Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 212 of 402
Found at i:21918942 original size:159 final size:159
Alignment explanation
Indices: 21918639--21919459 Score: 521
Period size: 159 Copynumber: 5.2 Consensus size: 159
21918629 CCCAATCTAA
* * **** * * * * * * *
21918639 GCATAAGGAGTTCATTCCCAGTCTAAG-ATTGGACCGGACCAAGGGTTGCTGTAGCAGTATCGAT
1 GCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGACCGGACCGAGGGTTGCGGCAGCTGGAACGAC
* * * * * * * * *
21918703 AGCACGTAGGGGGGACCGGGCCGATCCCTGACTTGCACATTCTACCTCTCAGGCC-AGCTGAGCA
66 AGCACGAAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGA-CTCAGCA
* * * *
21918767 ACCGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CCCGCACACTCATTTCGTGGGTTGGCTTAG
* * * *
21918797 GAATAGGGAGTTCATTCCAAGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCTGTAACGGC
1 GCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGACCGGACCGAGGGTTGCGGCAGCTGGAACGAC
* * * * * * * *
21918861 CGCACGAAGAGGGGGACCAGGCCGATCCCCGACTTGTGTATTATGCCTCTTCAATCGACTCAGCA
66 AGCACGAAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAGCA
** *
21918926 CCCGCACACTCATTTCGTGGGTTGAATTAT
130 CCCGCACACTCATTTCGTGGGTTGGCTTAG
* * **** * *
21918956 GCAT-GCAGAGTTCATTCCCAGTCTAAG-ATTGGACCGGACTGAGGGTTGCGGCAGCAGGATA-G
1 GCATAG-GGAGTTCATTCCAAGTCTAAGCCCCAGACCGGACCGAGGGTTGCGGCAGCTGGA-ACG
* * * * * * * *
21919018 ATAGCAC-ACAGGAGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGA
64 ACAGCACGA-AGG-GGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCA
* * * * *
21919082 GCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAG
127 GCACCCGCACACTCATTTCGTGGGTTGGCTTAG
* * * ** * * *
21919115 GCATAGGGAGTTAATTCTACA-TCTATGCCCCAG-TTGGATCGAGGGTTGTGGCAG-TGGGACCG
1 GCATAGGGAGTTCATTCCA-AGTCTAAGCCCCAGACCGGACCGAGGGTTGCGGCAGCT-GGAACG
* * * * ** *
21919177 GCAACACGCAGAGGGGGACTGGGCCGATTGCCGGCTTGCGCATTATGCCTCTCCGGCCGACTCAG
64 ACAGCACGAAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAG
** * * * *
21919242 TTCCTGCACGCTCATTTCATGGGTTGACTTAG
128 CACCCGCACACTCATTTCGTGGGTTGGCTTAG
* * * *** * * ***
21919274 GCTTACGGAGTTCATTCCTAGTCTAATATCC-GATCGGACCGAGGGTTGCAGCAGCTGGGTTGAC
1 GCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGACCGGACCGAGGGTTGCGGCAGCTGGAACGAC
* * * * * * * *
21919338 AGCATGCAGGGGGGACCTGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCAC
66 AGCACGAAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAGCAC
* * *
21919403 CCGCACACTCGTTTCATGGTTTGGCTTAG
131 CCGCACACTCATTTCGTGGGTTGGCTTAG
* *
21919432 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATAGGGAGTTCATTCCAAGTCTAAGC
21919460 ATACGGAGTT
Statistics
Matches: 498, Mismatches: 147, Indels: 36
0.73 0.22 0.05
Matches are distributed among these distances:
158 153 0.31
159 338 0.68
160 7 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGACCGGACCGAGGGTTGCGGCAGCTGGAACGAC
AGCACGAAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAGCAC
CCGCACACTCATTTCGTGGGTTGGCTTAG
Found at i:21919224 original size:318 final size:317
Alignment explanation
Indices: 21918646--21919459 Score: 914
Period size: 318 Copynumber: 2.6 Consensus size: 317
21918636 TAAGCATAAG
* * * * * *
21918646 GAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCTGTAGCAGTATCGATAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGCAGCAGGATAGATAGCACGCA
* * * * * *
21918711 GGGGGGACCGGGCCGATCCCTGACTTGCACATTCTACCTC-TCAGGCCAGCTGAGCAACCGCACG
66 GGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTC-GGCCGGCTGAGCACCCGCACG
*
21918775 CCCGTTTCGTGGGTTGGCTTAGGAATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACCGAG
130 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACCGAG
* ** * *
21918840 GGTTGTGGCAGCTGTAACGGCCGCACGAAGAGGGGGACCAGGCCGATCCCCGACTTGTGTATTAT
195 GGTTGTGGCAGCTGGAACGGCAACACGAAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATTAT
* * * * *
21918905 GCCTCTTCAATCGACTCAGCACCCGCACACTCATTTCGTGGGTTGAATTATGCATGCA
260 GCCTCTCCAACCGACTCAGCACCCGCACACTCATTTCATGGGTTGAATTAGGCATACA
* * *
21918963 GAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGCGGCAGCAGGATAGATAGCACACA
1 GAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGCAGCAGGATAGATAGCACGCA
* * ** * *
21919028 GGAGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGTACG
66 GG-GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCACCCGCACG
* * * ** *
21919093 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCTACA-TCTATGCCCCAGTTGGATCGA
130 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA-AGTCTAAGCCCCAGCCGGACCGA
* * ** ** *
21919157 GGGTTGTGGCAG-TGGGACCGGCAACACGCAGAGGGGGACTGGGCCGATTGCCGGCTTGCGCATT
194 GGGTTGTGGCAGCT-GGAACGGCAACACGAAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATT
** ** * * * * *
21919221 ATGCCTCTCCGGCCGACTCAGTTCCTGCACGCTCATTTCATGGGTTGACTTAGGCTTACG
258 ATGCCTCTCCAACCGACTCAGCACCCGCACACTCATTTCATGGGTTGAATTAGGCATACA
* * ** * * * * * *
21919281 GAGTTCATTCCTAGTCTAATATCCGATCGGACCGAGGGTTGCAGCAGCTGGGTTGACAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGCAGCAGGATAGATAGCACGCA
* * * *
21919346 GGGGGGACCTGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACAC
66 GGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCACCCGCACGC
* * * * *
21919411 TCGTTTCATGGTTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
131 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGC
21919460 ATACGGAGTT
Statistics
Matches: 408, Mismatches: 84, Indels: 10
0.81 0.17 0.02
Matches are distributed among these distances:
317 153 0.38
318 252 0.62
319 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (317 bp):
GAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGCAGCAGGATAGATAGCACGCA
GGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCACCCGCACGC
CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACCGAGG
GTTGTGGCAGCTGGAACGGCAACACGAAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATTATG
CCTCTCCAACCGACTCAGCACCCGCACACTCATTTCATGGGTTGAATTAGGCATACA
Found at i:21919462 original size:26 final size:26
Alignment explanation
Indices: 21919432--21919484 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21919422 TTTGGCTTAG
21919432 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21919458 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21919484 G
1 G
21919485 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21920200 original size:26 final size:26
Alignment explanation
Indices: 21920164--21920216 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21920154 GTTGACTTAG
* *
21920164 GCATACGGAGTTCATCCTCAGTCTAA
1 GCATACAGAGTTCATCCTCAATCTAA
*
21920190 GCATACAGAGTTCATTCTCAATCTAA
1 GCATACAGAGTTCATCCTCAATCTAA
21920216 G
1 G
21920217 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCTCAATCTAA
Found at i:21920519 original size:159 final size:157
Alignment explanation
Indices: 21920330--21920725 Score: 359
Period size: 159 Copynumber: 2.5 Consensus size: 157
21920320 CGCACACCCA
* ** * *
21920330 TTTCATGTGTTGGCTTAGGCATTGGGAGTTCATTCTATGTCTAAGCCCCAACTGGACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCA-TACGAGTTCATTCCATGTCTAAGCCCCAACAGGACCGAGGGTT
** ** *
21920395 ATGGTAGCAGGACCGGCAGCACGTAGAGGAGGACCGAGTCAATCCTTAGCTTGCGCATTATGCCT
65 ATGGTAGCAGGACCAACAGCACGTAGAGGAGGACCGAGTCAATCCCCAGCTTGCACATTATGCCT
*
21920460 C-CCCGACAGGCTCAATG-CCCGCATGCTCG
130 CTCCCGAC-GG-TCAA-GACCCGCACGCTCG
* ** * *
21920489 TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCGAACCA-GACCAAGGG
1 TTTCATGGGTTGGCTTAGGCATAC-GAGTTCATT-CCATGTCTAAGCCCCAA-CAGGACCGAGGG
** * * * * * * * * * * * *
21920552 TTGCGATAGCAAGATCAATAGCACGTAGGGGTGGACTGGGTCGATCCCCGGCTTGTACATTCTGC
63 TTATGGTAGCAGGACCAACAGCACGTAGAGGAGGACCGAGTCAATCCCCAGCTTGCACATTATGC
** * *
21920617 CTCTCTGGTCGGTTAAGCACCCGCACGCTCG
128 CTCTCCCGACGGTCAAG-ACCCGCACGCTCG
* *
21920648 TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCAGGACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACG-AGTTCATTCCATGTCTAAGCCCCAACAGGACCGAGGGTT
21920713 ATGGTAGCAGGAC
65 ATGGTAGCAGGAC
21920726 TGGTAGCGGG
Statistics
Matches: 182, Mismatches: 46, Indels: 18
0.74 0.19 0.07
Matches are distributed among these distances:
157 1 0.01
158 10 0.05
159 165 0.91
160 6 0.03
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (157 bp):
TTTCATGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGCCCCAACAGGACCGAGGGTTA
TGGTAGCAGGACCAACAGCACGTAGAGGAGGACCGAGTCAATCCCCAGCTTGCACATTATGCCTC
TCCCGACGGTCAAGACCCGCACGCTCG
Found at i:21920900 original size:26 final size:26
Alignment explanation
Indices: 21920850--21920902 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21920840 GTTGACTTAG
*
21920850 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
**
21920876 GCATACAGAGTTCATTGCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
21920902 G
1 G
21920903 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:21921186 original size:159 final size:160
Alignment explanation
Indices: 21920916--21921380 Score: 498
Period size: 159 Copynumber: 2.9 Consensus size: 160
21920906 GGACTAGATC
* * * * * * *
21920916 GAGGGTTGAGGCAGCAGGATCGACAGCACGC-AGGGGGGACCAGG-CCGATCTCCGA-CTTACGC
1 GAGGGTTGTGGCAGCAGGATCGATAGCACGCAAGGTGGGATC-GGACCGATC-CCTAGCTTGCAC
* * * * *
21920978 ATTTTACCTCTCTGGTCGGTTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGA
64 ATTATGCCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
*
21921043 GTTCATTCCATGTCTAAGCCCCAG-CCAG-AT
129 GTTCATTCCATGTCTAAGCACCAGACCAGAAT
* * *
21921073 CGAGGGTTGTGGCAGCGGGA-CTGGTAGCACGCAAAGG-GGGATCGGACCGATCCCTGGCTTGCA
1 -GAGGGTTGTGGCAGCAGGATC-GATAGCACGC-AAGGTGGGATCGGACCGATCCCTAGCTTGCA
* * * * * *
21921136 CATTATTCCTCTTTGGTCGGTTCAGCGCCCGCACGCTTGTTTCATGGGTTGGCTTATGCATACAG
63 CATTATGCCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
*
21921201 AGTTCATTCCCA-GTCTAAG-ATCAGACCAGAAT
128 AGTTCATT-CCATGTCTAAGCACCAGACCAGAAT
** * * * * *
21921233 GAGGGTTGTGGTGGCAGGATCGATAGTACGCAGGGTGGGATCGGGCTGATCCCTAGCTTGCGCAT
1 GAGGGTTGTGGCAGCAGGATCGATAGCACGCAAGGTGGGATCGGACCGATCCCTAGCTTGCACAT
* * * * *
21921298 TCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGAAGT
66 TATGCCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
21921363 TCATTCCATGTCTAAGCA
131 TCATTCCATGTCTAAGCA
21921381 TACGGAATTC
Statistics
Matches: 253, Mismatches: 42, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
157 1 0.00
158 38 0.15
159 204 0.81
160 10 0.04
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (160 bp):
GAGGGTTGTGGCAGCAGGATCGATAGCACGCAAGGTGGGATCGGACCGATCCCTAGCTTGCACAT
TATGCCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCACCAGACCAGAAT
Found at i:21921391 original size:26 final size:26
Alignment explanation
Indices: 21921352--21921404 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
21921342 GTTAGCTTAG
21921352 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
21921378 GCATACGGAA-TTCATTCCCAGTCTAA
1 GCATAC-GAAGTTCATTCCCAGTCTAA
21921404 G
1 G
21921405 ATCTTATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21922050 original size:158 final size:159
Alignment explanation
Indices: 21921755--21922061 Score: 366
Period size: 158 Copynumber: 1.9 Consensus size: 159
21921745 CCCCAGCTGG
* * * * *
21921755 ATCGAGGGTTGTGGTAACGGGATCGACAGCACGCAGAGGGGGATCAGGCCGATCCCCGGCTTACG
1 ATCGAGGGTTGCGGTAACAGGATCAACAGCACGCAGAGGGGGATCAGGCCGATCCCCGACTTACA
* * ** * * *
21921820 CATTATGCCTCTACGGCCGGCTTAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACAG
66 CATTATGCCTCTACCGCCGGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAG
21921885 AGTTCATTCCCA-GTCTAAGATTGGACCAA
131 AGTTCATT-CCATGTCTAAGATTGGACCAA
** * * * **
21921914 ATCGAGGGTTGCGGTAGTAGGATCAACAGCACGCAGGGGGGGA-CCGGTCGATCCCCGACTTGTA
1 ATCGAGGGTTGCGGTAACAGGATCAACAGCACGCAGAGGGGGATCAGGCCGATCCCCGACTTACA
* * * * * *
21921978 CATTCTGCCTCTCCCGCTGGCTGAGCACCCACACGCTCATTTTGTGGGTTGGCTTAGGCATACGG
66 CATTATGCCTCTACCGCCGGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAG
21922043 AGTTCATTCCATGTCTAAG
131 AGTTCATTCCATGTCTAAG
21922062 CATACGGAGT
Statistics
Matches: 122, Mismatches: 25, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
157 3 0.02
158 82 0.67
159 37 0.30
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
ATCGAGGGTTGCGGTAACAGGATCAACAGCACGCAGAGGGGGATCAGGCCGATCCCCGACTTACA
CATTATGCCTCTACCGCCGGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAG
AGTTCATTCCATGTCTAAGATTGGACCAA
Found at i:21922071 original size:26 final size:26
Alignment explanation
Indices: 21922035--21922087 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21922025 GTTGGCTTAG
21922035 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
21922061 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
21922087 G
1 G
21922088 ATTTTGAGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:21922797 original size:26 final size:26
Alignment explanation
Indices: 21922767--21922819 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21922757 GTTGACTTAG
21922767 GCATACGGAGTTCATCTCC-AGTCTAA
1 GCATACGGAGTTCAT-TCCTAGTCTAA
21922793 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
21922819 G
1 G
21922820 ATCAGACTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:21923174 original size:159 final size:155
Alignment explanation
Indices: 21922792--21923293 Score: 503
Period size: 159 Copynumber: 3.2 Consensus size: 155
21922782 CTCCAGTCTA
* * *
21922792 AGCATACGGAGTTCATTCC-TAGTCTAAGATCAGACTGAACCGAGGGTTGGGGTAGCAGGATCGA
1 AGCATACGGAGTTCATTCCAT-GTCTAAGATCAGACAG-A-CGAGGGTTGTGATAGCAGGATCGA
* * * * *
21922856 CAGCATGCAG-GGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTGAGC
63 CAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG-CTGCTGAGC
* * * *
21922920 GCGCGCACGCCCATTTCGTGGGTTGGCTT
127 GCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * ** * * *
21922949 AGCATAGGGAGGTCATTCTATGTCTAAGCCCCAGCCGGACTGAGGGTTATGATAGC-GAGA-CTG
1 AGCATACGGAGTTCATTCCATGTCTAAG-ATCAGACAGAC-GAGGGTTGTGATAGCAG-GATC-G
* * ** * * *
21923012 ACAGTACGCAGAGGGGCACCGGGTCGATCCCCGATTTGCGCATTATGCCTCTCCGGTTGTCTCAG
62 ACAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTG-CTGAG
* *
21923077 CGCCCGTACGCTCGTTTCATGGGTTGACTT
126 CGCCCGCACGCTCGTTTCGTGGGTTGACTT
*
21923107 ACGCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCAGATCAAGGGTTGTGATAGCAGGATCG
1 A-GCATACGGAGTTCATT-CCATGTCTAAGATCAGA-CAGA-CGAGGGTTGTGATAGCAGGATCG
* * * * * *
21923171 ACAGCACGCAAAGGGGGACCGGGTTGATCCCCGGCTTGCGTATTCTACCACTCCGACTGGCTGAG
62 ACAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCT-GCTGAG
21923236 CGCCCGCACGCTCGTTTCGTGGG-TGACTT
126 CGCCCGCACGCTCGTTTCGTGGGTTGACTT
21923265 AGGCATACGGAGTTCATTCCATGTCTAAG
1 A-GCATACGGAGTTCATTCCATGTCTAAG
21923294 CATACAGAGT
Statistics
Matches: 277, Mismatches: 53, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
156 3 0.01
157 52 0.19
158 105 0.38
159 111 0.40
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (155 bp):
AGCATACGGAGTTCATTCCATGTCTAAGATCAGACAGACGAGGGTTGTGATAGCAGGATCGACAG
CACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTT
Found at i:21923303 original size:26 final size:26
Alignment explanation
Indices: 21923267--21923319 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21923257 GGTGACTTAG
*
21923267 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
21923293 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21923319 G
1 G
21923320 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21923452 original size:184 final size:183
Alignment explanation
Indices: 21923109--21923478 Score: 478
Period size: 184 Copynumber: 2.0 Consensus size: 183
21923099 GTTGACTTAC
* * * * * *
21923109 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCAAGGGTTGTGATAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGAGACAGCAGGACCGACA
** *
21923174 GCACGCAAAGGGGGACCGGGTTGATCCCCGGCTTGCGTATTCTACCACTCCGACTGGCTGAGCGC
66 GCACGCAAAGGGGGACCGGGCCGATCCCCGGCTTGCG-ATTCTACCACTCCGACCGGCTGAGCGC
* *
21923239 CCGCACGCTCGTTTCGTGGGTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CCGCACGCCCATTTCGTGGGTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
