Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 214 of 402
Found at i:22053866 original size:157 final size:159
Alignment explanation
Indices: 22053472--22053867 Score: 370
Period size: 157 Copynumber: 2.5 Consensus size: 159
22053462 GATCCAGTCT
* * * * * * * ** *
22053472 GATCTTAGACTGGGAATGAACCCCGTATGCATAAGTCAACCCATGAAACAAGTGTGCCGGTACTG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTC
* * **
22053537 AGCCAGAT-GAAGAGGCATAATGTGCAAGCTAGGGATCGACCCGATCCCCCTTTGCATGCAGTCG
66 AGCCAGATCGGAGAGGCAGAATACGCAAGCTAGGGATCGACCCGATCCCCC-TTGCATGCAGTCG
* **
22053601 ATCCTACTACCATAACCCTCGGTCCGGTTG
130 ATCCTACTACCATAACCCTCGGTCCGATCC
** * *** * *
22053631 GGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAATAAACGAAACGGGCGTCCAGGCGCT
1 GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCT
* * * * * * * *
22053695 CAGCC-GACCAGAGAGGCAGAATACGCAAGCTGGGGATTGGCCTGATCCCCC-TGCGTGCTGTCG
65 CAGCCAGATCGGAGAGGCAGAATACGCAAGCTAGGGATCGACCCGATCCCCCTTGCATGCAGTCG
* ** *
22053758 ATCCTGCTGTCTTAACCCTCGGTCCGATCC
130 ATCCTACTACCATAACCCTCGGTCCGATCC
* * * *
22053788 GATCTTAGACTGGGAATGAACTTCGCATGCCTAAGTCAACCCACGAAACGAGCGTACGGGGGCTC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTC
22053853 AGCCAG-TCGGAGAGG
66 AGCCAGATCGGAGAGG
22053868 TCGGCCAGAA
Statistics
Matches: 183, Mismatches: 50, Indels: 10
0.75 0.21 0.04
Matches are distributed among these distances:
156 1 0.01
157 95 0.52
158 3 0.02
159 83 0.45
160 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.19
Consensus pattern (159 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTC
AGCCAGATCGGAGAGGCAGAATACGCAAGCTAGGGATCGACCCGATCCCCCTTGCATGCAGTCGA
TCCTACTACCATAACCCTCGGTCCGATCC
Found at i:22055381 original size:184 final size:184
Alignment explanation
Indices: 22055062--22055423 Score: 435
Period size: 184 Copynumber: 2.0 Consensus size: 184
22055052 GGGCTTAGAA
* * *
22055062 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGCCGCTCAGCCGGCCAG
1 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGCCGCTCAGCCAGCCAG
* * * *
22055127 AGAGGCAGAATGCAAAAGCCAGGGATCGGTCCGGTCCCCCCTGCATGCTGCTGGTCCTGCTGATG
66 AGAGGCAGAATACAAAAGCCAGGGATCGGCCCAGTCCCCCCTGCATGCTGCTGATCCTGCTGATG
* *
22055192 CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTCGAC
131 CAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTCGAC
* * * * *
22055246 ATGGAATGAACTCCGTATGCCTAAGTC-ACCCACGAAACGAGCGTGCGAG-CGCTCAGCCAGTCG
1 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACG-GCCGCTCAGCCAGCCA
* * ** * ** * *
22055309 GAGTGGTAGAATACGCACGCTGGGGATCGGCCCAGTCCCCCCTTGCGTGCTG-TCGATTCTGCT-
65 GAGAGGCAGAATACAAAAGCCAGGGATCGGCCCAGTCCCCCC-TGCATGCTGCT-GATCCTGCTG
* *
22055372 ATCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
128 AT-GCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
22055424 CTAAGTCAAC
Statistics
Matches: 149, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
183 63 0.42
184 86 0.58
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (184 bp):
ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGCCGCTCAGCCAGCCAG
AGAGGCAGAATACAAAAGCCAGGGATCGGCCCAGTCCCCCCTGCATGCTGCTGATCCTGCTGATG
CAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTCGAC
Found at i:22055539 original size:159 final size:157
Alignment explanation
Indices: 22055247--22055740 Score: 433
Period size: 159 Copynumber: 3.1 Consensus size: 157
22055237 TGCTTCGACA
* * ** * * *
22055247 TGGAATGAACTCCGTATGCCTAAGTC-ACCCACGAAACGAGCGTGCGAGCGCTCAGCC-AGTCGG
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATAAGCATGCGCGCGCTCAGCCGA-CCGG
* * * ** * * * * * * *
22055310 AGTGGTAGAATACGCACGCTGGGGATCGGCCCAGTCCCCCCTTGCGTGCTGTCGATTCTGCTATC
65 AGAGGCAGAATGCGCAAACCGGGGATCAGCCCGGT-CCCCCTTGCATACTGTCGATCCCGCTATC
* *
22055375 GCAACCCTTGATCCGATCTGATCTTAGAC
129 ACAACCCTCGATCCGATCTGATCTTAGAC
* * * * *
22055404 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCATGCGGGCGTTGAGCCGACCGG
1 T-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATAAGCATGCGCGCGCTCAGCCGACCGG
* * ** *
22055469 AGAGGCATAATGCGCAAACCGGGGATC-GACCCGGTGCCTTTCTGCGTACTGTC-AGTCCCGCTA
65 AGAGGCAGAATGCGCAAACCGGGGATCAG-CCCGGTCCCCCT-TGCATACTGTCGA-TCCCGCTA
* **
22055532 TCACAACCCTCGATCCG-GCTGGGGCTTAGAC
127 TCACAACCCTCGATCCGATCT-GATCTTAGAC
* ** * **
22055563 ATGGAATGACCTCTC-TATGCCTAAGCCAACCCACAAAATGGGCGTGCGCGCGCTCAGCCGGTCG
1 -TGGAATGAACTC-CGTATGCCTAAGCCAACCCACAAAATAAGCATGCGCGCGCTCAGCCGACCG
* * * * *
22055627 GAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCCCCCTTGCATGCTGTCGATCCTGCTACC
64 GAGAGGCAGAATGCGCAAACCGGGGATCAGCCCGGTCCCCCTTGCATACTGTCGATCCCGCTATC
* *
22055692 ACAACCCTCGGTTCGATCTGATCTTAGAC
129 ACAACCCTCGATCCGATCTGATCTTAGAC
22055721 TAGGAATGAACTCCGTATGC
1 T-GGAATGAACTCCGTATGC
22055741 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 53, Indels: 27
0.77 0.15 0.08
Matches are distributed among these distances:
157 3 0.01
158 85 0.31
159 178 0.66
160 4 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATAAGCATGCGCGCGCTCAGCCGACCGGA
GAGGCAGAATGCGCAAACCGGGGATCAGCCCGGTCCCCCTTGCATACTGTCGATCCCGCTATCAC
AACCCTCGATCCGATCTGATCTTAGAC
Found at i:22055755 original size:26 final size:26
Alignment explanation
Indices: 22055714--22055766 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22055704 TCGATCTGAT
22055714 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
22055740 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22055766 C
1 C
22055767 CTGAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22056361 original size:11 final size:11
Alignment explanation
Indices: 22056345--22056369 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22056335 AGGTTAGATT
22056345 CTCCGACGATG
1 CTCCGACGATG
22056356 CTCCGACGATG
1 CTCCGACGATG
22056367 CTC
1 CTC
22056370 AGGCGATGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.40, G:0.24, T:0.20
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:22056485 original size:26 final size:26
Alignment explanation
Indices: 22056447--22056499 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22056437 GGCTCAAAAT
22056447 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
22056473 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
22056499 C
1 C
22056500 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:22056803 original size:159 final size:157
Alignment explanation
Indices: 22056472--22056828 Score: 385
Period size: 157 Copynumber: 2.3 Consensus size: 157
22056462 AACTCCGTAT
* * * * *
22056472 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTACGCATAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
* * * * * * *
22056537 CCAGTCGGAGAGGCAGAATGTGCAAGTTGGGGATCGACCGGTCCCCCCTGCGTGCTGTCGATCCT
66 CCAGCCGGAAAGGCAGAATGCGCAAGCTGAGGATCGACCGATCCCCCCTGCGTGCTGTCGATCCC
* *
22056602 GCTGCCACAACCCTCGATCCGGTCTGA
131 GCTACCACAACCCTCGATCCAGTCTGA
* * * * * *
22056629 TCTTAGAC-TAGGAATGAACTCTGTACGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTACGCATAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * * * *
22056693 ACCGGCCGTAAAGGCATAATGCGTAAGCTGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGAT
65 ACCAGCCGGAAAGGCAGAATGCGCAAGCTGAGGATC-GACCGATCCCCC-CTGCGTGCTGTCGAT
* *
22056758 CCCGTTACCACAACCCTCGATCCAG-CTGGG
128 CCCGCTACCACAACCCTCGATCCAGTCT-GA
** * *
22056788 GCTTAGACATGGAATGAACTCCCAATGCCTAAGCCAACCCA
1 GCTTAGACATGGAATGAACTCCGTACGCATAAGCCAACCCA
22056829 TAAAAAGGCG
Statistics
Matches: 161, Mismatches: 34, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
156 1 0.01
157 78 0.48
158 12 0.07
159 69 0.43
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTACGCATAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
CCAGCCGGAAAGGCAGAATGCGCAAGCTGAGGATCGACCGATCCCCCCTGCGTGCTGTCGATCCC
GCTACCACAACCCTCGATCCAGTCTGA
Found at i:22057166 original size:26 final size:26
Alignment explanation
Indices: 22057128--22057180 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22057118 CTGATAAGAT
*
22057128 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22057154 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
22057180 C
1 C
22057181 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22057452 original size:159 final size:156
Alignment explanation
Indices: 22057154--22057655 Score: 494
Period size: 159 Copynumber: 3.2 Consensus size: 156
22057144 ATTCCATATG
* * *
22057154 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACAAGCGTGCGGGCACTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAAC
* * * * * ** *
22057219 CGACCGGATAGGCAGAATGCGCAAGCTAGGGATCAGCCCGGTCCCACCCTGTGTGCTATCGATCT
66 CGACCAGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGGT-CC-CCCTGTGTGCTGCCGATCC
* ** *
22057284 TACCACCACAACCCTC-ATTCCGATCTGAT
129 TGCTGCCACAACCCTCGA-TCAG-TCTGAT
* * *
22057313 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGCCAACCCACGAAACAAGCGTACGGGCGCTGAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAA
* * * *
22057377 CCGACCAAAGAGGCATAATGCGCAAGCCAGGGATCGGTCCGGTCCCCCTTTGCGTGCTGCC-AGT
65 CCGACCAGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGGTCCCCC--TGTGTGCTGCCGA-T
* * * **
22057441 CCCGCTGCCACAACCCTCGATCTGGCTGGGG
127 CCTGCTGCCACAACCCTCGATCAGTCT-GAT
* ** ** * *
22057472 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCATACGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAAC
* *
22057537 CGACCAGAGAGGTAAAATGCGCAAGTC-GGAGATCGGCCCGGTCCCCCTGTGTGCTGCCGATCCT
66 CGACCAGAGAGGCAAAATGCGCAAGCCAGG-GATCGGCCCGGTCCCCCTGTGTGCTGCCGATCCT
*
22057601 GCTGCCTCAACCCTCGATCTAGT-TCGAT
130 GCTGCCACAACCCTCGATC-AGTCT-GAT
* *
22057629 CTTAGA-TTGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
22057656 TTAGACTGGG
Statistics
Matches: 281, Mismatches: 51, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
156 1 0.00
157 58 0.21
158 10 0.04
159 210 0.75
160 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAAC
CGACCAGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTGTGTGCTGCCGATCCTG
CTGCCACAACCCTCGATCAGTCTGAT
Found at i:22057665 original size:26 final size:26
Alignment explanation
Indices: 22057629--22057681 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22057619 CTAGTTCGAT
*
22057629 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
22057655 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
22057681 C
1 C
22057682 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:22058117 original size:684 final size:686
Alignment explanation
Indices: 22057153--22058393 Score: 1697
Period size: 684 Copynumber: 1.8 Consensus size: 686
22057143 AATTCCATAT
*
22057153 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACAAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAA
* * * * **
22057218 CCGACCGGATAGGCAGAATGCGCAAGCTAGGGATCAGCCCGGTCCCACCCTGTGTGCTATCGATC
66 CCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCACCCTACGTGCTATCGATC
* *
22057283 TTACCACCACAACCCTCATTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGCCA
131 CTACCACCACAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGCCA
* * *
22057348 ACCCACGAAACAAGCGTACGGGCGCTGAACCGACCAAAGAGGCATAATGCGCAAGCCAGGGATCG
196 ACCAACGAAACAAGCATACGGGCGCTGAACCGACCAAAGAGGCATAATGCGCAAGCCAAGGATCG
* * * * **
22057413 GTCCGGTCCCCCTTTGCGTGCTGCC-AGTCCCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAG
261 CTCCGATCCCCCTCTGCGTGCTACCGA-TCCCGCTGCCACAACCCTCGATCCAGCTGGGGCTTAG
* * **
22057477 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCATACGGGTGCTCAACCGACC
325 ACATAGAATGAACTCCCTATGCCTAAGCCAACACATAAAACGGGCATACGGGCACTCAACCGACC
* ** * *
22057542 -AGAGAGGTAAAATGCGCAAGTCGGAGATCGGCCCGGT-CCCCCTGTGTGCTGCCGATCCTGCTG
390 GA-AAAGCCAAAATGCGCAAGTCGGAGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTACTG
* * *
22057605 CCTCAACCCTCGATCT-AGTTCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGGAT
454 CCGCAACCCTCGATCTGA-TCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGAGGAT
** *
22057669 GAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGACGCTCAGTCGATCGGAGAGGCT
518 GAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGTCGATCGGAGAGGCT
22057734 GGCCTGAAAGGCATAATGCGTAAGCCGAGGATCAGCCTGATCCCCCTCTGCATGCTACCGATCCC
583 GGCCTGAAAGGCATAATGCGTAAGCCGAGGATCAGCCTGATCCCCCTCTGCATGCTACCGATCCC
22057799 GCTACTAGTCCTGCTACCATAACCCTTGGTCCAGTTGGG
648 GCTACTAGTCCTGCTACCATAACCCTTGGTCCAGTTGGG
* **
22057838 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAA
* *
22057903 TCGACCAGAGAGGTAGAATGCACAAGCCAGGGATC-GACCCGGTCCC-CCCTACGTGCTATCGAT
66 CCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCAG-CCCGGTCCCACCCTACGTGCTATCGAT
* * * ** * * * * **
22057966 CCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGATTGAACTCTGTATGCCTAAGTT
130 CCTACCACCACAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGCC
* * * * * *** *
22058031 AACCAATGAAACGAGCATGCGGGCGCTGAGCCTGTCGGGA-AGGCATAATGCGCAAGCTAAGGAT
195 AACCAACGAAACAAGCATACGGGCGCTGAACC-GACCAAAGAGGCATAATGCGCAAGCCAAGGAT
* * * * *
22058095 TGACT-CGATCCTCCTCTGCGTGCTACCGATCCTGCTGCCATAACCCTCGGTCCAGCTGGGGCTT
259 CG-CTCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCTCGATCCAGCTGGGGCTT
* * * * * *
22058159 GGACATAGAATGAACTTCCTATGCCTAAGCCAACACATGAAATGGGCGTGCGGGCACTCAACCGA
323 AGACATAGAATGAACTCCCTATGCCTAAGCCAACACATAAAACGGGCATACGGGCACTCAACCGA
* * *
22058224 CCGAAAAGCCAAAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGTTGCCGATCCTACT
388 CCGAAAAGCCAAAATGCGCAAGTCGGAGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTACT
* *
22058289 GTCGCAACCCTCGGTCTGATCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGAGGAT
453 GCCGCAACCCTCGATCTGATCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGAGGAT
*
22058354 GAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGC
518 GAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGC
22058394 AGGCGTTCAG
Statistics
Matches: 474, Mismatches: 75, Indels: 14
0.84 0.13 0.02
Matches are distributed among these distances:
684 252 0.53
685 221 0.47
686 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (686 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAA
CCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCACCCTACGTGCTATCGATC
CTACCACCACAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGCCA
ACCAACGAAACAAGCATACGGGCGCTGAACCGACCAAAGAGGCATAATGCGCAAGCCAAGGATCG
CTCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCTCGATCCAGCTGGGGCTTAGA
CATAGAATGAACTCCCTATGCCTAAGCCAACACATAAAACGGGCATACGGGCACTCAACCGACCG
AAAAGCCAAAATGCGCAAGTCGGAGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTACTGCC
GCAACCCTCGATCTGATCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGAGGATGAA
CTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGTCGATCGGAGAGGCTGGC
CTGAAAGGCATAATGCGTAAGCCGAGGATCAGCCTGATCCCCCTCTGCATGCTACCGATCCCGCT
ACTAGTCCTGCTACCATAACCCTTGGTCCAGTTGGG
Found at i:22059545 original size:158 final size:156
Alignment explanation
Indices: 22059042--22059855 Score: 557
Period size: 158 Copynumber: 5.1 Consensus size: 156
22059032 GTGGCTCAAA
* * * * ***
22059042 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGAATGCTCA
1 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
22059107 G-TCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCAAGTCCCCCCTGCATGCTGTCGAC
66 GCT-GACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCGA-TCCCCCCTGCGTGCTGTCGAT
* * *
22059171 CCAGCTGCTGCAACCCTCAGTCCGATCGG
129 CCA-CTGCCGCAACCCTCAGTCCGGTCTG
* * * * * * ** *
22059200 ATATTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGAACTGA
1 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * ** * * * * *
22059265 G-TCGACCGGAGAGGCATAATGCGCAAGCCGGCAATCGGCCCAGTCCCCCTCTGCGTGTTGCCGG
66 GCT-GACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCGA-TCCCCC-CTGCGTGCTGTCGA
* **
22059329 TCCCACTGCCACAACCCTC-GATCC-AACTGG
128 T-CCACTGCCGCAACCCTCAG-TCCGGTCT-G
** * * * *
22059359 GGCATAGACAT-AGAATGAACTCCT-TATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCT
1 ATCTTAGAC-TGGGAATGAACT-CTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCT
* *
22059422 CAGCTGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCGATCCCCTCCTGCGTGCTATCGA
64 CAGCTGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCGATCCCC-CCTGCGTGCTGTCGA
* *
22059487 TCTTACTGCCGCAACCCTCAGTCTGGTCTG
128 TC-CACTGCCGCAACCCTCAGTCCGGTCTG
* ** * * * *
22059517 ATCTTAGACTGGGAATGAACTCTGTATGCATAATTCAACCCACGAAACGAGTGTGCGGGCACTGA
1 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * *
22059582 GCCGATCGAAGAGGCATAATGCACAAGTCGGGGATCGACCTGGTCCCCCTCTCCGTGCTGCCGGT
66 GCTGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACC-GATCCCCC-CTGCGTGCTGTCGAT
* * *
22059647 ACCGCTGCCACAACCCTCGGTCCGG-CTGG
129 -CCACTGCCGCAACCCTCAGTCCGGTCT-G
** * * * **
22059676 GGCTTAGACTTGGAATGAACTCCT-TATGCCTAAGCCAACCCATGAAATGGGCGTGCGGTTGCTC
1 ATCTTAGACTGGGAATGAACT-CTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC
* * * * * * * * *
22059740 AGCCGGCC-AGAGAGGTAGAATGTGCAAGTCAGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGA
65 AGCTGACCGA-AGAGGCAGAATGCGCAAGCCGGGGATC-GACCGATCCCCCCTGCGTGCTGTCGA
** * * ** * *
22059804 TACTGCTACCGTAACCCTTGGTCAGGTCCG
128 T-CCACTGCCGCAACCCTCAGTCCGGTCTG
22059834 ATCTTAGACTGGGAATGAACTC
1 ATCTTAGACTGGGAATGAACTC
22059856 CTTATGCTTA
Statistics
Matches: 513, Mismatches: 122, Indels: 43
0.76 0.18 0.06
Matches are distributed among these distances:
157 5 0.01
158 267 0.52
159 229 0.45
160 12 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
GCTGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCGATCCCCCCTGCGTGCTGTCGATCC
ACTGCCGCAACCCTCAGTCCGGTCTG
Found at i:22059630 original size:317 final size:314
Alignment explanation
Indices: 22059054--22059862 Score: 900
Period size: 317 Copynumber: 2.5 Consensus size: 314
22059044 CTTAGACTGG
* * * * * * *
22059054 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGAATGCTCAGTCGGCCGGAGA
1 GAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCGTACGGATGCTCAG-CTGCCGAAGA
* * * * * *
22059119 GGCAGAATGCACAAGCCGGGGATCGGCCAAGTCCCCCCTGCATGCTGTCGACCCAGCTGCTGCAA
65 GGCAGAATGCGCAAGCCGGGGATCGACCGA-TCCCCCCTGCATGCTGTCGATCTA-CTGCCGCAA
* * * * * * * *
22059184 CCCTCAGTCCGATCGGATATTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATG
128 CCCTCAGTCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACG
* * * *
22059249 AGCGTGCAGGAACTGAGTCGACCGGAGAGGCATAATGCGCAAGCCGGCAATCGGCCCAGTCCCCC
193 AGCGTGCAGGAACTGAGCCGACCGAAGAGGCATAATGCACAAGCCGGCAATCGACCCAGTCCCCC
* * *
22059314 TCTGCGTGTTGCCGGTCCCACTGCCACAACCCTCGATCCAACTGGGGCATAGACATA
258 TCTCCGTGCTGCCGGTACCACTGCCACAACCCTCGATCCAACTGGGGCATAGACATA
** *
22059371 GAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAGCTGATCGAAGA
1 GAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCGTACGGATGCTCAGCTG-CCGAAGA
* *
22059436 GGCAGAATGCGCAAGCCGGGGATCGACCGATCCCCTCCTGCGTGCTATCGATCTTACTGCCGCAA
65 GGCAGAATGCGCAAGCCGGGGATCGACCGATCCCC-CCTGCATGCTGTCGATC-TACTGCCGCAA
* * * *
22059501 CCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAATTCAACCCACGAAACG
128 CCCTCAGTCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACG
* * * * * ** **
22059566 AGTGTGCGGGCACTGAGCCGATCGAAGAGGCATAATGCACAAGTCGGGGATCGACCTGGTCCCCC
193 AGCGTGCAGGAACTGAGCCGACCGAAGAGGCATAATGCACAAGCCGGCAATCGACCCAGTCCCCC
* * ** * * *
22059631 TCTCCGTGCTGCCGGTACCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACTTG
258 TCTCCGTGCTGCCGGTACCACTGCCACAACCCTCGATCCAACTGGGGCATAGACATA
* * * *
22059688 GAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGTTGCTCAGCCGGCC-AGAG
1 GAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCGTACGGATGCTCAG-CTGCCGA-AG
* * * * * * * * *
22059752 AGGTAGAATGTGCAAGTCAGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATACTGCTACCGTA
64 AGGCAGAATGCGCAAGCCGGGGATC-GACCGATCCCCCCTGCATGCTGTCGAT-CTACTGCCGCA
** *
22059817 ACCCTTGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCTTATGC
127 ACCCTCAGTCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
22059863 TTAGATTGGG
Statistics
Matches: 411, Mismatches: 74, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
316 8 0.02
317 390 0.95
318 13 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (314 bp):
GAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCGTACGGATGCTCAGCTGCCGAAGAG
GCAGAATGCGCAAGCCGGGGATCGACCGATCCCCCCTGCATGCTGTCGATCTACTGCCGCAACCC
TCAGTCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGC
GTGCAGGAACTGAGCCGACCGAAGAGGCATAATGCACAAGCCGGCAATCGACCCAGTCCCCCTCT
CCGTGCTGCCGGTACCACTGCCACAACCCTCGATCCAACTGGGGCATAGACATA
Found at i:22059768 original size:159 final size:158
Alignment explanation
Indices: 22059044--22059799 Score: 573
Period size: 159 Copynumber: 4.8 Consensus size: 158
22059034 GGCTCAAAAT
* * * * * *** *
22059044 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGAATGCTCAGT
1 CTTAGACTTGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
22059109 CGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCAAGTCCCCC-CTGCATGCTGTC-G-AC
66 CGACC-GAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGGTA-
** * *
22059171 CCAGCTGCTGCAACCCTCAGTCC-GATCGGAT
129 CCA-CTGCCACAACCCTCAGTCCGGCT-GGAG
* * * * * ** *
22059202 ATTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGAACTGAG
1 CTTAGACTT-GGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * ** * * *
22059266 TCGACCGGAGAGGCATAATGCGCAAGCCGGCAATCGGCCCAGTCCCCCTCTGCGTGTTGCCGGTC
65 CCGACC-GAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGGTA
** *
22059331 CCACTGCCACAACCCTC-GATCCAACTGGGG
129 CCACTGCCACAACCCTCAG-TCCGGCTGGAG
* * * * *
22059361 CATAGACATAGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAGC
1 CTTAGACTTGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** *
22059426 TGATCGAAGAGGCAGAATGCGCAAGCCGGGGATC-GACCGAT-CCCCTCCTGCGTGCTATCGAT-
66 CGACCG-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCT-CTGCGTGCTGCCGGTA
* * * *
22059488 CTTACTGCCGCAACCCTCAGTCTGGTCT-GAT
129 C-CACTGCCACAACCCTCAGTCCGG-CTGGAG
* * ** * * * *
22059519 CTTAGACTGGGAATGAACT-CTGTATGCATAATTCAACCCACGAAACGAGTGTGCGGGCACTGAG
1 CTTAGACTTGGAATGAACTCCT-TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
22059583 CCGATCGAAGAGGCATAATGCACAAGTCGGGGATCGACCTGGTCCCCCTCTCCGTGCTGCCGGTA
65 CCGACCG-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGGTA
* * *
22059648 CCGCTGCCACAACCCTCGGTCCGGCTGGGG
129 CCACTGCCACAACCCTCAGTCCGGCTGGAG
* * **
