Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 211 of 402
Found at i:21851876 original size:134 final size:134
Alignment explanation
Indices: 21851640--21851896 Score: 311
Period size: 134 Copynumber: 1.9 Consensus size: 134
21851630 GGACCGGACT
* * *
21851640 GAGGGTTGCGGTAGCAGGATCGACAACACGCAGGGGGGACCGGGCCAGTCCCCAGCTTGCACATT
1 GAGGGTTGCGGTAGCAAGATCGACAACACGCAGGAGGGACCGAGCCAGTCCCCAGCTTGCACATT
* * * * * *
21851705 CTGGCTCTTCAGCCGGTTGAGCACCTGCACGCTCATTTCATGGGTTTGCTTAGGCATACGGACTG
66 CTGCCTCTTCAGCCGGCTGAGCACCCGCACACGCATTTCATGGGTTCGCTTAGGCATACGGACTG
21851770 GATC
131 GATC
* **** *
21851774 GAGGGTTGCGGTAGCAAGATCGACAGCACGCAGGAGGGACCGAGCC-GATCTTTGGCTTGCGCAT
1 GAGGGTTGCGGTAGCAAGATCGACAACACGCAGGAGGGACCGAGCCAG-TCCCCAGCTTGCACAT
* * * *
21851838 TCTGCCTCTTC-GATCGGCTGAGCGCCCGTACACGCATTTCGTGGGTTCGCTTAGGCATA
65 TCTGCCTCTTCAG-CCGGCTGAGCACCCGCACACGCATTTCATGGGTTCGCTTAGGCATA
21851897 GGGAGTTCAT
Statistics
Matches: 102, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
133 2 0.02
134 100 0.98
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.22
Consensus pattern (134 bp):
GAGGGTTGCGGTAGCAAGATCGACAACACGCAGGAGGGACCGAGCCAGTCCCCAGCTTGCACATT
CTGCCTCTTCAGCCGGCTGAGCACCCGCACACGCATTTCATGGGTTCGCTTAGGCATACGGACTG
GATC
Found at i:21852966 original size:27 final size:26
Alignment explanation
Indices: 21852940--21852995 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
21852930 TGGGTTGACT
**
21852940 TAAGCAGACGGAGTTCATCCCCAGAC
1 TAAGCAGAAAGAGTTCATCCCCAGAC
* * *
21852966 TAAGCATAAAGAGTTCATTCCCAGTC
1 TAAGCAGAAAGAGTTCATCCCCAGAC
21852992 TAAG
1 TAAG
21852996 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (26 bp):
TAAGCAGAAAGAGTTCATCCCCAGAC
Found at i:21853179 original size:184 final size:187
Alignment explanation
Indices: 21852925--21853545 Score: 536
Period size: 196 Copynumber: 3.2 Consensus size: 187
21852915 CGCATTCTCG
* * * * * **
21852925 TTTCATGGGTTGACTTAAGCAGACGGAGTTCATCCCCA-GACTAAGCATAAAGAGTTCATTCCCA
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCA-CTCCATGTCTAAGCATACGGAGTTCATTCCCA
* * * *
21852989 GTCTAAGATTGGACCGGACCGAGGGTTA-C-G-GTAGCAGGATCGACAGCACGTAGGGGGGACCG
65 GTCTAAGATCGGACCGGACCGAGGGTTAGCAGAGCAGCAGGATCGACAGAACGTAGGAGGGACCG
* * * * *
21853051 AGCCGATCCCCAGCTTGCGTATTCTACCTCTCCGACCGGCTGAACACCCGCATGCCCA
130 AGCCGATCCCCACCTTACGCATTCTACCTCTCCGACCGACTGAACACCCGCACGCCCA
* *
21853109 TTTCATGGGTTGGCTTAGGTATA-GAGAGTTCACTCCATGTCTAAGCATACGGAATTCATTCCCA
1 TTTCATGGGTTGGCTTAGGCATACG-GAGTTCACTCCATGTCTAAGCATACGGAGTTCATTCCCA
* * * *
21853173 GTCTAAGATCGAACCGAATCGAGGGTTACGACAGCAGGACCAGCAGCAGGATCGACAGAATGTAG
65 GTCTAAGATCGGACCGGACCGAGGGTT-----AGCA-G---AGCAGCAGGATCGACAGAACGTAG
* * * * ** * * *
21853238 GAGGGATCGGGCCGATCCCTACCTTACGCATTTTACCTCTCCGATTGACTTAGCACCCGCACGCT
121 GAGGGACCGAGCCGATCCCCACCTTACGCATTCTACCTCTCCGACCGACTGAACACCCGCACGCC
*
21853303 CG
186 CA
* *
21853305 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCACTCCATGTCTAAGCATACGGAGTTCATTCCCAG
* *
21853370 TCTAAGATCGGACCAGACCGAGGGTTATGACAGCAAGACCAGCAGTAGGATCGACAGCACGTAGG
66 TCTAAGATCGGACCGGACCGAGGGTTA-G-CAG--AG--CAGC---AGGATCGACAGAACGTAGG
* * * * * * * ** ** *
21853435 -GGGACTGGGCCGAT-CCCAGGCTTGCGCATTCTACTTCTCCGGCCGATTGAGTACCCATACGCT
122 AGGGACCGAGCCGATCCCCA-CCTTACGCATTCTACCTCTCCGACCGACTGAACACCCGCACGCC
21853498 CA
186 CA
** * *
21853500 TTTTGTGGGTTGGCATAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCACTCCATGTCTAAGC
21853546 CCCAGTCGGA
Statistics
Matches: 353, Mismatches: 61, Indels: 35
0.79 0.14 0.08
Matches are distributed among these distances:
183 5 0.01
184 71 0.20
189 1 0.00
190 1 0.00
191 4 0.01
192 3 0.01
193 6 0.02
194 3 0.01
195 89 0.25
196 169 0.48
197 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (187 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCACTCCATGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCGGACCGGACCGAGGGTTAGCAGAGCAGCAGGATCGACAGAACGTAGGAGGGACCGA
GCCGATCCCCACCTTACGCATTCTACCTCTCCGACCGACTGAACACCCGCACGCCCA
Found at i:21853355 original size:196 final size:193
Alignment explanation
Indices: 21853021--21853545 Score: 651
Period size: 196 Copynumber: 2.7 Consensus size: 193
21853011 GGGTTACGGT
* *
21853021 AGCAGGATCGACAGCACGTAGGGGGGACCGAGCCGATCCCCAGCTTGCGTATTCTACCTCTCCGA
1 AGCAGGATCGACAGCACGTA-GGGGGA-CGGGCCGAT-CCCAGCTTGCGCATTCTACCTCTCCGA
* * * * * * * *
21853086 CCGGCTGAACACCCGCATGCCCATTTCATGGGTTGGCTTAGGTATA-GAGAGTTCACTCCATGTC
63 CCGACTTAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG-GAGTTCATTCCATGTC
* *
21853150 TAAGCATACGGAATTCATTCCCAGTCTAAGATCGAACC-GAATCGAGGGTTACGACAGCAGGACC
127 TAAGCATACGGAATTCATTCCCAGTCTAAGATCGAACCAG-ACCGAGGGTTACGACAGCAAGACC
21853214 AGC
191 AGC
* * * * *
21853217 AGCAGGATCGACAGAATGTAGGAGGGATCGGGCCGATCCCTACCTTACGCATTTTACCTCTCCGA
1 AGCAGGATCGACAGCACGTAGG-GGGA-CGGGCCGATCCC-AGCTTGCGCATTCTACCTCTCCGA
** *
21853282 TTGACTTAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
63 CCGACTTAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * *
21853347 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGACAGCAAGACCAG
128 AAGCATACGGAATTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAGCAAGACCAG
21853412 C
193 C
* * *
21853413 AGTAGGATCGACAGCACGTAGGGGGACTGGGCCGATCCCAGGCTTGCGCATTCTACTTCTCCGGC
1 AGCAGGATCGACAGCACGTAGGGGGAC-GGGCCGATCCCA-GCTTGCGCATTCTACCTCTCCGAC
* ** * *
21853478 CGA-TTGAGTACCCATACGCTCATTTTGTGGGTTGGCATAGGCATACGGAGTTCATTCCATGTCT
64 CGACTT-AGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
21853542 AAGC
128 AAGC
21853546 CCCAGTCGGA
Statistics
Matches: 282, Mismatches: 40, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
194 4 0.01
195 96 0.34
196 180 0.64
197 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (193 bp):
AGCAGGATCGACAGCACGTAGGGGGACGGGCCGATCCCAGCTTGCGCATTCTACCTCTCCGACCG
ACTTAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CATACGGAATTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAGCAAGACCAGC
Found at i:21853359 original size:26 final size:26
Alignment explanation
Indices: 21853323--21853375 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21853313 GTTGGCTTAG
21853323 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21853349 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21853375 G
1 G
21853376 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21853648 original size:26 final size:26
Alignment explanation
Indices: 21853619--21853670 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21853609 TGGGTTGACT
*
21853619 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCAGACGGAGTTCATCCCCAGTC
*
21853645 TAAGCAGACGGAGTTCATTCCCAGTC
1 TAAGCAGACGGAGTTCATCCCCAGTC
21853671 GAAGATTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (26 bp):
TAAGCAGACGGAGTTCATCCCCAGTC
Found at i:21854180 original size:26 final size:26
Alignment explanation
Indices: 21854144--21854196 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21854134 GTTGGCTTAG
21854144 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
21854170 GCATCCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21854196 G
1 G
21854197 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21854510 original size:184 final size:184
Alignment explanation
Indices: 21854170--21854586 Score: 500
Period size: 184 Copynumber: 2.3 Consensus size: 184
21854160 CCATGTCTAA
* * * * * * *
21854170 GCATCCGGAGTTCATTC-CCAGTCTAAGATCGGATCAGA-CTGAGGGTTG-CGGTAGCAAGACTA
1 GCATACGGAGTTCA-TCACCAGTCTAAGATCAGACCGGATC-GAGGGTTGTAGCT-GCAGGACTA
* * * * *
21854232 GCAGTAGGATCGATAGCATGCAGGAGTGGATCGAGCCGATCCTCGGCTTTCATATTTTACCTCTC
63 GCAGCAGGATCGACAGCATGCAGGAGTGGATCGAGCCGATCCTCAGCTTTCACATTCTACCTCTC
* *
21854297 CAGTCGACCTTTCTAGCCTGCTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAG
128 CAGTCGACCTCTCTAGCCTGCTAAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAG
* * *
21854354 GCATATGGAGTTTATCCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTAGCTGCAGGACTAGCA
1 GCATACGGAGTTCATCACCAGTCTAAGATCAGACCGGATCGAGGGTTGTAGCTGCAGGACTAGCA
* * * * **
21854419 GCGGGATCGACAGCATGTAGGGGTGGATCGAGCCGATCCTCAGCTTTCACATTCTGCCTCTCTGG
66 GCAGGATCGACAGCATGCAGGAGTGGATCGAGCCGATCCTCAGCTTTCACATTCTACCTCTCCAG
* * * * *
21854484 TCGGCCTCTC-CGGCTAGCTAAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAG
131 TCGACCTCTCTAGCCT-GCTAAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAG
* *
21854538 GCATACGGAGTTCATCACCAGTCTAAGATCATACCGGGTCGAGGGTTGT
1 GCATACGGAGTTCATCACCAGTCTAAGATCAGACCGGATCGAGGGTTGT
21854587 GACAGCAGGA
Statistics
Matches: 197, Mismatches: 32, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
183 5 0.03
184 189 0.96
185 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
GCATACGGAGTTCATCACCAGTCTAAGATCAGACCGGATCGAGGGTTGTAGCTGCAGGACTAGCA
GCAGGATCGACAGCATGCAGGAGTGGATCGAGCCGATCCTCAGCTTTCACATTCTACCTCTCCAG
TCGACCTCTCTAGCCTGCTAAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAG
Found at i:21854733 original size:26 final size:26
Alignment explanation
Indices: 21854697--21854749 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21854687 GTTGACTTAG
*
21854697 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
21854723 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21854749 G
1 G
21854750 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21855274 original size:26 final size:26
Alignment explanation
Indices: 21855199--21855268 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
21855189 GTTGGCTTAG
*
21855199 GCATACAAAGTTCATTCCATGTCTAT
1 GCATACAGAGTTCATTCCATGTCTAT
*
21855225 GCCTACAGAGTTCATTCCATGTCTAT
1 GCATACAGAGTTCATTCCATGTCTAT
21855251 GCATACAGAGTTCATTCC
1 GCATACAGAGTTCATTCC
21855269 TAGTCTTAGA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAT
Found at i:21855465 original size:26 final size:26
Alignment explanation
Indices: 21855435--21855487 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21855425 GTTGACCTAG
21855435 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
21855461 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21855487 G
1 G
21855488 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21855870 original size:159 final size:159
Alignment explanation
Indices: 21855674--21855960 Score: 335
Period size: 159 Copynumber: 1.8 Consensus size: 159
21855664 TTGTGGCAGC
* * * * * * * **
21855674 AGGACCGACAGCATGTAGAGGGGGATTGAGCCAATCCCTGGCTTGCGCATTATGCCTCTTCGGTC
1 AGGACCGACAGCATGCAGAGGGGGATCGAGCCAATCCCCGACTTACGCATTATACCTCTCCGACC
*
21855739 TGCTCAACACCCGCACGCTCGTTTCATGGGTT-GACTTAGGAATACAGAGTTCATTCCAAGTCTC
66 GGCTCAACACCCGCACGCTCGTTTCATGGGTTAG-CTTAGGAATACAGAGTTCATTCCAAGTCTC
21855803 AGATTAGACCGGACCGACAGTTGCGAAAGT
130 AGATTAGACCGGACCGACAGTTGCGAAAGT
* * * *
21855833 AGGATCGACAGCATGCA-ATGGGGGATCGGGCCGATCCCCGACTTACGCATTCTACCTCTCCGAC
1 AGGACCGACAGCATGCAGA-GGGGGATCGAGCCAATCCCCGACTTACGCATTATACCTCTCCGAC
* * *** * * * *
21855897 CGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCT
65 CGGCTCAACACCCGCACGCTCGTTTCATGGGTTAGCTTAGGAATACAGAGTTCATTCCAAGTCT
21855961 AAGCATACGG
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
158 1 0.01
159 101 0.98
160 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.24
Consensus pattern (159 bp):
AGGACCGACAGCATGCAGAGGGGGATCGAGCCAATCCCCGACTTACGCATTATACCTCTCCGACC
GGCTCAACACCCGCACGCTCGTTTCATGGGTTAGCTTAGGAATACAGAGTTCATTCCAAGTCTCA
GATTAGACCGGACCGACAGTTGCGAAAGT
Found at i:21855973 original size:26 final size:26
Alignment explanation
Indices: 21855937--21855989 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21855927 GTTAGCTTAG
21855937 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
21855963 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
21855989 G
1 G
21855990 ATCGCCCTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:21856668 original size:158 final size:157
Alignment explanation
Indices: 21856501--21856862 Score: 347
Period size: 158 Copynumber: 2.3 Consensus size: 157
21856491 CGCAAGCCCG
* * * * *
21856501 TTTTGTGGGTTCGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAGCTGGACCGAGGATT
1 TTTTATGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACTGGACCGAGGATT
** * ** * * * *
21856566 GTGGTAGCGGGACCGACAGCA-GCAGAGAGGGATCGGG-CTGAT-CTCTGACTTGCGCATTATGC
65 GCCGCAGCAAGACCGACAGCACACAGAG-GGGACCGGGTC-GATCCCCCG-CTTGCGCATTATGC
* * *
21856628 CTTTTCGGTCGGCTCAGTGCCTGTACGCTCA
127 CTTTCCGGTCGGCTCAGTGCCCGCACGCTCA
* *** *
21856659 TTTTATGGGTTGACTTACGG-ATACGGAGATCATTCCCA-GTCTAATATCAAACTGGACCGAGGG
1 TTTTATGGGTTG-CTTA-GGCATACGGAGTTCATT-CCATGTCTAAGCCCAAACTGGACCGAGGA
* *
21856722 TTGCCGCAGCAAGATCGACAGCACACAGAGGGGACCGGGTCGATCCCCCGCTTGCGCATTCTGCC
63 TTGCCGCAGCAAGACCGACAGCACACAGAGGGGACCGGGTCGATCCCCCGCTTGCGCATTATGCC
* *
21856787 TTTCCGGTCGGCTGAGTGCCCGCACGCTCG
128 TTTCCGGTCGGCTCAGTGCCCGCACGCTCA
* * * *
21856817 TTTCATGGGTTGGCTTAGGCATTCAGAGTTCATTCTATGTCTAAGC
1 TTTTATGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
21856863 ATACAAAGTT
Statistics
Matches: 162, Mismatches: 33, Indels: 18
0.76 0.15 0.08
Matches are distributed among these distances:
157 5 0.03
158 142 0.88
159 15 0.09
ACGTcount: A:0.19, C:0.25, G:0.29, T:0.27
Consensus pattern (157 bp):
TTTTATGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACTGGACCGAGGATTG
CCGCAGCAAGACCGACAGCACACAGAGGGGACCGGGTCGATCCCCCGCTTGCGCATTATGCCTTT
CCGGTCGGCTCAGTGCCCGCACGCTCA
Found at i:21857063 original size:26 final size:26
Alignment explanation
Indices: 21857033--21857083 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21857023 TGGCTTAGGC
21857033 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACGGAGTTCATTCCCA-GTCTAAGT
21857059 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
21857084 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:21858030 original size:26 final size:26
Alignment explanation
Indices: 21858000--21858052 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21857990 GTTGGCTTAG
21858000 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
21858026 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
21858052 G
1 G
21858053 ATTGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:21858398 original size:26 final size:26
Alignment explanation
Indices: 21858368--21858420 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21858358 GTTGACTTAG
*
21858368 GCATACGGATTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
21858394 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21858420 G
1 G
21858421 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21859065 original size:26 final size:26
Alignment explanation
Indices: 21859036--21859088 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21859026 GCATGCTTAG
*
21859036 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
**
21859062 GCATACGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21859088 G
1 G
21859089 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21859327 original size:668 final size:669
Alignment explanation
Indices: 21858086--21859565 Score: 1643
Period size: 668 Copynumber: 2.2 Consensus size: 669
21858076 GCAGCAGGAC
* * * * * * *
21858086 TAGCAGCAGGATCGACATCATGCAAGGGGTGACCGAGCCGATCCTCGGCTTGTGCATTCTACCTC
1 TAGCAGCAGGATCGACAACATG-TAGGGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTGCCTC
* *
21858151 TTC-GACTGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
65 TTCGGAC-GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
*** * * **
21858215 ATGTCTAAGCACCAGTTGGACAAAGGGTTGTGGCAGCAGGATCGGTAGTGGGATTGGTAGCACGC
129 ATGTCTAAGCACCAGTCAAACAAAGGGTTGTGGCAGCAGGACCGGTAGTGGGATCGACAGCACGC
**
21858280 AGAAGGGGACCGGGCTGATCGTCGACTTGCGCATTATGCCTCTTCGACCGGCTGAAAGACCGCAC
194 AGAAGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCT-AAAGACCG--C
* * * ** * * *
21858345 GCTCGTTTCAAGGGTTGACTTAGGCATACGGATTTCATCTCCAGTCTAAGCATACGGAGTTCATT
256 GCTCGGTGCAACGCATGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATT
** * * * * *
21858410 CCCAGTCTAAGATCAGACCGAATTGAGGGTTGCGGCAGCAGGATCGATAGCACGCAAGGGGGACT
321 CCCAGTCTAAGATCAGACCGAATCCAAGGTTACGGCAGCAAGATCGACAGCACACAAGGGGGACT
* * * * ** * *
21858475 TGGTCGATCCCCGGCTTCCGCATTCTACCTCTCTGGCCGGTTGAGCACCCGCACGCCTGTTTCGT
386 CGGGCGATCCCCGGCTTCCGCATTCTACCTCTCCGACCGACTGAGCACCCACACGCCTGTTTCAT
* ** *
21858540 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTGAACCAAGGGTTGTGGCA
451 GGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCAAGGGTTATGGCA
* *** * * * *
21858605 GTGGGACCAGCAACGTGCAGACAGGGACCGGGTTGATCCTCGGCTTACGCATTATGCCTTTTCGA
516 GCGGGACCAGCAACACACAGACAGGGACCGGGCTGATCCCCGACTTACGCATTATGCCTCTTCGA
* * * * **
21858670 TCGACTCAGCACTCGTATGCTCGTTTCATGTCTTGACTTATGCATACGAAGTTCATTCCCAGTCT
581 CCGACTCAACACCCGCATGCTCGTTTCATGGATTGACTTATGCATACGAAGTTCATTCCCAGTCT
21858735 AAGATCAGACCAGACCAAGGGTTG
646 AAGATCAGACCAGACCAAGGGTTG
* * **
21858759 TGGCAGCAGGATCGACAGCATGTAGGGGGGACCGAGCTGATCCCCGGCTTGCATATTCTGCCTCT
1 TAGCAGCAGGATCGACAACATGTAGGGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCT
* * * * * *
21858824 TCGGTCGTCTGAGTGCCCGCACGCTCGTTTCGTGGCTTAGCTTAGGCATACGGAGTTCATTCCAA