21923293 GCATACAGAGTTTATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAG-CAGCAGGACC-AG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTG-AGACAGCAGGACCGA-
* * * * *
21923356 CAGCACGC-AGGGGGGATCGGGCCGATCCCTGGCTTTTGCG-TTCTGCCTCTCCGACCGGCTGAG
64 CAGCACGCAAAGGGGGACCGGGCCGATCCCCGGC--TTGCGATTCTACCACTCCGACCGGCTGAG
* *
21923419 CGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
127 CGCCCGCACGCCCATTTCGTGGG-TGACTTAGGCATACGGAGTTCATTCCATGTCTAA
21923477 GC
1 GC
21923479 CCTAGTCGGA
Statistics
Matches: 161, Mismatches: 20, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
183 62 0.39
184 93 0.58
185 6 0.04
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (183 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGAGACAGCAGGACCGACA
GCACGCAAAGGGGGACCGGGCCGATCCCCGGCTTGCGATTCTACCACTCCGACCGGCTGAGCGCC
CGCACGCCCATTTCGTGGGTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:21923613 original size:158 final size:157
Alignment explanation
Indices: 21923293--21923667 Score: 409
Period size: 158 Copynumber: 2.4 Consensus size: 157
21923283 CCATGTCTAA
* * ** * * * *
21923293 GCATACAGAGTTTATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGCCCAGATCGGACCGAGGGTTGCGGTAGCAGGACCAGCA
* * * * * * *
21923358 GCACGCAGGGGGGATCGGGCCGATCCCTGGCTTTTGCGTTCTGCCTCTCCGACCGGCTGAGCGCC
66 GCACGCAGGGGGGACCAGGCCGATCCCCGAC-TTTGCGTTATGCCTCTCCGACCAGCTCAGCGCC
* *
21923423 CGCACGCCCATTTCGTGGGTTGGCTTAG
130 CGCACGCCCATTTCATGGGTTGACTTAG
* * *
21923451 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-TCGGACCGAGGGTTGTGGTAGCGGGACCAG
1 GCATACGGAGTTCATTCCCA-GTCTAAGCCC-AGATCGGACCGAGGGTTGCGGTAGCAGGACCAG
* * *
21923514 CAGCACGTAGAGGGGGACCAGGTCGATCCCCGAC-TTGCGTATTATGCCTCTCCGATCAGCTCAG
64 CAGCACGCAG-GGGGGACCAGGCCGATCCCCGACTTTGCG--TTATGCCTCTCCGACCAGCTCAG
*
21923578 TGCCCGCACGCTCC-TTTCATGGGTTGACTTA-
126 CGCCCGCACGC-CCATTTCATGGGTTGACTTAG
* * *
21923609 GCATACGGAGTTCATTCCCAGTCTAAGCTCGGATTGGACCGAGGGTTGCGGTAGCAGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCCCAGATCGGACCGAGGGTTGCGGTAGCAGGA
21923668 TCAACACCCC
Statistics
Matches: 179, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
157 9 0.05
158 101 0.56
159 67 0.37
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCCCAGATCGGACCGAGGGTTGCGGTAGCAGGACCAGCA
GCACGCAGGGGGGACCAGGCCGATCCCCGACTTTGCGTTATGCCTCTCCGACCAGCTCAGCGCCC
GCACGCCCATTTCATGGGTTGACTTAG
Found at i:21923656 original size:500 final size:501
Alignment explanation
Indices: 21922730--21923669 Score: 1336
Period size: 500 Copynumber: 1.9 Consensus size: 501
21922720 CTCTGGTCGA
*
21922730 CTGAGCGCCCGCACGCTCTTTTCATGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGC
* * * ** * *
21922795 ATACGGAGTTCATTCCTAGTCTAAGATCAGACTGAACCGAGGGTTGGGGTAGCAGGATCGACAGC
66 ATACAGAGTTCATTCCCAGTCTAAGATCAGACAGAACCGAGGGTTGCAGCAGCAGGACCGACAGC
* * * *
21922860 ATGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTGAGCGCGCG
131 ACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCCG
* *
21922925 CACGCCCATTTCGTGGGTTGGCTTAGCATAGGGAGGTCATTCTATGTCTAAGCCCCAGCCGGACT
196 CACGCCCATTTCGTGGGTTGGCTTAGCATAGGGAGGTCATTCCATGTCTAAGCCCCAGCCGGACC
* * * *
21922990 GAGGGTTATGATAGCGAGACTGACAGTACGCAGAGGGGCACCGGGTCGATCCCCGATTTGCGCAT
261 GAGGGTTATGATAGCGAGACAGACAGCACGCAGAGGGGCACCAGGTCGATCCCCGACTTGCGCAT
* * * *
21923055 TATGCCTCTCCGGTTGTCTCAGCGCCCGTACGCTCGTTTCATGGGTTGACTTACGCATACGGAGT
326 TATGCCTCTCCGATAGTCTCAGCGCCCGCACGCTCCTTTCATGGGTTGACTTACGCATACGGAGT
* *
21923120 TCATTCCCAGTCTAAGATCAGATCAGATCAAGGGTTGTGATAGCAGGATCGACAGCACGCAAAGG
391 TCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGATAGCAGGATCGACAGCACGCAAAGG
21923185 GGGACCGGGTTGATCCCCGGCTTGCGTATTCTACCACTCCGACTGG
456 GGGACCGGGTTGATCCCCGGCTTGCGTATTCTACCACTCCGACTGG
*
21923231 CTGAGCGCCCGCACGCTCGTTTCGTGGG-TGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAG
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCTCCA-GTCTAAG
*
21923294 CATACAGAGTTTATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCAGCAGCAGGACC-AGC
65 CATACAGAGTTCATTCCCAGTCTAAGATCAGA-CAGAACCGAGGGTTGCAGCAGCAGGACCGA-C
* * * ** * *
21923357 AGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTTTGCGTTCTGCCTCTCCGACCGGCTGAGCGC
128 AGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGC
* * *
21923422 CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCG
193 CCGCACGCCCATTTCGTGGGTTGGCTTA-GCATAGGGAGGTCATTCCATGTCTAAGCCCCAGCCG
* * * * *
21923487 GACCGAGGGTTGTGGTAGCGGGACCAG-CAGCACGTAGAGGGGGACCAGGTCGATCCCCGACTTG
257 GACCGAGGGTTATGATAGCGAGA-CAGACAGCACGCAGAGGGGCACCAGGTCGATCCCCGACTTG
* *
21923551 CGTATTATGCCTCTCCGATCAG-CTCAGTGCCCGCACGCTCCTTTCATGGGTTGACTTA-GCATA
321 CGCATTATGCCTCTCCGAT-AGTCTCAGCGCCCGCACGCTCCTTTCATGGGTTGACTTACGCATA
* * ** * *
21923614 CGGAGTTCATTCCCAGTCTAAGCTCGGATTGGACCGAGGGTTGCGGTAGCAGGATC
385 CGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGATAGCAGGATC
21923670 AACACCCCCT
Statistics
Matches: 384, Mismatches: 49, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
499 5 0.01
500 215 0.56
501 161 0.42
502 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (501 bp):
CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGC
ATACAGAGTTCATTCCCAGTCTAAGATCAGACAGAACCGAGGGTTGCAGCAGCAGGACCGACAGC
ACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCCG
CACGCCCATTTCGTGGGTTGGCTTAGCATAGGGAGGTCATTCCATGTCTAAGCCCCAGCCGGACC
GAGGGTTATGATAGCGAGACAGACAGCACGCAGAGGGGCACCAGGTCGATCCCCGACTTGCGCAT
TATGCCTCTCCGATAGTCTCAGCGCCCGCACGCTCCTTTCATGGGTTGACTTACGCATACGGAGT
TCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGATAGCAGGATCGACAGCACGCAAAGG
GGGACCGGGTTGATCCCCGGCTTGCGTATTCTACCACTCCGACTGG
Found at i:21924011 original size:26 final size:26
Alignment explanation
Indices: 21923981--21924033 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21923971 GTTGACTTAG
21923981 GCATACGGAGTTCATCTCC-AGTCTAA
1 GCATACGGAGTTCAT-TCCTAGTCTAA
21924007 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
21924033 G
1 G
21924034 ATCAGACTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:21924315 original size:159 final size:160
Alignment explanation
Indices: 21924007--21924510 Score: 445
Period size: 159 Copynumber: 3.2 Consensus size: 160
21923997 TCCAGTCTAA
* * * ** *
21924007 GCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGA-CTGAACCGAGGGTTGGGGTAGCAGGATCG
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAG-ACTGAGGGTTATGATAGCAGGATCG
* * * * * * * * * * * ** *
21924069 ACAGCATGC-AGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTGAG
64 ACAGCACGCAAAGGAGGACCGGGTCGATCCCCGACTTGCGCATTATACCACTCCGACTGGCTCAG
* * * *
21924133 CGCGCGCACGCCCATTTCGTGGGTTGGCTTAG
129 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
21924165 GCATAGGGAGGTCATTCTATGTCTAAGCCCCA-ACCGGACTGAGGGTTATGATAGC-GAGA-CTG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGGTTATGATAGCAG-GATC-G
* * * * * * * *
21924227 ACAGTACGCAGAGG-GGCATCGGGTCGATCCCCGATTTGCGCATTATGCCTCTCCGATTGTCTCA
64 ACAGCACGCAAAGGAGG-ACCGGGTCGATCCCCGACTTGCGCATTATACCACTCCGACTGGCTCA
* *
21924291 GCGCCCGTACGCTCGTTTCATGGGTTGACTTAG
128 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
21924324 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGATTGAGGGTTGTGATAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACTGAGGGTTATGATAGCAGGATCGA
* * * * *
21924387 CAGCACGCAAAGGAGGACCGGGTTGATCCCCGGCTTGCGTATTCTACCACTCCGACTGGCTGAGC
65 CAGCACGCAAAGGAGGACCGGGTCGATCCCCGACTTGCGCATTATACCACTCCGACTGGCTCAGC
21924452 GCCCGCACGCTCGTTTCGTGGG-TGACTTAG
130 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
21924482 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
21924511 TACAGAGTTT
Statistics
Matches: 275, Mismatches: 57, Indels: 27
0.77 0.16 0.08
Matches are distributed among these distances:
157 5 0.02
158 82 0.30
159 182 0.66
160 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGGTTATGATAGCAGGATCGAC
AGCACGCAAAGGAGGACCGGGTCGATCCCCGACTTGCGCATTATACCACTCCGACTGGCTCAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:21924518 original size:26 final size:26
Alignment explanation
Indices: 21924482--21924534 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21924472 GGTGACTTAG
*
21924482 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
21924508 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21924534 G
1 G
21924535 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21924667 original size:184 final size:184
Alignment explanation
Indices: 21924324--21924693 Score: 467
Period size: 184 Copynumber: 2.0 Consensus size: 184
21924314 GTTGACTTAG
* * ** * * *
21924324 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATTGAGGGTTGTGATAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGACAGCAGGACCGACA
** * * *
21924389 GCACGCAAAGGAGGACCGGGTTGATCCCCGGCTTGCGTATTCTACCACTCCGACTGGCTGAGCGC
66 GCACGCAAAGGAGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCACTCCGACCGACTGAGCGC
* *
21924454 CCGCACGCTCGTTTCGTGGGTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CCGCACGCCCATTTCGTGGGTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
*
21924508 GCATACAGAGTTTATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAG-CAGCAGGACC-AG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG-AGACAGCAGGACCGA-
* * * * ** * *
21924571 CAGCACGC-AGGGGGGATCGGGCCGATCCCTGGCTTTTGCATTCTGCCTCTCCGACCGACTGAGC
64 CAGCACGCAAAGGAGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCACTCCGACCGACTGAGC
* *
21924635 GCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
129 GCCCGCACGCCCATTTCGTGGG-TGACTTAGGCATACGGAGTTCATTCCATGTCTAA
21924692 GC
1 GC
21924694 CCTAGTCGGA
Statistics
Matches: 158, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
183 64 0.41
184 93 0.59
185 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGACAGCAGGACCGACA
GCACGCAAAGGAGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCACTCCGACCGACTGAGCGC
CCGCACGCCCATTTCGTGGGTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:21925373 original size:26 final size:26
Alignment explanation
Indices: 21925344--21925396 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21925334 GTTTCATGGG
*
21925344 GCATATGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
21925370 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21925396 G
1 G
21925397 ATCGGATTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21925587 original size:171 final size:176
Alignment explanation
Indices: 21925410--21925757 Score: 381
Period size: 184 Copynumber: 2.0 Consensus size: 176
21925400 GGATTGAACT
21925410 GAGGGTTACGGCA-CCAGGACCGATAGCAAGATCAATAGCACGCAG-GGAGGGACCGGG-TCGAT
1 GAGGGTTACGGCAGCCA-GACCGATAGCAAGATCAATAGCACGCAGAGG-GGGACCGGGCT-GAT
*
21925472 CCCCGGCTTGCGCATTCTG-C-CT-T-TC-CGACCGGCTGAGCGCC-CACACGCTCATTTCGTGG
63 CCCCGGCTTGCGCATTATGCCTCTATCTCTCGACCGGCTGAGC-CCTCACACGCTCATTTCGTGG
21925531 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACC
127 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACC
** * * * ** * * *
21925581 GAGGGTTGTGGTAGCCAGATCGGTAGCGGGATCGATAGCATGTAGAGGGGGACCGGGCTGATCCC
1 GAGGGTTACGGCAGCCAGACCGATAGCAAGATCAATAGCACGCAGAGGGGGACCGGGCTGATCCC
* * * *
21925646 CGGCTTGCGTATTATGCCTCTCTGATCGGCCTCTTCGACCGGCTGAGCCCTCGCATGCTCGTTTC
66 CGGCTTGCGCATTATG-C-CTCT-AT----CTC-TCGACCGGCTGAGCCCTCACACGCTCATTTC
*
21925711 GTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCCCCAG
123 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
21925758 TCAGATCGAG
Statistics
Matches: 144, Mismatches: 16, Indels: 21
0.80 0.09 0.12
Matches are distributed among these distances:
171 60 0.42
172 6 0.04
174 1 0.01
175 2 0.01
177 1 0.01
182 2 0.01
183 2 0.01
184 70 0.49
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (176 bp):
GAGGGTTACGGCAGCCAGACCGATAGCAAGATCAATAGCACGCAGAGGGGGACCGGGCTGATCCC
CGGCTTGCGCATTATGCCTCTATCTCTCGACCGGCTGAGCCCTCACACGCTCATTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACC
Found at i:21925806 original size:21 final size:21
Alignment explanation
Indices: 21925759--21925806 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 21
21925749 AAGCCCCAGT
* *
21925759 CAGATCGAGGGCTGTGGCAAT
1 CAGACCGAGGGCTGTGGCAAC
* * *
21925780 CGGACCGAGGGTTGTGGCAGC
1 CAGACCGAGGGCTGTGGCAAC
21925801 CAGACC
1 CAGACC
21925807 AGTAGCGGGA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.21, C:0.25, G:0.40, T:0.15
Consensus pattern (21 bp):
CAGACCGAGGGCTGTGGCAAC
Found at i:21925931 original size:205 final size:205
Alignment explanation
Indices: 21925578--21925974 Score: 548
Period size: 205 Copynumber: 1.9 Consensus size: 205
21925568 CCCCAGCCAA
* * * * **
21925578 ACCGAGGGTTGTGGTAGCCAGATCGGTAGCGGGATCGATAGCATGTAGAGGGGGACCGGGCTGAT
1 ACCGAGGGTTGTGGCAGCCAGACCAGTAGCGGGATCGACAGCATACAGAGGGGGACCGGGCTGAT
* * * * * * *
21925643 CCCCGGCTTGCGTATTATGCCTCTCTGATCGGCCTCTTCGACCGGCTGAGCCCTCGCATGCTCGT
66 CCCAGGCTTGCGCATTATGCCTCTCCGACCGGCCTCTCCGACCGGCTGAGCCCCCGCACGCTCGT
* * * *
21925708 TTCGTGGGTTGGCTTAGGCATACGGAGTTTATT-CCATGTCTAAGCCCCAG-TCAGATCGAGGGC
131 TTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ACCAGATCAGATCGAGGGC
21925771 TGTGGCAATCGG
194 TGTGGCAATCGG
21925783 ACCGAGGGTTGTGGCAGCCAGACCAGTAGCGGGATCGACAGCATACAGAGGGGGACCGGGCTGAT
1 ACCGAGGGTTGTGGCAGCCAGACCAGTAGCGGGATCGACAGCATACAGAGGGGGACCGGGCTGAT
* * *
21925848 CCTCAGG-TTGCGCATTATGCCTCTCCGGCCGGCCTCTCCGACTGGCTGAGCCCCCGTACGCTCG
66 CC-CAGGCTTGCGCATTATGCCTCTCCGACCGGCCTCTCCGACCGGCTGAGCCCCCGCACGCTCG
* *
21925912 TTTCGTGGGTTGACTTAGGCATGCGAAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGG
130 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGACCAGATCAGATCGAGGG
21925975 TTAAGACAGC
Statistics
Matches: 167, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
204 3 0.02
205 158 0.95
206 6 0.04
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (205 bp):
ACCGAGGGTTGTGGCAGCCAGACCAGTAGCGGGATCGACAGCATACAGAGGGGGACCGGGCTGAT
CCCAGGCTTGCGCATTATGCCTCTCCGACCGGCCTCTCCGACCGGCTGAGCCCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGACCAGATCAGATCGAGGGCTG
TGGCAATCGG
Found at i:21928951 original size:26 final size:26
Alignment explanation
Indices: 21928921--21928973 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21928911 GTTGGCTTTG
*
21928921 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCTCA-GTCTAA
21928947 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
21928973 G
1 G
21928974 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:21929325 original size:26 final size:26
Alignment explanation
Indices: 21929289--21929341 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21929279 GTTGACTTAG
*
21929289 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21929315 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21929341 G
1 G
21929342 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21929780 original size:158 final size:156
Alignment explanation
Indices: 21929314--21929821 Score: 477
Period size: 159 Copynumber: 3.2 Consensus size: 156
21929304 CCCCAGTCTA
** * * *
21929314 AGCATACGGAGTTCATTCCCTGTCTAAGATTGGACCGGACCGGACCAGAGGTTGCGGCAGTAGGA
1 AGCATACGGAGTTCATTCCAAGTCTAAGATCGAACCGGACC-G---AG-GGTTGCGGCAGCAGGA
* * * * * * *
21929379 TCGGCAGCACGCAGGGGGGACTGGGTCGATCCCCGGCTTGCGTATTCTGCCTC-TCTGGCCGGCT
61 TCGACAGCACGTAGGGGGGACTGGGCCAAT-CCCGGCTTGCGCATTATGCCTCTTC-GGCCAGCT
* * * * *
21929443 GAGCGCCCGTACGCCCCTTTTGTGGGTTGGCTT
124 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* ** * * *
21929476 AGGCATAGGGAGTTCATT-CAATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGC-GAGA-C
1 A-GCATACGGAGTTCATTCCAA-GTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAG-GATC
* * *
21929538 TGATAGCACGTTGAGGGGGA-TCGGGCCCATCTCCGGCTTGCGCATTATGCCTCTTCGGCCAGCT
63 -GACAGCACGTAG-GGGGGACT-GGGCCAATC-CCGGCTTGCGCATTATGCCTCTTCGGCCAGCT
* *
21929602 CAGCGCCCACACGCTCGTTTCGTGGGTTGACTT
124 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * *
21929635 ATGCATACGGAGTTCATTCCAAGTCTAAGATCGAATCGGACCGAGGGTTACAGCAGCAGGATCGA
1 A-GCATACGGAGTTCATTCCAAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * *
21929700 CAGCACATAGGGGGGACTGGGCCAATCCCTGGCTTGCACATTTTGCCTCTTCGGCCAGCTGAGCG
65 CAGCACGTAGGGGGGACTGGGCCAATCCC-GGCTTGCGCATTATGCCTCTTCGGCCAGCTGAGCG
* **
21929765 CCCGCACGCTCGTTTCATGGGTTTTCTT