22059678 CTTAGACTTGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGTTGCTCAGC
1 CTTAGACTTGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
22059743 CGGCCAGAGAGGTAGAATGTGCAAGTCAGGGATCGGCCCGGTCCCCC-CTGCATGCTG
66 CGACC-GAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTG
22059800 TCGATACTGC
Statistics
Matches: 462, Mismatches: 117, Indels: 38
0.75 0.19 0.06
Matches are distributed among these distances:
157 9 0.02
158 214 0.46
159 224 0.48
160 15 0.03
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACTTGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGACCGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGGTACC
ACTGCCACAACCCTCAGTCCGGCTGGAG
Found at i:22061165 original size:11 final size:11
Alignment explanation
Indices: 22061146--22061177 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
22061136 CGGTTAAGCT
22061146 CTCCGACGATG
1 CTCCGACGATG
*
22061157 CTTCGACGATG
1 CTCCGACGATG
22061168 CTCCGACGAT
1 CTCCGACGAT
22061178 AGTGCCCCGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.34, G:0.25, T:0.22
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:22061619 original size:26 final size:26
Alignment explanation
Indices: 22061590--22061642 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22061580 CCGGTCTTAT
22061590 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
22061616 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22061642 C
1 C
22061643 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22062081 original size:158 final size:157
Alignment explanation
Indices: 22061787--22062146 Score: 388
Period size: 158 Copynumber: 2.3 Consensus size: 157
22061777 CCAGCTAGGG
* * *
22061787 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCTATGAAACGAGCGTACGGGCACTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTACGGGCACTCAAC
* *
22061852 CAACCGAAGAGGCAGAATGTGCAAGCCGGGGATAGGCCCGATCCCCCCTACATGCTGTCGATCCT
66 CAACCGAAGAGGCAGAATGTGCAAGCCAGGGATAGACCCGATCCCCCCTACATGCTGTCGATCCT
22061917 ACTGCCACAACACCCAGTCCGATCAGAT
131 A-TGCCACAACACCCAGTCCGATCAGAT
* * * * * *
22061945 CTTAGA-ATGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTACGGGCACTCAA
* * * * * * *
22062009 CCAACCGAAGAGGCATAATGTGCAAGCCAGGGATCGACCCGGTCCCCATCTGCGTGCT-TCGGTC
65 CCAACCGAAGAGGCAGAATGTGCAAGCCAGGGATAGACCCGATCCCC-CCTACATGCTGTCGATC
* * * **
22062073 TCGT-TGCCACAAC-CCTCGGTCTGA-CTGGGG
129 -C-TATGCCACAACACC-CAGTCCGATC-AGAT
** *
22062103 CTTAGACATGGAATGAACTCCCAATGCCTAAGCCAACCCATGAA
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAA
22062147 CGGGCGTCCG
Statistics
Matches: 168, Mismatches: 27, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
157 5 0.03
158 152 0.90
159 10 0.06
160 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.25, T:0.18
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTACGGGCACTCAAC
CAACCGAAGAGGCAGAATGTGCAAGCCAGGGATAGACCCGATCCCCCCTACATGCTGTCGATCCT
ATGCCACAACACCCAGTCCGATCAGAT
Found at i:22063069 original size:26 final size:26
Alignment explanation
Indices: 22063028--22063077 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
22063018 GTTCGATCTG
22063028 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
* *
22063054 AGACTGGGGATTAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
22063078 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:22063795 original size:26 final size:26
Alignment explanation
Indices: 22063746--22063797 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22063736 GGCTCAAATA
**
22063746 TTAGACTGGGAATGAACTTTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
22063772 TTAGACATGGG-ATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
22063798 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:22064142 original size:159 final size:158
Alignment explanation
Indices: 22063770--22064272 Score: 474
Period size: 158 Copynumber: 3.2 Consensus size: 158
22063760 AACTTTGTAT
* * * *
22063770 GCTTAGACATGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* * * ** *
22063835 TCGACCGGAGAGGCAGAATGCACAAGTCAGGGATTGGCCCGATCCCCCATGCGTGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCATGCGTGCTATCGATCC
* *
22063900 TGCTGCCACAACCCTCGGTCCGGTCTGA
131 CGCTACCACAACCCTCGGTCCGGTCTGA
* *
22063928 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGA
* * * * * * *
22063992 GCCGATCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGTGTGTTATCGGT
65 GCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCC-ATGCGTGCTATCGAT
* * *
22064057 CCCGCTACCACAGCCCTTGGTCCGG-CTGGG
129 CCCGCTACCACAACCCTCGGTCCGGTCT-GA
* * * * * *
22064087 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCAACGAAATGGGTGTGCGGGCGC-GCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTG-A
* * * * ** * * * * * *
22064151 GCTGACCGGATAGGCAGATTACGCAAGTCGGGGATTGGTCGGGTCCCCCCTGTGTGCTACCGATC
65 GCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCATGCGTGCTATCGATC
* ** ** **
22064216 CTGCTGTCGTAACCCTCGGTCCGGTCCAA
130 CCGCTACCACAACCCTCGGTCCGGTCTGA
* *
22064245 TCTTAGAC-TGGGAATGAACTCAGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
22064273 TTAGACTGGG
Statistics
Matches: 280, Mismatches: 58, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 153 0.55
159 124 0.44
160 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
CCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCATGCGTGCTATCGATCC
CGCTACCACAACCCTCGGTCCGGTCTGA
Found at i:22064282 original size:26 final size:26
Alignment explanation
Indices: 22064246--22064298 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22064236 CCGGTCCAAT
22064246 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
* *
22064272 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
22064298 C
1 C
22064299 CTAAGTCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:22065468 original size:160 final size:159
Alignment explanation
Indices: 22065008--22065540 Score: 594
Period size: 160 Copynumber: 3.4 Consensus size: 159
22064998 CTCCTTATGC
* * * * * *
22065008 TTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAATGAGCCTGC-GGGCGCTCAGC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGGTGCTGAGC
* * * * * * * *
22065072 CGATCGGAGAGGAAGAATGCGCAAGACGGGGATCGACCCGACCCCCCCTGTGTGCTGTCGATCCT
66 CGGTCGAAGAGGCATAATGCGCAAGACGGGGATCGGCCCGTCCCCCTCTGCGTGCTGTCGATCCT
* * * ** *
22065137 ACTACTACAACCCTCA-GT-TTGATCCGAT
131 ACTACCACAACCCT-AGGTCTGGCTGGGGT
* * * *
22065165 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGT--TG
1 -TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG-GTGCTG
* * * * * *
22065227 AGTCGGTCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCATGCTGCCGG
63 AGCCGGTCGAAGAGGCATAATGCGCAAGACGGGGATCGGCCC-GTCCCCCTCTGCGTGCTGTCGA
* *
22065292 TTCTGCTACCACAACCCTAGGTCTGGCTGGGGT
127 TCCTACTACCACAACCCTAGGTCTGGCTGGGGT
*
22065325 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGGTGCTGAA
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGGTGCTGAG
* * * *
22065389 CCGGCCGAAGAGGCATAATGCGTAAGTCGGGGATCGGCCCAGTCCCCCTTTGCGTGCTGTCGATC
65 CCGGTCGAAGAGGCATAATGCGCAAGACGGGGATCGGCCC-GTCCCCCTCTGCGTGCTGTCGATC
* * *
22065454 CCACTACCACAACCCTCGGTCTGGCTGGGGC
129 CTACTACCACAACCCTAGGTCTGGCTGGGGT
22065485 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG
22065541 CGCTCAGCCG
Statistics
Matches: 314, Mismatches: 50, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
157 1 0.00
158 84 0.27
159 83 0.26
160 145 0.46
161 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGGTGCTGAGC
CGGTCGAAGAGGCATAATGCGCAAGACGGGGATCGGCCCGTCCCCCTCTGCGTGCTGTCGATCCT
ACTACCACAACCCTAGGTCTGGCTGGGGT
Found at i:22065592 original size:319 final size:317
Alignment explanation
Indices: 22065008--22065593 Score: 712
Period size: 319 Copynumber: 1.8 Consensus size: 317
22064998 CTCCTTATGC
* * *
22065008 TTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAATGAGCCTGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAAAGAGCCTGCGGGCGCTCAACC
* * * *
22065073 GATCGGAGAGGAAGAATGCGCAAGACGGGGATCGACCCGACCCCCCCTGTGTGCTGTCGATCCTA
66 GACCGAAGAGGAAGAATGCGCAAGACGGGGATCGACCCGACCCCCCCTGCGTGCTGTCGATCCCA
* * * * *
22065138 CTACTACAACCCTCAGTTTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACC
131 CTACCACAACCCTCAGTTGGATCCGAGCTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACC
* * * * * *
22065203 CACGAAACGAGCGTGCGGGCGTTGAGTCGGTCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCC
196 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGACCAGCC
22065268 CGGTCCCCCTCTGCATGCTGCCGGTTCTGCTACCACAACCCTAGGTCTGGCTGGGGT
261 CGGTCCCCCTCTGCATGCTGCCGGTTCTGCTACCACAACCCTAGGTCTGGCTGGGGT
* * * *
22065325 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAG-GCGTGCGGGGTGCTGAA
1 TTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAA-AGAGCCTGC-GGGCGCTCAA
* * * * * * * **
22065389 CCGGCCGAAGAGGCATAATGCGTAAGTCGGGGATCGGCCCAGTCCCCCTTTGCGTGCTGTCGATC
64 CCGACCGAAGAGGAAGAATGCGCAAGACGGGGATCGACCC-GACCCCCCCTGCGTGCTGTCGATC
* * * * *
22065454 CCACTACCACAACCCTCGGTCTGGCT-GGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGC
128 CCACTACCACAACCCTCAGT-TGGATCCGAGCTTAGAC-TGGGAATGAACTCCCTATGCATAAGC
* * * *
22065517 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCC-AGAGAGGTAGAATGCGTAAGCTGGGGA
191 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGA-AGAGGCAGAATGCGCAAGCCGGGGA
* *
22065581 CCGGTCCGGTCCC
255 CCAGCCCGGTCCC
22065594 TCCTGCGTGC
Statistics
Matches: 221, Mismatches: 42, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
317 47 0.21
318 41 0.19
319 129 0.58
320 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (317 bp):
TTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAAAGAGCCTGCGGGCGCTCAACC
GACCGAAGAGGAAGAATGCGCAAGACGGGGATCGACCCGACCCCCCCTGCGTGCTGTCGATCCCA
CTACCACAACCCTCAGTTGGATCCGAGCTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACC
CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGACCAGCC
CGGTCCCCCTCTGCATGCTGCCGGTTCTGCTACCACAACCCTAGGTCTGGCTGGGGT
Found at i:22066014 original size:26 final size:26
Alignment explanation
Indices: 22065974--22066025 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
22065964 CGGTTAGATT
*
22065974 TTAGACTGGGAATGATCTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* *
22066000 TTAGACTGGGGATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
22066026 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:22066133 original size:343 final size:336
Alignment explanation
Indices: 22065339--22066145 Score: 806
Period size: 343 Copynumber: 2.4 Consensus size: 336
22065329 ACATGGAATG
* * ** * * * **
22065339 AACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGGTGCTGAACCGGCCGAAGAGGC
1 AACTCCGTATGCCTAAGTCAACCCACAAAACGA-GCGTGC-GGGCGCTCAGCCAACCGAAGAGGC
* * * * *
22065403 ATAATGCGTAAGTCGGGGATCGGCCCAGTCCCCCTTTGCGTGCTGTCGATCCCACTACCACAACC
64 AGAATGCGCAAGTCGGGGATTGG-CCGGTCCCCCTCTGCGTGCTGTCGATCCCACTACCACAACC
* *
22065468 CTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAG
128 CTCGGTCCGGCTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAG
* * * * * *
22065533 CGTGCGGGCGCTCAGCCGGCCAGAGAGGTAGAATGCGTAAGCTGGGGACCGGTCCGGTCCCTCCT
193 CGTACGGGCGCTCAGCCGGCCAGAGAGGTAGAATGCGAAAGCCGGGGACCAGCCCGATCCCTCC-
*
22065598 GCGTGCTACCGATCCTGCTATCGCAACCCTCGGTCCAGTTCGATCTTAGACTAGGAATGAACTCC
257 GCGTG---CCGATCCTGC--TCGCAACCCTCGGTCCAGTTAGATCTTAGACTAGGAATGAACTCC
22065663 ATATCCTTAGACTGGGGACA
317 ATATCCTTAGACTGGGGACA
* *
22065683 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAACCGAAAAGGCAG
1 AACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCAACCGAAGAGGCAG
* * * * * * ** *
22065748 AATGCACAAGCCGCGGATTGGCCTGATCCCCCTCTACGTGCTG-CTGGTCCTGCTGCCACAACCC
66 AATGCGCAAGTCGGGGATTGGCC-GGTCCCCCTCTGCGTGCTGTC-GATCCCACTACCACAACCC
* *
22065812 TCGGTCCGGCTGGGGGTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGC
129 TCGGTCCGGCTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGC
* * *
22065877 GTACGGGTGCTCAGCCGGTC-GAAGAGGTAGAATGCGAAAGCCGGGGATCAGCCCGATCCC-CC-
194 GTACGGGCGCTCAGCCGGCCAG-AGAGGTAGAATGCGAAAGCCGGGGACCAGCCCGATCCCTCCG
* * * * * * * * * *
22065939 C-TG-C-ATGCTGC-CGTAACCCTTGGTTCGGTTAGATTTTAGACTGGGAATGATCTCCGTATGC
258 CGTGCCGATCCTGCTCGCAACCCTCGGTCCAGTTAGATCTTAGACTAGGAATGAACTCCATATCC
**
22066000 TTAGACTGGGGATG
323 TTAGACTGGGGACA
* * *
22066014 AACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGTGCTCAGTCAGCCAGAGAGGCTG
1 AACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTG-CGG-GCGC--TCAGCC--A-A--C--
* *
22066079 ACTGGAGAGGCAGAATGCGCAAGTCGGGGATTGGCTCGGTCCCCC-CTGCGTGCTGTCGATCCTA
55 -C-GAAGAGGCAGAATGCGCAAGTCGGGGATTGGC-CGGTCCCCCTCTGCGTGCTGTCGATCCCA
22066143 CTA
117 CTA
22066146 TTGGTCCTGC
Statistics
Matches: 381, Mismatches: 63, Indels: 39
0.79 0.13 0.08
Matches are distributed among these distances:
331 88 0.23
332 2 0.01
333 3 0.01
334 6 0.02
335 7 0.02
337 1 0.00
338 1 0.00
339 2 0.01
340 2 0.01
342 6 0.02
343 192 0.50
344 69 0.18
345 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (336 bp):
AACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCAACCGAAGAGGCAG
AATGCGCAAGTCGGGGATTGGCCGGTCCCCCTCTGCGTGCTGTCGATCCCACTACCACAACCCTC
GGTCCGGCTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGT
ACGGGCGCTCAGCCGGCCAGAGAGGTAGAATGCGAAAGCCGGGGACCAGCCCGATCCCTCCGCGT
GCCGATCCTGCTCGCAACCCTCGGTCCAGTTAGATCTTAGACTAGGAATGAACTCCATATCCTTA
GACTGGGGACA
Found at i:22066220 original size:26 final size:26
Alignment explanation
Indices: 22066182--22066234 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22066172 CTAGTTCGAT
22066182 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22066208 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
22066234 C
1 C
22066235 CTATGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22067587 original size:159 final size:156
Alignment explanation
Indices: 22067085--22067587 Score: 426
Period size: 159 Copynumber: 3.2 Consensus size: 156
22067075 ACCCATATGG
* * * *
22067085 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCTACGAAACGAGCGTGCTGGCGCTC-GA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG-
* * * **
22067149 CCGATCAGAGAGGCAGAATGCGCAAGCAGGGAATCGGTCCTATCCCCCCTGAGTGCTGT-CGATC
65 CCGGTCAGAGAGGCAGAATGCGCAAGC-GGGGATCGGCCCGGTCCCCCCTGAGTG-T-TCCGATC
* * *
22067213 CTACTGCCGCAACCCTCAGTC-CAGTTTGAT
127 CTGCTGCCGCAACCCTCGGTCTCA-TTCGAT
* * * ** * * *
22067243 CTTAGA-TTGGGAATGAACTCCATATGCATAAATCAACCCACGAAATGAGTGTGCGGGCGA-TGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-ACTCA
* * * * * * *
22067306 ACTGGTC-GAAAAGGCATAATGCGCAAGACAGGGATCGACCCGGTCCCCCTCTGCGTGCTTCCGA
64 GCCGGTCAG-AGAGGCAGAATGCGCAAG-CGGGGATCGGCCCGGTCCCCC-CTGAGTG-TTCCGA
* ** * **
22067370 TCCTGCTGCCACAACCCTCGGTCTGGTTGGGG
125 TCCTGCTGCCGCAACCCTCGGTCTCATTCGAT
* * * * *
22067402 ATTAGACATGGAATGAACTCCCTATGCCTAAGCCGACCCACGAAACGGGCGCGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* *
22067467 CGGTCAGAGAGGTAGAATGCGCAAGTCGGGGGATCGGCCCGGTCCCCCCTGTGTGTTACCGATCC
66 CGGTCAGAGAGGCAGAATGCGCAAG-C-GGGGATCGGCCCGGTCCCCCCTGAGTGTT-CCGATCC
* * *
22067532 TGCTGTCGCAACCCTCGGTCTTATCCGAT
128 TGCTGCCGCAACCCTCGGTCTCATTCGAT
*
22067561 CTTAGAC-TGGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
22067588 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 64, Indels: 27
0.75 0.18 0.08
Matches are distributed among these distances:
157 2 0.01
158 86 0.32
159 159 0.60
160 20 0.07
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGGTCAGAGAGGCAGAATGCGCAAGCGGGGATCGGCCCGGTCCCCCCTGAGTGTTCCGATCCTGC
TGCCGCAACCCTCGGTCTCATTCGAT
Found at i:22067612 original size:26 final size:26
Alignment explanation
Indices: 22067561--22067613 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22067551 CTTATCCGAT
* *
22067561 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22067587 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
22067613 C
1 C
22067614 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22068643 original size:170 final size:170
Alignment explanation
Indices: 22068311--22068833 Score: 692
Period size: 170 Copynumber: 3.1 Consensus size: 170
22068301 CATGAACTTT
* * * * * * * * * *
22068311 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAGCCAGCCGGAGAGGCATATTGCG
1 GTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCACTCAACCGGCCGGAGAGGCAGAATGAG
* * * * *
22068376 TAAGCTGGGGATC-AGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCAGTCCTACTGCCA
66 CAAGCCGAGGATCGA-CCCGATCCCCC-CTGCGTGCTGTCGATCCCGCTGCCGGTCCTACTACCA
* ** *
22068440 CAACCCTCGGTCTAGCTCAGGCTTAGA-ATGGAATGAACTCC
129 CAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAAATCC
*
22068481 GTATGCCTAAGCCAACCCATGAAATGAGCTTGCGGGCACTCAACCGGCCGGAGAGGCAGAATGAG
1 GTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCACTCAACCGGCCGGAGAGGCAGAATGAG
* * *
22068546 CAAGCCGAGGATCGACCCGATCCCCCCTGCGTTCTGTCGATCCCGCTACCGGTCCTGCTACCACA
66 CAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCCGCTGCCGGTCCTACTACCACA
* *
22068611 ACCCTTGGTTTGGCTGGGGCTTAGACATGGAATGAAATCC
131 ACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAAATCC
* ** * *
22068651 GTATGCCTAAGCCAACACATGAAATGAGCATGCGGGTGCTCAACCGGTCGGAGAGGTAGAATGCA
1 GTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCACTCAACCGGCCGGAGAGGCAGAATG-A
* * * *
22068716 -CAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCCCGCTGTCGGTCCTACTACCAC
65 GCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCCGCTGCCGGTCCTACTACCAC
22068780 AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAAATCC
130 AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAAATCC
22068821 GTATGCCTAAGCC
1 GTATGCCTAAGCC
22068834 CTCCCCTGCG
Statistics
Matches: 311, Mismatches: 39, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
169 54 0.17
170 255 0.82
171 2 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.19
Consensus pattern (170 bp):
GTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCACTCAACCGGCCGGAGAGGCAGAATGAG
CAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCCGCTGCCGGTCCTACTACCACA
ACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAAATCC
Found at i:22069292 original size:159 final size:158
Alignment explanation
Indices: 22068922--22069337 Score: 433
Period size: 158 Copynumber: 2.6 Consensus size: 158
22068912 AACTCCGTAT
* * *
22068922 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* * * * *
22068987 CTGATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGATCCAGTCCCCCCTACGTGCTGTCGATCC
66 CCGACCGGAGAGGCAAAATGCACAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTGTAGATCC
* **
22069052 TACTGCTGCAACCCTCGGTCCGATCTGA
131 CACTGCCACAACCCTCGGTCCGATCTGA
* * * * * * * *
22069080 TCTTAGACAAGGAATGAACT-TTGTATGCCTAAGTCAAACCACGAAACAAGCGTGTGGGCGTTGA
1 GCTTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCA
* * ** *
22069144 GCCGACCGGAGAGGCATAATGCACAAGCCGAGGATCGGCCCAGTCCTCTTCTGCGTGCTAGCTAG
65 GCCGACCGGAGAGGCAAAATGCACAAGCCGAGGATCGACCCAGTCC-CCCCTACGTGCT-G-TAG
*
22069209 -TCCCACTGCCACAACCCTCGGTCCGA-CTGG
127 ATCCCACTGCCACAACCCTCGGTCCGATCTGA
* * * * * * *
22069239 GGTTAGACATGGAATGAACTCCTTATGCCTAAGCCGACCCACGAAATGGGCGTGCGGGCACGCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* ** * * *
22069304 TCGGTCAGAGAGGCAGAATGCACAAGCCGGGGAT
66 CCGACCGGAGAGGCAAAATGCACAAGCCGAGGAT
22069338 TCGCCTGGTC
Statistics
Matches: 207, Mismatches: 46, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
158 92 0.44
159 88 0.43
160 25 0.12
161 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
CCGACCGGAGAGGCAAAATGCACAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTGTAGATCC
CACTGCCACAACCCTCGGTCCGATCTGA
Found at i:22069428 original size:26 final size:26
Alignment explanation
Indices: 22069399--22069450 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
22069389 CGATCTGATA
22069399 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* *
22069425 TTAGACTGGGGATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
22069451 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:22076304 original size:158 final size:158
Alignment explanation
Indices: 22076013--22076504 Score: 476
Period size: 158 Copynumber: 3.1 Consensus size: 158
22076003 GCTTACACAT
* * ** *
22076013 GGAATGAACACCATATGCTTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGTCGGAG
1 GGAATGAACTCCGTATGCAAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAG
* * * *
22076078 AGG-TATAATGCGCAAGTTAGGGATCGGCCCGATCCCCCCTGCGTGCTG-TCGATCCTGCTACCA
66 AGGCT-TAATGCGTAAGTTAGGGATCGGCCCGGTCCCCCCTGTGTGCTGCT-GATCCGGCTACCA
*
22076141 TAACCCTCGATCCGATCTGATCTTAGACTG
129 CAACCCTCGATCCGATCTGATCTTAGACTG
* * * * ** *
22076171 GGAATGAACTTCGTATGCAAAAGTCAACCCACGAAACGAGCGTGCGGG-GTTGAGCCGACCGAAG
1 GGAATGAACTCCGTATGCAAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAG
* * * **
22076235 AGGCTTAATGCGTAAGTTAGGGATTGGCCCGGTCCCCCTCTATGTGCTGCTGGTCTC-GCTGTCA
66 AGGCTTAATGCGTAAGTTAGGGATCGGCCCGGTCCCCC-CTGTGTGCTGCTGATC-CGGCTACCA
* * **
22076299 CAACCCTCAATCTGA-CTGGGGCTTAGACAT-
129 CAACCCTCGATCCGATCT-GATCTTAGAC-TG
* * ** * *
22076329 GGAATGAACTCCCTACGCCTAAGCCAACCCAC-AAAGCGGGCGTGCGGGTGCTCAGCCGGTCGGA
1 GGAATGAACTCCGTATGCAAAAGCCAACCCACGAAA-CGAGCGTGCGGGCGCTCAGCCGGTCGGA
** * * * * * *
22076393 GAGGCAGAATGCGTAAGTCAGGGATCAGCCTGGTCCCCCCTGTGTGTTGCCGATCCGGCTACCGC
65 GAGGCTTAATGCGTAAGTTAGGGATCGGCCCGGTCCCCCCTGTGTGCTGCTGATCCGGCTACCAC
* * *
22076458 AACCCTCGGTCCGGTCCGATCTTAGACTG
130 AACCCTCGATCCGATCTGATCTTAGACTG
*
22076487 AGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
22076505 TTAGACTGGG
Statistics
Matches: 263, Mismatches: 60, Indels: 22
0.76 0.17 0.06
Matches are distributed among these distances:
157 50 0.19
158 166 0.63
159 47 0.18
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCAAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAG
AGGCTTAATGCGTAAGTTAGGGATCGGCCCGGTCCCCCCTGTGTGCTGCTGATCCGGCTACCACA
ACCCTCGATCCGATCTGATCTTAGACTG
Found at i:22076507 original size:26 final size:26
Alignment explanation
Indices: 22076478--22076529 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
22076468 CCGGTCCGAT
22076478 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
22076504 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
22076530 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:22076707 original size:185 final size:183
Alignment explanation
Indices: 22076319--22076874 Score: 575
