Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 213 of 402
Found at i:21985223 original size:158 final size:157
Alignment explanation
Indices: 21984754--21985729 Score: 695
Period size: 158 Copynumber: 6.2 Consensus size: 157
21984744 CCCAGTCTAA
* * ** * * * * *
21984754 GCATATGGAGTTTATTATCAGTCTAAGATCGGACCGGACCGAGTGTTGCGGCAGTAGGATC-AGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGA-C
* * * * * *
21984818 AGCACGCAAGGGGGATCGAGTCGATCCCCAGCTTGCGCATTCTACCTCTCCAACTGGCTGAGCGC
65 AGCACGC-AGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACAGGCTGAGCAC
* * *
21984883 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CCGTACGCTCGTTTCGTGGGTTGACTTAG
* ** * * * ** *
21984912 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACTGAAGGTTGTGGCAGTGGGA-CTA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGA
* * * ** * ** * * *
21984974 GCAGCACGTAGAGGGGGACCGAGCCGAT-CCCTGACTTATGCATTATGGCTCTCCGGCCGGCTCA
64 -CAGCACG--CAGGGGGACCGGGCCGATCCCCAG-CTTGCGCATTCTACCTCTCCGACAGGCTGA
* * * * * *
21985038 ACGCCCGAATGCTCGTGTCGTGGGTTGACTTTG
125 GCACCCGTACGCTCGTTTCGTGGGTTGACTTAG
** ** * *
21985071 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGA-TCGAGGGTTTTGGTAGCAGGATCAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGGATCGAC
* * *** * * * *
21985135 AGCACGCAGGAGGGACCGGGTCGGTCCTTGGCTTGCGCATTTTACCTCTCTGGCCGGCTGAGCAC
65 AGCACGCAGG-GGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACAGGCTGAGCAC
21985200 CCGTACGCTCGTTTCGTGGGTTGACTTAG
129 CCGTACGCTCGTTTCGTGGGTTGACTTAG
* * * *
21985229 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAATCGGACTGAGGGTTACGGCAACAGGATCTAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * * * *
21985293 AGCATGCAGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCC
65 AGCACGCAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACAGGCTGAGCACC
* *
21985358 CGTAAGCCCGTTTCGTGGGTT-AGCTTAG
130 CGTACGCTCGTTTCGTGGGTTGA-CTTAG
* ** * * * * *
21985386 GCATA-GGTAGTTCATT-CCATGTCTATGCCCCAG-CCGAACCGAGGGTTGTGGCAG-TGAGACC
1 GCATACGG-AGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGCGGCAGCAG-GATC
* * * * * * * *
21985447 GATAGCACGCAGAGGGGGACCGGGTCGATCCCTAGCTTGTGCATTTTGCCTCTCCGATAGGCTCA
62 GACAGCACGC--AGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACAGGCTGA
** * *
21985512 GTGCCTGAACGCTCGTTTCGTGGGTTGACTTAG
125 GCACCCGTACGCTCGTTTCGTGGGTTGACTTAG
* * * *
21985545 GCATACGGAGTTCATTCCCAATCTAAGAACGGACCGGACTGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
* * * * ** *
21985610 GCACGTAGGGGGTACTGGGCC-AGTCCCC-GACTTTCACATTCTACCTCTTTGGCAGGCTGAGCA
66 GCACGCAGGGGG-ACCGGGCCGA-TCCCCAG-CTTGCGCATTCTACCTCTCCGACAGGCTGAGCA
* * * *
21985673 CCCGCACACTCGTTTTGTGGGTTGGCTTAG
128 CCCGTACGCTCGTTTCGTGGGTTGACTTAG
21985703 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
21985730 CATATGGAAT
Statistics
Matches: 639, Mismatches: 148, Indels: 62
0.75 0.17 0.07
Matches are distributed among these distances:
156 7 0.01
157 129 0.20
158 262 0.41
159 229 0.36
160 12 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACAGGCTGAGCACCC
GTACGCTCGTTTCGTGGGTTGACTTAG
Found at i:21985713 original size:474 final size:474
Alignment explanation
Indices: 21984839--21985729 Score: 1191
Period size: 474 Copynumber: 1.9 Consensus size: 474
21984829 GGGATCGAGT
* * *
21984839 CGATCCCCAGCTTGCGCATTCTACCTCTCCAACTGGCTGAGCGCCCGCACGCCCGTTTCGTGGGT
1 CGATCCCCAGCTTGCGCATTCTACCTCTCCAACCGACTGAGCGCCCGCAAGCCCGTTTCGTGGGT
* * *
21984904 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAAGGTTGTGGCAGTGG
66 TAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTGTGGCAGTGA
* * * * *
21984969 GACTAGCAGCACGTAGAGGGGGACCGAGCCGATCCCTGACTTATGCATTATGGCTCTCCGGCCGG
131 GACGAGCAGCACGCAGAGGGGGACCGAGCCGATCCCTGACTTATGCATTATGCCTCTCCGACAGG
* * *
21985034 CTCAACGCCCGAATGCTCGTGTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGA
196 CTCAACGCCCGAACGCTCGTGTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGA
* ** ** ** * * **
21985099 TCAGATTGGATCGAGGGTTTTGGTAGCAGGATCAACAGCACGCAGGAGGGACCGGGTCGGTCCTT
261 ACAGACCGGATCGAGGGTTGCGACAGCAGGATCAACAGCACGCAGGAGGGACCGGGCCAGTCCCC
* * * * * *
21985164 GGCTTGCGCATTTTACCTCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAG
326 GACTTGCACATTCTACCTCTCTGGCAGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAG
21985229 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAATCGGACTGAGGGTTACGGCAACAGGATCTAC
391 GCATACGGAGTTCATT-CCATGTCTAAGATCGAATCGGACTGAGGGTTACGGCAACAGGATCTAC
21985293 AGCATGCAGGGGGACTGGGC
455 AGCATGCAGGGGGACTGGGC
* * *
21985313 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGTAAGCCCGTTTCGTGGGT
1 CGATCCCCAGCTTGCGCATTCTACCTCTCCAACCGACTGAGCGCCCGCAAGCCCGTTTCGTGGGT
* * *
21985378 TAGCTTAGGCATAGGTAGTTCATTCCATGTCTATGCCCCAGCC-GAACCGAGGGTTGTGGCAGTG
66 TAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG-ACCGAAGGTTGTGGCAGTG
* * * * * *
21985442 AGACCGA-TAGCACGCAGAGGGGGACCGGGTCGATCCCT-AGCTTGTGCATTTTGCCTCTCCGAT
130 AGA-CGAGCAGCACGCAGAGGGGGACCGAGCCGATCCCTGA-CTTATGCATTATGCCTCTCCGAC
** * *
21985505 AGGCTCAGTGCCTGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTA
193 AGGCTCAACGCCCGAACGCTCGTGTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTA
* * * *
21985570 AGAACGGACCGGA-CTGAGGGTTGCGACAGCAGGATCGACAGCACGTAGG-GGGTACTGGGCCAG
258 AGAACAGACCGGATC-GAGGGTTGCGACAGCAGGATCAACAGCACGCAGGAGGG-ACCGGGCCAG
* * * *
21985633 TCCCCGACTTTCACATTCTACCTCTTTGGCAGGCTGAGCACCCGCACACTCGTTTTGTGGGTTGG
321 TCCCCGACTTGCACATTCTACCTCTCTGGCAGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGA
21985698 CTTAGGCATACGGAGTTCATTCCATGTCTAAG
386 CTTAGGCATACGGAGTTCATTCCATGTCTAAG
21985730 CATATGGAAT
Statistics
Matches: 356, Mismatches: 55, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
473 9 0.03
474 345 0.97
475 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (474 bp):
CGATCCCCAGCTTGCGCATTCTACCTCTCCAACCGACTGAGCGCCCGCAAGCCCGTTTCGTGGGT
TAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTGTGGCAGTGA
GACGAGCAGCACGCAGAGGGGGACCGAGCCGATCCCTGACTTATGCATTATGCCTCTCCGACAGG
CTCAACGCCCGAACGCTCGTGTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGA
ACAGACCGGATCGAGGGTTGCGACAGCAGGATCAACAGCACGCAGGAGGGACCGGGCCAGTCCCC
GACTTGCACATTCTACCTCTCTGGCAGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAG
GCATACGGAGTTCATTCCATGTCTAAGATCGAATCGGACTGAGGGTTACGGCAACAGGATCTACA
GCATGCAGGGGGACTGGGC
Found at i:21985823 original size:93 final size:93
Alignment explanation
Indices: 21985664--21985841 Score: 250
Period size: 93 Copynumber: 1.9 Consensus size: 93
21985654 CTCTTTGGCA
* * *
21985664 GGCTGAGCACCCGCACACTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 GGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
* *
21985729 GCATATGGAATTCATTCCCAATCCGACC
66 GCATATAGAACTCATTCCCAATCCGACC
* * * *
21985757 GGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATCCCCA-GTCTA
1 GGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTA
*
21985821 AGCATATAGAGCTCATTCCCA
65 AGCATATAGAACTCATTCCCA
21985842 GTCTAAGATC
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
93 71 0.96
94 3 0.04
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.28
Consensus pattern (93 bp):
GGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
GCATATAGAACTCATTCCCAATCCGACC
Found at i:21986188 original size:26 final size:26
Alignment explanation
Indices: 21986138--21986190 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
21986128 GTTGGCTTAG
*
21986138 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
21986164 GCATAC-GAAGTTCATTCCCA-ATCTAA
1 GCATACAG-AGTTCATT-CCATATCTAA
21986190 G
1 G
21986191 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:21986893 original size:26 final size:26
Alignment explanation
Indices: 21986863--21986915 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21986853 GTTGACTTAG
*
21986863 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
21986889 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21986915 G
1 G
21986916 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21987363 original size:158 final size:156
Alignment explanation
Indices: 21986889--21987390 Score: 479
Period size: 158 Copynumber: 3.2 Consensus size: 156
21986879 CCTAGTCTAA
* *
21986889 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCA-TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGACCGACA
* * * * * * *
21986954 GCACGCAGGAGGGACTGGGCTGATCCCC-AGGTTACACATTCTGCCTCTTTGGCCGACTGAGCGC
65 GCACGCAGGGGGGA-TCGGCCGATCCCCGA-CTTACGCATTCTGCCTCTTCGGCCGGCTGAGCGC
* *
21987018 CTGCATGCCCGTTTCATGGGTTAGCTTAG
128 CTGTATGCCCGTTTCATGGGTTGGCTTAG
* * * * * * * **
21987047 GCATAGGGAGTTCATTCCATGTCTGAGACCCAG-CTGGACCAAGGGTTGTGGCT-GTGGGACCGA
1 GCATACGGAGTTCATCCCA-GTCTAAGA-TCAGACCGGACCGAGGGTTGCGG-TAGCAGGACCGA
* * * * * * * *
21987110 CAGCACGTAGATGGGGATCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGC
63 CAGCACGCAG-GGGGGATCG-GCCGATCCCCGACTTACGCATTCTGCCTCTTCGGCCGGCTGAGC
** * *
21987175 GCCTGTATGCTTGTTTCGTGGGTTGACTTAG
126 GCCTGTATGCCCGTTTCATGGGTTGGCTTAG
* * *
21987206 GCATACGGAGTTCATGCCCAGTCTAAGGTTAGACCGGACCGAGGGTTGCGGTAGCAAGACCGACA
1 GCATACGGAGTTCAT-CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGACCGACA
* * * * * *
21987271 GCATGCAGGGGGGATCAGGCCGATCCCCGACTTACGCTTTCTACCTCTTCGACCGGCTGAGCACT
65 GCACGCAGGGGGGATC-GGCCGATCCCCGACTTACGCATTCTGCCTCTTCGGCCGGCTGAGCGCC
**
21987336 TGTACACCCGTTTCATGGGTTGGCTTAG
129 TGTATGCCCGTTTCATGGGTTGGCTTAG
* *
21987364 GCATACGGAGTTTATTCCATGTCTAAG
1 GCATACGGAGTTCATCCCA-GTCTAAG
21987391 CATACGGAGT
Statistics
Matches: 267, Mismatches: 66, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 7 0.03
158 141 0.53
159 116 0.43
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGACCGACAG
CACGCAGGGGGGATCGGCCGATCCCCGACTTACGCATTCTGCCTCTTCGGCCGGCTGAGCGCCTG
TATGCCCGTTTCATGGGTTGGCTTAG
Found at i:21987393 original size:26 final size:26
Alignment explanation
Indices: 21987364--21987416 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21987354 GTTGGCTTAG
*
21987364 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21987390 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21987416 G
1 G
21987417 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21988035 original size:26 final size:26
Alignment explanation
Indices: 21987983--21988035 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21987973 GTTGGCTTAG
*
21987983 GCATACGCAATTCATTCCATGTTTAA
1 GCATACGCAATTCATTCCATGTCTAA
* *
21988009 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGCAATTCATT-CCATGTCTAA
21988035 G
1 G
21988036 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGCAATTCATTCCATGTCTAA
Found at i:21989128 original size:159 final size:158
Alignment explanation
Indices: 21988743--21989233 Score: 495
Period size: 158 Copynumber: 3.1 Consensus size: 158
21988733 CCCAGTCTAA
* * * ** *
21988743 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATGGGACCGAGGGTTACGATAGCAGGATTGACA
1 GCATACGAAGTTCATTCCCAGTCTAACATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *
21988808 GCACGCAGGGGGGATCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGTGCC
66 GCACGCAGGGGGGATCGGACCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGTGCC
* * * *
21988873 CGTACGCCCGTTCCGTGGGTTGGCTTAG
131 CGCACGCTCATTTCGTGGGTTGGCTTAG
* * ** * * * ** * *
21988901 GCATAGGAAGTTCATT-CAATGTCTAAGCCCCAG-TCAGACGGAGGGTTGTGGCAGTGGGACCGG
1 GCATACGAAGTTCATTCCCA-GTCTAA-CATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * ** * * *
21988964 CAGCACGCATAGAGGGATCGGGCCAATCCTCGGCTTGCATATTATGCCTCTTCGACTGGCTCAGT
64 CAGCACGCA-GGGGGGATCGGACCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGT
* *
21989029 GCCCGCACGCTCATTTTGTGGGTTGACTTAG
128 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * *
21989060 GCATAC-AGAGTTCATTCCCAGTCTAATATCAGATCGGACTGAGGGTTGCGGCAGCAAGATCGAT
1 GCATACGA-AGTTCATTCCCAGTCTAACATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * *
21989124 AGCACGCAGGGGGGATCGAACCGATCCTCGGCTTGTGCATTCTTCCTCTCCGA-TCGGCTGAGTG
65 AGCACGCAGGGGGGATCGGACCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACT-GGCTGAGTG
* ** *
21989188 CCTGCATACTCATTTCATGGGTTGGCTTAG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
21989218 GCATACGAAGTTCATT
1 GCATACGAAGTTCATT
21989234 ACATGTCTAA
Statistics
Matches: 258, Mismatches: 67, Indels: 16
0.76 0.20 0.05
Matches are distributed among these distances:
157 3 0.01
158 132 0.51
159 121 0.47
160 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAACATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGATCGGACCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGTGCC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:21989571 original size:347 final size:348
Alignment explanation
Indices: 21989168--21990131 Score: 1017
Period size: 357 Copynumber: 2.7 Consensus size: 348
21989158 GTGCATTCTT
* * ** * * *
21989168 CCTCTCCGATCGGCTGAGTGCCTGCATACTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCAT
1 CCTCTCCGATCGACTGAGTGCCTGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
** * * **
21989233 TACATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGTAG
66 CCCA-GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAG
* * * *
21989298 CAGGACTAGCAGCATGCAGGGGGGACTAGGCCGATCCCCGACTTGCACATTCTGTCTCTCTGGTC
130 CAGGA-TAGCAGCACGCAGGGGGGA-TAGGCCGATCCTCGACTTGCACATTCTGCCTCTCCGGTC
* * *
21989363 AACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAA
193 GACTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
21989428 ACCCC-A-G-CCA-AACCGACAATGGGATCGACAGCACGCAGAG-GGGTATCGGGTTGATCCTCA
258 ACCCCAACGACCAGAACCGACAATGGGACCGACAGCACGCAAAGAAGG-ATCGGGCTGATCCCCA
** **
21989488 GCTTGTGCATTATGCCTCTT-CGGTCGG
322 GCTTGCACATTATGCCT-TTCCGACCGG
*
21989515 CCTCTCCGATCGACTGAGTGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGATCGACTGAGTGCCTGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
21989580 CCCAAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGATAA
66 CCC-AGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAG
* * * *
21989645 TAGGATCAGCAGCACGTAGGGGGGATCGGGCCGATCCTC-AGCTTGCACAAATT-TACCTCTCCG
130 CAGGAT-AGCAGCACGCAGGGGGGAT-AGGCCGATCCTCGA-CTTGCAC--ATTCTGCCTCTCCG
* * * * * * * *
21989708 GCCGGCTGAGCGCCCGCACGCCCATTTTATGGGTTGGGTTAGGAATAGGGAGTTCATTCCATGTC
190 GTCGACTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* **** * * ** *
21989773 TAATCCCCAACTGGACCATGGGTTGTGGCAGTGGGACCGGTAGCATGCAAAGAAGGATCGGGCTG
255 TAAACCCCAAC--GACCA---GAACCGACAATGGGACCGACAGCACGCAAAGAAGGATCGGGCTG
* * *
21989838 ATCCCCGGCTTGCATATTATGGCTTTCCGACCGG
315 ATCCCCAGCTTGCACATTATGCCTTTCCGACCGG
* * * * *
21989872 CCTCTCCGACCGACTGAGCGCTTGTACGCTCGTTTCGTGGGTTGACTTAGGCCTACGGAGTTCAT
1 CCTCTCCGATCGACTGAGTGCCTGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * *
21989937 CCCCAGTCTAATCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAG
66 -CCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAG
* * * * * **
21990002 GAGGATCGACAGCACGCAGGGGGGATCGCGCCGGTCCTCGGCTTGTGCATTCTGCCTCTCCGGTC
130 CAGGATAG-CAGCACGCAGGGGGGATAG-GCCGATCCTCGACTTGCACATTCTGCCTCTCCGGTC
* *
21990067 GACTGAGCGCCTGTACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
193 GACTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
21990132 GCATATGGAG
Statistics
Matches: 504, Mismatches: 91, Indels: 35
0.80 0.14 0.06
Matches are distributed among these distances:
346 3 0.01
347 147 0.29
348 69 0.14
349 4 0.01
352 1 0.00
353 3 0.01
355 3 0.01
356 71 0.14
357 198 0.39
358 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (348 bp):
CCTCTCCGATCGACTGAGTGCCTGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
CCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGC
AGGATAGCAGCACGCAGGGGGGATAGGCCGATCCTCGACTTGCACATTCTGCCTCTCCGGTCGAC
TGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACC
CCAACGACCAGAACCGACAATGGGACCGACAGCACGCAAAGAAGGATCGGGCTGATCCCCAGCTT
GCACATTATGCCTTTCCGACCGG
Found at i:21989595 original size:26 final size:26
Alignment explanation
Indices: 21989565--21989617 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21989555 GTTGACTTAG
21989565 GCATACGGAGTTCA-TCCCAAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
21989591 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21989617 G
1 G
21989618 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21990136 original size:26 final size:26
Alignment explanation
Indices: 21990106--21990158 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21990096 GTTGGCTTAG
21990106 GCATACGAAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCTCA-GTCTAA
* * *
21990132 GCATATGGAGTTCTTTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
21990158 G
1 G
21990159 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:21990515 original size:26 final size:26
Alignment explanation
Indices: 21990486--21990538 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21990476 GTTGACTTTG
21990486 GCATACGGAGCTCATCCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
* *
21990512 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
21990538 G
1 G
21990539 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAGTCTAA
Found at i:21990840 original size:159 final size:157
Alignment explanation
Indices: 21990512--21991014 Score: 440
Period size: 158 Copynumber: 3.2 Consensus size: 157
21990502 CCCAGTCTAA
* * ** * * * * * *
21990512 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGGTCGAGGTTTGCGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCAGACTGGACCGAGGGTTGTGGTAGCAGGACCGACA
* * * * * *
21990577 GGACGTAGGGGGGACCAG-GCTGATCACTGGCTTGCGCATTCTGCGTCTCCGACTGGCTAAGTGC
65 GCACGTAAGGGGGA-TAGCGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACTGGCTAAGTGC
* * ** *
21990641 CTGCACGCCCATTTAATGGGTTGGCATAG
129 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * *
21990670 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGTTTGTGGTAGTCA-GACCGG
1 GCATACGGAGTTCATTCCA-GTCTAAG-ACCAGACTGGACCGAGGGTTGTGGTAG-CAGGACCGA
* * * * *
21990733 TAGCACGTAGAGGGGGATTAG-GTCGAT-CTTCGGCTTGCGCATTATGCCTCTCCGACTGGCTCA
63 CAGCACGTA-AGGGGGA-TAGCGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGACTGGCTAA
*
21990796 GTGCCCGCACGCTCATTTCGTGGGTTGACTTAG
125 GTGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * * *
21990829 GCATACAGAGTTTGTTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCAGACTGGACCGAGGGTTGTGGTAGCAGGACCGACA
* * * * ** * * *
21990894 GCACGTAAGGGGGATCGCGCCGGTCCCTAGCTTGCACATTCTGCCTCTCCGGTTAGCTGAGCGCC
65 GCACGTAAGGGGGATAGCGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACTGGCTAAGTGCC
* *
21990959 CGCACGCTCGTTTCGTGGGTTGGTTTAG
130 CGCACGCTCATTTCGTGGGTTGGCTTAG
*
21990987 GCATACGGAGTTCATTCCCAATCTAAGA
1 GCATACGGAGTTCATT-CCAGTCTAAGA
21991015 TCGGACCGAA
Statistics
Matches: 277, Mismatches: 58, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
157 5 0.02
158 144 0.52
159 125 0.45
160 3 0.01
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGACCAGACTGGACCGAGGGTTGTGGTAGCAGGACCGACAG
CACGTAAGGGGGATAGCGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACTGGCTAAGTGCCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:21991173 original size:170 final size:171
Alignment explanation
Indices: 21990957--21991291 Score: 392
Period size: 170 Copynumber: 2.0 Consensus size: 171
21990947 TAGCTGAGCG
* * * * * *
21990957 CCCGCACGCTCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCCA-ATCTAAGATCG-GA
1 CCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGACTTCATT-CCATATCAAAGATCGAG-
*
21991020 CCGAACCAAGGGTTGCGACAGCAGGACCAGCAGCAGGATCGACAGCACGCAGG-GGGG-ACCAGG
64 CCGAACCAAGGGTTGCGACAGCAGGACCAGCAGCAGGATCGACAGCACGC-GGAGGGGAACCGGG
* * * * *
21991083 -TCGATCCTCGGCTTGCGCATTCTGCCTCTTCGATCGACTGAGTT
128 CT-GATCCCCGGCTTGCACATTATGCCTCTCCAATCGACTGAGTT
* * * *
21991127 CCCGCACACTCGTTTTATGGGTTGGCTTAGGCATACAGACTTCATTCCATGTCAAAGCTCTAGCC
1 CCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGACTTCATTCCATATCAAAGATCGAGCC
* * * * * * *
21991192 GGACCAAGGGTTGTGGCAGCAGGACCGGCAGCTGGATCGATAGCACGCGGAGGGGAATCGGGCTG
66 GAACCAAGGGTTGCGACAGCAGGACCAGCAGCAGGATCGACAGCACGCGGAGGGGAACCGGGCTG
21991257 ATCCCCGGCTTGCACATTATGCCTCTCCAATCGAC
131 ATCCCCGGCTTGCACATTATGCCTCTCCAATCGAC
21991292 CTCTCCGACC
Statistics
Matches: 137, Mismatches: 23, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
169 5 0.04
170 95 0.69
171 36 0.26
172 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.21
Consensus pattern (171 bp):
CCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGACTTCATTCCATATCAAAGATCGAGCC
GAACCAAGGGTTGCGACAGCAGGACCAGCAGCAGGATCGACAGCACGCGGAGGGGAACCGGGCTG
ATCCCCGGCTTGCACATTATGCCTCTCCAATCGACTGAGTT
Found at i:21991720 original size:26 final size:26
Alignment explanation
Indices: 21991684--21991733 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
21991674 GGCTTAGGCA
21991684 TACAGAGTTCATT-CCATGTCTAAGCT
1 TACAGAGTTCATTCCCA-GTCTAAGCT
21991710 TACAGAGTTCATTCCCAGTCTAAG
1 TACAGAGTTCATTCCCAGTCTAAG
21991734 AGTTTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (26 bp):
TACAGAGTTCATTCCCAGTCTAAGCT
Found at i:21992355 original size:159 final size:156
Alignment explanation
Indices: 21992075--21992541 Score: 403
Period size: 159 Copynumber: 3.0 Consensus size: 156
21992065 GATCAGACCG
* * * * * *
21992075 GACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGGGGGGA-CTGGGCCGATCCCCGGCTTAC
1 GACCGAAGGTTGCGGCAGCAGGATCCACAGCACGCAGGGGGGATC-GGGTCGATCCCCGGCTTGC
* ** * * * * *
21992139 GCATTCT-G-CTGCTCTGGCCAGCTGAGTGCCCGTACGCCCA-TTTCATGGGTTGGCTTAGGCAT
65 ACATT-TGGCCT-CTCCAGCCGGCTCAGCGCCCGCACGCTCAGTTT-ATGGGTTGGCTTAGGCAT
* *
21992201 AGGGAGTTCATTCCTTGTCTAAGCGCCAGCCA
127 ACGGAGTTCATTCCATGTCTAAGCG-CA-CCA
* * * * *
21992233 GACTGAGGGTTGTGGCAGCGGGA-CCAGCAGCACGTAGAGGGGGATCGGGTCGATCCCCGGCTTG
1 GACCGAAGGTTGCGGCAGCAGGATCCA-CAGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTG
** * * * *
21992297 CGGATTAT-GCCTCTCC-GATCTGCTCAGCGCCTGCACGCTC-GTTTAGTGGGTTGACTTAGGCA
64 CACATT-TGGCCTCTCCAG-CCGGCTCAGCGCCCGCACGCTCAGTTTA-TGGGTTGGCTTAGGCA
* * *
21992359 TACGAAGTTCATTCCCA-GTCTAAGATCGGACTA
126 TACGGAGTTCATT-CCATGTCTAAG--CGCACCA
* * *
21992392 GACCGAAGGTTGCGGTAGCAGGATCTACAGCACGCAGGGGGGATCGGGTCGGTCCCCGGCTTGCA
1 GACCGAAGGTTGCGGCAGCAGGATCCACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCA
* * * * *
21992457 CATTTGGCCTCTCCAGCCGGTTGAGTGCCCGCATGCTCATTTTATGGGTTGGCTTAGGCATACGG
66 CATTTGGCCTCTCCAGCCGGCTCAGCGCCCGCACGCTCAGTTTATGGGTTGGCTTAGGCATACGG
21992522 AGTTCATTCCATGTCTAAGC
131 AGTTCATTCCATGTCTAAGC
21992542 ATACGGAGTT
Statistics
Matches: 249, Mismatches: 45, Indels: 32
0.76 0.14 0.10
Matches are distributed among these distances:
156 1 0.00
157 6 0.02
158 115 0.46
159 117 0.47
160 8 0.03
161 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (156 bp):
GACCGAAGGTTGCGGCAGCAGGATCCACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCA
CATTTGGCCTCTCCAGCCGGCTCAGCGCCCGCACGCTCAGTTTATGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCGCACCA
Found at i:21992513 original size:158 final size:157
Alignment explanation
Indices: 21992034--21992541 Score: 456
Period size: 158 Copynumber: 3.2 Consensus size: 157
21992024 CCCAGTCTAA
** * * *
21992034 GCATACGGAGTTCATTCGTAGTCTAAGATCAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG--C-G-CCAG-CCAGACCGAGGGTTGCGGTAGCAGGAT
* * * * *
21992099 CGACAGCACGCAGGGGGGA-CTGGGCCGATCCCCGGCTTACGCATTCTG-CTGCTCTGGCCAGCT
61 CCACAGCACGCAGGGGGGATC-GGGTCGATCCCCGGCTTGCGCATTATGCCT-CTC-CGCCAGCT
* * *
21992162 GAGTGCCCGTACGCCCATTTCATGGGTTGGCTTAG
123 GAGTGCCCGCACGCTCATTTTATGGGTTGGCTTAG
* ** * * * *
21992197 GCATAGGGAGTTCATTCCTTGTCTAAGCGCCAGCCAGACTGAGGGTTGTGGCAGCGGGA-CCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGCGCCAGCCAGACCGAGGGTTGCGGTAGCAGGATCCA-C
* * * * * *
21992261 AGCACGTAGAGGGGGATCGGGTCGATCCCCGGCTTGCGGATTATGCCTCTCCGATCTGCTCAGCG
65 AGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCG-CCAGCTGAGTG
* * *
21992326 CCTGCACGCTC-GTTTAGTGGGTTGACTTAG
128 CCCGCACGCTCATTTTA-TGGGTTGGCTTAG
* * * * *
21992356 GCATACGAAGTTCATTCCCAGTCTAAGATCG-GA-CTAGACCGAAGGTTGCGGTAGCAGGATCTA
1 GCATACGGAGTTCATTCCCAGTCTAAG--CGCCAGCCAGACCGAGGGTTGCGGTAGCAGGATCCA
* * * *
21992419 CAGCACGCAGGGGGGATCGGGTCGGTCCCCGGCTTGCACATT-TGGCCTCTCCAGCCGGTTGAGT
64 CAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTAT-GCCTCTCC-GCCAGCTGAGT
*
21992483 GCCCGCATGCTCATTTTATGGGTTGGCTTAG
127 GCCCGCACGCTCATTTTATGGGTTGGCTTAG
21992514 GCATACGGAGTTCATT-CCATGTCTAAGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGC
21992542 ATACGGAGTT
Statistics
Matches: 279, Mismatches: 53, Indels: 33
0.76 0.15 0.09
Matches are distributed among these distances:
156 1 0.00
157 6 0.02
158 119 0.43
159 119 0.43
160 7 0.03
161 3 0.01
163 24 0.09
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCGCCAGCCAGACCGAGGGTTGCGGTAGCAGGATCCACA
GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGCCAGCTGAGTGCCC
GCACGCTCATTTTATGGGTTGGCTTAG
Found at i:21992543 original size:26 final size:26
Alignment explanation
Indices: 21992514--21992566 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21992504 GTTGGCTTAG
21992514 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
21992540 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21992566 G
1 G
21992567 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21992894 original size:159 final size:157
Alignment explanation
Indices: 21992603--21993054 Score: 473
Period size: 158 Copynumber: 2.9 Consensus size: 157
21992593 GCAAGACCAG
* *
21992603 CAGCAGGATCGGTAGCACGCAGGGGGGATCGGGCCGATCCCTGACTTACGCATTCTGCCTCTCCG
1 CAGCAGGATCGGTAGCATGCAGGGGGGATCGGGTCGATCCC-GACTTACGCATTCTGCCTCTCCG
* * * * *
21992668 ATTGGCTGAGCCCTCCGCACGCCCATTTCATGGGTTGGCTTAGGCAT-CAGAGTTCATT-CCATA
65 ACTGGCTGAGCAC-CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCA-A
* ** *
21992731 TCTAAGCCCCAG-CTGGACCGAGGGTTGTCA
128 TCTAAG-ACCAGACCAGACCGAGGGTTGACA
* * * * *
21992761 CAGCAGGACCGGTAGCATGTAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTTC
1 CAGCAGGATCGGTAGCATGCAG-GGGGGATCGGGTCGATCC-CGACTTACGCATTCTGCCTC-TC
* * * *
21992826 CG-CTGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCAG
63 CGACTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCAA
* **
21992890 TCTAAGATCAGACCAGACCGAGGGTTGAGG
128 TCTAAGACCAGACCAGACCGAGGGTTGACA
* *** * * * *
21992920 CACCAGGATCAACAGCATGCAGGGGGGACCAGGTCGATCCCCGACTTACGTATTCTGCCTCTCTG
1 CAGCAGGATCGGTAGCATGCAGGGGGGATCGGGTCGAT-CCCGACTTACGCATTCTGCCTCTCCG
** * *
21992985 ACCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTCGGTATAC-GAAGTTCATTCCCAAT
65 ACTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAG-AGTTCATTCCCAAT
21993049 CTAAGA
129 CTAAGA
21993055 TTTGAGCCAT
Statistics
Matches: 241, Mismatches: 44, Indels: 18
0.80 0.15 0.06
Matches are distributed among these distances:
157 4 0.02
158 139 0.58
159 90 0.37
160 8 0.03
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (157 bp):
CAGCAGGATCGGTAGCATGCAGGGGGGATCGGGTCGATCCCGACTTACGCATTCTGCCTCTCCGA
CTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCT
AAGACCAGACCAGACCGAGGGTTGACA
Found at i:21992982 original size:513 final size:503
Alignment explanation
Indices: 21991971--21993053 Score: 1253
Period size: 513 Copynumber: 2.1 Consensus size: 503
21991961 GGGGGACCGA
* * * *
21991971 CTGAGCGCTCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCAGTCTAAGC
** ** *
21992036 ATACGGAGTTCATTCGTAGTCTAAGATCAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGATCG
65 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGGACCGAGGGAAGCAGCAGCAGGATCG
* * * *
21992101 ACAGCACGCAGGGGGGACTGGGCCGATCCCCGGCTTACGCATTCTGCTGCTCTGGCCAGCTGAGT
130 ACAGCACGCAGGGGGGACTGGGCCGATCCCCGACTTACGCATTCTGCTGCTCCGACCAGCTGAGC
* * * * *
21992166 GCCCGTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCGCCAGC
195 CCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCATATCTAAGCCCCAGC
* ** *
21992231 CAGACTGAGGGTTGTGGCAGCGGGACCAGCAGCACGTAGAGGGGGATCGGGTCGATCCCCGGCTT
259 CAGACCGAGGGTTGTCACAGCAGGACCAGCAGCACGTAGAGGGGGATCGGGTCGATCCCCGGCTT
* * *
21992296 GCGGATTATGCCTCTCCGATCTGCTCAGCGCCTGCACGCTCGTTTAGTGGGTTGACTTAGGCATA
324 GCGCATTATGCCTCTCCGA-CTGCTCAGCACCCGCACGCTCGTTTAGTGGGTTGACTTAGGCATA
* * * * * *
21992361 CGAAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAAGGTTGCGGTAGCAGGATCTACAGCACG
388 CGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGAGGCACCAGGATCAACAGCACG
* * * * * *
21992426 CAGGGGGGATCGGGTCGGTCCCCGGCTTGCACATTTGGCCTCTCCAG-CCGG
453 CAGGGGGGACCAGGTCGATCCCCGACTTACACATTTGGCCTCT-CAGACCAG
* ** * *
21992477 TTGAGTGCCCGCATGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGC
* ** * *** *
21992542 ATACGGAGTTTATTCCCAGTCTAAGATTGGATCGGACCTAGGTTTGCGGTAGCAAGACCAGCAGC
65 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACC--GGACCGAGG--G-AAG--CAGCAGC
** * *
21992607 AGGATCGGTAGCACGCAGGGGGGA-TCGGGCCGATCCCTGACTTACGCATTCTGCCT-CTCCGAT
123 AGGATCGACAGCACGCAGGGGGGACT-GGGCCGATCCCCGACTTACGCATTCTG-CTGCTCCGAC
**
21992670 TGGCTGAGCCCTCCGCACGCCCATTTCATGGGTTGGCTTAGGCATCA-GAGTTCATTCCATATCT
186 CAGCTGAGCCC-CCGCACGCCCATTTCATGGGTTGGCTTAGGCAT-AGGAGTTCATTCCATATCT
** * * *
21992734 AAGCCCCAGCTGGACCGAGGGTTGTCACAGCAGGACCGGTAGCATGTAGAGGGGGATCGGGTCGA
249 AAGCCCCAGCCAGACCGAGGGTTGTCACAGCAGGACCAGCAGCACGTAGAGGGGGATCGGGTCGA
* *
21992799 TCCTCGGCTTGCGCATTATGCCTCTTCCG-CTGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTG
314 TCCCCGGCTTGCGCATTATGCCTC-TCCGACT-GCTCAGCACCCGCACGCTCGTTTAGTGGGTTG
* *
21992863 ACTTATGCATAC-AGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGGCACCAGG
377 ACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGAGGCACCAGG
* ** *
21992927 ATCAACAGCATGCAGGGGGGACCAGGTCGATCCCCGACTTACGTATTCT-GCCTCTCTGACCAG
441 ATCAACAGCACGCAGGGGGGACCAGGTCGATCCCCGACTTACACATT-TGGCCTCTCAGACCAG
* * * * * *
21992990 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTCGGTATACGAAGTTCATTCCCAATCTAAG
1 CTGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAG
21993054 ATTTGAGCCA
Statistics
Matches: 481, Mismatches: 78, Indels: 29
0.82 0.13 0.05
Matches are distributed among these distances:
505 3 0.01
506 86 0.18
508 5 0.01
510 1 0.00
511 1 0.00
512 6 0.01
513 336 0.70
514 42 0.09
515 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (503 bp):
CTGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGGACCGAGGGAAGCAGCAGCAGGATCGA
CAGCACGCAGGGGGGACTGGGCCGATCCCCGACTTACGCATTCTGCTGCTCCGACCAGCTGAGCC
CCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGAGTTCATTCCATATCTAAGCCCCAGCCA
GACCGAGGGTTGTCACAGCAGGACCAGCAGCACGTAGAGGGGGATCGGGTCGATCCCCGGCTTGC
GCATTATGCCTCTCCGACTGCTCAGCACCCGCACGCTCGTTTAGTGGGTTGACTTAGGCATACGA
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGAGGCACCAGGATCAACAGCACGCAG
GGGGGACCAGGTCGATCCCCGACTTACACATTTGGCCTCTCAGACCAG
Found at i:21993138 original size:11 final size:11
Alignment explanation
Indices: 21993122--21993153 Score: 57
Period size: 10 Copynumber: 3.0 Consensus size: 11
21993112 CCCGAGGCAC
21993122 CATCGTCGGAG
1 CATCGTCGGAG
21993133 CATCGTC-GAG
1 CATCGTCGGAG
21993143 CATCGTCGGAG
1 CATCGTCGGAG
21993154 AGCCTAACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.19, C:0.28, G:0.34, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:21993953 original size:26 final size:26
Alignment explanation
Indices: 21993916--21993968 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21993906 GTTGCCTTAG
*
21993916 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
21993942 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21993968 G
1 G
21993969 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21995175 original size:26 final size:26
Alignment explanation
Indices: 21995145--21995196 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21995135 TTGACTTAGA
21995145 CATACGAAGTTCATCCCCAGTCTAAG
1 CATACGAAGTTCATCCCCAGTCTAAG
* * *
21995171 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGAAGTTCATCCCCAGTCTAAG
21995197 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAGTCTAAG
Found at i:21995480 original size:159 final size:158
Alignment explanation
Indices: 21995211--21995513 Score: 349
Period size: 159 Copynumber: 1.9 Consensus size: 158
21995201 GATCGGACCA
* * * * *
21995211 AGGGTTGTGGCAGTAGGATCGACAGCATGCAGGGGGGACCGTACCGATCCTCGGCTTGCACATTC
1 AGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGACCGGACCGATCCTCGGCTTGCACATTA
* * ** * * * *
21995276 TGCCTCTCCGGCCTGCTGGGTGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTC
66 TGACTCTCCGGCCGGCTCAGTACCCGCACGCCCGTTTCGTGGGTTGACTTAGACATAGGGAGTTC
21995341 ATT-CCATGTCTAAGCCCCAGTCGAATCG
131 ATTCCCA-GTCTAAGCCCCAGTCGAATCG
* ** *
21995369 AGGGTTGTGGCAGCAGGACCCG-CCGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCAT
1 AGGGTTGTGGCAGCAGGA-CCGACAGCACGCAG-GGGGGACCGGACCGATCCTCGGCTTGCACAT
* * * * * **
21995433 TATGACTCTTCGGTCGGCTCAGTACCCGTACGCTCGTTTCGTGGGTTGACTTATACATATTGAGT
64 TATGACTCTCCGGCCGGCTCAGTACCCGCACGCCCGTTTCGTGGGTTGACTTAGACATAGGGAGT
21995498 TCATTCCCAGTCTAAG
129 TCATTCCCAGTCTAAG
21995514 ATCAGACCGG
Statistics
Matches: 118, Mismatches: 24, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
158 25 0.21
159 90 0.76
160 3 0.03
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.25
Consensus pattern (158 bp):
AGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGACCGGACCGATCCTCGGCTTGCACATTA
TGACTCTCCGGCCGGCTCAGTACCCGCACGCCCGTTTCGTGGGTTGACTTAGACATAGGGAGTTC
ATTCCCAGTCTAAGCCCCAGTCGAATCG
Found at i:21996392 original size:26 final size:26
Alignment explanation
Indices: 21996356--21996408 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21996346 GTTGACTTAG
21996356 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21996382 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21996408 G
1 G
21996409 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21996868 original size:158 final size:158