129 CCCGCACGCTCGTTTCGTGGGTTGACTT
* *
21929793 AGCGATACGAAGTTCATTCCATGTCTAAG
1 AGC-ATACGGAGTTCATTCCAAGTCTAAG
21929822 CATACGGAGT
Statistics
Matches: 282, Mismatches: 50, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
157 6 0.02
158 116 0.41
159 121 0.43
160 7 0.02
162 3 0.01
163 29 0.10
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (156 bp):
AGCATACGGAGTTCATTCCAAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
AGCACGTAGGGGGGACTGGGCCAATCCCGGCTTGCGCATTATGCCTCTTCGGCCAGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTT
Found at i:21929827 original size:26 final size:26
Alignment explanation
Indices: 21929797--21929852 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
21929787 TTTCTTAGCG
21929797 ATACGAAGTTCATTCCATGTCTAAGC
1 ATACGAAGTTCATTCCATGTCTAAGC
* *
21929823 ATACGGAGTTCATTGCATGTCTAAGC
1 ATACGAAGTTCATTCCATGTCTAAGC
21929849 ATAC
1 ATAC
21929853 AGAGTTCTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
ATACGAAGTTCATTCCATGTCTAAGC
Found at i:21929857 original size:26 final size:26
Alignment explanation
Indices: 21929803--21929864 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
21929793 AGCGATACGA
*
21929803 AGTTCATTCCATGTCTAAGCATACGG
1 AGTTCATTCCATGTCTAAGCATACAG
*
21929829 AGTTCATTGCATGTCTAAGCATACAG
1 AGTTCATTCCATGTCTAAGCATACAG
*
21929855 AGTTCTTTCC
1 AGTTCATTCC
21929865 CAATCTAAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.34
Consensus pattern (26 bp):
AGTTCATTCCATGTCTAAGCATACAG
Found at i:21929871 original size:26 final size:26
Alignment explanation
Indices: 21929803--21929873 Score: 81
Period size: 26 Copynumber: 2.7 Consensus size: 26
21929793 AGCGATACGA
* *
21929803 AGTTCATTCCATGTCTAAGCATACGG
1 AGTTCATTCCATATCTAAGCATACAG
* *
21929829 AGTTCATTGCATGTCTAAGCATACAG
1 AGTTCATTCCATATCTAAGCATACAG
*
21929855 AGTTCTTTCCCA-ATCTAAG
1 AGTTCATT-CCATATCTAAG
21929874 ATTTTGAGCC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 37 0.95
27 2 0.05
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
AGTTCATTCCATATCTAAGCATACAG
Found at i:21930819 original size:26 final size:26
Alignment explanation
Indices: 21930789--21930841 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21930779 GTTGACTTAG
21930789 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21930815 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21930841 G
1 G
21930842 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21931383 original size:26 final size:26
Alignment explanation
Indices: 21931353--21931405 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21931343 GTTGACTTAG
21931353 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
21931379 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21931405 G
1 G
21931406 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21931888 original size:26 final size:26
Alignment explanation
Indices: 21931852--21931904 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21931842 GTTGGCTTAG
21931852 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21931878 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21931904 G
1 G
21931905 ATCAGACCGT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21932271 original size:26 final size:26
Alignment explanation
Indices: 21932217--21932272 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
21932207 TGGGTTGACT
**
21932217 TAAGCATATGGAGTTCATCCCCAGTC
1 TAAGCATATGGAGTTCATCCCCAACC
* *
21932243 TAAGCATATGGTGTTCATTCCCAACC
1 TAAGCATATGGAGTTCATCCCCAACC
21932269 TAAG
1 TAAG
21932273 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATATGGAGTTCATCCCCAACC
Found at i:21932784 original size:26 final size:26
Alignment explanation
Indices: 21932748--21932799 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21932738 TTGGCTTAGA
21932748 CATACGAAGTTCATT-CCATGTCTAAG
1 CATACGAAGTTCATTCCCA-GTCTAAG
*
21932774 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
21932800 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:21939421 original size:26 final size:26
Alignment explanation
Indices: 21939392--21939444 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21939382 GTTGACTTAG
*
21939392 GCATACAAAGTTTATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
21939418 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
21939444 G
1 G
21939445 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:21939924 original size:26 final size:26
Alignment explanation
Indices: 21939894--21939946 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
21939884 GTTGGCTTTG
21939894 GCATAC-GAAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
*
21939920 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21939946 G
1 G
21939947 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21940121 original size:26 final size:26
Alignment explanation
Indices: 21940091--21940143 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21940081 GTTGACTTAG
* *
21940091 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTGCATCCCCAGTCTAA
*
21940117 GCATACGAAGTGCATTCCCAGTCTAA
1 GCATACGAAGTGCATCCCCAGTCTAA
21940143 G
1 G
21940144 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTGCATCCCCAGTCTAA
Found at i:21940136 original size:197 final size:197
Alignment explanation
Indices: 21939799--21940302 Score: 534
Period size: 197 Copynumber: 2.6 Consensus size: 197
21939789 CAGGATTGAC
* * * * * * *
21939799 AGCACGCAGGGGGGGATGGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCTGCTGAGTG
1 AGCACGCAGGGCGGAATGGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCG
* * *
21939864 CCCACACGCTCGTTTCATGGGTTGGCTTTGGCATACGAAGTTCATTCCATGTCTAAGCATACAGA
66 CCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAAGCATACAGA
** *
21939929 GTTTATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGACAGTAGGACTAGCAGTAGGATCG
131 GTGCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGTAGGACTAGCAGTAGGATCG
21939994 GT
196 GT
* * * *
21939996 AGCACGCAGGGCGGAATTGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGATCGGTTGAGCG
1 AGCACGCAGGGCGGAATGGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCG
* *
21940061 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATAC-G
66 CCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCAT-CCCATGTCTAAGCATACAG
**
21940124 AAGTGCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTT--G-C--T--G-C-AGCAG-A--AT
130 -AGTGCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGTAGGACTAGCAGTAGGAT
*
21940177 CGAT
194 CGGT
* * * * * * * * * *
21940181 AGCACGCA-AGTGGTATCGGGCTGATCCCCGACTTGCGTATTCTGCCTCTCCGGTCGGCTGAGCA
1 AGCACGCAGGGCGGAATGGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCG
* * * * * * *
21940245 CCCGCACGCCCATTTCATGGGTTGTCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
66 CCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAAGC
21940303 CCCAGTCAGA
Statistics
Matches: 264, Mismatches: 40, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
183 3 0.01
184 92 0.35
185 13 0.05
187 1 0.00
188 5 0.02
189 1 0.00
190 1 0.00
192 1 0.00
194 1 0.00
195 1 0.00
196 1 0.00
197 141 0.53
198 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (197 bp):
AGCACGCAGGGCGGAATGGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCG
CCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAAGCATACAGA
GTGCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGTAGGACTAGCAGTAGGATCG
GT
Found at i:21940620 original size:26 final size:26
Alignment explanation
Indices: 21940591--21940643 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21940581 GTTGGCTTAG
21940591 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21940617 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21940643 G
1 G
21940644 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21941353 original size:158 final size:159
Alignment explanation
Indices: 21940967--21941386 Score: 465
Period size: 159 Copynumber: 2.6 Consensus size: 159
21940957 GATCTTCAAA
* * * *
21940967 GGCCGATCCCTGGCTTGCGCATTTTGCCTCTCCGATCGGCTGAGTGCCTGCAGGCCCGTTTCGTG
1 GGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGTGCCCGCAGGCTCGTTTCGTG
* * * * *
21941032 GGTT-AGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAACCGGACCGAGGGTTGTGGCA
66 GGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAACCAGACCGAGGGTTGCGACA
* * ***
21941096 GCGAGACCGGCAGCATGTAGAGGGGGACCG
130 GAGAGACCGACAGCACACAGAGGGGGACCG
* * * * * *
21941126 GGCCGATCCCCAGCTTGCGCATTATGCCTCTCC-AGCCAGCTCAGTGCCCGCATGCTCATTTCGT
1 GGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGA-TCGGCTGAGTGCCCGCAGGCTCGTTTCGT
* *
21941190 GGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATC-AGATCAGACCGAGGGTTGCGA
65 GGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCTA-ACCAGACCGAGGGTTGCGA
* *
21941253 CAGTAG-GATCGACAGCACACAG-GGGGGATCG
128 CAG-AGAGACCGACAGCACACAGAGGGGGACCG
* * * * ***
21941284 GGCTGATCTCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAACACCCGCAGGCTCGTTTCGTG
1 GGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGTGCCCGCAGGCTCGTTTCGTG
*
21941349 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 GGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
21941387 CAAACGGAGT
Statistics
Matches: 216, Mismatches: 38, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
157 3 0.01
158 93 0.43
159 115 0.53
160 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
GGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGTGCCCGCAGGCTCGTTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAACCAGACCGAGGGTTGCGACAG
AGAGACCGACAGCACACAGAGGGGGACCG
Found at i:21942117 original size:159 final size:158
Alignment explanation
Indices: 21941847--21942257 Score: 407
Period size: 159 Copynumber: 2.6 Consensus size: 158
21941837 GGCCGACCTT
* * * ** * * ** *
21941847 CAGCTTACGCATTCTGCCTCTCCGGCCTGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTC
1 CAGCTTGCACATTATGCCTCTCCCACCAGCTAAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTA
* * * * *
21941912 GGCATAGGGAGTTCATTCCATGTCTACGCCCCAGTCGGACCGAGGGTTGTGGCAACTAGACCGCC
66 GGCATACGGAGTTCATTCCATGTCTAAGCCCCACTCGGACCGAGGGTTGTGGCAACGAGACCGAC
*
21941977 AGCATGCAAAGG-GGGATCGAGCTGATCCC
131 AGAATGC--AGGAGGGATCGAGCTGATCCC
* * * * * * * *
21942006 CGGCTTGCGCATTATGCGTTTCCCATCAGCTAAGTGCCCGCACGCTTGTTTTGTGGGTTGACTTA
1 CAGCTTGCACATTATGCCTCTCCCACCAGCTAAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTA
* ** * * *
21942071 GGCATACGGAGTTCATTCCCA-GTCTAAGATCGGACT-GGACCGAGGGTTGTGGTAGCGAGATCG
66 GGCATACGGAGTTCATT-CCATGTCTAAG-CCCCACTCGGACCGAGGGTTGTGGCAACGAGACCG
*
21942134 ACAGAATGCAGGAGGGATCGGGCTGATCCC
129 ACAGAATGCAGGAGGGATCGAGCTGATCCC
* ** * * *
21942164 CAGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCT-TTTCATGGGTTGGCTT
1 CAGCTTGCACATTATGCCTCTCCCACCAGCTAAGCGCCCGCACGCT-TGTTTCGTGGGTTGGCTT
*
21942228 AGGCATACGAAGTTCATTCCATGTCTAAGC
65 AGGCATACGGAGTTCATTCCATGTCTAAGC
21942258 ATACTGAACT
Statistics
Matches: 202, Mismatches: 45, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
157 6 0.03
158 88 0.44
159 102 0.50
160 6 0.03
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (158 bp):
CAGCTTGCACATTATGCCTCTCCCACCAGCTAAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTA
GGCATACGGAGTTCATTCCATGTCTAAGCCCCACTCGGACCGAGGGTTGTGGCAACGAGACCGAC
AGAATGCAGGAGGGATCGAGCTGATCCC
Found at i:21942229 original size:158 final size:157
Alignment explanation
Indices: 21941753--21942256 Score: 446
Period size: 158 Copynumber: 3.2 Consensus size: 157
21941743 ATCCATAGTC
* ** * **
21941753 TAGGCATACGGAGTTCATTCCCA-ATC-ATA-ATCGAACCAGATCGAGGGTTACGGTAGCGAGAT
1 TAGGCATACGGAGTTCATT-CCATGTCTA-AGATCGAACTGGACCGAGGGTTGTGGTAGCGAGAT
* ** * * * * * *
21941815 TGGGAGCACGCAGGGGGGACCGGGCCGA-CCTTCAGCTTACGCATTCTGCCTCTCCGGCCTGCTG
64 CGACAGCATGCA-GGGGGATCGGGCTGATCC-CCAGCTTGCGCATTCTGCCTCTCCGGCCAGCTG
* *
21941879 AGCGCCCGCACGCCCGTTTCGTGGGTTGGCT
127 AGCGCCCGCACGCTCTTTTCGTGGGTTGGCT
* * * * ** * * * * *
21941910 TCGGCATAGGGAGTTCATTCCATGTCTACG-CCCCAGTCGGACCGAGGGTTGTGGCAACTAGACC
1 TAGGCATACGGAGTTCATTCCATGTCTAAGATCGAACT-GGACCGAGGGTTGTGGTAGCGAGATC
* * * * * * *** *
21941974 GCCAGCATGCAAAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTATGCGTTTCCCATCAGCTAA
65 GACAGCATGC--AGGGGGATCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCAGCTGA
* * *
21942039 GTGCCCGCACGCT-TGTTTTGTGGGTTGACT
128 GCGCCCGCACGCTCT-TTTCGTGGGTTGGCT
*
21942069 TAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGACTGGACCGAGGGTTGTGGTAGCGAGATC
1 TAGGCATACGGAGTTCATT-CCATGTCTAAGATCGAACTGGACCGAGGGTTGTGGTAGCGAGATC
* * *
21942133 GACAGAATGCAGGAGGGATCGGGCTGATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGGCTGAG
65 GACAGCATGCAGG-GGGATCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAG
*
21942198 CGCCCGCACGCTCTTTTCATGGGTTGGCT
129 CGCCCGCACGCTCTTTTCGTGGGTTGGCT
*
21942227 TAGGCATACGAAGTTCATTCCATGTCTAAG
1 TAGGCATACGGAGTTCATTCCATGTCTAAG
21942257 CATACTGAAC
Statistics
Matches: 265, Mismatches: 69, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
156 3 0.01
157 27 0.10
158 113 0.43
159 113 0.43
160 9 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
TAGGCATACGGAGTTCATTCCATGTCTAAGATCGAACTGGACCGAGGGTTGTGGTAGCGAGATCG
ACAGCATGCAGGGGGATCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCG
CCCGCACGCTCTTTTCGTGGGTTGGCT
Found at i:21942638 original size:26 final size:26
Alignment explanation
Indices: 21942609--21942661 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21942599 GTAGACTTAG
*
21942609 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
21942635 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21942661 G
1 G
21942662 ATCGGTTCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21942892 original size:880 final size:868
Alignment explanation
Indices: 21940969--21943165 Score: 2553
Period size: 870 Copynumber: 2.5 Consensus size: 868
21940959 TCTTCAAAGG
* * * ** * *
21940969 CCGATCCCTGGCTTGCGCATTTTGCCTCTCCGATCGGCTGAGTGCCTGCAGGCCCGTTTCGTGGG
1 CCGATCCCAGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCTGCACGCCCGTTTCGTGGG
* * *
21941034 TTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAACCGGACCGAGGGTTGTGGCAGCG
66 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCG
* * * *
21941099 AGACCGGCAGCATGTAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCAGCCA
131 AGACCGGCAGCATGTAAAGGGGGACC-GGCCGATCCCCGGCTTGCGCATTATGCCTTTCCA-TCA
* * *
21941164 GCTCAGTGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
194 GCTAAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
21941229 ATCAGA-TCAGACCGAGGGTTGCGACAGTAGGATCGACAGCACACAGGGGGGATCGGGCTGATCT
259 ATCAGACT-AGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAGGGGGGATCGGGCTGATCC
** * * * * *
21941293 CCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAACACCCGCAGGCTCGTTTCGTGGGTTGGCTT
323 CCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTT
* ** *
21941358 AGGCATACGGAGTTCATTCCATGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCGGACCGA
388 AGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAACTCATTCCCAGTCTAAGATCAGACCGA
* * * * * * *
21941423 ACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAAGGGGGGACCAGGCCGATCCTTGACTTGCA
453 ACCAAGGGTTACGGCAGCAAGACCGGCAGCACGCAAGGGGGGACCAGGCCGATCCTCGACTTACA
* * ** *
21941488 CATTCTACCTCTCCGACCAACTGAGTGCCCACACGCTTGTTTCGTGGGTTGGCTTAGGCATACGA
518 CATTCTACCTCTCCGAACAACTGAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGA
* * * *
21941553 AGTTCGTTCCCATGTCTGAGCCCCAACCAAACCGAGGGTTGTGGCAGCAGGACCGACATCGGGAT
583 AGTTCATTCCCATGTCTAAGCCCCAACCAAACCAAGGGTTGTGGCAGCAGGACCGACAGCGGGAT
* * * *
21941618 CGGCAGCACGCAGAGGGGGATCGGGCTTATCCCTGGCTTACGCATTATACATCTTCGACCAGCCT
648 CGACAGCACGCAGAGGGGGATCGGGCTGATCCCTAGCTTACGCATTATACATCTCCGACCAGCCT
* * *
21941683 CTCCGGCCGGCTGAGTGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCA
713 CTCCAGCCGGCTGAGCGCCCACACGCTCATTTCGTGGGTAGACTTAGGCATACGGAGTTCATCCA
* * * * * *
21941748 TAGTCTAGGCATACGGAGTTCATTCCCAATCATAATCGAACCAGATCGAGGGTTACGGTAGCGAG
778 TAGTCTAAGCATACAGAGTTCATTCCCAATCATAATCGAACCAGACCAAGGGTTACGGCAGCAAG
* ** * *
21941813 ATTGGGAGCACGCAGGGGGGACCGGG