66 TCGGACGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
* ** * * *
21858889 GTCTAAGCCCCAGTCAAACTGAGGGTTGTGGTAGCAGGACCGGTAGTGGGATCGACAGTACGTA-
131 GTCTAAGCACCAGTCAAACAAAGGGTTGTGGCAGCAGGACCGGTAGTGGGATCGACAGCACGCAG
* * **
21858953 AAGAGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCTGGCTGACC-TCT-TCGACCG-
196 AAG-GGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCT-T--C-GACCGGCTAAAGACCGC
*
21859015 GCT-GAGTGC-CCGCATG-CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCAT
256 GCTCG-GTGCAACGCATGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCAT
* * * * *
21859077 TTCCAGTCTAAGATCAGATCGGATCCAAGGTTACGGTAGTAAGATCGACAGCACACAAGGGGGA-
320 TCCCAGTCTAAGATCAGACCGAATCCAAGGTTACGGCAGCAAGATCGACAGCACACAAGGGGGAC
* * * * **
21859141 TCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGTGCCCACACGTCC-GTTT
385 TCGGGC-GATCCCCGGCTTCCGCATTCTACCTCTCCGACCGACTGAGCACCCACACG-CCTGTTT
** *
21859205 CATGGGTTGGCTTAGGCATAAGGAGTTCATTGGATGTCTAAGCCCCAGCCAAACCAAGGGTTATG
448 CATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCAAGGGTTATG
* * ** **
21859270 GTAGCGGGACCAGCAGCACACAGAGGGGGACCGGGCTGATCCCCGACTTGTGCATTATGCCTCTT
513 GCAGCGGGACCAGCAACACACAGACAGGGACCGGGCTGATCCCCGACTTACGCATTATGCCTCTT
* * * * * *
21859335 CGGCCGGCTCAACGCCCGCATGCTTGTTTCATGGATTGACTTATGCATACGGAGTTCATTCCTAG
578 CGACCGACTCAACACCCGCATGCTCGTTTCATGGATTGACTTATGCATACGAAGTTCATTCCCAG
* * ***
21859400 TCTAAGATTAGACCGGACGGGGGGTTG
643 TCTAAGATCAGACCAGACCAAGGGTTG
* * * * **
21859427 TAGAAGTAGGATCGACAACACGTAGGGGGGACCG-GGTCGATCCCCGATTTGCGCATTCTGCCTC
1 TAGCAGCAGGATCGACAACATGTAGGGGGGACCGAGCT-GATCCCCGGCTTGCGCATTCTGCCTC
* * * *
21859491 -TCTGACCGACTGAGCACCCGCACGCTCGTTCCGTGGGTTGGCTTAGGCATACGGAGTTGATTCC
65 TTCGGA-CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
*
21859555 ATGTCCAAGCA
129 ATGTCTAAGCA
21859566 TACGGAGTTC
Statistics
Matches: 665, Mismatches: 131, Indels: 27
0.81 0.16 0.03
Matches are distributed among these distances:
667 9 0.01
668 431 0.65
669 6 0.01
670 5 0.01
671 3 0.00
672 176 0.26
673 28 0.04
675 3 0.00
676 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (669 bp):
TAGCAGCAGGATCGACAACATGTAGGGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCT
TCGGACGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
GTCTAAGCACCAGTCAAACAAAGGGTTGTGGCAGCAGGACCGGTAGTGGGATCGACAGCACGCAG
AAGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTAAAGACCGCGCTCG
GTGCAACGCATGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAG
TCTAAGATCAGACCGAATCCAAGGTTACGGCAGCAAGATCGACAGCACACAAGGGGGACTCGGGC
GATCCCCGGCTTCCGCATTCTACCTCTCCGACCGACTGAGCACCCACACGCCTGTTTCATGGGTT
GGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCAAGGGTTATGGCAGCGGG
ACCAGCAACACACAGACAGGGACCGGGCTGATCCCCGACTTACGCATTATGCCTCTTCGACCGAC
TCAACACCCGCATGCTCGTTTCATGGATTGACTTATGCATACGAAGTTCATTCCCAGTCTAAGAT
CAGACCAGACCAAGGGTTG
Found at i:21860653 original size:158 final size:158
Alignment explanation
Indices: 21860300--21860793 Score: 358
Period size: 158 Copynumber: 3.1 Consensus size: 158
21860290 TAAGCATATG
** * * * * ** *
21860300 GAGTTCATTCCCA-GTCTAAGATCAGACCGGA-CTGAGGGTTGCGGCATCAGGATCGGTAGCACG
1 GAGTTCATT-CCATGTCTAAGATTGGATCGGATC-GAGGGTTACAGCAGCAGGATCGACAGCACA
* * * * * * * * * *
21860363 CAGGGGGGACC-ACGTCGATCCTCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCGTA
64 CAGGGGGGACCGA-GCCAATCCCCAGCTTGCGCATTATACCTCTCCGGCCGGCTGAACGCCCGCA
* * * **
21860427 CG-TCCATTTCATGGGTTGGCTTAGGCATAGG
128 CGCT-CGTTTCGTGGGTTGACTTAGGCATACA
**** * * *** * *
21860458 GAGTTCATTCCATGTCTAAG-CCCCAGCCAGGCT-GAGGGTTGTGGCAGCGGGA-CAGGCAGCAC
1 GAGTTCATTCCATGTCTAAGATTGGA-TC-GGATCGAGGGTTACAGCAGCAGGATC-GACAGCAC
** * * **
21860520 ACAGAGGGGGACCGAGCCGGTCCCCGGCTTGCGCATTATGCC-CTTTGGCCGGCTGAACGCCCGC
63 ACAG-GGGGGACCGAGCCAATCCCCAGCTTGCGCATTATACCTCTCCGGCCGGCTGAACGCCCGC
21860584 ACGCTCGTTTCGTGGGTTGACTTAGGCATACA
127 ACGCTCGTTTCGTGGGTTGACTTAGGCATACA
* * *
21860616 TAGTTCATTCC-TAGTCTAAGATTGGATCGGATCGAGGGTTACAGTAGCAGGATCGACAGCACCC
1 GAGTTCATTCCAT-GTCTAAGATTGGATCGGATCGAGGGTTACAGCAGCAGGATCGACAGCACAC
* * * * * * *
21860680 AGGGGGGACCGAGTCAATTCTCAGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCTGCACG
65 AGGGGGGACCGAGCCAATCCCCAGCTTGCGCATTATACCTCTCCGGCCGGCTGAACGCCCGCACG
* * *
21860745 CTCGTTTTGTGGGTTGGCTTAGGCATACG
130 CTCGTTTCGTGGGTTGACTTAGGCATACA
21860774 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
21860794 CATACGAAGT
Statistics
Matches: 265, Mismatches: 57, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
157 39 0.15
158 189 0.71
159 36 0.14
160 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCATGTCTAAGATTGGATCGGATCGAGGGTTACAGCAGCAGGATCGACAGCACACA
GGGGGGACCGAGCCAATCCCCAGCTTGCGCATTATACCTCTCCGGCCGGCTGAACGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACA
Found at i:21860804 original size:26 final size:26
Alignment explanation
Indices: 21860767--21860819 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21860757 GTTGGCTTAG
*
21860767 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
21860793 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21860819 G
1 G
21860820 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21861115 original size:13 final size:13
Alignment explanation
Indices: 21861083--21861117 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
21861073 TACGCATTAT
* *
21861083 GCCTCTCCGACTA
1 GCCTCTTCGACCA
21861096 GCCTCTTCGACCA
1 GCCTCTTCGACCA
21861109 GCCTCTTCG
1 GCCTCTTCG
21861118 GCCGACTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.11, C:0.46, G:0.17, T:0.26
Consensus pattern (13 bp):
GCCTCTTCGACCA
Found at i:21861190 original size:26 final size:26
Alignment explanation
Indices: 21861160--21861212 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21861150 GTTGACTTAG
*
21861160 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21861186 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21861212 G
1 G
21861213 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21862027 original size:26 final size:26
Alignment explanation
Indices: 21861991--21862041 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21861981 GTTGACTTAG
*
21861991 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
21862017 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
21862042 GGATCGGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21862241 original size:343 final size:342
Alignment explanation
Indices: 21861552--21863071 Score: 1415
Period size: 343 Copynumber: 4.3 Consensus size: 342
21861542 GCACGTAAGT
* * * * * * *
21861552 GGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTC
1 GGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGCTCAGCACCCGCACGCTC
* * * * * * * * * *
21861617 GTTTCATGGGCTGGCTTAGGCATACAGAGTTCAT-TCAATGCCTAAGCATACGGAGTTCATTCCT
66 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCC
* * * *
21861681 AGTCTAAGATCAG-TCCGGACCGAGGGTTACGGTAGTAGGACAAGTAGCAGGATCTACAGCATGC
130 AGTCTAAGATCAGAT-CGGACCGAGGGTTGCGGCAGCAGG---A-T--C-GG---T--AGCACGC
* * * * * * * * ** * *
21861745 ATGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCT-TCGACGGGCTGAATGCCTGCAC
182 AGGGGGGATC-GGGCGATCCCCGACTTGCGCATTCTACCTCTCT-GGCCGGCTGAGCGCCCGTAC
* ** * ** *
21861809 ACTCGTTTTATGGATTGGCTTATGCATAGGGAGTTCATTCCATGTCTATGCCCCACCCGGAAT-G
245 GCTCGTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGG-ATCG
* *
21861873 AGGGTTGTGGCAGCGAGATCGACAGCACGCA-ACG
309 AGGGTTGTGGCAACGAGACCGACAGCACGCAGA-G
** *
21861907 GGGGACCAGGTTGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGCTGAGCACCCGCACGCTC
1 GGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGCTCAGCACCCGCACGCTC
* *
21861972 GTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCA
66 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCA
* * * * * *
21862037 GTCTAGGATCGGATCGGATCAAGGGTTGCGACAGCAGGATCGGTAGCACGTAGGGGGGATCGGGT
131 GTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGGATCGGG-
* * * * *
21862102 CGATCCCCGACTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGTGCGCCCGTTTCGTGGGT
195 CGATCCCCGACTTGCGCATTCTACCTCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGAT
* ** *
21862167 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGA-CTGAGGGTTGTGGCAATG
260 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGGATC-GAGGGTTGTGGCAACG
*
21862231 AGACCGACAGCACGAAGAG
324 AGACCGACAGCACGCAGAG
* ** * * * * *
21862250 GGGGACCGGGCCGATCCCCACCTTACGCATTATGCCTCTTCGGCCAGCTCAGCGCCTGTACGCTC
1 GGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGCTCAGCACCCGCACGCTC
* * * **
21862315 GTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCTCAGTCTAAGCAT-TTGAAGTTCATTCCC
66 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAG-AGTTCATTCCC
* * ** * *
21862379 AATCTAAGATCAGAT-GGAACCGAGGGTTGCGGCAGTAGGATCGACA-CTACGCAGGGGGGACCA
130 AGTCTAAGATCAGATCGG-ACCGAGGGTTGCGGCAGCAGGATCGGTAGC-ACGCAGGGGGGATCG
* *
21862442 GGCTGATCCCCGACTTGCGCATTCTACCTCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTG
193 GGC-GATCCCCGACTTGCGCATTCTACCTCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTG
* *
21862507 GATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCTAGCTGGATCGAGGGTTGTGGTAG
257 GATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGGATCGA-GG--GT--T-G
* *
21862572 TAGGACTGACAGCGGGATCGACAGCACGCAGAG
316 T-GG-C--A-A-CGAGACCGACAGCACGCAGAG
* *
21862605 GGGGACCAGGCTGATCCTCC-GCTTACGCATTATGCCTCTCCGTCTGGCCTCTCCGACCGGCTGA
1 GGGGACCAGGCCGATCC-CCGGCTTACGCATTATGCCTCT-C--C--G-------G-CCGGCTCA
* * *
21862669 GCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCGCCAGTCTAAGCATAC
52 GCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
* * *
21862734 AGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGC
117 AGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGC
* * * * * * * * *
21862799 AAGAGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTCCGGTCGGCTGAGTGCCCATATG
182 AGGGGGGATCGGG-CGATCCCCGACTTGCGCATTCTACCTCTCTGGCCGGCTGAGCGCCCGTACG
* *
21862864 CTCGTTTCCTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGTCGGATCGAG
246 CTCGTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGGATCGAG
* * * *
21862929 TGTTGTGGCAGCGAGACCGGCAGCACACAGAG
311 GGTTGTGGCAACGAGACCGACAGCACGCAGAG
* * * * **
21862961 GGGGACC-GAGCCGATCCCCGTCTTGCGCATTATGCCTCTTCGTCCGGCTCAGCACCCATACGCT
1 GGGGACCAG-GCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGCTCAGCACCCGCACGCT
* * *
21863025 CATTTCATGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAG
65 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
21863072 ATCGGACTGG
Statistics
Matches: 965, Mismatches: 156, Indels: 100
0.79 0.13 0.08
Matches are distributed among these distances:
342 8 0.01
343 450 0.47
344 5 0.01
345 1 0.00
346 2 0.00
348 3 0.00
349 3 0.00
350 2 0.00
351 3 0.00
352 1 0.00
353 2 0.00
354 1 0.00
355 190 0.20
356 53 0.05
358 2 0.00
360 2 0.00
361 2 0.00
362 2 0.00
363 1 0.00
365 2 0.00
367 2 0.00
368 224 0.23
369 4 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (342 bp):
GGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGCTCAGCACCCGCACGCTC
ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCA
GTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGGATCGGGC
GATCCCCGACTTGCGCATTCTACCTCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGATT
GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGGATCGAGGGTTGTGGCAACGAG
ACCGACAGCACGCAGAG
Found at i:21862738 original size:26 final size:26
Alignment explanation
Indices: 21862702--21862754 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21862692 GTTGACTTAG
*
21862702 GCATACGGAGTTCA-TCGCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
21862728 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21862754 G
1 G
21862755 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21863250 original size:158 final size:154
Alignment explanation
Indices: 21862735--21863270 Score: 431
Period size: 158 Copynumber: 3.4 Consensus size: 154
21862725 TAAGCATACA
* * * * *
21862735 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCA
1 GAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAAGGTTGTGGCAGCAGGATCGATAGCACGCA
* * * * * * * *
21862800 AGAGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTCCGGTCGGCTGAGTGCCCATATGC
66 GGGGGGA-CCGGCCGAT-CCCAGCTTGCACATTCTGCCTCTCC-GTCGGCTAAGCGCCCATAAGC
*
21862865 TCGTTTCCTGGATTGGCTTAGGCATAGG
128 TCGTTTCTTGG-TTGGCTTAGGCATAGG
* * * * **
21862893 GAGTTCATT-CCATGTCTAA-ACCCCAG-TCGGATCG-AGTGTTGTGGCAGC-GAGACCGGCAGC
1 GAGTTCATTCCCA-GTCTAAGA--CCAGACCAGACCGAAG-GTTGTGGCAGCAG-GATCGATAGC
* * * * * * *
21862953 ACACAGAGGGGGACCGAGCCGATCCCCGTCTTGCGCATTATGCCTCTTCGTCCGGCTCAGCACCC
61 ACGCAG-GGGGGACCG-GCCGATCCCAG-CTTGCACATTCTGCCTCTCCGT-CGGCTAAGCGCCC
* * * * * *
21863018 ATACGCTCATTTCATGGGTTGACATAGGCATACG
122 ATAAGCTCGTTTC-TTGGTTGGCTTAGGCATAGG
* * ** * *
21863052 GAGTTCATTCCCAGTCTAAGATCGGACTGGACC-AAGGGTTGTGGCAGTAGGATCGATAGCACGT
1 GAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAA-GGTTGTGGCAGCAGGATCGATAGCACGC
* **
21863116 AGGGGGGACCAGGCCGATCCTTAGCTTGCACATTCTGCCTCTCCGATCGGCTAAGCGCCCGCAAG
65 AGGGGGGACC-GGCCGATCC-CAGCTTGCACATTCTGCCTCTCCG-TCGGCTAAGCGCCCATAAG
21863181 CTCGTTTCGTTGGTTGGCTTAGGCATAGG
127 CTCGTTTC-TTGGTTGGCTTAGGCATAGG
* *
21863210 GAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAAGGTTGTGGCAGCGGGATCGATAGCA
1 GAGTTCATTCCCA-GTCTAAG-ACCAGACCAGACCGAAGGTTGTGGCAGCAGGATCGATAGCA
21863271 GGTAGTGTTG
Statistics
Matches: 294, Mismatches: 62, Indels: 44
0.74 0.16 0.11
Matches are distributed among these distances:
157 9 0.03
158 165 0.56
159 112 0.38
160 8 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (154 bp):
GAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAAGGTTGTGGCAGCAGGATCGATAGCACGCA
GGGGGGACCGGCCGATCCCAGCTTGCACATTCTGCCTCTCCGTCGGCTAAGCGCCCATAAGCTCG
TTTCTTGGTTGGCTTAGGCATAGG
Found at i:21864213 original size:26 final size:26
Alignment explanation
Indices: 21864174--21864226 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21864164 GTTGACTTAG
21864174 GCATACGGAATTCA-TCCCTAGTCTAA
1 GCATACGGAATTCATTCCC-AGTCTAA
*
21864200 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
21864226 G
1 G
21864227 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:21864704 original size:26 final size:26
Alignment explanation
Indices: 21864675--21864727 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21864665 GTTGGCTTAG
* *
21864675 GCATACAGAGTTTATTCC-ATGTCTAA
1 GCATACAGACTTCATTCCTA-GTCTAA
21864701 GCATACAGACTTCATTCCTAGTCTAA
1 GCATACAGACTTCATTCCTAGTCTAA
21864727 G
1 G
21864728 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATACAGACTTCATTCCTAGTCTAA
Found at i:21865083 original size:26 final size:26
Alignment explanation
Indices: 21865054--21865106 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21865044 GGTAGATTTG
21865054 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21865080 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21865106 G
1 G
21865107 ATGGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21865357 original size:159 final size:158
Alignment explanation
Indices: 21865176--21865551 Score: 463
Period size: 158 Copynumber: 2.4 Consensus size: 158
21865166 TCGGTTGAGG
* *
21865176 GCCCGAACGCTCGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC
1 GCCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAAC
* ** * * *
21865241 CGAATTGAGGGTTGTGGCAGCGGGACCGATAGGACGCAGAGGGGG-TACGGGCCGATCCCCGACT
66 CGAACTGAGGGTTGCAGCAGCAGGACCGACAGCACGCAG-GGGGGAT-CGGGCCGATCCCCGACT
*
21865305 TGCGCATTATGCCTCTTC-GGTCAGCTCAGC
129 TGCGCATTATGCCT-TTCTGGCCAGCTCAGC
* *****
21865335 GCCCGCACGCTCGTTTCGTGGGTT-GACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATTGG
1 GCCCGCACGCTCGTTTCGTGGGTTAG-CTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCA
* * * *
21865398 ACCGGACTGAGGGTTGCAGCAGTAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGACT
64 ACCGAACTGAGGGTTGCAGCAGCAGGACCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACT
* * *
21865463 TGCGCATTCTGCCTTTCTGGCCTGCTGAGC
129 TGCGCATTATGCCTTTCTGGCCAGCTCAGC
* *
21865493 GCCCGCACACTCGTTTCGTGGGTTACCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 GCCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
21865552 ACACGGAGTC
Statistics
Matches: 185, Mismatches: 26, Indels: 13
0.83 0.12 0.06
Matches are distributed among these distances:
157 6 0.03
158 94 0.51
159 82 0.44
160 3 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GCCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAAC
CGAACTGAGGGTTGCAGCAGCAGGACCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTG
CGCATTATGCCTTTCTGGCCAGCTCAGC
Found at i:21866294 original size:26 final size:26
Alignment explanation
Indices: 21866246--21866298 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21866236 GTTGACTTAG
*
21866246 GCATACGGAGTTCATCCTGAGTCTAA
1 GCATACGGAGTTCATCCTCAGTCTAA
*
21866272 GCATATGGAGTTCATTCC-CAGTCTAA
1 GCATACGGAGTTCA-TCCTCAGTCTAA
21866298 G