Period size: 185 Copynumber: 3.0 Consensus size: 183
22076309 TCTGACTGGG
* * * * **
22076319 GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCAC-AAAGCGGGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TGAGCGTGCGGGCACTCA
* * * * * * * *
22076383 GCCGGTCGGAGAGGCAGAATGCGTAAGTCAGGGATCAGCCT-GGT-CCCCCCTGTGTGTTGCCGA
65 G-CAGTCGGAGAGGCAGAATGCGCAAGCCAGGGA-CCGACTCGGTCCCCCCCTGCGTGCTGTCGA
* * *
22076446 TCCGGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTAT
128 TCCTGCT-GCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCATAT
* * * *
22076503 GCTTAGAC-TGGGGATGAACTCCGTATGTCTAAGTCAACCCACGAAATGAGCGTGCGGGCCCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCA
* * *
22076567 GTCAGTCGGAGAGGTAGAATGTGCAAGCCAGGGACCGACTCGGTCCCCCCCGGCGTGCTGTCGAT
65 G-CAGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACTCGGTCCCCCCCTGCGTGCTGTCGAT
* *** *
22076632 CCTGCTGCAGCAACCCTTGGTTTTG-CCTGATCTTAGATTGAGAATGAACTCCATAT
129 CCTGCTGC-GCAACCCTCGGTCCGGTCC-GATCTTAGACTGAGAATGAACTCCATAT
* * * *
22076688 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAATCCACGAAATGAGTGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * * ** * * *
22076753 CAGGCCGGAGAGGCAGAATGCGCAAGCCAGGGACCGGCCCTATCCCCCCATGCATGCTATCGATC
66 CA-GTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACTCGGTCCCCCCCTGCGTGCTGTCGATC
* * *
22076818 CTGCTGTCGCAACCCTCGGTCCTGTTCGATCTTAGACTG-GTAATGAACTCCGTAT
130 CTGCTG-CGCAACCCTCGGTCCGGTCCGATCTTAGACTGAG-AATGAACTCCATAT
22076873 GC
1 GC
22076875 CTAAGTTAAA
Statistics
Matches: 307, Mismatches: 54, Indels: 21
0.80 0.14 0.05
Matches are distributed among these distances:
183 5 0.02
184 86 0.28
185 213 0.69
186 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
CAGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACTCGGTCCCCCCCTGCGTGCTGTCGATCC
TGCTGCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCATAT
Found at i:22076990 original size:159 final size:156
Alignment explanation
Indices: 22076689--22077191 Score: 409
Period size: 159 Copynumber: 3.2 Consensus size: 156
22076679 ACTCCATATG
** * *
22076689 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAATCCACGAAATGAGTGTACGGGCACTCAG-
1 CTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAAACCACGAAATGAGTGTGCGGGCACTCAGC
* * * * * * * * * * *
22076753 CAGGCCGGAGAGGCAGAATGCGCAAGCC-AGGGACCGGCCCTATCCCCCCATGCATGCTATCGAT
65 CA-ACAGAAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCGAT-CCCTCTTACGTGCTGTCGAT
** * * *
22076817 CCTGCTGTCGCAACCCTCGGTCCTGTTCGAT
127 CCCACTGCCACAACCCTCGAT-CTGTTCGAT
* ** * * *
22076848 CTTAGACTGGTAATGAACTCCGTATGCCTAAGTTAAACCATGAAATGAGTGTGCGGGCATTGAGC
1 CTTAGACTGG-AATGAACTCCATATGCCTAAGCCAAACCACGAAATGAGTGTGCGGGCACTCAGC
* * * * *
22076913 CAACCGAAGAGGCATAATGTGCAAGCCGAGGATCGATCTGAT-CCTCCTCTACGTGCTGTCGATC
65 CAACAGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCT-CT-TACGTGCTGTCGATC
** * * * **
22076977 CCGTTGCCACAACCCTTGATCTAGCTAGGG
128 CCACTGCCACAACCCTCGATCT-GTTCGAT
* * * **
22077007 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGGGCTCAGC
1 CTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAAACCACGAAATGAGTGTGCGGGCACTCAGC
* * * * * *
22077072 CGACAGGAGAGGCAGATTGCGCAAGCCGGGGATCGGCCCGATCCCTCTTACGTGCTGTCGATCCT
65 CAACAGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCTCTTACGTGCTGTCGATCCC
* * *
22077137 ACTGTCGCAACCCTCGATCTGATCCGAT
130 ACTGCCACAACCCTCGATCTG-TTCGAT
22077165 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACT-GGAATGAACTCCATATGC
22077192 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 64, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 4 0.01
158 62 0.23
159 195 0.72
160 9 0.03
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCATATGCCTAAGCCAAACCACGAAATGAGTGTGCGGGCACTCAGCC
AACAGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCTCTTACGTGCTGTCGATCCCA
CTGCCACAACCCTCGATCTGTTCGAT
Found at i:22077287 original size:687 final size:685
Alignment explanation
Indices: 22075988--22077287 Score: 1606
Period size: 687 Copynumber: 1.9 Consensus size: 685
22075978 CTTAGGCTGG
* *
22075988 GAATGAAATCCGTATGCTTACACATGGAATGAACACCATATGCTTAAGCCAACCCACGAAACGAG
1 GAATGAAATCCATATGCTTACACATGGAATGAACACCATATGCCTAAGCCAACCCACGAAACGAG
* * * * * * ** *
22076053 CGTGCGGGCGCTCAGCTGGTCGGAGAGGTATAATGCGCAAGTTAGGGATCGGCCCGATCCCCCCT
66 CGTACGGGCACTCAGCAGGCCGGAGAGGCAGAATGCGCAAGCCAGGGACCGGCCCGATCCCCCCT
* * * *
22076118 GCGTGCTGTCGATCCTGCTACCATAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTTC
131 GCATGCTATCGATCCTGCTACCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCC
* * * * *
22076183 GTATGCAAAAGTCAACCCACGAAACGAGCGTGCGGGGTTGAGCCGACCGAAGAGGCTTAATGCGT
196 GTATGCAAAAGTCAAACCACGAAACGAGCGTGCGGGATTGAGCCAACCGAAGAGGCATAATGCGC
** * * * * * * *
22076248 AAGTTAGGGATTGGCCCGGTCCCCCTCTATGTGCTGCTGGTCTCGCTGTCACAACCCTCAATCTG
261 AAGCGAGGGATCGACCCGATCCCCCTCTACGTGCTGCTGATCCCGCTGCCACAACCCTCAATCTG
* *
22076313 ACTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACAAAGCGGGCGTGCGGGT
326 ACTAGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACAAAGCGGGCGTGCGGGG
* * * * * ** *
22076378 GCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGTCAGGGATCAGCCTGGTCCCCCCTGTGTGTTGC
391 GCTCAGCCGGACGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTGC
* * * *
22076443 CGATCCGGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTA
456 CGATCCGACTACCGCAACCCTCGATCCGATCCGATCTTAGACTGAGAATGAACTCCATATGCTTA
* * ** *
22076508 GACTGGGGATGAACTCCGTATGTCTAAGTCAACCCACGAAATGAGCGTGCGGGCCCTCAGTCAGT
521 GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCCCTCAACCAGC
* *
22076573 CGGAGAGGTAGAATGTGCAAGCCAGGGACCGACTCGGTCCCCCCCGGCGTGCTGTCGATCCTGCT
586 CAGAGAGGTAGAATGCGCAAGCCAGGGACCGACTCGGTCCCCCCCGGCGTGCTGTCGATCCTGCT
22076638 GCAGCAACCCTTGGTTTTGCCTGATCTTAGATTGA
651 GCAGCAACCCTTGGTTTTGCCTGATCTTAGATTGA
* * * ** * *
22076673 GAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAATCCACGAAATGAG
1 GAATGAAATCCATATGCTTACACATGGAATGAACACCATATGCCTAAGCCAACCCACGAAACGAG
* *
22076738 TGTACGGGCACTCAGCAGGCCGGAGAGGCAGAATGCGCAAGCCAGGGACCGGCCCTATCCCCCCA
66 CGTACGGGCACTCAGCAGGCCGGAGAGGCAGAATGCGCAAGCCAGGGACCGGCCCGATCCCCCC-
** * * * *
22076803 TGCATGCTATCGATCCTGCTGTCGCAACCCTCGGTCCTGTTC-GATCTTAGACTGGTAATGAACT
130 TGCATGCTATCGATCCTGCTACCACAACCCTCGATCC-GATCTGATCTTAGACTGGGAATGAACT
** * * * *
22076867 CCGTATGCCTAAGTTAAACCATGAAATGAGTGTGCGGGCATTGAGCCAACCGAAGAGGCATAATG
194 CCGTATGCAAAAGTCAAACCACGAAACGAGCGTGCGGG-ATTGAGCCAACCGAAGAGGCATAATG
* * * * * **
22076932 TGCAAGCCGA-GGATCGATCTGATCCTCCTCTACGTGCTG-TCGATCCCGTTGCCACAACCCTTG
258 CGCAAG-CGAGGGATCGACCCGATCCCCCTCTACGTGCTGCT-GATCCCGCTGCCACAACCCTCA
* * *
22076995 ATCT-AGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-TGGGTG
321 ATCTGA-CTAGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCAC-AAAGCGGGCG
* * * * *
22077058 TGCGGGGGCTCAGCC-GACAGGAGAGGCAGATTGCGCAAGCCGGGGATCGGCCCGATCCCTCTTA
384 TGCGGGGGCTCAGCCGGAC-GGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTA
* * ** * *
22077122 CGTGCTGTCGATCCTACTGTCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCA
448 CGTGCTGCCGATCCGACTACCGCAACCCTCGATCCGATCCGATCTTAGACTGAGAATGAACTCCA
* * *
22077187 TATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCT
513 TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCCCT
*
22077252 CAACC-GACCAGAGAGGTAGGATGCGCAAGCCAGGGA
578 CAACCAG-CCAGAGAGGTAGAATGCGCAAGCCAGGGA
22077288 TCGAACATGT
Statistics
Matches: 510, Mismatches: 96, Indels: 16
0.82 0.15 0.03
Matches are distributed among these distances:
685 109 0.21
686 86 0.17
687 311 0.61
688 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (685 bp):
GAATGAAATCCATATGCTTACACATGGAATGAACACCATATGCCTAAGCCAACCCACGAAACGAG
CGTACGGGCACTCAGCAGGCCGGAGAGGCAGAATGCGCAAGCCAGGGACCGGCCCGATCCCCCCT
GCATGCTATCGATCCTGCTACCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCC
GTATGCAAAAGTCAAACCACGAAACGAGCGTGCGGGATTGAGCCAACCGAAGAGGCATAATGCGC
AAGCGAGGGATCGACCCGATCCCCCTCTACGTGCTGCTGATCCCGCTGCCACAACCCTCAATCTG
ACTAGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACAAAGCGGGCGTGCGGGG
GCTCAGCCGGACGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTGC
CGATCCGACTACCGCAACCCTCGATCCGATCCGATCTTAGACTGAGAATGAACTCCATATGCTTA
GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCCCTCAACCAGC
CAGAGAGGTAGAATGCGCAAGCCAGGGACCGACTCGGTCCCCCCCGGCGTGCTGTCGATCCTGCT
GCAGCAACCCTTGGTTTTGCCTGATCTTAGATTGA
Found at i:22078986 original size:27 final size:27
Alignment explanation
Indices: 22078926--22078987 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
22078916 TCGGTCCCAG
*
22078926 TCCGTAT-CTTAGACTGTGGAATGAAC
1 TCCGTATGCTTAGACTGGGGAATGAAC
** *
22078952 TCTATATGCTTA-ACTGGGGTAGTGAAC
1 TCCGTATGCTTAGACTGGGG-AATGAAC
22078979 TCCGTATGC
1 TCCGTATGC
22078988 CTAAGTCAAC
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
26 11 0.39
27 17 0.61
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.32
Consensus pattern (27 bp):
TCCGTATGCTTAGACTGGGGAATGAAC
Found at i:22079844 original size:26 final size:26
Alignment explanation
Indices: 22079815--22079867 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22079805 CCAATCTGAT
22079815 CTTAGACTGGCAATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCTGTATG
**
22079841 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCTGTATG
22079867 C
1 C
22079868 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCTGTATG
Found at i:22080997 original size:13 final size:13
Alignment explanation
Indices: 22080975--22081010 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
22080965 GCTCAGTCGA
*
22080975 CCGGAGAGGCCGG
1 CCGGAGAGGCCAG
*
22080988 CCGGATAGGCCAG
1 CCGGAGAGGCCAG
22081001 CCGGAGAGGC
1 CCGGAGAGGC
22081011 AGAATGCGCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.19, C:0.31, G:0.47, T:0.03
Consensus pattern (13 bp):
CCGGAGAGGCCAG
Found at i:22081141 original size:26 final size:25
Alignment explanation
Indices: 22081102--22081153 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
22081092 TCTGATCTGT
22081102 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
22081127 CTTAGACATGGAATGGACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
22081153 C
1 C
22081154 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:22081936 original size:12 final size:12
Alignment explanation
Indices: 22081919--22081945 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
22081909 CCGATACTGT
22081919 TGCTGGTTCTGC
1 TGCTGGTTCTGC
22081931 TGCTGGTTCTGC
1 TGCTGGTTCTGC
22081943 TGC
1 TGC
22081946 CCAACCCTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.26, G:0.33, T:0.41
Consensus pattern (12 bp):
TGCTGGTTCTGC
Found at i:22082498 original size:26 final size:26
Alignment explanation
Indices: 22082469--22082521 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
22082459 CCAGTCTGAT
22082469 CTTAGACT-GGGAATGAAC-TCTGTATG
1 CTTAGACTAGGG-ATGAACTTC-GTATG
22082495 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGGATGAACTTCGTATG
22082521 C
1 C
22082522 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTTCGTATG
Found at i:22082821 original size:868 final size:870
Alignment explanation
Indices: 22081101--22083600 Score: 2819
Period size: 868 Copynumber: 2.9 Consensus size: 870
22081091 GTCTGATCTG
* * *
22081101 TCTTAGACT-GGAATGAACTCCGTATGCTTAGACATGGAATGGACTCCGTATGCCTAAGCCAACA
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
* * * * * *
22081165 CATGAAACGAGCATGC-GGCGCTCAATTGGTCGGAGAGGCAGAATGCAAAAGCCGGGGACCGACT
66 CATGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCACAAGCTGGGGACCGAC-
* * * * ** * *
22081229 CGATCCCCCCTACATGCTGTCAATCTTGCTGCCGTAACCCTCATTTCGATCTGATCTTAGACTGG
130 CGATCCCCCCTACATGCTGTCGATCTTACTGCCGCAACCTTCGGTCCGGTCTGATCTTAGACTGG
*
22081294 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCAGGCGCTGAGCCGATCGGAGA
195 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTTCA-GCGCTGAGCCGATCGGAGA
*
22081359 GGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGGTCCCGCTACCACA
259 GGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTATC-GTCCCGCTGCCACA
**
22081424 ACTC-TCGATCCGGCTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
323 ACTCTTCGATCCGATTGGG-CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * * *
22081488 C-AGGCATGCGGGCACTCAG-CTAGTCGGAGAGGTAGAATGCCCAAGTCGAGGATCGACCTGGTC
387 CGA-GCGTGCGGGCACTCAGCCGA-TCAGAGAGGTAGAATGCCCAAGCCGGGGATCGACCTGGTC
* * *
22081551 ACCCCAACGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATG
450 ACCCCAGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATG
* * * *
22081616 AACTCTGTATGCTTAGACT-GAGGATGACCTCCATATACCTAAGTCAACCCATGAAAAGTGCATG
515 AACTCTGTATGCTTAGACTAG-GGATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGCATG
* * ** * * *
22081680 CGGGCGCTCAGCCGGCCGGAGAGGCATAATGCGTAATTCGGGGATCAGCCCGAT-CCCC-CT---
579 CGGGTGCTCAGTCAACCGGAGAGGCATAATGCGTAAGTCAGGGATCAGCTCGATCCCCCTCTACG
* * *
22081740 -CT-TC--T--TGCTGTCGATCCTACTACCATAACCCTCGGTCTGACTGGGGCTTAGACATGGAA
644 GCTGTCGATCCTGCTGCCGGTCCTGCTACCATAACCCTCGGTCTGACTGGGGCTTAGACATGGAA
* * * * * * * * *
22081799 TGAACTCCATATTCCTAAGCCAACCCACGAAATGAGTGTGCAGGCGCTCAACCTGTCGGAGAGGC
709 TGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACCCAACCAGTCAGAGAGGC
* * * *
22081864 AGAATGCACAAGCTAGGGATCGACCTGGTCCCCCCTATTGTACTACCGATACTGTTGCTGGTTCT
774 AGAATGCACAAGCCAAGGATCGACCTGATCCCCCCTATTG-ACTACCGATACTGCTGCTGGTTC-
* **
22081929 GCTGCTGGTTCTGCTGCCCAACCCTCGATCTTGTCTAA
837 GCTGCTAG-T-T-CTG-CCAACCCTCGATCCGGTCTAA
*
22081967 TCTTAGACTGGGAATGAACT-CGTATGCTTAGAAATGGAATGAACTCTGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
* * *
22082031 CACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCACAAGCTGGGGACCGGTC
66 CATGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCACAAGCTGGGGACC-GAC
* * * * **
22082096 CAATCCCCCTTACGTGCTGTCGATCCTACTGCTACAACCTTCGGTCCGGT-TCGATCTTAGA-TA
130 CGATCCCCCCTACATGCTGTCGATCTTACTGCCGCAACCTTCGGTCCGGTCT-GATCTTAGACT-
* *
22082159 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTTCAGCACTGAGCCG-CCGGGA
193 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTTCAGCGCTGAGCCGATC-GGA
* * ** **
22082223 GAGGCATAATGCGTAAGCCAGGGATAGGTTCGATCCCCCTCTGCGTTGCTGCCAGTCCCGCTGCC
257 GAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCG-TGCTATC-GTCCCGCTGCC
* * *
22082288 ATAACTCTTTGATCCAATTGGGCTTAGACATGGAATGAACTCCCTATTGCCTAAGCCAACCCACG
320 ACAACTCTTCGATCCGATTGGGCTTAGACATGGAATGAACTCCCTA-TGCCTAAGCCAACCCACG
* * * *
22082353 AAACGAGCGTGTGGGCACTCAGCCGACCAGAAAGGTAGAATGCCCAAGCCGGGGATCGACCCGGT
384 AAACGAGCGTGCGGGCACTCAGCCGATCAGAGAGGTAGAATGCCCAAGCCGGGGATCGACCTGGT
* * ** *
22082418 CACCCCTGTGTGCTACCGATCCTGCTGTCGCAACCCTTC-GTCCAGTCTGATCTTAGACTGGGAA
449 CACCCCAGCGTGCTGTCGATCCTGCTGTCGCAACCC-TCGGTCCAGTCCGATCTTAGACTGGGAA
* * * * *
22082482 TGAACTCTGTATGCTTAGACTAGGGATGAACTTCGTATGCCTAAGTCAAGCCACGAAACGAGCGT
513 TGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGCAT
* * * * *
22082547 GTGGGTGCTCAGTCAACCGGAGAGGCATAATACGCAAGCCAGGGATTAGCTCGATCCCCCTCTAC
578 GCGGGTGCTCAGTCAACCGGAGAGGCATAATGCGTAAGTCAGGGATCAGCTCGATCCCCCTCTAC
* * * *
22082612 GCGCTGTCGATCCTGCTGCCGGTCCTGCTGCCATAACCCTTGATCTAACTGGGGCTTAGACATGG
643 G-GCTGTCGATCCTGCTGCCGGTCCTGCTACCATAACCCTCGGTCTGACTGGGGCTTAGACATGG
* **
22082677 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACCCAGTCAGTCAGAGAG
707 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACCCAACCAGTCAGAGAG
* ** * *
22082742 GTAGAATGCGTAAGCCAAGGATCG-GCTCGATCCCCCCTGCA-TG-CTGCCGAT-CTTGCTGCTG
772 GCAGAATGCACAAGCCAAGGATCGACCT-GATCCCCCCT--ATTGACTACCGATAC-TGCTGCTG
* *
22082803 G-TC-CTGC-AG-T-TG-CAACCCTCGTTCCGGTCTGA
833 GTTCGCTGCTAGTTCTGCCAACCCTCGATCCGGTCTAA
*
22082835 TCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
* * * * ** * ** *
22082900 CATAAAACAAGCGTACGTGCGCTCAG-CAGGCTAGAGAGGTAGAATGCACAAGCTGGGGATTAGC
66 CATGAAACGAGCGTGCGGGCGCTCAGTC-GGCCGGAGAGGCAGAATGCACAAGCTGGGGA-CCGA
* * * * * *
22082964 CCGGTCCCCCCTGCATGCTGACGATCTTACTGCCGCAACCCTT-GGTCTGGTCTAATTTTAGACT
129 CCGATCCCCCCTACATGCTGTCGATCTTACTGCCGCAA-CCTTCGGTCCGGTCTGATCTTAGACT
* **
22083028 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCGCTGAGCCGATCGGA
193 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGT-TCAGCGCTGAGCCGATCGGA
* * *
22083093 GAGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTGCGTACTATCGATCCCGCTGCCA
257 GAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTATCG-TCCCGCTGCCA
* * * *
22083158 CAAC-CTTCGATTCGGCTGGGGCTTAGACATGGAATGAACT-CCTAATGCCTAAGCCAACCCATG
321 CAACTCTTCGA-TCCGATTGGGCTTAGACATGGAATGAACTCCCT-ATGCCTAAGCCAACCCACG
* * * * * * **
22083221 AAATGGGCGTACGGGCGCTCAGCCGGTCAGAGAGGCAGAATGCGTAAGCCGGGGATC-AGCCTGG
384 AAACGAGCGTGCGGGCACTCAGCCGATCAGAGAGGTAGAATGCCCAAGCCGGGGATCGA-CCTGG
* **
22083285 TC-CCCCCGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGT-TTGATCCGATCTTAGACTGGGA
448 TCACCCCAGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGA
** *
22083348 ATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCA
512 ATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGCA
* * *
22083413 TACGGGTGCTCAGTCAGTCGAAGAGGAGCCGGAGAGGCATAATGCGTAAGTTAGGGATCAGCTTG
577 TGCGGGTG--C--TCAGTC----A--A-CCGGAGAGGCATAATGCGTAAGTCAGGGATCAGCTCG
* * * * **
22083478 GTCCCCCTTTACGTGCTGTCGATCCCGCTGCTGGTCCTGCTACCGCAACCCTCGGTCTGACTGGG
631 ATCCCCCTCTACG-GCTGTCGATCCTGCTGCCGGTCCTGCTACCATAACCCTCGGTCTGACTGGG
* *
22083543 GCTTAGACATGGAATGAACTCCGTATGCCTATGCCAACCCATGAAACGAGCGTGCGGG
695 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG
22083601 TGCTCAGCCG
Statistics
Matches: 1371, Mismatches: 209, Indels: 96
0.82 0.12 0.06
Matches are distributed among these distances:
865 1 0.00
866 122 0.09
867 298 0.22
868 345 0.25
869 233 0.17
870 63 0.05
871 7 0.01
872 1 0.00
875 4 0.00
876 6 0.00
877 1 0.00
878 144 0.11
879 17 0.01
880 126 0.09
881 2 0.00
882 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (870 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
CATGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCACAAGCTGGGGACCGACC
GATCCCCCCTACATGCTGTCGATCTTACTGCCGCAACCTTCGGTCCGGTCTGATCTTAGACTGGG
AATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTTCAGCGCTGAGCCGATCGGAGAGG
CATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGTCCCGCTGCCACAACT
CTTCGATCCGATTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG
CGTGCGGGCACTCAGCCGATCAGAGAGGTAGAATGCCCAAGCCGGGGATCGACCTGGTCACCCCA
GCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCT
GTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGCATGCGGGTGC
TCAGTCAACCGGAGAGGCATAATGCGTAAGTCAGGGATCAGCTCGATCCCCCTCTACGGCTGTCG
ATCCTGCTGCCGGTCCTGCTACCATAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTC
CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACCCAACCAGTCAGAGAGGCAGAATGC
ACAAGCCAAGGATCGACCTGATCCCCCCTATTGACTACCGATACTGCTGCTGGTTCGCTGCTAGT
TCTGCCAACCCTCGATCCGGTCTAA
Found at i:22083289 original size:159 final size:158
Alignment explanation
Indices: 22082861--22083321 Score: 454
Period size: 159 Copynumber: 2.9 Consensus size: 158
22082851 AACTCCGTAT
* * *
22082861 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACAAGCGTACGTGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * *
22082926 CAGG-CTAGAGAGGTAGAATGCACAAGCTGGGGATTAGCCCGGTCCCCCCTGCATGCTGA-CGAT
66 CCGGTC-AGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCT-ATCGAT
* * *
22082989 CTTACTGCCGCAACCCTTGGTCTGGTCTAA
129 CCTGCTGCCACAACCCTTGGTCTGGTCTAA
** * * * *
22083019 TTTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
* * * * * *
22083083 GCCGATCGGAGAGGCATAATGCACAAGCCAGGGATC-GACCCGATCCCCCTCTGCGTACTATCGA
65 GCCGGTCAGAGAGGCAGAATGCACAAGCCGGGGATCAG-CCCGGTCCCCC-CTGCGTGCTATCGA
* * **
22083147 TCCCGCTGCCACAA-CCTTCGAT-TCGG-CTGGG
128 TCCTGCTGCCACAACCCTT-GGTCT-GGTCT-AA
* * *
22083178 GCTTAGACATGGAATGAACTCCT-AATGCCTAAGCCAACCCATGAAATGGGCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACT-CTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
** * *
22083242 GCCGGTCAGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCTGGTCCCCCC-GCGTGCTGTCGATC
65 GCCGGTCAGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATC
* *
22083306 CTGCTGTCGCAACCCT
130 CTGCTGCCACAACCCT
22083322 CGGTTTGATC
Statistics
Matches: 242, Mismatches: 49, Indels: 24
0.77 0.16 0.08
Matches are distributed among these distances:
157 23 0.10
158 101 0.42
159 114 0.47
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
CCGGTCAGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCC
TGCTGCCACAACCCTTGGTCTGGTCTAA
Found at i:22083377 original size:26 final size:26
Alignment explanation
Indices: 22083336--22083388 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22083326 TTGATCCGAT
22083336 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22083362 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
22083388 C
1 C
22083389 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22085838 original size:158 final size:157
Alignment explanation
Indices: 22085534--22086035 Score: 514
Period size: 158 Copynumber: 3.2 Consensus size: 157
22085524 ACTCCGTATG
* *
22085534 CTTAGACATGGAATGAACACCATATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
22085599 TGGCCGGAGAGG-TAAAATGCGTAAGTTGGGGATCGACCCGATCCCCCCCTGCTTGCTGTTGATC
66 -GGCCGGAGAGGCT-AAATGCGCAAGTCGGGGATCGACCCGGT-CCCCCCTGCGTGCTGATGATC
* * *
22085663 CTGTTACTGTAACCCTCGGTCCGATCTGAT
128 CTGCTACCGCAACCCTCGGTCCGATCTGAT
* * * * *
22085693 CTTAGAC-TGGGAATGAACTTCGTATGCAAAAGTCAACCCACGAAACGAGCGTGCGGG-GTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
22085756 TCGGCCGAAGAGGCTTAATGCGCAAGTCAGGGATTGGCCCGGTCCCCCTCTGCGTGCTGCTGGTC
65 -CGGCCGGAGAGGCTAAATGCGCAAGTCGGGGATCGACCCGGTCCCCC-CTGCGTGCTGATGATC
* * **
22085821 CTGCTACCACAACCCTCGATCCGAT-TGGGG
128 CTGCTACCGCAACCCTCGGTCCGATCT-GAT
* * * * *
22085851 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAGCGGGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-
* * *
22085916 CGGCCGGAGAGGC-AGAATGCGCAAGTCGGGGATCAATCCGGTCCCCCCTGTGTGCT-ATCGATC
65 CGGCCGGAGAGGCTA-AATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGAT-GATC
* * *
22085979 CGGCTACCGCAACCCTCAGTCCGATCGGAT
128 CTGCTACCGCAACCCTCGGTCCGATCTGAT
*
22086009 CTTAGAC-TGGGAATAAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
22086036 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 54, Indels: 23
