCCGATCGGAGAGGCATAATACGCAAGCCAGGGATCGACC
317 CACGAAATGAGCGTTCAGGCGCTGAGCAGGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGACC
* * * * * * * *
21793855 CGATCCCCCTCTGCGTACTGCCGGTCCTGCTACCACAACTCTCGATCCGGCTGGGACTTAGACAT
382 CAATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCAATCCGGTTGGGGCTTAGACAT
* * *** *
21793920 GGAATGAACTCCCTATGCTTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTTGGCCGGAG
447 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAG
* * ** *
21793985 AGGCAGAATGCCCAAGTCGAGGATCGACCTGGTCACCCCTGCGTGCTGCCGATCCTATTGTCGCA
512 AGGCAGAATGTCCAAGCCGAGGATCGACCTGGTCACCCCTGCGTGCTGCCGATCCTGCTGCCGCA
* *
21794050 ACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT-GAGGATGACCT
577 ACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAG-GGATGAACT
* * * * **
21794114 CCGTATACCTAAGTCAACCCACGAAAAGTGCATGCGGGCGCTCAGCCGGTTGGAGAGGCATAATG
641 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCATAATG
* * * * * ** * * ** *
21794179 CATAATCCGGGGATCAGCCTGATCCCCCTCTTCTTGCTGTTAATCCTACAACCGGTCCTGCT---
706 CACAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCTTGCTGCCAGTCCTGCTGCC
* *
21794241 ---ACCCTCGGT-CTGACTGGGGCTTAGACATGGAATGAACTCCATATTCCTAAGCCAACCCACG
771 ACAACCCTCGGTCCAG-CTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACG
* ** *
21794302 AAATAAGCGTGTAGGCGCTCAGCCTGTCAGA
835 AAACAAGCGTGCGGGCGCTCAGCCGGTCAGA
* * * * * * * *
21794333 GAGGCAGAATACGCAAGCTGAGGATCGACCTGATCCCC-C-CCATTGTGCTGTCGATCCTACTGT
1 GAGGCAGAATGCACAAGCCG-GGATCGACCCGATCCCCTCTGCA---TGCTGCCGATCCTGCTGC
* *
21794396 TGGTTCTGCTG-TCGCAACCCTCGATCCTGTCCGATCTTAGACTGGAAATGAACT-CGTATGCTT
62 T-G-TCTGCTGCT-GCAACCCTCG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
21794459 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAGTC-G
123 AGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGTGCGCTCAG-CAG
* * ** * * ** * * * *
21794523 GCT-GGAGAGGCAAAATGCGCATGCTAGGGACCAATCCAGTCCCCCTTACGTGCTATCGATCCTA
187 GCTCGGAGAGGCAGAATGCACAAACTGGGGATCAGCCCAGTCCCCCCTACATGCTGTCGATCCTG
* * * * * *
21794587 CTGCTGCAACCCTCGGTTCGATCCGATCTTAGACAGGGAATGAACTCTGTATGCCTAAGTCAACC
252 CTGCCGCAACCCTCGATCCGATCCAATCTTAGACTGAGAATGAACTCTGTATGCCTAAGTCAACC
* * * * ***
21794652 CACGAAATGAGCGTTCAGGCACTGAGCCGGTCGGAGAGGCATAATGCGTAAGCCGGGGATCGGTT
317 CACGAAATGAGCGTTCAGGCGCTGAGCAGGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGACC
* * * * *
21794717 CAATCCCTCTCTGTGTGCTGCCAGTCCCGCTGCCACAACTCTTAATCCGGTTGGGGCTTAGACAT
382 CAATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCAATCCGGTTGGGGCTTAGACAT
* * * * * * *
21794782 CGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGAGTGTGCGGGCGCTCAGCCTACCAGAG
447 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAG
* * * *
21794847 AGGTAGAATGTCCAAGCCGAGGATCGGCCTGGTCACCCCTACGTGCTACCGATCCTGCTGCCGCA
512 AGGCAGAATGTCCAAGCCGAGGATCGACCTGGTCACCCCTGCGTGCTGCCGATCCTGCTGCCGCA
*
21794912 ACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTC
577 ACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTC
* * * * *
21794977 CGTACGCCTAAGTCAAGCCACGAAATGAGCGTGTGGGTGCTCAGCCGGCCGGAGAGGCATAATGC
642 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCATAATGC
* * * * *
21795042 ACAAGCCAGGGATCAACCCGGTCCCCTTCTACGTGCTGTCGATCTTGCTGTCAGTCCTGCTGCCA
707 ACAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCTTGCTGCCAGTCCTGCTGCCA
* * * *
21795107 CAACCCTCGATCCAGCTGGGGCTTAGACATCGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
772 CAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAA
* * * *
21795172 ACAAGCGTGCGGGGGCCCAACCGGTCAAA
837 ACAAGCGTGCGGGCGCTCAGCCGGTCAGA
* * * *
21795201 GAGGTAGAATGCACAAGCCAGGGATCGGCCCGGT-CCCTCTGCATGCTGCCGATCTTGCTGCTGT
1 GAGGCAGAATGCACAAGCC-GGGATCGACCCGATCCCCTCTGCATGCTGCCGATCCTGCTGCTG-
* *
21795265 TCCTGTTGCTGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
64 T-CTGCTGCTGCAACCCTC-GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* *
21795330 ATGGAATGAACTTTGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGTGCGCTCAGCAGGCT-G
127 ATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGTGCGCTCAGCAGGCTCG
* * * *
21795394 GAGAGGTAGAATGCACAAACTGGGGATTAGCCCGGTCCCCCCTGCATGCTGTCGATCCTGCTGCC
192 GAGAGGCAGAATGCACAAACTGGGGATCAGCCCAGTCCCCCCTACATGCTGTCGATCCTGCTGCC
* ** * *
21795459 GCAACCCTCGATCCGATCCAATCTTAGACTGAGAATGAACTTTGTATAACTAAGTCAACACATGA
257 GCAACCCTCGATCCGATCCAATCTTAGACTGAGAATGAACTCTGTATGCCTAAGTCAACCCACGA
* *
21795524 AACGAGCGTAT-GGGCGCTGAGCAGGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCAAT
322 AATGAGCGT-TCAGGCGCTGAGCAGGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCAAT
** **
21795588 CCCCCTCTGCGTGCTATCGGTCCCGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAA
386 CCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCAATCCGGTTGGGGCTTAGACATGGAA
* * * * * *
21795653 TGAACT-CCTAATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAACCGGCTGGAGAGG
451 TGAACTCCCT-ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGG
* * * * ** *
21795717 CAGAATG-CGTAAGCC-AGGGATCGACCCGAT--CCCCTCGCGTGCTGTCGATTTTGCTGTCGCA
515 CAGAATGTC-CAAGCCGA-GGATCGACCTGGTCACCCCT-GCGTGCTGCCGATCCTGCTGCCGCA
* * * * *
21795778 ACCCTTGGTTCGGTTTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTC
577 ACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTC
* * * * * *
21795843 CGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAAAGGCAGAATGC
642 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCATAATGC
* * * * *
21795908 GCAAGCTGGGGATCGGCCTGAT--CCC-C--C-T-CTG-C-A---TGCTGCCAGTCCCGCTGCCA
707 ACAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCTTGCTGCCAGTCCTGCTGCCA
* * *
21795961 CAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTAGGCCTAAGCCAAGCCACGAA
772 CAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAA
** * ** *
21796026 ACGGGCGTGCGGGTGCTCAGCCGACCGGA
837 ACAAGCGTGCGGGCGCTCAGCCGGTCAGA
* * * * * * *
21796055 GAGGCAAAATGCGCAAGTCGGGGATTGACCCGATCCCCCCTACGTGCTGCCGA---T-C--CTG-
1 GAGGCAGAATGCACAAG-CCGGGATCGACCCGATCCCCTCTGCATGCTGCCGATCCTGCTGCTGT
* * *
21796113 CTG-T-C-GCAACCCTCGATCCGATCCGATCTTACACTGGGAATGAGCTCCGTATGCTTAGAC-T
65 CTGCTGCTGCAACCCTCG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT
* *
21796174 GGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAAGCACTTAGTCGGC-CGG
129 -GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGC--G----T-G-C-GCTC--
* ** * * * * *
21796238 AG-AGGTCGGTCGAAGAGGCAGAATGTGCAAGCCGAGGATC-GACTCAGT-CCCCCTACGTGCTG
182 AGCAGG-C--TCGGAGAGGCAGAATGCACAAACTGGGGATCAG-CCCAGTCCCCCCTACATGCTG
* * * ** *
21796300 TCGATCCTACTGCTGGTTCTACTGCCACAACCATCGGTCCGGTCTGATCTTAGACTGGGAATGAA
243 TCGAT-C--CTGCT-G--C--C-G---CAACCCTCGATCCGATCCAATCTTAGACTGAGAATGAA
* * * *
21796365 CTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTCCAGACGCTGAGCAGGTCGGAGAGTCATAA
296 CTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTTCAGGCGCTGAGCAGGTCGGAGAGGCATAA
* * * * *
21796430 TGCGCAAGCC-GAGAATCAACCCAATCCCCCTCTGCATGCTGCCGGTCTCACTGCCACAACCCTC
361 TGCGCAAGCCAG-GGATCGACCCAATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTC
* * *
21796494 AGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGTA-CA
425 AATCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-AGCG
* * ** * *
21796558 TGCGGGCGCTCAACCGATCGGAAAGGCAGAATGTGTAAGTCGAGGATCGA-CTCGGTCCCCCCTG
489 TGCGGGCGCTCAACCGACCGGAGAGGCAGAATGTCCAAGCCGAGGATCGACCT-GGTCACCCCTG
* * * * **
21796622 CGTGCTGTCGATCTTGCTACCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCA
553 CGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTG
* * * * **
21796687 TATGCTTAGACTGGGGATGAACTTCGTATGCCTTAGTCAACCCACAAAACGAGCGTATGGGCGCT
618 TATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
** * * *
21796752 CAGTCGGTCGGAAAGGCTGGTCGGAGAGGCATAATGCGTAAGTCGAGGATCAGCTCGATCCCCCT
683 CAG-C---C-----GGC----CGGAGAGGCATAATGCACAAGCCGGGGATCAGCCCGATCCCCCT
* * * * * * * * *
21796817 CTACGTGCTATCGATCTCGTTG-CTGATCCTACTACCACAACCCTCGGTCCGGTTGGGGCTTAGG
735 CTACGTGCTGTCGATCTTGCTGCCAG-TCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGA
* *
21796881 CATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-CT
799 CATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGTC-
*
21796945 GGA
863 AGA
* * * ** **
21796948 GAGGTAGAAT-CTACAAGCCGGGTATC-AGCTCGATCCCCTCCTGCGTGCTATCGATCCTGCTAT
1 GAGGCAGAATGC-ACAAGCCGGG-ATCGA-CCCGATCCCCT-CTGCATGCTGCCGATCCTGCTGC
* * *
21797011 TGTCTTGCTACTGCAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
62 TGTC-TGCTGCTGCAACCCTC-GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * *
21797076 ACATGCAATGAACTCTATATGTCTAAG
125 ACATGGAATGAACTCTGTATGCCTAAG
21797103 ACGGGGATCA
Statistics
Matches: 2250, Mismatches: 399, Indels: 198
0.79 0.14 0.07
Matches are distributed among these distances:
842 2 0.00
843 90 0.04
844 1 0.00
845 2 0.00
846 3 0.00
849 4 0.00
850 1 0.00
851 3 0.00
852 6 0.00
853 3 0.00
854 122 0.05
855 35 0.02
856 26 0.01
857 1 0.00
858 6 0.00
859 5 0.00
860 3 0.00
861 89 0.04
862 534 0.24
863 9 0.00
864 3 0.00
865 8 0.00
866 215 0.10
867 592 0.26
868 220 0.10
869 11 0.00
872 1 0.00
877 2 0.00
881 29 0.01
883 3 0.00
884 1 0.00
886 1 0.00
887 1 0.00
888 2 0.00
889 1 0.00
890 1 0.00
892 9 0.00
893 116 0.05
894 11 0.00
897 1 0.00
898 1 0.00
900 2 0.00
901 1 0.00
902 2 0.00
903 1 0.00
904 1 0.00
905 68 0.03
906 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (865 bp):
GAGGCAGAATGCACAAGCCGGGATCGACCCGATCCCCTCTGCATGCTGCCGATCCTGCTGCTGTC
TGCTGCTGCAACCCTCGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGG
AATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGTGCGCTCAGCAGGCTCGGAGA
GGCAGAATGCACAAACTGGGGATCAGCCCAGTCCCCCCTACATGCTGTCGATCCTGCTGCCGCAA
CCCTCGATCCGATCCAATCTTAGACTGAGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATG
AGCGTTCAGGCGCTGAGCAGGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCAATCCCCC
TCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCAATCCGGTTGGGGCTTAGACATGGAATGAAC
TCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAAT
GTCCAAGCCGAGGATCGACCTGGTCACCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGT
CCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCT
AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCATAATGCACAAGCCGG
GGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCTTGCTGCCAGTCCTGCTGCCACAACCCTCG
GTCCAGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTG
CGGGCGCTCAGCCGGTCAGA
Found at i:21795833 original size:26 final size:26
Alignment explanation
Indices: 21795797--21795849 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21795787 TCGGTTTGAT
*
21795797 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
21795823 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21795849 C
1 C
21795850 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21796169 original size:26 final size:26
Alignment explanation
Indices: 21796140--21796192 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21796130 CCGATCCGAT
*
21796140 CTTACACTGGGAATGAGCTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* * *
21796166 CTTAGACTGGGGATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
21796192 C
1 C
21796193 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:21796716 original size:26 final size:27
Alignment explanation
Indices: 21796665--21796722 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
21796655 CCAGTCTGAT
21796665 CTTAGACTGGGAATGAACTCCATATG-
1 CTTAGACTGGGAATGAACTCCATATGC
* * *
21796691 CTTAGACTGGGGATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTCCATATGC
21796718 CTTAG
1 CTTAG
21796723 TCAACCCACA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCATATGC
Found at i:21797696 original size:26 final size:26
Alignment explanation
Indices: 21797660--21797712 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21797650 CTGGTTCGAT
*
21797660 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
21797686 CTTAGATTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
21797712 C
1 C
21797713 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:21798012 original size:170 final size:170
Alignment explanation
Indices: 21797701--21798052 Score: 367
Period size: 170 Copynumber: 2.1 Consensus size: 170
21797691 ATTGGGGATA
* * * * *
21797701 AACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGGCACTCAGCCGACCGGATAGGCAT
1 AACTTCGTATGCCTAAGCCAACCAATGAAACGAACGTGCGGGCACTCAGCCGACCGGAGAGGCAG
* * * *
21797766 AATGCACAAGTCAGGGATCAACCCGATCCCCCTCTGCACGCTGTCGATTAGTTGTCGGTCCTGCT
66 AAGGCACAAGTCAGGGATCAACCCGATCCCCCTCTGCACGCTGCCAATTAGCTGTCGGTCCTGCT
* *
21797831 ACCATAACCCTC-AGTCCGG-CTGGAGCTTAGAC-ATGGAATG
131 ACCACAACCCTCGA-TCCGGTCT-CAGCTTAGACTA-GGAATG
* ** * *
21797871 AACTTCGTATGCCTAAGCCAACCAATGAAACGAACGTGCGGGCGCTCAGCCGGTCGTAGAGGTAG
1 AACTTCGTATGCCTAAGCCAACCAATGAAACGAACGTGCGGGCACTCAGCCGACCGGAGAGGCAG
* * ** *
21797936 AAGGCACAAGTCAGGGATCGACCCGGT-CCCCTCTGCGTG-TGGCCAATCCT-GCTG-CTGGTCT
66 AAGGCACAAGTCAGGGATCAACCCGATCCCCCTCTGCACGCT-GCCAAT--TAGCTGTC-GGTCC
* * *
21797997 TGCTGCCGCAACCCTCGATCCGGTCTCATCTTAGACTAGGAATG
127 TGCTACCACAACCCTCGATCCGGTCTCAGCTTAGACTAGGAATG
*
21798041 AACTTTGTATGC
1 AACTTCGTATGC
21798053 TTAGACATGG
Statistics
Matches: 150, Mismatches: 25, Indels: 14
0.79 0.13 0.07
Matches are distributed among these distances:
168 1 0.01
169 15 0.10
170 129 0.86
171 5 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (170 bp):
AACTTCGTATGCCTAAGCCAACCAATGAAACGAACGTGCGGGCACTCAGCCGACCGGAGAGGCAG
AAGGCACAAGTCAGGGATCAACCCGATCCCCCTCTGCACGCTGCCAATTAGCTGTCGGTCCTGCT
ACCACAACCCTCGATCCGGTCTCAGCTTAGACTAGGAATG
Found at i:21798419 original size:26 final size:26
Alignment explanation
Indices: 21798368--21798420 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21798358 TCGGTTCGAT
*
21798368 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
21798394 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
21798420 C
1 C
21798421 CTAAATCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:21798601 original size:26 final size:25
Alignment explanation
Indices: 21798563--21798614 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
21798553 CCGGTCTAAT
21798563 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTC-GTATG
21798589 CTTAGACAT-GGAATGAACTCGTATG
1 CTTAGAC-TGGGAATGAACTCGTATG
21798614 C
1 C
21798615 CTAAGCTAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 6 0.24
26 18 0.72
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:21799649 original size:26 final size:27
Alignment explanation
Indices: 21799601--21799655 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
21799591 GTCTGATCTT
*
21799601 AGACTGAGAATGAACTCTATATG-CTA