1 G
21866299 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAGTCTAA
Found at i:21866618 original size:26 final size:26
Alignment explanation
Indices: 21866588--21866640 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21866578 GTTGGCTTAG
21866588 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21866614 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21866640 G
1 G
21866641 ATCAAATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21867202 original size:26 final size:26
Alignment explanation
Indices: 21867166--21867218 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21867156 GTTGACTTAG
21867166 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
21867192 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21867218 G
1 G
21867219 ATCGGACAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21867622 original size:159 final size:158
Alignment explanation
Indices: 21867192--21867685 Score: 492
Period size: 159 Copynumber: 3.1 Consensus size: 158
21867182 TCCAGTCTAA
* *
21867192 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGGATCGAGGGTTGCGACAGTAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCA-GATCGAGGGTTGCGACAGCAGGATCGGC
** * * * *
21867256 AGCATGTA-GGGGGGATCGGGCCAATCCCCGACTTGCGCACTCTGCCTCTCCGGCCGGCTGAGCA
65 AGCACATAGGGGGGGAT-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCA
* * *
21867320 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * * * *
21867350 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAACCAGATCGAGGGTTGTGACAACAGGACCGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCAGATCGAGGGTTGCGACAGCAGGATCGGC
* * ** * ** * ** * *
21867414 AGCACATAGAGGGGGATGGAACCGATCCTTGGTTTGCATATTATGCCTCTTTGACCTGCTCAGCA
65 AGCACATAGGGGGGGATGG-GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCA
* *
21867479 CCCGCACGCTCATTTCGTGGGTTGACTTAT
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * **
21867509 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGCAATAGCAGGATTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTGCGACAGCAGGATCGGCA
* * *
21867574 GCACATAGGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAATCGGCTGAGCAC
66 GCACATAGGGGGGGA-TGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCAC
* *
21867639 CCACATGCTCGTTTCGTGGGTT-AGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGA-CTTAG
* *
21867668 GCATACAGATTTCATTCC
1 GCATACGGAGTTCATTCC
21867686 ATGTCTTAGC
Statistics
Matches: 262, Mismatches: 67, Indels: 13
0.77 0.20 0.04
Matches are distributed among these distances:
157 3 0.01
158 57 0.22
159 196 0.75
160 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTGCGACAGCAGGATCGGCA
GCACATAGGGGGGGATGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:21868915 original size:157 final size:157
Alignment explanation
Indices: 21868469--21869129 Score: 541
Period size: 159 Copynumber: 4.2 Consensus size: 157
21868459 GTTTTTCGGT
* * * * * * *
21868469 AGTAGGATCGACAGCACGTAGAGGGGACCGAGCCAATCCTCGAG-TTACGCATTTTGCCTC-TCC
1 AGTAGGATCGACAGCACGCAGGGGGGACCG-GCCGATCCCCG-GCTTGCGCATTATGCCTCTTCG
* * * * * * * * ** *
21868532 AGCCGACTGAGCGCCCGTACACCCGTTTTGTGGGTTGGCTTAGGCATTGGGAGTTCATT-CCATG
64 A-CCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-G
* **
21868596 TCTAAGCCCCAG-TTGGACCGAGGGTTGTGGC
127 TCTAAG-ACCAGATCAGACCGAGGGTTGTGGC
** * * ** * *
21868627 AGCGGGATC-AGCAGCACGTAGAGAGGGACCCGATCGATCCCCGACTTGCGAATTATGCCTCTTC
1 AGTAGGATCGA-CAGCACGCAG-GGGGGA-CCGGCCGATCCCCGGCTTGCGCATTATGCCTCTTC
** * ** *
21868691 GATTGGCTCAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGT
63 GACCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGT
***
21868756 CTAAGATTGGATCAGACCGAGGGTTGTGGC
128 CTAAGACCAGATCAGACCGAGGGTTGTGGC
*
21868786 AGTAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCG-ATTCTGCCTC-TCTG
1 AGTAGGATCGACAGCACGCAGGGGGGACC-GGCCGATCCCCGGCTTGCGCATTATGCCTCTTC-G
* * * * * * *
21868849 GCCAGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGT
64 ACCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GT
* * **
21868913 CTAAGCCCTAG-CCAGATAGAGGGTTGTGGC
128 CTAAGACC-AGATCAGACCGAGGGTTGTGGC
* * *** *
21868943 AGCAGGACCGGTGGCACGCAGAGGGGGACCGGGCCGATCCCAGGCTTGCGCATTATGCCTCTTCG
1 AGTAGGATCGACAGCACGCAG-GGGGGACC-GGCCGATCCCCGGCTTGCGCATTATGCCTCTTCG
* * * * *
21869008 ACCGGCTCAGCGCCCGCACTCTCATTTCATGAGTTGACTTATGCATACGAAGTTTATTCCCAGTC
64 ACCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTC
* * *
21869073 TAAGATCAGA-CTGGATCGAGGGTTGTGGC
129 TAAGACCAGATC-AGACCGAGGGTTGTGGC
21869102 AGTAGGATCGACAGCACGCAGGGGGGAC
1 AGTAGGATCGACAGCACGCAGGGGGGAC
21869130 TGAGGGTTGT
Statistics
Matches: 394, Mismatches: 91, Indels: 36
0.76 0.17 0.07
Matches are distributed among these distances:
156 5 0.01
157 97 0.25
158 76 0.19
159 201 0.51
160 15 0.04
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
AGTAGGATCGACAGCACGCAGGGGGGACCGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGAC
CGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTA
AGACCAGATCAGACCGAGGGTTGTGGC
Found at i:21869000 original size:316 final size:317
Alignment explanation
Indices: 21868469--21869129 Score: 828
Period size: 316 Copynumber: 2.1 Consensus size: 317
21868459 GTTTTTCGGT
* * * *
21868469 AGTAGGATCGACAGCACGTAGAGGGGACCGAGCCAATCCTCGAGTTACGCATTTTGCCTCTCCAG
1 AGTAGGATCGACAGCACGCAGGGGGGACCGAGCCAATCCCCGAGTTACGCATTCTGCCTCTCCAG
* * *
21868534 CCGACTGAGCGCCCGTACACCCGTTTTGTGGGTTGGCTTAGGCATTGGGAGTTCATTCCATGTCT
66 CCGACTGAGCGCCCGTACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
*** * * * * *
21868599 AAGCCCCAGTTGGACCGAGGGTTGTGGCAGCGGGATCAGCAGCACGTAGAGAGGGACCCGATCGA
131 AAGCCCCAGCCAGACAGAGGGTTGTGGCAGCAGGACCAGCAGCACGCAGAGAGGGACCCGACCGA
* ** ** * *
21868664 TCCCCGACTTGCGAATTATGCCTCTTCGATTGGCTCAGCACCCGCACGCTTGTTTCGTGGGTTGA
196 TCCCAGACTTGCGAATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCATTTCATGAGTTGA
**
21868729 CTTAGGCATACAAAGTTCATTCCCAGTCTAAGATTGGA-TCAGACCGAGGGTTGTGGC
261 CTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACT-AGACCGAGGGTTGTGGC
* * *
21868786 AGTAGGATCGACAGCACGCAGGGGGGACC-AGGCCGATCCCCG-GCTTGCG-ATTCTGCCTCTCT
1 AGTAGGATCGACAGCACGCAGGGGGGACCGA-GCCAATCCCCGAG-TTACGCATTCTGCCTCTCC
* * *
21868848 GGCC-AGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
64 AGCCGA-CTGAGCGCCCGTACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* * * ** * * *
21868912 TCTAAGCCCTAGCCAGATAGAGGGTTGTGGCAGCAGGACCGGTGGCACGCAGAGGGGGACCGGGC
128 TCTAAGCCCCAGCCAGACAGAGGGTTGTGGCAGCAGGACCAGCAGCACGCAGAGAGGGACCCGAC
* * * *
21868977 CGATCCCAGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACTCTCATTTCATGAGT
193 CGATCCCAGACTTGCGAATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCATTTCATGAGT
* * * * *
21869042 TGACTTATGCATACGAAGTTTATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGGC
258 TGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGTGGC
21869102 AGTAGGATCGACAGCACGCAGGGGGGAC
1 AGTAGGATCGACAGCACGCAGGGGGGAC
21869130 TGAGGGTTGT
Statistics
Matches: 293, Mismatches: 47, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
315 1 0.00
316 251 0.86
317 41 0.14
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (317 bp):
AGTAGGATCGACAGCACGCAGGGGGGACCGAGCCAATCCCCGAGTTACGCATTCTGCCTCTCCAG
CCGACTGAGCGCCCGTACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
AAGCCCCAGCCAGACAGAGGGTTGTGGCAGCAGGACCAGCAGCACGCAGAGAGGGACCCGACCGA
TCCCAGACTTGCGAATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCATTTCATGAGTTGA
CTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGTGGC
Found at i:21869770 original size:26 final size:26
Alignment explanation
Indices: 21869734--21869786 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21869724 GTTGGCTTAG
21869734 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
21869760 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
21869786 G
1 G
21869787 GTTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:21870960 original size:158 final size:158
Alignment explanation
Indices: 21870477--21870982 Score: 490
Period size: 158 Copynumber: 3.2 Consensus size: 158
21870467 CATCCCCAGT
* * * * *
21870477 CTTA-GCATATGGAGTTCATTCC-TAGTCTATGATC-GAATCGGACCGAGGGTCGCGACAGCAGG
1 CTTAGGCATACGGAGTTCATTCCAT-GTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCAGG
* * * * *
21870539 ATCGACAGCATG-CAGGGGGTACCGGGCTGATTCCC-GGCTTACGCATTCTGCCTCT-TCGGCCG
64 ATCGACAGCACGAAAGGGGG-ACCGGGCCGA-TCCCTGGCTTGCGCATTCTGCCTCTCT-GACCG
* * * *
21870601 GTTGAACGCCCGCATGCCCGTTTCGTGGGTTGG
126 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGG
* ** * * * **
21870634 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCGGATCAAGGGTTGTGGCAGTGGGA
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAGATC-AGACCGGACCGAGGGTTGCGGCAGCAGGA
* * * ** *
21870698 CCGGCAGCAC-ATAGAGGGGGACCGGGCCGATCCCTGACTTGCGCATTAGGCCTCTCCGACCGGC
65 TCGACAGCACGA-A-AGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGACCGGC
* * * *
21870762 TCAGTGCCCGCACACTCGTTTCGTGGGTTGA
128 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGG
* * * *
21870793 CTTATGCATACAGAGTTCATTCC-TAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAACAGGA
1 CTTAGGCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGA
** * * *
21870857 TCGACAGCACGAAAAAGGGACCGGGCCCATCCCTGGCTTGCACATTCTGCCTCTCTGACCTGCTG
65 TCGACAGCACGAAAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGACCGGCTG
*
21870922 AGCACCCGCACGCTCGTTTCGTGGGTTGG
130 AGCGCCCGCACGCTCGTTTCGTGGGTTGG
21870951 CTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAG
21870983 CATACGGAGT
Statistics
Matches: 275, Mismatches: 61, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
157 4 0.01
158 151 0.55
159 112 0.41
160 8 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
CTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGAT
CGACAGCACGAAAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGACCGGCTGA
GCGCCCGCACGCTCGTTTCGTGGGTTGG
Found at i:21870992 original size:26 final size:26
Alignment explanation
Indices: 21870956--21871008 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21870946 GTTGGCTTAG
21870956 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
21870982 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
21871008 G
1 G
21871009 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:21872817 original size:197 final size:197
Alignment explanation
Indices: 21872432--21872826 Score: 463
Period size: 197 Copynumber: 2.0 Consensus size: 197
21872422 ACGCATTCTA
* * * * * *
21872432 CCTCTTCGATCGGTTGAGTGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCCGATCGGTTGAGCGCCCACACGCTCCTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* ** * ** ** *
21872497 TCCATGTTTAAGCATACAGAGTTAATTCCCAGTCTATGATCGGACCGGACTGAGGGTTGCAGCAG
66 CCCATGTCGAAGCATACAGAGTTAATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTACAGCAG
* *
21872562 CAGGATCGACAGCACGCAGGGGGGACTGGGTCGATCCCCGGCTTACACATTATGCCTCTCCAGTC
131 CAGGATCGACAGCACGCAGGGGGGACTGGGTCGATCCCCGACTTACAAATTATGCCTCTCCAGTC
21872627 GG
196 GG
* * *
21872629 CCTCTCCGGTCGGTTGAGCGTCCACACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGATCGGTTGAGCGCCCACACGCTCCTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * *
21872694 CCCCA-GTCGAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTACGGTA
66 -CCCATGTCGAAGCATACAGAGTTAATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTACAGCA
* ** ** * * *
21872758 GTAGGATCGGTAGCACGCAGGGGGGA-TCGGG-CTGATCCCCGACTTGGAAATTTTGCCTCTTCG
130 GCAGGATCGACAGCACGCAGGGGGGACT-GGGTC-GATCCCCGACTTACAAATTATGCCTCTCCA
21872821 GTCGG
193 GTCGG
21872826 C
1 C
21872827 TGAGCGTCGG
Statistics
Matches: 164, Mismatches: 31, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
196 2 0.01
197 159 0.97
198 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (197 bp):
CCTCTCCGATCGGTTGAGCGCCCACACGCTCCTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
CCCATGTCGAAGCATACAGAGTTAATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTACAGCAG
CAGGATCGACAGCACGCAGGGGGGACTGGGTCGATCCCCGACTTACAAATTATGCCTCTCCAGTC
GG
Found at i:21874024 original size:159 final size:158
Alignment explanation
Indices: 21873660--21874027 Score: 348
Period size: 159 Copynumber: 2.3 Consensus size: 158
21873650 CCCCAGTCAA
* ** * * ** *
21873660 GCATATGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGCAGGATTGGTA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAACAGGACCGGCA
* * * * * * *
21873725 GCACAGAGGGGGGATCAGGCTGATCCTCGGCTAGAGCATTCTACCTCTCCGGCCGACTGAGCGCC
66 GCACAGAGGGGGGACCAGGCTGATACTCGACTAGAGCATTATACCTCTCCAGCCGACTCAACGCC
* * * *
21873790 CGCACGCCCGTTTAGTGGGTTGGCTTAG
131 CACACGCCCATTTAATGGGTTGACTTAG
* * * ** * **
21873818 GCATAGGGAGTTCATT-CCATGTCTAA-ACCCCAG-TCAGATTGAAGGTTGTGGCAATGGGACCG
1 GCATATGGAGTTCATTCCCA-GTCTAAGA--TCAGATCGGACCGAGGGTTGTGGCAACAGGACCG
* * * * * *
21873880 GCAGCAC-GCAGAGGGGGACCAGGCTGATACTCGATTTGCGCATTATGCCTCTCCAGTCGGCTCA
63 GCAGCACAG-AG-GGGGGACCAGGCTGATACTCGACTAGAGCATTATACCTCTCCAGCCGACTCA
*
21873944 ACGCCCACACGCTCATTTAATGGGTTGACTTAG
126 ACGCCCACACGCCCATTTAATGGGTTGACTTAG
*
21873977 GCATATGGAGTTCTTTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGG
21874028 TAGCAGGATC
Statistics
Matches: 161, Mismatches: 41, Indels: 15
0.74 0.19 0.07
Matches are distributed among these distances:
157 4 0.02
158 49 0.30
159 104 0.65
160 4 0.02
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAACAGGACCGGCA
GCACAGAGGGGGGACCAGGCTGATACTCGACTAGAGCATTATACCTCTCCAGCCGACTCAACGCC
CACACGCCCATTTAATGGGTTGACTTAG
Found at i:21874174 original size:159 final size:159
Alignment explanation
Indices: 21873781--21874197 Score: 419
Period size: 159 Copynumber: 2.6 Consensus size: 159
21873771 CTCCGGCCGA
* * *
21873781 CTGAGCGCCCGCACGCCCGTTTAGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAAC
1 CTGAGCGCCCGCACGCTCGTTTAGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
* * * * * * * * *
21873846 CCCAGTCAGATTGAAGGTTGTGGCAATGGGACCGGCAGCACGCAGAGGGGGACCAGGCTGATACT
66 CCCAGTCGGACTGAAGGTTGTGGCAGTAGGATCGACAACACGCAGAGGGGGACCAGGCCGATACC
* *
21873911 CGATTTGCGCATTATGCCTCTCCAGTCGG
131 CGATTTACGCATTATGCCTCTCCACTCGG
* * * * * * *
21873940 CTCAACGCCCACACGCTCATTTAATGGGTTGACTTAGGCATATGGAGTTCTTTCCCA-GTCTAAG
1 CTGAGCGCCCGCACGCTCGTTTAGTGGGTTGGCTTAGGCATATGGAGTTCATT-CCATGTCTAAG
** * * * * * *
21874004 -ATCAGATCGGACCGAGGGTTGTGGTAGCAGGATCGACAACACGCAG-GGGGGACCGGGCCGATC
65 CCCCAG-TCGGACTGAAGGTTGTGGCAGTAGGATCGACAACACGCAGAGGGGGACCAGGCCGATA
* * **
21874067 CCCGGTTTACGCATTCTGCCTCTTTGACT-GG
129 CCCGATTTACGCATTATGCCTC-TCCACTCGG
* * * *
21874098 CTTGAGCGCCCGCACGTTCGTTTCGTTGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAG
1 C-TGAGCGCCCGCACGCTCGTTTAGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
* *
21874163 CCCCAGCCGGACTGAAGCTTGTGGCAGTAGGATCG
65 CCCCAGTCGGACTGAAGGTTGTGGCAGTAGGATCG
21874198 GCAATGGTAT
Statistics
Matches: 200, Mismatches: 52, Indels: 12
0.76 0.20 0.05
Matches are distributed among these distances:
158 41 0.20
159 153 0.76
160 6 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
CTGAGCGCCCGCACGCTCGTTTAGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
CCCAGTCGGACTGAAGGTTGTGGCAGTAGGATCGACAACACGCAGAGGGGGACCAGGCCGATACC
CGATTTACGCATTATGCCTCTCCACTCGG
Found at i:21874786 original size:158 final size:156
Alignment explanation
Indices: 21874298--21874821 Score: 516
Period size: 158 Copynumber: 3.3 Consensus size: 156
21874288 TGCTCACACA
* * **
21874298 CTCATTTCACGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAG
1 CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAG
* * * **
21874363 GGTTGCGGCAACAGGATCGACAGCATGCAGGGGGGATCGGGCTGATCCCCGACTTGCGTATCCTG
65 GGTTGCGGCAACAGGATCGACAGCATGAAGGGGGGATCGGGCCGATCCCCG-CTTGCGCATTATG
* * **
21874428 GCTCTCCGGTCGACTGAGCGCCAACACGC
129 CCTCTCCGGTCGGCTGAGCGCCTGCAC-C
* ** *
21874457 C-CATTTCATGGGTT-AGCTTAGGCATAAGGAGTTCATTCCAAGTCTAAGCCCCAG-TCAGACCG
1 CTCATTTCATGGGTTGA-CTTAGGCATACGGAGTTCATTCC-AGTCTAAG-ATCAGACCAGACCG
* *** *
21874519 AGGGTTGTGGCAGTGGGATC-AGCAGCACGAAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCAT
63 AGGGTTGCGGCAACAGGATCGA-CAGCATGAAG-GGGGGATCGGGCCGATCCCC-GCTTGCGCAT
** * * * *
21874583 TATGCCTCTTAGGTCAGCTCAGCACCTGCACG
125 TATGCCTCTCCGGTCGGCTGAGCGCCTGCACC
* *
21874615 CTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTGCCAGTCTAAGATCAGACCAGACTGAG
1 CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAG
* * * * * * *
21874680 GGTTACGACAACAAGATCGATAGCATGTAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTTTG
65 GGTTGCGGCAACAGGATCGACAGCATGAAGGGGGGATCGGGCCGATCCCC-GCTTGCGCATTATG
* *
21874745 CCTCTCCGGCCGGTTGAGCGCCTGCACC
129 CCTCTCCGGTCGGCTGAGCGCCTGCACC
** * * *
21874773 CTTGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
1 CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAG
21874822 CATACGGAGT
Statistics
Matches: 292, Mismatches: 61, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 7 0.02
158 165 0.57
159 115 0.39
160 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (156 bp):
CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGG
GTTGCGGCAACAGGATCGACAGCATGAAGGGGGGATCGGGCCGATCCCCGCTTGCGCATTATGCC
TCTCCGGTCGGCTGAGCGCCTGCACC
Found at i:21874831 original size:26 final size:26
Alignment explanation
Indices: 21874795--21874846 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21874785 GTTGGCTTAG
*
21874795 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21874821 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21874847 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21875571 original size:26 final size:26
Alignment explanation
Indices: 21875519--21875571 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21875509 GTTGACTTAG
* *
21875519 GCATATGGAGTTCATCCCCGGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21875545 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21875571 G
1 G
21875572 ATCGAATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21877156 original size:159 final size:156
Alignment explanation
Indices: 21876794--21877287 Score: 456
Period size: 159 Copynumber: 3.1 Consensus size: 156
21876784 CCTAGTCTAA
* * * * * *
21876794 GCATGCGGAGCTCATTCCTAGTCTAGGATCGGATCGGATCGAGGGTTGCGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTG-GGTAATAGGATCGACA
* * * * * *
21876859 GCATACAG-GGGGGACCGGGTAGATCCCAGGCTTATGCATTCTGCCTCTCCGGCCGATTGAGCGC
65 GCATGCAGAGGGGGACTGGGTCGATCCC-GGCTTACGCATTCTGCCTCTCCGGCAG-CTGAGCGC
*
21876923 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * *
21876952 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCGGACCGAGGGTTGTGGTAATGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-TCGGACCGAGGGTTG-GGTAATAGGATCGA
* * * *
21877015 CAGCATGCAGAGGGGGACTGGGTCGATCCTCGGCTTACGCATTATGCCTCTTCGGTCAGCTCAGT
63 CAGCATGCAGAGGGGGACTGGGTCGATCC-CGGCTTACGCATTCTGCCTCTCCGG-CAGCTGAGC
* * *
21877080 GCCCGAACGCTCGTTTCATGGGTTGACTTAG
126 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * ***
21877111 GCATACGAAGTTCATTCCCAATCTAAGATCGGATCAGACCAAGGGTTGCACAAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGGGTAA-TAGGATCGACA
* * * * * * *
21877176 ACATGC-GAGGGGGGACTGGGCCGGTCCCCGGCTTCCGCATTCTGCCTCTCCGACCGGCAGAGCG
65 GCATGCAGA-GGGGGACTGGGTCGAT-CCCGGCTTACGCATTCTGCCTCTCCG-GCAGCTGAGCG
* *
21877240 CCCGCACCCTCCTTTCGTGGGTTGGCTTAG
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
21877270 GCATACGGTGTTCATTCC
1 GCATACGGAGTTCATTCC
21877288 ATGTCCTAAG
Statistics
Matches: 265, Mismatches: 60, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.02
158 56 0.21
159 195 0.74
160 10 0.04
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGGGTAATAGGATCGACAG
CATGCAGAGGGGGACTGGGTCGATCCCGGCTTACGCATTCTGCCTCTCCGGCAGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:21877830 original size:26 final size:26
Alignment explanation
Indices: 21877794--21877845 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21877784 GCTGAGCGCC
21877794 CATACGGAGTTCATTCC-ATGTCTAAG
1 CATACGGAGTTCATTCCTA-GTCTAAG
*
21877820 CATATGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCTAGTCTAAG
21877846 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCCTAGTCTAAG
Found at i:21878551 original size:26 final size:26
Alignment explanation
Indices: 21878514--21878564 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21878504 GTTGACTTAG
*
21878514 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
21878540 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATCCCCAGTCTA
21878565 GGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21878923 original size:159 final size:155
Alignment explanation
Indices: 21878540--21879033 Score: 476
Period size: 159 Copynumber: 3.1 Consensus size: 155
21878530 CCCAGTCTAA
* * * * *
21878540 GCATACGAAGTTCATTCCCAGTCTAGGATCAGACCGGACCGAGGGTTGCGATAGTAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAG-AGGATCGACA
* ** * *
21878605 GCACGCA-AGATGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTTCGGTCGGCTGAGCGC
65 GCACACAGAGGGGGAC-GGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGC
*
21878669 CCGCACGC-CTGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCT-TTT-GT-GGTTGGCTTAG
* * * * * * * *
21878698 GTATAGGGAGTTCATT-CCATGTCTAAGACCCAG-TCGGACCGAGGGTTGTGCCAGTGAGACCCA
1 GCATACGGAGTTCATTCCCA-GTCTAAGA-TCAGACCGGACCGAGGGTTGTGACAGAG-GATCGA
* ** * * *
21878761 CAGCACACAGAGGGGGATCGGGTTGATCCTTGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGC
63 CAGCACACAGAGGGGGA-CGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGC
* * *
21878826 ACCCGCACACTCATTTTGTAGGTTGACTTAG
127 GCCCGCACGCTC-TTTTGT-GGTTGGCTTAG
*
21878857 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAG-AGGATCGACA
* * * * *
21878922 GCACACAG-GGGGGAACCGGGTCGGTCCCCAGCTTGCGCATTCTGCCTCTCCAATTGGCTGAGCG
65 GCACACAGAGGGGG-A-CGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCG
* * *
21878986 CCTGTACGCTCGTTTCGTGTGTTGGCTTAG
128 CCCGCACGCTC-TTTTGTG-GTTGGCTTAG
21879016 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
21879034 ATGTGTAACC
Statistics
Matches: 268, Mismatches: 56, Indels: 23
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.01
158 58 0.22
159 197 0.74
160 9 0.03
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGAGGATCGACAG
CACACAGAGGGGGACGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCC
GCACGCTCTTTTGTGGTTGGCTTAG
Found at i:21879267 original size:26 final size:26
Alignment explanation
Indices: 21879216--21879268 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21879206 GTTGGCTTAG
* *
21879216 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGACTAA
*
21879242 GCATACAGAGTTTATTCCCA-GACTAA
1 GCATACAGAGTTCATT-CCATGACTAA
21879268 G
1 G
21879269 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGACTAA
Found at i:21879270 original size:200 final size:196
Alignment explanation
Indices: 21878907--21879439 Score: 588
Period size: 200 Copynumber: 2.7 Consensus size: 196
21878897 GAGGGTTGTG
* * * * * *
21878907 GCAGCAGGATCGACAGCACACAGGGGGGAACCGGGTCGGTCCCC-AGCTTGCGCATTCTGCCTCT
1 GCAGCAAGATAGACAGCACACAGGGGGG-ACCAGGCCGATCCCCGA-CTTGCGCATTCTACCTCT
** * * *
21878971 CCAATTGGCTGAGCGCCTGTACGCTCGTTTCGTGTGTTGGCTTAGGCATACGGAGTTCATTCCAT
64 CCAACCGGCTGAACGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
* * * ** * *
21879036 GTGTAACCATACGGAGTTCTTTCCCATTCTAAGATCAAACC-GTACCAAGGCTTGCGATAGTAGG
129 GTCTAAGCATACAGAGTTCTTTCCCAGACTAAGATCAAACCAG-ACCAAGGCTTACGACAGTAGG
21879100 ACCA
193 ACCA
* * * * * *
21879104 GTAGCAGGATCAG-TAGCACATAGGGGGGACCAGGCCGATCCCCGACTTGCGTATTCTACCTCTT
1 GCAGCAAGAT-AGACAGCACACAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTACCTCTC
* * *
21879168 CGACCGGTTGAACGCCTGCACTCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
65 CAACCGGCTGAACGCCTG----CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
* * *
21879233 CATGTCTAAGCATACAGAGTT-TATTCCCAGACTAAGATCGAACCAGACCGAGGGTTACGACAGT
126 CATGTCTAAGCATACAGAGTTCT-TTCCCAGACTAAGATCAAACCAGACCAAGGCTTACGACAGT
21879297 AGGACCA
190 AGGACCA
* * * * * *
21879304 GCAGCAAGATTGACAGCCCACAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCC
1 GCAGCAAGATAGACAGCACACAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCC
* * * * *
21879369 AACCGGCTGAGCGCCTGCACGCTCGTTTCATGGCTTGGCTTCGGCATACGAAGTTCATTCCATGT
66 AACCGGCTGAACGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
21879434 CTAAGC
131 CTAAGC
21879440 CCCTGTCAGA
Statistics
Matches: 279, Mismatches: 48, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
196 90 0.32
197 23 0.08
198 1 0.00
199 2 0.01
200 162 0.58
201 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (196 bp):
GCAGCAAGATAGACAGCACACAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCC
AACCGGCTGAACGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCATACAGAGTTCTTTCCCAGACTAAGATCAAACCAGACCAAGGCTTACGACAGTAGGACC
A
Found at i:21879613 original size:26 final size:26
Alignment explanation
Indices: 21879583--21879635 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21879573 GTTGACTTAG
*
21879583 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21879609 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21879635 G
1 G
21879636 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21879957 original size:25 final size:25
Alignment explanation
Indices: 21879928--21879979 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
21879918 TGACTTAGGC
21879928 ATACAGAGTTCATCCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
*
21879953 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
21879978 AT
1 AT
21879980 CGGACCGGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (25 bp):
ATACAGAGTTCATCCCCAGTCTAAG
Found at i:21880113 original size:342 final size:339
Alignment explanation
Indices: 21879190--21880296 Score: 1002
Period size: 342 Copynumber: 3.2 Consensus size: 339
21879180 CGCCTGCACT
* * * *
21879190 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACAGAGTT
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAG-ATACAGAGTT
* * * * * *
21879254 TATTCCCAGACTAAGATCGAACCAGACCGAGGGTTACGACAGTAGGACCAGCAGCAAGATTGACA
64 CATTCCCAGTCTAAGATCGGACCAGACAGAGGGTTACGACAGCAGGATC-G-A-C---A--G-CA
* * * * * *
21879319 GCCCACAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCAACCGGCTGAGCGCC
120 --TC-TAGGGGGGACCGGGCCGAT--CCAGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCC
* * * * * * * * *
21879384 TGCACGCTCGTTTCATGGCTTGGCTTCGGCATACGAAGTTCATTCCATGTCTAAGCCCCTGTCAG
180 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
** * * *
21879449 ACTGAGGGTTGTGGTAGCAGGACTGACAGTGGGATCGATAAGACGGAGAGGGGGACCGGGCTGAT
245 AC-GAGGGTTGTGGTAGTGGGAC--A-AGT---A--G--CACAC--AGAGGGGGACTGGGCTGAT
* * * * * * * *
21879514 CCTCAGCCTGCGCATTATGCCTTTATGGCCGGCTGAACGTCCG
297 CCCCGGCTTGCGCATTATGCCTCTACGACCGGCTGAGCGCCCG
* * * *
21879557 CATGGTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG-ATACAGAGTTC
* * *
21879622 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGTAGGATTGACAGCATGCT-GGGGG
65 ATTCCCAGTCTAAGATCGGACCAGACAGAGGGTTACGACAGCAGGATCGACAGCAT-CTAGGGGG
* * * * * * * * *
21879686 GACAGGGTCAATCCCCAGCTTACGCATTCTACCTCTCCGACCGGCTGTGTGCCCGGATGCCCATT
129 GACCGGGCCGAT--CCAGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTT
*
21879751 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTAT
192 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA-CGAGGGTTGT
* *
21879816 GGTAGTGGGACAAGTAGCACACAGAGGGGGACTGGACTGATCCCCGGCTTACGCATTATGCCTCT
256 GGTAGTGGGACAAGTAGCACACAGAGGGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCCTCT
* * *
21879881 CCGATCGGTTGAGCGCCCG
321 ACGACCGGCTGAGCGCCCG
*
21879900 CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGATACAGAGTTCA
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATACAGAGTTCA
* * ** *
21879965 TTCCCAGTCTAAGATCGGACCGGATCAG-GGGTTGCGGTAGCAGGATCGCCAGCA-CTTAGGGGG
66 TTCCCAGTCTAAGATCGGACCAGA-CAGAGGGTTACGACAGCAGGATCGACAGCATC-TAGGGGG
*
21880028 GACCGGGCCGATCCATGACTTGCGCATTCTACCTTTCCGACCGGCTGAGCGCCCGCACGCCCGTT
129 GACCGGGCCGATCCA-G-CTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTT
* * * * *
21880093 TCGTGGGTTGGGTTAGGCATAGGGAGTTCATTACATGTCTAAGCCCTAGCCGAACCGAGGGTTGT
192 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA-CGAGGGTTGT
* * ** * * * *
21880158 GGCAGTGGGATC-GGTAGCATGCAGAGGGGGA-TCGGGCCGATCCCTGACTTGCACATTATGCCT
256 GGTAGTGGGA-CAAGTAGCACACAGAGGGGGACT-GGGCTGATCCCCGGCTTGCGCATTATGCCT
* *
21880221 CTTCGACCGGCTCAGCGCCCG
319 CTACGACCGGCTGAGCGCCCG
* * * * * * *
21880242 TACGCTCATTTCATGGGTTGACTTATGCATACGGAGTCCATTCCTAGTCTGAGAT
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGAT
21880297 TAGACAGGAT
Statistics
Matches: 622, Mismatches: 108, Indels: 45
0.80 0.14 0.06
Matches are distributed among these distances:
340 4 0.01
341 3 0.00
342 279 0.45
343 100 0.16
345 3 0.00
347 1 0.00
349 1 0.00
352 3 0.00
353 1 0.00
355 119 0.19
356 1 0.00
357 1 0.00
358 2 0.00
359 1 0.00
361 1 0.00
364 1 0.00
365 1 0.00
366 1 0.00
367 96 0.15
368 3 0.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (339 bp):
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATACAGAGTTCA
TTCCCAGTCTAAGATCGGACCAGACAGAGGGTTACGACAGCAGGATCGACAGCATCTAGGGGGGA
CCGGGCCGATCCAGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCGT
GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACGAGGGTTGTGGTAG
TGGGACAAGTAGCACACAGAGGGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCCTCTACGAC
CGGCTGAGCGCCCG
Found at i:21881169 original size:26 final size:26
Alignment explanation
Indices: 21881133--21881185 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21881123 GTTGACTTAG
*
21881133 GCATATGGAGTTAATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
* * *
21881159 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
21881185 G
1 G
21881186 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:21881663 original size:26 final size:26
Alignment explanation
Indices: 21881634--21881738 Score: 176
Period size: 26 Copynumber: 4.0 Consensus size: 26
21881624 GTTGGCTTAG
21881634 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
21881660 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
21881686 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
21881712 GCATATGGAGTTCATTTCCA-GTCTAA
1 GCATACGGAGTTCA-TTCCATGTCTAA
21881738 G
1 G
21881739 ATCGGACCAG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
26 70 0.93
27 5 0.07
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:21882559 original size:26 final size:26
Alignment explanation
Indices: 21882530--21882582 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21882520 GTTGACTTAG
*
21882530 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
21882556 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
21882582 G
1 G
21882583 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:21883448 original size:26 final size:26
Alignment explanation
Indices: 21883398--21883450 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21883388 GTTGACTTAG
*
21883398 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
*
21883424 GCATATGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
21883450 G
1 G
21883451 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:21883471 original size:367 final size:343
Alignment explanation
Indices: 21883003--21883767 Score: 800
Period size: 354 Copynumber: 2.2 Consensus size: 343
21882993 GCAGAGCATA
* * * * *
21883003 CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGTAGTTTATTCC-ATGTCTAAGCATACGGGG
1 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTA-GTCTAAGCATACGGAG
* * *
21883067 TTCATTACCAGTCTAAGATTAGATCGAATCAAGGGTTACAATAGCAGGACCAGTAGCAGGATCGG
65 TTCATTACCAATCTAAGATTAGATCGAACCAAGGG-T----TA-C-GG--C---AGCAGGATCGA
* * * ** * * ** *
21883132 TAGCACGCATGGGGGGACCGTGCCGATCCCCGACTTGTGCGTTGTACCTCTCCGATCGGTTGAGT
118 CAGCACGCA-GGGGCGACCGGGCCGATCCCCGACTTACGCATTGTACCTCTCCGACCGACTGAGC
*
21883197 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATCTCTAAGCCCCAAC
182 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATCTCTAAGCCCCAAC
* * *
21883262 CGGACTGAGGGTTGTGGCAGTAGGACTGACAGCGAGATCGACAACATGAAGAGGGGGACCGAGCT
247 CGGACCGAGGGTTGTAGCAGTAGGACTG---GC-AG--C-AC-AC----AGAGGAGGACCGAGCT
* *
21883327 GATCC-CGGCTTGCGCATTATGCCTC-TCTGGCCGACTGAGCGCC
300 GATCCTCGGCTTACGCATTATGCCTCTTC-GGCCGACTCAGCGCC
* * * *
21883370 CGTACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATATGGAGT
1 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGT
* * *
21883435 TCATTCCCAATCTAAGATTGGATC-AGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGG
66 TCATTACCAATCTAAGATTAGATCGA-ACCAAGGGTTACGGCAGCAGGATCGACAGCACGCAGGG
* * * * * * *
21883499 TCGATCGGGTCGATCCCTGGCTTACGCATTTTACCTCTCCGACCGACTGAGCGCCCGCATGCCCG
130 GCGACCGGGCCGATCCCCGACTTACGCATTGTACCTCTCCGACCGACTGAGCGCCCGCACGCCCG
** * *
21883564 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTT
195 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATCTCTAAGCCCCAACCGGACCGAGGGTT
*
21883629 GTAGCAGTGGGACTGGCAGCACACAGAGGAGGACCGAGCTGATCCTCGGCTTACGCATTATGCCT
260 GTAGCAGTAGGACTGGCAGCACACAGAGGAGGACCGAGCTGATCCTCGGCTTACGCATTATGCCT
* *
21883694 CTTCGGCTGACTCAGCGTC
325 CTTCGGCCGACTCAGCGCC
* * * * *
21883713 CGCATGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCCTTCCTAGTCTAAG
1 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
21883768 ATCAGACCGA
Statistics
Matches: 341, Mismatches: 53, Indels: 32
0.80 0.12 0.08
Matches are distributed among these distances:
342 20 0.06
343 78 0.23
344 2 0.01
346 2 0.01
347 2 0.01
348 1 0.00
350 2 0.01
351 2 0.01
354 124 0.36
355 18 0.05
358 1 0.00
360 2 0.01
361 1 0.00
362 2 0.01
366 2 0.01
367 81 0.24
368 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (343 bp):
CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGT
TCATTACCAATCTAAGATTAGATCGAACCAAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGG
CGACCGGGCCGATCCCCGACTTACGCATTGTACCTCTCCGACCGACTGAGCGCCCGCACGCCCGT
TTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATCTCTAAGCCCCAACCGGACCGAGGGTTG