843 ATCGACAACACGCAGGGGGGACCGGA
* *
21941839 CCGA-CCTTCA-GCTTACGCATTCTGCCTCTCCGGCCTGCTGAGCGCCCGCACGCCCGTTTCGTG
1 CCGATCC--CAGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCTGCACGCCCGTTTCGTG
* * * *
21941902 GGTTGGCTTCGGCATAGGGAGTTCATTCCATGTCTACGCCCCAGTCGGACCGAGGGTTGTGGCAA
64 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAG
* * * * * *
21941967 CTAGACCGCCAGCATGCAAAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTATGCGTTTCCCAT
129 CGAGACCGGCAGCATGTAAAGGGGGACCG-GCCGATCCCCGGCTTGCGCATTATGCCTTT-CCAT
* *
21942032 CAGCTAAGTGCCCGCACGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
192 CAGCTAAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * ** * * *
21942097 AGATCGGACTGGACCGAGGGTTGTGGTAGC-GAGATCGACAGAATGCAGGAGGGATCGGGCTGAT
257 AGATCAGACTAGACCGAGGGTTGTGACAGCAG-GATCGACAGCACGCAGGGGGGATCGGGCTGAT
* * * *
21942161 CCCCAGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCTTTTCATGGGTTGGC
321 CCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGC
* * *
21942226 TTAGGCATACGAAGTTCATTCCATGTCTAAGCATACTGAACTCATTCCCAGTCTAAGATCAGACT
386 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAACTCATTCCCAGTCTAAGATCAGACC
* * *
21942291 GGATCAAGGGTTACGGCAGCAAGACCAGTAGCAGGATCG-ATAGGACGCGACGGGACCAGGCCGA
451 GAACCAAGGGTTACGGCAGCAAGACC-G--GCAGCA-CGCA-A-G--G-G--GGGACCAGGCCGA
* * * * *** *
21942355 TCCTCGGCTTACGCATTTTGCCTCTCCGAATGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGG
505 TCCTCGACTTACACATTCTACCTCTCCGAACAACTGAGCGCCCACACGCTCATTTCATGGGTTGG
* * * *
21942420 CTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACTAGACTAAGGGTTGTGGCAGCAGGA
570 CTTAGGCATACGAAGTTCATTCCCATGTCTAAGCCCCAACCAAACCAAGGGTTGTGGCAGCAGGA
* * * * * *
21942484 TCGGCAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCTGAT-CCTCAGCTTGCGCGTTATGCC
635 CCGACAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCT-AGCTTACGCATTATACA
* * * * *
21942548 TCTCCGATCAGCCTCTCTAGCTGGCTGAGCGCCCGCATGCTCATTTCGTGGGTAGACTTAGGCAT
699 TCTCCGACCAGCCTCTCCAGCCGGCTGAGCGCCCACACGCTCATTTCGTGGGTAGACTTAGGCAT
* * *** *
21942613 ACGGAGTTCATCCCTAGTCTAAGCATACAGAGTTCATTCCCAGTC-TAAGATCGGTTCGGACCAA
764 ACGGAGTTCATCCATAGTCTAAGCATACAGAGTTCATTCCCAATCAT-A-ATCGAACCAGACCAA
** * *
21942677 GGGTTGTGGCAGCAAGATCGACAACATGTAGGGGGGACCGGA
827 GGGTTACGGCAGCAAGATCGACAACACGCAGGGGGGACCGGA
*
21942719 CCGATCCCAGGCTTACGCATTCTGCCTCTCTGGCCGGCTGAGCGCCTGCACGCCCGTTTCGTGGG
1 CCGATCCCAGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCTGCACGCCCGTTTCGTGGG
*
21942784 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCG
66 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCG
* * * * * *
21942849 GGACAGGCAGCACGTAAAGGGCGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGATCG
131 AGACCGGCAGCATGTAAAGGGGGACC-GGCCGATCCCCGGCTTGCGCATTATGCCT-TTCCATCA
* ** * * * *
21942914 GC-ACAGCGGACGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCTAGACTAA
194 GCTA-AGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * * * *
21942978 GATCTGACCAGACTAAGGGTTACTGCCA-CAGGATTGACAGCACGCAGGGGCGGACCAGG-TCAA
258 GATCAGACTAGACCGAGGGTT-GTGACAGCAGGATCGACAGCACGCAGGGG-GGATCGGGCT-GA
* ** * *
21943041 TCCCCGGCTTGCGCATTTTGCCTCTCTAGCCTGCTGAGCGCTCGCACGCTCATTTCGTGGGTTGG
320 TCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGG
* * * ** ** *
21943106 CTTAGGCATATGGAGTTCATTTCACGTCTAAGCATGTGGAGTTCATTCCCAATCTAAGAT
385 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAACTCATTCCCAGTCTAAGAT
21943166 TTTGAGCCAC
Statistics
Matches: 1106, Mismatches: 192, Indels: 47
0.82 0.14 0.03
Matches are distributed among these distances:
869 4 0.00
870 397 0.36
871 6 0.01
873 6 0.01
874 3 0.00
875 1 0.00
877 1 0.00
878 5 0.00
879 189 0.17
880 372 0.34
881 122 0.11
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (868 bp):
CCGATCCCAGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCTGCACGCCCGTTTCGTGGG
TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCG
AGACCGGCAGCATGTAAAGGGGGACCGGCCGATCCCCGGCTTGCGCATTATGCCTTTCCATCAGC
TAAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGACTAGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAGGGGGGATCGGGCTGATCCCCG
GCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGCATACGGAACTCATTCCCAGTCTAAGATCAGACCGAACC
AAGGGTTACGGCAGCAAGACCGGCAGCACGCAAGGGGGGACCAGGCCGATCCTCGACTTACACAT
TCTACCTCTCCGAACAACTGAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGT
TCATTCCCATGTCTAAGCCCCAACCAAACCAAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGA
CAGCACGCAGAGGGGGATCGGGCTGATCCCTAGCTTACGCATTATACATCTCCGACCAGCCTCTC
CAGCCGGCTGAGCGCCCACACGCTCATTTCGTGGGTAGACTTAGGCATACGGAGTTCATCCATAG
TCTAAGCATACAGAGTTCATTCCCAATCATAATCGAACCAGACCAAGGGTTACGGCAGCAAGATC
GACAACACGCAGGGGGGACCGGA
Found at i:21943137 original size:159 final size:157
Alignment explanation
Indices: 21942722--21943138 Score: 385
Period size: 159 Copynumber: 2.6 Consensus size: 157
21942712 GACCGGACCG
* * * * *
21942722 ATCCCAGGCTTACGCATTCTGCCTCTCTGGCCGGCTGAGCGCCTGCACGCCCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTATGCCTCTCTAGCCGGCTGAGCGCC-GCACGCTCGTTTCGTGGGTTG
* * * * * *
21942787 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGA
65 GCTTAGGCATACGGAGTTCATTCCA-GTCTAAGCCCCAGCCAGATCAAGGGTTCTGCCAGCAGGA
* *
21942852 CAGGCAGCACGTAAAGGGCGACCAGGCCG
129 CAGACAGCACGTAAAGGGCGACCAGGCCA
* * ** * *
21942881 ATCCCCGGCTTGCGCATTATGCCTCT-TCGATCGGCACAGCGGACGCACGCTCGTTTCATGGGTT
1 ATCCCCGGCTTGCGCATTATGCCTCTCTAG-CCGGCTGAGC-GCCGCACGCTCGTTTCGTGGGTT
* * * ** *
21942945 GACTTATGCATACGGAGTTCATTCCTAGACTAAG-ATCTGACCAGA-CTAAGGGTTACTGCCA-C
64 GGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGCCCCAG-CCAGATC-AAGGGTT-CTGCCAGC
** * * *
21943007 AGGATTGACAGCACG-CAGGGGCGGACCAGGTCA
125 AGGACAGACAGCACGTAAAGGGC-GACCAGGCCA
* * *
21943040 ATCCCCGGCTTGCGCATTTTGCCTCTCTAGCCTGCTGAGCGCTCGCACGCTCATTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTATGCCTCTCTAGCCGGCTGAGCGC-CGCACGCTCGTTTCGTGGGTTG
* *
21943105 GCTTAGGCATATGGAGTTCATTTCACGTCTAAGC
65 GCTTAGGCATACGGAGTTCATTCCA-GTCTAAGC
21943139 ATGTGGAGTT
Statistics
Matches: 204, Mismatches: 43, Indels: 21
0.76 0.16 0.08
Matches are distributed among these distances:
158 12 0.06
159 183 0.90
160 9 0.04
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (157 bp):
ATCCCCGGCTTGCGCATTATGCCTCTCTAGCCGGCTGAGCGCCGCACGCTCGTTTCGTGGGTTGG
CTTAGGCATACGGAGTTCATTCCAGTCTAAGCCCCAGCCAGATCAAGGGTTCTGCCAGCAGGACA
GACAGCACGTAAAGGGCGACCAGGCCA
Found at i:21944273 original size:26 final size:26
Alignment explanation
Indices: 21944239--21944289 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21944229 TGACTTAGGA
21944239 ATACAGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAGTCTAAGC
* *
21944265 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
21944290 ATCGAACCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGC
Found at i:21944764 original size:158 final size:158
Alignment explanation
Indices: 21944263--21944764 Score: 598
Period size: 158 Copynumber: 3.2 Consensus size: 158
21944253 CCCAGTCTAA
* *
21944263 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCAAATCGAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * ** * * *
21944327 AACACGCAGGGGGGATCGGGCTGATCCTTGGCTTAAGCATTCTGCCTCTCCGACCGGCTGAGCGC
65 AGCACGCAGGGGGGATCGGGCAGATCCCAGGCTTACGCATTATGCCTCTCCGACCGGCTGAGTGC
* * **
21944392 CCGTACTCCCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTAGTTTCATGGGTTGGCTTAG
* * * * * * *
21944421 GCATACGGAGTTCATTCCATGTGTAAGCTCTAGCCGGACCGAGGGTTGTGGCAGCGGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
21944486 GCACGCAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAGTGC
66 GCACGCAG-GGGGGATCGGGCAGATCCCAGGCTTACGCATTATGCCTCTCCGACCGGCTGAGTGC
* *
21944551 CCGCACGCTCA-TTTCGTGGGTTGACTTAG
130 CCGCACGCT-AGTTTCATGGGTTGGCTTAG
* * *
21944580 GCATATGGAGTTCATTCC-TAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATTGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * **
21944644 AGCACGCAGGGGGGATCGGGTCAG-TCCCAGGCTTACGGATTTTGCCTTTCCGACCGATTGAGTG
65 AGCACGCAGGGGGGATCGGG-CAGATCCCAGGCTTACGCATTATGCCTCTCCGACCGGCTGAGTG
21944708 CCCGCACGCTAGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTAGTTTCATGGGTTGGCTTAG
*
21944738 GCATACGGAGTTCATTCCATGCCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
21944765 CATACGGAGT
Statistics
Matches: 286, Mismatches: 51, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
157 4 0.01
158 150 0.52
159 132 0.46
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGATCGGGCAGATCCCAGGCTTACGCATTATGCCTCTCCGACCGGCTGAGTGCC
CGCACGCTAGTTTCATGGGTTGGCTTAG
Found at i:21945136 original size:26 final size:26
Alignment explanation
Indices: 21945106--21945158 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21945096 GTTGACTTAG
*
21945106 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTAATCCCCAATCTAA
* * *
21945132 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGAAGTTAATCCCCAATCTAA
21945158 G
1 G
21945159 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTAATCCCCAATCTAA
Found at i:21945502 original size:159 final size:158
Alignment explanation
Indices: 21945132--21945502 Score: 379
Period size: 159 Copynumber: 2.3 Consensus size: 158
21945122 CCCAATCTAA
* * * * ** ** *
21945132 GCATACGGAGTTAATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCGAATCGGACTGAGGGTTGCGGTAGTAGGACCGACA
* * * * * *
21945197 GCACCTAGAGGGGACCAGACCGATCCCCGGCTTACGCATTCTGCCTCTCCGATTGATTGAGTGCC
66 GCACCTAGAGGGGACCAGACCAATCCCCGACTTACGCATTATGCCTCTCCGATCGATTCAGCGCC
* *
21945262 CAAACGCCCGTTTCGTGGGTTGGCTTAG
131 CAAACGCCCGTTTCATGGGTTGACTTAG
* * ** * * * ** *
21945290 GCATAGGGAGTTCATTCCATGTCTAAGCCCCATTCGGA-TCGAAGGTTATGGTAGTGGGACCGAC
1 GCATACGGAGTTCATTCCAAGTCTAAGATCGAATCGGACT-GAGGGTTGCGGTAGTAGGACCGAC
* * * * *
21945354 AGCACGC-AGAGGGGGATCGGGCCAATCCCCGACTTACGCATTATGCCTCTTCGATCGGTTCAGC
65 AGCAC-CTAGA-GGGGACCAGACCAATCCCCGACTTACGCATTATGCCTCTCCGATCGATTCAGC
* *
21945418 GCCCGAATGCTCC-TTTCATGGGTTGACTTAG
128 GCCCAAACGC-CCGTTTCATGGGTTGACTTAG
21945449 GCATACGGAGTTCATTCCAAGTCTAAGATCGAATCGGACTGAGGGTTGCGGTAG
1 GCATACGGAGTTCATTCCAAGTCTAAGATCGAATCGGACTGAGGGTTGCGGTAG
21945503 CAGAATTGAC
Statistics
Matches: 165, Mismatches: 43, Indels: 9
0.76 0.20 0.04
Matches are distributed among these distances:
158 52 0.32
159 110 0.67
160 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAAGTCTAAGATCGAATCGGACTGAGGGTTGCGGTAGTAGGACCGACA
GCACCTAGAGGGGACCAGACCAATCCCCGACTTACGCATTATGCCTCTCCGATCGATTCAGCGCC
CAAACGCCCGTTTCATGGGTTGACTTAG
Found at i:21945644 original size:26 final size:26
Alignment explanation
Indices: 21945608--21945660 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21945598 GTTGGCTTAG
21945608 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21945634 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21945660 G
1 G
21945661 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21945855 original size:26 final size:26
Alignment explanation
Indices: 21945817--21945869 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21945807 GTTGACTTAG
*
21945817 GCATACGGTGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21945843 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21945869 G
1 G
21945870 ATCAAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21947393 original size:158 final size:155
Alignment explanation
Indices: 21946918--21947577 Score: 487
Period size: 158 Copynumber: 4.2 Consensus size: 155
21946908 CCCAGTCTAA
* * * *
21946918 GCATACA-AAGTTCATTCCCAGTTTAAGATCAAACTGGGCCGAGGGTTGCGGCAGCAGGATCGAC
1 GCATACAGAA-TTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCGAC
* * *
21946982 AGCACGTAGTAGGGACCGGGCCGATCCCCGACTTGCGTATTCTGCCTCTCCGGCCGGCTGAGCGC
65 AGCACGAAG--GGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCAGG-CGGCTGAGCGC
* * **
21947047 CCGGACACCCATTTCGTGGGTTGGCTTAG
127 CCGCACGCCTGTTTCGTGGGTTGGCTTAG
** * ** * * ***
21947076 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CTGAACTGAGGGTTGTGGCAATGGGATCGA
1 GCATACAGAATTCATTCCCA-GTCTAAGATC-AGACTGGACTGAGGGTTGCGGCAGCAGGATCGA
* * * * * * *
21947139 CAGCACGTAGAGGGGGATCGGGTCGATCCCCGACTAGCGCATTATGCCTCTCTGGCTTGCTCAGC
64 CAGCACG-A-A-GGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCAGGC-GGCTGAGC
* **
21947204 GCCCGCACG-CTCGTTTCATGGGTTGAATTAG
125 GCCCGCACGCCT-GTTTCGTGGGTTGGCTTAG
* * * *
21947235 GCATACAGAATTCATTCCCAATCTAAGATCAGATTGGACTTAGGGTTGCGGTAGCAGGATCGACA
1 GCATACAGAATTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCGACA
* *
21947300 GCACGCAAGGGAGACCGGGCC-AGT-CCCTAGCTTGCGCATTCTGCCTCTAAGGTCGGCTGAGCG
66 GCACG-AAGGG-GACCGGGCCGA-TCCCCGA-CTTGCGCATTCTGCCTCTCAGG-CGGCTGAGCG
21947363 CCCGCACGCCTGTTTCGTGGGTTGGCTTAG
126 CCCGCACGCCTGTTTCGTGGGTTGGCTTAG
* * ** * * * *
21947393 GCATAC-GCAGTTCATTCCCTGTCTAAGCCCAGTC-GGA-TCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACAG-AATTCATTCCCAGTCTAAGATCAGACTGGACT-GAGGGTTGCGGCAGCAGGATCGA
* * * * * * ** * *
21947455 CAGCATGCAGAGGGGGACGGGGTCGATCCCCGGCTTGCGCATTCCGCCTCTCCGATTGGTTGAGT
64 CAGCA--C-GAAGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCAG-GCGGCTGAGC
* *
21947520 GCCCGCACG-CTCGTTTTGTGGGTTGACTTAG
125 GCCCGCACGCCT-GTTTCGTGGGTTGGCTTAG
** *
21947551 GCATATGGAGTTCA-TCCCTAGTCTAAG
1 GCATACAGAATTCATTCCC-AGTCTAAG
21947578 CATACAGAGT
Statistics
Matches: 391, Mismatches: 85, Indels: 52
0.74 0.16 0.10
Matches are distributed among these distances:
156 1 0.00
157 44 0.11
158 211 0.54
159 129 0.33
160 5 0.01
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (155 bp):
GCATACAGAATTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCGACA
GCACGAAGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCAGGCGGCTGAGCGCCCGC
ACGCCTGTTTCGTGGGTTGGCTTAG
Found at i:21947893 original size:342 final size:342
Alignment explanation
Indices: 21947235--21947919 Score: 896
Period size: 342 Copynumber: 2.0 Consensus size: 342
21947225 GTTGAATTAG
* ** **
21947235 GCATACAGAATTCATTCCCAATCTAAGATCAGATTGGACTTAGGGTTGCGGTAGCAGGATCGACA
1 GCATACAGAATTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCAATAGCAGGATCGACA
* * * *
21947300 GCACGCAAGGGAGACCGGGCCAGTCCCTAGCTTGCGCATTCTGCCTCTAAGGTCGGCTGAGCGCC
66 GCACCCAAGGGAGACCGGGCCAGTCCCGAGCTTGCGCATTCTGCCTCTAAGATCGGCTGAACGCC
* ** * **
21947365 CGCACGCCTGTTTCGTGGGTTGGCTTAGGCATACGCAGTTCATTCCCTGTCTAAGCCCAGTCGGA
131 CGCACACCCATTTCATGGGTTGGCTTAGGCATACGCAGTTCATTCCAAGTCTAAGCCCAGTCGGA
* * * *
21947430 TCGAGGGTTGTGGCAGCGGGACCGACAGCATGCAGAGGGGGACGGGGTCGATCCCCGGCTTGCGC
196 TCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGAGGGACGAGCTCGATCCCCGGCTTGCGC
* * * ** ** * *
21947495 ATTCCGCCTCTCCGATTGGTTGAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGGA
261 ATTACGCCCCTCCGATTGGCTGAACGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGA
21947560 GTTCATCCCTAGTCTAA
326 GTTCATCCCTAGTCTAA
* * *
21947577 GCATACAGAGTTCATTCCCAGTCTAATATCAGACTGGACCGAGGGTTGCAATAGCAGGATCGACA
1 GCATACAGAATTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCAATAGCAGGATCGACA
* **
21947642 GCACCCAAAGGG-GATCGGGCC-GATCTCCGA-CTTGCGCATTCTGCCTCTTCGATCGGCTGAAC
66 GCACCC-AAGGGAGACCGGGCCAG-TC-CCGAGCTTGCGCATTCTGCCTCTAAGATCGGCTGAAC
* * *
21947704 GCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCTAAGTCTAAGCCCCAGT
128 GCCCGCACACCCATTTCATGGGTTGGCTTAGGCATACGCAGTTCATTCCAAGTCTAAG-CCCAGT
* *
21947769 CGGATCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGAGGGATCGAGCT-GATCCCCGGCT
192 CGGATCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGAGGGA-CGAGCTCGATCCCCGGCT
* *
21947833 TGCGCATTATGCCCCTCC-AGTTGGCTGAACGCCCGTACGCTCG-TTCATGGGTTAACTTAGGCA
256 TGCGCATTACGCCCCTCCGA-TTGGCTGAACGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCA
*
21947896 TACGGAGTTCATTCCTAGTCTAA
320 TACGGAGTTCATCCCTAGTCTAA
21947919 G
1 G
21947920 ATTAGATCGG
Statistics
Matches: 295, Mismatches: 42, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
341 1 0.00
342 189 0.64
343 101 0.34
344 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (342 bp):
GCATACAGAATTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCAATAGCAGGATCGACA
GCACCCAAGGGAGACCGGGCCAGTCCCGAGCTTGCGCATTCTGCCTCTAAGATCGGCTGAACGCC