1 AGACTGAGAATGAACTCCATATGCCTA
* * *
21799627 AGACTGGGGATGAACTCCGTATGCCTA
1 AGACTGAGAATGAACTCCATATGCCTA
21799654 AG
1 AG
21799656 CCAACTCATG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (27 bp):
AGACTGAGAATGAACTCCATATGCCTA
Found at i:21800360 original size:26 final size:26
Alignment explanation
Indices: 21800320--21800372 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21800310 GGCTCAAAAT
21800320 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
*
21800346 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCATATG
21800372 C
1 C
21800373 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:21800965 original size:317 final size:316
Alignment explanation
Indices: 21800345--21801158 Score: 1024
Period size: 317 Copynumber: 2.6 Consensus size: 316
21800335 AACTCCATAT
* * * * *
21800345 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGTGTGCCGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* ** * * * * *
21800410 TGGGTCAAAGAGACAGAATGCGCAAGCCGTGGATCGACTCGGTCCCCCCCTGTGTACTGTCGATC
66 TCGGTCGGAGAGGCAGAATGCGCAAGCCG-GGATCGACCCGAT-CCCCCCTGCGTGCTGTCGATC
* ** *
21800475 TTGCTGCCATAACCCTC-GTTCTGGTCCAATCTTAGAGTGGGAATGAACTCTGTATGCATAAGTC
129 CTGCTGCCGCAACCCTCGGTTC-GGTCCAATCTTAGACTGGGAATGAACTCTGTATGCATAAGTC
* * * * *
21800539 AACCCATGAAATGAGCATGTAGGCGCTGAGCTGATCGAAGAGGCATAATGCGCAAGCCAAGGATC
193 AACCCATGAAACGAGCATGCAGACGCTGAGCAGATCGAAAAGGCATAATGCGCAAGCCAAGGATC
* **
21800604 GACCCGATCCCCCTCTGCGTGCTGTCAGTCTCACTGCCACAACCCTCAGTCCGGTTGGG
258 GACCCGATCCCCCTCTGCGTGCTGTCAGTCCCACTGCCACAACCCTCAGTCCGACTGGG
* *
21800663 GCTTAGACATGGACTGAACTCCCTATGTCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* * *
21800728 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGTATCGACCCGATCCCCCCTGCGTGCTATCGATCC
66 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGG-ATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* **
21800793 TGCTACCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAA
130 TGCTGCCGCAACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAA
* *
21800858 CCCATGAAACGAGCATGCAGATGCTGAGTCAG-TCGAAAAGGCATAATGCGCAAGCCGAGGATC-
195 CCCATGAAACGAGCATGCAGACGCTGAG-CAGATCGAAAAGGCATAATGCGCAAGCCAAGGATCG
* * * * * * * *
21800921 AGCTCGGTCCTCTTTTGTGTGCTG-CTAGTCCCACTGCTACAACCCTCGGTCCGACTGGG
259 A-CCCGATCCCCCTCTGCGTGCTGTC-AGTCCCACTGCCACAACCCTCAGTCCGACTGGG
* * *
21800980 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* * * * * **
21801045 TCGATCGGAGAGGTAAAATGCGTAAGCCGGGGATCGGCCCGATCGACCCTGCGTGCTGTCGATCC
66 TCGGTCGGAGAGGCAGAATGCGCAAGCC-GGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* * *
21801110 TGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTC
130 TGCTGCCGCAACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTC
21801159 CATATGCTTA
Statistics
Matches: 426, Mismatches: 64, Indels: 13
0.85 0.13 0.03
Matches are distributed among these distances:
316 2 0.00
317 325 0.76
318 99 0.23
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAAC
CCATGAAACGAGCATGCAGACGCTGAGCAGATCGAAAAGGCATAATGCGCAAGCCAAGGATCGAC
CCGATCCCCCTCTGCGTGCTGTCAGTCCCACTGCCACAACCCTCAGTCCGACTGGG
Found at i:21801165 original size:158 final size:158
Alignment explanation
Indices: 21800346--21801165 Score: 584
Period size: 159 Copynumber: 5.2 Consensus size: 158
21800336 ACTCCATATG
* * * ** * * *
21800346 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGTGTGCCGGTGCTCAG
1 CTTAGACTA-GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAA
* * * * * * * * * *
21800410 TGGGTCAAAGAGACAGAATGCGCAAGCCGTGGATCGACTCGGTCCCCCCCTGTGTACTGTCGATC
65 TCGATCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGAT-CCCCCCTGCGTGCTGTCGATC
* * * * *
21800475 TTGCTGCCATAACCCTCGTTCTGGTCCAAT
129 CTGCTGCCACAACCCTCGGTCCGGTCCGAT
* * ** * * * * * *
21800505 CTTAGAGTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAATGAGCATGTAGGCGCT-GAG
1 CTTAGACTAGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAAT
*
21800569 CTGATCGAAGAGGCATAATGCGCAAGCCAAGGATCGACCCGATCCCCCTCTGCGTGCTGTC-AGT
66 C-GATCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCC-CTGCGTGCTGTCGA-T
* * ** **
21800633 -CTCACTGCCACAACCCTCAGTCCGGTTGGGG
128 CCT-GCTGCCACAACCCTCGGTCCGGTCCGAT
* * * *
21800664 CTTAGAC-ATGGACTGAACTCCCTATGTC-TAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
1 CTTAGACTA-GGAATGAACTCCCTATG-CATAAGCCAACCCACGAAACGAGCATGCAGGCGCTCA
* * * * * *
21800727 ACCGGTCGGAGAGGCAGAATGCACAAGCCG-GGTATCGACCCGATCCCCCCTGCGTGCTATCGAT
64 ATCGATCGAAGAGGCATAATGCGCAAGCCGAGG-ATCGACCCGATCCCCCCTGCGTGCTGTCGAT
* * * *
21800791 CCTGCTACCGCAACCCTCGGTTCGGTCTGAT
128 CCTGCTGCCACAACCCTCGGTCCGGTCCGAT
* ** * * ** * *
21800822 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCATGCAGATGCTGAGT
1 CTTAGACTAGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAAT
* * * *** * *
21800887 C-AGTCGAAAAGGCATAATGCGCAAGCCGAGGATC-AGCTCGGTCCTCTTTTGTGTGCTG-CTAG
66 CGA-TCGAAGAGGCATAATGCGCAAGCCGAGGATCGA-CCCGATCC-CCCCTGCGTGCTGTCGA-
** * * * **
21800949 TCCCACTGCTACAACCCTCGGTCC-GACTGGGG
127 TCCTGCTGCCACAACCCTCGGTCCGGTC-CGAT
* * *
21800981 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAA
1 CTTAGACTA-GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAA
* * * * * * **
21801045 TCGATCGGAGAGGTAAAATGCGTAAGCCGGGGATCGGCCCGATCGACCCTGCGTGCTGTCGATCC
65 TCGATCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* * *
21801110 TGCTGCCGCAACCCTCGGTCCGATCCAAT
130 TGCTGCCACAACCCTCGGTCCGGTCCGAT
*
21801139 CTTAGACTAGGAATGAACTCCATATGC
1 CTTAGACTAGGAATGAACTCCCTATGC
21801166 TTAGACTAGG
Statistics
Matches: 495, Mismatches: 141, Indels: 51
0.72 0.21 0.07
Matches are distributed among these distances:
157 2 0.00
158 177 0.36
159 312 0.63
160 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAAT
CGATCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGGTCCGAT
Found at i:21801168 original size:26 final size:26
Alignment explanation
Indices: 21801139--21801191 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21801129 CCGATCCAAT
21801139 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
21801165 CTTAGACTAGGGATGAACTCCCTATG
1 CTTAGACTAGGAATGAACTCCATATG
21801191 C
1 C
21801192 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:21801344 original size:183 final size:184
Alignment explanation
Indices: 21800980--21801470 Score: 599
Period size: 183 Copynumber: 2.7 Consensus size: 184
21800970 TCCGACTGGG
* *
21800980 GCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCA
1 GCTTAGACTA-GGGATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCA
* ** * * * ** * * *
21801044 ATCGATCGGAGAGGTAAAATGCGTAAGCCGGGGATCGGCCCGATCGACCCTGCGTGCTGTCGATC
65 ACCGGCCGGAGAGGCAAAATGCGTAAGCTGGGGATCAGCCCGATCCCCCCTACGTGCTGCCAATC
* * *
21801109 CTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTCCATAT
130 CTACTGCCGCAACCCTCGATCCGATCCAATCTTAGACTAAGAATGAACTCCATAT
*
21801164 GCTTAGACTAGGGATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAA
1 GCTTAGACTAGGGATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
** * * * *
21801229 CCGGCCAAAGAGGCAGAATGCGCAAG-TGGGGATCAGCTCGGTCCCCCCTACGTGCTGCCAATCC
66 CCGGCCGGAGAGGCAAAATGCGTAAGCTGGGGATCAGCCCGATCCCCCCTACGTGCTGCCAATCC
* * *
21801293 TACTGTCGTAACCCTCGATCCGATCCGATCTTAGACTAAGAATGAACTCCATAT
131 TACTGCCGCAACCCTCGATCCGATCCAATCTTAGACTAAGAATGAACTCCATAT
* * * * * * * *
21801347 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGTTCAG
1 GCTTAGACTAGGGATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
* * * * *
21801412 CCAGCCGGAGAGGCATAATGCATAAGTTGAGGATCAGCCCGATCCCCCTCTACGTGCTG
66 CCGGCCGGAGAGGCAAAATGCGTAAGCTGGGGATCAGCCCGATCCCCC-CTACGTGCTG
21801471 TTGATCCCGT
Statistics
Matches: 260, Mismatches: 44, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
183 153 0.59
184 96 0.37
185 11 0.04
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.19
Consensus pattern (184 bp):
GCTTAGACTAGGGATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
CCGGCCGGAGAGGCAAAATGCGTAAGCTGGGGATCAGCCCGATCCCCCCTACGTGCTGCCAATCC
TACTGCCGCAACCCTCGATCCGATCCAATCTTAGACTAAGAATGAACTCCATAT
Found at i:21801706 original size:26 final size:26
Alignment explanation
Indices: 21801677--21801729 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21801667 CCGGTCTGAT
*
21801677 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
*
21801703 CTTAGACATGGAATAAACTTCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
21801729 C
1 C
21801730 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:21801829 original size:184 final size:184
Alignment explanation
Indices: 21801520--21801887 Score: 416
Period size: 184 Copynumber: 2.0 Consensus size: 184
21801510 CATCTAGGGT
* * ** * *
21801520 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCTTGTGGGGGCTCAGTC
1 TTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCACAGTC
* * ** * * *
21801585 GATCGGAGAGGCAGAATGTGCAAGCCTGGGATCAGCCCGATCCCCTCTATATACTATCGATCCTG
66 GACCAGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCTCCATATACTATCGATCCTC
* ** *
21801650 CTACCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
131 CTACCACAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCCATATGC
* *
21801704 TTAGACATGGAATAAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCACAGTC
1 TTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCACAGTC
* ** * * * * * *
21801769 GACCAGAGTGGCAGAATGCACAAGTGGGGGATC-GACCTGGT-CCCTCCCGTGTGCTATCGATCT
66 GACCAGAGAGGCAGAATGCACAAGCCGGGGATCAG-CCCGATCCCCT-CCATATACTATCGATCC
** * *
21801832 TCCTGTCGCAACCCTCGGTCCAATCTGATCTTAGACTGGGAGTGAACTCCATATGC
129 TCCTACCACAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCCATATGC
21801888 CTAAGTCAAC
Statistics
Matches: 150, Mismatches: 32, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
183 5 0.03
184 145 0.97
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.22
Consensus pattern (184 bp):
TTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCACAGTC
GACCAGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCTCCATATACTATCGATCCTC
CTACCACAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCCATATGC
Found at i:21802314 original size:355 final size:355
Alignment explanation
Indices: 21801671--21802315 Score: 884
Period size: 355 Copynumber: 1.8 Consensus size: 355
21801661 CTTGGTCCGG
* *
21801671 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTTCGTATGCCTAAGC
1 TCTGATATTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATAAACTTCGTATGCCTAAGC
* * * *
21801736 CAACCCATGAAACGAGCGTACGGGCGCACAGTCGACCAGAGTGGCAGAATGCACAAGTGGGGGAT
66 CAACCCATGAAACAAGCGTACGGGCGCACAGCCGACCAGAGAGGCAGAATGCACAAGTGGGGGAC
* * * *
21801801 CGACCTGGTCCCTCCCGTGTGCTATCGATCTTCCTGTCGCAACCCTCGGTCCAATCTGATCTTAG
131 CGACCTGATCCCTCCCGCGTGCTATCGATCCTCCTGTCGCAACCCTCAGTCCAATCTGATCTTAG
* * *
21801866 ACTGGGAGTGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTATGGGCACTCAGCCAGTC
196 ACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTATAGGCACTCAGCCAGTC
* *
21801931 GGAGAGGCAGAACGCACAGGCCGGGGATCGACCTGATCCCCACCTACGTGCTACCGATCCTACTG
261 GGAGAGGCAGAACGCACAAGCAGGGGATCGACCTGATCCCCACCTACGTGCTACCGATCCTACTG
21801996 TTGGTCCTGCTATCGCAAGCCTCGGTCTGA
326 TTGGTCCTGCTATCGCAAGCCTCGGTCTGA
*
21802026 TCTGATATTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTTCGTATGCCT-AGC
1 TCTGATATTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATAAACTTCGTATGCCTAAGC
* * * ** * *
21802090 CAACCCATGAAATAAGCGTACGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCT-GGGGA
66 CAACCCATGAAACAAGCGTACGGGCGCACAGCCGACCAGAGAGGCAGAATGCACAAG-TGGGGGA
* * * * * **
21802154 CCGGCCTGATCCC-CCCTTGCGTGCTGTCGATCCTGCTGTTGTAACCCTCAGTCCGGTCTGATCT
130 CCGACCTGATCCCTCCC--GCGTGCTATCGATCCTCCTGTCGCAACCCTCAGTCCAATCTGATCT
* * *
21802218 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGT-TCAGGCATTGAGCC
193 TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTAT-AGGCACTCAGCC
* * * * *
21802282 AGTCTGAGAGGTATAATGCGCAAGCAGGGGATCG
257 AGTCGGAGAGGCAGAACGCACAAGCAGGGGATCG
21802316 GCTCGGTCCC
Statistics
Matches: 248, Mismatches: 38, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
353 3 0.01
354 66 0.27
355 179 0.72
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.22
Consensus pattern (355 bp):
TCTGATATTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATAAACTTCGTATGCCTAAGC
CAACCCATGAAACAAGCGTACGGGCGCACAGCCGACCAGAGAGGCAGAATGCACAAGTGGGGGAC
CGACCTGATCCCTCCCGCGTGCTATCGATCCTCCTGTCGCAACCCTCAGTCCAATCTGATCTTAG
ACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTATAGGCACTCAGCCAGTC
GGAGAGGCAGAACGCACAAGCAGGGGATCGACCTGATCCCCACCTACGTGCTACCGATCCTACTG
TTGGTCCTGCTATCGCAAGCCTCGGTCTGA
Found at i:21802443 original size:159 final size:158
Alignment explanation
Indices: 21802057--21802459 Score: 401
Period size: 159 Copynumber: 2.5 Consensus size: 158
21802047 AACTCCATAT
* * * *
21802057 GCTTAGACATGGAATGAACTTCGTATGCCTAGCCAACCCATGAAATAAGCGTACGGGTGCTCAGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAGCCAACCCAAGAAATGAGCGTACAGGTGCTCAGC
* * *
21802122 CGGTCGGAGAGGCAGAATGCGCAAGCTGGGGACCGGCCTGATCCCCCCTTGCGTGCTGTCGATCC
66 CAGTCGGAGAGGCAGAATGCGCAAGCAGGGGACCGGCCTGATCCCCCCTTGCGTACTGTCGATCC
* *
21802187 TGCTGTTGTAACCCTCAGTCCGGTCTGA
131 TCCTGTTGCAACCCTCAGTCCGGTCTGA
* * * *** *
21802215 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACA-AAATGAGCGTTCAGGCATTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCT-AGCCAACCCA-AGAAATGAGCGTACAGGTGCTC
* * * * *
21802278 AGCCAGTCTGAGAGGTATAATGCGCAAGCAGGGGATCGG-CTCGGT-CCCCCTCTGCGTACTG-C
63 AGCCAGTCGGAGAGGCAGAATGCGCAAGCAGGGGACCGGCCT-GATCCCCCCT-TGCGTACTGTC
* *
21802340 -AT-GTCCTGTTGCCACAACCCTCTA-TCCGG-CTAGG
126 GATCCTCCTGTTG---CAACCCTC-AGTCCGGTCT-GA
* * * *
21802374 GCTTAGACATGGAATGAACTCCCTATGCCTAGGCCAACCCAAGAAATGGGCGTGCAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTA-GCCAACCCAAGAAATGAGCGTACAGGTGCTCAG
21802439 CCAGTCGGAGAGGCAGAATGC
65 CCAGTCGGAGAGGCAGAATGC
21802460 ATAAGTCAGG
Statistics
Matches: 196, Mismatches: 36, Indels: 25
0.76 0.14 0.10
Matches are distributed among these distances:
156 7 0.04
157 3 0.02
158 39 0.20
159 145 0.74
160 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAGCCAACCCAAGAAATGAGCGTACAGGTGCTCAGC
CAGTCGGAGAGGCAGAATGCGCAAGCAGGGGACCGGCCTGATCCCCCCTTGCGTACTGTCGATCC
TCCTGTTGCAACCCTCAGTCCGGTCTGA
Found at i:21802566 original size:26 final size:26
Alignment explanation
Indices: 21802530--21802582 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21802520 CCGGTCTGAT
21802530 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
21802556 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21802582 C
1 C
21802583 CTGAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21803934 original size:26 final size:26