TAGCAGTAGGACTGGCAGCACACAGAGGAGGACCGAGCTGATCCTCGGCTTACGCATTATGCCTC
TTCGGCCGACTCAGCGCC
Found at i:21883927 original size:26 final size:26
Alignment explanation
Indices: 21883897--21883949 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21883887 GTTGGCTTAG
*
21883897 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
* *
21883923 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
21883949 G
1 G
21883950 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:21884637 original size:26 final size:26
Alignment explanation
Indices: 21884601--21884653 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21884591 GTTGACTTAG
21884601 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
21884627 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21884653 G
1 G
21884654 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21884991 original size:159 final size:155
Alignment explanation
Indices: 21884627--21885118 Score: 481
Period size: 159 Copynumber: 3.1 Consensus size: 155
21884617 CCCAGTCTAA
*
21884627 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAAGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT-GAGGGTTGCGGCAGCAAGATCGGTA
* * *** * * *
21884692 ACACGCAG-GGGGGATCAGGCCGATCCCCAACTTATGCATTCTGCCTCTCTGGCCGGCTGAGCAC
65 GCACGCAGAGGGGGATCAGG-CGATCCCCGACTTGCACATTCTGCCTCTCCGGTCGGCTAAGC-C
*
21884756 CTGCACGCCCATTTCGTGGGTTGGCTTAG
128 C-GCACGCTCATTTCGTGGGTTGGCTTAG
* ** * * * *
21884785 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGAGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGA-TGAGGGTTGCGGCAGCAAGATCGG
* * * *
21884848 TAGCACGCAGAGGGGGACCAGGTCGATCCCCGGCTTGCACATTATGCCTCTCCAGTCGGCTCAAT
63 TAGCACGCAGAGGGGGATCAGG-CGATCCCCGACTTGCACATTCTGCCTCTCCGGTCGGCT-AA-
* * *
21884913 GCCCGCACACTCGTTTCGTGGGTTGACTTAG
125 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
** * ** * * *
21884944 GCATACGGAGTTCATTCCCAAACTAAGATTAGACCGGAGTGAGGGTTGCGATAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGGGTTGCGGCAGCAAGATCGGTA
* * * * *
21885009 GCACGCAGA--GGGATCAGGCTGATCCTCGACTCGCCCATTCTGCCTCTCCGGTTGGCTGAGCGT
65 GCACGCAGAGGGGGATCAGGC-GATCCCCGACTTGCACATTCTGCCTCTCCGGTCGGCTAAGC--
21885072 CCGCACGCTCATTTCGTGGGTTGGCTTAG
127 CCGCACGCTCATTTCGTGGGTTGGCTTAG
*
21885101 GCATACAGAGTTCATTCC
1 GCATACGGAGTTCATTCC
21885119 ATGTTAAGCA
Statistics
Matches: 269, Mismatches: 54, Indels: 23
0.78 0.16 0.07
Matches are distributed among these distances:
155 2 0.01
156 2 0.01
157 84 0.31
158 57 0.21
159 116 0.43
160 6 0.02
161 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATGAGGGTTGCGGCAGCAAGATCGGTAG
CACGCAGAGGGGGATCAGGCGATCCCCGACTTGCACATTCTGCCTCTCCGGTCGGCTAAGCCCGC
ACGCTCATTTCGTGGGTTGGCTTAG
Found at i:21885498 original size:26 final size:26
Alignment explanation
Indices: 21885467--21885519 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21885457 GTTGACTTAG
*
21885467 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
21885493 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21885519 G
1 G
21885520 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21885983 original size:26 final size:26
Alignment explanation
Indices: 21885954--21886006 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21885944 GTTAGCTTAG
*
21885954 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
21885980 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
21886006 G
1 G
21886007 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:21886194 original size:26 final size:26
Alignment explanation
Indices: 21886164--21886216 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21886154 GTTAACTTAG
**
21886164 GCATACGGTGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
**
21886190 GCATACGAAGTTCATTTCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
21886216 G
1 G
21886217 ATCGAATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:21886536 original size:26 final size:26
Alignment explanation
Indices: 21886505--21886557 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21886495 GTTAGCTTAG
*
21886505 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
21886531 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21886557 G
1 G
21886558 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21887689 original size:157 final size:157
Alignment explanation
Indices: 21887165--21887910 Score: 504
Period size: 158 Copynumber: 4.6 Consensus size: 157
21887155 TACCACCCGT
* * * * * * * *
21887165 TCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCTGCTGAGCGTCCGCGCGCTCGTTTCGTGGG
1 TCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* * ** * * * *
21887230 TTGACTTAGGCATACGGAGTTCA-TCCGTAGTCTAAGATTGGACCGGACTGAAGGTTACAGCAGT
66 TTGACTTAGGCATACAGAGTTCATTCC-AAGTCTAAGATCAGACCGGAC-GAGGGTTGCGGCAGC
**
21887294 AGGATCGGTAGCACGTAGGGGGGACCAGG
129 AGGATCGACAGCACGTAGGGGGGACCAGG
* * * * * * * *
21887323 TCGATCCCCGGTTTGCGCATGCTACCTCCCCGATCGGTTGAGCGCCCGCACGCCCGTTTCGTGGG
1 TCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* * ** * *
21887388 TTGGCTTAGGCATA-GGAAGTTCATT-CAATGTCTAAGCCCCA-ATCGGACCGAGGGTTGTGGCA
66 TTGACTTAGGCATACAG-AGTTCATTCCAA-GTCTAAG-ATCAGACCGGA-CGAGGGTTGCGGCA
* * * * *
21887450 ACGGGACCGACAGCACATAGAGGGGGATCAGG
127 GCAGGATCGACAGCACGTAG-GGGGGACCAGG
* * * * * *
21887482 -CTGAT-CCTCGGCTTGCGCATTATGCCTCTCCG-GCAGGCTCAGCTCTCGCACGCTCATTTCAT
1 TC-GATCCCT-GGCTTGCGCATTCTGCCTCTCCGATC-GGCTGAGCGCCCGCACGCTCGTTTCAT
* * * * *
21887544 GGGTTTACTTAGGCATACAGTGTTCATTCCCAGT-TAAGATCAGACCAGATCGAGGGTTGCGGTA
63 GGGTTGACTTAGGCATACAGAGTTCATTCCAAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGCA
21887608 GCAGGATCGACAGCACGTAGGGGGGACCAGG
127 GCAGGATCGACAGCACGTAGGGGGGACCAGG
* **
21887639 TCGATCCCTGACTTATGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
1 TCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
** * * ** *
21887704 TTGGTTTAGGCATATAGAGTTCATTCCATGTCTAAGCCCTAG-TCGGACTGAAGGTTGTGGTAGC
66 TTGACTTAGGCATACAGAGTTCATTCCAAGTCTAAGATC-AGACCGGAC-G-AGG--GT--T-GC
** * *
21887768 AAGACCGACAGTGGGATCGACAGCACGCAGAGGGGGACAAGG
123 --G---G-CAGCAGGATCGACAGCACGTAG-GGGGGACCAGG
* * ** * * * * * *
21887810 TTGATCCCTGACTTTTGCATTATGCCTCTCCG-GCTAGTTGAGAGCCCACACGCTCGTTTCATGG
1 TCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATC-GGCTGAGCGCCCGCACGCTCGTTTCATGG
* * *
21887874 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
65 GTTGACTTAGGCATACAGAGTTCATTCCAAGTCTAAG
21887911 CATATGGAGT
Statistics
Matches: 455, Mismatches: 101, Indels: 51
0.75 0.17 0.08
Matches are distributed among these distances:
157 88 0.19
158 162 0.36
159 82 0.18
160 3 0.01
161 2 0.00
163 1 0.00
164 2 0.00
166 1 0.00
169 1 0.00
170 19 0.04
171 94 0.21
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
TCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
TTGACTTAGGCATACAGAGTTCATTCCAAGTCTAAGATCAGACCGGACGAGGGTTGCGGCAGCAG
GATCGACAGCACGTAGGGGGGACCAGG
Found at i:21887914 original size:26 final size:26
Alignment explanation
Indices: 21887884--21887936 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21887874 GTTGACTTAG
21887884 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21887910 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21887936 G
1 G
21887937 ATCAAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21888418 original size:26 final size:26
Alignment explanation
Indices: 21888382--21888433 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21888372 GGTTGGCTAG
21888382 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
21888408 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21888434 TATCATATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21888766 original size:26 final size:26
Alignment explanation
Indices: 21888737--21888789 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21888727 GTTAGCTTAG
*
21888737 GCATACGAAGTTTATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
21888763 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21888789 G
1 G
21888790 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21888802 original size:355 final size:355
Alignment explanation
Indices: 21888151--21888811 Score: 894
Period size: 355 Copynumber: 1.9 Consensus size: 355
21888141 GGGACCGGAC
* * * * *
21888151 CGATCCCCGGCTTGCGCATTATACCTTTCTGACTGGCTCAGCGCCTGAACGCTCATTTTGTGGGT
1 CGATCCCCGGCTTGCGCATTATACCTCTCCGACCGGCTCAGCGCCCGAACGCTCATTTCGTGGGT
* *
21888216 TGACTGAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTACGACAGCAG
66 TGACTGAGGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCAGACTAAGGGTTACGACAGCAA
* * * * *
21888281 GATCGACAGCACGCAGGGGGGGATCAAGTCGGTCCCCAGCTTACGCATTCTGCCTCTCCGACCGG
131 GATCGACAGCACGCAGGGAGGGACCAAGTCGATCCCCAGCTTACGCATTCTGCCACTCCGACCGA
* * *
21888346 CTGAGCACCCGTACACTCATTTCGTGGGTTGGCTAGGCATACGGAGTTCATTCCATGTCTAAGCA
196 CTGAGCACCCGTACACTCATTTCATGGGTTAGCTAGGCATACGAAGTTCATTCCATGTCTAAGCA
* * *
21888411 TATGGAGTTCATTCCCAGTCTAATATCATATCGGACCGAGGCTTGCAATAGCAGGACCAGCAGTA
261 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGCTTGCAATAGCAGGACCAGCAGTA
21888476 GGATCGATAGCACGCAGGTGGGGATCAGGT
326 GGATCGATAGCACGCAGGTGGGGATCAGGT
* * * * *
21888506 CGATCCCCGGCTTGCGCGTTCTACCTCTCCGACCGGCTGAGTGCCCGTACGCTCATTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTATACCTCTCCGACCGGCTCAGCGCCCGAACGCTCATTTCGTGGGT
* * * ** * * *
21888571 TGACTTAGGCATATGGAGTTCACTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGACAGGAA
66 TGACTGAGGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCAGACTAAGGGTTACGACAGCAA
** ** * **
21888636 GATCGACAGCACGC-GGGAGGGACCGGGTCGATCCCC-GACTTGTGCATTCTGCCACTCTGGTCG
131 GATCGACAGCACGCAGGGAGGGACCAAGTCGATCCCCAG-CTTACGCATTCTGCCACTCCGACCG
* * * * *
21888699 ACTGTGCGCCCGTACGCTCGTTTCATGGGTTAGCTTAGGCATACGAAGTTTATTCCATGTCTAAG
195 ACTGAGCACCCGTACACTCATTTCATGGGTTAGC-TAGGCATACGAAGTTCATTCCATGTCTAAG
*
21888764 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGC
259 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGCTTGC
21888812 GGCAGCAGGA
Statistics
Matches: 260, Mismatches: 44, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
353 1 0.00
354 63 0.24
355 196 0.75
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (355 bp):
CGATCCCCGGCTTGCGCATTATACCTCTCCGACCGGCTCAGCGCCCGAACGCTCATTTCGTGGGT
TGACTGAGGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCAGACTAAGGGTTACGACAGCAA
GATCGACAGCACGCAGGGAGGGACCAAGTCGATCCCCAGCTTACGCATTCTGCCACTCCGACCGA
CTGAGCACCCGTACACTCATTTCATGGGTTAGCTAGGCATACGAAGTTCATTCCATGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGCTTGCAATAGCAGGACCAGCAGTA
GGATCGATAGCACGCAGGTGGGGATCAGGT
Found at i:21889129 original size:354 final size:340
Alignment explanation
Indices: 21888132--21889300 Score: 1015
Period size: 354 Copynumber: 3.3 Consensus size: 340
21888122 GACAGGCAGT
* * * * * * * * *
21888132 ACGTAGAGGGGGACCGGACCGATCCCCGGCTTGCGCATTATACCTTTCTGACTGGCTCAGCGCCT
1 ACGTAGA-GGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC-CCC
* * * * * * * **
21888197 GAACGCTCATTTTGTGGGTTGACTGAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
64 GCACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCA-TCCCAGTCTAAGACCCGACTGGA
* * * * * * * ** * *
21888262 CTAAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGGGATCAAGTCGGTCCCC-AGCTTACG
128 CTGAGGGTTGCGAAAGGAAGATCGACAGCACG-AGGGAGGGACCGGGTCGATCCCCGA-CTTATG
* * * * *
21888326 CATTCTGCCTCTCCGACCGGCTGAGCACCCGTACACTCATTTCGTGGGTTGGC-TAGGCATACGG
191 CATTCTGCCTCTCCGGCTGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* *
21888390 AGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAATATCATATCGGACCGAGGCTT
256 AGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGG---
*
21888455 GCAATAGCAGGACCAGCAGTAGGATCGATAGC
318 G---TTGC-GG--CAGC---AGGATCGATAGC
* * * * * * *
21888487 ACGCAGGTGGGGATCAGGTCGATCCCCGGCTTGCGCGTTCTACCTCTCCGACCGGCTGAGTGCCC
1 ACGTA-GAGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAG-CCCC
* * * *
21888552 GTACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCACTCCCAGTCTAAGATCGGACTGGA
64 GCACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCA-TCCCAGTCTAAGACCCGACTGGA
* * *
21888617 CTGAGGGTTGCGACAGGAAGATCGACAGCACGCGGGAGGGACCGGGTCGATCCCCGACTTGTGCA
128 CTGAGGGTTGCGAAAGGAAGATCGACAGCACGAGGGAGGGACCGGGTCGATCCCCGACTTATGCA
* * * * * * *
21888682 TTCTGCCACTCTGG-TCGACTGTGCGCCCGTACGCTCGTTTCATGGGTT-AGCTTAGGCATACGA
193 TTCTGCCTCTCCGGCT-GGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGG
* *
21888745 AGTTTATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTT
256 AGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTT
*
21888810 GCGGCAGCAGGATCGATAGT
321 GCGGCAGCAGGATCGATAGC
* * * *
21888830 ACGTAGAAGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCTATCGGCTGAGCCCCGC
1 ACGTAGAGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCCCCGC
* ** * * *
21888895 AAGCTTGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA-ACCCTAGCTGGAC
66 ACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATCCCA-GTCTAAGACCCGA-CTGGAC
*
21888959 TGAGGGTTGTGGCAGCAAGAATGGCAACGGGATCGACAGCACGTAGAGG-GGGATCGGG-CTGAT
129 TGAGGG-T-T-GC-G--A-AA-GG-AA---GATCGACAGCACG-AG-GGAGGGACCGGGTC-GAT
* * * * **
21889022 CCCTGCCTTATGCATTATGCCTCTCCGGCTGGCTGAACACCCACACGCTCGTTTCGTGGGTTGAC
179 CCCCGACTTATGCATTCTGCCTCTCCGGCTGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGAC
* ** *
21889087 TTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATTCTTAGTCTAAGATCGGAT
244 TTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGAT
* * * * * **
21889151 CAGATCGAGGGTTGCGGTAGTAGGATTGGCAGC
308 CGGACCGAGGGTTGCGGCAGCAGGATCGATAGC
* * * * * *
21889184 ACGTAGGGGGGATCGGGCTGATCCCC-ACTTACGTATTCTGCCTCTCCGGCCGGCTGAGCACCCG
1 ACGTAGAGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC-CCCG
* * *
21889248 CACGCCCATTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATCCCTAGTCTAAG
65 CACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATCCC-AGTCTAAG
21889301 CATATGGAGT
Statistics
Matches: 663, Mismatches: 122, Indels: 58
0.79 0.14 0.07
Matches are distributed among these distances:
340 7 0.01
341 56 0.08
342 46 0.07
343 16 0.02
344 2 0.00
345 1 0.00
346 4 0.01
347 1 0.00
348 3 0.00
349 5 0.01
350 2 0.00
352 1 0.00
353 40 0.06
354 268 0.40
355 210 0.32
356 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (340 bp):
ACGTAGAGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCCCCGC
ACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATCCCAGTCTAAGACCCGACTGGACTG
AGGGTTGCGAAAGGAAGATCGACAGCACGAGGGAGGGACCGGGTCGATCCCCGACTTATGCATTC
TGCCTCTCCGGCTGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGC
AGCAGGATCGATAGC
Found at i:21889310 original size:26 final size:26
Alignment explanation
Indices: 21889274--21889326 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21889264 GTTAGCTTAG
21889274 GCATAGGGAGTTCATCCCTAGTCTAA
1 GCATAGGGAGTTCATCCCTAGTCTAA
* *
21889300 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATAGGGAGTTCATCCCTAGTCTAA
21889326 G
1 G
21889327 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATAGGGAGTTCATCCCTAGTCTAA
Found at i:21889315 original size:183 final size:181
Alignment explanation
Indices: 21888988--21889485 Score: 629
Period size: 183 Copynumber: 2.7 Consensus size: 181
21888978 AATGGCAACG
* *
21888988 GGATCGACAGCACGTAGAGGGGGATCGGGCTGATCCCTGC-CTTATGCATTATGCCTCTCCGGCT
1 GGATCGACAGCACGTAG-GGGGGATCGGGCTGATCCC--CACTTACGCATTATGCCTCTCCGGCC
* * * *
21889052 GGCTGAACACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
63 GGCTGAGCACCCGCACGCCCGTTTCGTGGGTTG-CTTAGGCATAGGGAGTTCAT-CCCAGTCTAA
* * *
21889117 GCATATGGAGTTCATTCTTAGTCTAAGATCGGATCAGATCGAGGGTTGCGGTAGTA
126 GCATATGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCA
* * * *
21889173 GGATTGGCAGCACGTAGGGGGGATCGGGCTGATCCCCACTTACGTATTCTGCCTCTCCGGCCGGC
1 GGATCGACAGCACGTAGGGGGGATCGGGCTGATCCCCACTTACGCATTATGCCTCTCCGGCCGGC
*
21889238 TGAGCACCCGCACGCCCATTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATCCCTAGTCTAAGCA
66 TGAGCACCCGCACGCCCGTTTCGTGGGTT-GCTTAGGCATAGGGAGTTCATCCC-AGTCTAAGCA
* *
21889303 TATGGAGTTCATTCCTAGTCTAAGATTGGATCGGACCGAGGGTTGCGGTAGCA
129 TATGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCA
* * ** * * * * *
21889356 GGATCGATAGCACGCAGGGTCGATCGGGCCGATCCCTAGCTTACGCATTTTACCTCTCCGACCGG
1 GGATCGACAGCACGTAGGGGGGATCGGGCTGATCCCCA-CTTACGCATTATGCCTCTCCGGCCGG
* ** * *
21889421 TTGAGTGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
65 CTGAGCACCCGCACGCCCGTTTCGTGGGTT-GCTTAGGCATAGGGAGTTCATCCCA-GTCTAAGC
21889486 CCCAGTCGGA
Statistics
Matches: 273, Mismatches: 35, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
182 4 0.01
183 156 0.57
184 98 0.36
185 15 0.05
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.26
Consensus pattern (181 bp):
GGATCGACAGCACGTAGGGGGGATCGGGCTGATCCCCACTTACGCATTATGCCTCTCCGGCCGGC
TGAGCACCCGCACGCCCGTTTCGTGGGTTGCTTAGGCATAGGGAGTTCATCCCAGTCTAAGCATA
TGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCA
Found at i:21889633 original size:159 final size:159
Alignment explanation
Indices: 21889431--21889960 Score: 484
Period size: 159 Copynumber: 3.3 Consensus size: 159
21889421 TTGAGTGCCC
* * * * *
21889431 GCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCGG
1 GCATGCTCATTTCGTGGGTTGACTTAGGCATAGAGAGTTCATTCCCA-GTCTAAGCCCCAGCCGG
* * * * *
21889495 ACCGAGGGTTGTAGCAGTGGGACTGGCAGCACACAGAGGAGGACCGAGCTGATCCTTGGCTTGCG
65 ACCGAGGGTTGTAGCAGTGGGACTGACAGCACGCAGAGGGGGATCGAGCTGATCCTCGGCTTGCG
* * *
21889560 CATTATGCCTCTTCGGTTGACTCAGCATCT
130 CATTATGCCTCTTCGGTCGGCTCAGCACCT
* * **
21889590 GCAAGCTCATTTCGTGGGTTGACTTATGCAT-GCAGAGTTCATTCCCAGTCTAAG-ATCAGACCG
1 GCATGCTCATTTCGTGGGTTGACTTAGGCATAG-AGAGTTCATTCCCAGTCTAAGCCCCAG-CCG
* * * * * *
21889653 GACCGAGGGTTG-CGACAGTAGGA-TCGATAGCACGTAG-GGGGGATC-AGGTCGATACC-CGAC
64 GACCGAGGGTTGTAG-CAGTGGGACT-GACAGCACGCAGAGGGGGATCGAGCT-GAT-CCTCGGC
* * * * *
21889713 TTGTGCATTCTGCCTCTCCGGTCGGTTGAGCACCT
125 TTGCGCATTATGCCTCTTCGGTCGGCTCAGCACCT
* * * * * * *
21889748 GCATGCTCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCAGT-CCATGTCTAAGCCCCAGCCAG
1 GCATGCTCATTTCGTGGGTTGACTTAGGCATAGAGAGTTCATTCCCA-GTCTAAGCCCCAGCCGG
* * * * * *
21889812 ACTGAGGGTTGTGGCAGTGAGACCGACAGCACGCAGAGGGGGATCGGGTTGATCCTCGGCTTGCG
65 ACCGAGGGTTGTAGCAGTGGGACTGACAGCACGCAGAGGGGGATCGAGCTGATCCTCGGCTTGCG
* * *
21889877 TATTATGCCTCTTCGATCGGCTCAGCGCCT
130 CATTATGCCTCTTCGGTCGGCTCAGCACCT
* * * * *
21889907 ACATGCTCATTTCGTGGGTTAACTTATGCATACAGAATTCATTCCCAGTCTAAG
1 GCATGCTCATTTCGTGGGTTGACTTAGGCATAGAGAGTTCATTCCCAGTCTAAG
21889961 ATTGGGACCA
Statistics
Matches: 287, Mismatches: 68, Indels: 32
0.74 0.18 0.08
Matches are distributed among these distances:
157 6 0.02
158 115 0.40
159 158 0.55
160 8 0.03
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (159 bp):
GCATGCTCATTTCGTGGGTTGACTTAGGCATAGAGAGTTCATTCCCAGTCTAAGCCCCAGCCGGA
CCGAGGGTTGTAGCAGTGGGACTGACAGCACGCAGAGGGGGATCGAGCTGATCCTCGGCTTGCGC
ATTATGCCTCTTCGGTCGGCTCAGCACCT
Found at i:21889799 original size:158 final size:157
Alignment explanation
Indices: 21889300--21889962 Score: 419
Period size: 159 Copynumber: 4.2 Consensus size: 157
21889290 CCTAGTCTAA
* ** ** *
21889300 GCATATGGAGTTCATTCC-TAGTCTAAGATTGGATCGGACCGAGGGTTGCGGTAGCAGGATCGAT
1 GCATAGGGAGTTCATTCCAT-GTCTAAGATCAGATCGGACCGAGGGTTGCGACAGTAGGATCGAT
** * * * * * * ** **
21889364 AGCACGCAGGGTCGATCGGGCCGATCCCTAGCTTACGCATTTTACCTCTCCGACCGGTTGAGTGC
65 AGCACGCAGGGAGGATCAGGTCGATCCCGA-CTTGCGCATTATGCCTCTCCGGTCGGTTGAGCAC
* *
21889429 CCGCATGCCCGTTTCGTGGGTTGGCTTAG
129 CTGCATGCTCGTTTCGTGGGTTGGCTTAG
** * *
21889458 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTG-TAGCAGTGGGA-CTG
1 GCATAGGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTGCGA-CAGTAGGATC-G
** * * * * * * * ** *
21889520 GCAGCACACAGAGGAGGACCGAGCT-GATCCTTGGCTTGCGCATTATGCCTCTTCGGTTGACTCA
63 ATAGCACGCAG-GGAGGATC-AGGTCGATCC-CGACTTGCGCATTATGCCTCTCCGGTCGGTTGA
* * * * *
21889584 GCATCTGCAAGCTCATTTCGTGGGTTGACTTAT
125 GCACCTGCATGCTCGTTTCGTGGGTTGGCTTAG
* *
21889617 GCAT-GCAGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGA
1 GCATAG-GGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGTAGGATCGA
* * * *
21889680 TAGCACGTAGGGGGGATCAGGTCGATACCCGACTTGTGCATTCTGCCTCTCCGGTCGGTTGAGCA
64 TAGCACGCAGGGAGGATCAGGTCGAT-CCCGACTTGCGCATTATGCCTCTCCGGTCGGTTGAGCA
* *
21889745 CCTGCATGCTCGTTCCATGGGTTGGCTTAG
128 CCTGCATGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * * *
21889775 GCATAGGGAGTTCAGTCCATGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGCAGT-GAGACCGA
1 GCATAGGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTGCGACAGTAG-GATCGA
* * * * * * * * * *
21889838 CAGCACGCAGAGGGGGATCGGGTTGATCCTCGGCTTGCGTATTATGCCTCTTCGATCGGCTCAGC
64 TAGCACGCAG-GGAGGATCAGGTCGATCC-CGACTTGCGCATTATGCCTCTCCGGTCGGTTGAGC
* * * ** *
21889903 GCCTACATGCTCATTTCGTGGGTTAACTTAT
127 ACCTGCATGCTCGTTTCGTGGGTTGGCTTAG
** *
21889934 GCATACAGAATTCATTCCCA-GTCTAAGAT
1 GCATAGGGAGTTCATT-CCATGTCTAAGAT
21889963 TGGGACCAGA
Statistics
Matches: 379, Mismatches: 105, Indels: 42
0.72 0.20 0.08
Matches are distributed among these distances:
157 8 0.02
158 168 0.44
159 194 0.51
160 9 0.02
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATAGGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGTAGGATCGATA
GCACGCAGGGAGGATCAGGTCGATCCCGACTTGCGCATTATGCCTCTCCGGTCGGTTGAGCACCT
GCATGCTCGTTTCGTGGGTTGGCTTAG
Found at i:21889884 original size:317 final size:317
Alignment explanation
Indices: 21889307--21889962 Score: 846
Period size: 317 Copynumber: 2.1 Consensus size: 317
21889297 TAAGCATATG
* ** * **
21889307 GAGTTCATTCCTAGTCTAAGATTGGATCGGACCGAGGGTTGCGGTAGCAGGATCGATAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGATAGCACGCA
* * * * **
21889372 GGGTCGATCGGGCCGATCCCTAGCTTACGCATTTTACCTCTCCGACCGGTTGAGTGCCCGCATGC
66 GGGGCGATCAGGCCGATCCCGAGCTTACGCATTCTACCTCTCCGACCGGTTGAGCACCCGCATGC
* * * * *
21889437 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGG
131 CCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAGCCAGACCGAGG
* * * *
21889502 GTTGTAGCAGTGGGACTGGCAGCACACAGAGGAGGACCGAGCTGATCCTTGGCTTGCGCATTATG
196 GTTGTAGCAGTGAGACCGACAGCACACAGAGGAGGACCGAGCTGATCCTCGGCTTGCGCATTATG
* * * * * *
21889567 CCTCTTCGGTTGACTCAGCATCTGCAAGCTCATTTCGTGGGTTGACTTATGCATGCA
261 CCTCTTCGATCGACTCAGCACCTACAAGCTCATTTCGTGGGTTAACTTATGCATACA
* *
21889624 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGATAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGATAGCACGCA
* * ** * ** *
21889689 GGGGGGATCAGGTCGATACCCGA-CTTGTGCATTCTGCCTCTCCGGTCGGTTGAGCACCTGCATG
66 GGGGCGATCAGGCCGAT-CCCGAGCTTACGCATTCTACCTCTCCGACCGGTTGAGCACCCGCATG
* *
21889753 CTCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAGCCAGACTGAG
130 CCCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAGCCAGACCGAG
* * * * * * *
21889818 GGTTGTGGCAGTGAGACCGACAGCACGCAGAGGGGGATCGGGTTGATCCTCGGCTTGCGTATTAT
195 GGTTGTAGCAGTGAGACCGACAGCACACAGAGGAGGACCGAGCTGATCCTCGGCTTGCGCATTAT
* * *
21889883 GCCTCTTCGATCGGCTCAGCGCCTACATGCTCATTTCGTGGGTTAACTTATGCATACA
260 GCCTCTTCGATCGACTCAGCACCTACAAGCTCATTTCGTGGGTTAACTTATGCATACA
*
21889941 GAATTCATTCCCAGTCTAAGAT
1 GAGTTCATTCCCAGTCTAAGAT
21889963 TGGGACCAGA
Statistics
Matches: 288, Mismatches: 50, Indels: 2
0.85 0.15 0.01
Matches are distributed among these distances:
317 284 0.99
318 4 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (317 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGATAGCACGCA
GGGGCGATCAGGCCGATCCCGAGCTTACGCATTCTACCTCTCCGACCGGTTGAGCACCCGCATGC
CCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAGCCAGACCGAGG
GTTGTAGCAGTGAGACCGACAGCACACAGAGGAGGACCGAGCTGATCCTCGGCTTGCGCATTATG
CCTCTTCGATCGACTCAGCACCTACAAGCTCATTTCGTGGGTTAACTTATGCATACA
Found at i:21890091 original size:317 final size:317
Alignment explanation
Indices: 21889438--21890095 Score: 720
Period size: 317 Copynumber: 2.1 Consensus size: 317
21889428 CCCGCATGCC
* * *
21889438 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAGCCAGACCGAGGG
* * * *
21889503 TTGTAGCAGTGGGACTGGCAGCACACAGAGGAGGACCGAGCTGATCCTTGGCTTGCGCATTATGC
66 TTGTAGCAGTGAGACCGACAGCACACAGAGGAGGACCGAGCTGATCCTCGGCTTGCGCATTATGC
* * * * * * *
21889568 CTCTTCGGTTGACTCAGCATCTGCAAGCTCATTTCGTGGGTTGACTTATGCATGCAGAGTTCATT
131 CTCTTCGATCGACTCAGCACCTACAAGCTCATTTCGTGGGTTAACTTATGCATACAGAATTCATT
* * * * * ** *
21889633 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGATAGCACGTAGGGGGGATC
196 CCCAGTCTAAGATCAGACCAGACCGAGGATTGCGACAGAAGAATCGACAGCACCCAGGGGGGACC
* * * *** * **
21889698 AGGTCGATACCCGACTTGTGCATTCTGCCTCTCCGGTCGGTTGAGCACCTGCATGCT
261 AGGTCGATACCAGACTTGTCCATTCTGCCTCTCCGGCCCACTAAGCACCTGCACACT
* * *
21889755 CGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAGCCAGACTGAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAGCCAGACCGAGGG
* * * * * * *
21889820 TTGTGGCAGTGAGACCGACAGCACGCAGAGGGGGATCGGGTTGATCCTCGGCTTGCGTATTATGC
66 TTGTAGCAGTGAGACCGACAGCACACAGAGGAGGACCGAGCTGATCCTCGGCTTGCGCATTATGC
* * *
21889885 CTCTTCGATCGGCTCAGCGCCTACATGCTCATTTCGTGGGTTAACTTATGCATACAGAATTCATT
131 CTCTTCGATCGACTCAGCACCTACAAGCTCATTTCGTGGGTTAACTTATGCATACAGAATTCATT
** * * *
21889950 CCCAGTCTAAGATTGGGACCAGACCGAGGATTGTGGCAGCAAGAAGTC-ACAGTACCCA-GGGGG
196 CCCAGTCTAAGA-TCAGACCAGACCGAGGATTGCGACAG-AAGAA-TCGACAGCACCCAGGGGGG
*
21890013 ACC-GAGTCGAT-CCA-AGCTTGTCCATTGGTG-CTC-CCGGCCCACTAAGCAGACC-GCACACT
258 ACCAG-GTCGATACCAGA-CTTGTCCATT-CTGCCTCTCCGGCCCACTAAGC--ACCTGCACACT
* *
21890072 CGTTTCGTTGGTGGGCTTAGGCAT
1 CGTTTCGTGGGTTGGCTTAGGCAT
21890096 CGGAGCATTC
Statistics
Matches: 279, Mismatches: 54, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
316 10 0.04
317 220 0.79
318 38 0.14
319 9 0.03
320 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.24
Consensus pattern (317 bp):
CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAGCCAGACCGAGGG
TTGTAGCAGTGAGACCGACAGCACACAGAGGAGGACCGAGCTGATCCTCGGCTTGCGCATTATGC
CTCTTCGATCGACTCAGCACCTACAAGCTCATTTCGTGGGTTAACTTATGCATACAGAATTCATT
CCCAGTCTAAGATCAGACCAGACCGAGGATTGCGACAGAAGAATCGACAGCACCCAGGGGGGACC
AGGTCGATACCAGACTTGTCCATTCTGCCTCTCCGGCCCACTAAGCACCTGCACACT
Found at i:21892235 original size:26 final size:25
Alignment explanation
Indices: 21892202--21892252 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
21892192 TGGCTTAGGC
21892202 ATACGAGTTCATT-CCATGTCTAAGA
1 ATACGAGTTCATTCCCA-GTCTAAGA
21892227 ATACAGAGTTCATTCCCAGTCTAAGA
1 ATAC-GAGTTCATTCCCAGTCTAAGA
21892253 TTAGACCGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 4 0.17
26 17 0.71
27 3 0.12
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (25 bp):
ATACGAGTTCATTCCCAGTCTAAGA
Found at i:21892413 original size:26 final size:26
Alignment explanation
Indices: 21892383--21892435 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21892373 GTTGACTTAG
21892383 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21892409 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21892435 G
1 G
21892436 ATCGAATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21892593 original size:183 final size:182
Alignment explanation
Indices: 21892131--21892593 Score: 459
Period size: 183 Copynumber: 2.5 Consensus size: 182
21892121 TCGGGCTAGG
* * * *
21892131 CCCCGGCTTGCGCATTCTGTCTCTCCGGTCAGCTGAGCGCCTACACACTCGTTTCATGGGCTGGC
1 CCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCTGCACACTCGTTTCATGGG-TTGC
* * *
21892196 TTAGGCATACGAGTTCATTCCATGTCTAAGAATACAGAGTTCATTCCCAGTCTAAGATTAGACCG
65 TTAGGCATAGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATGAGACCG
* * ** * * *
21892261 GATCGATGGTTGCGGTAGCAGGATCTGCAGCATGCAGGGGGGACCGAACCGAT
130 AATCGAAGGTTGCGACAGCAGGATCTGAAGCACGCAGGAGGGACCGAACCGAT
** ** * * *** *
21892314 CCCTAGCTTATGCATTCTGCCTCTCGGGCCAGCTGAACGCCTGCATTTTCATTTCATGGGTTGAC
1 CCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCTGCACACTCGTTTCATGGGTTG-C
* *
21892379 TTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-A
65 TTAGGCATA-GGAGTTCAT-TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT-GAGA
* * ** * ***
21892442 TCGAATC-AAGGTTGTGACAGCAGGAT-TGGAAGCACGTTGGAGGGATCGGGTCGAT
127 CCGAATCGAAGGTTGCGACAGCAGGATCT-GAAGCACGCAGGAGGGACCGAACCGAT
* * * *
21892497 CCCCGGCTTGCGCATTC-GACCTCTCTGGCCGGCTGAGCGCCCGCACACCCGTTTCATGGGTTCG
1 CCCCGGCTTGCGCATTCTG-CCTCTCCGGCCAGCTGAGCGCCTGCACACTCGTTTCATGGGTT-G
*
21892561 CTTAGGCATAGGGAGTTCATTCCATATCTAAGC
64 CTTAGGCATA-GGAGTTCATTCCATGTCTAAGC
21892594 CCCAGCCGGA
Statistics
Matches: 222, Mismatches: 50, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
182 7 0.03
183 163 0.73
184 48 0.22
185 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (182 bp):
CCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCTGCACACTCGTTTCATGGGTTGCT
TAGGCATAGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATGAGACCGA
ATCGAAGGTTGCGACAGCAGGATCTGAAGCACGCAGGAGGGACCGAACCGAT
Found at i:21892762 original size:26 final size:26
Alignment explanation
Indices: 21892725--21892777 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21892715 GTTGGCTTAG
*
21892725 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
21892751 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
21892777 G
1 G
21892778 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:21893127 original size:26 final size:26
Alignment explanation
Indices: 21893091--21893143 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21893081 GTTGACTTAG
21893091 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
21893117 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
21893143 G
1 G
21893144 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:21893754 original size:26 final size:26
Alignment explanation
Indices: 21893705--21893757 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21893695 CCTGTCTTAG
*
21893705 GCATACAGAGTTCATTGCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
21893731 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
21893757 G
1 G
21893758 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:21894465 original size:158 final size:157
Alignment explanation
Indices: 21894111--21894487 Score: 366
Period size: 158 Copynumber: 2.4 Consensus size: 157
21894101 CCCAGTCTAA
* * * *
21894111 GCATATGGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGCGGTAGCAAGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACCGAGGGTTGTGGCAGCAAGACCGACA
* * * * *
21894176 GCACGCAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTACCTTTTCGGCCGGCTGAGCGCC
65 GCACGCAGAGGGGACCGGGTCGATCCTCGACTTGCGCATTATACCTTTCCGACCGGCTCAGCGCC
* * * *
21894241 CGCATGCACGTTTCGTTGGTTGGCTTAG
130 CGCACGCACATTTCGTGGGTTGACTTAG
* * ** *
21894269 GCATAGGGAGTTCATT-GCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGCAGCGAGACCGA
1 GCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGA-CGGACCGAGGGTTGTGGCAGCAAGACCGA
* ** * *
21894332 CAGCATGCAGAGGGGATTGGGTCGATTCC-CGGCTTGCGCATTATGA-CTTTCCGACCTGCTCAG
63 CAGCACGCAGAGGGGACCGGGTCGA-TCCTCGACTTGCGCATTAT-ACCTTTCCGACCGGCTCAG
* * * * *
21894395 CGTCTGGACGCTCATTTTGTGGGTTGACTTAG
126 CGCCCGCACGCACATTTCGTGGGTTGACTTAG
* * * * *
21894427 GCATATGGAGTTCATTCCCAGTCAAAGATCAGATCGGACCAATGGTTGTGGTAGCAGGACC
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTGTGGCAGCAAGACC
21894488 AGCAGTAGGA
Statistics
Matches: 173, Mismatches: 39, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.02
158 161 0.93
159 8 0.05
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGACGGACCGAGGGTTGTGGCAGCAAGACCGACAG
CACGCAGAGGGGACCGGGTCGATCCTCGACTTGCGCATTATACCTTTCCGACCGGCTCAGCGCCC
GCACGCACATTTCGTGGGTTGACTTAG
Found at i:21894661 original size:26 final size:25
Alignment explanation
Indices: 21894610--21894661 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
21894600 GTTGACTTAG
* *
21894610 GCATACGGAGTTCATCCCCAGTTAA
1 GCATACGGAGCTCATCCCCAGGTAA
* *
21894635 GCATTCGGAGCTCATTCCCAGAGTAA
1 GCATACGGAGCTCATCCCCAG-GTAA
21894661 G
1 G
21894662 ATCAGATCGA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (25 bp):
GCATACGGAGCTCATCCCCAGGTAA
Found at i:21896043 original size:26 final size:26
Alignment explanation
Indices: 21896013--21896065 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21896003 GTTGACTTAG
*
21896013 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
21896039 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21896065 G
1 G
21896066 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21896512 original size:158 final size:157
Alignment explanation
Indices: 21896039--21896539 Score: 505
Period size: 159 Copynumber: 3.2 Consensus size: 157
21896029 CCTAGTCTAA
* * *
21896039 GCATACAGAGTTCATTCCCA-GTCTAAGATCGAACCGAACTGAGGGTTGCGACAGCAGGATCGGT
1 GCATACAGAGTTCATT-CCATGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGATCGAT
* * * * *
21896103 AGCATGC-GGGGGGA-CTGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCAG-CTGGTTGAGT
65 AGCATGCAGGGGGGATC-GGGCTGATCCCTAGCTTGCGCATTCTGCCTCTCCAGCCT-GCTGAGC
*
21896165 GCCCGTACGCCTATTTCATGGGTTGGCTTAG
128 GCCCGTACGCTTATTTCATGGGTT-GCTTAG
* ** * * * * * *
21896196 GCATTA-GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGAT
1 GCA-TACAGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGATCGAT
* * * * * *
21896260 AGTACGCAGAGGGGGATCGGG-TCGATCCCTAGCTTGCGCATTATGCCTTTTC-GACCTGCTCAG
65 AGCATGCAG-GGGGGATCGGGCT-GATCCCTAGCTTGCGCATTCTGCCTCTCCAG-CCTGCTGAG
* *
21896323 CGCCCATACGCTCATTTCATGGGTTGACTTAG
127 CGCCCGTACGCTTATTTCATGGGTTG-CTTAG
* * * *
21896355 GCATACAGAGTTCATTCCCA-GTCTAAGATTGGATCGGACCGAGGGTTGCGACAGCAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGATCGAT
* * * *
21896419 AGCATGCAGGGGGGATCGGGCTGATCCCCAGCTTGTGCATTCTACCTCTCCAGCCTGCTGAGCAC
65 AGCATGCAGGGGGGATCGGGCTGATCCCTAGCTTGCGCATTCTGCCTCTCCAGCCTGCTGAGCGC
* * * *
21896484 ACGCACGCTTGTTTTATGGGTTAGCTTAG
130 CCGTACGCTTATTTCATGGGTT-GCTTAG
21896513 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
21896540 CATATGGAGT
Statistics
Matches: 274, Mismatches: 55, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
156 3 0.01
157 53 0.19
158 95 0.35
159 117 0.43