CGCACACCCATTTCATGGGTTGGCTTAGGCATACGCAGTTCATTCCAAGTCTAAGCCCAGTCGGA
TCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGAGGGACGAGCTCGATCCCCGGCTTGCGC
ATTACGCCCCTCCGATTGGCTGAACGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGA
GTTCATCCCTAGTCTAA
Found at i:21948068 original size:158 final size:158
Alignment explanation
Indices: 21947577--21948077 Score: 503
Period size: 158 Copynumber: 3.2 Consensus size: 158
21947567 CCTAGTCTAA
* * * * **
21947577 GCATACAGAGTTCATTCCCAGTCTAATATCAGA-CTGGACCGAGGGTTGCAATAGCAGGATCGAC
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATC-GGACTGAGGGTTGCAGCAGCAGGATCGAC
* ** * * * *
21947641 AGCACCCAAAGGGGATCGGGCCGATCTCCGACTTGCGCATTCTGCCTCTTCGATCGGCTGAACGC
65 AGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAACGC
* * *
21947706 CCGCACACCCATTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** ** *
21947735 GCATAGGGAGTTCATT-CTAAGTCTAAGCCCCAG-TCGGA-TCGAGGGTTGTGGCAGCGGGATCG
1 GCATACGGAGTTCATTCCT-AGTCTAAG-ATCAGATCGGACT-GAGGGTTGCAGCAGCAGGATCG
* * * * * *
21947797 GCAGCACGCAGAGAGGGATCGAGCTGATCCCCGGCTTGCGCATTATGCCCCTCC-AGTTGGCTGA
63 ACAGCACGCAG-GGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-TCGGCTGA
* **
21947861 ACGCCCGTACGCTCG-TTCATGGGTTAACTTAG
126 ACGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
21947893 GCATACGGAGTTCATTCCTAGTCTAAGATTAGATCGGACTGAGGGTTACAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTGCAGCAGCAGGATCGACA
* * * * * * * * *
21947958 GCACGTAGGGGGGACCAAGCCGATCCCCGGCTTGCACATTCTACCTCTCCGACCGACTGAGCACC
66 GCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAACGCC
21948023 CGCACGCTCGTTTCATGGGTTGGCTTAG
131 CGCACGCTCGTTTCATGGGTTGGCTTAG
21948051 GCATACGGAGTTCATTCCGT-GTCTAAG
1 GCATACGGAGTTCATTCC-TAGTCTAAG
21948078 CGTACGGAGT
Statistics
Matches: 273, Mismatches: 58, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
157 54 0.20
158 160 0.59
159 59 0.22
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTGCAGCAGCAGGATCGACA
GCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAACGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:21948101 original size:26 final size:26
Alignment explanation
Indices: 21948054--21948103 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
21948044 GGCTTAGGCA
***
21948054 TACGGAGTTCATTCCGTGTCTAAGCG
1 TACGGAGTTCATTCCCAATCTAAGCG
21948080 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
21948104 ATTGGACCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCG
Found at i:21948638 original size:26 final size:26
Alignment explanation
Indices: 21948602--21948654 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21948592 GTTGACTTAG
21948602 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * * *
21948628 GCATACGGAGTTTATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21948654 G
1 G
21948655 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21948916 original size:354 final size:353
Alignment explanation
Indices: 21948439--21949193 Score: 822
Period size: 354 Copynumber: 2.1 Consensus size: 353
21948429 TAAGCGTACA
* **
21948439 GAGTTCATTCCCA-GTCTAAGATCAGA-CCGGACCGAGGGTTACAGCAGCAGGACCAACAGCAGG
1 GAGTTCATT-CCATGTCTAAG-TCACAGCCGGACCGAGGGTTGTAGCAGCAGGACCAACAGCAGG
* * * * ** *
21948502 ATCGACAACATGTAGGGGGGACCAAGCTGATCCTCGGCTTACGTATTCTACCTCTCCGATCGGCT
64 ATCGACAACACGCAGGGGGGACCAAGCTGATCCCCGACTTACACATTATACCTCTCCGATCGGCT
* * * *
21948567 GAGCGC-CTGTATGCTCATTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATCCCCAGTCTAAGC
129 GAGCACTC-GCACGCTCATTTCATGGGTTGACTTAGGCATACGA-AGTTCATCCCCAGTCTAAGC
* * * * *
21948630 ATACGGAGTTTATTCTCAGTCTAAGATCAGACCAGATCGAGGGTTACGGTAGCAGGATCGACAGC
192 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACGGCAGCAGGATCGACAGC
* ** *
21948695 ACGCAGAAGGGACC-GAGTTAATCCCTAGCTTGCGCATTCTGTCTCTCCGACCGGTTGAACACCC
257 ACGCAG-AGGGACCAG-GTTAATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTGAACACCC
* **
21948759 GCATGCTTGTTTCA-TGGGTTGAC-TAGGAATACG
320 GCACGCCCGTTT-AGTGGGTTGACTTAGGAATACG
* * *
21948792 GAGTTCATTCCATGTCTAAGTCACAGCCGAACCGAGGGTTGTTGCAGCAGGACCGACAGCAGGAT
1 GAGTTCATTCCATGTCTAAGTCACAGCCGGACCGAGGGTTGTAGCAGCAGGACCAACAGCAGGAT
* * ** * * *
21948857 CGACAGCACGCAGAGGGGGCCCTGGCTGATCCCCGACTTGCACATTATGCCTTTCCGATCGGCTG
66 CGACAACACGCAG-GGGGGACCAAGCTGATCCCCGACTTACACATTATACCTCTCCGATCGGCTG
* * *
21948922 AGCACTCGCACGCTCGTTTTATGGGTTGACTTTGGCATACGAAGTTCATCCCCAGTCTAAGCATA
130 AGCACTCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATA
* * * * * * *
21948987 TGGAGTTCATTCCCAGTTTAAGATCGGATCAAACCGAGGGTTGCGGCAGCAGGATCGATAGGACG
195 CGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACGGCAGCAGGATCGACAGCACG
* * * * * * * * *
21949052 CAGGGGGACCAGGTTGATCCCCGGCTTGTGCATTTTACCTCTCTGGCCGGCTGAGCGCCCGCACG
260 CAGAGGGACCAGGTTAATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTGAACACCCGCACG
* * *
21949117 CCCGTTTAGTGGGTTGGCTTAGGCATAGG
325 CCCGTTTAGTGGGTTGACTTAGGAATACG
* * * * *
21949146 GAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAAGGTTGTGGCAGC
1 GAGTTCATTCCATGTCTAAGTCACAGCCGGACCGAGGGTTGTAGCAGC
21949194 GAGACCGGCT
Statistics
Matches: 330, Mismatches: 64, Indels: 15
0.81 0.16 0.04
Matches are distributed among these distances:
352 8 0.02
353 119 0.36
354 201 0.61
355 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.23
Consensus pattern (353 bp):
GAGTTCATTCCATGTCTAAGTCACAGCCGGACCGAGGGTTGTAGCAGCAGGACCAACAGCAGGAT
CGACAACACGCAGGGGGGACCAAGCTGATCCCCGACTTACACATTATACCTCTCCGATCGGCTGA
GCACTCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACGGCAGCAGGATCGACAGCACGC
AGAGGGACCAGGTTAATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTGAACACCCGCACGC
CCGTTTAGTGGGTTGACTTAGGAATACG
Found at i:21949653 original size:26 final size:26
Alignment explanation
Indices: 21949602--21949654 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21949592 GTTGACTTAG
* *
21949602 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCACCAGCCTAA
* *
21949628 GCATACGGAGTTCATTACCTGCCTAA
1 GCATACGGAGTTCATCACCAGCCTAA
21949654 G
1 G
21949655 ATCGTACTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGCCTAA
Found at i:21949918 original size:159 final size:158
Alignment explanation
Indices: 21949699--21950131 Score: 458
Period size: 159 Copynumber: 2.7 Consensus size: 158
21949689 GGCAACACAC
* * * * * *
21949699 AGGGGGGACCGGGCCGATCCTCGGCTTTCGCATTCTACCTCTTCGGTCGGCTGAGTGCCCGCACG
1 AGGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCATG
* * ** **
21949764 CTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGATTGA
66 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGA
* *
21949828 GGGTTGTAGCAATG-GGACCGACAGCACGA
131 GGGTGGTAGC--TGAAGACCGACAGCACGA
* * * * * *
21949857 AGAGGGGGACCGGGTTGATCCTCAGCTTACGCATTATGCCTCTCCGGCCAGCTCAGCGCCCGCAT
1 AG-GGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCAT
* ** * * ***
21949922 GCTCATTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCCTGTCTAAG-ATTGGACCAGACCG
65 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCG
* * *
21949986 AGGGTGGTGGCTGCAAGATCGACAGCACGC
130 AGGGTGGTAGCTG-AAGACCGACAGCACGA
* * * * * **
21950016 AGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGTGTG
1 AGGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCATG
*
21950081 CTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
21950132 TACGGAGTTC
Statistics
Matches: 220, Mismatches: 50, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
157 2 0.01
158 96 0.44
159 122 0.55
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
AGGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCATG
CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGA
GGGTGGTAGCTGAAGACCGACAGCACGA
Found at i:21950134 original size:26 final size:26
Alignment explanation
Indices: 21950103--21950154 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21950093 GTTGGCTTAG
21950103 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21950129 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21950155 TATTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21950855 original size:26 final size:26
Alignment explanation
Indices: 21950825--21950877 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21950815 GTTGACTGAG
*
21950825 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*
21950851 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
21950877 G
1 G
21950878 GTCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:21951115 original size:65 final size:65
Alignment explanation
Indices: 21951040--21951163 Score: 230
Period size: 65 Copynumber: 1.9 Consensus size: 65
21951030 ACTTAGGCAT
* *
21951040 ACGGAGTTCATTCTTAGTCTAAGATCGGACCGGACCAAGGGTTGTTGTAGCAGGATTGACAGCAC
1 ACGGAGTTCATTCTTAGTCTAAGATCGGACCGAACCAAGGGTTGCTGTAGCAGGATTGACAGCAC
21951105 ACGGAGTTCATTCTTAGTCTAAGATCGGACCGAACCAAGGGTTGCTGTAGCAGGATTGA
1 ACGGAGTTCATTCTTAGTCTAAGATCGGACCGAACCAAGGGTTGCTGTAGCAGGATTGA
21951164 TAGTACACAG
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 57 1.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (65 bp):
ACGGAGTTCATTCTTAGTCTAAGATCGGACCGAACCAAGGGTTGCTGTAGCAGGATTGACAGCAC
Found at i:21951661 original size:26 final size:26
Alignment explanation
Indices: 21951625--21951677 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21951615 GTTGACTTAG
*
21951625 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
21951651 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21951677 G
1 G
21951678 ATCAAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21952129 original size:158 final size:157
Alignment explanation
Indices: 21951651--21952151 Score: 453
Period size: 159 Copynumber: 3.2 Consensus size: 157
21951641 CCCAGTCTAA
* * * * * * *
21951651 GCATACAGAGTTCATTCC-TAGTCTAAGATCAAATCGGACCGAGGGTTGCGACAGTAAGATAGGC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGAC
* * ** * * * *
21951715 AG-ACGCAGGGGTGACCGGGCCGATCCCTAACTTGTGCATTCTGCCTCTCTGGCCGACTGAGCGC
65 AGCACGTAGGGGGGAATGGGCCGATCCC-GACTTGCGCATTCTGCCTCTCAGACCGACTGAGCGC
* * *
21951779 CCGCATGCCCATTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * ** * * **
21951808 GTGTAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGCGGGA-CTGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGTAGGATC-GA
* ** * * *
21951871 CAGCACATAGAGGGGG-ATCGAACTGATCCCCGGCTTGCGCATTAC-GCCTCTTCAGTA--GGCT
64 CAGCACGTAG-GGGGGAAT-GGGCCGAT-CCCGACTTGCGCATT-CTGCCTC-TCAG-ACCGACT
* * * *
21951932 CAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAT
123 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
21951967 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGAC
* * *
21952031 AGCATGTAGGGGGGAATGGGCCGATCCTCGACTTGCACATTCTGCCTCTCCGACCGACTGAGCGC
65 AGCACGTAGGGGGGAATGGGCCGATCC-CGACTTGCGCATTCTGCCTCTCAGACCGACTGAGCGC
*
21952096 CCGCACGCTCGTTCCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
21952125 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
21952152 CATACGGAGT
Statistics
Matches: 264, Mismatches: 61, Indels: 37
0.73 0.17 0.10
Matches are distributed among these distances:
156 1 0.00
157 53 0.20
158 92 0.35
159 107 0.41
160 11 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACA
GCACGTAGGGGGGAATGGGCCGATCCCGACTTGCGCATTCTGCCTCTCAGACCGACTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:21952154 original size:26 final size:26
Alignment explanation
Indices: 21952125--21952176 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21952115 GTTGGCTTAG
21952125 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21952151 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21952177 TATTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21953179 original size:158 final size:157
Alignment explanation
Indices: 21952872--21953212 Score: 384
Period size: 158 Copynumber: 2.2 Consensus size: 157
21952862 CCTAGTCTAC
* * * * *
21952872 GCATATGGAGTTCATTCCCAGTCTAAGAT--CAGACCGAACCGAGGGTTGGGGCAGCAGGATCGA
1 GCATAGGGAGTTCATTCCCAGTCTAA-TTCCCAG-TCGAACAGAGGATTGGGGCAGCAGGATCGA
* * * * * ** *
21952935 CAGCACGCAGGGGGACCGAGTCGATCCCTGGCTTGAACATTCTGCCTCTCCGGTCGGTTGACCGC
64 CAGCACACAGGGGGACCGAGCCGATCCCCGGCTTGAACATTATGCCTCTCCGGCCGACTCACCGC
* * * *
21953000 CCGCACGCGCGTTTCGTGGGTTGGCTTTG
129 CCGCACGAGCATTTCGTGGGTTGACTTAG
* *
21953029 GCATAGGGAGTTCATTCCACA-TCTAATTCCCAGTCGAACAGAGGATTGTGGCAGCGGGATCGAC
1 GCATAGGGAGTTCATTCC-CAGTCTAATTCCCAGTCGAACAGAGGATTGGGGCAGCAGGATCGAC
* * *
21953093 AGCACACAGAGGGTGACGGA-CCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGACTCAGCG
65 AGCACACAG-GGG-GACCGAGCCGATCCCCGGCTTGAACATTATGCCTCTCCGGCCGACTCACCG
* *
21953157 CCCGTACGATCATTTCGTGGGTTGACTTAG
128 CCCGCACGAGCATTTCGTGGGTTGACTTAG
*
21953187 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
21953213 GATCGGATAG
Statistics
Matches: 153, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
156 1 0.01
157 58 0.38
158 89 0.58
159 5 0.03
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATAGGGAGTTCATTCCCAGTCTAATTCCCAGTCGAACAGAGGATTGGGGCAGCAGGATCGACA
GCACACAGGGGGACCGAGCCGATCCCCGGCTTGAACATTATGCCTCTCCGGCCGACTCACCGCCC
GCACGAGCATTTCGTGGGTTGACTTAG
Found at i:21954248 original size:26 final size:26
Alignment explanation
Indices: 21954197--21954249 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21954187 GTTGGCTTAG
*
21954197 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGCCTAA
*
21954223 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACAGAGTTCATT-CCATGCCTAA
21954249 G
1 G
21954250 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGCCTAA
Found at i:21959512 original size:26 final size:26
Alignment explanation
Indices: 21959475--21959527 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21959465 GTTGACTTAG
*
21959475 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
21959501 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21959527 G
1 G
21959528 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21959970 original size:26 final size:25
Alignment explanation
Indices: 21959940--21959991 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
21959930 GTTGGTTTAG
21959940 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCC-AGTCTAA
**
21959966 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
21959991 G
1 G
21959992 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:21962086 original size:26 final size:26
Alignment explanation
Indices: 21962038--21962088 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21962028 TGGCTTAGGT
*
21962038 ATACGGAGTTCATTCCATGTCTAAGC
1 ATACGGAGTTCATTCCATATCTAAGC
21962064 ATACGGAGTTCATTCCCA-ATCTAAG
1 ATACGGAGTTCATT-CCATATCTAAG
21962089 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATATCTAAGC
Found at i:21962686 original size:21 final size:19
Alignment explanation
Indices: 21962636--21962677 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
21962626 GAGGGTTGTG
21962636 GCAGCGGGACCGGCAGCAC
1 GCAGCGGGACCGGCAGCAC
21962655 GCAGCGGGACCGGCAGCAC
1 GCAGCGGGACCGGCAGCAC
21962674 GCAG
1 GCAG
21962678 AGGGGGACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.21, C:0.36, G:0.43, T:0.00
Consensus pattern (19 bp):
GCAGCGGGACCGGCAGCAC
Found at i:21962951 original size:26 final size:26
Alignment explanation
Indices: 21962921--21962973 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21962911 GTTAGCCTAG
21962921 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
21962947 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21962973 G
1 G
21962974 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21963690 original size:26 final size:26
Alignment explanation
Indices: 21963654--21963706 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21963644 GTTGGCTTAG
21963654 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21963680 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21963706 G
1 G
21963707 ATCCGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21965176 original size:26 final size:26
Alignment explanation
Indices: 21965147--21965199 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21965137 GTTGGCTTAG
21965147 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21965173 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21965199 G