Alignment explanation
Indices: 21803896--21803948 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21803886 GGTTCAAACT
*
21803896 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21803922 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21803948 C
1 C
21803949 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21804280 original size:26 final size:26
Alignment explanation
Indices: 21804239--21804291 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21804229 TCAGTTCGAT
* *
21804239 CTTAGACTAGAAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACACCATATG
**
21804265 CTTAGACTAGGGATGAACACCATATG
1 CTTAGACTAGAAATGAACACCATATG
21804291 C
1 C
21804292 CTAACTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACACCATATG
Found at i:21804954 original size:26 final size:26
Alignment explanation
Indices: 21804910--21804965 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
21804900 CTGATCCGAT
*
21804910 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
21804936 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATAAACTCCGTATG
21804962 CTTA
1 CTTA
21804966 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:21805413 original size:26 final size:26
Alignment explanation
Indices: 21805362--21805414 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21805352 GGCTCAAAAT
* *
21805362 CTTAGACTGGGATTGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21805388 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21805414 C
1 C
21805415 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21807603 original size:26 final size:26
Alignment explanation
Indices: 21807574--21807626 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21807564 CTTGTCCGAT
21807574 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
21807600 CTTATACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21807626 C
1 C
21807627 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21808855 original size:26 final size:26
Alignment explanation
Indices: 21808812--21808864 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21808802 GGCTCAAAAT
21808812 CTTAGACTGGAAAAGAACTCCGTATG
1 CTTAGACTGGAAAAGAACTCCGTATG
*
21808838 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAAAGAACTCCGTATG
21808864 C
1 C
21808865 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAAAGAACTCCGTATG
Found at i:21809139 original size:159 final size:158
Alignment explanation
Indices: 21808838--21809338 Score: 424
Period size: 159 Copynumber: 3.2 Consensus size: 158
21808828 ACTCCGTATG
* * * * *
21808838 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAACCCAACCCATGAAACGAGCGTACAGGCGCTCAG
* * * * * * ** *
21808902 CCGGTCGGAGAGGTAGAATGCGAAAG-CCGAGGATC-ACCCCGGTCCCCCCT-TGTGAGCTGTCA
65 CCGGTCGAAGAGGCAGAATGCGCAAGTCAG-GGATCGA-CCCGATCCCCCCTAAGT--GCTAACG
** * *
21808964 ATCTTGCTATCGCAACCCTCGATCCGGTCTGAT
126 ATCCCGCTACCACAACCCTCGATCCGGTCTGAT
* * ** * * * *
21808997 CTCAGACTGGGAATGGACTCCGTATGCATAAGTCAACCCATTAAATGAGCGTACGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAACCCAACCCATGAAACGAGCGTACAGGCGCTCAGC
* * * * *
21809062 CGGTTGAAGAGGCATAATGCGCAAGTCAGGGATCGGCCCGATCCCCCTCTGCA-TGCTATCGATC
66 CGGTCGAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCCC-CT-AAGTGCTAACGATC
* **
21809126 CCGCTGCCACAACCCTC-AGTCCGG-CTAGGG
129 CCGCTACCACAACCCTCGA-TCCGGTCT-GAT
* * * * *
21809156 CTTAAACAT-GGAATGAACTCCCTATGCCTAACCCAACCCATGAAACGGGCGTGCAGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAACCCAACCCATGAAACGAGCGTACAGGCGCTCAG
* * * *
21809220 CCGGTCGGAGAGGTAGAATGCGCAAGTCATGGATCGACCCGGTCCCCCCTAAGTGCTAACGATCC
65 CCGGTCGAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCCCCTAAGTGCTAACGATCC
* * * * *
21809285 TGCTACCGCAACCCTTGGTCCGGTCCGAT
130 CGCTACCACAACCCTCGATCCGGTCTGAT
21809314 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
21809339 CTTAGACTGG
Statistics
Matches: 270, Mismatches: 59, Indels: 27
0.76 0.17 0.08
Matches are distributed among these distances:
157 2 0.01
158 56 0.21
159 206 0.76
160 5 0.02
161 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAACCCAACCCATGAAACGAGCGTACAGGCGCTCAGC
CGGTCGAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCCCCTAAGTGCTAACGATCCC
GCTACCACAACCCTCGATCCGGTCTGAT
Found at i:21809341 original size:25 final size:25
Alignment explanation
Indices: 21809308--21809363 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
21809298 CTTGGTCCGG
21809308 TCCG-ATCTTAGACTGGGAATGAAC
1 TCCGTATCTTAGACTGGGAATGAAC
*
21809332 TCCGTATCTTAGACTGGGGATGAAC
1 TCCGTATCTTAGACTGGGAATGAAC
21809357 TCCGTAT
1 TCCGTAT
21809364 GCCTAAGTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 4 0.13
25 26 0.87
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (25 bp):
TCCGTATCTTAGACTGGGAATGAAC
Found at i:21809658 original size:342 final size:342
Alignment explanation
Indices: 21808995--21809794 Score: 939
Period size: 342 Copynumber: 2.3 Consensus size: 342
21808985 ATCCGGTCTG
* * * * * * * *
21808995 ATCTCAGACTGGGAATGGACTCCGTATGCATAAGTCAACCCATTAAATGAGCGTACGGGCGCTGA
1 ATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * *
21809060 GCCGGT-TGAAGAGGCATAATGCGCAAGTCAGGGATCGGCCC-GATCCCCCTCTGCATGCTATCG
66 GCCAGTCAG-AGAGGCATAATGCGCAAGCCGGGGATCAGCCCAG-TCCCCCTCTGCATGCTACCG
*
21809123 ATCCCGCTGCCACAACCCTCAGTCCGGCTAGGGCTTAAACATGGAATGAACTCCCTATGCCTAAC
129 ATCCCGCTGCCACAACCCTCAATCCGGCTAGGGCTTAAACATGGAATGAACTCCCTATGCCTAAC
* * * * * *
21809188 CCAACCCATGAAACGGGCGTGCAGGCGCTCAGCCGGTCGGAGAGGTAGAATGCGCAAGTCATGGA
194 CCAACCCATGAAACGGGCATCCAGGCACACAACCGGTCGGAGAGGCAGAATGCGCAAGTCATGGA
* * **
21809253 TCGACCCGGTCCCCCCTAAGTGCTAACGATCCTGCTACCGCAACCCTTGGTCCGGTCCGATCTTA
259 TCGACCCGGTCCCCCCTAAGTGCTAACAATCCTACTACCGCAACCCTCAGTCCGGTCCGATCTTA
21809318 GACTGGGAATGAACTCCGT
324 GACTGGGAATGAACTCCGT
*
21809337 ATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 ATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * *
21809402 ACCAGTCAGAGAGGCATAATGCGTAAGCCGGGGATCAGTCCAGTCCCCCTCTGCGTGCTACCGGT
66 GCCAGTCAGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCATGCTACCGAT
* * * * * *
21809467 CCCGCTGCCATAACCCTTAATCTGAG-TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
131 CCCGCTGCCACAACCCTCAATCCG-GCTAGGGCTTAAACATGGAATGAACTCCCTATGCCTAACC
* * * *
21809531 CAACCCATGAAATGGGCATCCGGGCACACAACCGGTTGGAGAGGCAGAATGCGTAAG-C-TGGGG
195 CAACCCATGAAACGGGCATCCAGGCACACAACCGGTCGGAGAGGCAGAATGCGCAAGTCAT--GG
* * ** ** * * *
21809594 ATTGACCCTGTCCCCCC--AGCATGCTGTCAATCCTACTGTCGTAACCCTCAGTCTGGTTCGATC
258 ATCGACCCGGTCCCCCCTAAG--TGCTAACAATCCTACTACCGCAACCCTCAGTCCGGTCCGATC
21809657 TTAGACTGGGAATGAACTCCGT
321 TTAGACTGGGAATGAACTCCGT
* * * *
21809679 ATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGACCATGCGGACGCTC
1 AT-CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTC
* * * * * *
21809744 AGCCAGCCATAAAGGCATAATGCGCAGGCTGGGGATCAGCCCGGTCCCCCT
65 AGCCAGTCAGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCT
21809795 TTTCGTCTTG
Statistics
Matches: 386, Mismatches: 64, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
340 3 0.01
341 1 0.00
342 280 0.73
343 102 0.26
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (342 bp):
ATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
GCCAGTCAGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCATGCTACCGAT
CCCGCTGCCACAACCCTCAATCCGGCTAGGGCTTAAACATGGAATGAACTCCCTATGCCTAACCC
AACCCATGAAACGGGCATCCAGGCACACAACCGGTCGGAGAGGCAGAATGCGCAAGTCATGGATC
GACCCGGTCCCCCCTAAGTGCTAACAATCCTACTACCGCAACCCTCAGTCCGGTCCGATCTTAGA
CTGGGAATGAACTCCGT
Found at i:21809692 original size:26 final size:26
Alignment explanation
Indices: 21809656--21809708 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21809646 CTGGTTCGAT
*
21809656 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21809682 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21809708 C
1 C
21809709 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21810511 original size:159 final size:157
Alignment explanation
Indices: 21810258--21810751 Score: 489
Period size: 159 Copynumber: 3.1 Consensus size: 157
21810248 GGTTACACAT
* * * * *
21810258 GGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATTGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCAC-AAAAGAGCGTGCGGGTGCTCAGCCGATCGAAG
*
21810323 AGGCAGAATGCGCAAGCTGGGGA-CTGACCCGGTCCCCCCCTGTGTGCTGTCGATCCTGCTGCCA
65 AGGCAGAATGCGCAAGCCGGGGATC-GACCCGGTCCCCCCCTGTGTGCTGTCGATCCTGCTG-CA
*
21810387 CAACCCTCGTTCCGGTCCGATCTTAGACTG
128 CAACCCTCGGTCCGGTCCGATCTTAGACTG
* * * * *
21810417 GGAATGAACTCCGTATGCCTAAGTCAACCTACAAAATGAGTGTGCGGGTTCTGAGCCGATCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAA-GAGCGTGCGGGTGCTCAGCCGATCGAAG
* ** * * * *
21810482 AGGCATAATGCGCAAGCCAAGGATCGACCCGATCCCCCTCTGTGTGCTGTGGGT-CTCGCTAGCA
65 AGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCCTGTGTGCTGTCGATCCT-GCT-GCA
* * *
21810546 CAACCCTCGGTCC-GACTGGGTCTTAGACAT-
128 CAACCCTCGGTCCGGTC-CGATCTTAGAC-TG
* * * * * **
21810576 GGAATGAACTCCCTATACCTAAACCAACCCATGAAACAG-GCGTGTGGGTGCTCAGCCGGCCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCA-CAAA-AGAGCGTGCGGGTGCTCAGCCGATC-GA
* * * * *
21810640 A-AGGCAGAATGCGTAAGCCGGGGATCGACCCAGT-CCCCCTTGCGTGCTGTCGATCCTACTGTC
63 AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCCTGTGTGCTGTCGATCCTGCTG-C
* * *
21810703 GCAACCCTCGGTCCGGTCTGATCATAGACTG
127 ACAACCCTCGGTCCGGTCCGATCTTAGACTG
*
21810734 GGAATGAACTTCGTATGC
1 GGAATGAACTCCGTATGC
21810752 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 54, Indels: 27
0.77 0.15 0.08
Matches are distributed among these distances:
157 2 0.01
158 61 0.23
159 194 0.72
160 10 0.04
161 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAGAGCGTGCGGGTGCTCAGCCGATCGAAGA
GGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCCTGTGTGCTGTCGATCCTGCTGCACAA
CCCTCGGTCCGGTCCGATCTTAGACTG
Found at i:21810766 original size:26 final size:26
Alignment explanation
Indices: 21810727--21810777 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21810717 GGTCTGATCA
*
21810727 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
21810753 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
21810778 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:21811485 original size:26 final size:26
Alignment explanation
Indices: 21811447--21811499 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21811437 GGCTCAAACT
21811447 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
21811473 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
21811499 C
1 C
21811500 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:21811840 original size:26 final size:26
Alignment explanation
Indices: 21811790--21811842 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21811780 CCAGTTCGAT
* *
21811790 CTTAGACTAGGAATGAATTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
21811816 CTTAGACTAGGGATGGACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
21811842 C
1 C
21811843 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:21812014 original size:26 final size:26
Alignment explanation
Indices: 21811985--21812037 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21811975 TCCGGTCTGA
*
21811985 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACACCGTATG
21812011 CTTAGACATGGAATGAACACCGTATG
1 CTTAGACATGGAATGAACACCGTATG
21812037 C
1 C
21812038 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACACCGTATG
Found at i:21812489 original size:158 final size:156
Alignment explanation
Indices: 21812011--21812491 Score: 477
Period size: 158 Copynumber: 3.0 Consensus size: 156
21812001 ACTCCGTATG
* *
21812011 CTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCACGAAA-GGAGCGTGCGGGCGCTCTG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGG-GCGTGCGGGCGCTCAG
* * *
21812075 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGACCGACCCAGTCCTCCCTCGCATGCTGTCGAT-
65 CCGGTCGGAGAGGCAAAATGCGCAAGCCG-GGATCGACCCAGTCCCCCCT-GCATGCTGTCGATC
** * *
21812139 CTACTGTCGCAACCCTTGGTCTGATCTGAT
128 CTACTACCGCAACCCTCGGTCCGATC-GAT
** * * ** * * *
21812169 CTTAGAC-TGGGAATGAACTTTGTATGCCTAAGTCAA-CCATGAAACAAGCGTTCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
** * * * *
21812232 CCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTCTACATGCTG-CTGGT
65 CCGGTCGGAGAGGCAAAATGCGCAAGCC-GGGATCGACCCAGTCCCCC-CTGCATGCTGTC-GAT
* * * * * **
21812296 CCCATTACCACAACCCTCGGTCCGGCTGGGG
127 CCTACTACCGCAACCCTCGGTCC-GATCGAT
* *
21812327 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
* * * *
21812392 CGGTCGGAGAGGCAAAATGCGTAAGCCTGGGATCTACCCGGTCCCCCCTGTATGCTGTCGATCCT
66 CGGTCGGAGAGGCAAAATGCGCAAGCC-GGGATCGACCCAGTCCCCCCTGCATGCTGTCGATCCT
* *
21812457 GCTACCGCAACCCTCGATCCGATTCGAT
130 ACTACCGCAACCCTCGGTCCGA-TCGAT
21812485 CTTAGAC
1 CTTAGAC
21812492 TGGGAAGGAG
Statistics
Matches: 251, Mismatches: 61, Indels: 22
0.75 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 70 0.28
158 116 0.46
159 64 0.25
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAAAATGCGCAAGCCGGGATCGACCCAGTCCCCCCTGCATGCTGTCGATCCTA
CTACCGCAACCCTCGGTCCGATCGAT
Found at i:21813772 original size:26 final size:26
Alignment explanation
Indices: 21813736--21813788 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21813726 CCAGTTTGAT
*
21813736 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
* *
21813762 CTTAGACTGGGGATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
21813788 C
1 C
21813789 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:21815007 original size:160 final size:157
Alignment explanation
Indices: 21814493--21815645 Score: 573
Period size: 159 Copynumber: 7.1 Consensus size: 157
21814483 GTTTAGACAC
* * * ** * *
21814493 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAATCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGACCGGAG
* ** *
21814558 AGGCAGAATGCGCAAGCTAGGGATCGGCCCGATCCCCCCTACATGCTAT--CGATCTTGTTGCCA
66 AGGCAGAATGCGCAAGC-AGGGATCGGCCCGAT-CCCCCT-CATGCTCTGCCGATCCCGCTGCCA
* * *
21814621 TAACCCTCAGTCTGGTCTAATCTTAGACTG
128 CAACCCTCGGTCTGGTCCAATCTTAGACTG
* * * **
21814651 GCAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAACCGACCTAAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGACCGGAG
* * * *
21814716 AGGCATAATGCGCAAGCAGAGTATCGGCCCGATCCCCCTC-TTCGTGCTGCTGATCCCGCTGCCA
66 AGGCAGAATGCGCAAGCAG-GGATCGGCCCGATCCCCCTCATGC-T-CTGCCGATCCCGCTGCCA
* * **** *
21814780 CAACCCTCGATCT-GACTGGGGCTTAGACTT
128 CAACCCTCGGTCTGGTC-CAATCTTAGACTG
* * **
21814810 GGAATGAACTCCTTATGCCTAAG-CTAACCCATGAAATGGGCGTGTTGGCGCTCAACCGACCGGA
1 GGAATGAACTCCGTATGCCTAAGTC-AACCCATGAAATGAGCGTGCGGGCGCTCAACCGACCGGA
* * *