160 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGATCGATA
GCATGCAGGGGGGATCGGGCTGATCCCTAGCTTGCGCATTCTGCCTCTCCAGCCTGCTGAGCGCC
CGTACGCTTATTTCATGGGTTGCTTAG
Found at i:21896904 original size:26 final size:26
Alignment explanation
Indices: 21896868--21896920 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21896858 CTTGACTCAG
*
21896868 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
21896894 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21896920 G
1 G
21896921 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21897407 original size:25 final size:26
Alignment explanation
Indices: 21897369--21897420 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
21897359 GTTGGCTTAG
21897369 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21897395 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21897420 G
1 G
21897421 ATCAGACAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21897776 original size:26 final size:26
Alignment explanation
Indices: 21897738--21897788 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
21897728 TGACTTAGGT
*
21897738 ATACGGAGGTCA-TCCTCAGTCTAAGC
1 ATACAGAGGTCATTCC-CAGTCTAAGC
*
21897764 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGGTCATTCCCAGTCTAAG
21897789 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACAGAGGTCATTCCCAGTCTAAGC
Found at i:21898231 original size:26 final size:26
Alignment explanation
Indices: 21898202--21898254 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21898192 GTTGGCTTAG
21898202 GCATACAGAGTCCATT-CCATGTCTAA
1 GCATACAGAGTCCATTCCCA-GTCTAA
* *
21898228 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
21898254 G
1 G
21898255 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:21899521 original size:26 final size:26
Alignment explanation
Indices: 21899485--21899537 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21899475 GTTGACTTAG
21899485 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* **
21899511 GCATATAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21899537 G
1 G
21899538 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21901087 original size:26 final size:26
Alignment explanation
Indices: 21901058--21901113 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
21901048 TGGGTTGACT
*
21901058 TAAGTATACGGAGTTCATGCCCAGTC
1 TAAGCATACGGAGTTCATGCCCAGTC
* *
21901084 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATGCCCAGTC
21901110 TAAG
1 TAAG
21901114 ATCAAACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATGCCCAGTC
Found at i:21901193 original size:197 final size:197
Alignment explanation
Indices: 21900834--21901201 Score: 461
Period size: 197 Copynumber: 1.9 Consensus size: 197
21900824 CGGCTGATCA
* * * * *
21900834 CCCGCACGCTCGTTTCGTGGGTTGGCTGAGGCATATGGAGTTCATTCCCTATCTAAGCATACAGA
1 CCCGCACGCTCGGTTCGTGGGTTGACTGAAGCATACGGAGTTCATGCCCTATCTAAGCATACAGA
** * * * *
21900899 GTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCAGGATCGACAGCACATAAG
66 GTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAGCAGCAAGATCGACAGCACACAAG
** *
21900964 AGGGACCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCAATCGACCTCTCCAGCCGACTGAG
131 AGGGACCGGGTCGATCCCCAGCTTACGCATTCTACCTCTCCAATCGACCTCTCCAGCCGACTGAG
21901029 TG
196 TG
* * * *
21901031 CCCGCGCGCTCGGTTCGTGGGTTGACTTAAGTATACGGAGTTCATGCCC-AGTCTAAGCATACGG
1 CCCGCACGCTCGGTTCGTGGGTTGACTGAAGCATACGGAGTTCATGCCCTA-TCTAAGCATACAG
* ** **
21901095 AGTTCATTCCTAGTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGCAAGATCGGTAGCACAC-A
65 AGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAGCAGCAAGATCGACAGCACACAA
** **
21901159 GAGGGGATTGGGTCGATCCCCAGCTTGTGCATTCTACCTCTCC
130 GA-GGGACCGGGTCGATCCCCAGCTTACGCATTCTACCTCTCC
21901202 GGCCAGTTGA
Statistics
Matches: 142, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
196 4 0.03
197 138 0.97
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (197 bp):
CCCGCACGCTCGGTTCGTGGGTTGACTGAAGCATACGGAGTTCATGCCCTATCTAAGCATACAGA
GTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAGCAGCAAGATCGACAGCACACAAG
AGGGACCGGGTCGATCCCCAGCTTACGCATTCTACCTCTCCAATCGACCTCTCCAGCCGACTGAG
TG
Found at i:21901395 original size:159 final size:158
Alignment explanation
Indices: 21901087--21901431 Score: 435
Period size: 159 Copynumber: 2.2 Consensus size: 158
21901077 CCCAGTCTAA
** * * *
21901087 GCATACGGAGTTCATTCC-TAGTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGCAAGATCGGT
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAAGATCGGC
* * * * *
21901151 AGCACACAGAGGGGATTGGGTCGATCCCCAGCTTGTGCATTCTACCTCTCCGGCCAGTTGAGCGC
65 AGCACACAGAGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCAC
* *
21901216 CCGCACCCCCGTTTCGTGGGTTGGCTTAG
130 CCGCACCCCCGTTCCATGGGTTGGCTTAG
* * * **
21901245 GCATAGGGAGTTTATTCCATTTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGAT-GGCC
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAAGATCGG-C
* * *
21901309 AGCATACAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCC-GACTGAGC
65 AGCACACAGA-GGGGACTGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGCCAG-CTGAGC
* *
21901373 ACCCGCACGCTCGTTCCATGGGTTGGCTTAG
128 ACCCGCACCCCCGTTCCATGGGTTGGCTTAG
21901404 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
21901432 ATACCGAGTT
Statistics
Matches: 158, Mismatches: 25, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
157 2 0.01
158 59 0.37
159 97 0.61
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAAGATCGGCA
GCACACAGAGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCACC
CGCACCCCCGTTCCATGGGTTGGCTTAG
Found at i:21901433 original size:26 final size:26
Alignment explanation
Indices: 21901404--21901456 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21901394 GTTGGCTTAG
*
21901404 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACCGAGTTCATTCCTA-GTCTAA
21901430 GCATACCGAGTTCATTCCTAGTCTAA
1 GCATACCGAGTTCATTCCTAGTCTAA
21901456 G
1 G
21901457 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCTAGTCTAA
Found at i:21902138 original size:26 final size:26
Alignment explanation
Indices: 21902102--21902151 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
21902092 AACTTAGGCG
*
21902102 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAATCTAAGCA
*
21902128 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATCCCCAATCTAAG
21902152 ATCAGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAATCTAAGCA
Found at i:21902416 original size:159 final size:159
Alignment explanation
Indices: 21902161--21902628 Score: 419
Period size: 159 Copynumber: 2.9 Consensus size: 159
21902151 GATCAGATCG
** * *
21902161 GACCGAGGGTTGCAACAGTAGGA-TCGACAGCACGCA--AGGGGGATCGGGTCGAT-CCTCAGCT
1 GACCGAGGGTTGTGACAGCAGGACT-GACAGCACGCATGAGGGGGATCGGGTCGATCCCT-GGCT
* * * *
21902222 TGCGCAATTTGCCTCTCCTGTCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCAT
64 TGCAC-ATTTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCAT
** * *
21902287 AGGGAGTTCATTCCATGTCTAAGCCCTAGCCA
128 ACAGAGTTCATTCCATGTCTAAGCCCGAACCA
* ** ** * * * *
21902319 GATCGAGGGTTGTGGTAGTGGGACTGGCAGCATGTA-GAGGGGGATCGGATCGATCCCTGGCTTG
1 GACCGAGGGTTGTGACAGCAGGACTGACAGCACGCATGAGGGGGATCGGGTCGATCCCTGGCTTG
* * * * * * * ** *
21902383 CACATTATGCCTCTTCGGTCGGCTCAACACCCGCATGCTCGTTTCGTGGTTTAACTTAGGCACAC
66 CACATT-TGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAC
* ** **
21902448 AAAGTTCATTACCA-GTCTAAGATCGAACTG
130 AGAGTTCATT-CCATGTCTAAGCCCGAACCA
* * * * * *
21902478 GACCGAGGGTTGTGACAGCAGGATTGATAGCACGCATG-GGGGGATCGGGCCGGTCCTTGACTTG
1 GACCGAGGGTTGTGACAGCAGGACTGACAGCACGCATGAGGGGGATCGGGTCGATCCCTGGCTTG
* ** *
21902542 CTCATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAC
66 CACATT-TGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAC
21902607 AGAGTTCATTCCATGTCTAAGC
130 AGAGTTCATTCCATGTCTAAGC
21902629 ATATGGAGTT
Statistics
Matches: 237, Mismatches: 66, Indels: 13
0.75 0.21 0.04
Matches are distributed among these distances:
158 31 0.13
159 199 0.84
160 7 0.03
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
GACCGAGGGTTGTGACAGCAGGACTGACAGCACGCATGAGGGGGATCGGGTCGATCCCTGGCTTG
CACATTTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACA
GAGTTCATTCCATGTCTAAGCCCGAACCA
Found at i:21902631 original size:26 final size:26
Alignment explanation
Indices: 21902601--21902653 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21902591 GTTGGCTTAG
21902601 GCATACAGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
**
21902627 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
21902653 G
1 G
21902654 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:21902786 original size:184 final size:184
Alignment explanation
Indices: 21902535--21902996 Score: 519
Period size: 184 Copynumber: 2.5 Consensus size: 184
21902525 GGCCGGTCCT
* * * * * * *
21902535 TGACTTGCTCATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTA
1 TGACTTACGCATTCTACCTCTCCGGCCAGCTGAGCACCCGCAAGCTCATTTCATGGGTTGGCTTA
* *
21902600 GGCATACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATT-CTCAGTCTAAGATCAGATCGG
66 GGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCT-AGTCTAAGATCAGACCGG
* * *
21902664 ACC-AGGGGTTGCTGCAG-CAGGATC-GCAGCATGC-CGGGGGGGACCGAGCCT-ATCCC
130 ACCGA-GGGTTGCGGCAGCCA-GATCGGCAGCA--CACAGGGGGGACC-AGACTGATCCC
* ** * * *
21902719 TGGCTTACGCATTCTACCTCTCCGATC-GACTGAG-AGCCCGTAAGCTCGTTTCATGGGTTGACT
1 TGACTTACGCATTCTACCTCTCCGGCCAG-CTGAGCA-CCCGCAAGCTCATTTCATGGGTTGGCT
* *
21902782 TAGGCATACAGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACC
64 TAGGCATACAGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC
*
21902846 GGACCGAGGGTTGCGGCAGCCAGATCGGTAGCACACAGGGGGGACCAGACTGATCCC
128 GGACCGAGGGTTGCGGCAGCCAGATCGGCAGCACACAGGGGGGACCAGACTGATCCC
* * * * * *
21902903 TGACTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCACCCGCACGCCCACTTCGTGGGTTGGCTTA
1 TGACTTACGCATTCTACCTCTCCGGCCAGCTGAGCACCCGCAAGCTCATTTCATGGGTTGGCTTA
**
21902968 GGCATAGGGAGTTCATTCCATGTCTAAGC
66 GGCATACAGAGTTCATTCCATGTCTAAGC
21902997 CCCAGTCGGA
Statistics
Matches: 233, Mismatches: 33, Indels: 24
0.80 0.11 0.08
Matches are distributed among these distances:
183 10 0.04
184 208 0.89
185 15 0.06
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.24
Consensus pattern (184 bp):
TGACTTACGCATTCTACCTCTCCGGCCAGCTGAGCACCCGCAAGCTCATTTCATGGGTTGGCTTA
GGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGA
CCGAGGGTTGCGGCAGCCAGATCGGCAGCACACAGGGGGGACCAGACTGATCCC
Found at i:21902815 original size:26 final size:26
Alignment explanation
Indices: 21902785--21902837 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21902775 GTTGACTTAG
21902785 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
21902811 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21902837 G
1 G
21902838 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21909646 original size:26 final size:26
Alignment explanation
Indices: 21909610--21909662 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21909600 GTTGGCTTAG
21909610 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
21909636 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21909662 G
1 G
21909663 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21909799 original size:12 final size:12
Alignment explanation
Indices: 21909782--21909812 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
21909772 CGAGGGTTGT
21909782 GGCAGCAGGACC
1 GGCAGCAGGACC
*
21909794 GGCAGCAGGATC
1 GGCAGCAGGACC
21909806 GGCAGCA
1 GGCAGCA
21909813 CGCAAGGGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.29, G:0.42, T:0.03
Consensus pattern (12 bp):
GGCAGCAGGACC
Found at i:21910085 original size:158 final size:158
Alignment explanation
Indices: 21909794--21910127 Score: 537
Period size: 158 Copynumber: 2.1 Consensus size: 158
21909784 CAGCAGGACC
* *
21909794 GGCAGCAGGATCGGCAGCACGCAAGGGGGGATCAAGCCGATCCTCGGCTTGCGCATTCTACTCTC
1 GGCAGCAGGACCGGCAGCACGCAAGGGGGGACCAAGCCGATCCTCGGCTTGCGCATTCTACTCTC
* *
21909859 CGACCGGTTGAGTGCCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGATTTCATTCCATG
66 CGACCGGCTGAGTGCCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
21909924 TCTAAGCCCCAGCCAGACCGAGGGTTGT
131 TCTAAGCCCCAGCCAGACCGAGGGTTGT
* ** * *
21909952 GGTAGCAGGACCGGCAGCACGC-AGGGGGGACCGGGCCGATCCTCGGCTTGCTCATTCTGCCTCT
1 GGCAGCAGGACCGGCAGCACGCAAGGGGGGACCAAGCCGATCCTCGGCTTGCGCATTCT-ACTCT
21910016 CC-AGCCGGCTGAGTGCCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
65 CCGA-CCGGCTGAGTGCCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
*
21910080 TGTCTAAGCCCCAGCTAGACCGAGGGTTGT
129 TGTCTAAGCCCCAGCCAGACCGAGGGTTGT
*
21910110 GGCAGCAGGACTGGCAGC
1 GGCAGCAGGACCGGCAGC
21910128 GAGATCGGCA
Statistics
Matches: 162, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
157 33 0.20
158 129 0.80
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (158 bp):
GGCAGCAGGACCGGCAGCACGCAAGGGGGGACCAAGCCGATCCTCGGCTTGCGCATTCTACTCTC
CGACCGGCTGAGTGCCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
TCTAAGCCCCAGCCAGACCGAGGGTTGT
Found at i:21910972 original size:26 final size:26
Alignment explanation
Indices: 21910936--21910988 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21910926 GTTGACTTAG
*
21910936 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21910962 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21910988 G
1 G
21910989 ATCAGACAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21911461 original size:158 final size:157
Alignment explanation
Indices: 21910962--21911463 Score: 473
Period size: 158 Copynumber: 3.2 Consensus size: 157
21910952 CCCAGTCTAA
* *
21910962 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGA-TCGAGGGTTGCGACAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACAAGACT-GAGGGTTGCGACAGCAGGATCGAC
* * * * *
21911026 AACACACAGGGGGGACCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCTGGCCGGCTGAGCGC
65 AGCACACAGGGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCTGACCGGCCGAGCGC
* *
21911091 CCGCACG-TCCGTTTTGTGGGTTGGCTTAG
130 CAGCACGCT-CGTTTCGTGGGTT-GCTTAG
* *** * * ** * * *
21911120 GCATAGGGAGTTCATT-CCATGTCTAATCCCCAACCAGACCAAGGGTTGTGGCAGCGGGATCGGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACAAGACTGAGGGTTGCGACAGCAGGATC-GA
* * * * *
21911184 -AGCACGCAGAGGGGGATC-GGCTCGATCCCTGTCTTGCGCATTATGCC-CTTTCGACCGGCTC-
64 CAGCACACAG-GGGGGACCGGGC-CGATCCCTGACTTGCGCATTCTGCCTCTCT-GACCGGC-CG
* ** * *
21911245 AACGCTTGCACACTCGTTTCGTGGGTTGACTTAT
125 AGCGCCAGCACGCTCGTTTCGTGGGTTG-CTTAG
* * ** *
21911279 GCAGATGGAGTTCATTCCCAGTCTAAGATCAAACTGGACTGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACAAGACTGAGGGTTGCGACAGCAGGATCGACA
* * *
21911344 GCACTCAGGGGGGACCGGGCCGATTCCCTG-CTTGCGCATTCTGCCTCTCTGATCGACCGAGCGC
66 GCACACAGGGGGGACCGGGCCGA-TCCCTGACTTGCGCATTCTGCCTCTCTGACCGGCCGAGCGC
*
21911408 CAGCACGCTCGTTTCGTAGGTTAGCTTAG
130 CAGCACGCTCGTTTCGTGGGTT-GCTTAG
21911437 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
21911464 CATATGGAGT
Statistics
Matches: 270, Mismatches: 57, Indels: 34
0.75 0.16 0.09
Matches are distributed among these distances:
157 7 0.03
158 136 0.50
159 123 0.46
160 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACAAGACTGAGGGTTGCGACAGCAGGATCGACA
GCACACAGGGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCTGACCGGCCGAGCGCC
AGCACGCTCGTTTCGTGGGTTGCTTAG
Found at i:21911486 original size:26 final size:26
Alignment explanation
Indices: 21911437--21911487 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
21911427 GTTAGCTTAG
*
21911437 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAGGTCTAA
* *
21911463 GCATATGGAGTTCATTCCCGGTCTA
1 GCATACGGAGTTCATTCCAGGTCTA
21911488 TGATTTTGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAGGTCTAA
Found at i:21912551 original size:26 final size:26
Alignment explanation
Indices: 21912515--21912566 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21912505 GTTGACTTAG
21912515 GCATACAGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
*
21912541 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21912567 AATCTAACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21913167 original size:343 final size:331
Alignment explanation
Indices: 21912481--21913203 Score: 770
Period size: 343 Copynumber: 2.1 Consensus size: 331
21912471 TGGCTGACTG
* * * * * *
21912481 AGCACCCACACACTCATTTTATGGGTTGACTTAGGCATACAGAGTTCATCTCCAGTCTAAGCATA
1 AGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATA
* *
21912546 CGGAGTTCATTCCCAGTCTAAAATCTAACCGAACCAAGGGTTACGGTAGCATGCAGGGGGGACCG
66 CGGAGTTCATTCCCAGTCTAAAATCGAACCGAACCAAGGGTTACGGTAGCATGCAGGAGGGACCG
* * * * ** *
21912611 GGCTGATCCCCGGCTTTCGCATTCTACCTCTTCGACCGGTTGAGCACCCGCACGCCTGTTTCATG
131 GACCGATCCCCAGCTTTCGCATTCTACCTCTCCGACCGACTGAGCACCCGCACGCCTATTTCATG
* * * *
21912676 GGTTGGCTAAGGCATAGGGAGTTCATTCCATCTGTAACCCCCAGTCGGACCGAGGGTTGTGGCAG
196 GGTTGGCTAAGGCATAGGGAGTTAATTCCATCTCTAACCCCCAGCCAGACCGAGGGTTGTGGCAG
* * * * ** * * *
21912741 CGGGACCAGCAGCACGCAGAGGGGGATCAGGCCAATCCGCGGCTTGTGCATTCTGCCTTTTCGAT