Alignment explanation
Indices: 21996382--21996883 Score: 485
Period size: 158 Copynumber: 3.2 Consensus size: 158
21996372 CCCAGTCTAA
* ** *
21996382 GCATACGGAGTTCATTCC-TAGTCTAAGATCGGATCGGACCAAGGGTTGCGGCAGTAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * * *
21996446 AGCATGGAGGGGGGACCGTA-CCGATCCTCGGCTTGCACATTTTGCCTCTCCGGCCTGCTGGGTG
65 AGCACGCAGGGGGGACC-AAGCCGATCCCCGGCTTGCGCATTATGCCTTTCCGACCGGCTGAGTG
* *
21996510 CCCGCACTCCCGTTTTGTGGGTTGGCTTAG
129 CCCGTACTCTCGTTTTGTGGGTTGGCTTAG
* ** * * * *
21996540 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGA-TCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACT-GAGGGTTGCGGCAGCAGGATCGA
* * * ** * * *
21996603 CCGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGACTCTT-CGATCGGCTTAG
64 CAGCACGCAG-GGGGGACCAAGCCGATCCCCGGCTTGCGCATTATGCCT-TTCCGACCGGCTGAG
* * * *
21996667 TGCCCGTACACTCGTTTTATGGGTTGACTTAT
127 TGCCCGTACTCTCGTTTTGTGGGTTGGCTTAG
* * *
21996699 GCATACTGAGTTCATTCCCA-GTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
21996763 AGCACGCAGGGGGGACCAAGCTGATCCCCGGTTTGCGCGTTCTGCCTTTCCGACCGGCTGAGCGC
65 AGCACGCAGGGGGGACCAAGCCGATCCCCGGCTTGCGCATTATGCCTTTCCGACCGGCTGAGTGC
* *
21996828 CCATACTCTCGTTTCGTGGGTTGGCTTAG
130 CCGTACTCTCGTTTTGTGGGTTGGCTTAG
*
21996857 GTATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
21996884 CATACGGAGT
Statistics
Matches: 269, Mismatches: 64, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
157 5 0.02
158 142 0.53
159 117 0.43
160 5 0.02
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCAAGCCGATCCCCGGCTTGCGCATTATGCCTTTCCGACCGGCTGAGTGCC
CGTACTCTCGTTTTGTGGGTTGGCTTAG
Found at i:21996907 original size:26 final size:26
Alignment explanation
Indices: 21996859--21996909 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21996849 TGGCTTAGGT
*
21996859 ATACGGAGTTCATTCCATGTCTAAGC
1 ATACGGAGTTCATTCCATATCTAAGC
21996885 ATACGGAGTTCATTCCCA-ATCTAAG
1 ATACGGAGTTCATT-CCATATCTAAG
21996910 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATATCTAAGC
Found at i:21998070 original size:157 final size:156
Alignment explanation
Indices: 21997622--21998093 Score: 477
Period size: 158 Copynumber: 3.0 Consensus size: 156
21997612 GTCCTAGTCT
*
21997622 AAGATCGGACCAGAGCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGAT
1 AAGACCGGACCAGA-CGAGGGTTGCGGCAGCAGGATCGACAGCACGCA-GGGGGACCGGGCCGAT
** * * ** *
21997687 CCCCTGCTTGTGCATTCTACCTC-TCCAGCCGACTGAGCGCCCACACGCTCATTTCATGGGTTGG
64 CCCC-GCTTACGCATTCTGCCTCTTCGA-CCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGG
* *
21997751 CTTAGGCATAGGGAGTTCATT-CCATGTCT
127 CTTAGGCATACGGAGTTCATTCCCATGTCG
* ** ** * *
21997780 AAGCCCCAACCAGACTGAGGGTTGTAGCAGCAGGA-CGGACAGCACACCGAGGGGACCGGGCCGA
1 AAGACCGGACCAGAC-GAGGGTTGCGGCAGCAGGATC-GACAGCACGCAG-GGGGACCGGGCCGA
* * * * * * ** *
21997844 TCCTCGGCTTACGCATTATGCCTCTTCGATCGGCTCAACATCCGTACGCTCGTTTCATGGGTTGA
63 TCC-CCGCTTACGCATTCTGCCTCTTCGACCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGG
21997909 CTTAGGCATACGGAGTTCATTCCCA-GTCG
127 CTTAGGCATACGGAGTTCATTCCCATGTCG
* ** * * * * * *
21997938 ACGATGGGACCGGATCGAGGGTTGCGGTAGCAGGATCGACAGCATGTAGGGGGACCGAGCCAATC
1 AAGACCGGACCAGA-CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGACCGGGCCGATC
* * *
21998003 CCCGACTTACACATTCTGCCTCTTTGACCGACTGAGCGCCCGTACACTCGTTTCATGGGTTGGCT
65 CCCG-CTTACGCATTCTGCCTCTTCGACCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCT
21998068 TAGGCATACGGAGTTCATT-CCATGTC
129 TAGGCATACGGAGTTCATTCCCATGTC
21998094 TAAGCATACA
Statistics
Matches: 250, Mismatches: 54, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
156 5 0.02
157 89 0.36
158 147 0.59
159 9 0.04
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (156 bp):
AAGACCGGACCAGACGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGACCGGGCCGATCC
CCGCTTACGCATTCTGCCTCTTCGACCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTA
GGCATACGGAGTTCATTCCCATGTCG
Found at i:21998101 original size:26 final size:26
Alignment explanation
Indices: 21998071--21998123 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21998061 GTTGGCTTAG
*
21998071 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
21998097 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21998123 G
1 G
21998124 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21998478 original size:26 final size:26
Alignment explanation
Indices: 21998448--21998500 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21998438 GTTGAATTAG
* *
21998448 GCATACGGGGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
21998474 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
21998500 G
1 G
21998501 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:21998768 original size:159 final size:158
Alignment explanation
Indices: 21998474--21998978 Score: 448
Period size: 159 Copynumber: 3.2 Consensus size: 158
21998464 CCCAATCTAA
* * * * * * ** **
21998474 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGCGACAGGAGGATTGA
1 GCATACAGAGTTCATT-CCATGTCTAAGCACCATA-CAGACCGAGGGTTGTGGCAACAGGACCGA
* * * * * ** * * **
21998537 CAGCACGTAGGGGGGACTGAGTCGATCCCTAGCTTGCGTATTCTGCCTCTTCGACCGGCTGAGCG
64 CAACACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTGAGCG
*
21998602 CCCGCACGTCCATTTCGTGGGTTGGTTTAG
129 CCCGCACGTCCATTTCGTGGGTTGGCTTAG
** * * *
21998632 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT-CGGACCGAGGGTTGTGGCAAC-GAGACCGG
1 GCATACAGAGTTCATTCCATGTCTAAGCACCA-TACAGACCGAGGGTTGTGGCAACAG-GACCGA
* ** * * * *
21998695 CAACATGCAGAGGGGGACCGGGTTGATCCCCGGTTTGTGCATTATGCCTCTTCGGTCGGCTCAGT
64 CAACACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTGAGC
* *
21998760 GCCCGCACG-CTCGTTTCGTGGGTTGACTTAG
128 GCCCGCACGTC-CATTTCGTGGGTTGGCTTAG
* * * **
21998791 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCATACCAGACTGAGGGTTGTGGCAGCAGGATTGA
1 GCATACAGAGTTCATT-CCATGTCTAAGCACCATA-CAGACCGAGGGTTGTGGCAACAGGACCGA
* * * *
21998854 CAACACGCAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCATCTCCGGTCGGCTGAGCG
64 CAACACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTGAGCG
* **
21998919 CCCGCACACTCGTTTTCGTGGGTTGGCTTAG
129 CCCGCAC-GTCCATTTCGTGGGTTGGCTTAG
21998950 GCATACAGAGTTCATTCCATGTCTAAGCA
1 GCATACAGAGTTCATTCCATGTCTAAGCA
21998979 TACGGAGTTC
Statistics
Matches: 276, Mismatches: 57, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
157 5 0.02
158 105 0.38
159 160 0.58
160 6 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCATGTCTAAGCACCATACAGACCGAGGGTTGTGGCAACAGGACCGACA
ACACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTGAGCGCC
CGCACGTCCATTTCGTGGGTTGGCTTAG
Found at i:21998986 original size:26 final size:26
Alignment explanation
Indices: 21998950--21999002 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21998940 GTTGGCTTAG
21998950 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
21998976 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21999002 G
1 G
21999003 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22000725 original size:26 final size:26
Alignment explanation
Indices: 22000689--22000741 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22000679 GTTGACTTAG
22000689 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
22000715 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22000741 G
1 G
22000742 ATTGAACGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22001086 original size:159 final size:158
Alignment explanation
Indices: 22000779--22001218 Score: 348
Period size: 159 Copynumber: 2.8 Consensus size: 158
22000769 TAGCATCGAC
* * * * * * *
22000779 AGCATGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTTTCTGGCCAGATGAGCGC
1 AGCATGCAGGGGGGATAGGGCCGATCCCCAGATTGCGCATTATGCCTCTCCGGCCAGATCAGCAC
* ** *
22000844 CCGCACGCCCGTTTCGTGGGTTGACTCAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
66 CCGCACGCCCATTTCGTGGGTTGACTCAAGCATACAGAGTTCATTCCATGTCTAAGCACCAGCCA
**
22000909 GACAGAGGGTTATGGCAGCGGGACCGAT
131 GACAGAGGGTTACAGCAGCGGGACCGAT
* * * *
22000937 AGCATGCAGAGGGGGGTAGGGCCGATCCCCGGATTGCGCATTATGCCTCTCCGTCCAGCTCAGCA
1 AGCATGCAG-GGGGGATAGGGCCGATCCCCAGATTGCGCATTATGCCTCTCCGGCCAGATCAGCA
* * * * * * *
22001002 CCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTGCCA-GTCTAA-TATCAGA
65 CCCGCACGCCCATTTCGTGGGTTGACTCAAGCATACAGAGTTCATT-CCATGTCTAAGCACCAG-
* * * ** *
22001065 CCAGACTGAGGGTTGCAGCAGCAGGATTGAC
128 CCAGACAGAGGGTTACAGCAGCGGGACCGAT
* * * * * * * * * * * *
22001096 AGCACGCAGGGGAGACT-GGGCCGATTCTC-GACTTGCGTATTTTGGCTCTCCAGTCGGTTAAGC
1 AGCATGCAGGGGGGA-TAGGGCCGATCCCCAGA-TTGCGCATTATGCCTCTCCGGCCAGATCAGC
* * * * * * * **
22001159 GCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
64 ACCCGCACGCCCATTTCGTGGGTTGACTCAAGCATACAGAGTTCATTCCATGTCTAAGCA
22001219 TATGGAGTTC
Statistics
Matches: 222, Mismatches: 53, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
157 5 0.02
158 93 0.42
159 121 0.55
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
AGCATGCAGGGGGGATAGGGCCGATCCCCAGATTGCGCATTATGCCTCTCCGGCCAGATCAGCAC
CCGCACGCCCATTTCGTGGGTTGACTCAAGCATACAGAGTTCATTCCATGTCTAAGCACCAGCCA
GACAGAGGGTTACAGCAGCGGGACCGAT
Found at i:22001226 original size:26 final size:26
Alignment explanation
Indices: 22001190--22001242 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22001180 GTTGGCTTAG
22001190 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
22001216 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
22001242 G
1 G
22001243 ATTGGACAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:22001752 original size:26 final size:26
Alignment explanation
Indices: 22001716--22001785 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
22001706 GTTGGCTTAG
22001716 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
22001742 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
22001768 GCATACGAAGTTCATTCC
1 GCATACGGAGTTCATTCC
22001786 CAGTCAAAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:22001768 original size:526 final size:501
Alignment explanation
Indices: 22000655--22001768 Score: 1150
Period size: 526 Copynumber: 2.2 Consensus size: 501
22000645 TGGTCGGCTG
* * * * *
22000655 AGCGTCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCA-TCCCTAGTCTAAGCAT
1 AGCGCCTGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCAT
22000719 ACGGAGTTCATTCCCAGTCTAAGATTGAACGAGACCGAGGGTTACGACAGTAGCATCGACAGCAT
65 ACGGAGTTCATTCCCAGTCTAAGATTGAACGAGACCGAGGGTTACGACAGTAGCATCGACAGCAT
* *
22000784 GCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTTTCTGGCCAGATGAGCGCCCGCA
130 GCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTTTCTGACCAGATGAGCGCCCGCA
* * *
22000849 CGCCCGTTTCGTGGGTTGACTCAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACAG
195 CGCCCGTTTCGTGGGTTGACTCAAGCATACGAAGTTCATTCCATGCCTAAGCCCCAGCCAGACAG
* *** * * *
22000914 AGGGTTATGGCAGCGGGACCGATAGCATGCAGAGGGGGGTAGGGCCGATCCCCGGATTGCGCATT
260 AGGGCTATGGCAGCAAAACCGATAGCATGCAGAGGAGGGAAAGGCCGATCCCCGGATTGCGCATT
* * ** **
22000979 ATGCCTCTCCGTCCAGCTCAGCACCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTT
325 ATGCCTCTCCGTCCAGCTCAGCACCAGAACACTCATTTCATGGGTTGACTTAGGCATACAGAGTT
* * * * * *
22001044 CATTGCCAGTCTAATATCAGACCAGACTGAGGGTTGCAGCAGCAGGATTGACAGCACGCAGGGGA
390 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAACACACAGGGGA
* * * * * * * *
22001109 GACTGGGCCGATTCTCGACTTGCGTATTTTGGCTCTCCAGTCGGTTA
455 GACTGGGCCGAGTCCCCACTTACGCATTCTGCCTCTCCACTCGGTTA
* * *
22001156 AGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATA
1 AGCGCCTGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
* *
22001221 TGGAGTTCATTCCCAGTCTAAGATTGGAC-AGAACCGAGGGTTGCGACAGCAGGACCAGCAGTAG
66 CGGAGTTCATTCCCAGTCTAAGATTGAACGAG-ACCGAGGGTT-----A-C--G---A-CAGTAG
* ** * *
22001285 GATCGACAGCATGCAAGGGGGGACCGGGCCGATCTTCGGCTTGCGCATTCTGCCTCTTC-GATC-
118 CATCGACAGCATGC-AGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCT-TTCTGACCA
* * * * *
22001348 GACTGAGCGCTCGCACTCTCGTTTCGTGGGTTGGCTCAGGCATACGAAGTTCATTCCATGCCTAA
181 GA-TGAGCGCCCGCACGCCCGTTTCGTGGGTTGACTCAAGCATACGAAGTTCATTCCATGCCTAA
* * * * * *
22001413 GCCCCAGTCAGACCGAGTGCTGTGGCAGCAAAACCGGTAGTGGGATCGACAGCACGCAGAAGGGA
245 GCCCCAGCCAGACAGAGGGCTATGGCAGCAAAACC-G-A-TAGCAT-G-CAG-A-G--G-AGGGA
** ** * * * *
22001478 ACCAGGTTGATCCTTGGCTTGGGCATTATGCCTCTCCGGT-CGGCTCAGCGCCAGAACACTCATT
300 A--AGGCCGATCCCCGGATTGCGCATTATGCCTCTCC-GTCCAGCTCAGCACCAGAACACTCATT
**
22001542 TCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGC
362 TCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
* * * * *
22001607 GGCAGTAGGATCGACAACATACATGGGG-GA-TCGGG-CTAGTCCCCAGCTTATGCATTCTGCCT
427 AGCAGCAGGATCGACAACACACA-GGGGAGACT-GGGCCGAGTCCCCA-CTTACGCATTCTGCC-
* * *
22001669 TTTCGACT-GGTTG
488 TCTCCACTCGGTTA
*
22001682 AGTGCCTGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
1 AGCGCCTGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
22001747 CGGAGTTCATT-CCATGTCTAAG
66 CGGAGTTCATTCCCA-GTCTAAG
22001769 CATACGAAGT
Statistics
Matches: 497, Mismatches: 81, Indels: 45
0.80 0.13 0.07
Matches are distributed among these distances:
500 2 0.00
501 89 0.18
502 4 0.01
506 1 0.00
507 1 0.00
509 1 0.00
512 1 0.00
513 21 0.04
514 119 0.24
515 4 0.01
516 1 0.00
517 4 0.01
518 1 0.00
519 3 0.01
520 1 0.00
521 1 0.00
523 1 0.00
524 4 0.01
525 10 0.02
526 217 0.44
527 11 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (501 bp):
AGCGCCTGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATTGAACGAGACCGAGGGTTACGACAGTAGCATCGACAGCATG
CAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTTTCTGACCAGATGAGCGCCCGCAC
GCCCGTTTCGTGGGTTGACTCAAGCATACGAAGTTCATTCCATGCCTAAGCCCCAGCCAGACAGA
GGGCTATGGCAGCAAAACCGATAGCATGCAGAGGAGGGAAAGGCCGATCCCCGGATTGCGCATTA
TGCCTCTCCGTCCAGCTCAGCACCAGAACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTC
ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAACACACAGGGGAG
ACTGGGCCGAGTCCCCACTTACGCATTCTGCCTCTCCACTCGGTTA
Found at i:22002253 original size:13 final size:13
Alignment explanation
Indices: 22002235--22002260 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22002225 TGCATTATGT
22002235 CTCTCCGACCGAC
1 CTCTCCGACCGAC
22002248 CTCTCCGACCGAC
1 CTCTCCGACCGAC
22002261 TGAGCGCCCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.54, G:0.15, T:0.15
Consensus pattern (13 bp):
CTCTCCGACCGAC
Found at i:22002326 original size:26 final size:26
Alignment explanation
Indices: 22002297--22002346 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
22002287 GTTGACTTAG
22002297 GCATACGGAGTTAATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
* *
22002323 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTAATCCCCAGTCT
22002347 CAGATCGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:22003097 original size:525 final size:520
Alignment explanation
Indices: 22002100--22003190 Score: 1447
Period size: 525 Copynumber: 2.1 Consensus size: 520
22002090 TCGTACGTTA
*
22002100 GTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCGGACTGAGGGTTATGGC
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCGGACTGAGGGTTATGGC
* * * * ** * *
22002165 AGTTGGACCGGTAGCGGGATTGGCAGCACGTAGAGGGGGATCGGGCTGATCCCCGACTTGTGCAT
66 AGCTGGACCGGTACCGAGATCGGCAGCACACAGAGGGGGATCAGGCTAATCCCCGACTTGTGCAT
* * *
22002230 TATGTCTCTCCGACCGACCTCTCCGACCGACTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTT
131 TATATCTCTCCGACCGACCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTT
* * * * *
22002295 AGGCATACGGAGTTAATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTCAGATCGGATCGG
196 AGGCATACGAAGCTAATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* ** * * * *
22002360 ACCGAGGGTTGCGGCAACAGGATCGATAGCATGCAGAGGGGATTGACCGATCCCTGGCTTGCGCT
261 ACCGAGGGTTGCGGCAACAGGATCGACAGCATGCAGAGGGGACGGACCGATCCCCGACTTACGCA
* * *
22002425 TTCTGCCTCTCTAACCGGCTGAGCACCCGTACGCCCGTTTCGTGGCTTAGCTTAGGCATAGGGAG
326 TTCTGCCTCTCCAACCAGCTGAGCACCCGTACGCCCGTTTCGTGGCTTAGCTTACGCATAGGGAG
*
22002490 TTCATTCCATGTCTAAGCCCCAGCAGAACTAAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAG
391 TTCATTCCATGTCTAAGCCCCAGCAGAACTAAGGGTTGTGGCAGCGGGACCGGCAACACGCAGAG
* * * * * * ** *
22002555 GGGGATCGGGTCGATCCCCGACTTGCGTATTATGCCTCTCCGATCCG-TTCAGTGCTTGAACGCT
456 GGAGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGA-CCGACTCAGTGCCCGAACACT
22002619 C
520 C
*
22002620 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA-TCGAGGG
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG--CC-G---GACT-GAGGG
* * * * *
22002684 TTGTGGTAGCTGGACCGGTACCGAGATCGGTAGTACACAGAGGGGGATCAGGCTAATCCCCGGCT
59 TTATGGCAGCTGGACCGGTACCGAGATCGGCAGCACACAGAGGGGGATCAGGCTAATCCCCGACT
* * * * *
22002749 TGT-C-TTATATCTCTCTGACTGGCCTCTCCGGCTGACTGAGCGCCCGCACGCTCATTTCATGGG
124 TGTGCATTATATCTCTCCGACCGACCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCATGGG
*
22002812 TTGACTTAGGCATACGAAGCTCATCCCCAGTCTAAGCATACGGAGTT-ATTTCCCAGTCTAAGAT
189 TTGACTTAGGCATACGAAGCTAATCCCCAGTCTAAGCATACGGAGTTCA-TTCCCAGTCTAAGAT