21814874 GAGCCAGAATGCGCAAGTCAGGGATCGGCCCGATCCCTCCTGCATGCTCTGCCGATCCGGCTGTC
65 GAGGCAGAATGCGCAAG-CAGGGATCGGCCCGATCCC-CCT-CATGCTCTGCCGATCCCGCTGCC
*
21814939 GCAACCCTCGGTCTGGTCCAATCTTAGACTG
127 ACAACCCTCGGTCTGGTCCAATCTTAGACTG
* * * * * * *
21814970 GGAATGAACTTCGTATGCCTAAGTCAACTCGTGAAATGAGTGTGTGAGCACTCAATCGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAA----CC---G
* * * * *
21815035 AGGCCGGTCGGAGAGGCATAATGCGCAAGCCGCGGATCAGCCC-AGTCCCTCTCTATG-TGCTAC
59 A---C---CGGAGAGGCAGAATGCGCAAGCAG-GGATCGGCCCGA-TCCCCCTC-ATGCT-CTGC
* * * * ****
21815098 CGATACCGCTGTCGATCCTACAGCCACAAGCTTCAGTCCGG-CTGGGGCTTAGACAT-
114 CGAT--C-C---CG---CT---GCCACAACCCTCGGTCTGGTC-CAATCTTAGAC-TG
** * * * * * * * * ** *
21815154 GGAATGAACTCTATATGCCTAAGCCAACCAACGAAACGAGCGTACGGGCGCTTAGCTGGTCGAAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGACCGGAG
* * * * * *
21815219 AGGCAGAATGCGTAAATCAGGGATCGG-CCTATCCCCC-C-TACGTGCTGTCGATCCTGCTGCCA
66 AGGCAGAATGCG-CAAGCAGGGATCGGCCCGATCCCCCTCATGC-T-CTGCCGATCCCGCTGCCA
* *
21815281 CAACCCTCGGTCCGGTCCGATCTTAGACTG
128 CAACCCTCGGTCTGGTCCAATCTTAGACTG
* * * * * * *
21815311 GGAAAGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCAGGCACTGAGCCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGACCGGAG
* * * * * * * * *
21815376 AGGCATAATGCGTAAATC-GAGTATCAGCCTGGTCCCTCTC-TGCGTGCTGCC-AGTCCCGTTGC
66 AGGCAGAATGCG-CAAGCAG-GGATCGGCCCGATCCCCCTCATGC-T-CTGCCGA-TCCCGCTGC
* * ****
21815438 CACAACCCTCGATCT-GACTGGGGCTTAGACAT-
126 CACAACCCTCGGTCTGGTC-CAATCTTAGAC-TG
* * * * * * *
21815470 GGAATGAACTCCCTATGCCTAAGCCAACCCACT-AAACGGGCATGCGGGCGCTCAGCCGGCCGGA
1 GGAATGAACTCCGTATGCCTAAGTCAACCCA-TGAAATGAGCGTGCGGGCGCTCAACCGACCGGA
* * * * * * * * *
21815534 GAGGTAGAATGCTCTAGCCGAGGATCAGCCCGATCCCCC-C-TGCGTGCTACCAATCCTGCTGTC
65 GAGGCAGAATGCGCAAGCAG-GGATCGGCCCGATCCCCCTCATGC-T-CTGCCGATCCCGCTGCC
* * *
21815597 GCAACCCTCGGTCTGATCTAATCTTAGACTG
127 ACAACCCTCGGTCTGGTCCAATCTTAGACTG
*
21815628 GGAATGAACTCCATATGC
1 GGAATGAACTCCGTATGC
21815646 TTGACTGGGG
Statistics
Matches: 754, Mismatches: 180, Indels: 122
0.71 0.17 0.12
Matches are distributed among these distances:
155 2 0.00
156 4 0.01
157 106 0.14
158 150 0.20
159 229 0.30
160 88 0.12
161 5 0.01
162 2 0.00
163 1 0.00
164 2 0.00
166 1 0.00
167 4 0.01
169 9 0.01
170 8 0.01
171 24 0.03
172 19 0.03
173 32 0.04
174 1 0.00
175 1 0.00
177 1 0.00
178 1 0.00
180 1 0.00
181 2 0.00
183 1 0.00
184 59 0.08
185 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGACCGGAG
AGGCAGAATGCGCAAGCAGGGATCGGCCCGATCCCCCTCATGCTCTGCCGATCCCGCTGCCACAA
CCCTCGGTCTGGTCCAATCTTAGACTG
Found at i:21815659 original size:25 final size:25
Alignment explanation
Indices: 21815623--21815670 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
21815613 TCTAATCTTA
21815623 GACTGGGAATGAACTCCATATGCTT
1 GACTGGGAATGAACTCCATATGCTT
* *
21815648 GACTGGGGATGAACTCCGTATGC
1 GACTGGGAATGAACTCCATATGC
21815671 CTAAGTCAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (25 bp):
GACTGGGAATGAACTCCATATGCTT
Found at i:21816125 original size:26 final size:26
Alignment explanation
Indices: 21816074--21816126 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21816064 GGCTCAAAAT
**
21816074 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21816100 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21816126 C
1 C
21816127 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21816454 original size:159 final size:158
Alignment explanation
Indices: 21816099--21816481 Score: 353
Period size: 159 Copynumber: 2.4 Consensus size: 158
21816089 AACTCTGTAT
*
21816099 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
* * *
21816164 CCGATCGAAAAAGCAGAATGCACAAATCGAGGATCGACCCAGTCCCCCCTACGTGCTATCGACCC
66 CAGATCCAAAAAGCAGAATGCACAAACCGAGGATCGACCCAGTCCCCCCTACGTGCTATCGACCC
* *
21816229 TACTGCCGCAACCCTCGATCCGGTCTGA
131 TACAGCCACAACCCTCGATCCGGTCTGA
* ** ** * * * * *
21816257 TCTTAGA-ATGGGAATGAACTCTGTATGCAGAAGTCAACCCATGAAATGAGCGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCA
* * ** * * * *
21816321 GCAGA-CCAAAGAGGCATAATGTGCAAGCC-AGGGATCGACCCGGTCCCTCTCTACGTGCTGTCG
65 GCAGATCCAAA-AAGCAGAATGCACAAACCGA-GGATCGACCCAGTCCC-CCCTACGTGCTATCG
** * * *
21816384 GTCC-AGCAGCTACAACCCTCGGTCCGGT-TGGG
127 ACCCTA-CAGCCACAACCCTCGATCCGGTCT-GA
* * * * * * *
21816416 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCAGGAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
21816481 C
66 C
21816482 CGACTGGAGA
Statistics
Matches: 176, Mismatches: 42, Indels: 13
0.76 0.18 0.06
Matches are distributed among these distances:
157 7 0.04
158 83 0.47
159 84 0.48
160 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
CAGATCCAAAAAGCAGAATGCACAAACCGAGGATCGACCCAGTCCCCCCTACGTGCTATCGACCC
TACAGCCACAACCCTCGATCCGGTCTGA
Found at i:21816992 original size:26 final size:26
Alignment explanation
Indices: 21816941--21816993 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21816931 CGGGTTTGAT
*
21816941 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21816967 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21816993 C
1 C
21816994 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21817348 original size:26 final size:26
Alignment explanation
Indices: 21817296--21817348 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21817286 CCGGTCTGAT
*
21817296 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
21817322 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
21817348 C
1 C
21817349 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:21817387 original size:355 final size:351
Alignment explanation
Indices: 21816377--21817432 Score: 1190
Period size: 355 Copynumber: 2.9 Consensus size: 351
21816367 CTCTCTACGT
* * * *
21816377 GCTGTCGGTCCAGCAGCTACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTAT
* * * * *
21816442 ACCTAAGCCAACCCAGGAAACGGGCATGCGGGCGCTCAGCCGACTGGAGAGGTAAAATGCACAAG
66 GCCTAAGCCAACCCACGAAAC-GGCATGCGGGCGCTCAGCGGAC-GGAGAGGCAAAATGCGCAAG
* * *** ** * *
21816507 CTGGGGATCAGCTCGATCCCCCCTGCGTGCTGTTGATCCTGCTACCGCAACCC-CCAGTCTGGTC
129 CTGGGGATCGGCCCG-TCCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCGA-TCCGGTC
* * * * * *
21816571 CGATCTTAGACTGGGAATGAACTCCGTATGATTACACTGGGGATGAACTGCGTATGCCTATGTCA
192 TGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
* * * * *
21816636 ACCCACGAAATGAGTGTGCGGGTGCTCAGTGGATCGGAGAGGCCGACTGGAGAGGCATAATGCGC
257 ACCCATGAAATGAGTGTGC--GAG--CA----CTC----A-GCTGACCGGAGAGGCATAATGCGC
* * *
21816701 AAGCTGGGGATCAGCCC-AGTCCTCCTCTGCGTCCTATCGATCCC
309 AAGCT-GGGATCAGCCCGA-TCCCCCTCTGCATCCTATCAATCCC
* * *
21816745 GCTGCCGGTCCTGCTGCCACAACCCTCAGTCCGATTGGGGCTTAGACATGGAATCAACTCCCTAT
1 GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTAT
* * * * *
21816810 GCCTAAGCCAACCCACGAAACGGGAGTGC-GGCGCTCAACCGGCCGGAGATGCAGAATGCGCAAG
66 GCCTAAGCCAACCCACGAAACGGCA-TGCGGGCGCTC-AGCGGACGGAGAGGCAAAATGCGCAAG
* * * *
21816874 CTGGGGATTGGCCTGGTCCCCCCTGCGTGCTACCGATCCTG-TGTCGCAACCCTCGATCGGGTTT
129 CTGGGGATCGGCC-CGTCCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCGATCCGGTCT
*
21816938 GATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
193 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* * ** * * *
21817003 CCCATGAAATGAGCGTGCGGGTGCTCAGCTGACCGGAGAGGCATAATGTG-AAGCAGAGGATCAA
258 CCCATGAAATGAGTGTGCGAGCACTCAGCTGACCGGAGAGGCATAATGCGCAAGCTG-GGATCAG
* *
21817067 CCCGATCCCCCTCTGCATGCTGTCAATCCC
322 CCCGATCCCCCTCTGCATCCTATCAATCCC
* *
21817097 GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTAT
1 GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTAT
* *
21817162 GCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAGTCGGTCGGAGAGGCAAAATGCGCAAG
66 GCCTAAGCCAACCCACGAAACG-GCATGCGGGCGCTCAG-CGGACGGAGAGGCAAAATGCGCAAG
* * *
21817227 -TCGGGGATCGGCCCAGTCCCCTCATGGGTGCTACCGATCCTGCTGTCGGAACCCTCGATCCGGT
129 CT-GGGGATCGGCCC-GTCCCC-CCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCGATCCGGT
* * *
21817291 CTGATCTTAGACTGGGAATGAACTCTGCATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC
191 CTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGT
* * * *
21817355 CAACCCATGAAACGAGTGTGCGAGCACTCAGCTGGCCGGAGAGGCAGAATGCGCAAGTTGGGATC
255 CAACCCATGAAATGAGTGTGCGAGCACTCAGCTGACCGGAGAGGCATAATGCGCAAGCTGGGATC
21817420 AGCCCGATCCCCC
320 AGCCCGATCCCCC
21817433 CATACATGCT
Statistics
Matches: 588, Mismatches: 85, Indels: 43
0.82 0.12 0.06
Matches are distributed among these distances:
351 1 0.00
352 119 0.20
353 68 0.12
354 19 0.03
355 138 0.23
356 5 0.01
358 2 0.00
364 2 0.00
366 89 0.15
367 60 0.10
368 85 0.14
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (351 bp):
GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTAT
GCCTAAGCCAACCCACGAAACGGCATGCGGGCGCTCAGCGGACGGAGAGGCAAAATGCGCAAGCT
GGGGATCGGCCCGTCCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCGATCCGGTCTGAT
CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
ATGAAATGAGTGTGCGAGCACTCAGCTGACCGGAGAGGCATAATGCGCAAGCTGGGATCAGCCCG
ATCCCCCTCTGCATCCTATCAATCCC
Found at i:21817800 original size:158 final size:155
Alignment explanation
Indices: 21817322--21817818 Score: 437
Period size: 158 Copynumber: 3.1 Consensus size: 155
21817312 ACTCTGCATG
* * * *
21817322 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACC-CATGAAACGAGTGTGCGAGCACTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCACA-AAAAGGCGTGTG-G-GCGCTCA
* ** * * * * *
21817385 GCTGGCCGGAGAGGCAGAATGCGCAAGTTGGGATCAGCCCGATCCCCCCATACATGCTATCGATC
62 GCCGGCCGGAGAGGCAGAATGCGCAAGCAGGGATCAGCCCGGTCCCCTC-TGCGTGCTGTCGATC
** *
21817450 CTGCTGCCACAACCCTCGATCCAATCCAAT
126 CTGCTGCCACAACCCTCGATCCGGTCCGAT
* * * * *** * *
21817480 CTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCACAAAACGAGCATACAGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CCACAAAAAG-GCGTGTGGGCGCTCAGC
** * * * * * *
21817545 CTACCGGAGAGGCATAATGCGTAAGTCGGGGATCAGCCCGGTCCCCTCTGCGTGCTGCCGGTCCC
64 CGGCCGGAGAGGCAGAATGCGCAAG-CAGGGATCAGCCCGGTCCCCTCTGCGTGCTGTCGATCCT
* * * **
21817610 ACTGCCACAACCCTCGATCTGG-CTGGGG
128 GCTGCCACAACCCTCGATCCGGTC-CGAT
*
21817638 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAATCCACAAAATAGGCGTGTGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAA-CCACAAAA-AGGCGTGTGGGCGCTCAG
* * *
21817702 CGGGCCGGAGAGGCAGAATGGGCAAGCCAGGGATC-GACCCGGTCCCCTCTGCGTGCTGTTGATC
63 CCGGCCGGAGAGGCAGAATGCGCAAG-CAGGGATCAG-CCCGGTCCCCTCTGCGTGCTGTCGATC
* *
21817766 CTGCTGTCGCAACCCTCGATCCGGTCCGAT
126 CTGCTGCCACAACCCTCGATCCGGTCCGAT
*
21817796 CTTAGGCTGGGAATGAACTCCGT
1 CTTAGACTGGGAATGAACTCCGT
21817819 CTGCTTAAAC
Statistics
Matches: 260, Mismatches: 68, Indels: 22
0.74 0.19 0.06
Matches are distributed among these distances:
157 4 0.02
158 226 0.87
159 26 0.10
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (155 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCACAAAAAGGCGTGTGGGCGCTCAGCCG
GCCGGAGAGGCAGAATGCGCAAGCAGGGATCAGCCCGGTCCCCTCTGCGTGCTGTCGATCCTGCT
GCCACAACCCTCGATCCGGTCCGAT
Found at i:21821186 original size:26 final size:26
Alignment explanation
Indices: 21821156--21821209 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
21821146 GTTGACTTAG
21821156 GCATACGGAGTTCAACCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
* **
21821182 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
21821208 GC
1 GC
21821210 TTGAACCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCCAGTCTAA
Found at i:21822796 original size:170 final size:170
Alignment explanation
Indices: 21822471--21822875 Score: 379
Period size: 170 Copynumber: 2.4 Consensus size: 170
21822461 AAGGGTTGTG
* * *
21822471 GCAGCGGGATCGGTAGCACGCAGAGGGGGATCGAGCCAATCCCTGACTTGCACATTATGCCTCTC
1 GCAGCGGGATCGGCAGCACGCAGAGGGGGACCGAACCAATCCCTGACTTGCACATTATGCCTCTC
*** * * * * *
21822536 CGGTTGGCTAAGTGCCCGTATACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
66 CGACCGGCTAAGCGCCCGTACACTCATTTCATGGGTAGACTTAGGCATACGAAGTTCATTCCCAG
* * * * *
21822601 TGTAAGATCAGACTGGACAGAGGGTTGCAGTAGCAGGACC
131 TCTAAGACCAGACCGGACAGAGGGTTACAGCAGCAGGACC
* * * ** *
21822641 AGCAGCAGGATCGGCAGCACGCAG-GGGGGACCGAACCGAT-CCTCGGCTTGTGCATTCTGCCTC
1 -GCAGCGGGATCGGCAGCACGCAGAGGGGGACCGAACCAATCCCT-GACTTGCACATTATGCCTC
* * *
21822704 TCCGACCGGTTAAGCGCCCGTACGCTCATTTCATGGGTAGGCTTAGGCATACGAAGTTCATT-CC
64 TCCGACCGGCTAAGCGCCCGTACACTCATTTCATGGGTAGACTTAGGCATACGAAGTTCATTCCC
* * **
21822768 ATGTCTAAGCCCCA-ACC-GAGCTGAGGGTTATGGCAGCAGGACC
129 A-GTCTAAG-ACCAGACCGGA-CAGAGGGTTACAGCAGCAGGACC
* * * ** * * * *
21822811 GACAACGGGATCGGCAGCACGTAGAGGGGGACTGGGCTAATCCCCGGCTTGCGCATTATGCCTCT
1 G-CAGCGGGATCGGCAGCACGCAGAGGGGGACCGAACCAATCCCTGACTTGCACATTATGCCTCT
21822876 TCGGTCGGCC
Statistics
Matches: 187, Mismatches: 40, Indels: 14
0.78 0.17 0.06
Matches are distributed among these distances:
169 9 0.05
170 124 0.66
171 52 0.28
172 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.21
Consensus pattern (170 bp):
GCAGCGGGATCGGCAGCACGCAGAGGGGGACCGAACCAATCCCTGACTTGCACATTATGCCTCTC
CGACCGGCTAAGCGCCCGTACACTCATTTCATGGGTAGACTTAGGCATACGAAGTTCATTCCCAG
TCTAAGACCAGACCGGACAGAGGGTTACAGCAGCAGGACC
Found at i:21824619 original size:26 final size:26
Alignment explanation
Indices: 21824567--21824619 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21824557 GTTGGCTTAG
* *
21824567 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGACTTCATTCCATGTATAA
21824593 GCATACGGACTTCATTCTCA-GTATAA
1 GCATACGGACTTCATTC-CATGTATAA
21824619 G
1 G
21824620 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGACTTCATTCCATGTATAA
Found at i:21826287 original size:158 final size:158
Alignment explanation
Indices: 21825894--21826310 Score: 419
Period size: 158 Copynumber: 2.6 Consensus size: 158
21825884 GGACCAGGCT
* * * *
21825894 GATCCCTGGCTTACGTATTCTACCTCTCCGTCGGTTGAGCGCCTGCACGCCCGTTTCATGGGTTG
1 GATCCCCGGCTTACGCATTCTACCTCTCCGTTGGTTGAGCGCCTGCACGCTCGTTTCATGGGTTG
* * * * *
21825959 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAATTGAGGGCTGTGGCAACGGGA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCAGAATTGAGGGCTGTAGCAACAGGA
* * *
21826024 CCGACAGCACGTAGAGAGGGATCGGGTC
131 CCGACAGCACGCAGAGAGGGATCAGATC
* * * * * * * * * * * * **
21826052 GATCCTCGGCTTACGCATTATGCCTTTTCGGCTGGCTCAACGCCCGCATGCTCTTTTTGTGGGTT
1 GATCCCCGGCTTACGCATTCTACC-TCTCCGTTGGTTGAGCGCCTGCACGCTCGTTTCATGGGTT
* * * * *
21826117 GACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAG-ATTGAGGGTTGTAGTAGC
65 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG--CAGAATTGAGGGCTGTAGCAAC
* * * *
21826179 AGGATCGATAGCACGCAG-GGGGGATTAGATC
127 AGGACCGACAGCACGCAGAGAGGGATCAGATC
* * *
21826210 GATCCCCGGCTTGCGCATTCTACCTCCCCGATTGGTTGAGCGCCTGCACACTCGTTTCATGGGTT
1 GATCCCCGGCTTACGCATTCTACCTCTCCG-TTGGTTGAGCGCCTGCACGCTCGTTTCATGGGTT