0.78 0.15 0.06
Matches are distributed among these distances:
157 8 0.03
158 174 0.63
159 96 0.35
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
GGCCGGAGAGGCTAAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGATGATCCTG
CTACCGCAACCCTCGGTCCGATCTGAT
Found at i:22086038 original size:26 final size:26
Alignment explanation
Indices: 22086009--22086061 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22085999 CCGATCGGAT
22086009 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
22086035 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
22086061 C
1 C
22086062 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:22086177 original size:184 final size:181
Alignment explanation
Indices: 22085850--22086403 Score: 614
Period size: 184 Copynumber: 3.0 Consensus size: 181
22085840 TCCGATTGGG
* * * *
22085850 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAGCGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * *
22085915 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAATCCGGTCCCCCCTGTGTGCTATCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGTCAGGGA-CAGGCCGATCCCCCCTGCGTGCTATCGATCC
* * *
22085980 GGCTACCGCAACCCTCAGTCCGATCGGATCTTAGACTGGGAATAAACTCCGTAT
130 TGCT-GCGCAACCCTCAGTCCGATC-GATCTTAGACTGGGAATGAACTCCGTAT
* * * *
22086034 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCCCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
22086098 GTCGGTCGAAGAGGTAGAATGCGCAAG-CTAGGGACAGGCTCGATCCCCCCCGACGTACT-GCGA
65 GCCGGTCGGAGAGGCAGAATGCGCAAGTC-AGGGACAGGC-CGATCCCCCCTG-CGTGCTATCGA
** * * *
22086161 TCCTGCTGCAGCAACCCTTGGTCCGGTCTGATCTTAGACTGAGAATGAACTCCATAT
127 TCCTGCTGC-GCAACCCTCAGTCCGATC-GATCTTAGACTGGGAATGAACTCCGTAT
*
22086218 GCTTAGACATGGAATGAACTCCGTATGCC-AATGCCAACCCACGAAATGAGCGTGCGGGCGCT-A
1 GCTTAGACATGGAATGAACTCCGTATGCCTAA-GCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
22086281 GCCGATCGGAGAGGCAGAATGAGCAAGTCAGGGACCGGCCCAATCCCCTCATGCGTGCTATCGAT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGTCAGGGACAGG-CCGATCCCC-CCTGCGTGCTATCGAT
* * *
22086346 CCTGCTGTCGCAACCATCAGTCCGGTTCGATCTTAGACTGGTAATGAACTCCGTAT
128 CCTGCTG-CGCAACCCTCAGTCC-GATCGATCTTAGACTGGGAATGAACTCCGTAT
22086402 GC
1 GC
22086404 CTAAGTTAAA
Statistics
Matches: 305, Mismatches: 52, Indels: 26
0.80 0.14 0.07
Matches are distributed among these distances:
183 51 0.17
184 245 0.80
185 9 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (181 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGTCAGGGACAGGCCGATCCCCCCTGCGTGCTATCGATCCT
GCTGCGCAACCCTCAGTCCGATCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:22086232 original size:26 final size:26
Alignment explanation
Indices: 22086193--22086245 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22086183 CCGGTCTGAT
22086193 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
22086219 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCATATG
22086245 C
1 C
22086246 CAATGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:22086723 original size:26 final size:26
Alignment explanation
Indices: 22086694--22086746 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22086684 CCGATCTGAT
22086694 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
22086720 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22086746 C
1 C
22086747 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22087762 original size:25 final size:24
Alignment explanation
Indices: 22087729--22087779 Score: 75
Period size: 25 Copynumber: 2.1 Consensus size: 24
22087719 CGGTCTGGTT
22087729 CGATCTTAGACTAGGAATGAACTC
1 CGATCTTAGACTAGGAATGAACTC
* *
22087753 CGATGCTTAGACTGGGCATGAACTC
1 CGAT-CTTAGACTAGGAATGAACTC
22087778 CG
1 CG
22087780 TATACCTAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 4 0.17
25 20 0.83
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (24 bp):
CGATCTTAGACTAGGAATGAACTC
Found at i:22087958 original size:26 final size:26
Alignment explanation
Indices: 22087929--22087981 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22087919 TCGGTCTGAT
*
22087929 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
22087955 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
22087981 C
1 C
22087982 CTCAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22090607 original size:26 final size:26
Alignment explanation
Indices: 22090578--22090630 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22090568 CCAGTCTGAT
22090578 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
*
22090604 CTTAGACATGGAATGGACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
22090630 C
1 C
22090631 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:22091493 original size:26 final size:26
Alignment explanation
Indices: 22091455--22091507 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22091445 GGCTCAAACT
22091455 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
22091481 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
22091507 C
1 C
22091508 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:22092023 original size:26 final size:26
Alignment explanation
Indices: 22091994--22092046 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22091984 CCGGTCTGAT
*
22091994 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACACCGTATG
*
22092020 CTTAGACATGGAATGAACACTGTATG
1 CTTAGACATGGAATGAACACCGTATG
22092046 C
1 C
22092047 CTAAGCCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACACCGTATG
Found at i:22092321 original size:159 final size:159
Alignment explanation
Indices: 22092020--22092517 Score: 382
Period size: 159 Copynumber: 3.1 Consensus size: 159
22092010 ACTCCGTATG
* ** * * * * **
22092020 CTTAGACAT-GGAATGAACACTGTATGCCTAAGCCAATCCACGAAAGGAGCATG-CGGGCGCTCT
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGACGGGCGCTGA
** * * * * * * *
22092083 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGA-CCAGCCCAGTCTCTCCTCGCATGCTGTCGA
65 ATCGATCGAAGAGGCAGAATGCACAAGCCTGGGATCGA-CCCAGTCCCCCCT-GCATGCTGTCGA
* ** * * *
22092147 TCCTACTGTCGCAACCCTTGGTCTGATCCGAT
128 TCCCACTACCACAACCCTCGATCTGATCCGAT
* * * ** *
22092179 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGT-TCGGGCGCTG-A
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGACGGGCGCTGAA
* * * *
22092242 GCTGATCGAAGAGGCATAATGCACAAGCC-GAGGATCGACCCAGTCCCCCTCTGCATGCTGTTGG
66 TC-GATCGAAGAGGCAGAATGCACAAGCCTG-GGATCGACCCAGTCCCCC-CTGCATGCTGTCGA
* * * * **
22092306 TCCCATTACCACAACCCTCGATCCG-GCTGGGG
128 TCCCACTACCACAACCCTCGATCTGATC-CGAT
* *
22092338 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGACGGGCGCTTA
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGACGGGCGCTGA
* * *** * * *
22092402 ATCGGTCGGAGAGGCAGAATGTGTAAGCCTGGGATCTACCCGGTCCCCCCTGTATGCTGTCGATC
65 ATCGATCGAAGAGGCAGAATGCACAAGCCTGGGATCGACCCAGTCCCCCCTGCATGCTGTCGATC
* *
22092467 CTACTACCGCAACCCTCGATCTGATCCGAT
130 CCACTACCACAACCCTCGATCTGATCCGAT
* *
22092497 CTTAGATTGGGAATGAGCTCC
1 CTTAGACTGGGAATGAACTCC
22092518 GCATGCTTAG
Statistics
Matches: 264, Mismatches: 62, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
158 5 0.02
159 206 0.78
160 50 0.19
161 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGACGGGCGCTGAA
TCGATCGAAGAGGCAGAATGCACAAGCCTGGGATCGACCCAGTCCCCCCTGCATGCTGTCGATCC
CACTACCACAACCCTCGATCTGATCCGAT
Found at i:22093782 original size:26 final size:26
Alignment explanation
Indices: 22093746--22093798 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22093736 CCAGTTCGAT
*
22093746 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
* *
22093772 CTTAGACTGGGGATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
22093798 C
1 C
22093799 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:22094508 original size:26 final size:26
Alignment explanation
Indices: 22094471--22094522 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22094461 GGTCAAAATA
*
22094471 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGATTGGGAATGAACTCCATATGC
22094497 TTAGACTT-GGAATGAACTCCATATGC
1 TTAGA-TTGGGAATGAACTCCATATGC
22094523 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
TTAGATTGGGAATGAACTCCATATGC
Found at i:22094998 original size:158 final size:158
Alignment explanation
Indices: 22094496--22095400 Score: 547
Period size: 158 Copynumber: 5.6 Consensus size: 158
22094486 ACTCCGTATG
* * * * * * *
22094496 CTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAATGAGCGTGCAGGCGCTCAGC
** * *
22094561 CGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCC-AGTCCCCCCTACATGCTATCGATCT
66 CGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGA-TCCCCCCTACATGCTGTCGATCC
* * ** * *
22094625 TGTTGCCGTAACCCTCAATCTGCTCTGAT
130 TGCTGCCGCAACCCTCGGTCTGGTCCGAT
* * * *
22094654 CTTAGACTGGCAATGAACTCCGTATGCATAAG-TCAACCCATGAAATGAGCGTGCAGGCACTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCT-AACCCATGAAATGAGCGTGCAGGCGCTCAG
* ** * * * *
22094718 CCAACCTAAGAGGCATAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTTCGTGCTGTTGATC
65 CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCC-CTACATGCTGTCGATC
* * * * **
22094783 CCGCTGCCACAACCCTCGGTCT-GACTGGGG
129 CTGCTGCCGCAACCCTCGGTCTGGTC-CGAT
* * * **
22094813 CTTAGACTTGGAATGAACTCCTTATGCCTAAGCTAACCCATGAAATGGGCGTGTTGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAATGAGCGTGCAGGCGCTCAGC
* * * *
22094878 CGACCGGAGAGCCAGAATGCGCAAG-TCGGGGATCGGCCCGATCCCCCCTGCATGCTGCCGATCC
66 CGACCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGACCCGATCCCCCCTACATGCTGTCGATCC
** *
22094942 TGCTATCGCAACCCTCGGTCTGGTCCAAT
130 TGCTGCCGCAACCCTCGGTCTGGTCCGAT
* * * *
22094971 CTTAGACTGGGAATGAACTCCGTATGCCTAAG-TCAACTCGTGAAATGAGTGTG-TGAGCGCTCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCT-AACCCATGAAATGAGCGTGCAG-GCGCTC-
* * ***
22095034 ATCGGCCAGAGAGGCCGATCGGAGAGGCATAATGCGTAAGCCACGGATC-AGCCC-AGTCCCCCT
63 A---GCC---GA---C---CGGAGAGGCAGAATGCGCAAGCTGGGGATCGA-CCCGA-T-CCCC-
* * * * * * * **
22095097 CTATGTGCTACCGATACCGCTGCCGATCCTACTGCCACAAGCTTCAGTCTGG-CTGGGG
112 C------CTA-C-AT---GCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTC-CGAT
** * * * * * *
22095155 CTTAGACAT-GGAATGAACTCTATATGCCTAAGCCAACCAACGAAATGAACGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAATGAGCGTGCAGGCGCTCAG
** * * * * * * * *
22095219 CCGGTCGGAGAGGCAGAAT-CGTAAACCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTACATGCTGTCGATCC
* * *
22095283 TGTTGCCACAACCCTCGGTCCGGTCCGAT
130 TGCTGCCGCAACCCTCGGTCTGGTCCGAT
* * * * *
22095312 CTTAGACTGGGAAAGAACTCCATATGCCTAAG-TCAACCCATGAAATGAACGTGTAGGCGCTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCT-AACCCATGAAATGAGCGTGCAGGCGCTCAG
* * *
22095376 CCGGCTGGAGAGGCATAATGCGCAA
65 CCGACCGGAGAGGCAGAATGCGCAA
22095401 ATCGAGTATC
Statistics
Matches: 568, Mismatches: 131, Indels: 96
0.71 0.16 0.12
Matches are distributed among these distances:
156 1 0.00
157 99 0.17
158 180 0.32
159 125 0.22
160 2 0.00
161 1 0.00
162 5 0.01
165 2 0.00
168 2 0.00
169 4 0.01
170 16 0.03
171 40 0.07
172 4 0.01
173 1 0.00
177 1 0.00
179 2 0.00
180 4 0.01
181 2 0.00
183 2 0.00
184 73 0.13
185 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAATGAGCGTGCAGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTACATGCTGTCGATCCT
GCTGCCGCAACCCTCGGTCTGGTCCGAT
Found at i:22095508 original size:159 final size:156
Alignment explanation
Indices: 22095153--22095511 Score: 411
Period size: 157 Copynumber: 2.3 Consensus size: 156
22095143 GTCTGGCTGG
* * *
22095153 GGCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCAACGAAATGAACGTGCGGGCACTCA
1 GGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAACGTGCAGGCACTCA
* * * *
22095218 GCCGGTCGGAGAGGCAGAATCGTAAACCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
66 GCCGGTCGGAGAGGCAGAATCGCAAACCGAGGATCAGCCTGGTCCCCCCTGCGTGCTGCCGATCC
* * * *
22095283 TGTTGCCACAACCCTCGGTCCGGTCC
131 CGTTGCCACAACCCTCAGTCCGCTCA
* * * * * *
22095309 GATCTTAGAC-TGGGAAAGAACTCCATATGCCTAAGTCAACCCATGAAATGAACGTGTAGGCGCT
1 G-GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAACGTGCAGGCACT
* * * *
22095373 GAGCCGG-CTGGAGAGGCATAATGCGCAAATCGAGTATCAGCCTGGTCCCCCTCTGCGTTGCTTG
64 CAGCCGGTC-GGAGAGGCAGAAT-CGCAAACCGAGGATCAGCCTGGTCCCCC-CTGCG-TGC-TG
*
22095437 CCGGTCCCGTTGCCACAACCCTCAGT-CGACT-A
124 CCGATCCCGTTGCCACAACCCTCAGTCCG-CTCA
*
22095469 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 GGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC
22095512 TAACGGCATT
Statistics
Matches: 167, Mismatches: 27, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
156 3 0.02
157 69 0.41
158 23 0.14
159 40 0.24
160 7 0.04
161 25 0.15
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
GGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAACGTGCAGGCACTCA
GCCGGTCGGAGAGGCAGAATCGCAAACCGAGGATCAGCCTGGTCCCCCCTGCGTGCTGCCGATCC
CGTTGCCACAACCCTCAGTCCGCTCA
Found at i:22095667 original size:25 final size:25
Alignment explanation
Indices: 22095631--22095678 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
22095621 TCTAATCTTA
22095631 GACTGGGAATGAACTCCATATGCTT
1 GACTGGGAATGAACTCCATATGCTT
* *
22095656 GACTGGGGATGAACTCCGTATGC
1 GACTGGGAATGAACTCCATATGC
22095679 CTAAGTCAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (25 bp):
GACTGGGAATGAACTCCATATGCTT
Found at i:22096116 original size:26 final size:26
Alignment explanation
Indices: 22096078--22096130 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22096068 GGCTCAAAAT
*
22096078 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
22096104 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
22096130 C
1 C
22096131 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22096511 original size:159 final size:158
Alignment explanation
Indices: 22096103--22096545 Score: 398
Period size: 159 Copynumber: 2.8 Consensus size: 158
22096093 AACTCCGTAT
*
22096103 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTAAG
* * * * ** * *
22096168 CCGACTGAAAAAGCAGAATGCACAAATCGAGGATCGACCC-AGTCCCCCCTACGTGCTATC-GAC
66 CCAACCGAAGAGGCAGAATGCACAAGCCG-GGATCAACCCGA-TCCCCCCTACGTGCTGTCGGAC
* *
22096231 CCTACTGTCGCAACCCTCGATCCGGTCCGA
129 CCTACAGTCACAACCCTCGATCCGGTCCGA
* ** ** * * * * *
22096261 TCTTAGAC-TGGGAATGAACTCTGTATGCAGAAGTCAACCCATGAAATGAGCGTCCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTAA
* * ** *
22096325 G-CAGACCAAAGAGGCATAATGTGCAAGCCAGGGATCAACCCGATCCCTCTCTACGTGCTGTCGG
65 GCCA-ACCGAAGAGGCAGAATGCACAAGCC-GGGATCAACCCGATCCC-CCCTACGTGCTGTCGG
* * * * *
22096389 TCCC-ACAG-CTACAACCCTCGGTTCGG-CTGGG
127 ACCCTACAGTC-ACAACCCTCGATCCGGTC-CGA
* * * *
22096420 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGGAAATGGGCGTGTGGGTGCTAAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTAAG
* * *
22096485 CCAACCGGAGAGGCAGAATGCACAAGCTGGGGATCAGA-CCGATCCCCCCTGCGTGCTGTCG
66 CCAACCGAAGAGGCAGAATGCACAAGC-CGGGATCA-ACCCGATCCCCCCTACGTGCTGTCG
22096546 ATCCTGCTAC
Statistics
Matches: 223, Mismatches: 50, Indels: 24
0.75 0.17 0.08
Matches are distributed among these distances:
157 2 0.01
158 97 0.43
159 116 0.52
160 8 0.04
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTAAG
CCAACCGAAGAGGCAGAATGCACAAGCCGGGATCAACCCGATCCCCCCTACGTGCTGTCGGACCC
TACAGTCACAACCCTCGATCCGGTCCGA
Found at i:22096615 original size:26 final size:26
Alignment explanation
Indices: 22096579--22096631 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22096569 CTGGTTCGAT
*
22096579 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
22096605 CTTACACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
22096631 C
1 C
22096632 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:22096978 original size:26 final size:26
Alignment explanation
Indices: 22096942--22096994 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22096932 CGGGTTTGAT
22096942 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22096968 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22096994 C
1 C
22096995 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22097341 original size:355 final size:353
Alignment explanation
Indices: 22096262--22097379 Score: 1156
Period size: 363 Copynumber: 3.2 Consensus size: 353
22096252 CCGGTCCGAT
* * ** * * *
22096262 CTTAGACTGGGAATGAACTCTGTATGCAGAAGTCAACCCATGAAATGAGCGTCCGGGCGCT---G
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGG
** *
22096324 A-GCAGACCAAAGAGGCATAATGTGCAAGCCAGGGATCAACCC-GAT---CC-CT-C-T-CTA-C
66 ACGC-GACCGGAGAGGCATAATGAGCAAG-CAGGGATCAACCCAG-TCCCCCTCTGCGTCCTACC
* * * * *
22096379 G-T--GCTGTCGGTCCCACAGCTACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTC
128 GATCCGCTGTCGGTCCTACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTC
* * * * * * **
22096441 CCTATGCCTAAGCCAACCCAGGAAATGGGCGTGTGGGTGCTAAGCCAACCGGAGAGGCAGAATGC
193 CCTATGCCTAAGCCAACCCACGAAA-CGGCATG-CGGCGCTCAGCCGGCCGGAGAGGCAGAATGC
* * *
22096506 ACAAGCTGGGGATCAGACCGA-TCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAATCCTC-AGT
256 GCAAGCTGGGGATC-GACCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGA-T
*
22096569 CTGGTTCGATCTTAGACTGGGAATGAACTCCGTATG
319 CCGGTT-GATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
22096605 CTTACACTGGGGATGAACTCCGTATGCCTATGTCAACCCACAAAATGAGTGTACGGGTTCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCA--
* * * *
22096670 GGATCGGAGAGGCGACTGGAGAGGCATAATGAGCAAGCTGGGATCAGCCCAGTCCTCCTCTGCGT
64 GGA-C------GCGACCGGAGAGGCATAATGAGCAAGCAGGGATCAACCCAGTCCCCCTCTGCGT
* * * * *
22096735 CCTATCGATCCGCTGCCGGTCCTGCTGCCACAACCCTCAGTCCGA-TTGGGCTTAGACATGGAAT
122 CCTACCGATCCGCTGTCGGTCCTACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAAT
* * * *
22096799 CAACTTCCCTATGCCTAAGCCAA-CCACGAAACGGGAGTGCGGCGCTCAACCGGCCGGAGATGCA
187 GAAC-TCCCTATGCCTAAGCCAACCCACGAAACGGCA-TGCGGCGCTCAGCCGGCCGGAGAGGCA
* * **
22096863 GAATGCGCAAGCTGGGGATTGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTG-TACCGCCAACCC
250 GAATGCGCAAGCTGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTACCG-CAACCC
*
22096927 TCGATCGGGTTTGATCTTAGACTGGGAATGAACTCCGTATG
314 TCGATCCGG-TTGATCTTAGACTGGGAATGAACTCCGTATG
*
22096968 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGTGCTCA-G
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGG
* * * *
22097032 -C-CGACCGGAGAGGCATAATGCG-AAGCAGAGGATTAACCC-GATCCCCCTCTGCGTGCTGCCG
66 ACGCGACCGGAGAGGCATAATGAGCAAGCAG-GGATCAACCCAG-TCCCCCTCTGCGTCCTACCG
22097093 ATCCCGCTGTCGGTCCTACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTC
129 AT-CCGCTGTCGGTCCTACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTC
* * * * *
22097158 CGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAGTCGGTCGGAGAGGCAAAATGT
193 CCTATGCCTAAGCCAACCCACGAAACG-GCATGCG-GCGCTCAGCCGGCCGGAGAGGCAGAATGC
* * **
22097223 GCAAGTTGGGGATCGACCCAGTCCCCTCATGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGATC
256 GCAAGCTGGGGATCGACCCAGTCCCC-CCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATC
* *
22097288 CGGTCTGATCTTAGACTGGGAATGAACTCTGCATG
320 CGGT-TGATCTTAGACTGGGAATGAACTCCGTATG
* * *
22097323 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG
1 CTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGG
22097380 CACTCAATTG
Statistics
Matches: 643, Mismatches: 90, Indels: 72
0.80 0.11 0.09
Matches are distributed among these distances:
343 49 0.08
348 2 0.00
350 6 0.01
351 45 0.07
352 50 0.08
353 35 0.05
354 59 0.09
355 133 0.21
356 6 0.01
357 2 0.00
358 3 0.00
359 1 0.00
360 2 0.00
361 3 0.00
362 10 0.02
363 160 0.25
364 33 0.05
365 44 0.07
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (353 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGG
ACGCGACCGGAGAGGCATAATGAGCAAGCAGGGATCAACCCAGTCCCCCTCTGCGTCCTACCGAT
CCGCTGTCGGTCCTACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCT
ATGCCTAAGCCAACCCACGAAACGGCATGCGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAG
CTGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGGTTG
ATCTTAGACTGGGAATGAACTCCGTATG
Found at i:22097349 original size:26 final size:26
Alignment explanation
Indices: 22097297--22097349 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22097287 CCGGTCTGAT
*
22097297 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
22097323 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
22097349 C
1 C
22097350 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:22097496 original size:184 final size:185
Alignment explanation
Indices: 22097137--22097500 Score: 536
Period size: 185 Copynumber: 2.0 Consensus size: 185
22097127 TCCGACTGGG
* *
22097137 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCACTCAA
* * * * *
22097202 TCGGTCGGAGAGGCAAAATGTGCAAGTTGGGGATCGACCCAGTCCCCTCATGCGTGCTGTCGATC
66 TCGGCCGGAGAGGCAAAATGCGCAAGTTCGGGATCGACCCAGTCCCCCCATGCGTGCTATCGATC
** **
22097267 CTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGCAT
131 CTGCTGTCGCAACCCTCGATCCAATCCAATCTTAGACTGGGAATGAACTCTGCAT
* *
22097322 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCACTCAA
* * * *
22097387 TTGGCCGGAGAGGCAGAATGCGCAAG-TCGGGATCG-GCCTGATCCCCCCATGCGTGCTATCGAT
66 TCGGCCGGAGAGGCAAAATGCGCAAGTTCGGGATCGACCCAG-TCCCCCCATGCGTGCTATCGAT
22097450 CCTGCTG-CTGCAACCCTCGATCCAATCCAATCTTAGACTGGGAATGAACTC
130 CCTGCTGTC-GCAACCCTCGATCCAATCCAATCTTAGACTGGGAATGAACTC
22097501 CGTATGGCTA
Statistics
Matches: 160, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
183 4 0.03
184 73 0.46
185 83 0.52
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCACTCAA
TCGGCCGGAGAGGCAAAATGCGCAAGTTCGGGATCGACCCAGTCCCCCCATGCGTGCTATCGATC
CTGCTGTCGCAACCCTCGATCCAATCCAATCTTAGACTGGGAATGAACTCTGCAT
Found at i:22097802 original size:158 final size:157
Alignment explanation
Indices: 22097323--22097820 Score: 484
Period size: 158 Copynumber: 3.1 Consensus size: 157
22097313 ACTCTGCATG
* *
22097323 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * *
22097387 TTGGCCGGAGAGGCAGAATGCGCAAGTC-GGGATCGGCCTGATCCCCCCATGCGTGCTATCGATC
65 CCGGCCGGAGAGGCAGAATGAGCAAGTCGGGGATCAGCCCGGTCCCCCC-TGCGTGCTGTCGATC
* **
22097451 CTGCTGCTGCAACCCTCGATCCAATCCAAT
129 CTGCTGC-GCAACCCTCGATCCAGTCTGAT
* * ** * * *
22097481 CTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCATAAAACGAGCGTGCAGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * *
22097546 CTACCGAGAGAGGCATAATGATCAAGTCGGGGATCAGCCCGGTCCCCTCTGCGTGCTGTCGGTCC
66 CGGCCG-GAGAGGCAGAATGAGCAAGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