* * *
22002876 CAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGGGGGGACCGGATCGATCCCCG
253 CAGACCGGACCGAGGGTTGCGGCAACAGGATCGACAGCATGCAGAGGGGA-CGGACCGATCCCCG
** * * *
22002941 ACTTACGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTACG
317 ACTTACGCATTCTGCCTCTCCAACCAGCTGAGCACCCGTACGCCCGTTTCGTGGCTTAGCTTACG
* *
22003006 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGGAACTAAGGGTTGTGGTAGCGGGACCGGCAA
382 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGAACTAAGGGTTGTGGCAGCGGGACCGGCAA
* * *
22003071 CACGCAGAGGGAGACCGAGCCGATCCCCGACTTGCGCATTCTGCGTCTCCGACCGACTGAGTGCC
447 CACGCAGAGGGAGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTCAGTGCC
* *
22003136 CGCACACTT
512 CGAACACTC
* *
22003145 GTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCA-GTCTAAG
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
22003191 AGTTTGAGCC
Statistics
Matches: 493, Mismatches: 67, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
520 44 0.09
522 2 0.00
523 2 0.00
524 157 0.32
525 223 0.45
526 65 0.13
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (520 bp):
GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCGGACTGAGGGTTATGGC
AGCTGGACCGGTACCGAGATCGGCAGCACACAGAGGGGGATCAGGCTAATCCCCGACTTGTGCAT
TATATCTCTCCGACCGACCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTT
AGGCATACGAAGCTAATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
ACCGAGGGTTGCGGCAACAGGATCGACAGCATGCAGAGGGGACGGACCGATCCCCGACTTACGCA
TTCTGCCTCTCCAACCAGCTGAGCACCCGTACGCCCGTTTCGTGGCTTAGCTTACGCATAGGGAG
TTCATTCCATGTCTAAGCCCCAGCAGAACTAAGGGTTGTGGCAGCGGGACCGGCAACACGCAGAG
GGAGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTCAGTGCCCGAACACTC
Found at i:22003909 original size:26 final size:26
Alignment explanation
Indices: 22003873--22003925 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22003863 GTTAACTTAG
22003873 GCATACAGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
*
22003899 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22003925 G
1 G
22003926 ATCAAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22004398 original size:159 final size:156
Alignment explanation
Indices: 22003899--22004400 Score: 480
Period size: 158 Copynumber: 3.2 Consensus size: 156
22003889 TCCAGTCTAA
* * *
22003899 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCGAACCGAGGGTTG-CGATAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCG-ACCGAGGGTTGTAG-CAGCAGGATCGA
* * * * * * * *
22003962 TAGCACACATGAGGGACTGGGCCGATCCCCAGCTTGCGCAATCTGCCTCTCCGGTCGACTGAGCG
63 TAGCACGCAAGGGGGACTGGGCCGATCCCCGGCTTACGCATTCTG-CTCTCCGGTCGGCTAAGCG
* *
22004027 TCCGCACGCCCGTTTCGTGGGTTGGCTTAG
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
22004057 GCATA-GGTAGTTCATTCCATGTCTAAG-CCCGAGCCGGACCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGG-AGTTCATTCCATGTCTAAGATCAGA-CC-GACCGAGGGTTGTAGCAGCAGGATCGA
* * ** * * * *
22004120 TAGCACGTATAGGGGGACCGGGTTGATCCCCGACTTACACATTATTC-CTCCTGG-CTGGCTCAA
63 TAGCACGCA-AGGGGGACTGGGCCGATCCCCGGCTTACGCATTCTGCTCTCC-GGTC-GGCT-AA
* * *
22004183 -CGCTCGCACGCTCGTTTCGTTGGTTGACTTAG
124 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * *
22004215 GCATACAAAGTTCATTCC-TAGTCTAAGATCAGACCAGACTGAGGGTTGTAGCAGCAGGATTGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACC-GACCGAGGGTTGTAGCAGCAGGATCGAT
* *
22004279 AACACGCAGGGGGGACTGGGCCGATCCCCGGCTTACGCATTCTGCATCTCCGGTCGGCTAAGCGC
64 AGCACGCAAGGGGGACTGGGCCGATCCCCGGCTTACGCATTCTGC-TCTCCGGTCGGCTAAGCGC
22004344 CCGCACGCTCGTTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCG-TTTCGTGGGTTGGCTTAG
22004374 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
22004401 CATATGGAGT
Statistics
Matches: 270, Mismatches: 56, Indels: 35
0.75 0.16 0.10
Matches are distributed among these distances:
157 44 0.16
158 151 0.56
159 74 0.27
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGACCGAGGGTTGTAGCAGCAGGATCGATAG
CACGCAAGGGGGACTGGGCCGATCCCCGGCTTACGCATTCTGCTCTCCGGTCGGCTAAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:22004410 original size:26 final size:26
Alignment explanation
Indices: 22004374--22004426 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22004364 GTTGGCTTAG
22004374 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
22004400 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22004426 G
1 G
22004427 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22004614 original size:184 final size:186
Alignment explanation
Indices: 22004223--22004632 Score: 560
Period size: 185 Copynumber: 2.2 Consensus size: 186
22004213 AGGCATACAA
* * * * *
22004223 AGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTG-TAGCAGCAGGATTGACAACACGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGAGCAGCAGGATCGACAACACGCA
* * *
22004287 GGGGGGACTGGGCCGATCCCCGGCTTACGCATTCTGCATCTCCGGTCGGCTAAGCGCCCGCACGC
66 GGGGGGACTAGGCCGATCCCCGGCTTACGCATTCTACATCTCCGCTCGGCTAAGCGCCCGCACGC
*
22004352 TCGTTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGG
131 TCGTTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAG
* * * *
22004408 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGTAGGATCGATAGCACGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGAGCAGCAGGATCGACAACACGCA
* * * * * *
22004472 GGGGGGA-TCAGGTCGGTCCCCGGCTTAGGCATTCTACCTCTTCGACT-GGCTGAGCGCCCGCAC
66 GGGGGGACT-AGGCCGATCCCCGGCTTACGCATTCTACATCTCCG-CTCGGCTAAGCGCCCGCAC
*
22004535 GCTCG-TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTATAG
129 GCTCGTTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAG
** *
22004592 AGTTCATTGTCATTCTAAGATCGGACCAGACCGAGGGTTGC
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
22004633 AGTACCAGGT
Statistics
Matches: 198, Mismatches: 24, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
184 88 0.44
185 108 0.55
186 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (186 bp):
AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGAGCAGCAGGATCGACAACACGCA
GGGGGGACTAGGCCGATCCCCGGCTTACGCATTCTACATCTCCGCTCGGCTAAGCGCCCGCACGC
TCGTTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAG
Found at i:22006066 original size:17 final size:17
Alignment explanation
Indices: 22006028--22006068 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
22006018 TGTTTTACTT
* *
22006028 TTCT-TTTTTTTTTTTC
1 TTCTATTTTTTTATTTA
22006044 TT-TATTTTTTTATTTA
1 TTCTATTTTTTTATTTA
22006060 TTCTATTTT
1 TTCTATTTT
22006069 CGTTAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 1 0.05
16 14 0.67
17 6 0.29
ACGTcount: A:0.10, C:0.07, G:0.00, T:0.83
Consensus pattern (17 bp):
TTCTATTTTTTTATTTA
Found at i:22006234 original size:119 final size:118
Alignment explanation
Indices: 22006096--22006434 Score: 515
Period size: 119 Copynumber: 2.9 Consensus size: 118
22006086 AATTTCCAAA
22006096 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTAAAAAAAA
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTAAAAAAAA
*
22006161 AAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTTC
65 AAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC-AAAGTTTC
* ***
22006216 -GAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCTAAAAAA
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTAAAAAAAAA
* *
22006280 GGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC
66 AGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
22006333 AAAAAAAAATATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCAAAAA
1 --AAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT-AAAAA
* *
22006397 AATAA--TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
62 AAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
22006435 CTACACAAGA
Statistics
Matches: 200, Mismatches: 14, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
117 7 0.04
118 55 0.28
119 81 0.41
120 52 0.26
121 5 0.03
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (118 bp):
AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTAAAAAAAAA
AGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
Found at i:22006250 original size:59 final size:57
Alignment explanation
Indices: 22006097--22006434 Score: 421
Period size: 59 Copynumber: 5.7 Consensus size: 57
22006087 ATTTCCAAAA
**
22006097 AAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTAA
1 AAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTC
* *
22006155 AAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTTC
1 AAAAAATA--TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT--AAATTTTC
*
22006216 GAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
** ** *
22006273 TAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC
1 -AAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTC
22006333 AAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTC
1 ---AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*
22006392 AAAAAAATAATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 -AAAAAAT-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
22006435 CTACACAAGA
Statistics
Matches: 249, Mismatches: 19, Indels: 24
0.85 0.07 0.08
Matches are distributed among these distances:
57 16 0.06
58 46 0.18
59 79 0.32
60 49 0.20
61 53 0.21
62 6 0.02
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (57 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:22006415 original size:178 final size:177
Alignment explanation
Indices: 22006112--22006434 Score: 515
Period size: 178 Copynumber: 1.8 Consensus size: 177
22006102 ATATTTTTAG
*
22006112 GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTAAAAAAAAAAGGTTTTTGAGGAAA
1 GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTAAAAAAAAAAGATTTTTGAGGAAA
* *
22006177 AGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTTCGAAAAATATTTTTAGGGAAAAGTTGA
66 AGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTTCAAAAAATATTTTTAGGGAAAAGTTGA
22006242 AAGTATCAATTTTCCTTAAAAATAAATTTTCTAAAAAAGGGTTTTTGA
130 AAGTATCAATTTTCCTTAAAAATAAATTTTCTAAAAAAGGGTTTTTGA
** * * *
22006290 GGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAAAAAAAATATTTTTGAGGAA
1 GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTAAAAAAAAAAGATTTTTGAGGAA
*
22006355 AAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTTCAAAAAAATAATTTTTGGGGAAAAGTT
65 AAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTTC-AAAAAAT-ATTTTTAGGGAAAAGTT
22006418 GAAAGTATCAATTTTCC
128 GAAAGTATCAATTTTCC
22006435 CTACACAAGA
Statistics
Matches: 133, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
176 4 0.03
177 9 0.07
178 65 0.49
179 55 0.41
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (177 bp):
GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTAAAAAAAAAAGATTTTTGAGGAAA
AGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTTCAAAAAATATTTTTAGGGAAAAGTTGAA
AGTATCAATTTTCCTTAAAAATAAATTTTCTAAAAAAGGGTTTTTGA
Found at i:22010590 original size:26 final size:26
Alignment explanation
Indices: 22010561--22010610 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
22010551 CCGATCCGAT
22010561 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22010587 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
22010611 CGCCTAAGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22010971 original size:26 final size:26
Alignment explanation
Indices: 22010942--22010994 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
22010932 CCGGTCCAAT
22010942 CTTACACA-GGTAACAAACTCCGTATG
1 CTTACACATGG-AACAAACTCCGTATG
* **
22010968 CTTAGACATGGAATGAACTCCGTATG
1 CTTACACATGGAACAAACTCCGTATG
22010994 C
1 C
22010995 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
CTTACACATGGAACAAACTCCGTATG
Found at i:22011268 original size:158 final size:156
Alignment explanation
Indices: 22010968--22011544 Score: 450
Period size: 159 Copynumber: 3.6 Consensus size: 156
22010958 ACTCCGTATG
* * * ** *
22010968 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGTTCAG
1 CTTAGACTA-GGAATGAACT-TGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGAG
* * ** * * * ** *
22011032 TCGGGCGGAGAGAAAAAATGCGTAAGCCGGGGATCGACCCGGTTCCC-CA-TG-TATGCTATCGA
64 -CCGGCCGAGAGGCATAATGCGCAAGCCGGGGATCGGCCC-AATCCCTCACTGCGA-GCTATCGA
* *** *
22011094 TCCTACTGCTGTAACCCTCGATCCGATCTGAT
126 TCCCACTGCCACAACCCTCGGTCC-ATCTGAT
* * * *
22011126 CTTTGACTGGGAATGAACTATGTATGCCTAAGTCAACCAACGAAATGAGCATGCGGGCACTGAGC
1 CTTAGACTAGGAATGAACT-TGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGAGC
** * *
22011191 CGGCCGAGAGGCATAATGCGCAAGCCAAGGATCGGCCCGA-CCC-CATTCT-CTGAGCTATCGGT
65 CGGCCGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCAATCCCTCA--CTGC-GAGCTATCGAT
* **
22011253 CCCACTGCCACAACCCTCGGTCCAGCTGGGG
127 CCCACTGCCACAACCCTCGGTCCATCT-GAT
* * ** * * *
22011284 CTTAGACTTA-GAATGAACTCTCTATGCCTAAGCCAACCCATTAAACGGGCATACGGGCACTCAG
1 CTTAGAC-TAGGAATGAACT-TGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGAG
* * * * * *
22011348 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCAATCCCTCACTGCGTGCTGTCGATC
64 CCGG-CCGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCAATCCCTCACTGCGAGCTATCGATC
** ** * *
22011413 CTGCTGCTGCAACCCTAGGTCCAGTCCGAT
128 CCACTGCCACAACCCTCGGTCCA-TCTGAT
* * **
22011443 CTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTGAGC
1 CTTAGACTAGGAATGAACTT-GTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGAGC
22011508 CGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGGC
65 CGGCCG-AGAGGCATAATGCGCAAGCCGGGGATCGGC
22011545 TTGTCCTCCT
Statistics
Matches: 327, Mismatches: 76, Indels: 31
0.75 0.18 0.07
Matches are distributed among these distances:
155 5 0.02
156 1 0.00
157 33 0.10
158 139 0.43
159 142 0.43
160 5 0.02
161 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.19
Consensus pattern (156 bp):
CTTAGACTAGGAATGAACTTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGAGCC
GGCCGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCAATCCCTCACTGCGAGCTATCGATCCCA
CTGCCACAACCCTCGGTCCATCTGAT
Found at i:22011434 original size:159 final size:156
Alignment explanation
Indices: 22011136--22011649 Score: 396
Period size: 159 Copynumber: 3.3 Consensus size: 156
22011126 CTTTGACTGG
* * * * * * * *
22011136 GAATGAACTATGTATGCCTAAGTCAACCAACGAAATGAGCATGCGGGCACTGAGCCGGCCG-AGA
1 GAATGAACTCTCTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCACTCAGCCGGCCGAAGA
* ** ** * ** * *
22011200 GGCATAATGCGCAAGCCAAGGATCGGCCCGA-CC-CCATTCT-CTGAGCTATCGGTCCCACTGCC
66 GGCAGAATGCGCAAGCCGGGGATCGG-CTAATCCTCCA--CTGC-GTGCTGCCGATCCCAC-ACC
*
22011262 ACAACCCTCGGTCCAGCTGGGGCTTAGACTTA
126 ACAACCCTAGGTCCAGCTGGGGCTTAGAC-TA
* * * *
22011294 GAATGAACTCTCTATGCCTAAGCCAACCCATTAAACGGGCATACGGGCACTCAGCCGGTCGGAGA
1 GAATGAACTCTCTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCACTCAGCCGGCCGAAGA
* * ** * **
22011359 GGCAGAATGCGCAAGCTGGGGATCGGCTCAATCC-CTCACTGCGTGCTGTCGATCCTGCTGCTGC
66 GGCAGAATGCGCAAGCCGGGGATCGGCT-AATCCTC-CACTGCGTGCTGCCGATCCCAC-ACCAC
* **
22011423 AACCCTAGGTCCAG-TCCGATCTTAGACTA
128 AACCCTAGGTCCAGCT-GGGGCTTAGACTA
* * * ** ** *
22011452 GGAATGAACT-TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTGAGCCGGCCGAA
1 -GAATGAACTCTC-TATGCCTAAGCCAACCCATGAAACGAGCATACGGGCACTCAGCCGGCCGAA
* ** *
22011516 GAGGCATAATGCGCAAGCCGGGGATCGGCTTGTCCTCCTCTGCGTGCTGCCGATCCCACACCACA
64 GAGGCAGAATGCGCAAGCCGGGGATCGGCTAATCCTCCACTGCGTGCTGCCGATCCCACACCACA
* * *
22011581 ACCCTCA-GTCCGGCTGGGGCTTGGACATG
129 ACCCT-AGGTCCAGCTGGGGCTTAGAC-TA
* *
22011610 GAATGAACTCCCTATGCGTAAGCCAACCCATGAAACGAGC
1 GAATGAACTCTCTATGCCTAAGCCAACCCATGAAACGAGC
22011650 GTGCGGGCTA
Statistics
Matches: 282, Mismatches: 61, Indels: 27
0.76 0.16 0.07
Matches are distributed among these distances:
157 54 0.19
158 81 0.29
159 141 0.50
160 4 0.01
161 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (156 bp):
GAATGAACTCTCTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCACTCAGCCGGCCGAAGA
GGCAGAATGCGCAAGCCGGGGATCGGCTAATCCTCCACTGCGTGCTGCCGATCCCACACCACAAC
CCTAGGTCCAGCTGGGGCTTAGACTA
Found at i:22011582 original size:316 final size:314
Alignment explanation
Indices: 22010967--22011649 Score: 793
Period size: 316 Copynumber: 2.2 Consensus size: 314
22010957 AACTCCGTAT
* **
22010967 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCATGAAACGAGCATACGGGCACTCAG
* * ** *
22011032 TCGGGCGGAGAGAAAAAATGCGTAAGCCGGGGATCGACCCGGTTCCCCATGTATGCTATCGATCC
65 CCGGGCGGAGAGAAAAAATGCGCAAGCCGGGGATCGACCCGAATCCCCATGCATGCTATCGATCC
* * * * *
22011097 TACTGCTGTAACCCTCGATCCGATCTGATCTTTGACTGGGAATGAACTATGTATGCCTAAGTCAA
130 TACTGCTGCAACCCTAGATCCGATCCGATCTTAGACTAGGAATGAACTATGTATGCCTAAGTCAA
*
22011162 CCAACGAAATGAGCATGCGGGCACTGAGCCGGCCGAGAGGCATAATGCGCAAGCCAAGGATCGGC
195 CCAACGAAACGAGCATGCGGGCACTGAGCCGGCCGAGAGGCATAATGCGCAAGCCAAGGATCGGC
* * * *
22011227 CCGACCCCATTCTCTGAGCTATCGGTCCCACTGCCACAACCCTCGGTCCAGCTGGG
260 CCGACCCCA-TCTCTGAGCTACCGATCCCACTACCACAACCCTCAGTCCAGCTGGG
* * * *
22011283 GCTTAGACTTAGAATGAACTCTCTATGCCTAAGCCAACCCATTAAACGGGCATACGGGCACTCAG
1 GCTTAGACATGGAATGAACTC-CTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCACTCAG
* ** * * * * * *
22011348 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTC-AATCCCTCACTGCGTGCTGTCGAT
65 CCGGGCGGAGAGAAAAAATGCGCAAGCCGGGGATCGACCCGAATCCC-CA-TGCATGCTATCGAT
* *
22011412 CCTGCTGCTGCAACCCTAGGTCC-AGTCCGATCTTAGACTAGGAATGAACT-TCGTATGCCTAAG
128 CCTACTGCTGCAACCCTAGATCCGA-TCCGATCTTAGACTAGGAATGAACTAT-GTATGCCTAAG
* * * ** **
22011475 TCAACCCACGAAACGAGCGTGTGGGTGCTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGA
191 TCAACCAACGAAACGAGCATGCGGGCACTGAGCCGGCCG-AGAGGCATAATGCGCAAGCCAAGGA
** * * * *
22011540 TCGGCTTGTCCTCC-TCTGC-GTGCTGCCGATCCCAC-ACCACAACCCTCAGTCCGGCTGGG
255 TCGGCCCGACC-CCATCT-CTGAGCTACCGATCCCACTACCACAACCCTCAGTCCAGCTGGG
* *
22011599 GCTTGGACATGGAATGAACTCCCTATGCGTAAGCCAACCCATGAAACGAGC
1 GCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCATGAAACGAGC
22011650 GTGCGGGCTA
Statistics
Matches: 306, Mismatches: 52, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
315 4 0.01
316 155 0.51
317 113 0.37
318 32 0.10
319 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (314 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCACTCAGC
CGGGCGGAGAGAAAAAATGCGCAAGCCGGGGATCGACCCGAATCCCCATGCATGCTATCGATCCT
ACTGCTGCAACCCTAGATCCGATCCGATCTTAGACTAGGAATGAACTATGTATGCCTAAGTCAAC
CAACGAAACGAGCATGCGGGCACTGAGCCGGCCGAGAGGCATAATGCGCAAGCCAAGGATCGGCC
CGACCCCATCTCTGAGCTACCGATCCCACTACCACAACCCTCAGTCCAGCTGGG
Found at i:22011648 original size:157 final size:155
Alignment explanation
Indices: 22010967--22011657 Score: 478
Period size: 158 Copynumber: 4.4 Consensus size: 155
22010957 AACTCCGTAT
* * ** *
22010967 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGTTCAG
1 GCTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAG
* * ** * * * ** * ** *
22011032 TCGGGCGGAGAGAAAAAATGCGTAAGCCGGGGATCGACCCGGTTCCCC-ATGTATGCTATCGATC
65 -CCGGCCGAGAGGCATAATGCGCAAGCCGGGGATCG-GCTAG-TCCCCTCTGCGTGCTGTCGATC
* *** * *
22011096 CTACTGCTGTAACCCTC-GATCCGATCT-GA
127 CCACTGCCACAACCCTCAG-TCC-AGCTGGG
* * *** * * * * *
22011125 TCTTTGACTGGGAATGAACTATGTATGCCTAAGTCAACCAACGAAATGAGCATGCGGGCACTGAG
1 GCTTAGACT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAG
** ** * * * *
22011190 CCGGCCGAGAGGCATAATGCGCAAGCCAAGGATCGGCCCGACCCCATTCT-CTGAGCTATCGGTC
65 CCGGCCGAGAGGCATAATGCGCAAGCCGGGGATCGGCTAGTCCCC--TCTGC-GTGCTGTCGATC
*
22011254 CCACTGCCACAACCCTCGGTCCAGCTGGG
127 CCACTGCCACAACCCTCAGTCCAGCTGGG
* * * * * * *
22011283 GCTTAGACTTAGAATGAACTCTCTATGCCTAAGCCAACCCATTAAACGGGCATACGGGCACTCAG
1 GCTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAG
* * * * *
22011348 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCAATCCCTCACTGCGTGCTGTCGATC
65 CCGG-CCGAGAGGCATAATGCGCAAGCCGGGGATCGGCT-AGTCCC-CTCTGCGTGCTGTCGATC
** ** * *
22011413 CTGCTGCTGCAACCCT-AGGTCCAG-TCCGA
127 CCACTGCCACAACCCTCA-GTCCAGCT-GGG
* * * * * * **
22011442 TCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTGAG
1 GCTTAGACT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAG
* *
22011507 CCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCTTGTCCTCCTCTGCGTGCTGCCGATCC
65 CCGGCCG-AGAGGCATAATGCGCAAGCCGGGGATCGGCTAGTCC-CCTCTGCGTGCTGTCGATCC
* *
22011572 CAC-ACCACAACCCTCAGTCCGGCTGGG
128 CACTGCCACAACCCTCAGTCCAGCTGGG
* *
22011599 GCTTGGACATGGAATGAACTCCCTATGCGTAAGCCAACCCATGAAACGAGCGTGCGGGC
1 GCTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGC
22011658 TATCGATCTT
Statistics
Matches: 408, Mismatches: 105, Indels: 41
0.74 0.19 0.07
Matches are distributed among these distances:
155 4 0.01
156 3 0.01
157 93 0.23
158 161 0.39
159 142 0.35
160 4 0.01
161 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (155 bp):
GCTTAGACTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAGC
CGGCCGAGAGGCATAATGCGCAAGCCGGGGATCGGCTAGTCCCCTCTGCGTGCTGTCGATCCCAC
TGCCACAACCCTCAGTCCAGCTGGG
Found at i:22012394 original size:26 final size:26
Alignment explanation
Indices: 22012365--22012417 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22012355 CCGATTCGAT
*
22012365 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22012391 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22012417 C
1 C
22012418 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22013798 original size:26 final size:26
Alignment explanation
Indices: 22013769--22013821 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22013759 CCAGTCCGAT
22013769 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGACTAGGG-ATGAACTCCATATG
*
22013795 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCATATG
22013821 C
1 C
22013822 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:22014908 original size:26 final size:26
Alignment explanation
Indices: 22014870--22014922 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22014860 CTAGTCCAAT
*
22014870 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22014896 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22014922 C
1 C
22014923 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22014976 original size:186 final size:183
Alignment explanation
Indices: 22014486--22015129 Score: 569
Period size: 186 Copynumber: 3.4 Consensus size: 183
22014476 GTGGCTCAAA
* * * * *
22014486 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTGTGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCGAAGTCAAC
* * * * * * *
22014551 CCACGAAACGAGCGTGCGGGTGCA-CAGCCGATCAG-AGAGGCAGAATACGCAATCCGGGGATCG
66 CCACGAAACGAGCGTAC-GG-GCACCAGCC-AGCCGAAAAGGCAGAATGCGCAAGCCGGGGACCG
*** * * * * ** * * *
22014614 ACCTGGTCCTCCCTGCGTGCTACCAATCCTGCTGCTGGTCCTGCTATCGTAACCCTCGATTTGGT
128 ACCCAAT-C-CCC--C---CTA-C-ATGCTG-T-C-GATCCTACTACCCCAACCCTCGGTCTAGT
22014679 CCG
181 CCG
* * * *
22014682 ATCTTAGATTGGGAATGAA-TAGTGTACGCTTAGACATGGAATGAACTCTGTATGCCGAAGTCGA
1 ATCTTAGACTGGGAATGAACT-CTGTATGCTTAGACATGGAATGAACTCTGTATGCCGAAGTCAA
*
22014746 CCCACGAAAGGAGCGTACGGGCACTCAGCCAGCCGAAAAGGCAGAATGCGCAAGCCGGGGGACCG
65 CCCACGAAACGAGCGTACGGGCAC-CAGCCAGCCGAAAAGGCAGAATGCGCAAGCC-GGGGACCG
* * * * * * *
22014811 ACTCGATCCCTCCCTGCGTGCTGTCGATCCTGCTGCCCCAACCCTCGGTCTAGTCCA
128 ACCCAATCCC-CCCTACATGCTGTCGATCCTACTACCCCAACCCTCGGTCTAGTCCG
* * *
22014868 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCGAAGTCAAC
* * * * * * *
22014933 CCACGAAATGAGCGTGCAGGTGCA-CAGCC-GACTGGAGAGGCAGAATGCGTAAGCCGGGGATCG
66 CCACGAAACGAGCGTAC-GG-GCACCAGCCAG-CCGAAAAGGCAGAATGCGCAAGCCGGGGACCG
* * * * *
22014996 ACCCAATCCCCCCTACATGCTGTCGATCCTACTATCGCAACGCTCGGTCTGGTCTG
128 ACCCAATCCCCCCTACATGCTGTCGATCCTACTACCCCAACCCTCGGTCTAGTCCG
* * *
22015052 ATCTTAGACTAGGAATGAACCCCGTATGCTTAGACATGGAATGAACTCTGTATGCCGAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCGAAGTCAAC
22015117 CCACGAAACGAGC
66 CCACGAAACGAGC
22015130 ATGCGGGCGC
Statistics
Matches: 373, Mismatches: 65, Indels: 32
0.79 0.14 0.07
Matches are distributed among these distances:
184 107 0.29
185 16 0.04
186 119 0.32
187 4 0.01
188 4 0.01
189 4 0.01
190 1 0.00
191 2 0.01
194 4 0.01
195 8 0.02
196 93 0.25
197 11 0.03
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.20
Consensus pattern (183 bp):
ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCGAAGTCAAC
CCACGAAACGAGCGTACGGGCACCAGCCAGCCGAAAAGGCAGAATGCGCAAGCCGGGGACCGACC
CAATCCCCCCTACATGCTGTCGATCCTACTACCCCAACCCTCGGTCTAGTCCG
Found at i:22015092 original size:26 final size:26
Alignment explanation
Indices: 22015054--22015106 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22015044 CTGGTCTGAT
22015054 CTTAGACTAGGAATGAACCCCGTATG
1 CTTAGACTAGGAATGAACCCCGTATG
* *
22015080 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACCCCGTATG
22015106 C
1 C
22015107 CGAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCCGTATG
Found at i:22015555 original size:26 final size:26
Alignment explanation
Indices: 22015514--22015567 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
22015504 GTTTCGATCT
22015514 TAGACTGGGAACGAACTCCCTATGCC
1 TAGACTGGGAACGAACTCCCTATGCC
* * *
22015540 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAACGAACTCCCTATGCC
22015566 TA
1 TA
22015568 ACTCAATCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.22
Consensus pattern (26 bp):
TAGACTGGGAACGAACTCCCTATGCC
Found at i:22016292 original size:26 final size:26
Alignment explanation
Indices: 22016234--22016311 Score: 99
Period size: 26 Copynumber: 3.0 Consensus size: 26
22016224 GGGTCAAAAT
22016234 CTTAGAC-TGGGAATGCAA-TCC-TATG
1 CTTAGACAT-GGAATG-AACTCCGTATG
22016259 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
* *
22016285 CTTGGACATGAAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
22016311 C
1 C
22016312 CTAAGCCAAC
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
24 2 0.04
25 16 0.33
26 30 0.62
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22016800 original size:26 final size:26
Alignment explanation
Indices: 22016761--22016864 Score: 181
Period size: 26 Copynumber: 4.0 Consensus size: 26
22016751 TAGTCTGATT
22016761 TTAGACTTGGGATGAACTCCGTATGC
1 TTAGACTTGGGATGAACTCCGTATGC
*
22016787 TTAGACTTGCGATGAACTCCGTATGC
1 TTAGACTTGGGATGAACTCCGTATGC
*
22016813 TTAGACTTGGGATGAACTTCGTATGC
1 TTAGACTTGGGATGAACTCCGTATGC
*
22016839 TTATACTTGGGATGAACTCCGTATGC
1 TTAGACTTGGGATGAACTCCGTATGC
22016865 CCAAGTCAAC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (26 bp):
TTAGACTTGGGATGAACTCCGTATGC
Found at i:22017195 original size:26 final size:25
Alignment explanation
Indices: 22017166--22017216 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
22017156 CCGGTCTGAT
22017166 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAA-TCCGTATG
22017192 CTTAGACATGGAATGAATCCGTATG
1 CTTAGACATGGAATGAATCCGTATG
22017217 GCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 8 0.33
26 15 0.62
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACATGGAATGAATCCGTATG
Found at i:22017767 original size:314 final size:315
Alignment explanation
Indices: 22017290--22017996 Score: 855
Period size: 314 Copynumber: 2.2 Consensus size: 315
22017280 ACAAGCCTGA
* * * * *
22017290 TCCCCCCTGTGTGCTGTCGATCATGCTACCGCAACCTTTGGTCCGGTCCAATCTTATACTGGGAA
1 TCCCCCCTGCGTGCTGTCGATC-CGCTATCGCAACCCTTGGTCC-GTCCAATCTTAAACTGGGAA
* * * * * *
22017355 TAAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCCAGCGCTGAGCCAGCCGTAGAGGC
64 TGAACTCCGTATGCATAAGTCAACCCAAGAAACGAGCGTACCAGCGCTGAGCCAGCCGAAGAGGC
* * * * * * *
22017420 ATAATGTGTAAGCCAAGGATCAGCCTGGTCCCCCTCTGCGTGCT-GTCGGTCCTGCTACCACAA-
129 ATAATGCGTAAGCCAAGGATCAGCCCGGTCCCCCTCTACGTGCTACT-AGTCCCGCTACCAAAAC
* *
22017483 CCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
193 CCTCGATCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGG
* * *
22017548 GCGTACGGGTGCTCAACCGG-TCGGAGAGGCAGAAT-CGCAAGCAGGGGATCGACCCGG
258 GCATACGGGCGCTCAACCGGCT-GGAGAGGCAGAATGCGCAAGCAGGGGATCGACCCAG
* * * * * *
22017605 TCCCCCCTGCGTGCTATCGATCCGCTATTGCAACCCTCGGTCCGATCCTATCTTAGACCGGGAAT
1 TCCCCCCTGCGTGCTGTCGATCCGCTATCGCAACCCTTGGTCCG-TCCAATCTTAAACTGGGAAT
* ** * **
22017670 GAACTCCGTATGCATAAGTCTACCCAAGAAACGAGCGTACGGGCGTTGAGCTGGCCGAAGAGGCA
65 GAACTCCGTATGCATAAGTCAACCCAAGAAACGAGCGTACCAGCGCTGAGCCAGCCGAAGAGGCA
* * *
22017735 TAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCTCTACGTGCTACTAGTCCCGCTGCCAAAACCC
130 TAATGCGTAAGCCAAGGATCAGCCCGGTCCCCCTCTACGTGCTACTAGTCCCGCTACCAAAACCC
* * * *
22017800 TCGATCTGGTTTGGGCTTAGACTTGGAATGAACTTCCTATGCCTAAGCCAACCCACGAAAAGGGC
195 TCGATCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGGGC
* * * * * *
22017865 ATACGGGCGTTCAGCCGGCTGGAGGGGCAGAATGTGCAAGCCGGGGATCGGCCCAG
260 ATACGGGCGCTCAACCGGCTGGAGAGGCAGAATGCGCAAGCAGGGGATCGACCCAG
* * * *
22017921 TCCCCCCTGCGTGCTGTCAATCCTACTGTCGCAACCCTTGGTCCTGTCCGATCTTAAACTGGGAA
1 TCCCCCCTGCGTGCTGTCGATCC-GCTATCGCAACCCTTGGTCC-GTCCAATCTTAAACTGGGAA
22017986 TGAACTCCGTA
64 TGAACTCCGTA
22017997 CGCTTAGACT
Statistics
Matches: 329, Mismatches: 56, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
313 1 0.00
314 136 0.41
315 108 0.33
316 40 0.12
317 43 0.13
318 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.21
Consensus pattern (315 bp):
TCCCCCCTGCGTGCTGTCGATCCGCTATCGCAACCCTTGGTCCGTCCAATCTTAAACTGGGAATG
AACTCCGTATGCATAAGTCAACCCAAGAAACGAGCGTACCAGCGCTGAGCCAGCCGAAGAGGCAT
AATGCGTAAGCCAAGGATCAGCCCGGTCCCCCTCTACGTGCTACTAGTCCCGCTACCAAAACCCT
CGATCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGGGCA
TACGGGCGCTCAACCGGCTGGAGAGGCAGAATGCGCAAGCAGGGGATCGACCCAG
Found at i:22017841 original size:159 final size:157
Alignment explanation
Indices: 22017364--22017935 Score: 497
Period size: 159 Copynumber: 3.6 Consensus size: 157
22017354 ATAAACTCTG
* * ** * * * * * *
22017364 TATGCCTAAGTCAACCCACGAAACGAGCGTGCCAGCGCTGAGCCAGCCGTAGAGGCATAATGTGT
1 TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGC
* * * * * *
22017429 AAGCCAAGGATCAGCCTGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTACCACAA-CCTCGGTCTG
66 AAGCCGAGGATCGGCCCGGTCCCCC-CTGCGTGCTAT-AGTCCCGCTACCACAACCCTCGGTCTG
* * *
22017493 GCTAGGGCTTAGACATGGAATGAACTCCC
129 GTTTGGGCTTAGACATGGAATGAACTTCC
* * * *
22017522 TATGCCTAAGCCAACCCACGAAACGGGCGTACGGGTGCTCAACCGGTCGGAGAGGCAGAAT-CGC
1 TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGC
* * * * *** * *
22017586 AAGCAGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGAT-CCGCTATTGCAACCCTCGGTCCGA
66 AAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTATAG-TCCCGCTACCACAACCCTCGGTCTGG
* ** **
22017650 TCCT-ATCTTAGACCGGGAATGAAC-TCC
130 T-TTGGGCTTAGACATGGAATGAACTTCC
* * * * * * * * *
22017677 GTATGCATAAGTCTACCCAAGAAACGAGCGTACGGGCGTTGAGCTGGCCGAAGAGGCATAATGCG
1 -TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCG
* * * * *
22017742 TAAGCCGAGGATCGGCCCGGTCCCCCTCTACGTGCTACTAGTCCCGCTGCCAAAACCCTCGATCT
65 CAAGCCGAGGATCGGCCCGGTCCCCC-CTGCGTGCTA-TAGTCCCGCTACCACAACCCTCGGTCT
*
22017807 GGTTTGGGCTTAGACTTGGAATGAACTTCC
128 GGTTTGGGCTTAGACATGGAATGAACTTCC
* * * * * * *
22017837 TATGCCTAAGCCAACCCACGAAAAGGGCATACGGGCGTTCAGCCGGCTGGAGGGGCAGAATGTGC
1 TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGC
* *
22017902 AAGCCGGGGATCGGCCCAGTCCCCCCTGCGTGCT
66 AAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCT
22017936 GTCAATCCTA
Statistics
Matches: 318, Mismatches: 86, Indels: 20
0.75 0.20 0.05
Matches are distributed among these distances:
155 11 0.03
156 84 0.26
157 44 0.14
158 68 0.21
159 108 0.34
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGC
AAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTATAGTCCCGCTACCACAACCCTCGGTCTGGT
TTGGGCTTAGACATGGAATGAACTTCC
Found at i:22018310 original size:170 final size:170
Alignment explanation
Indices: 22017998--22018324 Score: 365
Period size: 170 Copynumber: 1.9 Consensus size: 170
22017988 AACTCCGTAC
* * * * *
22017998 GCTTAGACTGGGGATGAACTTTGTATGCCTAAGTCAACCCACGAAACAAGCGTCCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAA
* * * * *
22018063 TCAGTCGGAGAGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCT
66 CCAGCCGAAGAGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGCCGATCT
* *
22018128 CACTGTTGGTCCTGCTACCACAACCCTGGGTCTGGCTGAG
131 CACTGCTGGTCCTACTACCACAACCCTGGGTCTGGCTGAG
** *
22018168 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGTGTACGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCA
* * * * * * *
22018232 ACCGGCCTAAGAGGGAGAATGCGCAAGCCGGGGA-CTGGCTCGGT-CCCCTCTACGTGCTGTCGA
65 ACCAGCCGAAGA-GCAGAATGCGCAAGCCGGGGATC-AGCCCGATCCCCCTCTACGTGCTGCCGA
* * *
22018295 TC-CTGCTGCTGGTCCTACTGCCGCAACCCT
128 TCTC-ACTGCTGGTCCTACTACCACAACCCT
22018325 CAGTCTGGTC
Statistics
Matches: 128, Mismatches: 25, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
169 1 0.01
170 102 0.80
171 25 0.20
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (170 bp):
GCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAA
CCAGCCGAAGAGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGCCGATCT
CACTGCTGGTCCTACTACCACAACCCTGGGTCTGGCTGAG
Found at i:22018818 original size:26 final size:26
Alignment explanation
Indices: 22018777--22018829 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22018767 CCATTTTGAT
22018777 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
22018803 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22018829 C
1 C
22018830 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22019847 original size:26 final size:26
Alignment explanation
Indices: 22019811--22019863 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22019801 CCAGTTCGAT
*
22019811 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22019837 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22019863 C
1 C
22019864 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22019930 original size:184 final size:185
Alignment explanation
Indices: 22019606--22019961 Score: 466
Period size: 184 Copynumber: 1.9 Consensus size: 185
22019596 CTTACTACCA
22019606 CAACCCTCGGTCCGATCTGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAGTGAAC
1 CAACCCTCGGTCCGATCTGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAGTGAAC
* ** * * * *
22019671 TCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGTTCAGCCAAATGAAGAGGCAGAAT
66 TCCCTATGCATAAGCCAACCCACGAAACGACCATACGGGCGCTCAGCCAAACGAAGAAGCAGAAT
*
22019736 GCGTAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTGCCGATTATGCTGCCG
131 GCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATTATGCTGCCG
* * * *
22019790 CAACCCTCGGTCCAGTTC-GATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC-TGGGGATGA
1 CAACCCTCGGTCC-GATCTGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAG-TGA
* * * * * * ** *
22019853 ACTCCGTATGCATAAGTCAACCCACGAAACGACCGTACGGGTGCTGAGTCAGCCGAAGAAGCATA
64 ACTCCCTATGCATAAGCCAACCCACGAAACGACCATACGGGCGCTCAGCCAAACGAAGAAGCAGA
* *
22019918 ATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGTGTGCTGCC
129 ATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCC
22019962 AGTCCCGCTA
Statistics
Matches: 146, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
183 4 0.03
184 128 0.88
185 14 0.10
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (185 bp):
CAACCCTCGGTCCGATCTGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAGTGAAC
TCCCTATGCATAAGCCAACCCACGAAACGACCATACGGGCGCTCAGCCAAACGAAGAAGCAGAAT
GCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATTATGCTGCCG
Found at i:22021922 original size:159 final size:158
Alignment explanation
Indices: 22021538--22022000 Score: 466
Period size: 158 Copynumber: 2.9 Consensus size: 158
22021528 CCTGTTGCCG
* *
22021538 CAACCCTCGGTCCGACTGGGACTTAGACATGGAATTAACTCCATATGCCTAAGCCAACCCACGAA
1 CAACCCTCGGTCCGATTGGGACTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAA
* * * * **
22021603 ACGAGCGTGCGGGAGCTCAGCCGACCAGAGAGGTAGAATGCGCAAGCCGGGGATTGGCCCGATCC
66 ACGAGCGTACGGGAGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCC
* ** *
22021668 CCCCTACGTGCTATCGATCTTACTAGCG
131 CCCCTACGTGCTACCGATCCCACTAGCA
*** ** * ** * *
22021696 CAACCCTTAATCCGA-TCCGATCTTATAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCTACG
1 CAACCCTCGGTCCGATTGGGA-CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACG
* * * * **
22021759 AAACGAGCGTACGGGCGCTGAGCCGATCGGAGAGGCATAATACGCAAGCCGGGGATCAGTTCGAT
64 AAACGAGCGTACGGGAGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGAT
* * *
22021824 CCCCCTCTTCGTGCTGCCGGTCCCA-TAGCCA
129 CCCCC-CTACGTGCTACCGATCCCACTAG-CA
* * *
22021855 CAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAA
1 CAACCCTCGGTCCGATTGGGACTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAA
* * * * * * *
22021920 ACG-GACGTACAGGTGCTCAGCCGGTCGGAGAGGCAGAATGTGCAAGCTGGGGATCGGCCTGATC
66 ACGAG-CGTACGGGAGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATC
**
22021984 CCCCCTGTGTGCTACCG
130 CCCCCTACGTGCTACCG
22022001 GTCCTACTGC
Statistics
Matches: 241, Mismatches: 57, Indels: 14
0.77 0.18 0.04
Matches are distributed among these distances:
157 4 0.02
158 118 0.49
159 116 0.48
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CAACCCTCGGTCCGATTGGGACTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAA
ACGAGCGTACGGGAGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCC
CCCCTACGTGCTACCGATCCCACTAGCA
Found at i:22022795 original size:26 final size:26
Alignment explanation
Indices: 22022757--22022809 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22022747 GGCTCAAAAT
22022757 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22022783 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22022809 C
1 C
22022810 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22023110 original size:196 final size:196
Alignment explanation
Indices: 22022755--22023111 Score: 502
Period size: 196 Copynumber: 1.8 Consensus size: 196
22022745 GTGGCTCAAA
*
22022755 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTGAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
22022820 CCACGAAACGAGCTTGCAGGAGCTCATCCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGC
66 CCACAAAACGAGCATACAGGAGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGC
* *
22022885 CTGGTCCCCCTTACGTGCTGCCAATCCTGCTGCTGGTCCTACTATCGTAACCCTCGATCCAGTCA
131 CTGATCCCCCCTACGTGCTGCCAATCCTGCTGCTGGTCCTACTATCGTAACCCTCGATCCAGTCA
22022950 G
196 G
* * *
22022951 ATCTGAGATTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTCTGCCTAAGCCAAC
1 ATCTGAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
22023016 CCATAAAACGAGCATACGGGCGCTCAACCGGTCGGAGAGGCAGAATGCGCAAG-CGAGGGATCGG
66 CCACAAAACGAGCATACAGGAGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCG-GGGATCAG
** * *
22023080 ACC-GATCCCCCCTGGGTGCTGTCGATCCTGCT
130 -CCTGATCCCCCCTACGTGCTGCCAATCCTGCT
22023112 ACCACAACCC
Statistics
Matches: 139, Mismatches: 20, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
195 2 0.01
196 135 0.97
197 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (196 bp):
ATCTGAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACAAAACGAGCATACAGGAGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGC
CTGATCCCCCCTACGTGCTGCCAATCCTGCTGCTGGTCCTACTATCGTAACCCTCGATCCAGTCA
G
Found at i:22023414 original size:158 final size:157
Alignment explanation
Indices: 22022978--22023797 Score: 620
Period size: 159 Copynumber: 5.2 Consensus size: 157
22022968 AACTCTGTAT
* * ** * * *
22022978 GCTTAGACATGGAATGAACTCCGTCTGCCTAAGCCAACCCATAAAACGAGCATACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
22023043 CCGGTCGGAGAGGCAGAATGCGCAAG-CGAGGGATCGGACCGATCCCCCCTGGGTGCTGTCGATC
66 CCAGTCGGAGAGGCAGAATGCGCAAGCCG-GGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
* * * *
22023107 CTGCTACCACAACCCTCGGTTCGGTCTGA
130 CCGCTGCCACAACCCTCGGTCCAG-CTGA
* * * * * * * *
22023136 TCTTAGAC-TGGGAATGAACT-CCTATGCATAAGCCAAACCGCGAAACTAGTGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
22023199 G-CAGGCCGAAGAGGCATAATGCGTAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTATC-A
65 GCCA-GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGA
* * * *
22023262 GTCCCGCTGCCACAACCCTTGGTTCGGCTGGG
128 -TCCCGCTGCCACAACCCTCGGTCCAGCT-GA
* * *
22023294 GCTTAGACATGGAATGAACTCCCTATGCCTCAGTCAACCCACGAAACG-GACGTGCGGGGGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCA
* * * *
22023358 GCCAGTCGGACAGGTAGAATACGCAAGCCGGAGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
65 GCCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
** * *
22023423 CTACTGCCGCAACCCTCGGTCCAGATTGA
130 CCGCTGCCACAACCCTCGGTCCAG-CTGA
* * * * * * *
22023452 TCTTAGAC-TGGGAATGAACTCCGTATGCCAAAGTCAACCCATGAAACGATCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * ** ** *
22023516 GTC-GATTGGAGAGGCATAATGCACAAGCCGGGGATCGACCCGGTCCCTTTCTGTATGCTG-CCA
65 GCCAG-TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCC-CCCTGCGTGCTGTCGA
22023579 TTCCCGCTGCCACAACCCTCGGTCCAGCTAGA
128 -TCCCGCTGCCACAACCCTCGGTCCAGCT-GA
* * * * * *
22023611 GATTAGACATGGAATAAACTCCCTATACCTAAGCCAAACCACGAAAC-AGGTGTGCGGGCGCTTA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCA
* * * * * ** * *
22023675 GCCGGCCGGAAAGGCAGAATGCACAAGCCGGGGATCAGTTCGGTCCCCCCCTGCGTGATGCCGA-
65 GCCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCCCTGCGTGCTGTCGAT
** * * *
22023739 CCCTGCTGCTGCAACCCTCGATCCGATCGGA
129 CCC-GCTGCCACAACCCTCGGTCC-AGCTGA
* *
22023770 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCCTATGC
22023798 TTAGATTAGG
Statistics
Matches: 513, Mismatches: 123, Indels: 51
0.75 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 72 0.14
158 198 0.39
159 231 0.45
160 11 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCGGTCCAGCTGA
Found at i:22023633 original size:317 final size:318
Alignment explanation
Indices: 22022980--22023797 Score: 898
Period size: 317 Copynumber: 2.6 Consensus size: 318
22022970 CTCTGTATGC
* * ** * * *
22022980 TTAGACATGGAATGAACTCCGTCTGCCTAAGCCAACCCATAAAAC-GAGCATACGGGCGCTCAAC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGA-CGTGCGGGCGCTCAGC
* * *
22023044 CGGTCGGAGAGGCAGAATGCGCAAG-CGAGGGATCGGACCGATCCCCCCTGGGTGCTGTCGATCC
65 CGGTCGGAAAGGCAGAATGCGCAAGCCG-GGGATCGGACCGGTCCCCCCTGCGTGCTGTCGATCC
* * * *
22023108 TGCTACCACAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCC-TATG-CATAAGCCA
129 TGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCATAAGCCA
* * * **
22023171 AACCGCGAAACTAGTGTGCGGGCACTGAGCAGGCCGAAGAGGCATAATGCGTAAGCCGGGGATCG
194 AACCACGAAACGAGTGTGCGGGCACTGAGCAGACCGAAGAGGCATAATGCACAAGCCGGGGATCG
* * * * * * * *
22023236 ACCCGATCCCCCTCTACGTGCTATCAGTCCCGCTGCCACAACCCTTGGTTCGGCTGGGGC
259 ACCCGATCCCCCTCTACATGCTACCAGTCCCGCTGCCACAACCCTCGGTCCAGCTAGAGA
* * *
22023296 TTAGACATGGAATGAACTCCCTATGCCTCAGTCAACCCACGAAACGGACGTGCGGGGGCTCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAGCC
* * * * * * *
22023361 AGTCGGACAGGTAGAATACGCAAGCCGGAGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTA
66 GGTCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGACCGGTCCCCCCTGCGTGCTGTCGATCCTG
*
22023426 CTGCCGCAACCCTCGGTCCAGAT-TGATCTTAGACTGGGAATGAACTCCGTATGCCA-AAGTCAA
131 CTGCCGCAACCCTCGGTCC-GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCATAAGCCAA
* * * ** *
22023489 CCCATGAAACGA-TCGTGCGGGCGCTGAGTC-GATTGGAGAGGCATAATGCACAAGCCGGGGATC
195 ACCACGAAACGAGT-GTGCGGGCACTGAG-CAGACCGAAGAGGCATAATGCACAAGCCGGGGATC
* ** ** * *
22023552 GACCCGGTCCCTTTCTGTATGCTGCCATTCCCGCTGCCACAACCCTCGGTCCAGCTAGAGA
258 GACCCGATCCCCCTCTACATGCTACCAGTCCCGCTGCCACAACCCTCGGTCCAGCTAGAGA
* * * * *
22023613 TTAGACATGGAATAAACTCCCTATACCTAAGCCAAACCACGAAACAGG-TGTGCGGGCGCTTAGC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-GGACGTGCGGGCGCTCAGC
* * * ** * * *
22023677 CGGCCGGAAAGGCAGAATGCACAAGCCGGGGATCAGTTCGGTCCCCCCCTGCGTGATGCCGACCC
65 CGGTCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGACCGGT-CCCCCCTGCGTGCTGTCGATCC
* * * *
22023742 TGCTGCTGCAACCCTCGATCCGATCGGATCTTAGACTAGGAATGAACTCCGTATGC
129 TGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
22023798 TTAGATTAGG
Statistics
Matches: 416, Mismatches: 76, Indels: 18
0.82 0.15 0.04
Matches are distributed among these distances:
316 147 0.35
317 198 0.48
318 71 0.17
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (318 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAGCC
GGTCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGACCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCATAAGCCAAA
CCACGAAACGAGTGTGCGGGCACTGAGCAGACCGAAGAGGCATAATGCACAAGCCGGGGATCGAC
CCGATCCCCCTCTACATGCTACCAGTCCCGCTGCCACAACCCTCGGTCCAGCTAGAGA
Found at i:22023719 original size:159 final size:156
Alignment explanation
Indices: 22022978--22023724 Score: 538
Period size: 158 Copynumber: 4.7 Consensus size: 156
22022968 AACTCTGTAT
* * * ** ** * *
22022978 GCTTAGACATGGAATGAACTCCGTCTGCCTAAGCCAACCCATAAAACGAGCATACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACG-GTGTGCGGGCGCTCAG
* * * * ** *
22023043 CCGGTCGGAGAGGCAGAATGCGCAAG-CGAGGGATCGGACCGATCCCCCCTGGGTGCTGTCGATC
65 CCGGTCGGAAAGGCAGAATGCACAAGCCG-GGGATC-GCCCGGTCCCCCCTGCATGCTGTCCATC
* * * *
22023107 CTGCTACCACAACCCTCGGTTCGGTCT-GA
128 CCGCTGCCACAACCCTCGGTCCAG-CTAGA
* * * * * * * *
22023136 TCTTAGAC-TGGGAATGAACT-CCTATGCATAAGCCAAACCGCGAAACTAGTGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGTCAACCCACGAAAC-GGTGTGCGGGCGCTCA
* * * ** * * * *
22023199 GCAGG-CCGAAGAGGCATAATGCGTAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTAT-CA
64 GCCGGTCGGAA-AGGCAGAATGCACAAGCCGGGGATCG-CCCGGTCCCCC-CTGCATGCTGTCCA
* * * * *
22023262 GTCCCGCTGCCACAACCCTTGGTTCGGCTGGG
126 -TCCCGCTGCCACAACCCTCGGTCCAGCTAGA
* * *
22023294 GCTTAGACATGGAATGAACTCCCTATGCCTCAGTCAACCCACGAAACGGACGTGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGG-TGTGCGGGCGCTCAG
* * * * * * * *
22023359 CCAGTCGGACAGGTAGAATACGCAAGCCGGAGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
65 CCGGTCGGAAAGGCAGAATGCACAAGCCGGGGATC-GCCCGGTCCCCCCTGCATGCTGTCCATCC
** * * *
22023424 TACTGCCGCAACCCTCGGTCCAGATTGA
129 CGCTGCCACAACCCTCGGTCCAGCTAGA
* * * * * *
22023452 TCTTAGAC-TGGGAATGAACTCCGTATGCCAAAGTCAACCCATGAAACGATCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGT-GTGCGGGCGCTCA
* * * * * ** *
22023516 GTCGATTGGAGAGGCATAATGCACAAGCCGGGGATCGACCCGGTCCCTTTCTGTATGCTG-CCAT
64 GCCGGTCGGAAAGGCAGAATGCACAAGCCGGGGATCG-CCCGGTCCC-CCCTGCATGCTGTCCA-
22023580 TCCCGCTGCCACAACCCTCGGTCCAGCTAGA
126 TCCCGCTGCCACAACCCTCGGTCCAGCTAGA
* * * * * *
22023611 GATTAGACATGGAATAAACTCCCTATACCTAAGCCAAACCACGAAACAGGTGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAAC-GGTGTGCGGGCGCTCAG
* **
22023676 CCGGCCGGAAAGGCAGAATGCACAAGCCGGGGATCAGTTCGGTCCCCCC
65 CCGGTCGGAAAGGCAGAATGCACAAGCCGGGGATC-GCCCGGTCCCCCC
22023725 CTGCGTGATG
Statistics
Matches: 455, Mismatches: 112, Indels: 44
0.74 0.18 0.07
Matches are distributed among these distances:
156 4 0.01
157 68 0.15
158 190 0.42
159 185 0.41
160 8 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGTGTGCGGGCGCTCAGC
CGGTCGGAAAGGCAGAATGCACAAGCCGGGGATCGCCCGGTCCCCCCTGCATGCTGTCCATCCCG
CTGCCACAACCCTCGGTCCAGCTAGA
Found at i:22023800 original size:26 final size:26
Alignment explanation
Indices: 22023771--22023823 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22023761 CCGATCGGAT
22023771 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
22023797 CTTAGATTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22023823 C
1 C
22023824 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22024542 original size:26 final size:26
Alignment explanation
Indices: 22024504--22024556 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22024494 GGCTCAAAAT
22024504 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22024530 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22024556 C
1 C
22024557 CTAGGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22025054 original size:26 final size:25
Alignment explanation
Indices: 22025005--22025054 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
22024995 CGGTCCGATC
*
22025005 TTAGACTGGGAATGAACTCGTATGT
1 TTAGACTGGGAATGAACTCATATGT
*
22025030 TTAGACTGGGGATGAACTCCATATG
1 TTAGACTGGGAATGAACT-CATATG
22025055 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (25 bp):
TTAGACTGGGAATGAACTCATATGT
Found at i:22026631 original size:26 final size:26
Alignment explanation
Indices: 22026593--22026645 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22026583 TGCTCAAAAT
22026593 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22026619 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
22026645 C
1 C
22026646 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22027984 original size:26 final size:26
Alignment explanation
Indices: 22027933--22027985 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22027923 CTGGTCTGAT
*
22027933 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
22027959 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
22027985 C
1 C
22027986 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22033747 original size:26 final size:26
Alignment explanation
Indices: 22033708--22033761 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
22033698 CGTCCGATCA
*
22033708 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
22033734 TAGACTGGGGATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
22033760 TA
1 TA
22033762 AGTCAACCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:22034455 original size:159 final size:157
Alignment explanation
Indices: 22034101--22034600 Score: 378
Period size: 159 Copynumber: 3.2 Consensus size: 157
22034091 CTCTATATGC
* * * * *
22034101 TTAGACATG-GAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GACGCTCAG
1 TTAGAC-TGAGAATGAACTCCATATGCCCAAGCCAACCCATGAAACGAGCGTACGAG-CGCTCAG
* * * * * * *
22034164 CCGATCGAAAAGGCAGAATG-TGCAAGCC-AGGGATCG-GCCTGATCCCCCCTGCGTGCTGTCGA
64 CCGACCGGAGAGGCAGAATGCT-CAAGCCGA-GGATCGACCCCG-T-CCCCCTGTGTACTGTCGA
** * * * *
22034226 TCCTGCTAG-CGTAA-CCTTTGGT-G-CTATCCGATC
125 TCCTGCT-GCCACAACCCTCTGTTCGACTA--GGA-A
* * * * * *
22034259 TTAGACTGAGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGATCGTACGGGCGCTGAGCC
1 TTAGACTGAGAATGAACTCCATATGCCCAAGCCAACCCATGAAACGAGCGTACGAGCGCTCAGCC
* * *
22034324 GGCCGGAGAGGCATAATG-TGCAAGCCGAGGATCGGCCCCGTCCCCCTCTGTGTACTGTCGATCC
66 GACCGGAGAGGCAGAATGCT-CAAGCCGAGGATCGACCCCGT-CCCC-CTGTGTACTGTCGATCC
* *
22034388 TGTTGCCACAATCCTCTGTTCGACTAGGAA
128 TGCTGCCACAACCCTCTGTTCGACTAGGAA
* * * *
22034418 TTAGACGTG-GAATGAACTCCCTATGCCCAAGCCAACCCATGAAACGCGCGTGCGAGCGCTCAGT
1 TTAGAC-TGAGAATGAACTCCATATGCCCAAGCCAACCCATGAAACGAGCGTACGAGCGCTCAGC
* * * *
22034482 CGATCGGAGAGGCAGAATGCTCAAGCCGGGGATCGACCCGGTCCCCCTGTGTGCTGTCGATCCTG
65 CGACCGGAGAGGCAGAATGCTCAAGCCGAGGATCGACCCCGTCCCCCTGTGTACTGTCGATCCTG
* * * * *
22034547 CTGCCCCAACCCTCGGTCCGGTCT--GATC
130 CTGCCACAACCCTCTGTTC-GACTAGGA-A
*
22034575 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGAGAATGAACTCCATATGC
22034601 GTAGACTAGG
Statistics
Matches: 279, Mismatches: 49, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
156 4 0.01
157 56 0.20
158 93 0.33
159 111 0.40