21826275 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
21826311 TACAGAGTTC
Statistics
Matches: 199, Mismatches: 53, Indels: 13
0.75 0.20 0.05
Matches are distributed among these distances:
157 6 0.03
158 104 0.52
159 84 0.42
160 5 0.03
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.27
Consensus pattern (158 bp):
GATCCCCGGCTTACGCATTCTACCTCTCCGTTGGTTGAGCGCCTGCACGCTCGTTTCATGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCAGAATTGAGGGCTGTAGCAACAGGA
CCGACAGCACGCAGAGAGGGATCAGATC
Found at i:21826332 original size:26 final size:26
Alignment explanation
Indices: 21826282--21826334 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21826272 GTTGGCTTAG
* *
21826282 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
21826308 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
21826334 G
1 G
21826335 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:21826690 original size:26 final size:26
Alignment explanation
Indices: 21826661--21826713 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21826651 GTTGAGTTAG
* *
21826661 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
* *
21826687 GCATACAGAGTTTATTACCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
21826713 G
1 G
21826714 ATCGAATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCACCAGTCTAA
Found at i:21826989 original size:159 final size:159
Alignment explanation
Indices: 21826816--21827191 Score: 409
Period size: 159 Copynumber: 2.4 Consensus size: 159
21826806 TGGCTGAGTG
* * *
21826816 CCCGCACGCCCGTTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-C
1 CCCGAACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCCC-AGAC
* ** * * * * *
21826880 CAGACTGAGGGTTATGGCAGTGGGATCGACAGCACGTA-GAGGGGGACCGGGTCGATCCCCGATT
65 CAGACTAAGGGTTATGGCAGCAGGATCGACAGCACGCAGGA-GGGGACCGAGCCGATCCCCAACT
* * * *
21826944 TGCGCATTATGCCTCTTAAG-TCGGTTCAGCA
129 TACGCATTATACCTC-TAAGATCAGCTCAGCA
* * * * ** *
21826975 CCCGAATGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGAT
1 CCCGAACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATT-CCATGTCTAAGCCCAGAC
* * *
21827039 CGGACTAAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGAGGGGACCGAGCCGATCCCCAACTT
65 CAGACTAAGGGTTATGGCAGCAGGATCGACAGCACGCAGGAGGGGACCGAGCCGATCCCCAACTT
* ** * *
21827104 ACGCATTCTACCTCTCCGATCAGCTGAGCG
130 ACGCATTATACCTCTAAGATCAGCTCAGCA
*
21827134 CCCGGACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGC
1 CCCGAACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGC
21827192 ATATAGAGTT
Statistics
Matches: 176, Mismatches: 36, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
158 7 0.04
159 164 0.93
160 5 0.03
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
CCCGAACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCCCAGACC
AGACTAAGGGTTATGGCAGCAGGATCGACAGCACGCAGGAGGGGACCGAGCCGATCCCCAACTTA
CGCATTATACCTCTAAGATCAGCTCAGCA
Found at i:21827200 original size:26 final size:26
Alignment explanation
Indices: 21827161--21827216 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
21827151 TGGGTTGGCT
*
21827161 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACAGAGTTCATTCCCA-GTC
*
21827187 TAAGCATATAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
21827213 TAAG
1 TAAG
21827217 ATCAGATCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:21827398 original size:26 final size:26
Alignment explanation
Indices: 21827361--21827413 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21827351 GTTGACTTAG
21827361 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCCT-GTCTAA
*
21827387 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATTCCCTGTCTAA
21827413 G
1 G
21827414 ATCAAATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCTGTCTAA
Found at i:21828978 original size:26 final size:26
Alignment explanation
Indices: 21828929--21828979 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
21828919 TGGCTTAGGG
*
21828929 ATACGGAGTTCATTCCATGTCTAAGC
1 ATACGGAGTTCATTCCATGCCTAAGC
*
21828955 ATACGGAGTTGATTCCCA-GCCTAAG
1 ATACGGAGTTCATT-CCATGCCTAAG
21828980 ATCCTACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATGCCTAAGC
Found at i:21829333 original size:26 final size:26
Alignment explanation
Indices: 21829303--21829358 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
21829293 TGGGTTGACT
21829303 TAAGCATACAGAGTTCA-TCCCTAGTC
1 TAAGCATACAGAGTTCATTCCC-AGTC
21829329 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
21829355 TAAG
1 TAAG
21829359 ATCAGACTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:21831487 original size:26 final size:26
Alignment explanation
Indices: 21831457--21831509 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21831447 GTTGGCTTAG
21831457 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTGCCA-GTCTAA
*
21831483 GCATACGGAGTTCTTTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
21831509 G
1 G
21831510 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:21832227 original size:26 final size:26
Alignment explanation
Indices: 21832177--21832229 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21832167 GTTGACATAG
*
21832177 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* **
21832203 GCATGCAGAGTTCATTTCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
21832229 G
1 G
21832230 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:21832928 original size:26 final size:26
Alignment explanation
Indices: 21832899--21832951 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21832889 GTTGACTTAG
* * *
21832899 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
21832925 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
21832951 G
1 G
21832952 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:21833946 original size:159 final size:157
Alignment explanation
Indices: 21833625--21833968 Score: 352
Period size: 159 Copynumber: 2.2 Consensus size: 157
21833615 CCCAGTCTAA
* * ** * * * * * *
21833625 GCATATGGAGTTTATTCCCAGTCTAAGATCGAACCGGTCCGAGGGTTGCGGGAGAAGGATCGATA
1 GCATAGGGAGTTCATTCCCAGTCTAAGCCCCAGCCAGACCGAGGGTTGCGGCAGAAGGATCGACA
* * * * * * *
21833690 GCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTTTGCCTCTCCGGTAAGCTGAGCGCC
66 GCACGAAAGGGGGACCGAGCCAATCCCCGACTTGCGCATTATGCCTCTCCGATAAGCTCAGCGCC
21833755 CGCATGCCTGTTTCATGGGTTGGATTAG
131 CGCA-GCCTGTTTCATGGGTTGGATTAG
* **
21833783 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGATCGAC
1 GCATAGGGAGTTCATTCCCA-GTCTAAGCCCCAGCCAGACCGAGGGTTGCGGCAGAAGGATCGAC
* * * * *
21833847 AGCACGTAAAGGGGGACCGAGCCGATTCCCGACTTGCGCATTATGCCTCTTCGATAGGCTCAGTG
65 AGCACG-AAAGGGGGACCGAGCCAATCCCCGACTTGCGCATTATGCCTCTCCGATAAGCTCAGCG
** *
21833912 CCCGCA-CACTCGTTTTGTGGGTT-GACTTAT
129 CCCGCAGC-CT-GTTTCATGGGTTGGA-TTAG
*
21833942 GCATATGGAGTTCATTCCCAGTCTAAG
1 GCATAGGGAGTTCATTCCCAGTCTAAG
21833969 ATCGGATCGG
Statistics
Matches: 151, Mismatches: 29, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.03
158 57 0.38
159 87 0.58
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATAGGGAGTTCATTCCCAGTCTAAGCCCCAGCCAGACCGAGGGTTGCGGCAGAAGGATCGACA
GCACGAAAGGGGGACCGAGCCAATCCCCGACTTGCGCATTATGCCTCTCCGATAAGCTCAGCGCC
CGCAGCCTGTTTCATGGGTTGGATTAG
Found at i:21834138 original size:159 final size:153
Alignment explanation
Indices: 21833682--21834156 Score: 412
Period size: 159 Copynumber: 3.0 Consensus size: 153
21833672 GCGGGAGAAG
* * * * * *
21833682 GATCGATAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTTTGCCTCTCCGGTAAGC
1 GATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATGA-C
* * * *
21833747 TGAGCGCCCGCATGCCTGTTTCATGGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
65 TGAGCGCCCGCACGCC-GTTT-GTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-TCTAAGCC
* * * * **
21833812 CCAGCCAGACCGAGGGTTGTGGCAGCGG
127 CCAGTCGGACAG-GGGTTGTGGTAGCAA
* * * * * *
21833840 GATCGACAGCACGTAAAGGGGGACCGAGCCGATTCCCGACTTGCGCATTATGCCTCTTCGATAGG
1 GATCGACAGCACG-CAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGAT-GA
* * * * * * *
21833905 CTCAGTGCCCGCACACTCGTTTTGTGGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAG-
64 CTGAGCGCCCGCACGC-CG-TTTGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATTCTAAGC
** * *
21833969 ATCGGATCGGACTGGTGGTTGTGGTAGCAA
126 CCCAG-TCGGACAGG-GGTTGTGGTAGCAA
* * * *
21833999 GATCGACAGCACGCAGGGGGGGAACGGGTCGATCCCCAACTTGCGCATTCTGCCTCTCCGATCGA
1 GATCGACAGCACGCA-GGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGAT-GA
* * *
21834064 TTGAGCACCCGCACGCACGTTCTGTGGGTTGGCTTAGGCATACGGAGTTTATTCCAATTCTAAGC
64 CTGAGCGCCCGCACGC-CGTT-TGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-ATTCTAAGC
*
21834129 CCCAGTCGGATCAAGGGTTGTGGTAGCA
126 CCCAGTCGGA-CAGGGGTTGTGGTAGCA
21834157 GGACCGGCAG
Statistics
Matches: 247, Mismatches: 58, Indels: 23
0.75 0.18 0.07
Matches are distributed among these distances:
158 20 0.08
159 216 0.87
160 11 0.04
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (153 bp):
GATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATGACT
GAGCGCCCGCACGCCGTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATTCTAAGCCCCAG
TCGGACAGGGGTTGTGGTAGCAA
Found at i:21834309 original size:26 final size:26
Alignment explanation
Indices: 21834272--21834324 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21834262 GTTGACTTAG
*
21834272 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
21834298 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21834324 G
1 G
21834325 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21835433 original size:26 final size:26
Alignment explanation
Indices: 21835404--21835456 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21835394 GTTGGCTTAG
*
21835404 GCATACGGAGTTTA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
*
21835430 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21835456 G
1 G
21835457 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21835942 original size:26 final size:26
Alignment explanation
Indices: 21835912--21835964 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21835902 GTTGGCTTAG
*
21835912 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
**
21835938 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
21835964 G
1 G
21835965 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:21836139 original size:26 final size:26
Alignment explanation
Indices: 21836108--21836160 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
21836098 GTTGGCTTAG
21836108 GCATAC-GACGTTCATT-CCATGTCTAA
1 GCATACGGA-GTTCATTCCCA-GTCTAA
21836134 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21836160 G
1 G
21836161 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21836160 original size:196 final size:196
Alignment explanation
Indices: 21835817--21836331 Score: 649
Period size: 196 Copynumber: 2.6 Consensus size: 196
21835807 TAAAATTGAC
* * * * * *
21835817 AGCACGCAGGGGGGGA-CTAGGCCAATCCCCGGCATGCGCATTCTGCCTCTCCGACCGACTGAGC
1 AGCACGCA-GGGGGGATC-GGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGATCGACTGAGC
* *
21835881 GCCTGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATGG
64 GCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGG
* *
21835946 AGTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCAGGACCAGCAGCAAGATC
129 AGTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAACAGGACCAGCAGCAAGATC
21836011 GAT
194 GAT
* * *
21836014 AGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGACTGAGTGC
1 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGATCGACTGAGCGC
** * *
21836079 CCATACGCTAGTTTCATGGGTTGGCTTAGGCATAC-GACGTTCATTCCATGTCTAAGCATACGGA
66 CCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGA-GTTCATTCCATGTCTAAGCATACGGA
* * ** ** * * *
21836143 GTTCATTCCCAGTCTAAGATTGGACCGGGTCGAGGGTTGCGGTAACAGGACCAGTAGCAGGATTG
130 GTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAACAGGACCAGCAGCAAGATCG
*
21836208 GT
195 AT
* * * * * * *
21836210 AGCACGCAGGGGGGATCGAGCCGATCCCTGACTTCCACATTCTGCCTTTTCGATCGGCTGAGCGC
1 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGATCGACTGAGCGC
* *
21836275 CCGCACACTCGTTTCATGGGTTGGTTTAGTG-ATACGGAGTTCATTCCATGTCTAAGC
66 CCGCACACTCGTTTCATGGGTTGGCTTAG-GCATACAGAGTTCATTCCATGTCTAAGC
21836332 CACAGTCGGA
Statistics
Matches: 272, Mismatches: 42, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
195 2 0.01
196 259 0.95
197 11 0.04
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (196 bp):
AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGATCGACTGAGCGC
CCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAG
TTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAACAGGACCAGCAGCAAGATCGA
T
Found at i:21836517 original size:26 final size:26
Alignment explanation
Indices: 21836488--21836540 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21836478 GTTGACTTAG
*
21836488 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
21836514 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
21836540 G
1 G
21836541 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:21837257 original size:196 final size:196
Alignment explanation
Indices: 21836893--21837258 Score: 470
Period size: 196 Copynumber: 1.9 Consensus size: 196
21836883 ATTAGGATTG
* * * *
21836893 ACAGCACGAAGGGGGGACCGGTCCGGTCCCCAGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGT
1 ACAGCACGAAGGGGGGACCGGTCCGATCCCCAGCATGCGCATTCTGCCTCTCCGGTCAACTGAGT
* * * * * * *
21836958 GCCCGCACGCTCGTTTCATTGGTTGGCTTAGGCTTACGGAGTTCATTCCATGTCTAAGCATACAG
66 GCCCGCACGCTCATTTCATGGGCTGACTTAGGCATACGGACTTCATTCCATGTCTAAGCATACAA
* * *
21837023 AGTTCATTCCCAGTCTAAGATTGGACCGGATTGAGGGTTGCGGTAGTAGGACCAACAGCAGGGTC
131 AGTTCATTCCCAGTCTAAGATTGAACCAGATCGAGGGTTGCGGTAGTAGGACCAACAGCAGGGTC
21837088 A
196 A
* * * *
21837089 ACAGCACGTAGGGGGGATCGGGT-CGATCCCCGGCATGCGCATTCTGCCTCTCCGGTCAATTGAG
1 ACAGCACGAAGGGGGGA-CCGGTCCGATCCCCAGCATGCGCATTCTGCCTCTCCGGTCAACTGAG
**
21837153 CT-CCCGCACGCTCATTTTGTGGGCTGACTTAGGCATACGGACTTC-TTCCCCA-GTCTAAGCAT
65 -TGCCCGCACGCTCATTTCATGGGCTGACTTAGGCATACGGACTTCATT--CCATGTCTAAGCAT
* *
21837215 ACAAAGTTCATTCCCAGTGTAAGATTGAATCAGATCGAGGGTTG
127 ACAAAGTTCATTCCCAGTCTAAGATTGAACCAGATCGAGGGTTG
21837259 TGACAGCAGG
Statistics
Matches: 144, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
195 2 0.01
196 134 0.93
197 8 0.06
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (196 bp):
ACAGCACGAAGGGGGGACCGGTCCGATCCCCAGCATGCGCATTCTGCCTCTCCGGTCAACTGAGT
GCCCGCACGCTCATTTCATGGGCTGACTTAGGCATACGGACTTCATTCCATGTCTAAGCATACAA
AGTTCATTCCCAGTCTAAGATTGAACCAGATCGAGGGTTGCGGTAGTAGGACCAACAGCAGGGTC
A
Found at i:21838290 original size:26 final size:26