1 G
21965200 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21965915 original size:26 final size:26
Alignment explanation
Indices: 21965867--21965919 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21965857 GTTGACTTAG
* *
21965867 GCATACGGAGTTCATCCTTAGTCTAA
1 GCATACAGAGTTCATCCTCAGTCTAA
21965893 GCATACAGAGTTCATTCC-CAGTCTAA
1 GCATACAGAGTTCA-TCCTCAGTCTAA
21965919 G
1 G
21965920 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCTCAGTCTAA
Found at i:21966303 original size:43 final size:43
Alignment explanation
Indices: 21966249--21966376 Score: 238
Period size: 43 Copynumber: 3.0 Consensus size: 43
21966239 GGATCGGATT
21966249 GAGGGTTGCGCTAGTAAGATCGACAGCACGTAGTGGGGATCGG
1 GAGGGTTGCGCTAGTAAGATCGACAGCACGTAGTGGGGATCGG
*
21966292 GAGGGTTGCGCTAGTAAGATCGATAGCACGTAGTGGGGATCGG
1 GAGGGTTGCGCTAGTAAGATCGACAGCACGTAGTGGGGATCGG
*
21966335 GAGGGTTGCGCTACTAAGATCGACAGCACGTAGTGGGGATCG
1 GAGGGTTGCGCTAGTAAGATCGACAGCACGTAGTGGGGATCG
21966377 AGCCGATCCC
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 82 1.00
ACGTcount: A:0.23, C:0.16, G:0.41, T:0.20
Consensus pattern (43 bp):
GAGGGTTGCGCTAGTAAGATCGACAGCACGTAGTGGGGATCGG
Found at i:21967149 original size:26 final size:26
Alignment explanation
Indices: 21967109--21967161 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21967099 GTTGGCTTAG
*
21967109 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGGTCATTCCCA-GTCTAA
21967135 GCATACGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
21967161 G
1 G
21967162 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:21968204 original size:26 final size:26
Alignment explanation
Indices: 21968174--21968226 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21968164 GTTGACTTAT
*
21968174 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
21968200 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21968226 G
1 G
21968227 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21968387 original size:26 final size:26
Alignment explanation
Indices: 21968358--21968410 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21968348 GTTGGCTTAG
*
21968358 GCATAGGGAGTTCACT-CCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
*
21968384 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
21968410 G
1 G
21968411 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:21969244 original size:26 final size:26
Alignment explanation
Indices: 21969208--21969260 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21969198 GTTGACTTAG
21969208 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21969234 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21969260 G
1 G
21969261 ATCAAAACAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21969974 original size:170 final size:170
Alignment explanation
Indices: 21969714--21970038 Score: 424
Period size: 170 Copynumber: 1.9 Consensus size: 170
21969704 CCGGACCGAG
* *
21969714 GGTTATGGCAACAGGACCAACAGCAGGATCGACAGCACGTAAAGGGGACCGGGCCAGTCCCTGGC
1 GGTTATGGCAACAGGACCAACAGCAGGATCGACAGCACGAAAAGGGGACCGGGCCAGTCCCCGGC
* * * *
21969779 TTGCGCATTCTCCCTCTCAGGCCGATTGAGCGCCTGTACGCTCGTTTCGTGGGTTGGCTTAGGCA
66 TTGCGCATTATCCCTCTCAGGCCGATTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCA
*
21969844 TACGAAGTTCAT-TCCATGTCTAAGCCTCAGCCAGACCTAA
131 TACGAAGTTCATCCCCA-GTCTAAGCCTCAGCCAGACCTAA
* * * * * *
21969884 GGTTGTGGCAGCAGGACCAACAG-TGAGATCGACAGCATGCAAAAGGGGATCGGG-CTGATCCCC
1 GGTTATGGCAACAGGACCAACAGCAG-GATCGACAGCACG-AAAAGGGGACCGGGCCAG-TCCCC
* * * * *
21969947 GGCTTGCGCATTAT-GCTTTCCGGCCGATTGAGTGCCCGAACGCTTGTTTCGTGGGTTGACTTAG
63 GGCTTGCGCATTATCCCTCTCAGGCCGATTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAG
21970011 GCATACGAAGTTCATCCCCAGTCTAAGC
128 GCATACGAAGTTCATCCCCAGTCTAAGC
21970039 ATACGGAGTT
Statistics
Matches: 133, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
169 1 0.01
170 100 0.75
171 32 0.24
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (170 bp):
GGTTATGGCAACAGGACCAACAGCAGGATCGACAGCACGAAAAGGGGACCGGGCCAGTCCCCGGC
TTGCGCATTATCCCTCTCAGGCCGATTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCA
TACGAAGTTCATCCCCAGTCTAAGCCTCAGCCAGACCTAA
Found at i:21970048 original size:26 final size:26
Alignment explanation
Indices: 21970011--21970063 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21970001 GTTGACTTAG
21970011 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
21970037 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21970063 G
1 G
21970064 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21970650 original size:314 final size:316
Alignment explanation
Indices: 21970037--21970712 Score: 880
Period size: 314 Copynumber: 2.1 Consensus size: 316
21970027 CCCAGTCTAA
*
21970037 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCAAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATAGGACAGGACCAAGGGTTGCGACAG-AGGATCGACA
* * **
21970102 GCACGCAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCCCTCCAGCCGGCTGAGTGCC
65 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCCCTCCAGCCGGCTGAGCACC
* ** *
21970167 CGTATGCCCTTTTCGTGGGTTAGCTTAGGCATAGGAAGTTCATTCCAAGTCTAAGCCTAAACCGG
130 CGTACGCCAGTTTCGTGGGTTAGCTTAGGCATAGGAAGTTCATTCCAAGTCTAAGCCTAAACCAG
* * * * * *
21970232 ATCGAGGGTTGTGGCAGCGGGACTAGTAGCACGTAGAGGGGGATCGGGCCGATCCTCGGCTTACA
195 ACCGAGGGTTGTGGCAGCGGGACGAGCAGCACGCAGAGGGGGACCAGGCCGATCCTCGGCTTACA
* * *
21970297 CATTATGCCTCTTCGGCTGGCTCAACGCCCGCACGCTCGTTTCTTAGGTTGACTTAC
260 CATTATGCCTCTCCGGCTAGCTCAACGCCCGCACGCTCGTTTCGTAGGTTGACTTAC
* *
21970354 GCATACGGAGTTCATTCCCAGTCTAAGATAGGATC-GGGCCAAGGGTTGCGATA-ACGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATAGGA-CAGGACCAAGGGTTGCGACAGA-GGATCGAC
* * * * *
21970417 AGCACGCAGGGGGGACCGGGTCGATCCCCTGCTTACG-ATTCTGCCTCTCCGGCCGGTTGAGCAC
64 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCCCTCCAGCCGGCTGAGCAC
* * * *
21970481 CCGTACGCCAGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCT-AGCC
129 CCGTACGCCAGTTTCGTGGGTTAGCTTAGGCATAGGAAGTTCATTCCAAGTCTAAG-CCTAAACC
* *
21970545 AGACCGA-GGTTGTGGTAGCGGGACCGA-CAGCACGCAGAGGGGGACCAGGTCGATCC-CTGGCT
193 AGACCGAGGGTTGTGGCAGCGGGA-CGAGCAGCACGCAGAGGGGGACCAGGCCGATCCTC-GGCT
* * * * *
21970607 TGCGCATTATGCCTCTCCGGCTAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
256 TACACATTATGCCTCTCCGGCTAGCTCAACGCCCGCACGCTCGTTTCGTAGGTTGACTTAC
* * * *
21970668 GCATACAGAGTTCATTCCCAGTATAAGATTGGACCGGACCGAAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATAGGACAGGACC-AAGG
21970713 TTGTGGCAGC
Statistics
Matches: 312, Mismatches: 40, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
313 2 0.01
314 130 0.42
315 87 0.28
316 44 0.14
317 48 0.15
318 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.22
Consensus pattern (316 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATAGGACAGGACCAAGGGTTGCGACAGAGGATCGACAG
CACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCCCTCCAGCCGGCTGAGCACCC
GTACGCCAGTTTCGTGGGTTAGCTTAGGCATAGGAAGTTCATTCCAAGTCTAAGCCTAAACCAGA
CCGAGGGTTGTGGCAGCGGGACGAGCAGCACGCAGAGGGGGACCAGGCCGATCCTCGGCTTACAC
ATTATGCCTCTCCGGCTAGCTCAACGCCCGCACGCTCGTTTCGTAGGTTGACTTAC
Found at i:21970670 original size:158 final size:155
Alignment explanation
Indices: 21970097--21970718 Score: 533
Period size: 159 Copynumber: 3.9 Consensus size: 155
21970087 ACAGTAGGAT
* * * * * * *
21970097 CGACAGCACGCAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCCCTCCAGCCGGCTGA
1 CGACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTACGCATTATGCCTCTCCGGCCGGCTCA
* * * * *
21970162 GTGCCCGTATGCCCTTTTCGTGGGTT-AGCTTAGGCATA-GGAAGTTCATTCCAAGTCTAAGCCT
66 GCGCCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGG-AGTTCATTCC-AGTCTAAGCCT
* * *
21970225 AAACCGGATCGAGGGTTGTGGCAGCGGGA
128 -AGCCGGACCGAGGGTTGTGGTAGCGGGA
* * * * * * *
21970254 CTAGTAGCACGTAGAGGGGGATCGGGCCGAT-CCTCGGCTTACACATTATGCCTCTTCGGCTGGC
1 CGA-CAGCACGCAG-GGGGGACCGGGCCGATCCCT-GGCTTACGCATTATGCCTCTCCGGCCGGC
* * * * *
21970318 TCAACGCCCGCACGCTCGTTTCTTAGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAG-A
63 TCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCC
* * * * * *
21970382 TAGGATCGGGCCAAGGGTTGCGATAAC-GGA
127 TA-G-CCGGACCGAGGGTTGTGGTAGCGGGA
* * *
21970412 TCGACAGCACGCAGGGGGGACCGGGTCGATCCCCT-GCTTACG-ATTCTGCCTCTCCGGCCGGTT
1 -CGACAGCACGCAGGGGGGACCGGGCCGAT-CCCTGGCTTACGCATTATGCCTCTCCGGCCGGCT
* * * * *
21970475 GAGCACCCGTACGC-CAGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
64 CAGCGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAG-C
*
21970539 CTAGCCAGACCGA-GGTTGTGGTAGCGGGA
126 CTAGCCGGACCGAGGGTTGTGGTAGCGGGA
* * * **
21970568 CCGACAGCACGCAGAGGGGGACCAGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCTAGCT
1 -CGACAGCACGCAG-GGGGGACCGGGCCGATCCCTGGCTTACGCATTATGCCTCTCCGGCCGGCT
* * **
21970633 CAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTATAAGATT
64 CAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCCT
* *
21970698 GGACCGGACCGAAGGTTGTGG
128 AG-CCGGACCGAGGGTTGTGG
21970719 CAGCATGATC
Statistics
Matches: 364, Mismatches: 78, Indels: 44
0.75 0.16 0.09
Matches are distributed among these distances:
155 13 0.04
156 89 0.24
157 47 0.13
158 98 0.27
159 112 0.31
160 5 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (155 bp):
CGACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTACGCATTATGCCTCTCCGGCCGGCTCA
GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCCTAGC
CGGACCGAGGGTTGTGGTAGCGGGA
Found at i:21970848 original size:25 final size:26
Alignment explanation
Indices: 21970819--21970869 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21970809 TTGGCTTAGC
21970819 CATACGGA-TTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
21970844 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
21970870 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 8 0.33
26 13 0.54
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:21971209 original size:26 final size:26
Alignment explanation
Indices: 21971172--21971275 Score: 181
Period size: 26 Copynumber: 4.0 Consensus size: 26
21971162 GTTGACTTGG
*
21971172 GCATACGGAGTTCATCCCAAGTATAA
1 GCATACGGAGTTCATCCCAAGTCTAA
*
21971198 GCATACGAAGTTCATCCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
*
21971224 GCATACGGAGTTCATCGCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
21971250 GCATACGGAGTTCATCCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
21971276 TATCAGACTA
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:21971540 original size:159 final size:158
Alignment explanation
Indices: 21971250--21971754 Score: 414
Period size: 159 Copynumber: 3.2 Consensus size: 158
21971240 GCAAGTCTAA
* * * * ** * * * * *
21971250 GCATACGGAGTTCATCCCAAGTCTAA-TATCAGACTAGACCGAGGGTTGCT-GCAACAGGATCAG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACTGAGGGTTG-TAGCAGCAAGACCGG
* * * * * * *
21971313 CAGCACACAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTCCCTCTCCGACCGACTGACCG
65 CAGCACACAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAACG
*
21971378 CCCGTATGTC-CGTTTCGTGGGTTGGCTTAG
130 CCCGCA-G-CACGTTTCGTGGGTTGGCTTAG
* * * ***
21971408 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACTGAGGGTTGTAGCAGTGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACTGAGGGTTGTAGCAGCAAGACCGGC
* * * * * *
21971472 AGCACGCAGAGGGGGATCGGGCCGATCCTTGGCTTGCGCATTATGCCTCTTCGGCTGGCTCAACG
66 AGCACACAG-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAACG
* * *
21971537 CCCGCA-CACTCGTTTCGTGGGATGACTTAT
130 CCCGCAGCA--CGTTTCGTGGGTTGGCTTAG
* * * * * * ** *
21971567 GCATATGGAGTCCATTCC-TAGTCTAAG-ATCGGACCGGACTGAGGGTTGTGGTAGCAAGATTGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCGGACTGAGGGTTGTAGCAGCAAGACCGG
* * * * *
21971630 TAGCACATAGGGGGGGACCAGGCCGATCCTCGGCTTGCGCATCCTGCCTCTCCGG-TCGGCTGAG
65 CAGCACACA-GGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCT-GGCTGAA
*
21971694 CGCCCGCACGCACATTTCGTGGGTTGGCTTAG
128 CGCCCGCA-GCACGTTTCGTGGGTTGGCTTAG
*
21971726 GCATACGGAGTTCATTTCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
21971755 TATGGAGTTC
Statistics
Matches: 271, Mismatches: 62, Indels: 26
0.75 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 1 0.00
158 57 0.21
159 207 0.76
160 3 0.01
161 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACTGAGGGTTGTAGCAGCAAGACCGGC
AGCACACAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAACGC
CCGCAGCACGTTTCGTGGGTTGGCTTAG
Found at i:21971762 original size:26 final size:26
Alignment explanation
Indices: 21971726--21971804 Score: 108
Period size: 26 Copynumber: 3.0 Consensus size: 26
21971716 GTTGGCTTAG
*
21971726 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
21971752 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
21971778 GCATACGGA-TTGCATTCCCA-GTCTAA
1 GCATACGGAGTT-CATT-CCATGTCTAA
21971804 G
1 G
21971805 ATTTTGACCC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
25 2 0.04
26 43 0.90
27 3 0.06
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:21972504 original size:26 final size:26
Alignment explanation
Indices: 21972474--21972526 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21972464 GTTGAGTTAG
21972474 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21972500 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21972526 G
1 G
21972527 ATCGAAACGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21972861 original size:159 final size:158
Alignment explanation
Indices: 21972500--21972923 Score: 388
Period size: 159 Copynumber: 2.7 Consensus size: 158
21972490 CCCAGTCTAA
* * *
21972500 GCATAGGGAGTTCATTCCCAGTCTAAGATCGAAAC-GGACTGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG-AACTGGACTGAGGGTTGAGGCAGCAGGATCGAC
* * * * * *
21972564 AGCACGCAGGAGAGACCGAGCCGATCCCTGGCTTGCGCATTCTACTTCTCCGACCGGCTGAGCGC
65 AGCACGCAGGGGGGACTGGGCCGGTCCCTGGCTTGCGCATTCTACTTCTCCGACCGGCTCAGCGC
* *
21972629 CCGCACGCCCATTTCATGGGTTGGCTTAG
130 CCGCACGCCCATTTCATGGGTTGACCTAG
* * ** * * ** * * *
21972658 GCATAGGGAGTTCTTTCCTTGTATAAG-CCCTAGTCGGACTGAGGGTTGTGGCAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACT-GGACTGAGGGTTGAGGCAGCAGGATCGAC
* * *
21972722 AACACGCAGAGGGGGACTGGGGCGGTCCCTGGCTTGCGCA-T-TAGCTCTCTCCGATCGGCTCAG
65 AGCACGCAG-GGGGGACTGGGCCGGTCCCTGGCTTGCGCATTCTA-CT-TCTCCGACCGGCTCAG
* **** * *
21972785 TGCCCGCACGTTTGTTTCGTTGGTTGACCTAG
127 CGCCCGCACGCCCATTTCATGGGTTGACCTAG
* * * * * *
21972817 GCGTACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGAGGTAGTAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTGAGGCAGCAGGATCGACA
* * * *
21972882 GCACACAGGGGGGGATTGGGCCGGTCCCCGGCTTACGCATTC
66 GCACGCA-GGGGGGACTGGGCCGGTCCCTGGCTTGCGCATTC
21972924 AGCCTTTTCG
Statistics
Matches: 206, Mismatches: 51, Indels: 15
0.76 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 3 0.01
158 60 0.29
159 137 0.67
160 5 0.02
ACGTcount: A:0.19, C:0.26, G:0.33, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTGAGGCAGCAGGATCGACA
GCACGCAGGGGGGACTGGGCCGGTCCCTGGCTTGCGCATTCTACTTCTCCGACCGGCTCAGCGCC
CGCACGCCCATTTCATGGGTTGACCTAG
Found at i:21973005 original size:26 final size:26
Alignment explanation
Indices: 21972976--21973028 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21972966 GTCAATTTCG
21972976 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
* *
21973002 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21973028 G
1 G
21973029 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21973398 original size:185 final size:184
Alignment explanation
Indices: 21973071--21973607 Score: 522
Period size: 185 Copynumber: 2.8 Consensus size: 184
21973061 TCGACAGCAA
* *
21973071 GATCGACAGCACGTAGGAGGGATCGGGTCGATCCTCGGCTTGCACATTCTGCCTCTCCGGTCGGC
1 GATCGACAGCACGCAGGAGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGC
* * ** *
21973136 TGTGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAGCA
66 TGAGCACCCGCACGCTCATTTCGTGGGTCGGCTTAGGCATACAAAGTTCATTACACGTCTAAGCA
*
21973201 TACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGGGGCAGTAG
131 TACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGGGGCAGTAG
* ** * *