160 11 0.04
161 1 0.00
162 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
TTAGACTGAGAATGAACTCCATATGCCCAAGCCAACCCATGAAACGAGCGTACGAGCGCTCAGCC
GACCGGAGAGGCAGAATGCTCAAGCCGAGGATCGACCCCGTCCCCCTGTGTACTGTCGATCCTGC
TGCCACAACCCTCTGTTCGACTAGGAA
Found at i:22035226 original size:11 final size:11
Alignment explanation
Indices: 22035212--22035248 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
22035202 GCTCTCCGGT
22035212 GATGCTCCGAC
1 GATGCTCCGAC
*
22035223 GATGCTCTGAC
1 GATGCTCCGAC
22035234 GATGCTCCGAC
1 GATGCTCCGAC
22035245 GATG
1 GATG
22035249 GTGCCCTGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.22
Consensus pattern (11 bp):
GATGCTCCGAC
Found at i:22035356 original size:26 final size:26
Alignment explanation
Indices: 22035318--22035370 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22035308 GGCTCAAAAT
22035318 CTTAGACTAGGAATGAACTCCGAATG
1 CTTAGACTAGGAATGAACTCCGAATG
*
22035344 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGAATG
22035370 C
1 C
22035371 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGAATG
Found at i:22035701 original size:159 final size:156
Alignment explanation
Indices: 22035343--22035774 Score: 395
Period size: 159 Copynumber: 2.7 Consensus size: 156
22035333 AACTCCGAAT
* *
22035343 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTGCGGCCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
22035408 TCGGTCGGAGAGGCAGAATGTGCAAGTCGAGGATCGGCCCGTTCCCCCCTACATGCTGTCGATCC
66 -C-CTCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTACATGCTGTCGATCC
* * * *
22035473 TACTACCGCAACCCTCGATCTGATCTGA
129 CACTACCACAACCCTCGATCCGAGCTGA
* * * * *
22035501 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCGACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** ** *
22035565 GCCTACTGAAGAGGCATAATGCGCAAGCCGGGGATCAGTTCGATCCCCCTCTATGTGCTGTCGGT
65 GCCT-C-GAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCC-CTACATGCTGTCGAT
* * * *
22035630 CCCGCTGCCACAACCCTCGGTCCG-GCTGGG
127 CCCACTACCACAACCCTCGATCCGAGCT-GA
* ** * * *
22035660 GCTTAGACATGGAATGAACTCCCTACACCTAAGCCAACCCACGAAATGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * **
22035725 CCGGTC-AGAGAGCCAGAATGCACAAGCC-AGGGATTGGCCCGATCCCCCCT
66 CC--TCGA-AGAGGCAGAATGCGCAAGCCGA-GGATCAGCCCGATCCCCCCT
22035775 GCGTCTACCT
Statistics
Matches: 217, Mismatches: 47, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 3 0.01
158 94 0.43
159 116 0.53
160 2 0.01
161 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCTCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTACATGCTGTCGATCCCA
CTACCACAACCCTCGATCCGAGCTGA
Found at i:22035859 original size:26 final size:26
Alignment explanation
Indices: 22035818--22035896 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
22035808 CCGATTCGAT
* *
22035818 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
*
22035844 CTTAGACCAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
22035870 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
22035896 C
1 C
22035897 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:22037340 original size:26 final size:26
Alignment explanation
Indices: 22037303--22037354 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22037293 GCTCAAAATA
*
22037303 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
22037329 TTAGACAT-GGAATGAACTCCATATGC
1 TTAGAC-TGGGAATGAACTCCATATGC
22037355 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:22037675 original size:159 final size:158
Alignment explanation
Indices: 22037327--22037707 Score: 415
Period size: 158 Copynumber: 2.4 Consensus size: 158
22037317 AACTCCGTAT
* * ****
22037327 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCAACGAAACGAGCACATGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* *
22037392 CCGGCCGGAGAGGCAGAATGCGCAAACCAGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCT
66 CCGGCCGGAGAGGCAGAATGCGCAAACCAGGGATCAACCCGATCCCCCCTGCGTGCTATCGATCC
** * *
22037457 TGCTGCCACAACCCTCGGTCTGGTCCAA
131 CACTGCCACAACCCTCGGTCAGCTCCAA
* * ** ** *
22037485 TCTTAGACAGGGAATGAACTCTGTATGCCTAAGTTAACCCATGAAATGAGCGTGCGGGCGCT-AA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * ** * * * * * *
22037549 GCCGGCCGGAGAGGCATAATGCGTAAGTCGGGGATCAATCCGGTCCCCCTCTTCGTGCTGTCGGT
66 -CCGGCCGGAGAGGCAGAATGCGCAAACCAGGGATCAACCCGATCCCCC-CTGCGTGCTATCGAT
* ***
22037614 CCCATTGCCACAACCCTCGGTTCAGCT-GGG
129 CCCACTGCCACAACCCTCGG-TCAGCTCCAA
*
22037644 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
22037708 GCTGATCGAA
Statistics
Matches: 179, Mismatches: 40, Indels: 6
0.80 0.18 0.03
Matches are distributed among these distances:
157 2 0.01
158 89 0.50
159 83 0.46
160 5 0.03
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
CCGGCCGGAGAGGCAGAATGCGCAAACCAGGGATCAACCCGATCCCCCCTGCGTGCTATCGATCC
CACTGCCACAACCCTCGGTCAGCTCCAA
Found at i:22037844 original size:25 final size:25
Alignment explanation
Indices: 22037815--22037879 Score: 121
Period size: 25 Copynumber: 2.6 Consensus size: 25
22037805 TAGGCAGGTA
*
22037815 ATGAACTCCGTATGCTTAGACTGGG
1 ATGAACTCCATATGCTTAGACTGGG
22037840 ATGAACTCCATATGCTTAGACTGGG
1 ATGAACTCCATATGCTTAGACTGGG
22037865 ATGAACTCCATATGC
1 ATGAACTCCATATGC
22037880 CTAAGTCAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (25 bp):
ATGAACTCCATATGCTTAGACTGGG
Found at i:22039046 original size:26 final size:26
Alignment explanation
Indices: 22039017--22039069 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22039007 CCGATCCTAT
22039017 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22039043 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22039069 C
1 C
22039070 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22039267 original size:26 final size:26
Alignment explanation
Indices: 22039228--22039278 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
22039218 CAAGCCAATC
*
22039228 TTAGACTGGTAATGAACTTCGTATGT
1 TTAGACTGGTAATGAACTCCGTATGT
22039254 TTAGACATGG-AATGAACTCCGTATG
1 TTAGAC-TGGTAATGAACTCCGTATG
22039279 CCTAAGCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (26 bp):
TTAGACTGGTAATGAACTCCGTATGT
Found at i:22039439 original size:26 final size:26
Alignment explanation
Indices: 22039410--22039462 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22039400 CCGATCTGAT
22039410 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGA-TGGGGAATGAACTCCGTATG
*
22039436 CTTAGATGGGGTATGAACTCCGTATG
1 CTTAGATGGGGAATGAACTCCGTATG
22039462 C
1 C
22039463 GTAAGTCATC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGATGGGGAATGAACTCCGTATG
Found at i:22040666 original size:26 final size:26
Alignment explanation
Indices: 22040622--22040674 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22040612 CTGGTTCGAT
22040622 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* * * *
22040648 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
22040674 C
1 C
22040675 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:22040808 original size:21 final size:21
Alignment explanation
Indices: 22040784--22040830 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
22040774 TCCTACTGTT
22040784 GGTCTTGCTACTGCAACCATC
1 GGTCTTGCTACTGCAACCATC
* * *
22040805 GGTCCTGCTGCTGCAACCCTC
1 GGTCTTGCTACTGCAACCATC
22040826 GGTCT
1 GGTCT
22040831 GGTCTAATCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.13, C:0.36, G:0.23, T:0.28
Consensus pattern (21 bp):
GGTCTTGCTACTGCAACCATC
Found at i:22040965 original size:217 final size:217
Alignment explanation
Indices: 22040600--22040997 Score: 483
Period size: 217 Copynumber: 1.8 Consensus size: 217
22040590 TCCTGCTAAC
* * * ** **
22040600 GCAACCCTCGATCTGGTTCGATCTTAGACTAGGAATAAACTCCGTATGCTTAGACTGGGGATGAA
1 GCAACCCTCGATCTGGTTCAATCTTAGACTAGGAATAAACTCCATACGCTTAGACACGAAATGAA
* * *
22040665 CTCTGTATGCCTAAGTCAACCCACGAAAGGAGCATACAGGTGCTAAGCCGATCGGAGAGGTAGAA
66 CTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACAGGTGCTAAGCCGATCGGAGAGGTAGAA
* **
22040730 TACGTAAGCCGAGGATCGGTTTGGTCCCCCCTACATGCTGTCGATCCTACTGTTGGTCTTGCTAC
131 TACGCAAGCCGAGGATCGGCCTGGTCCCCCCTACATGCTGTCGATCCTACTGTTGGTCTTGCTAC
22040795 TGCAACCATCGGTCCTGCTGCT
196 TGCAACCATCGGTCCTGCTGCT
* * * *
22040817 GCAACCCTCGGTCTGG-TCTAATCTTAGACTGGGAATGAACTCTATACGCTTAGACACGAAATGA
1 GCAACCCTCGATCTGGTTC-AATCTTAGACTAGGAATAAACTCCATACGCTTAGACACGAAATGA
* * *** ** * * *
22040881 ACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCTGTCGGTCGGAGAGGTGGA
65 ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACAGGTGCTAAGCCGATCGGAGAGGTAGA
** * ***
22040946 ATGTGCAAGCCGGGGATCGGCCTGGTCCCCCCTGTGTGCTGTCGATCCTACT
130 ATACGCAAGCCGAGGATCGGCCTGGTCCCCCCTACATGCTGTCGATCCTACT
22040998 ATCGCAACCC
Statistics
Matches: 147, Mismatches: 33, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
216 2 0.01
217 145 0.99
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (217 bp):
GCAACCCTCGATCTGGTTCAATCTTAGACTAGGAATAAACTCCATACGCTTAGACACGAAATGAA
CTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACAGGTGCTAAGCCGATCGGAGAGGTAGAA
TACGCAAGCCGAGGATCGGCCTGGTCCCCCCTACATGCTGTCGATCCTACTGTTGGTCTTGCTAC
TGCAACCATCGGTCCTGCTGCT
Found at i:22041501 original size:355 final size:355
Alignment explanation
Indices: 22040805--22041505 Score: 948
Period size: 355 Copynumber: 2.0 Consensus size: 355
22040795 TGCAACCATC
* * * * * *
22040805 GGTCCTGCTGCTGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCTATACGCTTAG
1 GGTCCTGCTACTGCAACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACTCCATACGCTTAG
* * *
22040870 ACACGAAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCTGTCGGTC
66 ACACGAAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAGTCGGTC
* * ** *
22040935 GGAGAGGTGGAATGTGCAAGCCGGGGATCGGCCTGGTCCCCCCTGTGTGCTGTCGATCCTACTAT
131 GGAGAGGTAGAATATGCAAGCCGGGGATCGGCCTGGTCCCCCCTACGTGCTGTCGATCCTACTAC
* * *
22041000 CGCAACCCTCATTCCGGTTCTATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
196 CGCAACCCTCAGTCCGGATCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* ** * * *
22041065 AAACAAGCGTGCAGGGGCTCAGCCGGTCGGAGAGGCAAAATGCACAATCTGGGGATAGACCTGGT
261 AAACAAGCGTACAGGGGCTCAGCCACTCGGAGAGGCAAAATGCACAAGCCGGGGATAGACCTGAT
*
22041130 CCCCTCTTGTATGCTGTCGATTCTGCTACG
326 CCCCTCTTGCATGCTGTCGATTCTGCTACG
* *
22041160 GGTCCTGCTACTGCAACCCTCGATCCGGTCCAATCTTAGATTAGGAATGAACTCCGTACGCTTAG
1 GGTCCTGCTACTGCAACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACTCCATACGCTTAG
*
22041225 ACACGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAGTCGGTC
66 ACACGAAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAGTCGGTC
* * *
22041290 GGAGAGGTAGAATATGCAAGCCGGGGATCGGCCTGGTCCCTCCTACGTGCTGTTGATCCTACTGC
131 GGAGAGGTAGAATATGCAAGCCGGGGATCGGCCTGGTCCCCCCTACGTGCTGTCGATCCTACTAC
* * *
22041355 CGTAACCCTCAGTCC-GATCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAAGTTAACCCAT
196 CGCAACCCTCAGTCCGGATCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-
* * * * *
22041419 C-AAACGAGCGTAC-GGGCGTTCAGCCAACT-GGAGGGGCATAATGCGCAAGCCGGGGATCAG--
259 CGAAACAAGCGTACAGGG-GCTCAGCC-ACTCGGAGAGGCAAAATGCACAAGCCGGGGAT-AGAC
22041479 CTCGATCCCC-CTCTGCATGCTGTCGAT
321 CT-GATCCCCTCT-TGCATGCTGTCGAT
22041506 CCCGCTGCCA
Statistics
Matches: 301, Mismatches: 38, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
354 11 0.04
355 286 0.95
356 4 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.23
Consensus pattern (355 bp):
GGTCCTGCTACTGCAACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACTCCATACGCTTAG
ACACGAAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAGTCGGTC
GGAGAGGTAGAATATGCAAGCCGGGGATCGGCCTGGTCCCCCCTACGTGCTGTCGATCCTACTAC
CGCAACCCTCAGTCCGGATCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAACAAGCGTACAGGGGCTCAGCCACTCGGAGAGGCAAAATGCACAAGCCGGGGATAGACCTGAT
CCCCTCTTGCATGCTGTCGATTCTGCTACG
Found at i:22041721 original size:158 final size:157
Alignment explanation
Indices: 22041220--22041721 Score: 513
Period size: 158 Copynumber: 3.2 Consensus size: 157
22041210 ACTCCGTACG
** * * * * *
22041220 CTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
* * ** * * * * *
22041285 CGGTCGGAGAGGTAGAATATGCAAGCCGGGGATCGGCCTGGT-CCCTCCTACGTGCTGTTGATCC
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCT-CTGCGTGCTGTCGATCC
* * * *
22041349 TACTGCCGTAACCCTCAGTCCGATCTAAT
130 TGCTGCCGCAACCCTCGGTCCG-TCTGAT
* ** *
22041378 CTTAGACTGGGAATGAACTCCGTATGCTTAAGTTAACCCATC-AAACGAGCGTACGGGCGTTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCA-CGAAACGAGCGTGCGGGCGTTCAG
** * * * * *
22041442 CCAACTGGAGGGGCATAATGCGCAAGCCGGGGATCAGCTCGATCCCCCTCTGCATGCTGTCGATC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGAT-CCCCTCTGCGTGCTGTCGATC
* * * **
22041507 CCGCTGCCACAACCCTCGGTCCGACTGGGG
129 CTGCTGCCGCAACCCTCGGTCCGTCT-GAT
* * * * *
22041537 CTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
* * * *
22041602 CGGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCTTTGGGTGCTGTCGATCCT
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCTCTGCGTGCTGTCGATCCT
*
22041667 GCTACCGCAACCCTCGGTCCAGTCTGAT
131 GCTGCCGCAACCCTCGGTCC-GTCTGAT
*
22041695 ATTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
22041722 TTAGACTAGG
Statistics
Matches: 273, Mismatches: 65, Indels: 12
0.78 0.19 0.03
Matches are distributed among these distances:
158 147 0.54
159 122 0.45
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCTCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTCCGTCTGAT
Found at i:22041736 original size:26 final size:26
Alignment explanation
Indices: 22041696--22041747 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22041686 CAGTCTGATA
*
22041696 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
22041722 TTAGACTAGGG-ATGAACTCCATATGC
1 TTAGACT-GGGAATGAACTCCATATGC
22041748 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:22042335 original size:26 final size:26
Alignment explanation
Indices: 22042285--22042337 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22042275 CCAGTTCGAT
**
22042285 CTTAAACTGGGAATGAACTTTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
22042311 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
22042337 C
1 C
22042338 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:22043271 original size:159 final size:158
Alignment explanation
Indices: 22043042--22043330 Score: 370
Period size: 159 Copynumber: 1.8 Consensus size: 158
22043032 AACTTTGTAT
**
22043042 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGAGCGCTCAA
1 GCTTAGACATGGAATAAACTCCCCATGCCTAAGCCAACCCACAAAATGAGCGTGCGAGCGCTCAA
* * *
22043107 CCGGTCGGAGAGGAAAAATGTGCAAGCCGGGGATCATGCTAG-TCCCCCTCTACGTGCTGCCGGT
66 CCGGTCAGAGAGGAAAAATGTGCAAGCCGGGGATC-GGCCAGATCCCCC-CTACGTGCTGCCGGT
22043171 CCCGCTACCACAACCCTCGATCTGACTGGG
129 CCCGCTACCACAACCCTCGATCTGACTGGG
* *
22043201 GCTTAGACATGGAATGAACTCCCCATGCCTAAGCCAACCCACGAAACA-G-GTGTGC-AGGCGCT
1 GCTTAGACATGGAATAAACTCCCCATGCCTAAGCCAACCCAC-AAA-ATGAGCGTGCGA-GCGCT
* ** * * * * *
22043263 TAGTCGGTCAGAGAGGTAGAATGTGCAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGG
63 CAACCGGTCAGAGAGGAAAAATGTGCAAGCCGGGGATCGGCCAGATCCCCCCTACGTGCTGCCGG
22043328 TCC
128 TCC
22043331 TGCTGCTGTA
Statistics
Matches: 111, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
158 20 0.18
159 86 0.77
160 4 0.04
161 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATAAACTCCCCATGCCTAAGCCAACCCACAAAATGAGCGTGCGAGCGCTCAA
CCGGTCAGAGAGGAAAAATGTGCAAGCCGGGGATCGGCCAGATCCCCCCTACGTGCTGCCGGTCC
CGCTACCACAACCCTCGATCTGACTGGG
Found at i:22043402 original size:26 final size:26
Alignment explanation
Indices: 22043360--22043412 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22043350 TCTGTTTGAT
*
22043360 CTTAGACTGGGACTGAACTCCGTATG
1 CTTAGACTGGGACTGAACACCGTATG
*
22043386 CTTAGACTGGGGA-TGAACACTGTATG
1 CTTAGACT-GGGACTGAACACCGTATG
22043412 C
1 C
22043413 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGACTGAACACCGTATG
Found at i:22043607 original size:26 final size:26
Alignment explanation
Indices: 22043569--22043621 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22043559 CCAGTCTGAT
22043569 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22043595 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22043621 C
1 C
22043622 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22044109 original size:26 final size:26
Alignment explanation
Indices: 22044073--22044125 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22044063 CTGGTTCGAT
*
22044073 CTTAGATTGGGAATTAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
* *
22044099 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
22044125 C
1 C
22044126 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:22044619 original size:158 final size:158
Alignment explanation
Indices: 22044403--22044934 Score: 520
Period size: 158 Copynumber: 3.4 Consensus size: 158
22044393 CTATTGCTGG
* * * *
22044403 TCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
