Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 215 of 402
Found at i:22145416 original size:26 final size:26
Alignment explanation
Indices: 22145387--22145439 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22145377 CCGGTCTGAT
22145387 CTTAGACTGAGAATGAAC-TCTGTATG
1 CTTAGACTGAGAATGAACTTC-GTATG
* *
22145413 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
22145439 C
1 C
22145440 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTTCGTATG
Found at i:22145511 original size:343 final size:342
Alignment explanation
Indices: 22144886--22145512 Score: 789
Period size: 343 Copynumber: 1.8 Consensus size: 342
22144876 AACTCTGTAT
*
22144886 GCTTAGACATGGAATGAACTCAGTATGCCCAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTCACTATGCCCAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAG
* *
22144951 TCGACCGAAGAGGCAGAATGTGCAAGCCGAGGATCAGACCAGTCCCCCTACGTGCTGTCGATCCT
66 TCGACCGAAGAGGCAAAATGTGCAAGCCGAGGATCAGACCAGTCCCCCTACGTGCTGCCGATCCT
* * * * *
22145016 ACTATCGCAACCCTCAGCCTGGTCTGGTCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGT
131 ACTATCGCAACACTCAGCCCGGTCTGATCTTAGACTGAGAATGAACTTCATATGCTTAGACTGGG
* * * * * ***
22145081 AATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGTGTGCGGGGGCTGAGCTGATGGGAGAG
196 AATGAACTCCGTATGCCTAAGTCAACCAACCAAACAAGCGTGCAGGCGCTCAGCTGACCAGAGAG
*
22145146 GCATAATGCGCAAGCCGGGGATCGGCCTGATCCCCCTCTGCGTGCTGTCGGTCTCGCTGCCACAA
261 GCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCTCTGCGTGCTGTCGGTCTCGCTGCCACAA
22145211 CCCTTGGTCCGACCGGG
326 CCCTTGGTCCGACCGGG
* * * * * * *
22145228 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCACTATGCCCAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAG
* * * * * *
22145293 -CTGGCCAGAA-AGGTAAAAT-TCGCAAGCCGGGGAT-TGACCTGGTCCCCCCTGCGTGCTGCCG
66 TC-GACC-GAAGAGGCAAAATGT-GCAAGCCGAGGATCAGACC-AGT-CCCCCTACGTGCTGCCG
* * * * *
22145354 ATCCTGCTGTCGTAACACTCGGCCCGGTCTGATCTTAGACTGAGAATGAAC-TCTGTATGCTTAG
126 ATCCTACTATCGCAACACTCAGCCCGGTCTGATCTTAGACTGAGAATGAACTTC-ATATGCTTAG
* * * *
22145418 ACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACCAAACGAGCGTGCAGGCGCTCAG-TCGAC
190 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACCAAACAAGCGTGCAGGCGCTCAGCT-GAC
*
22145482 CAGAGAGGCAGGATGCGCAAGCCGGGGATCG
254 CAGAGAGGCAGAATGCGCAAGCCGGGGATCG
22145513 AACGGGTGGT
Statistics
Matches: 238, Mismatches: 40, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
341 6 0.03
342 84 0.35
343 148 0.62
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.19
Consensus pattern (342 bp):
GCTTAGACATGGAATGAACTCACTATGCCCAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAG
TCGACCGAAGAGGCAAAATGTGCAAGCCGAGGATCAGACCAGTCCCCCTACGTGCTGCCGATCCT
ACTATCGCAACACTCAGCCCGGTCTGATCTTAGACTGAGAATGAACTTCATATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCAACCAAACAAGCGTGCAGGCGCTCAGCTGACCAGAGAG
GCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCTCTGCGTGCTGTCGGTCTCGCTGCCACAA
CCCTTGGTCCGACCGGG
Found at i:22146154 original size:26 final size:26
Alignment explanation
Indices: 22146111--22146163 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22146101 GGCTCAAAAT
*
22146111 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAACGAACTCCATATG
*
22146137 CTTAGACATGG-AACGAACTCCGTATG
1 CTTAGAC-TGGAAACGAACTCCATATG
22146163 C
1 C
22146164 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAACGAACTCCATATG
Found at i:22146509 original size:159 final size:158
Alignment explanation
Indices: 22146136--22146567 Score: 451
Period size: 159 Copynumber: 2.7 Consensus size: 158
22146126 AACTCCATAT
* * * *
22146136 GCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * *
22146201 CCGGTC-AGAGAGGCAGAATGTGCAAGCCAGGGATGGGCCCGATCCCCCCTTCGTGCTATCGATC
66 CCGGTCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTTCGTGCTACCGATC
* * ** *
22146265 CTGTTGCCGTAACCCTCGGTCCGGTCTGA
130 CCGCTGCCACAACCCTCGATCCGGTCTGA
* * * * * * * *
22146294 TCTTAGAC-TGGGAATGGACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
22146358 CCCGGTCGAAGAGGC-GTAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGT-GTGCTGCCG
65 ACCGGTCGAAGAGGCAG-AATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CT-TCGTGCTACCG
* *
22146421 GTCCCGCTGCCACAACCCTCGATCCGG-CTAGG
127 ATCCCGCTGCCACAACCCTCGATCCGGTCT-GA
* * * *
22146453 GCTTATACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
** * * *
22146518 CCGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCAGTCCCCCCT
66 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCT
22146568 GCATGCTGTT
Statistics
Matches: 221, Mismatches: 45, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
157 2 0.01
158 94 0.43
159 122 0.55
160 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTTCGTGCTACCGATCC
CGCTGCCACAACCCTCGATCCGGTCTGA
Found at i:22147373 original size:26 final size:26
Alignment explanation
Indices: 22147335--22147416 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 26
22147325 GGCTTAAAAT
22147335 CTTAGAC-TAGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTTCGTATG
22147361 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
*
22147387 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
22147413 CTTA
1 CTTA
22147417 AGCCAACCCA
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
26 53 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:22148337 original size:159 final size:158
Alignment explanation
Indices: 22148014--22148662 Score: 551
Period size: 159 Copynumber: 4.1 Consensus size: 158
22148004 AGAACCCTCA
* * * * * * **
22148014 GTCCCCC-CTGCGTGCTGTCGATCCTACTGCCATAACCCTCGGTCC-AATCCGATCTTAGACTGG
1 GTCCCCCTCTGCGTGCTCTAG-TCCTGCTGCCACAACCCTCGGTCCGACT-AGGGCTTAGACTGG
* * * * * * * *
22148077 GAATGAACTTCGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGCACTGAGCCGGTCAAAGA
64 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCCAGTCGAAGA
* * *
22148142 GGCATAATGCGCAAGCCTGGGATCGGCCCG
129 GGCAGAATGCACAAGCCGGGGATCGGCCCG
** *
22148172 GTCCCCCTCTGCGTGCTACTAGTCCTGCTGCCACAACCCTCTATCCGGCTAGGGCTTAGACAT-G
1 GTCCCCCTCTGCGTGCT-CTAGTCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGAC-TGG
* * *
22148236 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCTAGCCGGAGA
64 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCCAGTCGAAGA
* *
22148301 GGCAGAAT-CGCAAGCCGGGGATCGGCCTG
129 GGCAGAATGCACAAGCCGGGGATCGGCCCG
* * * * * * **
22148330 GTCCCCC-CTGCGTGCTGTCAATCCTACTGCCGCAACCCTCGGTCTGATCCA-ATCTTAGACTGG
1 GTCCCCCTCTGCGTGCTCT-AGTCCTGCTGCCACAACCCTCGGTCCGA-CTAGGGCTTAGACTGG
*** * * * * * *
22148393 GAATGAACTTTGTATGCCTAAGTCAACCCACGAAATAAGCGTGCGGGCGTTGAGCCAATCGAAGA
64 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCCAGTCGAAGA
* * * *
22148458 GGCATAATTCACAAGTCGGGGATCGACCCG
129 GGCAGAATGCACAAGCCGGGGATCGGCCCG