** * * **
22097611 CACTGCCACAACCCTCGATCTAG-CTGGGG
130 TGCTG-CGCAACCCTCGATCCAGTCT-GAT
* * * * *
22097640 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAATCCACGAAATGGGCGTGTGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
22097704 CCGGTCGGAGAGGTAGAATGGGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTTGATCC
65 CCGGCCGGAGAGGCAGAATGAGCAAGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* *
22097769 TGCTGTCGCAAACCTC-AGTCCGGTCTGAT
130 TGCTG-CGCAACCCTCGA-TCCAGTCTGAT
*
22097798 CTTAGGCTGGGAATGAACTCCGT
1 CTTAGACTGGGAATGAACTCCGT
22097821 CTACTTAGAC
Statistics
Matches: 266, Mismatches: 65, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.01
158 141 0.53
159 104 0.39
160 18 0.07
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGAGCAAGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCGCAACCCTCGATCCAGTCTGAT
Found at i:22106865 original size:26 final size:26
Alignment explanation
Indices: 22106826--22106876 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
22106816 GGTCTGATGA
22106826 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTTCGTATGCT
*
22106852 TAGACTGGGGATGAACTTCGTATGC
1 TAGACTGGGAATGAACTTCGTATGC
22106877 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTTCGTATGCT
Found at i:22107577 original size:159 final size:158
Alignment explanation
Indices: 22107229--22107675 Score: 402
Period size: 159 Copynumber: 2.8 Consensus size: 158
22107219 AACTCCATAT
* * * * *
22107229 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCATCCCACGAAAGGAGCATCCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * ** * * *
22107294 CCGGCTGGAGAGGTAGAATGCGCAAGTTGGGGATCGGCCCGGTCCCTCCTGCGTGCTATCTATCC
66 CCGGCTGAAGAAGAAGAATGCGCAAGACGGGGATCGGCCCGATCCCCCCTGCGTGCTATCCATCC
* * *
22107359 TGCTACCGCAACCCTCGGTCCGATCCAA
131 CGATACCACAACCCTCGGTCCGATCCAA
* * * * * *
22107387 TCTTAGA-TTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* *
22107451 GCCGG-TCGAAGAAGAATAATGCGCAAGACGGGGATCGGCCCGATCCCCCTCTGCGTTCTA-CCA
65 GCCGGCT-GAAGAAGAAGAATGCGCAAGACGGGGATCGGCCCGATCCCCC-CTGCGTGCTATCCA
* * * ***
22107514 GTCCCGATGCCATAACCCTCGGTTCGA-CTGGG
128 -TCCCGATACCACAACCCTCGGTCCGATC-CAA
* * *
22107546 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * * * * *
22107611 CCAG-TCGGAGAGGCAGAATACACAA-ATCGGGGATTGGCCCGATCCCTCTTGCGTGCTATCGAT
66 CCGGCT-GAAGAAGAAGAATGCGCAAGA-CGGGGATCGGCCCGATCCCCCCTGCGTGCTATCCAT
22107674 CC
129 CC
22107676 TGCTGCTGGT
Statistics
Matches: 230, Mismatches: 51, Indels: 16
0.77 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 105 0.46
159 122 0.53
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGCTGAAGAAGAAGAATGCGCAAGACGGGGATCGGCCCGATCCCCCCTGCGTGCTATCCATCC
CGATACCACAACCCTCGGTCCGATCCAA
Found at i:22107998 original size:513 final size:513
Alignment explanation
Indices: 22107024--22108104 Score: 1148
Period size: 513 Copynumber: 2.1 Consensus size: 513
22107014 ACCCTTAGGC
* * * *
22107024 CGACTAGGGCTTAGACATGGAATGAACTCCGCATGCTTAAGCCAACCCATGAAATGAGCATGCGG
1 CGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCAG
* * ** * *
22107089 GCGCTCAGCCGATCAAAGAGACAGAATGCGTAAGTCGAGGATCGACCCGGTCCCCTCCTACGTGC
66 GCACTCAGCCGATCAAAGAGACAGAATACACAAATCGAGGATCGACCCGATCCCCTCCTACGTGC
* * * * * * ** *
22107154 TGTCGATCTTGCTGCTAGTCTTGCTGCTCCAACGCTCGGTCCGATCTGATCTTAGATTGGGAACG
131 TATCGATCCTGCTGCTAGTCCTACTGCTCCAACCCTCAGTCCGATCCAATCTTAGACTGGGAACG
* *
22107219 AACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCATCCCACGAAAGGAGCATCC
196 AACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAAGGAGCATCC
* * * ** * * * * * * *
22107284 GGGCGCTCAGCCGGCTGGAGAGGTAGAATGCGCAAGTTGGGGATCGGCCCGGTCCCTCCTGCGTG
261 GGGCACTCAGCCGGCTGAAGAGGCAGAATGCGCAAGCCGAGGACCGACCCGATCCCCCCTACATG
* ** * *
22107349 CTATCTATCCTGCTACCGCAACCCTCGGTCCGATCCAATCTTAGATTGGGAATGAACTCCATATG
326 CTATCAATCCTGCTACCGCAACCCTCAATCCGATCCAATCTTAGACTAGGAATGAACTCCATATG
* * * ** * *
22107414 CCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAGCCGGTCGAAGAAGAATAATGCGCAAGA
391 CCTAAGTCAACCCACGAAACGAGCGTACAGGCACTGAACCGGACGAAGAAGAATAATGCGCAAGA
* * * * * *
22107479 CGGGGATCGGCCCGATCCCCCTCTGCGTTCTACC-AGTCCCGATGCCATAACCCTCGGTT
456 CGGGGATCAGCCCGATCCCCCTCTGAGTGCTACCGA-TCCCGATACCACAACCCTCAG-T
*
22107538 CGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAG
1 CGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCAG
** * * * * * *
22107603 GCACTCAGCC-AGTCGGAGAGGCAGAATACACAAATCGGGGATTGGCCCGAT-CCCTCTTGCGTG
66 GCACTCAGCCGA-TCAAAGAGACAGAATACACAAATCGAGGATCGACCCGATCCCCTCCTACGTG
* * * *
22107666 CTATCGATCCTGCTGCTGGTCCTACTG-TCGTAACCCTTAGTCCGGTCCAATCTTAGACTGGGAA
130 CTATCGATCCTGCTGCTAGTCCTACTGCTC-CAACCCTCAGTCCGATCCAATCTTAGACTGGGAA
* ** * * * *
22107730 TGAACTCTGTATGCTTAGGCATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAATGAGCGT
194 CGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAAGGAGCAT
* * *
22107795 GCGGGCATTCAGCCAG-TCGAAGAGGCAGAATGCGCAAGCCGAGGACCGACCCGATCCCCCCTAC
259 CCGGGCACTCAGCCGGCT-GAAGAGGCAGAATGCGCAAGCCGAGGACCGACCCGATCCCCCCTAC
* * * * ** * *
22107859 ATTCTATCAATCTTGCTACCGTAACCCTCAATCCGGTCTGATCTTAGACTAGGAATGAACTTCGT
323 ATGCTATCAATCCTGCTACCGCAACCCTCAATCCGATCCAATCTTAGACTAGGAATGAACTCCAT
** * * * *
22107924 ATGCCTAAGTCAACCCATTAAACGAGCGTACAGGCATTGAACTGGAC-AGAGAGGCATAATGCGC
388 ATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCACTGAACCGGACGA-AGAAGAATAATGCGC
* * * * * * * *
22107988 AAGCCGGGGATCAGCTCGGTCCCTCTTTGAGTGCTGCCGATCTCGTTACCACAACCCTCAGT
452 AAGACGGGGATCAGCCCGATCCCCCTCTGAGTGCTACCGATCCCGATACCACAACCCTCAGT
* * ** *
22108050 CTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAAACAACCCACGAAA
1 CGA-CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
22108105 CGGGCATGGG
Statistics
Matches: 460, Mismatches: 101, Indels: 13
0.80 0.18 0.02
Matches are distributed among these distances:
512 7 0.02
513 355 0.77
514 98 0.21
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (513 bp):
CGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCAG
GCACTCAGCCGATCAAAGAGACAGAATACACAAATCGAGGATCGACCCGATCCCCTCCTACGTGC
TATCGATCCTGCTGCTAGTCCTACTGCTCCAACCCTCAGTCCGATCCAATCTTAGACTGGGAACG
AACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAAGGAGCATCC
GGGCACTCAGCCGGCTGAAGAGGCAGAATGCGCAAGCCGAGGACCGACCCGATCCCCCCTACATG
CTATCAATCCTGCTACCGCAACCCTCAATCCGATCCAATCTTAGACTAGGAATGAACTCCATATG
CCTAAGTCAACCCACGAAACGAGCGTACAGGCACTGAACCGGACGAAGAAGAATAATGCGCAAGA
CGGGGATCAGCCCGATCCCCCTCTGAGTGCTACCGATCCCGATACCACAACCCTCAGT
Found at i:22108248 original size:26 final size:26
Alignment explanation
Indices: 22108219--22108269 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
22108209 GACCTGATGA
*
22108219 TAGACTGGGAATGAATTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
22108245 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
22108270 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:22108623 original size:26 final size:26
Alignment explanation
Indices: 22108585--22108637 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22108575 CTGGTCTGAT
22108585 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22108611 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22108637 C
1 C
22108638 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22108845 original size:867 final size:870
Alignment explanation
Indices: 22107521--22109423 Score: 2228
Period size: 867 Copynumber: 2.2 Consensus size: 870
22107511 CCAGTCCCGA
*
22107521 TGCCATAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 TGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * *
22107586 ATGAAATGAGCGTGCAGGCACTCAGCCAGTCGGAGAGGCAGAATACACAAATCGGGGATTGGCCC
66 ATGAAATGAGCGTGCGGGCAGTCAGCCAGACGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCC
* * * * * *
22107651 GATCCCTCTTGCGTGCTATCGATCCTGCTGCTGGTCCTACTGTCGTAACCCTTAGTCCGGTCCAA
131 GATCCCCCCTGCGTGCTACCGATCCTGCTGCTGGTCCTACTATCGCAACCCTCAGTCCGGTCCAA
* * *
22107716 TCTTAGACTGGGAATGAACTCTGTATGCTTAGGCATGGAATGAACTCTGTATGCCTAAGCCAACC
196 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * **
22107781 CATAAAATGAGCGTGCGGGCATTCAGCCAGTCGAAGAGGCAGAATGCGCAAGCCGAGGACCGACC
261 CACAAAACGAGCGTGCGGGCA-TCAACCAGAAGAAGAGGCAGAATGCGCAAGCCGAGGACCGACC
* * * **
22107846 CGATCCCCCCTACATTCTATCAATCTTGCTACCGTAACCCTCAATCCGGTCTGATCTTAGACTAG
325 CAATCCCCCCTACATGCTATCAATCCTGCTACCACAACCCTCAATCCGGTCTGATCTTAGACTAG
**
22107911 GAATGAACTTCGTATGCCTAAGTCAACCCATTAAACGAGCGTACAGGCATTGAACTGGACAGAGA
390 GAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCATTGAACTGGACAGAGA
* * * * **
22107976 GGCATAATGCGCAAGCCGGGGATCAGCTCGGTCCCTCTTTGAGTGCTGCCGATCTCGTTACCACA
455 GGCATAATGCACAAGCCGGGGATCAGCCCGGTCCCCCTTTGAGTGCTGCCGATCCCACTACCACA
* *
22108041 ACCCTCAGTCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAAACAACCCACGAAAC
520 A-CCTCAGTCTAGCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAAACAACCAACGAAAC
** * *
22108106 GGGCATGGGGACGCTCAGCCAATC-GTAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAGTCCC
584 GGGCATGCCGACGCTCAGCCAATCAG-AGA-GCAAAATGCACAAGCCGAGGATCGGCCCAGTCCC
* ** * * *
22108170 C-CTACGTGCTGTCGATCCTGTTGCCACAACCCTCGAT-TCGACCTGATGATAGACTGGGAATGA
647 CTCTACGTGCTGCCGATCCTACTGCCACAACCCTCGATCCCG-CCTGATCATAGACTAGGAATGA
*
22108233 A-TTCCGTATGCTTAGACTGG-GGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCATA
711 ACTT-CGTATGCTTAGACTGGTGG-TGAACACCGTATGCCTAAGTCAACCCACAAAACAAGCATA
* *
22108296 CGGACGCTCAACCGA-CTG-GA-GAG-GT-AAAATGCGTAAGCCGAGGATCAGCCCGGTCCCCCT
774 CGGACGCTCAACCGACCAGAGAGGAGAGTCAAAATGCGTAAGCCGAGGATCAACCCGGTCCCCCT
* * **
22108356 -TTGTGTGCTATCGATCCCGCTGCTGGTCCTGT
839 CTT-CGTGCTACCGATCCCGCTGCTGGTCCTAC
* ** *
22108388 TGCCATAACCCTCGGTCCGGCTGGGGCTTAGATGTGGAATGAACTCTGTATGCCTAAGCCAACCC
1 TGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * *
22108453 ACGAAATGAGCGTGCGGGCAGTCAGCCAGCCGGAGAGGCAGAATGCGCAAGTAGGGGATCGGCCC
66 ATGAAATGAGCGTGCGGGCAGTCAGCCAGACGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCC
* * * * * * **
22108518 GATCCTCCCCTGTGTGCTGCCGATCCTGTTGTTGGTCCTGCTATCGCAACCCTCAGTCTGGTCTG
131 GATCC-CCCCTGCGTGCTACCGATCCTGCTGCTGGTCCTACTATCGCAACCCTCAGTCCGGTCCA
22108583 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
195 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
22108648 CCACGAAACGAGTGTGCTGGTGC-TCAACC-GAAAGGAGAGGCAGAAT-CGCAAGCCG-GAGATC
260 CCACAAAACGAGCGTGC-GG-GCATCAACCAG-AAGAAGAGGCAGAATGCGCAAGCCGAG-GACC
* * * * ** *
22108709 GACCCAATCCCTCCTACGTGCTATCGATCCTGCTACCACAACCTTCTGTTCGGTCTGATCTTAGA
321 GACCCAATCCCCCCTACATGCTATCAATCCTGCTACCACAACCCTCAATCCGGTCTGATCTTAGA
* * * * *
22108774 CTGGGAATGAAC-TCTGTATGCCTAAGTCAACCCACGAGACGAGCGTACGGGCGTTGAGCT-GAT
386 CTAGGAATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCATTGAACTGGA-
* * * * *
22108837 CGGAGAGGCATAATGCACAAGCTGGGGATGAGCCCGGTCCCCCTTTGCGTGCTGTCGATCCCACT
449 CAGAGAGGCATAATGCACAAGCCGGGGATCAGCCCGGTCCCCCTTTGAGTGCTGCCGATCCCACT
* * ** * * **
22108902 GCCCCAACCTTGGTTTGGCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCAAC
514 ACCACAACCTCAGTCTAGCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAAACAACCAAC
* * * * * ** *
22108967 GAAATGGGCATGCCGACGCTCAGCCGATCAGAGAGCAAAATGCACAAGTCGGGGTTCGGTTCGGT
579 GAAACGGGCATGCCGACGCTCAGCCAATCAGAGAGCAAAATGCACAAGCCGAGGATCGGCCCAGT
* * * * *
22109032 CCCCTCTGCGTGCTGCCGATCCTACTGTCACAACCCTTGATCCCGTCTGATCTTAGACTAGGAAT
644 CCCCTCTACGTGCTGCCGATCCTACTGCCACAACCCTCGATCCCGCCTGATCATAGACTAGGAAT
* * * * **
22109097 GAACTTTGTATGCTTAGACTGGTGGTGAACACCGTATGCCTAAGTCAACTCACGAAACGAGGGTA
709 GAACTTCGTATGCTTAGACTGGTGGTGAACACCGTATGCCTAAGTCAACCCACAAAACAAGCATA
** * *
22109162 CGGGTGCTCAACCGACCAGAGAGGCCGGTTGGAGAGTCATAATGCGTAAGCCGGGGATCAACCCG
774 CGGACGCTCAACCGACCAGAGA--------GGAGAGTCAAAATGCGTAAGCCGAGGATCAACCCG
* *
22109227 GTCCCTCTCTTCGTGCTGCCGATCCCGCTGCTGGTCCTAC
831 GTCCCCCTCTTCGTGCTACCGATCCCGCTGCTGGTCCTAC
* * *
22109267 TGCCAAAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTGTGCTTAAGCCAACCC
1 TGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * ** * *
22109332 ATGAAACGAGCATGCGGGC-GCTCAATC-GACGGAGAGGCAGAATGCGCAAGCCGGGGACCGGCC
66 ATGAAATGAGCGTGCGGGCAG-TCAGCCAGACGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCC
* *
22109395 C-AGTCCCCCCTACGTGCT-TCGATCCTGCT
130 CGA-TCCCCCCTGCGTGCTACCGATCCTGCT
22109424 ACCACAACCC
Statistics
Matches: 866, Mismatches: 142, Indels: 47
0.82 0.13 0.04
Matches are distributed among these distances:
865 27 0.03
866 194 0.22
867 305 0.35
868 139 0.16
869 2 0.00
870 2 0.00
876 9 0.01
877 14 0.02
878 39 0.05
879 133 0.15
880 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (870 bp):
TGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ATGAAATGAGCGTGCGGGCAGTCAGCCAGACGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCC
GATCCCCCCTGCGTGCTACCGATCCTGCTGCTGGTCCTACTATCGCAACCCTCAGTCCGGTCCAA
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CACAAAACGAGCGTGCGGGCATCAACCAGAAGAAGAGGCAGAATGCGCAAGCCGAGGACCGACCC
AATCCCCCCTACATGCTATCAATCCTGCTACCACAACCCTCAATCCGGTCTGATCTTAGACTAGG
AATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCATTGAACTGGACAGAGAG
GCATAATGCACAAGCCGGGGATCAGCCCGGTCCCCCTTTGAGTGCTGCCGATCCCACTACCACAA
CCTCAGTCTAGCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAAACAACCAACGAAACGG
GCATGCCGACGCTCAGCCAATCAGAGAGCAAAATGCACAAGCCGAGGATCGGCCCAGTCCCCTCT
ACGTGCTGCCGATCCTACTGCCACAACCCTCGATCCCGCCTGATCATAGACTAGGAATGAACTTC
GTATGCTTAGACTGGTGGTGAACACCGTATGCCTAAGTCAACCCACAAAACAAGCATACGGACGC
TCAACCGACCAGAGAGGAGAGTCAAAATGCGTAAGCCGAGGATCAACCCGGTCCCCCTCTTCGTG
CTACCGATCCCGCTGCTGGTCCTAC
Found at i:22109817 original size:26 final size:26
Alignment explanation
Indices: 22109779--22109831 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22109769 CCGGTCCGAT
*
22109779 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACGCCATATG
*
22109805 CTTAGACAT-GGAATGAACGCCGTATG
1 CTTAGAC-TGGGAATGAACGCCATATG
22109831 C
1 C
22109832 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCATATG
Found at i:22110152 original size:159 final size:158
Alignment explanation
Indices: 22109804--22110166 Score: 424
Period size: 158 Copynumber: 2.3 Consensus size: 158
22109794 AACTCCATAT
* * * ** **
22109804 GCTTAGACATGGAATGAACGCCGTATGCCTAAGCCAACCCCCGAAACGAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAG
* * ** *
22109869 TCGGTCGAAGAGGCAGAATGCACAAGTCGGGGACCGCCCCGGTCCCCCCTACGTGCTGTCGATCC
66 CCGGTCGAAGAGGCACAATGCACAAACCGGGGACCGACCCGGTCCCCCCTACGTGCTGTCGATCC
*
22109934 TGCTGCCACAACCCTCGGTCCGGTCCAA
131 TGCTACCACAACCCTCGGTCCGGTCCAA
* * *
22109962 TCTTAGAC-TGGGAATGCACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCA
* * * * *
22110026 GCCGGAT-GGAGAGGCACAATGCGCAAACCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGG
65 GCCGG-TCGAAGAGGCACAATGCACAAACCGGGGACCGACCCGGTCCCCC-CTACGTGCTGTCGA
* ****
22110090 TCCTGCTACCACAACCCTCGGTCTGGTTGGG
128 TCCTGCTACCACAACCCTCGGTCCGGTCCAA
* * *
22110121 GCTTAGACATGGAATAAACTCCCTATGCCTAAGTCAACCAACGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
22110167 AGGGCATGCC
Statistics
Matches: 170, Mismatches: 31, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
157 1 0.01
158 91 0.54
159 77 0.45
160 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAG
CCGGTCGAAGAGGCACAATGCACAAACCGGGGACCGACCCGGTCCCCCCTACGTGCTGTCGATCC
TGCTACCACAACCCTCGGTCCGGTCCAA
Found at i:22110218 original size:159 final size:158
Alignment explanation
Indices: 22109864--22110299 Score: 378
Period size: 159 Copynumber: 2.8 Consensus size: 158
22109854 CGTGTGGGTG
* * * * *
22109864 CTCAGTCGGTCGAAGAGGCAGAATGCACAAG-TCGGGGACCGCCCCGGTCCCCCCTACGTGCTGT
1 CTCAGCCGGACGAAGAGGCAGAATGCACAAGCT-GGGGATCGACCCGGTCCCCCCTGCGTGCTGT
* * ** *
22109928 CGATCCTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGCACTCCGTATGCCTA
65 CGATCCTGCTACCACAACCCTCGGTCCGGTCCAAGCTTAGACTGGGAATAAACTCCCTATGCCTA
* * * * *
22109993 AGTCAACCCACGAAACGAGCGTACGGGCA
130 AGTCAACCAACGAAAAGAGCATACCGACA
* * * * * * *
22110022 CTGAGCCGGATGGAGAGGCACAATGCGCAAACCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGT
1 CTCAGCCGGACGAAGAGGCAGAATGCACAAGCTGGGGATCGACCCGGTCCCCC-CTGCGTGCTGT
* * ****
22110087 CGGTCCTGCTACCACAACCCTCGGTCTGGTTGGGGCTTAGACAT-GGAATAAACTCCCTATGCCT
65 CGATCCTGCTACCACAACCCTCGGTCCGGTCCAAGCTTAGAC-TGGGAATAAACTCCCTATGCCT
* * *
22110151 AAGTCAACCAACGAAAAGGGCATGCCGACG
129 AAGTCAACCAACGAAAAGAGCATACCGACA
* * *
22110181 CTCAGCC-GACCGAAGAGGCAGAATTTC-CAAGCTGGGGATC-AGCTCGATCCCCCCTGCGTGCT
1 CTCAGCCGGA-CGAAGAGGCAGAA-TGCACAAGCTGGGGATCGA-CCCGGTCCCCCCTGCGTGCT
** ** * * *** * *
22110243 ACCGATCCTGCTACCGTAACCTTTGGTCCGGTTTGATCTTAGACTGGGAATGAACTC
63 GTCGATCCTGCTACCACAACCCTCGGTCCGGTCCAAGCTTAGACTGGGAATAAACTC
22110300 TGTATGCTTA
Statistics
Matches: 219, Mismatches: 52, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
157 1 0.00
158 96 0.44
159 119 0.54
160 3 0.01
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (158 bp):
CTCAGCCGGACGAAGAGGCAGAATGCACAAGCTGGGGATCGACCCGGTCCCCCCTGCGTGCTGTC
GATCCTGCTACCACAACCCTCGGTCCGGTCCAAGCTTAGACTGGGAATAAACTCCCTATGCCTAA
GTCAACCAACGAAAAGAGCATACCGACA
Found at i:22110316 original size:26 final size:26
Alignment explanation
Indices: 22110280--22110332 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22110270 CCGGTTTGAT
*
22110280 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
22110306 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22110332 C
1 C
22110333 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22110440 original size:514 final size:519
Alignment explanation
Indices: 22109358--22110503 Score: 1178
Period size: 514 Copynumber: 2.2 Consensus size: 519
22109348 GGCGCTCAAT
* * *
22109358 CGACGGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCAGTCCCCCCTACGTGCT-TCGATCCTG
1 CGACGGAGAGGCACAATGTGCAAGCC-GGGACCGACCCAGTCCCCCCTACGTGCTGTCGATCCTG
* *
22109422 CTACCACAACCCTTGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACA
65 CTACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACA
* *** * * *
22109487 CACGAAACGAGCGTGCGGGTGTTGAGCCGACTGAAGAGGAATAATTCGCACGACAGGGATCGAGC
130 CACGAAACGAGCGTACGGGCACTGAGCCGACTGAAGAGGAACAATGCGCACAACAGGGATCGAGC
* *
22109552 CCGATCCCCCTCTGCGTGCTGCCAGTCACGATGCCACGACCCTCAGTCCGGATAGGGCTTAGACA
195 CCGATCCCCCTCTGCGTGCTGCCAGTCACGATACCACAACCCTCAGTCCGGATAGGGCTTAGACA
* * * * * ** ** * ** *
22109617 TGGAATGAATTCCGTATGCCTAAGCTAACCCACGAGACAAGCGTGTGGGTGCTCAATCGGTCGGA
260 TGGAATAAACTCCCTATGCCTAAGCTAACCAACGAGACAAGCATGCCGACGCTCAACCGACCGAA
* * * *
22109682 GAGGCAGAATGCACAAGCCAGGGATCGGCTCGGTCCCCCATGCATGCTGTCGATCCTGCTGCTGG
325 GAGGCAGAATGCACAAGCCAGGGATCAGCTCGATCCCCCA--CATGCTGTCGA--CTAC-GCTGA
22109747 TCCTACTACCACAACCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
385 TCCTACTACCACAACCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* * ** * **
22109812 ATGGAATGAACGCCGTATGCCTAAGCCAACCCCCGAAACGAGCGTGTGGGTGCTCAGTCGGTCGA
450 ATGGAATGAACGCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAATCGACCGA
22109877 AGAGG
515 AGAGG
* * *
22109882 C-A--GA-ATGCACAA-GT-C--G--GGGACCGCCCCGGTCCCCCCTACGTGCTGTCGATCCTGC
1 CGACGGAGAGGCACAATGTGCAAGCCGGGACCGACCCAGTCCCCCCTACGTGCTGTCGATCCTGC
* * * * *
22109937 TGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGCACTCCGTATGCCTAAGTCAACCC
66 TACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACAC
* * *
22110002 ACGAAACGAGCGTACGGGCACTGAGCCGGA-TGGAGAGGCACAATGCGCA-AACCGGGGATCGA-
131 ACGAAACGAGCGTACGGGCACTGAGCC-GACTGAAGAGGAACAATGCGCACAA-CAGGGATCGAG
* * * * * * * *
22110064 CCCGGTCCCCCTCTGCGTGCTGTCGGTC-CTGCTACCACAACCCTCGGTCTGGTTGGGGCTTAGA
194 CCCGATCCCCCTCTGCGTGCTGCCAGTCAC-GATACCACAACCCTCAGTCCGGATAGGGCTTAGA
*
22110128 CATGGAATAAACTCCCTATGCCTAAG-TCAACCAACGA-A-AAGGGCATGCCGACGCTCAGCCGA
258 CATGGAATAAACTCCCTATGCCTAAGCT-AACCAACGAGACAA--GCATGCCGACGCTCAACCGA
* **
22110190 CCGAAGAGGCAGAATTTC-CAAGCTGGGGATCAGCTCGATCCCCC-C-TGC-GT-G-CTAC-C-G
320 CCGAAGAGGCAGAA-TGCACAAGCCAGGGATCAGCTCGATCCCCCACATGCTGTCGACTACGCTG
* ** * ** **
22110247 ATCCTGCTACCGTAACCTTTGGTCCGGTTTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
384 ATCCTACTACCACAACCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
* * * * *
22110312 -TTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGACGCTCAATCGACC
449 CAT-GGAATGAACGCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAATCGACC
22110376 GGAA-AGG
513 -GAAGAGG
* * * * * *
22110383 CCGACTGGAGAGGCATAATGTGCAAGCCAGGGATCGACCCAGTACCCCATGCGTGCTGTCGATCT
1 -CGAC-GGAGAGGCACAATGTGCAAGCC-GGGACCGACCCAGTCCCCCCTACGTGCTGTCGATCC
* * * *
22110448 TGCTATCGCAACCCTCGGTCTGGTCCGATCATAGACTGGGAATGAACTCTGTATGC
63 TGCTACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
22110504 TTAGACATGG
Statistics
Matches: 509, Mismatches: 90, Indels: 56
0.78 0.14 0.09
Matches are distributed among these distances:
500 1 0.00
501 110 0.22
502 5 0.01
503 1 0.00
504 3 0.01
506 2 0.00
507 7 0.01
508 4 0.01
509 4 0.01
510 1 0.00
511 3 0.01
512 3 0.01
513 156 0.31
514 194 0.38
515 2 0.00
516 1 0.00
518 1 0.00
519 1 0.00
520 6 0.01
521 2 0.00
523 1 0.00
524 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (519 bp):
CGACGGAGAGGCACAATGTGCAAGCCGGGACCGACCCAGTCCCCCCTACGTGCTGTCGATCCTGC
TACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACAC
ACGAAACGAGCGTACGGGCACTGAGCCGACTGAAGAGGAACAATGCGCACAACAGGGATCGAGCC
CGATCCCCCTCTGCGTGCTGCCAGTCACGATACCACAACCCTCAGTCCGGATAGGGCTTAGACAT
GGAATAAACTCCCTATGCCTAAGCTAACCAACGAGACAAGCATGCCGACGCTCAACCGACCGAAG
AGGCAGAATGCACAAGCCAGGGATCAGCTCGATCCCCCACATGCTGTCGACTACGCTGATCCTAC
TACCACAACCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAA
TGAACGCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAATCGACCGAAGAGG
Found at i:22110940 original size:26 final size:26
Alignment explanation
Indices: 22110911--22110966 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
22110901 ATGGTCCGAT
22110911 CTTAGACTGAGAATGAACTCCGTAAG
1 CTTAGACTGAGAATGAACTCCGTAAG
* ** *
22110937 CTTAGACTGGGCTTGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTAAG
22110963 CTTA
1 CTTA
22110967 AATCACCCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTAAG
Found at i:22111946 original size:317 final size:315
Alignment explanation
Indices: 22111303--22112072 Score: 899
Period size: 317 Copynumber: 2.4 Consensus size: 315
22111293 AACTTCGTAT
* *
22111303 GCTTAGACATGGAATGAACTCTGC-ATGCCTAAGCCAACCCATGAAACGAGGGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTC-CCTATGCCTAAGCCAACCCATGAAACG-GGGTGCGGGCGCTCA