1 TCCTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
* * * * *
22044468 CAACCCATGAAACGAGCGTGCGGGCACTCAATCAGTCGGAAAGGTAAAATGCGTAAACCGGGGA-
66 CAACCCACGAAACGAGCGTGCGGGCACTCAATCAGTCGGAGAGGTAAAATGCGCAAGCCAGGGAT
*
22044532 CTGACCCGATCCCCCCTGCGTGCTGTCAA
131 C-GACCCGATCCCCCCTGCGTGCTGTCGA
* * * *
22044561 TCCTGCTGCCGCAACCCTTGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGT
1 TCCTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
* * * * * * *
22044626 CAACCCACGAAACGAGCGTGCGGGCACTGAGTCGGCCGGAGAGGCATAATGCGCAAGTCAGGGAT
66 CAACCCACGAAACGAGCGTGCGGGCACTCAATCAGTCGGAGAGGTAAAATGCGCAAGCCAGGGAT
* * *
22044691 CGACCCCATCCCTCTCTGCGTGCTGTCGG
131 CGACCCGATCCC-CCCTGCGTGCTGTCGA
* * * * * * * * * *
22044720 TCCCGCTACCACAACCCTCGGTC-CGACTGCAGCTTACAC-ATGGAATGAACTCCCTATGCCTAA
1 TCCTGCTGCCGCAACCCTCGATCTGGTCCG-ATCTTAGACTA-GGAATGAACTCCGTATGCCTAA
* * ** * * * *
22044783 GCCAACCCACGAAACGGGCATGCGGGCGTTC-AGCCGATCGGAGAGGTAGAATGCGCAAGCCAAG
64 GCCAACCCACGAAACGAGCGTGCGGGCACTCAATCAG-TCGGAGAGGTAAAATGCGCAAGCCAGG
* * *
22044847 GATCGGCCCGAT-CCCCCTGCGTGTTATCGA
128 GATCGACCCGATCCCCCCTGCGTGCTGTCGA
* * * *
22044877 TCCTACTGCTGCAACCCTTGAT-TCGGTTCGATCTTAGACT-GGAATGAACTCCGTATGC
1 TCCTGCTGCCGCAACCCTCGATCT-GGTCCGATCTTAGACTAGGAATGAACTCCGTATGC
22044935 TTAGACTGGG
Statistics
Matches: 298, Mismatches: 68, Indels: 18
0.78 0.18 0.05
Matches are distributed among these distances:
156 17 0.06
157 34 0.11
158 129 0.43
159 118 0.40
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.20
Consensus pattern (158 bp):
TCCTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
CAACCCACGAAACGAGCGTGCGGGCACTCAATCAGTCGGAGAGGTAAAATGCGCAAGCCAGGGAT
CGACCCGATCCCCCCTGCGTGCTGTCGA
Found at i:22044836 original size:159 final size:157
Alignment explanation
Indices: 22044414--22044869 Score: 461
Period size: 159 Copynumber: 2.9 Consensus size: 157
22044404 CCTGCTGTCG
* * * * * * *
22044414 CAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
1 CAACCCTCGGTCCGCTCCGAGCTTACACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAA
* * * * *
22044479 ACGAGCGTGCGGGCACTCAATC-AGTCGGAAAGGTAAAATGCGTAAACCGGGGA-CTGACCCGAT
66 ACGAGCGTGCGGGCACTCAGTCGA-TCGGAGAGGTAAAATGCGCAAGCCAGGGATC-GACCCGAT
* * *
22044542 CCCCCCTGCGTGCTGTCAATCCTGCTGCCG
129 -CCCCCTGCGTGCTGTCAATCCCGCTACCA
* * * * * *
22044572 CAACCCTTGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAA
1 CAACCCTCGGTCCGCTCCGAGCTTACACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAA
* ** * * * *
22044637 ACGAGCGTGCGGGCACTGAGTCGGCCGGAGAGGCATAATGCGCAAGTCAGGGATCGACCCCATCC
66 ACGAGCGTGCGGGCACTCAGTCGATCGGAGAGGTAAAATGCGCAAGCCAGGGATCGACCCGATCC
**
22044702 CTCTCTGCGTGCTGTCGGTCCCGCTACCA
131 C-C-CTGCGTGCTGTCAATCCCGCTACCA
* *
22044731 CAACCCTCGGTCCGACTGC-AGCTTACAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
1 CAACCCTCGGTCCG-CTCCGAGCTTACACTA-GGAATGAACTCCATATGCCTAAGCCAACCCACG
* * ** * * * *
22044794 AAACGGGCATGCGGGCGTTCAGCCGATCGGAGAGGTAGAATGCGCAAGCCAAGGATCGGCCCGAT
64 AAACGAGCGTGCGGGCACTCAGTCGATCGGAGAGGTAAAATGCGCAAGCCAGGGATCGACCCGAT
22044859 CCCCCTGCGTG
129 CCCCCTGCGTG
22044870 TTATCGATCC
Statistics
Matches: 245, Mismatches: 47, Indels: 13
0.80 0.15 0.04
Matches are distributed among these distances:
157 10 0.04
158 108 0.44
159 125 0.51
160 2 0.01
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (157 bp):
CAACCCTCGGTCCGCTCCGAGCTTACACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAA
ACGAGCGTGCGGGCACTCAGTCGATCGGAGAGGTAAAATGCGCAAGCCAGGGATCGACCCGATCC
CCCTGCGTGCTGTCAATCCCGCTACCA
Found at i:22044943 original size:25 final size:26
Alignment explanation
Indices: 22044909--22044958 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
22044899 TCGGTTCGAT
22044909 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22044934 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
22044959 TCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22046087 original size:26 final size:26
Alignment explanation
Indices: 22046035--22046087 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
22046025 GGCTCAAAAT
**
22046035 CTTAGATTGGGAATGAACTCTGCATG
1 CTTAGATTGGGAATGAACTCCACATG
*
22046061 CTTAGA-TGTGGAATGAACTCCATATG
1 CTTAGATTG-GGAATGAACTCCACATG
22046087 C
1 C
22046088 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCACATG
Found at i:22046540 original size:158 final size:157
Alignment explanation
Indices: 22046070--22046556 Score: 452
Period size: 158 Copynumber: 3.1 Consensus size: 157
22046060 GCTTAGATGT
* * * *
22046070 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAGCAGGCTAGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGCCGGCCAGAG
* * **
22046135 AGGCAGAATGCGCAAGCCGGGGAT-TGACCTGGTCCGCCCCTGTGTGCTGTCGATCTTG-TGGTA
66 AGGCAGAATGCGCAAGCCGGGGATCGGACC-GGTCC-CCCCTGTGTGCTGTCGATCCTGCTGCCA
* * *
22046198 GTAACCCTTAGTCTGGTCAGATCTTAGACTA
129 -CAACCCTTAGTC-CGACAGATCTTAGACTA
* * * ** ** **
22046229 GGAATGAACTCCGTATGCAT-AGTCAACCCATGAAACGAGCGTGCGTCCGCTGTGCCGATC-GAA
1 GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGCCGGCCAG-A
* ** * *
22046292 GAGGCATAATGCGCAAGCCGGGGATC-GACCCGGT-TGCCCTTTGCATGCTGCCTG-TCCTGCTG
65 GAGGCAGAATGCGCAAGCCGGGGATCGGA-CCGGTCCCCCCTGTG--TGCTGTC-GATCCTGCTG
* * * **
22046354 CCACAACCCTCAATCCGACTGGGGCTTAGAC-A
126 CCACAACCCTTAGTCCGAC-AGATCTTAGACTA
* *
22046386 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGCGCTCAGCCGGCCAG
1 -GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGA-GCGTGCGAGCGCTCAGCCGGCCAG
* * *
22046450 AGAGGCAGAATGCGTAAGCCTGGGATCGGTCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGCCA
64 AGAGGCAGAATGCGCAAGCCGGGGATCGGACCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGCCA
* * *
22046515 CAACCCTTGGTCCAGACCGATCTTAGACTG
129 CAACCCTTAGTCC-GACAGATCTTAGACTA
22046545 GGAATGAACTCC
1 GGAATGAACTCC
22046557 GGACCGATCT
Statistics
Matches: 258, Mismatches: 53, Indels: 35
0.75 0.15 0.10
Matches are distributed among these distances:
156 6 0.02
157 5 0.02
158 152 0.59
159 87 0.34
160 8 0.03
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGCCGGCCAGAG
AGGCAGAATGCGCAAGCCGGGGATCGGACCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGCCACA
ACCCTTAGTCCGACAGATCTTAGACTA
Found at i:22046562 original size:29 final size:29
Alignment explanation
Indices: 22046529--22046586 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
22046519 CCTTGGTCCA
22046529 GACCGATCTTAGACTGGGAATGAACTCCG
1 GACCGATCTTAGACTGGGAATGAACTCCG
22046558 GACCGATCTTAGACTGGGAATGAACTCCG
1 GACCGATCTTAGACTGGGAATGAACTCCG
22046587 TATGCTTAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.24, G:0.28, T:0.21
Consensus pattern (29 bp):
GACCGATCTTAGACTGGGAATGAACTCCG
Found at i:22046606 original size:26 final size:26
Alignment explanation
Indices: 22046536--22046617 Score: 103
Period size: 26 Copynumber: 3.0 Consensus size: 26
22046526 CCAGACCGAT
* *
22046536 CTTAGACTGGGAATGAACTCCGGACCG
1 CTTAGACTGGGAATGAACTCCGTA-TG
22046563 ATCTTAGACTGGGAATGAACTCCGTATG
1 --CTTAGACTGGGAATGAACTCCGTATG
22046591 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
22046617 C
1 C
22046618 CTAAGTCTAC
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
26 23 0.46
27 3 0.06
28 1 0.02
29 23 0.46
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22047858 original size:185 final size:185
Alignment explanation
Indices: 22047646--22048009 Score: 455
Period size: 185 Copynumber: 2.0 Consensus size: 185
22047636 GTTGGGGCTC
* **
22047646 AGACATGGAACGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGAGTGTGGGCACTCAG-CCG
1 AGACATGGAACGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGACTGCAGGCACTCAGTCCG
* * * * * *
22047710 GTCAGAGAGGTAGAATGTGCAAG-TCAAGGATCGGCCCGGTCCCCCCT-TACGTGCTGTCGATCC
66 ATCAGAGAGGCAGAATGCGCAAGCT-AAGGATCAGCCCGATCCCCCATGT--GTGCTGTCGATCC
* * *
22047773 TGCTGCCGCAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTTTGCTT
128 TACTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTTTGCTT
* * **
22047831 AGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCCTGCAGGCGTTCAGTCCG
1 AGACATGGAACGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGACTGCAGGCACTCAGTCCG
* ** * *
22047896 ATCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCTCGATCCCCCATGTGTGCTGTTGATCCTAC
66 ATCAGAGAGGCAGAATGCGCAAGCTAAGGATCAGCCCGATCCCCCATGTGTGCTGTCGATCCTAC
* * * *
22047961 TGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGT
131 TGCCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGT
22048010 ATGCCTAAGT
Statistics
Matches: 151, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
185 111 0.74
186 38 0.25
187 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (185 bp):
AGACATGGAACGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGACTGCAGGCACTCAGTCCG
ATCAGAGAGGCAGAATGCGCAAGCTAAGGATCAGCCCGATCCCCCATGTGTGCTGTCGATCCTAC
TGCCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTTTGCTT
Found at i:22048220 original size:159 final size:157
Alignment explanation
Indices: 22047827--22048245 Score: 400
Period size: 159 Copynumber: 2.6 Consensus size: 157
22047817 AACTCCGTTT
* * *
22047827 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCCTGCAGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCCTGCAGGCG-TCAG
* * ** **
22047892 TCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATC-AGCTCGATCCCCCATGTGTGCTGTTGAT
65 -CCGATCGGAGAGGCAAAATGCGCAAGC-GGGGATCGAGCCCGATCCCCCATGCATGCTGCCGAT
* * **
22047956 CCTACTGTCGTAACCCTCGGTCCGGTCTGA
128 CCCACTGCCACAACCCTCGGTCCGGTCTGA
* * * ** *
22047986 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAG-TCAACCCACGAAATGAGCATGTGGGCAGTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACGAGCCTGCAGGC-GTC
* * * * * *
22048049 AGCTGGTTGGAGAGGCATAATGGGCAAGTCGGGGATCGA-CCCGGTCCCCTTC-TGCATGCTGCC
63 AGCCGATCGGAGAGGCAAAATGCGCAAG-CGGGGATCGAGCCCGATCCCC--CATGCATGCTGCC
* * *
22048112 GATCCCGCTGCCACAACCCTCGGTCTGG-CTAGG
125 GATCCCACTGCCACAACCCTCGGTCCGGTCT-GA
* * *
22048145 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACAAAACGGGCCTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCCTGCAGGCG-TCAG
*
22048210 CCGATCGGAGAGGCAAAATGCGCAAGCCAGGGATCG
65 CCGATCGGAGAGGCAAAATGCGCAAG-CGGGGATCG
22048246 GCCTTTGAAG
Statistics
Matches: 206, Mismatches: 43, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
158 40 0.19
159 162 0.79
160 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCCTGCAGGCGTCAGC
CGATCGGAGAGGCAAAATGCGCAAGCGGGGATCGAGCCCGATCCCCCATGCATGCTGCCGATCCC
ACTGCCACAACCCTCGGTCCGGTCTGA
Found at i:22048611 original size:26 final size:26
Alignment explanation
Indices: 22048573--22048625 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22048563 GGCTCAAAAT
22048573 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
22048599 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
22048625 C
1 C
22048626 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:22049102 original size:26 final size:26
Alignment explanation
Indices: 22049073--22049125 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22049063 CCAGTTCGAT
* *
22049073 CTTAGACTGGGAATGCACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22049099 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22049125 C
1 C
22049126 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22049308 original size:26 final size:26
Alignment explanation
Indices: 22049270--22049322 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22049260 CCGGTTTGAT
22049270 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
* *
22049296 CTTAGACAT-GGAATGAACTTTGTATG
1 CTTAGAC-TGGGAATAAACTCTGTATG
22049322 C
1 C
22049323 CAAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:22049414 original size:197 final size:197
Alignment explanation
Indices: 22049043--22049417 Score: 497
Period size: 197 Copynumber: 1.9 Consensus size: 197
22049033 GCTACCGATT
* **
22049043 CTGCTGCAGTAACCCTCGATCCAGTTCGATCTTAGACTGGGAATGCACTTCGTATGCTTAGACTG
1 CTGCTGCAGCAACCCTCGATCCAGTTCGATCTTAGACTGGGAATAAACTTCGTATGCTTAGACTG
* * * * *
22049108 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGTGGGTGCTCAACCGATCGGAG
66 GGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAACGTGTGGGCGCTCAACCGATCGAAG
* * *
22049173 AGGCAGAATGCGTAAGCCGGGGATCGACCCAATTCCCTCCTGCGTGCTACCGATCCTACTGCTAG
131 AGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCCCTGCGTGCTACCGATCCTACTGCTAG
22049238 TC
196 TC
* * *
22049240 CTGCTGCTGCAACCCTC-AGTCCGGTTTGATCTTAGACTGGGAATAAAC-TCTGTATGCTTAGAC
1 CTGCTGCAGCAACCCTCGA-TCCAGTTCGATCTTAGACTGGGAATAAACTTC-GTATGCTTAGAC
** * *
22049303 AT-GGAATGAACTTTGTATGCCAAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGA-CT
64 -TGGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAACGTGTGGGCGCTCAACCGATC-
* **
22049366 GAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCCTGCGTGCT
127 GAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCCCTGCGTGCT
22049418 GTCAATCCTG
Statistics
Matches: 153, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
196 4 0.03
197 148 0.97
198 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (197 bp):
CTGCTGCAGCAACCCTCGATCCAGTTCGATCTTAGACTGGGAATAAACTTCGTATGCTTAGACTG
GGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAACGTGTGGGCGCTCAACCGATCGAAG
AGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCCCTGCGTGCTACCGATCCTACTGCTAG
TC
Found at i:22049597 original size:159 final size:159
Alignment explanation
Indices: 22049296--22049798 Score: 495
Period size: 159 Copynumber: 3.2 Consensus size: 159
22049286 ACTCTGTATG
* * * *
22049296 CTTAGACATGGAATGAACTTTGTATGCCAAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * * * * *
22049361 CGACTGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCCTGCGTGCTGTCAATC-
66 CGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATTGGCCTGGTCCCCCTCTGTGTGCTGTCGATCT
* * * * *
22049425 CTGCTGCTGCAACCTTTGGTTCGGTCCGAT
131 C-GTTGCCGCAACCCTCGGTTCGGTCAGAT
* * * ** *
22049455 CTTAGAC-TGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCATTGAG
1 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * *
22049519 CCGGCCGAAGAGGCATAATGTGCATGCCGAGGATTGGCCCGGTCCCCCTCTGTGTGTTATCGATC
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATTGGCCTGGTCCCCCTCTGTGTGCTGTCGATC
* **
22049584 TCGTTGCCACAACCCTCGG-TCAGG-CTAGGG
130 TCGTTGCCGCAACCCTCGGTTC-GGTC-AGAT
* * *
22049614 CTTAGACATGGAATGAACTTCCTATACCTAAGCCAACCCACGAAAC-AGGCATGCGGGTGCTCAG
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGA-GCATGCGGGCGCTCAG
* * *
22049678 CAGGCCGGAGAGGCAGAATGCACAAGCC-AGAGATTGGCCTGGTCCCCCT-TGTGTGCTGTCGA-
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCGAG-GATTGGCCTGGTCCCCCTCTGTGTGCTGTCGAT
* *
22049740 -TCGTACTGCCGCAACCCTCGGTCCGGTCTGAT
129 CTCGT--TGCCGCAACCCTCGGTTCGGTCAGAT
22049772 CTTAGAC-TGGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTTCGTATGC
22049799 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 55, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
156 4 0.01
157 1 0.00
158 58 0.21
159 212 0.77
160 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
CGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATTGGCCTGGTCCCCCTCTGTGTGCTGTCGATCT
CGTTGCCGCAACCCTCGGTTCGGTCAGAT
Found at i:22049808 original size:26 final size:26
Alignment explanation
Indices: 22049772--22049824 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22049762 CCGGTCTGAT
*
22049772 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
* *
22049798 CTTAGACTGGGGATAAACTTTGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
22049824 C
1 C
22049825 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:22052476 original size:177 final size:177
Alignment explanation
Indices: 22052180--22052525 Score: 665
Period size: 177 Copynumber: 2.0 Consensus size: 177
22052170 AAAGCTTGGG
22052180 TCGTTGGTGCTCAATGCTGTCCAAAGTAAGGGGAGCCACAAGCCAAAGGGCTTGATGTTTACGAA
1 TCGTTGGTGCTCAATGCTGTCCAAAGTAAGGGGAGCCACAAGCCAAAGGGCTTGATGTTTACGAA
22052245 TCTGATGGTTGCAGGTCAGAAGGTGAGCGCACTAGTGGACACAGGTGCCTCACATCTTTTTATTT
66 TCTGATGGTTGCAGGTCAGAAGGTGAGCGCACTAGTGGACACAGGTGCCTCACATCTTTTTATTT
*
22052310 CAGGTGATAGAGCCTAGAAGCTTGAACTAAAGGTGCAGAGCCTCACA
131 CAGGTGATAGAGCCTAGAAGCTCGAACTAAAGGTGCAGAGCCTCACA
*
22052357 TCGTTGGTGCTCAATGCTGTCCAAAGTAAGGGGAGCCACAAGCCAAAGGGCTTGATGTTTGCGAA
1 TCGTTGGTGCTCAATGCTGTCCAAAGTAAGGGGAGCCACAAGCCAAAGGGCTTGATGTTTACGAA
*
22052422 TCTGATGGTTGCAGGTCAGAAGGTGAGTGCACTAGTGGACACAGGTGCCTCACATCTTTTTATTT
66 TCTGATGGTTGCAGGTCAGAAGGTGAGCGCACTAGTGGACACAGGTGCCTCACATCTTTTTATTT
22052487 CAGGTGATAGAGCCTAGAAGCTCGAACTAAAGGTGCAGA
131 CAGGTGATAGAGCCTAGAAGCTCGAACTAAAGGTGCAGA
22052526 AAGGGGCTGG
Statistics
Matches: 166, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
177 166 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (177 bp):
TCGTTGGTGCTCAATGCTGTCCAAAGTAAGGGGAGCCACAAGCCAAAGGGCTTGATGTTTACGAA
TCTGATGGTTGCAGGTCAGAAGGTGAGCGCACTAGTGGACACAGGTGCCTCACATCTTTTTATTT
CAGGTGATAGAGCCTAGAAGCTCGAACTAAAGGTGCAGAGCCTCACA
Done.