261 CGGGACCAACAGCACGCAAAGGGGGACCAGGCCAATCCCCGGCTTACGCATTATGCCTCTTCGAC
* *
21912806 TGGCTG
326 CGGCTC
* *
21912812 AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCGTCCCCAATCTAAGCATA
1 AGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATA
* * * * * * *
21912877 TGGAGTTCATTCCTAGTCTAAGATCGAACTGGACCGAGGGTTGCGATAGCAGGATCGACATCACG
66 CGGAGTTCATTCCCAGTCTAAAATCGAACCGAACCAAGGG-T----TA-C-GG-TAG-CAT---G
* * *
21912942 CAGGAGGGACCGGACCGGTCCCCAGCTTGT-GCATTCTGCCTCTCCGACCGACTGAGCGCCCGCA
119 CAGGAGGGACCGGACCGATCCCCAGCTT-TCGCATTCTACCTCTCCGACCGACTGAGCACCCGCA
* * * *
21913006 CG-CTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGCCAGACT
183 CGCCT-ATTTCATGGGTTGGCTAAGGCATAGGGAGTTAATTCCATCTCTAACCCCCAGCCAGACC
* * * *
21913070 GAGGGTTGTGGTAGTGGGATCAACAGCACGCAAAGGGGGACC-GAGCCGATCCCCGGCTTACGCA
247 GAGGGTTGTGGCAGCGGGACCAACAGCACGCAAAGGGGGACCAG-GCCAATCCCCGGCTTACGCA
*
21913134 TTATGCCTCTTCGGCCGGCTC
311 TTATGCCTCTTCGACCGGCTC
* * * * *
21913155 AGCACTCGCACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
1 AGCACCCGCACGCTC-ATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
21913204 TCCATGTCTA
Statistics
Matches: 318, Mismatches: 58, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
331 90 0.28
332 1 0.00
336 2 0.01
337 1 0.00
338 2 0.01
339 2 0.01
340 3 0.01
342 4 0.01
343 212 0.67
344 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (331 bp):
AGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATA
CGGAGTTCATTCCCAGTCTAAAATCGAACCGAACCAAGGGTTACGGTAGCATGCAGGAGGGACCG
GACCGATCCCCAGCTTTCGCATTCTACCTCTCCGACCGACTGAGCACCCGCACGCCTATTTCATG
GGTTGGCTAAGGCATAGGGAGTTAATTCCATCTCTAACCCCCAGCCAGACCGAGGGTTGTGGCAG
CGGGACCAACAGCACGCAAAGGGGGACCAGGCCAATCCCCGGCTTACGCATTATGCCTCTTCGAC
CGGCTC
Found at i:21913186 original size:159 final size:159
Alignment explanation
Indices: 21912908--21913533 Score: 618
Period size: 159 Copynumber: 3.9 Consensus size: 159
21912898 GATCGAACTG
* * * * * * *
21912908 GACCGAGGGTTGCGATAGCAGGATCGACATCACGC--AGGAGGGACCGGACCGGTCCCCAGCTTG
1 GACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAAAGG-GGGACCGGGCCGATCCCCGGCTTG
* * * ** * * * * *
21912971 TGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAG
65 CGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
*
21913036 GGAGTTAATTCCATGTCTAAGCCCCAGCCA
130 GGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * *
21913066 GACTGAGGGTTGTGGTAGTGGGATCAACAGCACGCAAAGGGGGACCGAGCCGATCCCCGGCTTAC
1 GACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAAAGGGGGACCGGGCCGATCCCCGGCTTGC
* * * *
21913131 GCATTATGCCTCTTCGGCCGGCTCAGCACTCGCACGC-CTGTTTCGTGGGTTGGCTTAGGCATAG
66 GCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATAC
21913195 GGAGTTCATTCCATGTCTAAGCCCCAGCCA
130 GGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * ** * * *
21913225 GACCAAGGGTTGTGGTAGCAAAACCGGCAGCACGCAGAA-GGGGACCGGGCCGATCCCCAGCTTG
1 GACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCA-AAGGGGGACCGGGCCGATCCCCGGCTTG
* * * *
21913289 CGCATTATGCCTCTTCGGTCGACTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTATGCATAC
65 CGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* **** **
21913354 AGAGTTCATTCCCA-GTCTAAGATTGAATC-
130 GGAGTTCATT-CCATGTCTAAGCCCCAGCCA
* * * * * * *
21913383 GAACCGAGGGTTGCGATAGTAGGATCGACAGCACAC-AGGGGGGGCCGGGTCGATCCCCGTCTTG
1 G-ACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAAAGGGGGACCGGGCCGATCCCCGGCTTG
* * * * * * * *
21913447 CGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCAGGCTCATTTCGTGGGTTGGCTTCGACATAC
65 CGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
21913512 GGAGTTCATTCCATGTCTAAGC
130 GGAGTTCATTCCATGTCTAAGC
21913534 ATACGGAGTT
Statistics
Matches: 381, Mismatches: 78, Indels: 18
0.80 0.16 0.04
Matches are distributed among these distances:
157 4 0.01
158 120 0.31
159 248 0.65
160 9 0.02
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
GACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAAAGGGGGACCGGGCCGATCCCCGGCTTGC
GCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAGCCA
Found at i:21914268 original size:26 final size:26
Alignment explanation
Indices: 21914239--21914291 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21914229 GTAGACTTAG
21914239 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21914265 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21914291 G
1 G
21914292 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21914575 original size:159 final size:158
Alignment explanation
Indices: 21914265--21914768 Score: 473
Period size: 158 Copynumber: 3.2 Consensus size: 158
21914255 CCCAGTCTAA
* *** * * * *
21914265 GCATACTGAGTTCATTCCCA-GTCTAAG-ATTGGACCGGACCGAGGGTTACGGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCAAGGGCTGCGGTAGCAGGATCGA
* * * * * *
21914328 TAGCACATAGGGGGGACCCGACCGATCCCCGACTTGCGTAATCTGCCTCTCCGGTCAGCTGC-GC
65 TAACACATA-GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCT-CAGC
* * * * * *
21914392 GCTCGCACACCCATTTTGTTGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
21914423 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCAAGGGCTGTGGTAGCGGGATCGGT
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGCTGCGGTAGCAGGATCGAT
* * *
21914487 AACACATAGAAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTTTCCGGTCGGCTCAGCG
66 AACACATAG--GGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCG
*
21914552 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * *
21914582 GCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAGACCAAGGGCTGCGGTAGCAGGATCGA
* * * * * * ** *
21914645 CAGCACGCAT-GGGGGACCGGGCTGGTCCCTGACTTGTGCATTCTGCCTCTCCGACCGGCTGAGC
65 TA--ACACATAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTCAGC
* *
21914709 ACCCGTACGCTCGTTTCGTGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
21914740 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
21914769 TACGGAGTTC
Statistics
Matches: 280, Mismatches: 55, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.01
158 153 0.55
159 117 0.42
160 1 0.00
161 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGCTGCGGTAGCAGGATCGAT
AACACATAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:21914769 original size:26 final size:26
Alignment explanation
Indices: 21914740--21914791 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21914730 GTTGGCTTAG
21914740 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21914766 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21914792 TATTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21915480 original size:26 final size:26
Alignment explanation
Indices: 21915444--21915493 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
21915434 GTTGACTTAG
21915444 GCATACGGAGTTAATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
* *
21915470 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTAATCCCCAGTCT
21915494 CAGATCGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:21916735 original size:158 final size:158
Alignment explanation
Indices: 21916381--21916760 Score: 396
Period size: 158 Copynumber: 2.4 Consensus size: 158
21916371 CGCCCGTTCG
*** *
21916381 TGGGTTGGCTTAGGCATTGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGC
1 TGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGATTGTGGC
* *
21916446 AACGGGACCGAAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCACATTATGCCTCTTCGG
66 AACAGGACCGAAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCACATTATGCCTCTCCGG
*
21916511 TCGGCTCAGCGCCCGCACACTCATTTCG
131 TCGGCTCAGCGCCCGCACACTCATTTCA
* * * ** * *
21916539 TGGGTTGACTTATGCATACAGAGTTCATTCCCA-CTCTAAG-ATCTGATTGGACCG-GGCATTGT
1 TGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGG-ATTGT
** * * * * * *
21916601 GGCAGTAGGATCGACAGCACGTA-AGGGGGATCGGGCCTATCCTTGGCTTGCACATTCTGCCTCT
63 GGCAACAGGACCGA-AGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCACATTATGCCTCT
* * * *
21916665 CCGG-CTGGCTGAGTGCCC-CTACGCTCGTTTCA
127 CCGGTC-GGCTCAGCGCCCGC-ACACTCATTTCA
* *
21916697 TGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCTAG-CTGGACTGAGGATTGTGG
1 TGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCGAGGATTGTGG
21916761 TAGCAAGACC
Statistics
Matches: 177, Mismatches: 35, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
157 9 0.05
158 155 0.88
159 13 0.07
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
TGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGATTGTGGC
AACAGGACCGAAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCACATTATGCCTCTCCGG
TCGGCTCAGCGCCCGCACACTCATTTCA
Found at i:21917209 original size:316 final size:316
Alignment explanation
Indices: 21916274--21917223 Score: 896
Period size: 316 Copynumber: 3.0 Consensus size: 316
21916264 ACTTAGGCAT
* * * * * * *
21916274 ATCGAGAGTTGCGGTAGCAGGATCGACATCACGCAGGGTGGATCGGGCCGATCCTCGGCTTGTGC
1 ATCGAGGGTTGCGGCAGTAGGATCGACAGCACGTAGGG-GGATCGGGCCGATCCTTGGCTTGCGC
* * * * * * *
21916339 ATTCTGCTTTTCTGACCGGTTGAGCACCCGCACGCCCG-TTCGTGGGTTGGCTTAGGCATTGGGA
65 ATTCTGCCTCTCCGACCGGCTGAGCACCCGCATGGCCGTTTCGTGGGTTGGCTTAGGCATAGGGA
* ** * * *
21916403 GTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAACGGGAC-CGAAGCACGCAGA
130 GTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGTGGGACTGGCAGCACACAGA
* * * * * *
21916467 GGGGGACCGGGCCGATCC-CTGGCTTGCACATTATGCCTCT-TCGGTCGGCTCAGCGCCCGCACA
195 GGGGGACAGCGTCGATCCTC-GGCTTGCGCATTATGCCTCTCT-GGTCGGCTGAGCGCCCGCACG
* * * * * * ** **
21916530 CTCATTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCACTCTAAGATCTGATTGG
258 CTCGTTTCGTGGGTTGACTTAAGCAAACGGAGTTCATTCCAAGTCTAAGATAAGACCGG
* * * * *
21916589 ACCG-GGCATTGTGGCAGTAGGATCGACAGCACGTAAGGGGGATCGGGCCTATCCTTGGCTTGCA
1 ATCGAGG-GTTGCGGCAGTAGGATCGACAGCACGT-AGGGGGATCGGGCCGATCCTTGGCTTGCG
* * ** * * *
21916653 CATTCTGCCTCTCCGGCTGGCTGAGTGCCC-C-TACGCTCGTTTCATGGGTTGGCTTAGGCATAC
64 CATTCTGCCTCTCCGACCGGCTGAGCACCCGCAT-GGC-CGTTTCGTGGGTTGGCTTAGGCATAG
* * *
21916716 AGAGTTCATTCCATGTCTAAGCCCTAG-CTGGACTGAGGATTGTGGTAGCAAGACCGGCAGTGGG
127 GGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACTGAGG---GT--T-----G--TGGCAGTGGG
* * * * **
21916780 A-TCGGCAGCACATAGAGGGGGACCAAGC-T-GATTCTCGGCTTGCGTATTATGCCTCTCCGACC
179 ACT-GGCAGCACACAGAGGGGGA-C-AGCGTCGATCCTCGGCTTGCGCATTATGCCTCTCTGGTC
* * * *
21916842 GGCTGAGCTCCCACACGCTCGTTTCGTGGGTTGACTTAAGCAGACGGAGTTCATTCCTAGTCTAA
241 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCAAACGGAGTTCATTCCAAGTCTAA
21916907 GATAAGACCGG
306 GATAAGACCGG
* * * *
21916918 ATCGAGGGTGGCGGCAGTAGGATCGGCAGCACGTAGGGGGATTGGGCCGATCCTTAGCTTGCGCA
1 ATCGAGGGTTGCGGCAGTAGGATCGACAGCACGTAGGGGGATCGGGCCGATCCTTGGCTTGCGCA
* *** * *
21916983 TTCTGCCTCTCCGACCGACTGAGCACCCGCATGGCCGTTTCGTACATTTGCTTAGCCATAGGGAG
66 TTCTGCCTCTCCGACCGGCTGAGCACCCGCATGGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAG
* *
21917048 TTCATTCCATGTCTAAGCCCCAGTCAGACTGAGGGTTGTGGCAGTGAGACTGGCAGCACACAGAG
131 TTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGTGGGACTGGCAGCACACAGAG
* * * *
21917113 GGGGACTGCGTCGATCCTCGACTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCTGCACGCTC
196 GGGGACAGCGTCGATCCTCGGCTTGCGCATTATGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTC
* * *
21917178 GTTTCATGGGTTGGCTTAGGCAAACGGAGTTCATTCCAAGTCTAAG
261 GTTTCGTGGGTTGACTTAAGCAAACGGAGTTCATTCCAAGTCTAAG
21917224 CATATGGAGT
Statistics
Matches: 501, Mismatches: 103, Indels: 61
0.75 0.15 0.09
Matches are distributed among these distances:
314 5 0.01
315 72 0.14
316 168 0.34
317 1 0.00
318 1 0.00
319 2 0.00
321 1 0.00
323 1 0.00
325 2 0.00
326 1 0.00
328 110 0.22
329 131 0.26
330 5 0.01
331 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (316 bp):
ATCGAGGGTTGCGGCAGTAGGATCGACAGCACGTAGGGGGATCGGGCCGATCCTTGGCTTGCGCA
TTCTGCCTCTCCGACCGGCTGAGCACCCGCATGGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAG
TTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGTGGGACTGGCAGCACACAGAG
GGGGACAGCGTCGATCCTCGGCTTGCGCATTATGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAAGCAAACGGAGTTCATTCCAAGTCTAAGATAAGACCGG
Found at i:21917983 original size:26 final size:26
Alignment explanation
Indices: 21917934--21917984 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21917924 TTGACTTAGG
*
21917934 CATACAGAGTTCATCCCTAGTCTAAT
1 CATACAGAGTTCATCCCTAATCTAAT
21917960 CATACAGAGTTCATTCCC-AATCTAA
1 CATACAGAGTTCA-TCCCTAATCTAA
21917985 GATCAAACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.33, C:0.27, G:0.10, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATCCCTAATCTAAT
Found at i:21918652 original size:680 final size:679
Alignment explanation
Indices: 21917351--21918667 Score: 2149
Period size: 680 Copynumber: 1.9 Consensus size: 679
21917341 AAGCATCGTC
21917351 GGAGAGCCTAACCGACGGCATTGGGGGTTCCGACGATTGGGGGGCCGAGGGGTGTGCGCACATGA
1 GGAGAGCCTAACCGACGGCATTGGGGGTTCCGACGATTGGGGGGCCGAGGGGTGTGCGCACATGA
21917416 TGTGCGATGGGTGCTGGTACTTGGAACTTATATTGGCCCCCTTATCCCTCATCAAACCTCGAGAA
66 TGTGCGATGGGTGCTGGTACTTGGAACTTATATTGGCCCCCTTATCCCTCATCAAACCTCGAGAA
** *
21917481 CTCACATGCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATGTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * ** *
21917546 GAAATGGGGACACTATTTCAAACGGTCACAAAATCTTCTCTACTTCGAGTTTTTAGCTGACTTTT
196 GAAATGGGGACACTATTTCAAACGGTCACAAAATCTTCTCCACATCGAGTTTTTAGCTGAAATGT
* *
21917611 TTTGTGCAGGCCAACAAAAATACAAGGATCACCTCTAGCAAATTTTGGGACAAAACTCTTTCTAA
261 TTTGTGCAGGCCAACAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAA
* *
21917676 AAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTAGAAAATCGTGAAAAATAGAAAACGGGTCG
326 AAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTAGAAAATCATGAAAAATAGAAAACGGGTCG
*
21917741 TGTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAAT
391 TCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
21917806 GAAAATGGCATTGCAAAAATAAGAAGATGTGCTTGAACACACCTACCATCCGTTCGATCCTCGGC
456 GAAAATGGCATTGCAAAAATAAGAAGATGTGCTTGAACACACCTACCACCCGTTCGATCCTCGGC
* * *
21917871 TTGCGCATCCTACCTCTCTGGTCGGCAGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
521 TTACGCATCCTACCTCCCTGGTCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * *
21917936 TACAGAGTTCATCCCTAGTCTAATCATACAGAGTTCATTCCCAATCTAAGATCAAACCGGATTGA
586 TACAGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAAACCGGATTGA
21918001 GGGTTACGGTAGTAGGATCATGCATCACT
651 GGGTTACGGTAGTAGGATCATGCATCACT
* * * * * *
21918030 GGAGAGCCTAACCGGCGGCATTGGGGGTTTCGATGATTGGGGGGGCTGGGGGGTGTGCGCAGATG
1 GGAGAGCCTAACCGACGGCATTGGGGGTTCCGACGATT-GGGGGGCCGAGGGGTGTGCGCACATG
* **
21918095 ATGTGCGATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCC-TATCCCTCATCAAACCTCGAGA
65 ATGTGCGATGGGTGCTGGTACTTGGAACTTATATTGGCCCCCTTATCCCTCATCAAACCTCGAGA
21918159 ACTCACACCCCCTTAAAGAGCATTTGAGATGTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
130 ACTCACACCCCCTTAAAGAGCATTTGAGATGTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
21918224 TGAAATGGGGACACTTTTCTCAAACGGTCACAAAATCTTCTCCACATCGAGTTTTTAGCTTAAAT
195 TGAAATGGGGACACTATT-TCAAACGGTCACAAAATCTTCTCCACATCGAGTTTTTAGCTGAAAT
* *
21918289 GTTTTGTGCATGCCAACAAAAATACAGGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCT
259 GTTTTGTGCAGGCCAACAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCT
21918354 AAAAAAATTTTAAAAAAT-CTCAAACCGTAAAAAGTTTCA-AAAATCATGAAAAATAGAAAACGG
324 AAAAAAATTTTAAAAAATCCT-AAACCGTAAAAAGTTT-AGAAAATCATGAAAAATAGAAAACGG
* *
21918417 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACACGCCATAA
387 GTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAA
** * * * *
21918482 AAATGGCATTGGCATTGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATTCC
452 AAATGAAAATGGCATTGCAAAAATAAGAAGATGTGCTTGAACACACCTACCACCCGTTCGA-TCC
* *
21918547 T-GGCTTACGCATCCTGCCTCCCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
516 TCGGCTTACGCATCCTACCTCCCTGGTCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
*
21918611 AGGCATACAGAGTTCATCCCCAATCTAAGCATA-AGGAGTTCATTCCCAGTCTAAGAT
581 AGGCATACAGAGTTCATCCCCAATCTAAGCATACA-GAGTTCATTCCCAATCTAAGAT
21918668 TGGACCGGAC
Statistics
Matches: 588, Mismatches: 44, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
679 139 0.24
680 444 0.76
681 5 0.01
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (679 bp):
GGAGAGCCTAACCGACGGCATTGGGGGTTCCGACGATTGGGGGGCCGAGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGAACTTATATTGGCCCCCTTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATGTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTATTTCAAACGGTCACAAAATCTTCTCCACATCGAGTTTTTAGCTGAAATGT
TTTGTGCAGGCCAACAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAA
AAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTAGAAAATCATGAAAAATAGAAAACGGGTCG
TCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GAAAATGGCATTGCAAAAATAAGAAGATGTGCTTGAACACACCTACCACCCGTTCGATCCTCGGC
TTACGCATCCTACCTCCCTGGTCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
TACAGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAAACCGGATTGA
GGGTTACGGTAGTAGGATCATGCATCACT
Done.