21973255 GATCGACAGCACGCAGGGAGGGATCGGGTCGGTCCCCGGCTTGTGCATTCTGCCTTTTCGG-CTG
1 GATCGACAGCACGCA-GGAGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTC-G
** * * *
21973319 GCTGAGTGCCCGTACGCTCCTTTCGTGGGTCGGCTTCA-GCATACAAAGTTCATTCCACGTCTAA
64 GCTGAGCACCCGCACGCTCATTTCGTGGGTCGGCTT-AGGCATACAAAGTTCATTACACGTCTAA
* * * * *
21973383 GCGTACGGGGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTACGACAGCAGGACCAGCA
128 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTT------G--GG----GCA
*
21973448 GCAG
181 GTAG
** * * * * * * *
21973452 GATCGGTAGCACGTAGGGGGGACCGGGTCGATCCTCGGATTGCATATTCTGCCTCTCCGGTCGGT
1 GATCGACAGCACGCAGGAGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGC
* * * * * ** * *
21973517 TGTA-CGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTCTAAGC
66 TG-AGCACCCGCACGCTCATTTCGTGGGTCGGCTTAGGCATACAAAGTTCATTACACGTCTAAGC
*
21973581 ATACGGTGTTCATTCCCAGTCTAAGAT
130 ATACGGAGTTCATTCCCAGTCTAAGAT
21973608 TTTGAGCCAC
Statistics
Matches: 288, Mismatches: 47, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
184 15 0.05
185 133 0.46
186 1 0.00
191 1 0.00
193 2 0.01
195 1 0.00
196 115 0.40
197 20 0.07
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (184 bp):
GATCGACAGCACGCAGGAGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGC
TGAGCACCCGCACGCTCATTTCGTGGGTCGGCTTAGGCATACAAAGTTCATTACACGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGGGGCAGTAG
Found at i:21973541 original size:381 final size:381
Alignment explanation
Indices: 21972820--21973608 Score: 1139
Period size: 381 Copynumber: 2.1 Consensus size: 381
21972810 GACCTAGGCG
* * * *
21972820 TACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGAGGTAGTAGGATTGACAGCA
1 TACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGAGGCAGTAGGATCGACAGCA
* *
21972885 CACAGGGGGGGATTGGGCCGGTCCCCGGCTTACGCATTCAGCCTTTTCGACTGGCTGAGCGCCCG
66 CACAGGGAGGGATCGGGCCGGTCCCCGGCTTACGCATTCAGCCTTTTCGACTGGCTGAGCGCCCG
* * * * * *
21972950 CATGCTCGTTTCGTGGGTCAATTTCGGCATACAGAGTTCATTCCATGTCTAAGCATACGGGGTTC
131 CACGCTCCTTTCGTGGGTCAACTTCAGCATACAAAGTTCATTCCACGTCTAAGCATACGGGGTTC
* * * * *
21973015 ATTCCCAGTCTAAGATCGGACCAGACCGAGCGTTGCGATAGTAGAATCGACAGCAAGATCGACAG
196 ATTCCCAGTCTAAGATCGGACCAAACCGAGCGTTACGACAGCAGAACCGACAGCAAGATCGACAG
* * *
21973080 CACGTAGGAGGGATCGGGTCGATCCTCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGTGCACCC
261 CACGTAGGAGGGACCGGGTCGATCCTCGGATTGCACATTCTGCCTCTCCGGTCGGCTGTACACCC
*
21973145 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAGCA
326 GCACGCTCATTTCGTGGGTTGGCTTAGGCACACGGAGTTCATTACATGTCTAAGCA
*
21973201 TACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGGGGCAGTAGGATCGACAGCA
1 TACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGAGGCAGTAGGATCGACAGCA
* * ** * * *
21973266 CGCAGGGAGGGATCGGGTCGGTCCCCGGCTTGTGCATTCTGCCTTTTCGGCTGGCTGAGTGCCCG
66 CACAGGGAGGGATCGGGCCGGTCCCCGGCTTACGCATTCAGCCTTTTCGACTGGCTGAGCGCCCG
* ** *
21973331 TACGCTCCTTTCGTGGGTCGGCTTCAGCATACAAAGTTCATTCCACGTCTAAGCGTACGGGGTTC
131 CACGCTCCTTTCGTGGGTCAACTTCAGCATACAAAGTTCATTCCACGTCTAAGCATACGGGGTTC
* * * * **
21973396 ATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTACGACAGCAGGACC-AGCAGCAGGATCGGTA
196 ATTCCCAGTCTAAGATCGGACCAAACCGAGCGTTACGACAGCAGAACCGA-CAGCAAGATCGACA
* * * *
21973460 GCACGTAGGGGGGACCGGGTCGATCCTCGGATTGCATATTCTGCCTCTCCGGTCGGTTGTACGCC
260 GCACGTAGGAGGGACCGGGTCGATCCTCGGATTGCACATTCTGCCTCTCCGGTCGGCTGTACACC
* * *
21973525 CGTACGCTCGTTTCGTGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTCTAAGCA
325 CGCACGCTCATTTCGTGGGTTGGCTTAGGCACACGGAGTTCATTACATGTCTAAGCA
*
21973582 TACGGTGTTCATTCCCAGTCTAAGATT
1 TACGGAGTTCATTCCCAGTCTAAGATT
21973609 TTGAGCCACG
Statistics
Matches: 360, Mismatches: 47, Indels: 2
0.88 0.11 0.00
Matches are distributed among these distances:
380 1 0.00
381 359 1.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (381 bp):
TACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGAGGCAGTAGGATCGACAGCA
CACAGGGAGGGATCGGGCCGGTCCCCGGCTTACGCATTCAGCCTTTTCGACTGGCTGAGCGCCCG
CACGCTCCTTTCGTGGGTCAACTTCAGCATACAAAGTTCATTCCACGTCTAAGCATACGGGGTTC
ATTCCCAGTCTAAGATCGGACCAAACCGAGCGTTACGACAGCAGAACCGACAGCAAGATCGACAG
CACGTAGGAGGGACCGGGTCGATCCTCGGATTGCACATTCTGCCTCTCCGGTCGGCTGTACACCC
GCACGCTCATTTCGTGGGTTGGCTTAGGCACACGGAGTTCATTACATGTCTAAGCA
Found at i:21974308 original size:26 final size:26
Alignment explanation
Indices: 21974272--21974324 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21974262 GTTGACTTAG
21974272 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATATGGAGTTCATTCCC-AGTCTAA
21974298 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
21974324 G
1 G
21974325 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:21974771 original size:157 final size:155
Alignment explanation
Indices: 21974298--21974789 Score: 504
Period size: 159 Copynumber: 3.1 Consensus size: 155
21974288 CCTAGTCTAA
* ** * * * *
21974298 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGGCAGCAAGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGAACGGATTGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * *
21974363 GCACGTAAGGGGGACCGGGCCGATCCCCTGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGCC
66 GCACGT-AGGGGGACCGGG-CGAT-CCCTGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
* *
21974428 CGCACG-TCCGTTTCATAGGTTGGCTTAG
128 CGCACGCT-CATTTCATGGGTTGGCTTAG
* * ** * * * *
21974456 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCGGACCGAGGGTTGTGGTAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGAACGGA-TTGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * * * * *
21974519 TAGCATGAAGAGGGGGATCGGGTCGATCCTCGGGTTGCACATTATGCCTCTCCGGCCGGCTCAGC
64 CAGCACG--TAGGGGGACCGGG-CGATCC-CTGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC
* ** *
21974584 GGCCGCACGCTCATTTTGTGGGTTGACTTAG
125 GCCCGCACGCTCATTTCATGGGTTGGCTTAG
* *
21974615 GCAAACGGAGTTCATTCCCAGTCTAAGAACGGATTGGACCGAGGGTTGTGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGAACGGATTGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * *
21974680 GCACGTAGGGGGACCGGGCAGGTCCCTAGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGTGCCC
66 GCACGTAGGGGGACCGGGC-GATCCCT-GCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCC
21974745 GCACGCTCATTTCATGGGTTGGCTTAG
129 GCACGCTCATTTCATGGGTTGGCTTAG
21974772 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
21974790 ATGTGTAAGC
Statistics
Matches: 264, Mismatches: 60, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
156 2 0.01
157 89 0.34
158 51 0.19
159 116 0.44
160 6 0.02
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGAACGGATTGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGTAGGGGGACCGGGCGATCCCTGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGC
ACGCTCATTTCATGGGTTGGCTTAG
Found at i:21974824 original size:26 final size:26
Alignment explanation
Indices: 21974772--21974824 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21974762 GTTGGCTTAG
* *
21974772 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACAGAGTTCATTCCATGTCTAA
21974798 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
21974824 G
1 G
21974825 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:21974938 original size:185 final size:183
Alignment explanation
Indices: 21974622--21975011 Score: 492
Period size: 185 Copynumber: 2.1 Consensus size: 183
21974612 TAGGCAAACG
* * ** * * *
21974622 GAGTTCATTCCCAGTCTAAGAACGGATTGGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * * ** * **
21974687 GGGGGACCGGGCAGGTCCCTAGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGTGCCCGCACGCT
66 GGGGGACCGGGCAGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCT
* * * *
21974752 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTGTAAGCATACA
131 CATTTCATGGGTTGGCTTAGCCATACGAAATTCATTCCATGTCTAAGCATACA
* * * **
21974805 GAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCGGTAGCAGGATTGGTAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* *
21974870 GGGGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGTACG
66 --GGGGGACCGGGCAGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACG
* * * *
21974935 CTCATTTCGTGGGTTGGCTTTGCCATACGAAATTGATTCCATGTCTAAGCATACG
129 CTCATTTCATGGGTTGGCTTAGCCATACGAAATTCATTCCATGTCTAAGCATACA
21974990 GAGTTCATTCCCAGTCTAAGAT
1 GAGTTCATTCCCAGTCTAAGAT
21975012 TTTGAGCCAC
Statistics
Matches: 175, Mismatches: 30, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
183 53 0.30
185 122 0.70
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (183 bp):
GAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
GGGGGACCGGGCAGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCT
CATTTCATGGGTTGGCTTAGCCATACGAAATTCATTCCATGTCTAAGCATACA
Found at i:21975713 original size:26 final size:26
Alignment explanation
Indices: 21975663--21975715 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21975653 GTTGACTTAG
* *
21975663 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAATCTAA
21975689 GCATACGAAGTTCATTCCC-AATCTAA
1 GCATACGAAGTTCA-TCCCTAATCTAA
21975715 G
1 G
21975716 ATTGAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAATCTAA
Found at i:21976055 original size:159 final size:157
Alignment explanation
Indices: 21975689--21976103 Score: 413
Period size: 159 Copynumber: 2.6 Consensus size: 157
21975679 CCTAGTCTAA
* * * ** * * *
21975689 GCATACGAAGTTCATTCCCAATCTAAGATTGAATCGGACTGAGGGTTACGACAGCAGGATCTGTA
1 GCATATGAAGTTCATTCCCAATCTAAGATCGAACCGGAC-GAGGGTTGTGGCAGCAGGATCGGCA
* * *
21975754 GCACGCAGGGGAGACCGGGCCGATCCCCGGCTTGCACATTCCGCCTCTCCGGCCGGCTGAGCGCC
65 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTACGCCTCTCCGGCCGGCTCAGCGCC
* *
21975819 CGCACGGCCGTTTCGTGGGTTGGCTTAG
130 CGCACGGCCGTTTCATGGGTTGACTTAG
* * ** * * * ** * *
21975847 GCAT-TGGGAGTTCATT-CCATCTCTAAGCCCCAGCCAGACCTCGGGTTGTGGTAGCGGGATCGG
1 GCATAT-GAAGTTCATTCCCA-ATCTAAGATCGAACCGGA-CGAGGGTTGTGGCAGCAGGATCGG
* * *
21975910 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGTACATTATGCCTCTCCGGCTGGCTCAGC
63 CAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCACATTACGCCTCTCCGGCCGGCTCAGC
*
21975975 GTCCGCAC-GCACGTTTCATGGGTTGACTTAG
127 GCCCGCACGGC-CGTTTCATGGGTTGACTTAG
* * * * *
21976006 GCATATGAAGTTTATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGTGGCCGCAGGATTGACA
1 GCATATGAAGTTCATTCCCAATCTAAGATCGAACCGGA-CGAGGGTTGTGGCAGCAGGATCGGCA
** * *
21976071 GCACATAGGGGGGACCAGGCCAATCCCCGGCTT
65 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTT
21976104 ACGCATTCTA
Statistics
Matches: 202, Mismatches: 48, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 72 0.36
159 123 0.61
160 4 0.02
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (157 bp):
GCATATGAAGTTCATTCCCAATCTAAGATCGAACCGGACGAGGGTTGTGGCAGCAGGATCGGCAG
CACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTACGCCTCTCCGGCCGGCTCAGCGCCC
GCACGGCCGTTTCATGGGTTGACTTAG
Found at i:21976921 original size:159 final size:159
Alignment explanation
Indices: 21976514--21977114 Score: 432
Period size: 159 Copynumber: 3.8 Consensus size: 159
21976504 GGTGTGGGAC
* * * * * *
21976514 CGACAGGACGCAGAGGAGGA-CAAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTC
1 CGACAGCATGCAGAGGGGGACCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGGCTC
** * * *
21976578 AGCACCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCA
66 AGTGCCCGCACGCTCGTTTAGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGACCA
*
21976643 GACTGGACCTAGGGTTATAGCAGCAGGAT
131 GACTAGACCTAGGGTTATAGCAGCAGGAT
* * * * * * *
21976672 CGATAGCATGCAGTGGGGGACCGAGTCGATCCCCGGCTTGTGCATTCTGCATCTCCGACCGGCTG
1 CGACAGCATGCAGAGGGGGACCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGGCTC
* * * * * * * * * *
21976737 AGTGCCTGTACGCCCGTTTAATGGGTTGGCGTAGGCATAGGGAGTTCATT-CTAAGTTTAAGCCC
66 AGTGCCCGCACGCTCGTTTAGTGGGTTGACTTAGGCATACGAAGTTCATTCCT-AGTCTAAGACC
* * * * **
21976801 TAG-CTAGA-CTGGGGATTGTGGTAGTGGGAT
130 -AGACTAGACCTAGGG-TTATAGCAGCAGGAT
* *
21976831 CGACAGC-T-CAGAGAAGGGGGCCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGGC
1 CGACAGCATGCAGAG--GGGGACCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGGC
* * * *
21976894 TCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC-ATAGTTCATTCCCAGTCAAAGA
64 TCAGTGCCCGCACGCTCGTTTAGTGGGTTGACTTAGGCATACGA-AGTTCATTCCTAGTCTAAGA
* * * * * ** * **
21976958 TCGGAC-CGAATCGAGGGTTGCAGTATTAGGAT
128 CCAGACTAG-ACCTAGGGTTATAGCAGCAGGAT
** * * * * ** * * * *
21976990 CGACAGCATATAG-GGGGGACCGGGTCAATCCCTGGCTTACGCATTCTGCCTCTCCGCCCGACTG
1 CGACAGCATGCAGAGGGGGACCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGGCTC
* * * * *
21977054 AGCGCCCGCACGCTCGTTTCA-AGGGTTGGCTTAGGCATATGGAGTTCATTCC-ATGTCTAAG
66 AGTGCCCGCACGCTCGTTT-AGTGGGTTGACTTAGGCATACGAAGTTCATTCCTA-GTCTAAG
21977115 CATACGGAGT
Statistics
Matches: 341, Mismatches: 86, Indels: 32
0.74 0.19 0.07
Matches are distributed among these distances:
157 5 0.01
158 114 0.33
159 211 0.62
160 9 0.03
161 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
CGACAGCATGCAGAGGGGGACCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGGCTC
AGTGCCCGCACGCTCGTTTAGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGACCA
GACTAGACCTAGGGTTATAGCAGCAGGAT
Found at i:21977117 original size:26 final size:26
Alignment explanation
Indices: 21977088--21977140 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21977078 GTTGGCTTAG
*
21977088 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTACC-TGTCTAA
21977114 GCATACGGAGTTCATTACCTGTCTAA
1 GCATACGGAGTTCATTACCTGTCTAA
21977140 G
1 G
21977141 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCTGTCTAA
Found at i:21977508 original size:26 final size:26
Alignment explanation
Indices: 21977472--21977521 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
21977462 CACTTAGGCG
21977472 TACGGAGTTCA-TCCCTAGTCTAAGCA
1 TACGGAGTTCATTCCC-AGTCTAAGCA
21977498 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
21977522 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:21977969 original size:158 final size:157
Alignment explanation
Indices: 21977495--21977996 Score: 560
Period size: 158 Copynumber: 3.2 Consensus size: 157
21977485 CCTAGTCTAA
** * * * * * * *
21977495 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGAACCGAGTGTTGCGACAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAATCGGACAGAGGGTTGTGGCAGCAAGATCGAC
* * * ** * * *
21977559 AGCACGCAGGGGGGACCGTGTCGATCCTCGGCTTGCGCATTTTGCCTCTCCGATCAGTTGAGCAC
65 AGCACGCA-GGGGGACCGGGTCGATCCCCGACTTGCGCATTTTGCCTCTCCGGCCGGCTAAGCAC
* *
21977624 CCGCACGCCCATTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
21977653 GCATAGGGAGTTCATTCCATGTCTAAG-CCTTAGTCGGACAGAGGGTTGTGGCAGCGAGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATC-AAATCGGACAGAGGGTTGTGGCAGCAAGATCGAC
* * * * * * *
21977717 AGCATGCAGAGGTGGACTGGGTCGATCCCCGTCTTGCGTATTATGCCTCTTCGGCCGGCTCAGCA
65 AGCACGCAG-GG-GGACCGGGTCGATCCCCGACTTGCGCATTTTGCCTCTCCGGCCGGCTAAGCA
*
21977782 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
21977812 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCGGATAGAGGGTTGTGGCAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAATCGGACAGAGGGTTGTGGCAGCAAGATCGAC
* *
21977876 AGCACGCATGGGGGACCGGGCCGATCCCCGACTTACGCATTTTGCCTCTCCGGCCGGCTAAGCAC
65 AGCACGCA-GGGGGACCGGGTCGATCCCCGACTTGCGCATTTTGCCTCTCCGGCCGGCTAAGCAC
* *
21977941 CCGCATGCTCGTTTTGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
21977970 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
21977997 CGTACAGAGT
Statistics
Matches: 285, Mismatches: 51, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
157 8 0.03
158 146 0.51
159 126 0.44
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAATCGGACAGAGGGTTGTGGCAGCAAGATCGACA
GCACGCAGGGGGACCGGGTCGATCCCCGACTTGCGCATTTTGCCTCTCCGGCCGGCTAAGCACCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:21978009 original size:26 final size:26
Alignment explanation
Indices: 21977973--21978022 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
21977963 GGCTTAGGCA
21977973 TACAGAGTTCATTCC-ATGTCTAAGCG
1 TACAGAGTTCATTCCTA-GTCTAAGCG
21977999 TACAGAGTTCATTCCTAGTCTAAG
1 TACAGAGTTCATTCCTAGTCTAAG