Alignment explanation
Indices: 21838260--21838312 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21838250 GTTGACTTAG
21838260 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
21838286 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
21838312 G
1 G
21838313 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:21838510 original size:157 final size:158
Alignment explanation
Indices: 21838286--21838618 Score: 436
Period size: 158 Copynumber: 2.1 Consensus size: 158
21838276 CCCAGTCTAA
* * * * * * *
21838286 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCGGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAACAGGATCGACA
* * * * ** *
21838351 GCACGTAGGGGGAAC-GGGCCGATCTCCGGCTCATGCATTCTGCCTCTT-CGATCGGTTGAGCGC
66 GCAAGTAGGGGGAACTGGGCCGATCCCCGGCTCACGCATTCTACCT-TTCCGATCGACTGAGCAC
21838414 CCGCACGCCCATTTCATGGGTTGGCTTAG
130 CCGCACGCCCATTTCATGGGTTGGCTTAG
* *
21838443 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAACAGGATCGACA
* * **
21838508 GCAAGTAGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTACCTTTCCGATCGACTGAGCACC
66 GCAAGTAGGGGGAACTGGGCCGATCCCCGGCTCACGCATTCTACCTTTCCGATCGACTGAGCACC
** *
21838573 CGCACGTTCGTTTCATGGGTTGGCTTAG
131 CGCACGCCCATTTCATGGGTTGGCTTAG
21838601 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
21838619 ATGCCTAAGC
Statistics
Matches: 151, Mismatches: 23, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
157 71 0.47
158 80 0.53
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAACAGGATCGACA
GCAAGTAGGGGGAACTGGGCCGATCCCCGGCTCACGCATTCTACCTTTCCGATCGACTGAGCACC
CGCACGCCCATTTCATGGGTTGGCTTAG
Found at i:21838679 original size:26 final size:26
Alignment explanation
Indices: 21838601--21838670 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
21838591 GTTGGCTTAG
21838601 GCATACGGAGTTCATTCCATGCCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
21838627 GCATACGGAGTTCATTCCATGCCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
*
21838653 GCATATGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
21838671 TAGTCTAAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:21838811 original size:210 final size:210
Alignment explanation
Indices: 21838443--21838838 Score: 542
Period size: 210 Copynumber: 1.9 Consensus size: 210
21838433 GTTGGCTTAG
* *
21838443 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAACAGGATCGACA
* * * * * * *
21838508 GCAAGTAGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTACCTTTCCGATCGACTGAGCACC
66 GCAAGCAGGAGGGACTGGGTCAATCCCCGACTTACGCATTCTACCTCTCCGACCGACTGAGCACC
** *
21838573 CGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACGGAGT
131 CGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACGGAGT
21838638 TCATTCCATGCCTAA
196 TCATTCCATGCCTAA
* * * * *
21838653 GCATATGGAGTTCATTCCTAGTCTAAGATTGGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAACAGGATCGACA
* * * * *
21838718 GCACGCAGGAGGGA-TCGGGTCAATCCCCGATTTACGCATTCTACCTCTCTGACCGGCTGAGCGC
66 GCAAGCAGGAGGGACT-GGGTCAATCCCCGACTTACGCATTCTACCTCTCCGACCGACTGAGCAC
* * * *
21838782 TCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCGTGTCTAAGC
130 CCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGC
21838839 CCTAGTCGAA
Statistics
Matches: 159, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
209 1 0.01
210 158 0.99
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (210 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAACAGGATCGACA
GCAAGCAGGAGGGACTGGGTCAATCCCCGACTTACGCATTCTACCTCTCCGACCGACTGAGCACC
CGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACGGAGT
TCATTCCATGCCTAA
Found at i:21839378 original size:159 final size:156
Alignment explanation
Indices: 21838983--21839494 Score: 433
Period size: 158 Copynumber: 3.2 Consensus size: 156
21838973 TCGTTTCGCA
* *
21838983 GGTTGACTTAGGCAT-CGGAGTTCATCCCCA-GTCTAAGATCGAACCGGACTGAGGGTTGCGACA
1 GGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAGATCGAACCGGACCGAGGGTTGCGACA
* * * * *
21839046 GCAAGATCGACAGCACGCA-AGGGGGATTGGG-CCGATCCCCTGCTTGCGCACTCTGCCTCTCTG
65 GCAGGATCGACAGCA--CATAGGGGGATCGGGTCAG-TCCCC-GCTTACGCATTCTGCCTCTCTG
* * * *
21839109 GCCGGCTGAGCACCCGCACGCCCGTTTCGTG
126 GCTGGCTGAGCACCCGAACGCTCATTTCGTG
* * * ** * * ** * * *
21839140 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCTAGCCAAATCGAGGGTTGTGGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGCGACAG
* * ** * *
21839205 CGGGACCGGTAGCACATAGAGGGGACCGGGTCAGTCCCCGACTTACGCATTATGCCTCTCTGGCT
66 CAGGATCGACAGCACATAG-GGGGATCGGGTCAGTCCCCG-CTTACGCATTCTGCCTCTCTGGCT
* * *
21839270 GACTCAGCCCCCCGAACGCTCATTTCGTG
129 GGCTGAG-CACCCGAACGCTCATTTCGTG
* * * *
21839299 GGTTGACATAGGCATATGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTTGCGACA
1 GGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCGAACCGGACCGAGGGTTGCGACA
* * * * * * * *
21839363 GTAGGATCGACAGCACGTGGGGGGGATCGAGAT-GGTCCCCGGTTTATGCATTCTGCCTCTCCGG
65 GCAGGATCGACAGCACAT-AGGGGGATCG-GGTCAGTCCCC-GCTTACGCATTCTGCCTCTCTGG
** * *
21839427 CTGGCTGAGTGCCCGTACGCTCATTTCATG
127 CTGGCTGAGCACCCGAACGCTCATTTCGTG
*
21839457 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
21839495 CATATAGAGT
Statistics
Matches: 273, Mismatches: 70, Indels: 23
0.75 0.19 0.06
Matches are distributed among these distances:
156 2 0.01
157 23 0.08
158 127 0.47
159 114 0.42
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGCGACAG
CAGGATCGACAGCACATAGGGGGATCGGGTCAGTCCCCGCTTACGCATTCTGCCTCTCTGGCTGG
CTGAGCACCCGAACGCTCATTTCGTG
Found at i:21839498 original size:26 final size:26
Alignment explanation
Indices: 21839468--21839520 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21839458 GTTGGCTTAG
*
21839468 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
21839494 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21839520 G
1 G
21839521 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21840018 original size:159 final size:159
Alignment explanation
Indices: 21839738--21840205 Score: 491
Period size: 159 Copynumber: 2.9 Consensus size: 159
21839728 AGATCAGACC
* * * * * * * *
21839738 AGACCGAGGGTT-TCGACAGCAGGATCGGTAGCACGCAG-GGGGGATCGGGTCGATCC-CTGGCT
1 AGACCGAGGGTTGT-GGCAGCGGGATCGGCAGCACACAGAGGGGGATCAGGCCAATCCTC-AGCT
* * * * * *
21839800 TGCGCATTCTGCCTCTCTGGCCGGTTGAGCGCCCGTACGC-CTGTTTCATGGGTTGGCTTAGGCC
64 TACGCATTCTGCCTCTCTGGTCGGCTAAGCGCCCGAACGCTC-GTTTCATGGGTTGGCTTAGGCA
21839864 TAGGGAGTTCATTCCATGTCTAAGCCCCAG-T
128 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCT
* *
21839895 CAGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACATAGAGTGGGATCAGGCCAATCCTCAGCTT
1 -AGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACACAGAGGGGGATCAGGCCAATCCTCAGCTT
* * * * *
21839960 ACGCATTCTGTCTCTCTGGTGGGCTAAGCGCCCGCACGCTCGTTTCGTGGCTTGGCTTAGGCATA
65 ACGCATTCTGCCTCTCTGGTCGGCTAAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATA
* *
21840025 GGGAGTTGATTCCATGTCTAAGCCCTAGCT
130 GGGAGTTCATTCCATGTCTAAGCCCCAGCT
* * * ** * * *
21840055 GGATCGAGGGTTGTGGCAGCGGGATCGGTAGCATGCAGAGGGGGATCAGGTCGATCCTCGGCTTA
1 AGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACACAGAGGGGGATCAGGCCAATCCTCAGCTTA
* * * * * *
21840120 TGCATTATGCCTCT-TCGGTTGGCTCAGCACCCGAACGCTCGTTTCATGGGTTGACTTAGGCATA
66 CGCATTCTGCCTCTCT-GGTCGGCTAAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATA
*
21840184 TGGAGTTCATTCCCA-GTCTAAG
130 GGGAGTTCATT-CCATGTCTAAG
21840206 TAGGATGGAC
Statistics
Matches: 259, Mismatches: 44, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
158 32 0.12
159 221 0.85
160 6 0.02
ACGTcount: A:0.17, C:0.25, G:0.32, T:0.25
Consensus pattern (159 bp):
AGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACACAGAGGGGGATCAGGCCAATCCTCAGCTTA
CGCATTCTGCCTCTCTGGTCGGCTAAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGCT
Found at i:21840390 original size:26 final size:26
Alignment explanation
Indices: 21840341--21840393 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21840331 GTTGGCTTAG
*
21840341 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
21840367 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
21840393 G
1 G
21840394 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:21840531 original size:197 final size:184
Alignment explanation
Indices: 21840271--21840749 Score: 478
Period size: 197 Copynumber: 2.5 Consensus size: 184
21840261 ATCGGGTCGG
* ** * * *
21840271 TCCTCGACTTGCGCATTCTACCTCTATGGCCGACTGAGAGCTCGCACGCTCATTTCGTGGGTTGG
1 TCCTCGACTTGCGCATTCTGCCTCTCCGGCTGACTGAGAGCCCGCACGCTCGTTTCGTGGGTTGG
* *
21840336 CTTAGGCATACGGAGTTCATTTCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC-GAA
66 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-A
* * ** * * * *
21840400 CCGGACCGAGGGTTACAATAGTAGGACCAGTAGCAGGATCGGTAGCACTCAGGGGAGGACCAGGT
130 CCAGACCGAGGG-T----T-G--CGA-CAGT---AGGATCGACAGAACGCA-GGGAGGACCAAGC
*
21840465 TGA
182 CGA
* * *
21840468 TCC-CTGACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTG
1 TCCTC-GACTTGCGCATTCTGCCTCTCCGGCTGACTGAGAGCCCGCACGCTCGTTTCGTGGGTTG
* * * * *** *
21840532 ACTTAGGCGTACAGAGTTCATCCCCCATCTAAGCTTACGGAGTTCATTCCCAGTCTAAGATCAGA
65 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
*
21840597 TCAGACCGAGGGTTGCGACAGTAGGATCGACAGAACGCAGGGAGGACCAAGCCGA
130 CCAGACCGAGGGTTGCGACAGTAGGATCGACAGAACGCAGGGAGGACCAAGCCGA
* * * *
21840652 TCCTCGACTTGCGTATTCTGCCTCCCCGG-TCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTG
1 TCCTCGACTTGCGCATTCTGCCTCTCCGGCT-GACTGAGAGCCCGCACGCTCGTTTCGTGGGTTG
* *
21840716 GCTTAGGCCTAGGGAGTTCATTCCATGTCTAAGC
65 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
21840750 CCCAGCTAGA
Statistics
Matches: 235, Mismatches: 43, Indels: 21
0.79 0.14 0.07
Matches are distributed among these distances:
183 1 0.00
184 93 0.40
185 14 0.06
188 4 0.02
189 2 0.01
191 1 0.00
192 1 0.00
196 2 0.01
197 116 0.49
198 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (184 bp):
TCCTCGACTTGCGCATTCTGCCTCTCCGGCTGACTGAGAGCCCGCACGCTCGTTTCGTGGGTTGG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCGAGGGTTGCGACAGTAGGATCGACAGAACGCAGGGAGGACCAAGCCGA
Found at i:21840908 original size:861 final size:862
Alignment explanation
Indices: 21839050--21840895 Score: 2308
Period size: 861 Copynumber: 2.1 Consensus size: 862
21839040 GCGACAGCAA
* * * * * * *
21839050 GATCGACAGCACGCA-AGGGGGATTGGGCCGATCCCCTGCTTGCGCACTCTGCCTCTCTGGCCGG
1 GATCGACAGCACGCAGAGGGGGATCGGGCCAATCCTCAGCTTACGCATTCTGCCTCTCTGGCTGG
* *
21839114 CTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGC
66 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
* *
21839179 CCTAGCCAAATCGAGGGTTGTGGCAGCGGGACCGGTAGCACATAGAGGGGACCGGGTCAGTCCCC
131 CCTAGCCAAATCGAGGGTTGTGGCAGCGGGACCGGTAGCACAGAGAGGGGACCAGGTCAGTCCCC
* *
21839244 GACTTACGCATTATGCCTCTCTGGCTGACTCAGCCCCCCGAACGCTCATTTCGTGGGTTGACATA
196 GACTTACGCATTATGCCTCTCTGGCTGACTCAGCCACCCGAACGCTCATTTCATGGGTTGACATA
* *
21839309 GGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGTAGGATCGAC
261 GGCATATGGAGTTCATTCCCAGTCTAAGATAGGATCGGACCGAGGGCTGCGACAGTAGGATCGAC
* ** * * * * * *
21839374 AGCACGTGGGGGGGATCGAGATGGTCCCCGGTTTATGCATTCTGCCTCTCCGGCTGGCTGAGTGC
326 AGCACGAGGGGGGGATCGAGATGGTCCCCGACTTACGCATTCTACCTCTACGGCCGACTGAGAGC
*
21839439 CCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAGAG
391 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAGAG
* *
21839504 TTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGACAGCAGGACCAGTAGCAGGATCGA
456 TTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTACAACAGCAGGACCAGTAGCAGGATCGA
* * *
21839569 CAGCACGCATGGGAGGATCGAGTCGATCCCCGACTTGCACATTCTGCCTCTTCGACCAACCTCTC
521 CAGCACGCAGGGGAGGACCGAGTCGATCCCCGACTTGCACATTCTGCCTCTT---CC-ACCGCT-
* * * *
21839634 CAGTCGATTGAGTGCCCACACTCTCCTTTCGTGGGTTGACTTAGGCATAGGAGTTCATCCCCAGT
581 C-G-CGACTGAGTGCCCACACGCTCCTTTCATGGGTTGACTTAGGCATAAGAGTTCATCCCCAGT
*
21839699 CTAAGCTTACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTTCGACAGCAGGATC
644 CTAAGCTTACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATC
** * * * ** * * * * **
21839764 GGTAGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAG
709 GACAGAACGCAGGGAGGACCAAGCCGATCCCTGACTTGCGCATTCTGCCTCCCCGGCCGACTGAG
21839829 CGCCCGTACGCCTGTTTCATGGGTTGGCTTAGGCCTAGGGAGTTCATTCCATGTCTAAGCCCCAG
774 CGCCCGTACGCCTGTTTCATGGGTTGGCTTAGGCCTAGGGAGTTCATTCCATGTCTAAGCCCCAG
21839894 TCAGACCGAGGGTTGTGGCAGCGG
839 TCAGACCGAGGGTTGTGGCAGCGG
* ** * * *
21839918 GATCGGCAGCACATAGAGTGGGATCAGGCCAATCCTCAGCTTACGCATTCTGTCTCTCTGG-TGG
1 GATCGACAGCACGCAGAGGGGGATCGGGCCAATCCTCAGCTTACGCATTCTGCCTCTCTGGCT-G
* * * *
21839982 GCTAAGCGCCCGCACGCTCGTTTCGTGGCTTGGCTTAGGCATAGGGAGTTGATTCCATGTCTAAG
65 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
*** * *
21840047 CCCTAGCTGGATCGAGGGTTGTGGCAGCGGGATCGGTAGCATGCAGAG-GGGGATCAGGTC-GAT
130 CCCTAGCCAAATCGAGGGTTGTGGCAGCGGGACCGGTAGCA--CAGAGAGGGGACCAGGTCAG-T
* * * * * *
21840110 CCTCGGCTTATGCATTATGCCTCT-TCGGTTGGCTCAG-CACCCGAACGCTCGTTTCATGGGTTG
192 CCCCGACTTACGCATTATGCCTCTCT-GGCTGACTCAGCCACCCGAACGCTCATTTCATGGGTTG
* **
21840173 ACTTAGGCATATGGAGTTCATTCCCAGTCTAAG-TAGGATGGACTGGACCGAGGGCTGCGGTAGT
256 ACATAGGCATATGGAGTTCATTCCCAGTCTAAGATAGGAT---C-GGACCGAGGGCTGCGACAGT
* * * * * * *
21840237 AGGTTCGATAGCATGAAGGGGGGGATCG-GGTCGGTCCTCGACTTGCGCATTCTACCTCTATGGC
317 AGGATCGACAGCACG-AGGGGGGGATCGAGAT-GGTCCCCGACTTACGCATTCTACCTCTACGGC
* * *
21840301 CGACTGAGAGCTCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTA
380 CGACTGAGAGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * * *
21840366 AGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACAATAGTAGGACCAGT
445 AGCATATAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTACAACAGCAGGACCAGT
** * * * *
21840431 AGCAGGATCGGTAGCACTCAGGGGAGGACC-AGGTTGATCCCTGACTTGCGCATTCTGCCTC-T-
510 AGCAGGATCGACAGCACGCAGGGGAGGACCGA-GTCGATCCCCGACTTGCACATTCTGCCTCTTC
* * * *
21840493 C-CGGCT-G-G-CTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCGTACAGAGTTCATC
574 CACCGCTCGCGACTGAGTGCCCACACGCTCCTTTCATGGGTTGACTTAGGCATA-AGAGTTCAT-
*
21840554 CCCCA-TCTAAGCTTACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAG
637 CCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAG
* * *
21840618 TAGGATCGACAGAACGCAGGGAGGACCAAGCCGAT-CCTCGACTTGCGTATTCTGCCTCCCCGGT
702 CAGGATCGACAGAACGCAGGGAGGACCAAGCCGATCCCT-GACTTGCGCATTCTGCCTCCCCGGC
*
21840682 CGACTGAGCGCCCGTACG-CTCGTTTCGTGGGTTGGCTTAGGCCTAGGGAGTTCATTCCATGTCT
766 CGACTGAGCGCCCGTACGCCT-GTTTCATGGGTTGGCTTAGGCCTAGGGAGTTCATTCCATGTCT
21840746 AAGCCCCAG-CTAGACCGAGGGTTGTGGCAGCGG
830 AAGCCCCAGTC-AGACCGAGGGTTGTGGCAGCGG
* * * * * *
21840779 GATCGACAGCACGCAGAGGGGGATCGGGCCTATCTTCGGCTTACGTATTCTACCTCTCTGGCTGA
1 GATCGACAGCACGCAGAGGGGGATCGGGCCAATCCTCAGCTTACGCATTCTGCCTCTCTGGCTGG