* *
22111367 CCCAGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATC
64 -CCAGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
* ** *
22111432 CTGCTACCGTAACCATCAGTCCGATCCACTCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
128 CTGTTACCCCAACCATCAGTCCGATCCACTCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * *
22111497 ACCTATGAAACGAGCTTACGGGCGCTGAGCAGACCGGAGAGGCATAATGCGCAAGCCGAGGATCG
193 ACCAATAAAACGAACGTACGAGCGCTCAGCAGACCGGAGAGGCATAATGCGCAAACCGAGGATCG
* * * *
22111562 ACCCGGTTCCCCTCTGCGTGCTACCGGTCCCACTACAACAACCTTCCATCCGACTAGG
258 ACCCGGTCCCCCTCTGCGTACTACCGATCCCACTACAACAACCCTCCATCCGACTAGG
* *
22111620 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAAACCATGAAACGGGTGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGG-GTGCGGGCGCTC-A
* * *
22111685 CC-GATCGGAGAGGCAGAATGCGCAAG-TCGGGGATCGACCCGGTGCCCCTCTGCGTGTTGTCGA
64 CCAG-TCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGGCCCGGT-CCCCCCTGCGTGCTGTCGA
* * * * * *
22111748 TCCTGTTGCCCCAACCCTCGGTCTGGTCCGA-TCTTAGACTAGGAATGAACTTCGTATGCCTAAG
126 TCCTGTTACCCCAACCATCAGTCCGATCC-ACTCTTAGACTAGGAATGAACTCCGTATGCCTAAG
* * *
22111812 TCAACCAATAAAACGAACGTGCGAGCGCTCAGTC-G-GCGGAAGAGGCATAATGCGCAAACCGGG
190 TCAACCAATAAAACGAACGTACGAGCGCTCAG-CAGACCGG-AGAGGCATAATGCGCAAACCGAG
* ** * ** ** *
22111875 GATC-AGCCCGGTCCCCCTCTGCGTACTGCCGATCCTGCTACCACAACCCTCGGT-CGGTTGGG
253 GATCGA-CCCGGTCCCCCTCTGCGTACTACCGATCCCACTACAACAACCCTCCATCCGACTAGG
* * * *
22111937 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAGGCGTGCAGGCGCTCGG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-CGGGGTGCGGGCGCTC-A
* * * * *
22112002 CCAGTCGGAGAGGTAGAATGCGTAAGCTGGGGATCGGCCCAGTCCCCCCTGCATGCTGTTGATCC
64 CCAGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
22112067 TGTTAC
129 TGTTAC
22112073 GGTAACCCTC
Statistics
Matches: 382, Mismatches: 58, Indels: 27
0.82 0.12 0.06
Matches are distributed among these distances:
316 28 0.07
317 190 0.50
318 162 0.42
319 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (315 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGGTGCGGGCGCTCACC
AGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTG
TTACCCCAACCATCAGTCCGATCCACTCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACC
AATAAAACGAACGTACGAGCGCTCAGCAGACCGGAGAGGCATAATGCGCAAACCGAGGATCGACC
CGGTCCCCCTCTGCGTACTACCGATCCCACTACAACAACCCTCCATCCGACTAGG
Found at i:22112100 original size:158 final size:158
Alignment explanation
Indices: 22111304--22112115 Score: 619
Period size: 159 Copynumber: 5.1 Consensus size: 158
22111294 ACTTCGTATG
* *
22111304 CTTAGACAT-GGAATGAACTCTGC-ATGCCTAAGCCAACCCATGAAACGAGG-GTGCGGGCACTC
1 CTTAGACATGGGAATGAACTC-CCTATGCCTAAGCCAACCCATGAAA--AGGCGTGCGGGCGCTC
* * *
22111366 ACCCAGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCCTGCGTGCTATCGAT
63 AGCCAGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGAT
** * * * **
22111431 CCTGCTACCGTAACCATC-AGTCCGATCCACT
128 CCTGCTACCACAACCCTCGA-TCCGGTTCGGT
* * * * * * *
22111462 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCTATGAAACGAGCTTACGGGCGCTGAG
1 CTTAGACATGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAG-GCGTGCGGGCGCTCAG
* * * * * * ** *
22111526 -CAGACCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTTCCCCTCTGCGTGCTACCGGT
65 CCAG-TCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGG-TCCCCCCTGCGTGCTGTCGAT
** * * * ** * *
22111590 CCCACTACAACAACCTTCCATCCGACTAGGG
128 CCTGCTACCACAACCCTCGATCCGGTTCGGT
* * * * *
22111621 CTTAGACAT-GGAATGAACTCCCTATGCATAAGCCAAACCATGAAACGGGTGTGCGGGCGCTCAA
1 CTTAGACATGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-AGGCGTGCGGGCGCTCAG
* * *
22111685 CC-GATCGGAGAGGCAGAATGCGCAAG-TCGGGGATCGACCCGGTGCCCCTCTGCGTGTTGTCGA
65 CCAG-TCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGGCCCGGT-CCCCCCTGCGTGCTGTCGA
* * * * * * *
22111748 TCCTGTTGCCCCAACCCTCGGTCTGGTCCGAT
127 TCCTGCTACCACAACCCTCGATCCGGTTCGGT
* * * * * * *
22111780 CTTAGAC-TAGGAATGAACTTCGTATGCCTAAGTCAACCAAT-AAAACGAACGTGCGAGCGCTCA
1 CTTAGACATGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAA-G-GCGTGCGGGCGCTCA
* * * * * * * *
22111843 GTC-GGCGGAAGAGGCATAATGCGCAAACCGGGGATCAGCCCGGTCCCCCTCTGCGTACTGCCGA
64 GCCAGTCGG-AGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGA
* * *
22111907 TCCTGCTACCACAACCCTCGGT-CGGTTGGGG
127 TCCTGCTACCACAACCCTCGATCCGGTTCGGT
* *
22111938 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAGGCGTGCAGGCGCTCGG
1 CTTAGACATGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-AGGCGTGCGGGCGCTCAG
* * * * *
22112002 CCAGTCGGAGAGGTAGAATGCGTAAGCTGGGGATCGGCCCAGTCCCCCCTGCATGCTGTTGATCC
65 CCAGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* *** * *
22112067 TGTTACGGTAACCCTCGATCCGGTTTGTT
130 TGCTACCACAACCCTCGATCCGGTTCGGT
*
22112096 CTTAGA-TTGGGAATGAACTC
1 CTTAGACATGGGAATGAACTC
22112116 TGTATGCTTA
Statistics
Matches: 506, Mismatches: 124, Indels: 48
0.75 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 33 0.07
158 202 0.40
159 265 0.52
160 5 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGCGTGCGGGCGCTCAGC
CAGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTACCACAACCCTCGATCCGGTTCGGT
Found at i:22113371 original size:159 final size:158
Alignment explanation
Indices: 22113016--22113417 Score: 393
Period size: 159 Copynumber: 2.5 Consensus size: 158
22113006 AACTCTGTAT
* * * *
22113016 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAA
* * *
22113081 CCGGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCACCTGCATACTGTCAATCT
66 CCGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCAACCCGATCCCACCTGCATACTGTCAATCT
* * *
22113146 TGCTACCGCAACCCTTGATCCAATCCAA
131 CGCTACCACAACCCTCGATCCAATCCAA
* * ** * * *
22113174 TCTTAGAC-TAGGAATAAACTTTGTATGCCTAAGTCAACCTATGAAACGAGCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCA
** * * * *
22113238 ACCGG-TTGAAGAGGCATAATGCGCAAGCCGAGGATCAACCC-AGTCCCCCTCTGCATGCTGTCG
65 ACCGGCCAG-AGAGGCAGAATGCGCAAGCCGAGGATCAACCCGA-TCCCAC-CTGCATACTGTCA
* * * * *
22113301 GTCTCGCTGCCACAACCCTCGGTCCGA--CAGCG
127 ATCTCGCTACCACAACCCTCGATCCAATCCA--A
* * * *
22113333 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCATACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGCAGGCGCTCA
* *
22113397 ATCGGCCGGAGAGGCAGAATG
65 ACCGGCCAGAGAGGCAGAATG
22113418 AGTAAGCTAG
Statistics
Matches: 192, Mismatches: 43, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
157 5 0.03
158 90 0.47
159 95 0.49
160 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.25, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAA
CCGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCAACCCGATCCCACCTGCATACTGTCAATCT
CGCTACCACAACCCTCGATCCAATCCAA
Found at i:22113528 original size:26 final size:26
Alignment explanation
Indices: 22113492--22113544 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22113482 CCTGTCTGAT
22113492 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
22113518 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
22113544 C
1 C
22113545 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22114425 original size:881 final size:867
Alignment explanation
Indices: 22112627--22115342 Score: 3035
Period size: 881 Copynumber: 3.1 Consensus size: 867
22112617 GCTCAAAATA
* * *
22112627 TTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATG-ACTCCGTATACCTAAGCCAACCC
1 TTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * *
22112690 ACGAAACGAGTGTGCGGTCCCTCA---GTC---GGTCG-GAGAGGCAGAATGTGCAAGCC-AGGG
65 ACGAAACGAGTGTGCGGGCACTCAGCGGTCGAAGGTCGCGAGAGGCATAATGCGCAAGCCGA-GG
* * * * * * *
22112747 ATCAACCCGGTCCCCCTCTGCGTGTTGCCAATTCTACTATCGGTCCTGCTGCCACAACCCTCGAT
129 ATCAGCCCAGTCCCCCTCTGCGTGCTGCCGA-TCCACTACCGGTCCTGCTGCCACAACCATCGAT
** *
22112812 CCGACTGGGGCTTAGATGTGGAATGAACAT-TGTATGCCTAAGCCAACCCATGAAACGAGCCTAC
193 CCGACTGGGGCTTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAACCCATGAAACGAGCCTAC
* * *
22112876 GGGCGCTCAGCCGATCGAAAAGGCAAAATGCGTAAGCTGGGGATCGACTCGGTCCCCCCTGCGTG
257 GGGCGCTCAGCCGATCGAAAAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCGTG
* *
22112941 CTACCGATCCTGCTGCTGGTCCTACTGTCGCAACCCTCAATCCGATCCGATCTTAGA-TGGGAAT
322 CTGCCGATCCTGCTACTGGTCCTACTGTCGCAACCCTCAATCCGATCCGATCTTAGACTGGGAAT
*
22113005 GAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG
387 GAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG
* * * * * * * *
22113070 CGGGCGTTCAGCCGGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCACCTGCAT
452 CGGGCGCTCAGCCGTCGA-AGAGGTAGAATGCGCAAGCCAGGGATCG-GCCGGTCCCCCCTGCGT
* * * * * ** *
22113135 ACTGTCAATCTTGCTACCGCAACCCTTGATCCAATCCAATCTTAGACTAGGAATAAACTTTGTAT
515 GCTATCGATCTTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACT-GGAATGAACTTTGTAT
* * * * * * *
22113200 GCCTAAGTCAACCTATGAAACGAGCGTGCAGGCGCTGAACCGGTTGAAGAGGCATAATGCGCAAG
579 GCCTAAGTCAACCAATGAAATGAGCGTGCAAGCGCTGAGCCGGTCGGAGAGGCATAATGCGAAAG
* * * * * *
22113265 CCGAGGATCAACCCAGTCCCCCTCTGCATGCTGTCGGTCTCGCTGCCACAACCCTCGGTCCGACA
644 CCGAGGATCGACCC-GTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGGCT
* * * *
22113330 GCGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCATACGGGCGCT
708 GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCT
* * * * * *
22113395 CAATCGGCCGGAGAGGCAGAATGAG-TAAGCTAGGGATCGGCCTGGTCCCCCCTGCGTGCTATCG
773 CAACCGACCGGAGAGGCAG-AT-AGCTAACCGA-GGATCGGCCCGAT-CCCCCTGCGTGCTATCG
*
22113459 ATCCTACTGCCACAACCCTCGGTCCTG-TCTGATC
834 ATCCTACTGCCGCAACCCTCGGTCC-GATCTGATC
*
22113493 TTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAACCCA
1 TTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
* *
22113558 CGAAACGAGTGTGCGAGCACTCAGCCGGTCGAAAAGGTCAGCCAGAGAGGCATAATGCGTAAGCC
66 CGAAACGAGTGTGCGGGCACTCAG-CGGTCG--AAGGTC-G-C-GAGAGGCATAATGCGCAAGCC
* * * *
22113623 GAGGATCAGCCCAGTCCCCCTCTACGTGCTACTGATCCCACTACCGGTCCTGCTACCACAACCAT
125 GAGGATCAGCCCAGTCCCCCTCTGCGTGCTGCCGAT-CCACTACCGGTCCTGCTGCCACAACCAT
* * * * *
22113688 CGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCT
189 CGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCC
* * * * * * * *
22113753 TGCGGGCACTCAGCCGGAT-GAAAAGACAGAATGGGCAAGCCGGGGATCAACCCGGTCACCCCTA
254 TACGGGCGCTCAGCC-GATCGAAAAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTG
* ** * *
22113817 CGTGCTGTCGATCCTGCTACTGGTCCTACTACCGCAATCTTCAATCCGATCCGATCTTAGACTGG
318 CGTGCTGCCGATCCTGCTACTGGTCCTACTGTCGCAACCCTCAATCCGATCCGATCTTAGACTGG
* * *
22113882 GAATGAACTCCATATTCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAG
383 GAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG
* * * * *
22113947 CGTGCGAGCACTCAGTCGATCGAAAAGGTAGAATGCACAAGCCAGGGATCGGCTCGGTCCCCCCT
448 CGTGCGGGCGCTCAGCCG-TCGAAGAGGTAGAATGCGCAAGCCAGGGATCGGC-CGGTCCCCCCT
* * * *
22114012 ACGTGCTATCGATCTTGCTACCGTAACCCTCGGTCCGATCTGATCTTAGACTGTGAATGAACTCT
511 GCGTGCTATCGATCTTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTG-GAATGAACTTT
* * * *
22114077 GTATGCCTAAGTGAACCAATGAAATAAGCGTGCAAGCACTGAGCCGGCCGGAGAGGCATAATGCG
575 GTATGCCTAAGTCAACCAATGAAATGAGCGTGCAAGCGCTGAGCCGGTCGGAGAGGCATAATGCG
* * * * * ** * * *
22114142 AAAGTCGGGGATTGACCCGGCCCCCTTCTACGTGCTACCGGTCCCACTGTCGCAACCCTCGATCC
640 AAAGCCGAGGATCGACCCGTCCCCC-TCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGATCC
* * *
22114207 GGTTGGGGCTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGG
704 GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGG
* * * * *
22114272 TGCACAGCCGACCGGAGAGGTAGACTACGCTAACCGAGGATTGGCCCGATCCCCCTTGCGTGCTA
769 CGCTCAACCGACCGGAGAGGCAGA-TA-GCTAACCGAGGATCGGCCCGATCCCCC-TGCGTGCTA
* * * *
22114337 TCGATCCTGCTGCCGTAACCCACAGTCCGATCTGATC
831 TCGATCCTACTGCCGCAACCCTCGGTCCGATCTGATC
* *
22114374 ATAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCA
1 TTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
* * ** ** * * *
22114439 CAAAACGAGGGTATGGGTGCTCAACTGGCCGGAGAGGCCGATCGGAGAGGCATAATGCGCAAGCC
66 CGAAACGAGTGTGCGGGCACTCAGC-GGTC-GA-AGGTCG--C-GAGAGGCATAATGCGCAAGCC
* * * * * * *
22114504 AGGGGATCAGCCTAGTCCCCCTCTGCATGCTGCCGATCCAGCTACCAGTCCTACTGCCATAACCG
125 -GAGGATCAGCCCAGTCCCCCTCTGCGTGCTGCCGATCCA-CTACCGGTCCTGCTGCCACAACCA
* * **
22114569 TCAATCCGACTGGGG-TTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCACAAAACGAGC
188 TCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGC
* * * * * * * * *
22114633 GTACGGGTGCTCAGTCTG-TCGGAGAGGCAGAATGCGCAAGTTGGGGACCGATCCGATCCCCCCT
253 CTACGGGCGCTCAG-CCGATCGAAAAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCT
** * * ** * *
22114697 GCGTGCTGCCGATCCTATTACTGGTCCTGCTGTCGC-ACCCTCGATGTGATCCAATCTTAGACTA
317 GCGTGCTGCCGATCCTGCTACTGGTCCTACTGTCGCAACCCTCAATCCGATCCGATCTTAGACTG
*
22114761 GGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA
382 GGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
* * * * * *
22114826 GCGTGCGGGTGCTCAGCCGGTAGGAGAGGCAGAATGGGCAAG-CTGGGATCGGCCGGATCCCCCC
447 GCGTGCGGGCGCTCAGCC-GTCGAAGAGGTAGAATGCGCAAGCCAGGGATCGGCCGG-TCCCCCC
* * * * * *
22114890 TGCGTGCTATCGATCATGCTACCGCAACCCTCAATTCGGTCTGATCTTAAACTCAGAATG-ACTT
510 TGCGTGCTATCGATCTTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACT-GGAATGAACTT
* * * * * * ** *
22114954 TCGTAAGCCCAAGTCAACCCACGAAATGAGCGTGCCAGTGCTGAGCCAATCGGAGAGGCATAATA
574 T-GTATGCCTAAGTCAACCAATGAAATGAGCGTGCAAGCGCTGAGCCGGTCGGAGAGGCATAATG
* * * *
22115019 CGTAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCCGTTACCACAACCCTCAAT
638 CGAAAGCCGAGGATCGACCCG-TCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGAT
* * * * *
22115084 TCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCACAAAATGGGCATGCG
702 CCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCG
* * * *
22115149 GGCGCTCAACCGACCGAAGAGGCAGA-ATGCATAAGTCGAAGATCAGCCCGATCCCTCCTGCGTG
767 GGCGCTCAACCGACCGGAGAGGCAGATA-GC-TAA-CCGAGGATCGGCCCGATCCC-CCTGCGTG
*
22115213 CTACCGATCCTACTGCCGCAACCCTCGGTCCGATCTGATC
828 CTATCGATCCTACTGCCGCAACCCTCGGTCCGATCTGATC
* *
22115253 TTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGGCAACCCA
1 TTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
*
22115318 TGAAACGAGTGTGCGGGCACTCAGC
66 CGAAACGAGTGTGCGGGCACTCAGC
22115343 TGACCAGAGA
Statistics
Matches: 1529, Mismatches: 276, Indels: 77
0.81 0.15 0.04
Matches are distributed among these distances:
865 1 0.00
866 37 0.02
867 41 0.03
871 3 0.00
876 4 0.00
877 4 0.00
878 10 0.01
879 379 0.25
880 365 0.24
881 616 0.40
882 69 0.05
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (867 bp):
TTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGTGTGCGGGCACTCAGCGGTCGAAGGTCGCGAGAGGCATAATGCGCAAGCCGAGGAT
CAGCCCAGTCCCCCTCTGCGTGCTGCCGATCCACTACCGGTCCTGCTGCCACAACCATCGATCCG
ACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCCTACGGGC
GCTCAGCCGATCGAAAAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCGTGCTGC
CGATCCTGCTACTGGTCCTACTGTCGCAACCCTCAATCCGATCCGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG
CGCTCAGCCGTCGAAGAGGTAGAATGCGCAAGCCAGGGATCGGCCGGTCCCCCCTGCGTGCTATC
GATCTTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGAATGAACTTTGTATGCCTAAG
TCAACCAATGAAATGAGCGTGCAAGCGCTGAGCCGGTCGGAGAGGCATAATGCGAAAGCCGAGGA
TCGACCCGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGGCTGGGGCTTA
GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAACCGAC
CGGAGAGGCAGATAGCTAACCGAGGATCGGCCCGATCCCCCTGCGTGCTATCGATCCTACTGCCG
CAACCCTCGGTCCGATCTGATC
Found at i:22114790 original size:26 final size:26
Alignment explanation
Indices: 22114752--22114804 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22114742 GTGATCCAAT
22114752 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22114778 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
22114804 C
1 C
22114805 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22115131 original size:159 final size:157
Alignment explanation
Indices: 22114777--22115140 Score: 374
Period size: 157 Copynumber: 2.3 Consensus size: 157
22114767 AACTCCGTAT
* * **
22114777 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCCAGTGCTCAG
** ** * * * *
22114842 CCGGTAGGAGAGGCAGAATGGGCAAGCTGGGATCGGCCGGATCCCCCCTGCGTGCTATCGATCAT
66 CCAATAGGAGAGGCAGAATACGCAAGCCGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCAC
*
22114907 GCTACCGCAACCCTCAATTCGGTCTGA
131 GCTACCACAACCCTCAATTCGGTCTGA
* * * * * * * *
22114934 TCTTAAAC-TCAGAATG-ACTTTCGTAAGCCCAAGTCAACCCACGAAATGAGCGTGCCAGTGCTG
1 GCTTAGACAT-GGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCCAGTGCTC
* * * * *
22114997 AGCCAATCGGAGAGGCATAATACGTAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTCGG
64 AGCCAATAGGAGAGGCAGAATACGCAAGCCG-GGATCGACCCGATCCCCC-CTGCGTGCTATCGA
* * *
22115062 TCCCGTTACCACAACCCTCAATTCGG-CTAGG
127 TCACGCTACCACAACCCTCAATTCGGTCT-GA
* * *
22115093 GCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCACAAAATG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATG
22115141 GGCATGCGGG
Statistics
Matches: 162, Mismatches: 38, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
156 3 0.02
157 69 0.43
158 18 0.11
159 69 0.43
160 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCCAGTGCTCAG
CCAATAGGAGAGGCAGAATACGCAAGCCGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCAC
GCTACCACAACCCTCAATTCGGTCTGA
Found at i:22116024 original size:26 final size:26
Alignment explanation
Indices: 22115973--22116025 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22115963 GGCTCAAAAT
**
22115973 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
22115999 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
22116025 C
1 C
22116026 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:22116527 original size:158 final size:159
Alignment explanation
Indices: 22116156--22116818 Score: 438
Period size: 159 Copynumber: 4.2 Consensus size: 159
22116146 GTCTGGTTCA
* * * *** *
22116156 ATCTTAGATTGGGAATGAACTCCGTATGCATAACTCAACCCATGAAACGAGCGTGCGGGCGCTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCATAAATCAACCCATGAAAAGAGCGTGCGCAAGCTCA
* * * *
22116221 GCCGACCGAAGAGGCATAATGCGTAAGCCGGGGATCGGCCTGGTCCCTCTCTGCGTGCTGCCAGT
66 GCCGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCGACCTGGTCCCTCCCTGCGTGCTGCCAAT
22116286 CCCGCTGCCACAACCCTCAGTCCAGCTGG
131 CCCGCTGCCACAACCCTCAGTCCAGCTGG
** * * * * *
22116315 GGCTTAGACAT-GGAATGAACTCCCTATGCCTAAACCAACCCATGAAATGGGCGTGCGCAAGCTC
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCATAAATCAACCCATGAAAAGAGCGTGCGCAAGCTC
* * * *
22116379 AGCCGACTGGAGAGGTAGAATGCGTAAGCTGGGGATCGACCTGGTCCC-CCCTGCGTGCTGCCAA
65 AGCCGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCGACCTGGTCCCTCCCTGCGTGCTGCCAA
* * * *
22116443 TCCTGCTGCCGCAACCCT-TGATCCGGTCT-G
130 TCCCGCTGCCACAACCCTCAG-TCCAG-CTGG
* * ** *** * *
22116473 ATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACAAAAAGAGCGTGCGGGCGTTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCATAAATCAACCCATGAAAAGAGCGTGCGCAAGCTCA
* ** * * **
22116538 GCCGGCCGAAGAGGCTTAATGCGTAAGGCAGGGATC-AGCCCAGTCCC-CCTCTG-GATGCTGCC
66 GCCGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCGA-CCTGGTCCCTCC-CTGCG-TGCTGCC
** * * * *
22116600 GGTCCCGCTTCCACAAGCCTCGGTCCAGTTGG
128 AATCCCGCTGCCACAACCCTCAGTCCAGCTGG
** * * * * ** *
22116632 GGCTTAGA-TATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACGAGCGTGCGGGC-A-C
1 ATCTTAGACT-GGGAATGAACTCCGTATGCATAAATCAACCCATGAAAAGAGCGTGC--GCAAGC
* ** * * * * * * *
22116694 TCAGTCGGTC-AGAGACGCAGAATGCGCAAGCTGGGAATC-AGCCCGGTCCC-CCCTGCATGCTA
63 TCAGCCGACCGA-AGAGGCAGAATGCGTAAGCCGGGGATCGA-CCTGGTCCCTCCCTGCGTGCTG
* * ** * *
22116756 TCGATCCTACTGCCGA-AACCCTCGGTCCGATCT-G
126 CCAATCCCGCTGCC-ACAACCCTCAGTCC-AGCTGG
*
22116790 ATCTTAGACTGGGAATGAACTCCATATGC
1 ATCTTAGACTGGGAATGAACTCCGTATGC
22116819 TTAGATGTGG
Statistics
Matches: 385, Mismatches: 102, Indels: 35
0.74 0.20 0.07
Matches are distributed among these distances:
157 3 0.01
158 172 0.45
159 207 0.54
160 2 0.01
161 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCATAAATCAACCCATGAAAAGAGCGTGCGCAAGCTCA
GCCGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCGACCTGGTCCCTCCCTGCGTGCTGCCAAT
CCCGCTGCCACAACCCTCAGTCCAGCTGG
Found at i:22116599 original size:317 final size:316
Alignment explanation
Indices: 22115998--22116818 Score: 981
Period size: 317 Copynumber: 2.6 Consensus size: 316
22115988 AACTCTGTAT
* *
22115998 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATGAAATGACCGTGCTGGC-GCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGC-GGCAGCTCA
* * ** * * * * *
22116062 GTCGGCTGGAGAGGTAGAATACGTAAACCAGGGATTGGCCCAGTCCCCCCCTACGTGCTGTTGAT
65 GTC-GCTGGAGAGGTAGAATGCGTAAGCTGGGGATCGACCCGGT-CCCCCCTGCGTGCTGTCGAT
* * * *
22116127 CCTGCTGCCACAA-CCTTCGGTCTGGT-TCAATCTTAGATTGGGAATGAACTCCGTATGCATAAC
128 CCTGCTGCCGCAACCCTT-GGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCATAAC
** * *
22116190 TCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGCGTAAGCCGGGGA
191 TCAACCCACAAAAAGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGCGTAAGCCAGGGA
* ** *
22116255 TCGGCCTGGTCCCTCTCTGCGTGCTGCCAGTCCCGCTGCCACAACCCTCAGTCCAGCTGGG
256 TCAGCCCAGTCCCCCTCTGCGTGCTGCCAGTCCCGCTGCCACAACCCTCAGTCCAGCTGGG
* *
22116316 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAATGGGCGTGC-GCAAGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGC-AGCTCA
* * * *
22116380 GCCGACTGGAGAGGTAGAATGCGTAAGCTGGGGATCGACCTGGTCCCCCCTGCGTGCTGCCAATC
65 GTCG-CTGGAGAGGTAGAATGCGTAAGCTGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATC
* * *
22116445 CTGCTGCCGCAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCA
129 CTGCTGCCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAACTCA
* * * *
22116510 ACCCACAAAAAGAGCGTGCGGGCGTTGAGCCGGCCGAAGAGGCTTAATGCGTAAGGCAGGGATCA
194 ACCCACAAAAAGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGCGTAAGCCAGGGATCA
* * * * *
22116575 GCCCAGTCCCCCTCTG-GATGCTGCCGGTCCCGCTTCCACAAGCCTCGGTCCAGTTGGG
259 GCCCAGTCCCCCTCTGCG-TGCTGCCAGTCCCGCTGCCACAACCCTCAGTCCAGCTGGG
* * *
22116633 GCTTAGATATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACGAGCGTGCGGGCA-CTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGC-GGCAGCTCA
* * * * * * * *
22116697 GTCGGTCAGAGACGCAGAATGCGCAAGCTGGGAATC-AGCCCGGTCCCCCCTGCATGCTATCGAT
65 GTCGCT-GGAGAGGTAGAATGCGTAAGCTGGGGATCGA-CCCGGTCCCCCCTGCGTGCTGTCGAT
* * * * *
22116761 CCTACTGCCGAAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGC
128 CCTGCTGCCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
22116819 TTAGATGTGG
Statistics
Matches: 428, Mismatches: 65, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
316 5 0.01
317 326 0.76
318 95 0.22
319 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGCAGCTCAG
TCGCTGGAGAGGTAGAATGCGTAAGCTGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAACTCAAC
CCACAAAAAGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGCGTAAGCCAGGGATCAGC
CCAGTCCCCCTCTGCGTGCTGCCAGTCCCGCTGCCACAACCCTCAGTCCAGCTGGG
Found at i:22116718 original size:159 final size:154
Alignment explanation
Indices: 22115998--22116748 Score: 522
Period size: 159 Copynumber: 4.7 Consensus size: 154
22115988 AACTCTGTAT
* * * * *
22115998 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATGAAATGACCGTGCTGGCGCTCAG
1 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * ** * * ***
22116063 TCGGCTGGAGAGGTAGAATACGTAAACCAGGGATTGGCCCAGTCCCCCCCTACGTGCTGTTGATC
66 -CGGC-CGAGAGGCAGAATGCGT-AAGCAGGGATCAGCCCGGT-CCCCCCT-GGTGCTGCCAATC
* * ** **
22116128 CTGCTGCCACAACCTTCGGTCTGGTTCAA
126 CCGCTGCCACAACCCTCGGTCCAGTTGGA
* * * *
22116157 TCTTAGAT-TGGGAATGAACTCCGTATGCATAA-CTCAACCCATGAAACGAGCGTGCGGGCGCTG
1 GCTTAGATAT-GGAATGAACTCCCTATGCCTAAGC-CAACCCATGAAACGAGCGTGCGGGCGCTC
* * * * * * *
22116220 AGCCGACCGAAGAGGCATAATGCGTAAGCCGGGGATCGGCCTGGTCCCTCTCTGCGTGCTGCCAG
64 AG-CGGCCG-AGAGGCAGAATGCGTAAG-CAGGGATCAGCCCGGTCCC-CCCTG-GTGCTGCCAA
* * *
22116285 TCCCGCTGCCACAACCCTCAGTCCAGCTGGG
124 TCCCGCTGCCACAACCCTCGGTCCAGTTGGA
* * * * ***
22116316 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAATGGGCGTGCGCAAGCTCAG
1 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
22116381 CCGACTGGAGAGGTAGAATGCGTAAGCTGGGGATC-GACCTGGTCCCCCCTGCGTGCTGCCAATC
66 -CGGC-CGAGAGGCAGAATGCGTAAGC-AGGGATCAG-CCCGGTCCCCCCTG-GTGCTGCCAATC
* * * * *
22116445 CTGCTGCCGCAACCCTTGATCCGGTCT-GA
126 CCGCTGCCACAACCCTCGGTCCAGT-TGGA
* * ** * * ** * * *
22116474 TCTTAGACT-GGGAATGAACTCTGTATGCATAAGTCAACCCACAAAAAGAGCGTGCGGGCGTTGA
1 GCTTAGA-TATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
** * **
22116538 GCCGGCCGAAGAGGCTTAATGCGTAAGGCAGGGATCAGCCCAGTCCCCCTCTGGATGCTGCCGGT
65 G-CGGCCG-AGAGGCAGAATGCGTAA-GCAGGGATCAGCCCGGTCCCCC-CTGG-TGCTGCCAAT
* * *
22116603 CCCGCTTCCACAAGCCTCGGTCCAGTTGGG
125 CCCGCTGCCACAACCCTCGGTCCAGTTGGA
* *
22116633 GCTTAGATATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
22116698 TCGGTCAGAGACGCAGAATGCGCAAGCTGGGAATCAGCCCGGTCCCCCCTG
66 -CGG-CCGAGAGGCAGAATGCGTAAGCAGGG-ATCAGCCCGGTCCCCCCTG
22116749 CATGCTATCG
Statistics
Matches: 456, Mismatches: 114, Indels: 45
0.74 0.19 0.07
Matches are distributed among these distances:
157 1 0.00
158 136 0.30
159 314 0.69
160 5 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (154 bp):
GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CGGCCGAGAGGCAGAATGCGTAAGCAGGGATCAGCCCGGTCCCCCCTGGTGCTGCCAATCCCGCT
GCCACAACCCTCGGTCCAGTTGGA
Found at i:22116994 original size:185 final size:184
Alignment explanation
Indices: 22116633--22117003 Score: 478
Period size: 184 Copynumber: 2.0 Consensus size: 184
22116623 TCCAGTTGGG
* ** *
22116633 GCTTAGATATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGATATGGAATGAACTCCCTATACATAAGCCAACCCACAAAACGAGCGTGCGAGCACTCAG
* *
22116698 TCGGTCAGAGACGCAGAATGCGCAAGCTGGGAATCAGCCCGGTCCCCCCTGCATGCTATCGATCC
66 CCGGTCAGAGACGCAGAATGCGCAAGCTGGGAATCAGCCCGGTCCCCACTGCATGCTATCGATCC
*
22116763 TACTGCCGAAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATAT
131 TACTACCGAAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATAT
* ** * * * *
22116817 GCTTAGATGTGGAATGAACTCTGTATGCATAAGTCAACCCACAAAATGAGCGTGCGAGCGCTCAG
1 GCTTAGATATGGAATGAACTCCCTATACATAAGCCAACCCACAAAACGAGCGTGCGAGCACTCAG
* * * *
22116882 CCGGTC-GAGGAGGCAGAATGCGCAAGCTAGGG-ATCGGCCTGGTGCCCCACTGCATGCTGTCGA
66 CCGGTCAGA-GACGCAGAATGCGCAAGCT-GGGAATCAGCCCGGT-CCCCACTGCATGCTATCGA
* * * * *
22116945 TCCTACTACTGCAACCCTCGGTCCAGTTC-GATCTTAGACTGGTAATGAACTCCGTAT
128 TCCTACTACCGAAACCCTCGGTCC-GATCTGATCTTAGACTGGGAATGAACTCCATAT
22117002 GC
1 GC
22117004 CTAAGTCAAC
Statistics
Matches: 160, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
183 2 0.01
184 86 0.54
185 69 0.43
186 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGATATGGAATGAACTCCCTATACATAAGCCAACCCACAAAACGAGCGTGCGAGCACTCAG
CCGGTCAGAGACGCAGAATGCGCAAGCTGGGAATCAGCCCGGTCCCCACTGCATGCTATCGATCC
TACTACCGAAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATAT
Found at i:22117324 original size:26 final size:26
Alignment explanation
Indices: 22117295--22117347 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22117285 CCGATCCGAT
*
22117295 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCATATG
*
22117321 CTTAGACTGAGGATTAACTCCATATG
1 CTTAGACTGAGGATGAACTCCATATG
22117347 C
1 C
22117348 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCATATG
Found at i:22117447 original size:503 final size:502
Alignment explanation
Indices: 22116472--22117450 Score: 1181
Period size: 503 Copynumber: 1.9 Consensus size: 502
22116462 GATCCGGTCT
* ***
22116472 GATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACAAAAAGAGCGTGCGGGCGTTG
1 GATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAAAGAGCGTGCGGGAAATG
* * * *
22116537 AGCCGGCCGAAGAGGCTTAATGCGTAAGGCAGGGATCAGCCCAGTCCCCCTCTGGATGCTGCCGG
66 AACCGGCCGAAGAGGCATAATGCGTAAGGCAGGGATCAGCCCAGTCCCACTCTGGATGCTGCCGA
* * * * *
22116602 TCCCGCTTCCACAAGCCTCGGTCCAGTTGGGGCTTAGATATGGAATGAACTCCCTATACCTAAGC
131 TCCCGCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGC
* * * **
22116667 CAACCCATGAAACGAGCGTGCGGGCACTCAGTCGGTCAGAGACGCAGAATGCGCAAGCTGGGAAT
196 CAACCCACGAAACGAGCGTACGGGCACTCAGTCGATCAGAGACGCAGAATGCGCAAGCAAGGAAT
* * *
22116732 CAGCCCGGTCCCCCCTGCATGCTATCGATCCTACTGCCGAAACCCTCGGTCCGATCTGATCTTAG
261 CAGCCCGGTCCCCCCTGCATACTATCGATCCTACTGCCGAAACCCTCGATCCGATCCGATCTTAG
* **
22116797 ACTGGGAATGAACTCCATATGCTTAGATGTGGAATGAACTCTGTATGCATAAGTCAACCCACAAA
326 ACTGGGAATGAACTCCATATGCTTAGATGAGGAATGAACTCCATATGCATAAGTCAACCCACAAA
* * * * * *
22116862 ATGAGCGTGCGAGCGCTCAGCCGGTCGAGGAGGCAGAATGCGCAAGCTAGGGATCGGCCTGGTGC
391 ACGAGCGTGCGAGCACTCAGCCGGTCGAGGAGGCAGAATGAGCAAGCTAGGGATCAGCCCGGTCC
22116927 CCCACTGCATGCTGTCGATCCTACTACTGCAACCCTCGGTCCAGTTC
456 CCCACTGCATGCTGTCGATCCTACTACTGCAACCCTCGGTCCAGTTC
* * * * *
22116974 GATCTTAGACTGGTAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGAAATG
1 GATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAAAGAGCGTGCGGGAAATG
* * * * * *
22117039 AACGGGCGGGAA-AGGCATAATGCG-CAGGCCGGGGATC-GACCCGGTCCCACTTTGCG-TGCTG
66 AACCGGC-CGAAGAGGCATAATGCGTAAGG-CAGGGATCAG-CCCAGTCCCACTCTG-GATGCTG
** *
22117100 CCGATCCCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
127 CCGATCCCGCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATACCT
* * *
22117165 AAGCCAACCCACGAAACG-GACGTACGGGCTGCTCAGTCGATCAGAGAGGCAGAGTGCGCAAGCC
192 AAGCCAACCCACGAAACGAG-CGTACGGGC-ACTCAGTCGATCAGAGACGCAGAATGCGCAAG-C
* ** * * *
22117229 AAGG-ATC-GACCCGGTCCCTCCTGTGTACTGTCGATCCTGCT-CCTGCAACCCTCGATCCGATC
254 AAGGAATCAG-CCCGGTCCCCCCTGCATACTATCGATCCTACTGCC-GAAACCCTCGATCCGATC
* * *
22117291 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGG-ATTAACTCCATATGCCTAAGTC
317 CGATCTTAGACTGGGAATGAACTCCATATGCTTAGA-TGAGGAATGAACTCCATATGCATAAGTC
* * * * * * *
22117355 AACTCACAGAACGAGCGTGTGGGCACTCAGCTGGTCG-GAGAGGCATAATGAGCAAG-TCGGGGA
381 AACCCACAAAACGAGCGTGCGAGCACTCAGCCGGTCGAG-GAGGCAGAATGAGCAAGCT-AGGGA
*
22117418 TCAGCCCGGTCCCCCTA-TGCGTGCTGTCGATCC
444 TCAGCCCGGTCCCCC-ACTGCATGCTGTCGATCC
22117451 CGCTGCCGGT
Statistics
Matches: 400, Mismatches: 64, Indels: 25
0.82 0.13 0.05
Matches are distributed among these distances:
501 5 0.01
502 182 0.46
503 205 0.51
504 8 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (502 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAAAGAGCGTGCGGGAAATG
AACCGGCCGAAGAGGCATAATGCGTAAGGCAGGGATCAGCCCAGTCCCACTCTGGATGCTGCCGA
TCCCGCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGC
CAACCCACGAAACGAGCGTACGGGCACTCAGTCGATCAGAGACGCAGAATGCGCAAGCAAGGAAT
CAGCCCGGTCCCCCCTGCATACTATCGATCCTACTGCCGAAACCCTCGATCCGATCCGATCTTAG
ACTGGGAATGAACTCCATATGCTTAGATGAGGAATGAACTCCATATGCATAAGTCAACCCACAAA
ACGAGCGTGCGAGCACTCAGCCGGTCGAGGAGGCAGAATGAGCAAGCTAGGGATCAGCCCGGTCC
CCCACTGCATGCTGTCGATCCTACTACTGCAACCCTCGGTCCAGTTC
Found at i:22117717 original size:170 final size:165
Alignment explanation
Indices: 22117321--22117873 Score: 504
Period size: 170 Copynumber: 3.3 Consensus size: 165
22117311 ACTCCGTATG
* * * * * *
22117321 CTTAGACTGAGG-ATTAACTCCATATGCCTAAGTCAACTCACAGAACGAGCGTGTGGGCACTCAG
1 CTTAGACT-AGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * *
22117385 CTGGTCGGAGAGGCATAATGAGCAAGTCGGGGATCAGCCCGGTCCCCCTATGCGTGCTGTCGATC
65 CTGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATTAG-CCGGTCCCCCTAT--GTGCT-TCGATC
* * * * * * * **
22117450 CCGCTGCCGGTCCTACTACCACAACCTTCGGTCCGGCTGGGG
126 CTG-TGCTGGTCCTGCTACCACAACCCTCGATCCGTC-CGAT
* * * * *
22117492 CTTAAAC-ATGGAATGAACTCCGTATGCCTAAGCCACCCCACGAAATGAGCGTGCGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
22117556 CTGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATTAGCTCGGTCCCTCCTATGTGCTATCGATCC
65 CTGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATTAGC-CGGTCCC-CCTATGTGCT-TCGATCC
22117621 TGTTGCTGGTCCTGCTACCACAACCCTCGATCCGATCCGAT
127 TG-TGCTGGTCCTGCTACCACAACCCTCGATCCG-TCCGAT
* *
22117662 CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAACGTGCGGACGCTCAGC
1 CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * * *
22117727 -CGCCTAGAGAGGCAGAATGCGCATGTCGAGGATTGGCCTGGTCCCCCCTA----CTT-G---CT
66 TGGCC-GGAGAGGCAGAATGCGCAAGTCGGGGATTAGCC-GGT-CCCCCTATGTGCTTCGATCCT
* *
22117783 GT--TGATCCTGCTACCACAACCCTC-AGTCCGGTCTGAT
128 GTGCTGGTCCTGCTACCACAACCCTCGA-TCC-GTCCGAT
* * * * *
22117820 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAACTACAAAATGAGCGTGC
1 CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGC
22117874 AGGTGCTGAG
Statistics
Matches: 325, Mismatches: 46, Indels: 35
0.80 0.11 0.09
Matches are distributed among these distances:
157 1 0.00
158 77 0.24
159 1 0.00
160 1 0.00
161 3 0.01
164 1 0.00
165 1 0.00
166 2 0.01
169 5 0.02
170 135 0.42
171 93 0.29
172 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (165 bp):
CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
TGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATTAGCCGGTCCCCCTATGTGCTTCGATCCTGTG
CTGGTCCTGCTACCACAACCCTCGATCCGTCCGAT
Found at i:22117932 original size:158 final size:157
Alignment explanation
Indices: 22117630--22118155 Score: 373
Period size: 158 Copynumber: 3.3 Consensus size: 157
22117620 CTGTTGCTGG
*
22117630 TCCTGCTACCACAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGC
1 TCCTGCTACCACAACCCTCG-TCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGC
* * * * *
22117695 CAACCCACAAAACGAACGTGCGGACGCTCAGCCGCCTAGAGAGGCAGAATGCGCATGTCGAGGAT
65 CAAACCACAAAACGAACGTGCGGACGCTCAGCAGCCTAGAGAGGCAGAATGCGCAAGCCAAGGAT
** *** **
22117760 TGGCCTGGTCCCCCCTACT-TGCTGTTGA
130 CAGCCCAATCCCCCCT-CTGTGCTGCCGA
* * *
22117788 TCCTGCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGT
1 TCCTGCTACCACAACCCTC-GTCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGC
* * * * * * * *
22117853 CAAACTACAAAATGAGCGTGCAGG-TGCTGAGTCAGTCT-GAGAGGCATAATGCGTAAGCCAAGG
65 CAAACCACAAAACGAACGTGC-GGACGCTCAG-CAGCCTAGAGAGGCAGAATGCGCAAGCCAAGG
*
22117916 TATCAGCCCAAT-CCCCCTCTGCGTGCTGCCGG
128 -ATCAGCCCAATCCCCCCTCT--GTGCTGCCGA
** ** * * * *
22117948 TCCTGCTACCACAACCCTCGGTCCGGTTGGGGCTTAGACAAGGAATGAATTCCCTATGCCAAAGC
1 TCCTGCTACCACAACCCTC-GTCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGC
* * ** * * * * * ** * *
22118013 CAACCCACGAAACGGGCGTGCGGGCACTCAGCCG-GTCGGAGAGATAGAATGTGCAAGCCAGGGA
65 CAAACCACAAAACGAACGTGCGGACGCTCAGCAGCCT-AGAGAGGCAGAATGCGCAAGCCAAGGA
* * ** * *
22118077 CCGGCCC-GGCCCCCCTGC-ATGCTGTCGA
129 TCAGCCCAATCCCCCCT-CTGTGCTGCCGA
* ** * * *
22118105 TCCTACTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT
1 TCCTGCTACCACAACCCTC-GTCCGGTCCGATCTTAGACTAGGAATGAACT
22118156 TCGCATCCTT
Statistics
Matches: 285, Mismatches: 71, Indels: 25
0.75 0.19 0.07
Matches are distributed among these distances:
157 48 0.17
158 108 0.38
159 29 0.10
160 100 0.35
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (157 bp):
TCCTGCTACCACAACCCTCGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCC
AAACCACAAAACGAACGTGCGGACGCTCAGCAGCCTAGAGAGGCAGAATGCGCAAGCCAAGGATC
AGCCCAATCCCCCCTCTGTGCTGCCGA
Found at i:22118396 original size:843 final size:839
Alignment explanation
Indices: 22116827--22118431 Score: 1878
Period size: 843 Copynumber: 1.9 Consensus size: 839
22116817 GCTTAGATGT
** * * * * *
22116827 GGAATGAACTCTGTATGCATAAGTCAACCCACAAAATGAGCGTGCGAGCGCTCAGCCGGTCGAGG
1 GGAATGAACTCCATATGCATAAGCCAACCCACAAAACGAACGTGCGAGCGCTCAGCCGCTAGAGG
* * **
22116892 AGGCAGAATGCGCAAGCTAGGGATCGGCCTGGTGCCCCACTGCATGCTGTCGATCCTACTACTGC
66 AGGCAGAATGCGCAAGCGAGGGATCGGCCTGGTGCCCCACTACATGCTGTCGATCCTACTACCAC
* * * * *
22116957 AACCCTCGGTCCAGTTCGATCTTAGACTGGTAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
131 AACCCTCAGTCCAGTTCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAACCACAAAA
** * * * **
22117022 TGAGCGTGTGGGAAATGAACGGGCGGGAAAGGCATAATGCGCAGGCCGGGGATCGACCCGGTCCC
196 TGAGCGTGCAGGAAATGAACAGGCGGGAAAGGCATAATGCGCAAGCCAGGGATCGACCCAATCCC
* * * *
22117087 ACTTTGCGTGCTGCCGATCCCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGA
261 ACTCTGCGTGCTGCCGATCCCGCTACCACAACCCTCGATCCGGCTGGGGCTTAGACAAGGAATGA
* * * *
22117152 ACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTACGGGCTGCTCAGTCGATCAGAGAGGCAG
326 ACTCCCTATGCCAAAGCCAACCCACGAAACGGACGTACGGGCTACTCAGCCGATCAGAGAGACAG
* * * ** *
22117217 AGTGCGCAAGCCAAGGATCGACCCGGTCCCTCCTGTGTACTGTCGATCCTGCTCCTGCAACCCTC
391 AATGCGCAAGCCAAGGACCGACCCGGTCCCCCCTGCATACTGTCGATCCTACTCCTGCAACCCTC
* * * *
22117282 GATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGGATTAACTCCATATG
456 GATCCGATCCGATCTTAGACTGGGAATGAACTCCGCATCCTTAGACTGAGGATGAACTCCATACG
* * *
22117347 CCTAAGTCAACTCACAGAACGAGCGTGTGGGCACTCAGCTGGTCGGAGAGGCATAATGAGCAAGT
521 CCTAAGTCAACCCACAGAACGAGCGTGCGGGCACTCAGCTGGTCGAAGAGGCATAATGAGCAAGT
* *
22117412 CGGGGATCAGCCCGGTCCCCCTATGCGTGCTGTCGATCCCGCTGCCGGTCCTACTACCACAACCT
586 CGGGGATCAGCCCGATCCCCCTATGCGTGCTGCCGATCCCGCT--C-G-CC-ACTACCACAACCT
* * * * *
22117477 TCGGTCCGGCTGGGGCTTAAACATGGAATGAACTCCGTATGCCTAAGCCACCCCACGAAATGAGC
646 TCGGTCCGACTGGGGCTTAAACATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGC
* * * *
22117542 GTGCGGGCGCTCAG-CTGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATTAGCTCGGTCCCTCCT
711 GTGCAGGCGCTCAGTC-GACCGGAGAGGCAAAATGCACAAGTCGGGGATTAGCTCGGTCCCTCCT
22117606 ATGTGCTATCGATCCTGTTGCTGGTCCTGCTACCACAACCCTCGATCCGATCCGATCTTAGACTA
775 ATGTGCTATCGATCCTGTTGCTGGTCCTGCTACCACAACCCTCGATCCGATCCGATCTTAGACTA
*
22117671 GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAACGTGCG-GACGCTCAGCCGCCTAGA
1 GGAATGAACTCCATATGCATAAGCCAACCCACAAAACGAACGTGCGAG-CGCTCAGCCG-CTAGA
* * * * * *
22117735 -GAGGCAGAATGCGCATGTCGA-GGATTGGCCTGGT-CCCCCCTACTTGCTGTTGATCCTGCTAC
64 GGAGGCAGAATGCGCAAG-CGAGGGATCGGCCTGGTGCCCCACTACATGCTGTCGATCCTACTAC
* *
22117797 CACAACCCTCAGTCC-GGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAACTAC
128 CACAACCCTCAGTCCAGTTC-GATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAACCAC
*** * * * * * *
22117861 AAAATGAGCGTGCAGGTGCTGAGTCAGTC-TGAGAGGCATAATGCGTAAGCCAAGGTATC-AGCC
192 AAAATGAGCGTGCAGGAAATGA-ACAGGCGGGAAAGGCATAATGCGCAAGCC-AGGGATCGA-CC
* * * * *
22117924 CAATCCCCCTCTGCGTGCTGCCGGTCCTGCTACCACAACCCTCGGTCCGGTTGGGGCTTAGACAA
254 CAATCCCACTCTGCGTGCTGCCGATCCCGCTACCACAACCCTCGATCCGGCTGGGGCTTAGACAA
* * * * *
22117989 GGAATGAATTCCCTATGCCAAAGCCAACCCACGAAACGGGCGTGCGGGC-ACTCAGCCGGTCGGA
319 GGAATGAACTCCCTATGCCAAAGCCAACCCACGAAACGGACGTACGGGCTACTCAGCCGATCAGA
* * * * * *
22118053 GAGATAGAATGTGCAAGCCAGGGACCGGCCCGG-CCCCCCTGCATGCTGTCGATCCTACT-GTCG
384 GAGACAGAATGCGCAAGCCAAGGACCGACCCGGTCCCCCCTGCATACTGTCGATCCTACTCCT-G
* * * * *
22118116 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGCATCCTTAGACTGGGGATGAAC
448 CAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGCATCCTTAGACTGAGGATGAAC
* ** * *
22118181 TCCGTACGCCTAAGTCAACCCATGGAATGAGCGTGCGGGCGCTCAGCCGACTGGAGAGGCCGATC
513 TCCATACGCCTAAGTCAACCCACAGAACGAGCGTGCGGGCACTCA---G-CT------G--G-TC
* * * *
22118246 GAAGAGGCGTAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCCCGCT-
565 GAAGAGGCATAATGAGCAAGTCGGGGATCAGCCCGATCCCCCTATGCGTGCTGCCGATCCCGCTC
* *
22118310 G-C-C-A-CA-AGCC-TCGGTCCGACTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCC
630 GCCACTACCACAACCTTCGGTCCGACTGGGGCTTAAACATGAAATGAACTCCCTATGCCTAAGCC
* *
22118369 AACCCATGAAACGGGCGTGCAGGCGCTCAGTCGACCGGAGAGGCAAAATGCACAAGTCGGGGA
695 AACCCACGAAACGAGCGTGCAGGCGCTCAGTCGACCGGAGAGGCAAAATGCACAAGTCGGGGA
22118432 CCGGTCCGAT
Statistics
Matches: 632, Mismatches: 107, Indels: 45
0.81 0.14 0.06
Matches are distributed among these distances:
841 1 0.00
842 119 0.19
843 246 0.39
844 191 0.30
845 8 0.01
846 3 0.00
847 1 0.00
849 1 0.00
851 1 0.00
852 1 0.00
854 1 0.00
855 59 0.09
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (839 bp):
GGAATGAACTCCATATGCATAAGCCAACCCACAAAACGAACGTGCGAGCGCTCAGCCGCTAGAGG
AGGCAGAATGCGCAAGCGAGGGATCGGCCTGGTGCCCCACTACATGCTGTCGATCCTACTACCAC
AACCCTCAGTCCAGTTCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAACCACAAAA
TGAGCGTGCAGGAAATGAACAGGCGGGAAAGGCATAATGCGCAAGCCAGGGATCGACCCAATCCC
ACTCTGCGTGCTGCCGATCCCGCTACCACAACCCTCGATCCGGCTGGGGCTTAGACAAGGAATGA
ACTCCCTATGCCAAAGCCAACCCACGAAACGGACGTACGGGCTACTCAGCCGATCAGAGAGACAG
AATGCGCAAGCCAAGGACCGACCCGGTCCCCCCTGCATACTGTCGATCCTACTCCTGCAACCCTC
GATCCGATCCGATCTTAGACTGGGAATGAACTCCGCATCCTTAGACTGAGGATGAACTCCATACG
CCTAAGTCAACCCACAGAACGAGCGTGCGGGCACTCAGCTGGTCGAAGAGGCATAATGAGCAAGT
CGGGGATCAGCCCGATCCCCCTATGCGTGCTGCCGATCCCGCTCGCCACTACCACAACCTTCGGT
CCGACTGGGGCTTAAACATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCA
GGCGCTCAGTCGACCGGAGAGGCAAAATGCACAAGTCGGGGATTAGCTCGGTCCCTCCTATGTGC
TATCGATCCTGTTGCTGGTCCTGCTACCACAACCCTCGATCCGATCCGATCTTAGACTA
Found at i:22119224 original size:26 final size:26
Alignment explanation
Indices: 22119186--22119237 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22119176 GGCTCAAACT
*
22119186 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22119212 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22119238 TCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22120653 original size:26 final size:26
Alignment explanation
Indices: 22120615--22120667 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22120605 GGCTCAAACT
*
22120615 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
22120641 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
22120667 C
1 C
22120668 CTAAGCCAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22121836 original size:26 final size:26
Alignment explanation
Indices: 22121786--22121838 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22121776 CCGATCCGAT
*
22121786 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
22121812 CTTAGACTGGGGATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
22121838 C
1 C
22121839 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:22122442 original size:158 final size:158
Alignment explanation
Indices: 22122135--22122527 Score: 379
Period size: 158 Copynumber: 2.5 Consensus size: 158
22122125 CTACTGTTGG
* *
22122135 TCCTGCTGCCGCAACCCTCGGTTCGGTTCGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGC
1 TCCTGCTGCCGCAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGC
* * * **
22122200 CAACCCATGAAACGAGCATAGGGGTGCTCAGCCAGCCAGAGAGGTAGAATGCGCAAGTTGAGGAC
66 CAACCCATGAAACGAACATAGGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCGAGGAC
* * *
22122265 CGGTCTGGTCCCCCTTACGTGCTCTCGA
131 AGCTCTGATCCCCCTTACGTGCTCTCGA
* *
22122293 TCCTGCTGCTGCAACCCTCGA-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
1 TCCTGCTGCCGCAACCCTCGATTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATCCCTAAG
* * * * * * * *
22122357 TCAACCCATGAAATGAACGT-GCGGGCGCTGAGTC-GACCGGA-AGGCATAATGCGTAAGCCGAG
65 CCAACCCATGAAACGAACATAG-GGGCGCTCAGCCAG-CCAGAGAGGCAGAATGCGCAAGCCGAG
* *
22122419 GATCAGCTC-GATCCCCCTCTACGTGCTGTCGG
128 GA-CAGCTCTGATCCCCCT-TACGTGCTCTCGA
* * * * ** * *
22122451 TCCTGCTACCACAACCCTC-AGTCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATACCTA
1 TCCTGCTGCCGCAACCCTCGA-TTCGGTC-CGATCTTAGAC-TGGGAATGAACTCCGTATCCCTA
*
22122513 AGCCAACCCACGAAA
63 AGCCAACCCATGAAA
22122528 TGGGTGTGCA
Statistics
Matches: 193, Mismatches: 33, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
157 32 0.17
158 159 0.82
159 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.21
Consensus pattern (158 bp):
TCCTGCTGCCGCAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGC
CAACCCATGAAACGAACATAGGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCGAGGAC
AGCTCTGATCCCCCTTACGTGCTCTCGA
Found at i:22127757 original size:26 final size:26
Alignment explanation
Indices: 22127719--22127769 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
22127709 GGCTCAAAAT
22127719 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
22127745 CTTAGACAT-GGAATGAACTCTGTAT
1 CTTAGAC-TGGGAATGAACTCTGTAT
22127770 TCCTAAGCCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:22128114 original size:26 final size:26
Alignment explanation
Indices: 22128063--22128115 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22128053 CCGATCCGAT
*
22128063 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
22128089 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
22128115 C
1 C
22128116 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22128481 original size:26 final size:26
Alignment explanation
Indices: 22128431--22128483 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22128421 TTGGTCTGAT
**
22128431 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22128457 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22128483 C
1 C
22128484 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22128957 original size:158 final size:159
Alignment explanation
Indices: 22128456--22129274 Score: 645
Period size: 159 Copynumber: 5.2 Consensus size: 159
22128446 AACTTTGTAT
* ** * *