21978023 ATCAAACCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (26 bp):
TACAGAGTTCATTCCTAGTCTAAGCG
Found at i:21978389 original size:882 final size:879
Alignment explanation
Indices: 21976612--21978904 Score: 2584
Period size: 882 Copynumber: 2.6 Consensus size: 879
21976602 GTTGACTTAG
* * * * **
21976612 GCATACGAAGTTCATTCCTAGTCTAAGATCAGA-CTGGACCTAGGGTT-ATAGCAGCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-AGACCAAGGGTTGCGA-CAGCAGGATCGA
* * * * * *
21976675 TAGCATGCAGTGGGGGACCGAGTCGATCCCCGGCTTGTGCATTCTGCATCTCCGACCGGCTGAGT
64 TAGCACGCAG-GGGGGACCGAGTCGATCCCCGGCTTGCGCATTTTGCCTCTCCGATCGGCTGAGC
* * * * * * * * *
21976740 GCCTGTACGCCCGTTTAATGGGTTGGCGTAGGCATAGGGAGTTCATTCTAAGTTTAAGCCCTAGC
128 GCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTTAGC
* * * * * * *
21976805 TAGACTG-GGGATTGTGGTAGTGGGATCGACAGC-T-CAGAGAAGGGGGCCGGGCCGATCCCCGG
193 -AGACTGAGGG-TTGTGGCAGCGAGACCGACAGCATGCAGAG--GGGGACTGGGTCGATCCCCGG
* * * *
21976867 CTTGTGCATTATGCCTCTCCGGCCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
254 CTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
** * * * * * **
21976932 ATACATAGTTCATTCCCAGTCAAAGATCGGACCGAATCGAGGGTTGCAGTATTAGGATCGACAGC
319 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTGCGGTAGCAGGATCGACAGC
** * * * * * *
21976997 ATATAGGGGGGACCGGGTCAATCCCTGGCTTACGCATTCTGCCTCTCCGCCCGACTGAGCGCCCG
384 ACGTA-GGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCG
** *
21977062 CACGCTCGTTTCAAGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTC
448 CACGCTCGTTTCGTGGGTTGGCTTAGGCATA-CGAGTTCATTCCATGTCTAAGCATACGGAGTTC
*** * ** **
21977127 ATTACCT-GTCTAAGATTGGACCGGAGTAAGGGTTCCGACAGTAAGACCAGCAACAGGATCGGTA
512 ATT-CCTAGTCTAAGATCAAACCAGAGTAAGGGTTCCGACAACAAGACCAGCAACAGGATCGACA
* * ** * * *
21977191 GCATACAGGGGGTGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGATTGAGCAC
576 GCACACAGGGGGTGACCAAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCAC
* * *
21977256 TCGCACGCTCGTTTCATGAGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCA
641 CCGCACGCTCGTTTCATGAGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * * *
21977321 GATCGAGGGTTGTGACAGCAGGACCGATAGCGAGATCGGCAGCACACAAAGGGAGATCGGGCTGA
706 GATCGAGAGTTATGACAGCAGGACAGACAACGAGATCGGCAGCACACAAAGGGAGATCGAGCTGA
* * * *
21977386 TCCCCGGCTTATGCATTATTCCTCTCCGATCGGCCTCTCCAGCAGACTGAACGCTCGCACACTCA
771 TCCCCGGCTTACGCATTATGCCTCTCCGACCGGCCTCTCCAGCAGACTGAACACTCGCACACTCA
* * *
21977451 TTTCGTGGGTTCACTTAGGCGTACGGAGTTCATCCCTAGTCTAA
836 TTTCGTGGGTTCACTTAGGCATACAGAGTTCATCCCCAGTCTAA
* * *
21977495 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GAACCGAGTGTTGCGACAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAG-ACCAAGGGTTGCGACAGCAGGATCGAT
* * * * *
21977559 AGCACGCAGGGGGGACCGTGTCGATCCTCGGCTTGCGCATTTTGCCTCTCCGATCAGTTGAGCAC
65 AGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTTTGCCTCTCCGATCGGCTGAGCGC
* *
21977624 CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTTAGTCG
130 CCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTTAG-CA
* * *
21977689 GACAGAGGGTTGTGGCAGCGAGACCGACAGCATGCAGAGGTGGACTGGGTCGATCCCCGTCTTGC
194 GACTGAGGGTTGTGGCAGCGAGACCGACAGCATGCAGAGGGGGACTGGGTCGATCCCCGGCTTGC
* *
21977754 GTATTATGCCTCTTCGGCCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
259 GCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * *
21977819 GAGTTCATTCCCAGTCTAAGATCAAACCGGATAGAGGGTTGTGGCAGCAAGATCGACAGCACGCA
324 GAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTGCGGTAGCAGGATCGACAGCACGTA
* * * *
21977884 TGGGGGACCGGGCCGATCCCCGACTTACGCATTTTGCCTCTCCGGCCGGCTAAGCACCCGCATGC
389 -GGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGC
* * *
21977949 TCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCGTACAGAGTTCATTCC
453 TCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
* * ** * * *
21978014 TAGTCTAAGATCAAACCAGA-TCGAGGGTTGCGGTAACAGGACCAGCAGCAGGATCGACAGCACG
517 TAGTCTAAGATCAAACCAGAGT-AAGGGTTCCGACAACAAGACCAGCAACAGGATCGACAGCACA
* * * **
21978078 CAGGGGG-GAACCAAGTGGATCCCCGGCTTGCGCATTCTGCTTCTCCGGCC-AGCTGAGTGCCCG
581 CAGGGGGTG-ACCAAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGA-CTGAGCACCCG
* * *
21978141 CACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCGTTCCATGTCTAAGCCCCAGCTAGA-
644 CACGCTCGTTTCATGAGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGAT
* * * * * * ***
21978205 CGGAGAGTTATGGCAGTAGGATAGGCAACGGGATCGGTAGCATGTAGAAGGG-GATCGAGCTGAT
709 C-GAGAGTTATGACAGCAGGACAGACAACGAGATCGGCAGCACACA-AAGGGAGATCGAGCTGAT
* * * * * *
21978269 CCTCGGCTTACGCATTATGCCTCTTCGGCCGGCCTCTCCAGCCGACTGAGCACTCGCACGCTCAT
772 CCCCGGCTTACGCATTATGCCTCTCCGACCGGCCTCTCCAGCAGACTGAACACTCGCACACTCAT
*
21978334 TTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
837 TTCGTGGGTTCACTTAGGCATACAGAGTTCATCCCCAGTCTAA
* *
21978377 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGACAGCAGGATCGATA
* * * * * * * * * *
21978442 GCACGTAAGGGGGACCGGGCCGATCCCCAGCTTGCACATTTTGTCTTTCCGGTCGGCTGAGCGGC
66 GCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTTTGCCTCTCCGATCGGCTGAGCGCC
* * * ** *
21978507 CGCACGCCCATTTCCTGGGTTTGCTTAGGCATAGGGAGTTCATTCCATGTGTAAGCTCCAACCAG
131 CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC-CTTAGCAG
* * * * * *
21978572 ATTGAGGGTTGTGGCAGCGAGACAGGCAGCACGTAGAGGGGGACTGGGTCGATCCCCGGCTTACG
195 ACTGAGGGTTGTGGCAGCGAGACCGACAGCATGCAGAGGGGGACTGGGTCGATCCCCGGCTTGCG
* * * * ** * *
21978637 CATTATGGCTCTTCGGTCGGCTCAGCGCACGCATGCTCGTTTCGTGATTTAACTTATGCATACGG
260 CATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * * *
21978702 AGTTCATTCCCAGTGTAAGATCAGATCAGACCA-A-GGTTGCGATAGCAGGATCAACAGCACGTA
325 AGTTCATTCCCAGTCTAAGATCAGACCGGA-TAGAGGGTTGCGGTAGCAGGATCGACAGCACGTA
* * * * * *
21978765 GGGGGATCAGGTCGATCCCC-AGCTTGCGTATTCTGCCTCTCCGGCCGGCTGAGCACCTGCACAC
389 GGGGGACCGGGTCGATCCCCGA-CTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGC
*
21978829 CCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATT-C
453 TCGTTTCGTGGGTTGGCTTAGGCATACG-AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
21978893 TCAGTCTAAGAT
517 T-AGTCTAAGAT
21978905 TTTGATCCAC
Statistics
Matches: 1180, Mismatches: 210, Indels: 43
0.82 0.15 0.03
Matches are distributed among these distances:
879 4 0.00
880 119 0.10
881 30 0.03
882 947 0.80
883 73 0.06
884 7 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (879 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGACAGCAGGATCGATA
GCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTTTGCCTCTCCGATCGGCTGAGCGCC
CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTTAGCAGA
CTGAGGGTTGTGGCAGCGAGACCGACAGCATGCAGAGGGGGACTGGGTCGATCCCCGGCTTGCGC
ATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGG
GGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCG
TTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGT
CTAAGATCAAACCAGAGTAAGGGTTCCGACAACAAGACCAGCAACAGGATCGACAGCACACAGGG
GGTGACCAAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTC
GTTTCATGAGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGAGT
TATGACAGCAGGACAGACAACGAGATCGGCAGCACACAAAGGGAGATCGAGCTGATCCCCGGCTT
ACGCATTATGCCTCTCCGACCGGCCTCTCCAGCAGACTGAACACTCGCACACTCATTTCGTGGGT
TCACTTAGGCATACAGAGTTCATCCCCAGTCTAA
Found at i:21978887 original size:26 final size:26
Alignment explanation
Indices: 21978850--21978902 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21978840 GTTGGCTTAG
21978850 GCATACGAAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCTCA-GTCTAA
*
21978876 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
21978902 G
1 G
21978903 ATTTTGATCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:21979624 original size:26 final size:26
Alignment explanation
Indices: 21979574--21979626 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21979564 GTTGACTTAG
* *
21979574 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
21979600 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
21979626 G
1 G
21979627 ATCGTACTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:21979787 original size:26 final size:26
Alignment explanation
Indices: 21979758--21979810 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21979748 GTTGACTTAG
21979758 GCATACGGAGTTAATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
* *
21979784 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
21979810 G
1 G
21979811 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:21980147 original size:159 final size:157
Alignment explanation
Indices: 21979994--21980285 Score: 363
Period size: 157 Copynumber: 1.8 Consensus size: 157
21979984 AGGGTTGTGG
* * * * *
21979994 CAGCGGGACCGGCAGCATGCAGAGGGGGATCGGGCC-GATCCCCAACTTGCGCATTATGCCTCTC
1 CAGCAGGACCGACAGCACGCAG-GGGGGATCGAGCCAG-TCCCCAACTTACGCATTATGCCTCTC
* * * *
21980058 CGACCAGCTCAGTGCCCTCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-
64 CGACCAGCTCAGCG-CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATT-CCAT
21980122 GTCTAAGATCGGACCAGACTGAGGGTTACGA
127 GTCTAAGATCGGACCAGACTGAGGGTTACGA
* * * * *
21980153 CAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCAGTGCCCGACTTACGCATTCTGCCTCTTCG
1 CAGCAGGACCGACAGCACGCAGGGGGGATCGAGCCAGTCCCCAACTTACGCATTATGCCTCTCCG
* * * * *
21980218 ATCGGCTGAGCGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
66 ACCAGCTCAGCGCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCT
21980283 AAG
131 AAG
21980286 CATACGGAGT
Statistics
Matches: 112, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
156 3 0.03
157 47 0.42
158 43 0.38
159 19 0.17
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (157 bp):
CAGCAGGACCGACAGCACGCAGGGGGGATCGAGCCAGTCCCCAACTTACGCATTATGCCTCTCCG
ACCAGCTCAGCGCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCT
AAGATCGGACCAGACTGAGGGTTACGA
Found at i:21980296 original size:26 final size:26
Alignment explanation
Indices: 21980259--21980311 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21980249 GTTGGCTTAG
21980259 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
21980285 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21980311 G
1 G
21980312 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21981276 original size:26 final size:26
Alignment explanation
Indices: 21981246--21981298 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21981236 GTTGACTTAG
21981246 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
21981272 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21981298 G
1 G
21981299 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21981955 original size:26 final size:26
Alignment explanation
Indices: 21981919--21981970 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21981909 TTGACTTAGT
21981919 CATACGGAGTTCA-TCCCTAGTCTAAG
1 CATACGGAGTTCATTCCC-AGTCTAAG
*
21981945 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
21981971 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:21982315 original size:26 final size:26
Alignment explanation
Indices: 21982286--21982338 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21982276 GTTGACTTTG
21982286 GCATAAGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
* *
21982312 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
21982338 G
1 G
21982339 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:21982479 original size:218 final size:218
Alignment explanation
Indices: 21982209--21982642 Score: 627
Period size: 218 Copynumber: 2.0 Consensus size: 218
21982199 TTGATCCTCA
** * * **
21982209 GCTTGCGCATTATGCCTCTCCGGCCGGCCTCTCCAGTCGACTGAGTGCCCGCATGCTCATTTTGT
1 GCTTGCGCATTATGCCTCTCCAACCGGCCTCTCCAGTCGACTGAGCGCCCGCACGCTCATTTCAT
* * *
21982274 GGGTTGACTTTGGCATAAGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
66 GGGCTGACTTCGACATAAGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
21982339 ATCGAATCAGACTGAAGGTTGCGGTAGCAGGATTGGCAGCACCCAGGGGGA-TCGGACCGATCCT
131 ATCGAATCAGACTGAAGGTTACAGCAGCAGGATCGACAGCACCCAGGGGGACT-GGACCGATCCT
* *
21982403 CGGTTTATGCATTCTGCCTCTCTG
195 CGGCTTACGCATTCTGCCTCTCTG
* * **
21982427 GCTTGCGCATTATGCCTCTCCAACCGGCCTTTCCAGTCGGCTGAGCGCCCGCACGCTTGTTTCAT
1 GCTTGCGCATTATGCCTCTCCAACCGGCCTCTCCAGTCGACTGAGCGCCCGCACGCTCATTTCAT
* *
21982492 GGGCTGACTTCGACATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAG
66 GGGCTGACTTCGACATAAGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
*
21982557 ATCGAATCGGACTGAAGGTTACAGCAGCAGGATCGACAGCACCCAGGGGGACTGGACCGATCCTC
131 ATCGAATCAGACTGAAGGTTACAGCAGCAGGATCGACAGCACCCAGGGGGACTGGACCGATCCTC
* *
21982622 GGCTTGCGCATTTTGCCTCTC
196 GGCTTACGCATTCTGCCTCTC
21982643 CGGCCGGTTG
Statistics
Matches: 190, Mismatches: 25, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
218 189 0.99
219 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.26, T:0.25
Consensus pattern (218 bp):
GCTTGCGCATTATGCCTCTCCAACCGGCCTCTCCAGTCGACTGAGCGCCCGCACGCTCATTTCAT
GGGCTGACTTCGACATAAGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
ATCGAATCAGACTGAAGGTTACAGCAGCAGGATCGACAGCACCCAGGGGGACTGGACCGATCCTC
GGCTTACGCATTCTGCCTCTCTG
Found at i:21982539 original size:26 final size:26
Alignment explanation
Indices: 21982505--21982556 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21982495 CTGACTTCGA
21982505 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
* *
21982531 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
21982557 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:21983839 original size:26 final size:26
Alignment explanation
Indices: 21983809--21983861 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21983799 GTTGGCTTAG
21983809 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21983835 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21983861 G
1 G
21983862 AGTTTGAGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21984567 original size:26 final size:26
Alignment explanation
Indices: 21984531--21984583 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21984521 GTTGACTTAG
*
21984531 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
*
21984557 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
21984583 G
1 G
21984584 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:21984599 original size:13 final size:13
Alignment explanation
Indices: 21984581--21984607 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
21984571 TACCCAGTCT
21984581 AAGATCAGACCGG
1 AAGATCAGACCGG
21984594 AAGATCAGACCGG
1 AAGATCAGACCGG
21984607 A
1 A
21984608 TCGAGGGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.22, G:0.30, T:0.07
Consensus pattern (13 bp):
AAGATCAGACCGG
Found at i:21984913 original size:184 final size:184
Alignment explanation
Indices: 21984594--21984939 Score: 464
Period size: 184 Copynumber: 1.9 Consensus size: 184
21984584 ATCAGACCGG
* * *
21984594 AAGATCAGACCGGATCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAGGGGTGACCGAGCCGAT
1 AAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGTGACCGAGCCGAT
** * * *
21984659 CCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCATGGGCTGAC
66 CCCCAGCTTGCGCATTCTACCTCTCCAACCGGCTGAGCGCCCGCACGCCCATTTCATGGGCTGAC
21984724 TTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATATGGAGTTTATTATCAGTCT
131 TTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATATGGAGTTTATTATCAGTCT
* * * * *
21984778 AAGATCGGACCGGACCGAGTGTTGCGGCAGTAGGATC-AGTAGCACGCAAGGGG-GATCGAGTCG
1 AAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGA-CAGCACGC-AGGGGTGACCGAGCCG
* * * *
21984841 ATCCCCAGCTTGCGCATTCTACCTCTCCAACTGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTG
64 ATCCCCAGCTTGCGCATTCTACCTCTCCAACCGGCTGAGCGCCCGCACGCCCATTTCATGGGCTG
* * *
21984906 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
129 ACTTAGGCATACGGAGTTCATCCCATGTCTAAGC
21984940 CCCAGCCAGA
Statistics
Matches: 139, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
183 4 0.03
184 130 0.94
185 5 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (184 bp):
AAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGTGACCGAGCCGAT
CCCCAGCTTGCGCATTCTACCTCTCCAACCGGCTGAGCGCCCGCACGCCCATTTCATGGGCTGAC
TTAGGCATACGGAGTTCATCCCATGTCTAAGCATATGGAGTTTATTATCAGTCT
Done.