* ** * * * * *
21840844 TTGAGCACTGGCACGCTCGTTTTGTGGGTTGACTAAAGCATACGGAGTTCAT
66 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
21840896 CCCCAATCTA
Statistics
Matches: 834, Mismatches: 125, Indels: 45
0.83 0.12 0.04
Matches are distributed among these distances:
860 42 0.05
861 292 0.35
862 6 0.01
863 1 0.00
866 3 0.00
868 18 0.02
869 190 0.23
870 41 0.05
871 5 0.01
872 33 0.04
873 203 0.24
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (862 bp):
GATCGACAGCACGCAGAGGGGGATCGGGCCAATCCTCAGCTTACGCATTCTGCCTCTCTGGCTGG
CTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
CCTAGCCAAATCGAGGGTTGTGGCAGCGGGACCGGTAGCACAGAGAGGGGACCAGGTCAGTCCCC
GACTTACGCATTATGCCTCTCTGGCTGACTCAGCCACCCGAACGCTCATTTCATGGGTTGACATA
GGCATATGGAGTTCATTCCCAGTCTAAGATAGGATCGGACCGAGGGCTGCGACAGTAGGATCGAC
AGCACGAGGGGGGGATCGAGATGGTCCCCGACTTACGCATTCTACCTCTACGGCCGACTGAGAGC
CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAGAG
TTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTACAACAGCAGGACCAGTAGCAGGATCGA
CAGCACGCAGGGGAGGACCGAGTCGATCCCCGACTTGCACATTCTGCCTCTTCCACCGCTCGCGA
CTGAGTGCCCACACGCTCCTTTCATGGGTTGACTTAGGCATAAGAGTTCATCCCCAGTCTAAGCT
TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGAA
CGCAGGGAGGACCAAGCCGATCCCTGACTTGCGCATTCTGCCTCCCCGGCCGACTGAGCGCCCGT
ACGCCTGTTTCATGGGTTGGCTTAGGCCTAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACC
GAGGGTTGTGGCAGCGG
Found at i:21840931 original size:26 final size:26
Alignment explanation
Indices: 21840879--21840933 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
21840869 GGGTTGACTA
* *
21840879 AAGCATACGGAGTTCATCCCCAATCT
1 AAGCATACGAAGTTCATCCACAATCT
* *
21840905 AAGCATACGAAGTTCATTCACAGTCT
1 AAGCATACGAAGTTCATCCACAATCT
21840931 AAG
1 AAG
21840934 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (26 bp):
AAGCATACGAAGTTCATCCACAATCT
Found at i:21841205 original size:343 final size:343
Alignment explanation
Indices: 21840502--21841250 Score: 898
Period size: 343 Copynumber: 2.2 Consensus size: 343
21840492 TCCGGCTGGC
* * * * *
21840502 TGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCGTACAGAGTTCATCCCCCATCTAAGCT
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCA
* * * *
21840567 TACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGTAGGATCGACAGAA
66 TACGAAGTTCATTCACAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGAA
* * *
21840632 CGCAGGGAGGACCAAGCCGATCCTCGACTTGCGTATTCTGCCTCCCCGGTCGACTGAGCGCCCGT
131 CGCAGGGAGGACCAAGCCGATCCTCGACTTGCGCATTCTGCCTCCCCGATCGACTGAGCGCCCGC
* ** *
21840697 ACGCTCGTTTCGTGGGTTGGCTTAGGCCTAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACC
196 ACGCCCGTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACC
* * * * *
21840762 GAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCCTATCTTCGGCTTACGTAT
261 GAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGATCGGGCCAATCCTCGGCTTACGCAT
* *
21840827 TCTACCTCTCTGGCTGAT
326 TATACCTCTCTGGCTCAT
* ** * * * *
21840845 TGAGCACTGGCACGCTCGTTTTGTGGGTTGACTAAAGCATACGGAGTTCATCCCCAATCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCA
* * *
21840910 TACGAAGTTCATTCACAGTCTAAGATC-GAACCGGATCGAGGGTTGCGGCAGCAGGATC-ACCAG
66 TACGAAGTTCATTCACAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGACAGCAGGATCGA-CAG
* * * ** * * ** *
21840973 CACGCAGGGGGGATCGGGCCGATCC-CGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGTGCCC
129 AACGCAGGGAGGACCAAGCCGATCCTCGACTTGCGCATTCTGCCTCCCCGATCGACTGAGCGCCC
* * *
21841037 GCATGCCCTTTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCG
194 GCACGCCC-GTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-A
* *
21841101 GATCGAGGGTTGTGGCAGCGGGACCTG-CAGCACGCAGAAGGGGATCGGGCCAATCCTCGGCTTG
257 GACCGAGGGTTGTGGCAGCGGGACC-GACAGCACGCAGAAGGGGATCGGGCCAATCCTCGGCTTA
* * *
21841165 CGCATTATGCCTTTTTGGC-CAT
321 CGCATTATACCTCTCTGGCTCAT
* * * * *
21841187 CTTAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCCAGTCTAAG
1 -TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAG
21841251 ATCAAACCGG
Statistics
Matches: 337, Mismatches: 63, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
342 42 0.12
343 294 0.87
344 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (343 bp):
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCA
TACGAAGTTCATTCACAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGAA
CGCAGGGAGGACCAAGCCGATCCTCGACTTGCGCATTCTGCCTCCCCGATCGACTGAGCGCCCGC
ACGCCCGTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACC
GAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGATCGGGCCAATCCTCGGCTTACGCAT
TATACCTCTCTGGCTCAT
Found at i:21841376 original size:158 final size:157
Alignment explanation
Indices: 21840907--21841566 Score: 666
Period size: 158 Copynumber: 4.2 Consensus size: 157
21840897 CCCAATCTAA
* * * *
21840907 GCATACGAAGTTCATTCACAGTCTAAGATCGAACCGGATCGAGGGTTGCGGCAGCAGGA-TCACC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGGCAGCAGGACTGA-C
* ** * * *
21840971 AGCACGCAGGGGGGATCGGGCCGATCC-CGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGTGC
65 AGCACGCAGGGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCT-CGGCCGGCTAAGCGC
* * * ** *
21841035 CCGCATGCCCTTTTTAATGGGTTGGCTTAG
129 CCGCACGCTC-GTTTCGTGGGTTGACTTAG
* ** * ** * *
21841065 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCGGGACCTG-
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCGGATCGAGGGTTGCGGCAGCAGGA-CTGA
* * * * * * ** *
21841128 CAGCACGCAGAAGGGGATCGGGCCAATCCTCGGCTTGCGCATTATGCCTTTTTGGCCATCTTAGC
64 CAGCACGCAG-GGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTGCC-TCTCGGCCGGCTAAGC
*
21841193 GCCCGTACGCTCGTTTCGTGGGTTGACTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
21841224 GCATACAGAGTTTATTCCCAGTCTAAGATCAAACCGGATTGAGGGTTGCGGCAGCAAGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGGCAGCAGGACTGACA
* * *
21841289 GCATGCAGGGGGGATCGAGTCGATCC-CTGGCTTGTGCATTCTGCCTCTCGAGCCGGCTAAGCGC
66 GCACGCAGGGGGGATCGAGCCGATCCTC-GGCTTGCGCATTCTGCCTCTCG-GCCGGCTAAGCGC
21841353 CCGCACGCTCGTTTCGTGGGTTGACTTAG
129 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * *
21841382 GCATACGGAGTTCATTCCTAGTCTAAGATTAGATCGTATCAAGGGTTACGGCAGCAGGACTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGGCAGCAGGACTGACA
* * * * *
21841447 GCACGCAGGGGGGAGCGAGCCGATCCTCGGCTTGCGCATTTTACCTCTTCGGTCGGCTAAGCACC
66 GCACGCAGGGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTGCCTC-TCGGCCGGCTAAGCGCC
* * *
21841512 CGCACGCTTGTTTCGTGGGTTGGCCTAG
130 CGCACGCTCGTTTCGTGGGTTGACTTAG
21841540 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
21841567 GATACGGAGT
Statistics
Matches: 409, Mismatches: 80, Indels: 26
0.79 0.16 0.05
Matches are distributed among these distances:
157 8 0.02
158 277 0.68
159 87 0.21
160 35 0.09
161 2 0.00
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGGCAGCAGGACTGACA
GCACGCAGGGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCGGCCGGCTAAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:21841578 original size:26 final size:26
Alignment explanation
Indices: 21841542--21841592 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21841532 TGGCCTAGGC
21841542 ATACGGAGTTCATT-CCATGTCTAAGG
1 ATACGGAGTTCATTCCCA-GTCTAAGG
21841568 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
21841593 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:21841951 original size:26 final size:26
Alignment explanation
Indices: 21841921--21841973 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21841911 GTTCACTTAG
21841921 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
* *
21841947 GCATACGAAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21841973 G
1 G
21841974 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21842134 original size:26 final size:26
Alignment explanation
Indices: 21842104--21842156 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21842094 GTTGACTTAG
21842104 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
21842130 GCATACGGAGTTCATTCCTAGTTTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
21842156 G
1 G
21842157 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:21842292 original size:189 final size:183
Alignment explanation
Indices: 21841903--21842319 Score: 543
Period size: 189 Copynumber: 2.2 Consensus size: 183
21841893 CGTACGCTCA
* * * *
21841903 TTTCATAGGTTCACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCTG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCCCTG
* * *
21841968 TCTAAGATCGGATCGGACCGTGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGACCGGGTCG
66 TCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGACCGGGCCG
** * * * * *
21842033 ATCCTTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGGGCCCGCACGCTCG
131 ATCCTCAGCTTGCGCATTCTACCTCTCCGACCGGCAGAGGGCCCGCACGCCCG
* *
21842086 TTTCATGTGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATT-CCTA
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCCCT-
* * *
21842150 GTTTAAGATCGGATCGGATCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGAC
65 GTCTAAGATCGGATCGGA-C----CGAGGGTTGCGACAGCAGGATCGACAGCACGCA-GGGGGAC
* *
21842215 CGGGCCGAT-CTCCAGCTTGCGTATTCTACCTCTCCGACCGGCAGAGTGCCCGCACGCCCG
124 CGGGCCGATCCT-CAGCTTGCGCATTCTACCTCTCCGACCGGCAGAGGGCCCGCACGCCCG
21842275 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCT-GTCTAAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCTAGTCTAAG
21842320 ATTGGACCGG
Statistics
Matches: 203, Mismatches: 22, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
182 3 0.01
183 71 0.35
184 1 0.00
188 31 0.15
189 92 0.45
190 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (183 bp):
TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCCCTG
TCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGACCGGGCCG
ATCCTCAGCTTGCGCATTCTACCTCTCCGACCGGCAGAGGGCCCGCACGCCCG
Found at i:21842664 original size:26 final size:26
Alignment explanation
Indices: 21842634--21842685 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21842624 GTTGACTTAG
21842634 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21842660 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21842686 AATCGGATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21843670 original size:26 final size:26
Alignment explanation
Indices: 21843641--21843693 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21843631 GTTGGCTTAG
21843641 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
21843667 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21843693 G
1 G
21843694 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21843844 original size:356 final size:341
Alignment explanation
Indices: 21843262--21844022 Score: 862
Period size: 356 Copynumber: 2.2 Consensus size: 341
21843252 CTCTATTTGG
* * * * *
21843262 CTGAGTGCTCTTACGCTTGTTTCATGGGTTGACTTAGGCAAACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGTGCTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTAAGC
* * *
21843327 ATACGGAGTTCATTCCCAGTCTAAAATCGGATCAGATCGAGGGTTACGCAACAGAATCGGTAGCA
65 ATACGGAGTTCATTCCCAGTCTAAAATCGGATCAGATCAAGGGGTACGCAACAGAATCGGCAGCA
* * ** * * **
21843392 TGCAGGGGTGATCGGGTCGATCCTCAGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGTGCCTTT
130 TGCAGGGGGGATCGGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCAGCTGAGCGCCTGC
* *
21843457 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCCCCAG-CTGGAC
195 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-AGAC
* *
21843521 CGAGGGTTGTGGCAGCGGGACCGACAGCA-TGCAGAGGGGGACCGGGCTGATCCCCGTCTTACGC
259 CGAGGGTTGTGGCAGCGAGACCGACAGCACT-CAGAGGGGGACCGGGCTGATCCCCGGCTTACGC
*
21843585 ATTATGCCTCTCCGGTCGA
323 ATTATGCCTCTCCGGCCGA
* * *
21843604 TTGAGTGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAGTGCTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGC
* * * *
21843669 ATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGGTCAAGGATTACGGTAGCAGGACCAACAGC
65 ATACGGAGTTCATTCCCAGTCTAAAATCGGATCAGATCAAGG-----GGTA-C--G--CAACAG-
* * * *
21843734 AGGATGGGCAGCATGCAAGGGGGGATTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACC
119 A--ATCGGCAGCATGC-AGGGGGGATCGGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGACC
* *
21843799 AGCTGAGCGTCC-GCACGCCTGTTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
181 AGCTGAGCG-CCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * * * *
21843863 AGCCCCAGTCAGATCGAGGGTTGTGGCAGCGAGACTGGCAGCACTCTGAGGGGGACTGGGCTGAT
245 AGCCCCAGTCAGACCGAGGGTTGTGGCAGCGAGACCGACAGCACTCAGAGGGGGACCGGGCTGAT
* ** * * *
21843928 CCTCGGCTTGTGTATTATTCCTCTCCGGCCGG
310 CCCCGGCTTACGCATTATGCCTCTCCGGCCGA
* * * * * *
21843960 CTCAGCGCTCGAAAGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
1 CTGAGTGCTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAA
21844023 TATTGGATCG
Statistics
Matches: 346, Mismatches: 54, Indels: 24
0.82 0.13 0.06
Matches are distributed among these distances:
341 3 0.01
342 90 0.26
347 3 0.01
348 1 0.00
350 1 0.00
352 6 0.02
353 1 0.00
355 11 0.03
356 223 0.64
357 7 0.02
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (341 bp):
CTGAGTGCTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAAATCGGATCAGATCAAGGGGTACGCAACAGAATCGGCAGCAT
GCAGGGGGGATCGGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCAGCTGAGCGCCTGCA
CGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCG
AGGGTTGTGGCAGCGAGACCGACAGCACTCAGAGGGGGACCGGGCTGATCCCCGGCTTACGCATT
ATGCCTCTCCGGCCGA
Found at i:21844192 original size:26 final size:26
Alignment explanation
Indices: 21844155--21844207 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21844145 GTTGGCTATG
*
21844155 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
21844181 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21844207 G
1 G
21844208 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21844731 original size:26 final size:26
Alignment explanation
Indices: 21844695--21844745 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21844685 TTGGCTTAGG
21844695 CATACGGAGTTCATT-CCATGTCTAAT
1 CATACGGAGTTCATTCCCA-GTCTAAT
21844721 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
21844746 GAGTTTGAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:21845450 original size:26 final size:26
Alignment explanation
Indices: 21845411--21845463 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21845401 TGGGTTGACT
21845411 TAAGCATACCGAGTTCA-TCCCTAGTC
1 TAAGCATACCGAGTTCATTCCC-AGTC
**
21845437 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACCGAGTTCATTCCCAGTC
21845463 T
1 T
21845464 GAGATCAGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
TAAGCATACCGAGTTCATTCCCAGTC
Found at i:21845959 original size:157 final size:154