22128456 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCATGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCA
* * * * * * * * * *
22128520 ACCGGCCGAAGAGGCAGAATGCATAAGCCGAGGAT-TGCCCGGTCCCCCCTGTGTGATGTCGATC
65 GCTGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATC
** ** ** * * * * *
22128584 CTACTATCGTAACCTTCGGTTCG-ATTCGA
130 CCGCTGCCACAACCCTCGGTCCGAACTGGG
* ** * ** * ** ** * * *
22128613 TCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCATTCCACGAAATCAGCGCACAGGTGCTGAG
1 GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
* * * ** * *
22128678 -TCGGTTGAAGAGGCATAATGCACAAGCCGGGGATCAACCTGGTCCCCTTCTGTGTGCTGTCGAT
66 CT-GGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGGTCCCC-CCTGCGTGCTGTCGAT
* *
22128742 CCCACTACCACAACCCTCGGTCC-AACTGGG
129 CCCGCTGCCACAACCCTCGGTCCGAACTGGG
* *
22128772 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGGTCA
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCA
* *** *
22128836 GCTGGCCGGAGAGGCAGAATGTGTAAGCCGTGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATC
65 GCTGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATC
* * ** *
22128901 CTGCTGCCGCAACCCTCGGTCCGGTCT-GT
130 CCGCTGCCACAACCCTCGGTCCGAACTGGG
* * * * * * * * * *
22128930 TCTTAGACTGGGAATGAAGTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
* * * * ** *
22128995 CTGATCGAAGAGGCATAATGCACAAGTCGGGGATCGG-CTCGGTCCACCTTTGCGTGCTG-CCAG
66 CTGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCT-GGTCC-CCCCTGCGTGCTGTCGA-
*
22129058 TCCCGCTGCCACAACCCTCGGTCTG-ACTGGG
128 TCCCGCTGCCACAACCCTCGGTCCGAACTGGG
* *
22129089 GCTTAGA-TATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCA
1 GCTTAGACT-GGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCA
* * * *
22129153 GCTGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGGTCCCCCCTACATGCTGTCGATC
65 GCTGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATC
* * * * * *
22129218 CTGCTGTCGCAACCCTCGGTCCGATC-CGA
130 CCGCTGCCACAACCCTCGGTCCGAACTGGG
* *
22129247 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCCTATGC
22129275 TTAGACTGGG
Statistics
Matches: 515, Mismatches: 129, Indels: 35
0.76 0.19 0.05
Matches are distributed among these distances:
156 1 0.00
157 79 0.15
158 186 0.36
159 246 0.48
160 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
CTGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCGGTCCGAACTGGG
Found at i:22129072 original size:317 final size:316
Alignment explanation
Indices: 22128456--22129274 Score: 1029
Period size: 317 Copynumber: 2.6 Consensus size: 316
22128446 AACTTTGTAT
* ** * * *
22128456 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
* * * * *
22128521 CCGGCCGAAGAGGCAGAATGCATAAGCCGAGGAT-TGCCCGGTCCCCCCTGTGTGATGTCGATCC
66 CTGGCCGGAGAGGCAGAATGCATAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * * * *
22128585 TACTATCGTAACCTTCGGTTCGAT-TCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
131 TGCTGTCGCAACCCTCGGTCCGATCT-GATCTTAGACTGGGAATGAATTC-GTATGCCTAAGTCA
** ** * *
22128649 TTCCACGAAATCAGCGCACAGGTGCTGAGTCGGTTGAAGAGGCATAATGCACAAGCCGGGGATCA
194 ACCCACGAAATCAGCGCACAGGCACTGAGTCGATCGAAGAGGCATAATGCACAAGCCGGGGATCA
* *
22128714 ACCTGGTCCCCTTCTGTGTGCTGTCGATCCCACTACCACAACCCTCGGTCCAACTGGG
259 ACCTGGTCCCCTTCTGCGTGCTGCCGATCCCACTACCACAACCCTCGGTCCAACTGGG
* *
22128772 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGGTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
** * *
22128837 CTGGCCGGAGAGGCAGAATGTGTAAGCCGTGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
66 CTGGCCGGAGAGGCAGAATGCATAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
22128902 TGCTGCCGCAACCCTCGGTCCGGTCTGTTCTTAGACTGGGAATGAAGTTCGTATGCCTAAGTCAA
131 TGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAA-TTCGTATGCCTAAGTCAA
* ** * *
22128967 CCCACGAAATGAGCGTTCGGGCACTGAG-CTGATCGAAGAGGCATAATGCACAAGTCGGGGATC-
195 CCCACGAAATCAGCGCACAGGCACTGAGTC-GATCGAAGAGGCATAATGCACAAGCCGGGGATCA
** * * **
22129030 GGCTCGGTCCACCTT-TGCGTGCTGCC-AGTCCCGCTGCCACAACCCTCGGTCTGACTGGG
259 ACCT-GGTCC-CCTTCTGCGTGCTGCCGA-TCCCACTACCACAACCCTCGGTCCAACTGGG
* *
22129089 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
* * * * * *
22129154 CTGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGGTCCCCCCTACATGCTGTCGATCC
66 CTGGCCGGAGAGGCAGAATGCATAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* *
22129219 TGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
131 TGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAA-TTCGTATGC
22129275 TTAGACTGGG
Statistics
Matches: 432, Mismatches: 64, Indels: 13
0.85 0.13 0.03
Matches are distributed among these distances:
316 90 0.21
317 335 0.78
318 7 0.02
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
CTGGCCGGAGAGGCAGAATGCATAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAATTCGTATGCCTAAGTCAAC
CCACGAAATCAGCGCACAGGCACTGAGTCGATCGAAGAGGCATAATGCACAAGCCGGGGATCAAC
CTGGTCCCCTTCTGCGTGCTGCCGATCCCACTACCACAACCCTCGGTCCAACTGGG
Found at i:22129277 original size:26 final size:26
Alignment explanation
Indices: 22129248--22129300 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22129238 CCGATCCGAT
*
22129248 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22129274 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
22129300 C
1 C
22129301 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22129622 original size:354 final size:354
Alignment explanation
Indices: 22129050--22130050 Score: 1333
Period size: 354 Copynumber: 2.8 Consensus size: 354
22129040 ACCTTTGCGT
* * * * **
22129050 GCTGCCAGTCCCGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGATATGGAATGAACTCCCTAT
1 GCTGTCAGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCAGTAT
* * * * ** * * * *
22129115 GCCTAAGCCAACCCATGAAATGGGTGTGC-GGGCGCTCAGCTGGTCGGAGAGGCAGAATGCACAA
66 GCCTAAGCCAACCCACGGAACGAGCATGCAGGG-GTTCAACTGATCGGAGAGGTAGAATGCACAA
** * * * * *
22129179 GTCGGGGATCGGCCCGGTCCCCCCTACATGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGATC
130 GTAAGGGATCGGCCCGGTCCCCCCTACATGCTATCGATCCTGCTGCCACAACCCTCGGTTCGGTC
*
22129244 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCA
195 TGATCTTAGACTGGGAATGAACTCCGTATGCTT-GACTGGGGATGAACTCCATATGCCTAAGTCA
* *
22129309 ACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCGGAAAGGCATAATGAGCAAGTAGGGGATCA
259 ACCCACGAAACGAGCGTACGGGTGCTCAACCGGCCGAAAAGGCATAATGAGCAAGTAGGGGATCA
* *
22129374 GCCCGATCCCCCTCTGCCTGTTACTGATCCC
324 GCCCGATCCCCCTATGCCTGCTACTGATCCC
*
22129405 GCTGTCAGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCAGTAT
1 GCTGTCAGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCAGTAT
* * *
22129470 GCCTAAGCCAACCCACGGAACAAGCATGCAGGGGTTCAACCGACCGGAGAGGTAGAATG-ACAAG
66 GCCTAAGCCAACCCACGGAACGAGCATGCAGGGGTTCAACTGATCGGAGAGGTAGAATGCACAAG
* *
22129534 TAAGGGATCGGCCCGGTCCCCCCTACATGCTATCGATCCTGCTGCCATAACCCTCGGTTTGGTCT
131 TAAGGGATCGGCCCGGTCCCCCCTACATGCTATCGATCCTGCTGCCACAACCCTCGGTTCGGTCT
* * *
22129599 GATCTTAGATTGGGGATGAACTCCGTATGCTTGACTGGGGATGAACTCTATATGCCTAAGTCAAC
196 GATCTTAGACTGGGAATGAACTCCGTATGCTTGACTGGGGATGAACTCCATATGCCTAAGTCAAC
* * * *
22129664 CCACGAAACGAGCGTACGGGTGCTCAGCCAGTCGAAAAGGCATAATGAGCAAGTCGGGGATCAGC
261 CCACGAAACGAGCGTACGGGTGCTCAACCGGCCGAAAAGGCATAATGAGCAAGTAGGGGATCAGC
* **
22129729 CCGATCCCTCTATGTGTGCTACTGATCCC
326 CCGATCCCCCTATGCCTGCTACTGATCCC
* * * * * *
22129758 ACTATCAGTCCTACTGCCATAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTTAGTAT
1 GCTGTCAGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCAGTAT
* * * * * *
22129823 GCCGAAGCCAACCTACAGAACGAGCATGCAGGTGTTCAACTGATTGGAGAGGTAGAATGCGCAAG
66 GCCTAAGCCAACCCACGGAACGAGCATGCAGGGGTTCAACTGATCGGAGAGGTAGAATGCACAAG
* * * * * *
22129888 CAAGAGATCGGCCCGATCCCCTCTGCATGCTATCGATCCTGCTGCCACAACCCTCGGTTCAGTCT
131 TAAGGGATCGGCCCGGTCCCCCCTACATGCTATCGATCCTGCTGCCACAACCCTCGGTTCGGTCT
* * * *
22129953 GATCTAAGACTGGTAATGAACTCCATATGCTTGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
196 GATCTTAGACTGGGAATGAACTCCGTATGCTTGACTGGGGATGAACTCCATATGCCTAAGTCAAC
* * *
22130018 CC-CTGAAACGAGCATACGAGTGCTCAATCGGCC
261 CCAC-GAAACGAGCGTACGGGTGCTCAACCGGCC
22130051 AGAGAGATCG
Statistics
Matches: 562, Mismatches: 81, Indels: 7
0.86 0.12 0.01
Matches are distributed among these distances:
353 225 0.40
354 234 0.42
355 100 0.18
356 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (354 bp):
GCTGTCAGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCAGTAT
GCCTAAGCCAACCCACGGAACGAGCATGCAGGGGTTCAACTGATCGGAGAGGTAGAATGCACAAG
TAAGGGATCGGCCCGGTCCCCCCTACATGCTATCGATCCTGCTGCCACAACCCTCGGTTCGGTCT
GATCTTAGACTGGGAATGAACTCCGTATGCTTGACTGGGGATGAACTCCATATGCCTAAGTCAAC
CCACGAAACGAGCGTACGGGTGCTCAACCGGCCGAAAAGGCATAATGAGCAAGTAGGGGATCAGC
CCGATCCCCCTATGCCTGCTACTGATCCC
Found at i:22130509 original size:26 final size:26
Alignment explanation
Indices: 22130480--22130532 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22130470 CCGATTCGAT
22130480 CTTAGACTGGGA-ATGAACTCCGTATG
1 CTTAGA-TGGGAGATGAACTCCGTATG
*
22130506 CTTAGATTGGAGATGAACTCCGTATG
1 CTTAGATGGGAGATGAACTCCGTATG
22130532 C
1 C
22130533 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGATGGGAGATGAACTCCGTATG
Found at i:22131559 original size:25 final size:25
Alignment explanation
Indices: 22131520--22131569 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
22131510 CGGTCTGATC
*
22131520 TTAGACTGGGAATGAACTTCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
22131545 TTAGACT-GGAGATGAACTCCGTATG
1 TTAGACTGGGA-ATGAACTCCGTATG
22131570 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 3 0.13
25 20 0.87
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (25 bp):
TTAGACTGGGAATGAACTCCGTATG
Found at i:22132625 original size:26 final size:26
Alignment explanation
Indices: 22132584--22132636 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22132574 CTGATCTGAT
22132584 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCTATATG
* * *
22132610 CTTAGACTGGGGATGAACTCTTTATG
1 CTTAGACTAGGAATGAACTCTATATG
22132636 C
1 C
22132637 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTATATG
Found at i:22139896 original size:11 final size:11
Alignment explanation
Indices: 22139880--22139907 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
22139870 CGGTTAGGCT
22139880 CTCCGGTGATG
1 CTCCGGTGATG
22139891 CTCCGGTGATG
1 CTCCGGTGATG
22139902 CTCCGG
1 CTCCGG
22139908 GTAAAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.07, C:0.32, G:0.36, T:0.25
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:22140324 original size:158 final size:158
Alignment explanation
Indices: 22139993--22140373 Score: 394
Period size: 158 Copynumber: 2.4 Consensus size: 158
22139983 AATTTCGTAT
* * * * * *
22139993 GCTTAGACATGGAATCAACTCCGTATGCGTAAGCCAACCTAGGAAATGAGCGTGCGAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
* * * *
22140058 CCAGCCAGAGAGGCAGAATGCGCAAGCTAGGGATCAGCTCGATCCCCCATGCGTGCTGTCGATCC
66 CCAGACAAAGAGGCAGAATGCGCAAGCTAAGGATCAGCTCGATCCCCCATGCATGCTGTCGATCC
** * * *
22140123 TGCTGTCGCAACCCTCGGTCCTGTCCGA
131 TGCTACCACAACCCTCGGTCCTGACAGA
* * * * * * * *
22140151 TCTTATAC-TAAGAATGAACTCCGTATGCATATGTCAACCCATGAAACGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCA
* * * * *
22140215 GCC-GACAAAGAGGCATAATGCGTAAG-TCAAGGATCGGCTCGATCCCCCTCTGCATGCTGTCGG
65 GCCAGACAAAGAGGCAGAATGCGCAAGCT-AAGGATCAGCTCGATCCCCC-ATGCATGCTGTCGA
*
22140278 TCCTGCTACCACAACCCTCGGTCC-GACTAGG
128 TCCTGCTACCACAACCCTCGGTCCTGAC-AGA
* * *
22140309 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGATGTGCGAGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAG-CGTGCGAGCGCTCA
22140373 G
65 G
22140374 TCGGCCGAAG
Statistics
Matches: 177, Mismatches: 40, Indels: 12
0.77 0.17 0.05
Matches are distributed among these distances:
156 1 0.01
157 42 0.24
158 133 0.75
159 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
CCAGACAAAGAGGCAGAATGCGCAAGCTAAGGATCAGCTCGATCCCCCATGCATGCTGTCGATCC
TGCTACCACAACCCTCGGTCCTGACAGA
Found at i:22140505 original size:26 final size:26
Alignment explanation
Indices: 22140469--22140521 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22140459 CTGGTCGGAT
*
22140469 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22140495 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22140521 C
1 C
22140522 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22140944 original size:157 final size:157
Alignment explanation
Indices: 22140679--22141488 Score: 614
Period size: 158 Copynumber: 5.1 Consensus size: 157
22140669 CTGGTTGGGG
* *
22140679 CTTAGACATGGAATGAACT-TCGTATGCCCAAGCCAACCCACGAAACGAACGTGCGGGTGCTCAG
1 CTTAGA-ATGGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
* * * * * ** *
22140743 TCGATCGGAGAGGTAGAATGCGCAAGCCATGAATCGGCCCGATCCCCCCTATGTACT-TCGATCC
64 TCGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* *
22140807 TACTGCTGTAACCCTCGATCCGATCTGAT
129 TACTGCCGCAACCCTCGATCCGATCTGAT
* * ** * * * *
22140836 CTTAGATTGAGAATGAACTCTGTATGCCTAAGTCAACCCATAAAATGAACGTGCAGGCGCTGAAT
1 CTTAGAATG-GAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGT
* * * *
22140901 CGGTTGGAGAGGCATAATGCGCAAGCCAGGGATCGACCTGATCCCCCACTGCGTGCTGTCGGTCC
65 CGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCC-CTGCGTGCTGTCGATCC
* * * **
22140966 TACTGCCACAACCCTC-AGTTC-AGCTAGGG
129 TACTGCCGCAACCCTCGA-TCCGATCT-GAT
* * * *
22140995 CTTAGACATGGAATGATCTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGA-ATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGT
* * * * * * * *
22141060 CGATAGGAGAGGGAAAATGCACAAGTCAGGGATCGGCCCGATCGCCCCTGCGTGCTGTCGATCCC
65 CGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
* * * *
22141125 ATTGCCGCAACCCTTGGTCTGATCTGAT
130 ACTGCCGCAACCCTCGATCCGATCTGAT
* * * * * * * *
22141153 CTTAGACTGGGAATGAACTCCGTATGACTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTGAGC
1 CTTAGAAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGT
* * * *
22141218 CGATCGGAGAGGC-TAATGCGCAAGTCAGGGATCGACCC-AGTCCCCCTCTGCATGCTCTCGGTC
65 CGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGA-TCCCCC-CTGCGTGCTGTCGATC
** * **
22141281 CCGCTGCCACAACCCTC-AGTCCGA-CTAGGG
128 CTACTGCCGCAACCCTCGA-TCCGATCT-GAT
* * * * ** *
22141311 CTTAGACATGGAATGAACTGC-CTATGCCTAAGCCAACCAATGAAATGGGCGTGCGGGCACTCAG
1 CTTAGA-ATGGAATGAACT-CTGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
* ** * * *** ** * * * *
22141375 CCGGCCGGAGAGGCAGAATGTGCAAGTTGGGGATCGGTCAGATCCCCCATACGTGCTATCGATCC
64 TCGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* ** * *
22141440 TGCTGTTGTAACCCTCGGTCC-AGTCTGAT
129 TACTGCCGCAACCCTCGATCCGA-TCTGAT
22141469 CTTAGAATGGGAATGAACTC
1 CTTAGAAT-GGAATGAACTC
22141489 CGTTTGCTTA
Statistics
Matches: 514, Mismatches: 117, Indels: 44
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 123 0.24
158 240 0.47
159 145 0.28
160 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGAATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGTC
GATCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTA
CTGCCGCAACCCTCGATCCGATCTGAT
Found at i:22141190 original size:158 final size:160
Alignment explanation
Indices: 22140678--22141374 Score: 646
Period size: 158 Copynumber: 4.4 Consensus size: 160
22140668 TCTGGTTGGG
* * * * * *
22140678 GCTTAGACATGGAATGAACTTCGTATGCCCAAGCCAACCCACGAAACGAACGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * * ** *
22140743 TCGATCGGAGAGGTAGAATGCGCAAGCCATGAATCGGCCCGATCCCCC-CTATGTACT-TCGATC
66 TCGATCGGAGAGGGATAATGCGCAAGCCAGGGATCGACCCGATCCCCCACTGCGTGCTGTCGATC
* ***
22140806 CTACTGCTGTAACCCTC-GATCCGATCT-GA
131 CCACTGCCACAACCCTCAG-TCCGATCTAGA
* * * * * * * *
22140835 TCTTAGA-TTGAGAATGAACTCTGTATGCCTAAGTCAACCCATAAAATGAACGTGCAGGCGCTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * * * *
22140899 ATCGGTTGGAGAGGCATAATGCGCAAGCCAGGGATCGACCTGATCCCCCACTGCGTGCTGTCGGT
65 GTCGATCGGAGAGGGATAATGCGCAAGCCAGGGATCGACCCGATCCCCCACTGCGTGCTGTCGAT
* * * *
22140964 CCTACTGCCACAACCCTCAGTTC-AGCTAGG
130 CCCACTGCCACAACCCTCAGTCCGATCTAGA
* *
22140994 GCTTAGACATGGAATGATCTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * * *
22141059 TCGATAGGAGAGGGAAAATGCACAAGTCAGGGATCGGCCCGATCGCCC-CTGCGTGCTGTCGATC
66 TCGATCGGAGAGGGATAATGCGCAAGCCAGGGATCGACCCGATCCCCCACTGCGTGCTGTCGATC
* * ** *
22141123 CCATTGCCGCAACCCTTGGTCTGATCT-GA
131 CCACTGCCACAACCCTCAGTCCGATCTAGA
* * * * * * *
22141152 TCTTAGAC-TGGGAATGAACTCCGTATGACTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * * * * *
22141216 GCCGATCGGAGA-GGCTAATGCGCAAGTCAGGGATCGACCC-AGTCCCCCTCTGCATGCTCTCGG
65 GTCGATCGGAGAGGGATAATGCGCAAGCCAGGGATCGACCCGA-TCCCCCACTGCGTGCTGTCGA
* *
22141279 TCCCGCTGCCACAACCCTCAGTCCGA-CTAGG
129 TCCCACTGCCACAACCCTCAGTCCGATCTAGA
* * *
22141310 GCTTAGACATGGAATGAACTGCC-TATGCCTAAGCCAACCAATGAAATGGGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
22141374 G
65 G
22141375 CCGGCCGGAG
Statistics
Matches: 432, Mismatches: 95, Indels: 25
0.78 0.17 0.05
Matches are distributed among these distances:
156 3 0.01
157 121 0.28
158 185 0.43
159 120 0.28
160 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
TCGATCGGAGAGGGATAATGCGCAAGCCAGGGATCGACCCGATCCCCCACTGCGTGCTGTCGATC
CCACTGCCACAACCCTCAGTCCGATCTAGA
Found at i:22141387 original size:316 final size:313
Alignment explanation
Indices: 22140676--22141491 Score: 947
Period size: 316 Copynumber: 2.6 Consensus size: 313
22140666 GGTCTGGTTG
* * * * *
22140676 GGGCTTAGACATGGAATGAACTTCGTATGCCCAAGCCAACCCACGAAACGAACGTGCGGGTGCTC
1 GGGCTTAGACATGGAATGAAC-TCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTC
* * * * * *
22140741 AGTCGATCGGAGAGGTAGAATGCGCAAGCCATGAATCGGCCCGATCCCCCCTATGTACTTCGATC
65 AGTCGATCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGAT-CCCCCTACGTGCTTCGATC
* * * * *
22140806 CTACTGCTGTAACCCTCGATCCGATCTGATCTTAGATTGAGAATGAACTCTGTATGCCTAAGTCA
129 CTACTGCTGTAACCCTCGGT-CGATCTGATCTTAGAATGGGAATGAACTCCGTATGACTAAGTCA
* * * * *
22140871 ACCCATAAAATGAACGTGCAGGCGCTGAATCGGTTGGAGAGGCATAATGCGCAAGCCAGGGATCG
193 ACCCACAAAACGAACGTGCAGGCGCTGAACCGATCGGAGAGGCATAATGCGCAAGCCAGGGATCG
* * * * *
22140936 ACCTGATCCCCCACTGCGTGCTGTCGGTCCTACTGCCACAACCCTCAGTTCAGCTA
258 ACCAGATCCCCCACTGCATGCTCTCGGTCCCACTGCCACAACCCTCAGTCCAGCTA
*
22140992 GGGCTTAGACATGGAATGATCTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTC
1 GGGCTTAGACATGGAATGAACTC-GTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTC
* * * * *
22141057 AGTCGATAGGAGAGGGAAAATGCACAAGTCAGGGATCGGCCCGATCGCCCCTGCGTGCTGTCGAT
65 AGTCGATCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGATC-CCCCTACGTGCT-TCGAT
* * * * * *
22141122 CCCATTGCCGCAACCCTTGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGACTAAGTC
128 CCTACTGCTGTAACCCTCGGTC-GATCTGATCTTAGAATGGGAATGAACTCCGTATGACTAAGTC
* * * *
22141187 AACCCACGAAACGAGCGTGC-GAGCGCTGAGCCGATCGGAGAGGC-TAATGCGCAAGTCAGGGAT
192 AACCCACAAAACGAACGTGCAG-GCGCTGAACCGATCGGAGAGGCATAATGCGCAAGCCAGGGAT
* *
22141250 CGACCCAG-TCCCCCTCTGCATGCTCTCGGTCCCGCTGCCACAACCCTCAGTCC-GACTA
256 CGA-CCAGATCCCCCACTGCATGCTCTCGGTCCCACTGCCACAACCCTCAGTCCAG-CTA
* * * *
22141308 GGGCTTAGACATGGAATGAACTGCCTATGCCTAAGCCAACCAATGAAATGGGCGTGCGGGCACTC
1 GGGCTTAGACATGGAATGAACT-CGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTC
* ** * ** * *
22141373 AGCCGGCCGGAGAGGCAGAATGTGCAAGTTGGGGATCGGTCAGATCCCCCATACGTGCTATCGAT
65 AGTCGATCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCC-TACGTGCT-TCGAT
* * *
22141438 CCTGCTGTTGTAACCCTCGGTCCAGTCTGATCTTAGAATGGGAATGAACTCCGT
128 CCTACTGCTGTAACCCTCGGTCGA-TCTGATCTTAGAATGGGAATGAACTCCGT
22141492 TTGCTTAGAC
Statistics
Matches: 420, Mismatches: 70, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
315 9 0.02
316 315 0.75
317 96 0.23
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (313 bp):
GGGCTTAGACATGGAATGAACTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
GTCGATCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCCTACGTGCTTCGATCCT
ACTGCTGTAACCCTCGGTCGATCTGATCTTAGAATGGGAATGAACTCCGTATGACTAAGTCAACC
CACAAAACGAACGTGCAGGCGCTGAACCGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGACC
AGATCCCCCACTGCATGCTCTCGGTCCCACTGCCACAACCCTCAGTCCAGCTA
Found at i:22143070 original size:157 final size:158
Alignment explanation
Indices: 22142771--22143269 Score: 448
Period size: 158 Copynumber: 3.2 Consensus size: 158
22142761 ACTTCGTATG
* * * * * * * *
22142771 CTTAGACAAGGTATGAACTCCGTATGCCTAAGGCAACCCACGAAAC-GAGCGTGCGGGCACTCAG
1 CTTAGACAGGGAATGAACTCCGTATGACTAAGCCAACCCACAAAACAG-GCGTACGGACGCTCAG
** * * * * *
22142835 TTGACC-GAAGAGGCAGAATGCGCAAGCTGGGGACCGGCCCGGTCCCCCCTGCGTGCTGTTGATC
65 CCGACCAG-AGAGGCAAAATACGTAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
* * *
22142899 CTGCTACCATAACCCTCGGTCTGGTCTGAT
129 CTGCTGCCACAACCCTCGGTCCGGTCTGAT
* * ** * * *
22142929 CTTAGAC-GGGAATGAACTCTGTATGACTAAGTCAACCCACAAAATGGGCGTATGGATGCTGAGC
1 CTTAGACAGGGAATGAACTCCGTATGACTAAGCCAACCCACAAAACAGGCGTACGGACGCTCAGC
* * * * *
22142993 CGACCAGAGAGGTATAATACGTAAGCTGGGGATCGGCCCGGTCCCCCCTGCATGCTGCCGATCCC
66 CGACCAGAGAGGCAAAATACGTAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
* * **
22143058 GCTGCCACAACCCTCGATCCGAT-TGGGG
131 GCTGCCACAACCCTCGGTCCGGTCT-GAT
* * * * * * * *
22143086 CTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCTACGAAACAGGCGTGCGGGCGCTCAGC
1 CTTAGACAGGGAATGAACTCCGTATGACTAAGCCAACCCACAAAACAGGCGTACGGACGCTCAGC
* ** * * * * *
22143151 CGGCTGGAGAGGCAAAATGCGTAAGCTGGGGATCGACCCGGTCTCTCCTGCGTGTTGTCGATCCT
66 CGACCAGAGAGGCAAAATACGTAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
* * * *
22143216 ACTGTCGCAACCATCGGTCCGGTCTGAT
131 GCTGCCACAACCCTCGGTCCGGTCTGAT
*
22143244 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
22143270 CTTAGATTGG
Statistics
Matches: 266, Mismatches: 70, Indels: 10
0.77 0.20 0.03
Matches are distributed among these distances:
156 1 0.00
157 120 0.45
158 144 0.54
159 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACAGGGAATGAACTCCGTATGACTAAGCCAACCCACAAAACAGGCGTACGGACGCTCAGC
CGACCAGAGAGGCAAAATACGTAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGGTCTGAT
Found at i:22145095 original size:26 final size:26
Alignment explanation
Indices: 22145044--22145096 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22145034 CTGGTCTGGT
*
22145044 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
22145070 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
22145096 C
1 C
22145097 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Done.