Alignment explanation
Indices: 21845480--21845973 Score: 420
Period size: 157 Copynumber: 3.1 Consensus size: 154
21845470 AGACCGAACT
** * * *
21845480 GAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGGGTGGACCCG-GCCAAACCCCGGCTTGTGCAT
1 GAGGGTTGTGGCAGCAGGATC-GCAGCACGCAGGG-GGA-CCGAGCCGATCCCCGACTTGTGCAT
* * * * * * * * *
21845544 TCTACCTTTCCGGCCGATTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGAATAAGGAGT
63 TCTACCTCTCCGACCGACTGAGCACCCGAACGCCC-ATTCGTGGGTTGGCTTAGGCATACGGAGT
* *
21845609 TCATTCCATGTCTAAGCCCCAGCCGGACA
127 TCATT-CATGTCTAAACCCCAGCCGGACC
* * * **
21845638 GAAGGTTGTGGCAGC-GAGACCTGTAGCACGCAGAGGGGGACCGAGCCGATCCCCGACTTGCACA
1 GAGGGTTGTGGCAGCAG-GATC-GCAGCACGC--AGGGGGACCGAGCCGATCCCCGACTTGTGCA
* * * * * ** * * * *
21845702 TTATGCCTCTCTGACCGACTCA-AAGCTTGAATGCCCATTTTGTGGGTTGACTTAGGCATACAGA
62 TTCTACCTCTCCGACCGACTGAGCA-CCCGAACGCCCA-TTCGTGGGTTGGCTTAGGCATACGGA
* * ** *
21845766 GTTCATTCACAGTCTAAGATCGGA-TCGGACC
125 GTTCATTCA-TGTCTAA-ACCCCAGCCGGACC
* * * *
21845797 AAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGGACCGAGCCGGTCCCCGACTTATGCATTC
1 GAGGGTTGTGGCAGCAGGATCG-CAGCACGCAGGGGGACCGAGCCGATCCCCGACTTGTGCATTC
* *
21845862 TACCTCTCCGATCGACTGAGCACCCGTACGCTCCATTCGTGGGTTGGCTTAGGCATACGGAGTTC
65 TACCTCTCCGACCGACTGAGCACCCGAACGC-CCATTCGTGGGTTGGCTTAGGCATACGGAGTTC
21845927 ATTCTATGTCTAAACCCCAGCCGGACC
129 ATTC-ATGTCTAAACCCCAGCCGGACC
*
21845954 GAGGGTTGTGGCAACAGGAT
1 GAGGGTTGTGGCAGCAGGAT
21845974 TGGCAGCGAG
Statistics
Matches: 254, Mismatches: 68, Indels: 29
0.72 0.19 0.08
Matches are distributed among these distances:
156 3 0.01
157 110 0.43
158 34 0.13
159 100 0.39
160 7 0.03
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.21
Consensus pattern (154 bp):
GAGGGTTGTGGCAGCAGGATCGCAGCACGCAGGGGGACCGAGCCGATCCCCGACTTGTGCATTCT
ACCTCTCCGACCGACTGAGCACCCGAACGCCCATTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
TCATGTCTAAACCCCAGCCGGACC
Found at i:21846118 original size:26 final size:26
Alignment explanation
Indices: 21846082--21846134 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21846072 GTTGGCTTAG
21846082 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
21846108 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
21846134 G
1 G
21846135 ATCAGACTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:21846590 original size:158 final size:157
Alignment explanation
Indices: 21846370--21846661 Score: 354
Period size: 158 Copynumber: 1.9 Consensus size: 157
21846360 GGGTTGCAGC
* * * * *
21846370 AGCAGGATCGATAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCTGG
1 AGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCTGA
* * ** * *
21846435 TCGGCTGAGCACCCGCACAC-CAGTTTCATTTATTGGCTTAGGCATAGGGAGTTCAT-TCCATGT
66 TCGGCTCAGCACCCGAACACTCA-TTTCATGGATTGACTTAGGCATAGGGAGTTCATCCCCA-GT
21846498 CTAAGCCCCAGCTGACTGAGGGTTGTGGT
129 CTAAGCCCCAGCTGACTGAGGGTTGTGGT
* * * * * *
21846527 AGCAGGATCGACAGCACGCAGAGGGTGATCGGGCTGATCCTCAGCTTGCGCATTATGCTTCTCTG
1 AGCAGGATCGACAGCACGCAG-GGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCTG
* * * *
21846592 ATCGGCTCAGCGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTC
65 ATCGGCTCAGCACCCGAACACTCATTTCATGGATTGACTTAGGCATAGGGAGTTCATCCCCAGTC
21846657 TAAGC
130 TAAGC
21846662 ATACGGAGTT
Statistics
Matches: 111, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
157 20 0.18
158 86 0.77
159 5 0.05
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
AGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCTGA
TCGGCTCAGCACCCGAACACTCATTTCATGGATTGACTTAGGCATAGGGAGTTCATCCCCAGTCT
AAGCCCCAGCTGACTGAGGGTTGTGGT
Found at i:21846664 original size:26 final size:26
Alignment explanation
Indices: 21846634--21846686 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21846624 GTTGACTTAG
* *
21846634 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
21846660 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
21846686 G
1 G
21846687 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:21846811 original size:184 final size:183
Alignment explanation
Indices: 21846527--21847591 Score: 569
Period size: 184 Copynumber: 5.7 Consensus size: 183
21846517 GGGTTGTGGT
* * * *
21846527 AGCAGGATCGACAGCACGCA-GAGGGTGATCGGGCTGATCCTCAGCTTGCGCATTATGCTTCTCT
1 AGCAGGATCGACAGCACGCAGGA-GG-GACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCT
* * * * *
21846591 -GATCGGCTCAGCGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCA-
64 GGCT-GGCTGAGCGCCCGAACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCAT
*
21846654 GTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAACTGGACCGAGGGTTGTGAC
127 GTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAA-TGGACCGAGGGTTGCGAC
* * * *
21846712 AGCAGGATCGACAGCATGCAGGAGGGACCAGGCCGATCCCCAGCTTACGCATTTTGCCTCTCTGG
1 AGCAGGATCGACAGCACGCAGGAGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCTGG
* * * * *
21846777 CTGGCGGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
66 CTGGCTGAGCGCCCGAACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCT
* * * * * * * * * **
21846842 AAGC---C-----CCA-ACCGAACCGAGGGTTG--TGGTAGC-A-GG-ACCGAC
131 AAGCATACGGAGTTCATTCCCAATCTAAGATCGAATGG-ACCGAGGGTTGCGAC
* ** * * * * *
21846882 AGCGGGATCGACAGCAAACAGAGGGGGACTGGGCAGATCCCCGGCTTGCGCATTATGCCTCTC-A
1 AGCAGGATCGACAGCACGCAG-GAGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCTG
** * * ** **
21846946 GCTGATTGAGCACCCGTACGCTCATTTTGGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-G
65 GCTGGCTGAGCGCCCGAACGC-CCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATG
* * *
21847010 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGAATCGGACCGAGGGTTGCGAC
128 TCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAAT-GGACCGAGGGTTGCGAC
** * * ** * * *
21847067 AGCAGGATCGGTAGCACGCAGGGGGGATCGGGCCGATCCCTGGTTTGTGCATTCTGCCTCT-TCG
1 AGCAGGATCGACAGCACGCAGGAGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCT-G
* ** * * * *
21847131 ACCAGCTGAGCGCCCGAACGCTCGGTTAATGGGTTCG-CTTAGGCATACGGAG-TCATTCCATGT
65 GCTGGCTGAGCGCCCGAACGCCCGTTTCATGGGTT-GACTTAGGCATACGGAGTTCATCCCATGT
* * * * *
21847194 CTAAGCACACAGAGTTCATTCCCAGTCTAAGATCGAATCGGATCAAGGGTTACAATAGCAGGACC
129 CTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAAT-GGACCGAGGG-T----T-GC--GA-C
* * * * * * * *
21847259 AGCAACAAGATCGACAGCATGCAAGGGGGGACTGAGCCGATCCCCGGCTTGCACATTCTGCCTCT
1 AG---CAGGATCGACAGCACGC-AGGAGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCT
* * * * * * ** *
21847324 CCGACCGGCCTTTCCGGATGGCTAAGCCTCGCACACCCATTTTGTGAGTTGACTTAGGCATACGG
62 CTGGCTGG-C--T---GA--GC---GCC-CGAACGCCCGTTTCATGGGTTGACTTAGGCATACGG
* ** * * *
21847389 AGTTCATCCCCA-GTCTAAGGATATAGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGT
115 AGTTCAT-CCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC-GAATGGACCGAGGGT
* *
21847453 TACGAT
178 TGCGAC
* * * * * * * * *
21847459 AACAGGATCAACAGCTCGCAGGGGGGATCGGGCCGATCCCC-GACTTGCACATTTTACCTCTCCG
1 AGCAGGATCGACAGCACGCAGGAGGGACCGGGCCGATCCCCAG-CTTGCGCATTATGCCTCTCTG
* * ** * * * *
21847523 ACCGGCTGAGCGCCCGCAA-GCCTATTTCATGGGTTGGCTCAGGCATAGGGAGTTCATTCCATGT
65 GCTGGCTGAGCGCCCG-AACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGT
21847587 CTAAG
129 CTAAG
21847592 ACCGGATCGA
Statistics
Matches: 675, Mismatches: 146, Indels: 119
0.72 0.16 0.13
Matches are distributed among these distances:
170 37 0.05
171 76 0.11
172 7 0.01
173 2 0.00
174 1 0.00
175 9 0.01
176 2 0.00
179 2 0.00
180 9 0.01
181 1 0.00
182 6 0.01
183 58 0.09
184 183 0.27
185 62 0.09
186 2 0.00
188 3 0.00
189 2 0.00
190 2 0.00
191 2 0.00
192 3 0.00
193 1 0.00
195 15 0.02
196 83 0.12
197 14 0.02
199 1 0.00
200 1 0.00
201 2 0.00
202 2 0.00
203 1 0.00
204 3 0.00
207 4 0.01
208 29 0.04
209 44 0.07
210 6 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.22
Consensus pattern (183 bp):
AGCAGGATCGACAGCACGCAGGAGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCTGG
CTGGCTGAGCGCCCGAACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCT
AAGCATACGGAGTTCATTCCCAATCTAAGATCGAATGGACCGAGGGTTGCGAC
Found at i:21847026 original size:26 final size:26
Alignment explanation
Indices: 21846989--21847041 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21846979 GTTGACTTAG
*
21846989 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
21847015 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21847041 G
1 G
21847042 ATTGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21847032 original size:355 final size:340
Alignment explanation
Indices: 21846255--21847199 Score: 1128
Period size: 342 Copynumber: 2.7 Consensus size: 340
21846245 TTCCGGTCGG
* *
21846255 CTGAGCACCCGCACGGTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGC
* * * *
21846320 ATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGATCAAGGGTTGCAGCAGCAGGATCGATAGC
66 ATACGAAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGGA-CAGCAGGATCGATAGC
*
21846385 ACGCAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCTGG-TCGGCTGAGCACCC
130 ACGCAGGGGGGACCG-GCCGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCT-GGCTGAGCGCCC
* * *** * * *
21846449 GCACACCAGTTTCATTTATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGAC
193 GCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAC
* * * * *
21846514 TGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGAGGGTGATCGGGCTGATCCTCAGCTTGCGCA
258 CGAGGGTTGTGGTAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCAGATCCCCAGCTTGCGCA
* * *
21846579 TTATGCTTCTCTGATCGG
323 TTATGCCTCTCAGATCGA
* * *
21846597 CTCAGCGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGC
* * *
21846662 ATACGGAGTTCATTCCCAATCTAAGATCGAA-CTGGACCGAGGGTTGTGACAGCAGGATCGACAG
66 ATACGAAGTTCATTCCCAGTCTAAGATCGAATC-GGACCGAGGGTTG-GACAGCAGGATCGATAG
* * * ** * *
21846726 CATGCAGGAGGGACCAGGCCGATCCCCAGCTTACGCATTTTGCCTCTCTGGCTGGCGGAGCGCCC
129 CACGCAGGGGGGACC-GGCCGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCTGGCTGAGCGCCC
*
21846791 GCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAA
193 GCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCG-A
21846856 CCGAGGGTTGTGGTAGCAGGACCGACAGCGGGATCGACAGCAAACAGAGGGGGA-CTGGGCAGAT
257 CCGAGGGTTGTGGTAGCAGGACCGACA----G--C-AC-G----CAGAGGGGGATC-GGGCAGAT
* *
21846920 CCCCGGCTTGCGCATTATGCCTCTCAGCT-GA
309 CCCCAGCTTGCGCATTATGCCTCTCAGATCGA
* * * *
21846951 TTGAGCACCCGTACGCTCATTTTGGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 CTGAGCACCCGAACGCTCA-TTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAG
* *
21847016 CATACGAAGTTCATTCCCAGTCTAAGATTGAATCGGACCGAGGGTTGCGACAGCAGGATCGGTAG
65 CATACGAAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTG-GACAGCAGGATCGATAG
* * * * **
21847081 CACGCAGGGGGGATCGGGCCGATCCCTGGTTTGTGCATTCTGCCTCT-TCGACCAGCTGAGCGCC
129 CACGCAGGGGGGA-CCGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCT-GGCTGGCTGAGCGCC
* * * * *
21847145 CGAACGCTCGGTTAATGGGTTCGCTTAGGCATACGGAG-TCATTCCATGTCTAAGC
192 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
21847200 ACACAGAGTT
Statistics
Matches: 510, Mismatches: 71, Indels: 32
0.83 0.12 0.05
Matches are distributed among these distances:
341 1 0.00
342 220 0.43
343 29 0.06
347 1 0.00
349 1 0.00
350 2 0.00
351 1 0.00
354 35 0.07
355 218 0.43
356 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (340 bp):
CTGAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGC
ATACGAAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGGACAGCAGGATCGATAGCA
CGCAGGGGGGACCGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCTGGCTGAGCGCCCGCA
CGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGACCGA
GGGTTGTGGTAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCAGATCCCCAGCTTGCGCATTA
TGCCTCTCAGATCGA
Found at i:21848575 original size:26 final size:26
Alignment explanation
Indices: 21848545--21848597 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21848535 GTTGGCTTAG
*
21848545 GCATACGGAGATCATT-CCATGTCTAA
1 GCATACAGAGATCATTCCCA-GTCTAA
*
21848571 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
21848597 G
1 G
21848598 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGATCATTCCCAGTCTAA
Found at i:21849742 original size:26 final size:26
Alignment explanation
Indices: 21849693--21849744 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21849683 GTTGGCTTAG
* *
21849693 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
21849719 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
21849745 TATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:21850938 original size:26 final size:26
Alignment explanation
Indices: 21850902--21850954 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21850892 GTTTGCTTAG
*
21850902 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21850928 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21850954 G
1 G
21850955 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21851644 original size:159 final size:157
Alignment explanation
Indices: 21851282--21851706 Score: 401
Period size: 159 Copynumber: 2.7 Consensus size: 157
21851272 TCCCCAGTCC
* * *
21851282 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGA-TCGAGGGTTGTGGCAGCAGGATCG
1 AAGCATACGGAGTTCATTCCCAGTCTAAGGTCGGACCGGACT-GAGGGTTGTGGCAGCAGGACCG
* * * *
21851346 GCAACACGCAGGGGGACCGTGTCGATCCCTGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCG
65 GCAACACGCAGGGGGACCGGGTCGATCCCTGGCTTGCACATTCTACCTCTCCGACCGACTCAGCG
* *
21851411 CCCACACGCCAGTTTCGTGGGTTGGCTT
130 CCCACACGCCAGTTTCATGGGTTGACTT
* * * ** * ** * * * * *
21851439 AAGCATAGGGAGATCTTTCCTTGTCTAA-GCCCTAGTCAGACCGAGGGTTGTGGCTGCGGGACCG
1 AAGCATACGGAGTTCATTCCCAGTCTAAGGTCGGA-CCGGACTGAGGGTTGTGGCAGCAGGACCG
* * * *
21851503 GCAGCACACAG-AGGGGGATCGGGTTGATCCCTGGCTTGCGCATTCTACCTCTCCGGCCGACTCA
65 GCA--ACAC-GCAGGGGGACCGGGTCGATCCCTGGCTTGCACATTCTACCTCTCCGACCGACTCA
* *
21851567 GTGCCCGCACGCTCA-TTTCATGGGTTGACTT
127 GCGCCCACACGC-CAGTTTCATGGGTTGACTT
* * * * * * *
21851598 AGGCATACGAAGTTCATTCCCAATCTAAGGTCGGACCGGACTGAGGGTTGCGGTAGCAGGATCGA
1 AAGCATACGGAGTTCATTCCCAGTCTAAGGTCGGACCGGACTGAGGGTTGTGGCAGCAGGACCGG
* **
21851663 CAACACGCAGGGGGGACCGGG-CCAGTCCCCAGCTTGCACATTCT
66 CAACACGCA-GGGGGACCGGGTCGA-TCCCTGGCTTGCACATTCT
21851707 GGCTCTTCAG
Statistics
Matches: 204, Mismatches: 54, Indels: 19
0.74 0.19 0.07
Matches are distributed among these distances:
156 3 0.01
157 53 0.26
158 26 0.13
159 116 0.57
160 6 0.03
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.21
Consensus pattern (157 bp):
AAGCATACGGAGTTCATTCCCAGTCTAAGGTCGGACCGGACTGAGGGTTGTGGCAGCAGGACCGG
CAACACGCAGGGGGACCGGGTCGATCCCTGGCTTGCACATTCTACCTCTCCGACCGACTCAGCGC
CCACACGCCAGTTTCATGGGTTGACTT
Done.