* * * * * *
22148488 GTCCCTCTCTACGTGCTGCT-GATCCCGCTACCACAACCCTCGGTCCAACTGGGGCTTAGACAT-
1 GTCCCCCTCTGCGTGCT-CTAG-TCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGAC-TG
* * * * * * * *
22148551 GGAATGAACTCCCAATGCCTAAGCCAACCCACGAAACGGGTGTACGGGTGCTCAGTCAGTTGGAG
63 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCCAGTCGAAG
* * * *
22148616 AGGTAGAATGCACAAGTCGAGGATCGGCTCG
128 AGGCAGAATGCACAAGCCGGGGATCGGCCCG
*
22148647 GTCCCCC-CTACGTGCT
1 GTCCCCCTCTGCGTGCT
22148663 GTCGATCCTA
Statistics
Matches: 387, Mismatches: 91, Indels: 26
0.77 0.18 0.05
Matches are distributed among these distances:
156 2 0.01
157 98 0.25
158 68 0.18
159 213 0.55
160 6 0.02
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (158 bp):
GTCCCCCTCTGCGTGCTCTAGTCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACTGGGA
ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCCAGTCGAAGAGG
CAGAATGCACAAGCCGGGGATCGGCCCG
Found at i:22148598 original size:316 final size:317
Alignment explanation
Indices: 22148014--22148674 Score: 889
Period size: 316 Copynumber: 2.1 Consensus size: 317
22148004 AGAACCCTCA
* *
22148014 GTCCCCCCTGCGTGCTGTCGATCCTACTGCCATAACCCTCGGTCCAATCCGATCTTAGACTGGGA
1 GTCCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCGGTCCAATCCAATCTTAGACTGGGA
* **
22148079 ATGAACTTCGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGCACTGAGCCGGTCAAAGAGG
66 ATGAACTTCGTATGCATAAGTCAACCCACGAAATAAGCGTACGGGCACTGAGCCAATCAAAGAGG
* * * * * *
22148144 CATAATGCGCAAGCCTGGGATCGGCCCGGTCCCCCTCTGCGTGCTACTAGTCCTGCTGCCACAAC
131 CATAATGCACAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTACTAGTCCCGCTACCACAAC
* ** * *
22148209 CCTCTATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGA
196 CCTCGATCCAACTAGGGCTTAGACATGGAATGAACTCCCAATGCCTAAGCCAACCCACGAAACGA
* *
22148274 GCGTACGGGCGCTCAG-CTAGCCGGAGAGGCAGAAT-CGCAAGCCGGGGATCGGC-CTG
261 GCGTACGGGCGCTCAGTC-AGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCTC-G
* * **
22148330 GTCCCCCCTGCGTGCTGTCAATCCTACTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGA
1 GTCCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCGGTCCAATCCAATCTTAGACTGGGA
* * * ** *
22148395 ATGAACTTTGTATGCCTAAGTCAACCCACGAAATAAGCGTGCGGGCGTTGAGCCAATCGAAGAGG
66 ATGAACTTCGTATGCATAAGTCAACCCACGAAATAAGCGTACGGGCACTGAGCCAATCAAAGAGG
* * * *
22148460 CATAATTCACAAGTCGGGGATCGACCCGGTCCCTCTCTACGTGCTGCT-GATCCCGCTACCACAA
131 CATAATGCACAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTACTAG-TCCCGCTACCACAA
* *
22148524 CCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCCAATGCCTAAGCCAACCCACGAAACG
195 CCCTCGATCCAACTAGGGCTTAGACATGGAATGAACTCCCAATGCCTAAGCCAACCCACGAAACG
* * * ** * *
22148589 GGTGTACGGGTGCTCAGTCAGTTGGAGAGGTAGAATGCACAAGTCGAGGATCGGCTCG
260 AGCGTACGGGCGCTCAGTCAGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCTCG
*
22148647 GTCCCCCCTACGTGCTGTCGATCCTACT
1 GTCCCCCCTGCGTGCTGTCGATCCTACT
22148675 ATCGAAAAAC
Statistics
Matches: 298, Mismatches: 43, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
315 1 0.00
316 253 0.85
317 43 0.14
318 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (317 bp):
GTCCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCGGTCCAATCCAATCTTAGACTGGGA
ATGAACTTCGTATGCATAAGTCAACCCACGAAATAAGCGTACGGGCACTGAGCCAATCAAAGAGG
CATAATGCACAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTACTAGTCCCGCTACCACAAC
CCTCGATCCAACTAGGGCTTAGACATGGAATGAACTCCCAATGCCTAAGCCAACCCACGAAACGA
GCGTACGGGCGCTCAGTCAGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCTCG
Found at i:22148731 original size:26 final size:26
Alignment explanation
Indices: 22148702--22148752 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
22148692 GGTCTGATCC
*
22148702 TAGACT-GGGATTGAACTCTGTATGCT
1 TAGACTGGGGA-TGAACTCCGTATGCT
22148728 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGGATGAACTCCGTATGC
22148753 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGGATGAACTCCGTATGCT
Found at i:22149460 original size:26 final size:26
Alignment explanation
Indices: 22149422--22149474 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22149412 GGCTCAAACT
22149422 CTTAGACTGGGAATGAACGCGGTATG
1 CTTAGACTGGGAATGAACGCGGTATG
* *
22149448 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACGCGGTATG
22149474 C
1 C
22149475 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCGGTATG
Found at i:22149949 original size:26 final size:26
Alignment explanation
Indices: 22149913--22149965 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22149903 CTTGTCCAAT
22149913 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
22149939 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
22149965 C
1 C
22149966 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:22150663 original size:26 final size:26
Alignment explanation
Indices: 22150622--22150674 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22150612 CCGGTCTGAT
*
22150622 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
22150648 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
22150674 C
1 C
22150675 CTAAGTCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:22151336 original size:26 final size:26
Alignment explanation
Indices: 22151307--22151359 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22151297 CCGATCCGAT
22151307 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22151333 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22151359 C
1 C
22151360 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22151692 original size:26 final size:26
Alignment explanation
Indices: 22151663--22151714 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22151653 CGATCCAATG
22151663 TTAGAC-TAGGAATGAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
*
22151689 TTAGACATGGAATGAACTCTGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
22151715 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:22151875 original size:187 final size:184
Alignment explanation
Indices: 22151502--22151875 Score: 439
Period size: 187 Copynumber: 2.0 Consensus size: 184
22151492 GTCCAACTAG
*
22151502 TGCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
1 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * * *
22151567 GCCAGTCGAAGAAGTAGAATGCACAAGCCAAGGATCGGCTTGGTCCCCCCTACATGATCTCGATC
66 ACCAGTCGAAGAAGTAGAATGCACAAGCCAAGGATCGACTCGGTCCCCCCTACATGATCTCAATC
* * * *
22151632 CTGCTGCTGCAACCCTCAGTCCGATCCAATGTTAGACTAGGAATGAACTCCGTA
131 CTACTACTGCAACCCTCAGTCCGATCCAATCTTAGACTAGGAATAAACTCCGTA
* ** *
22151686 TGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAGCGAGTGTGCGTGCGGGCG
1 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGA----GCGTGCGGGCG
* * * * ** * * *
22151751 CTCAACCGGATGGAA-AGGTAGAATGCGCAAGCTGAGGATCAGAC-CGGT-CCCCCTACGTGCTG
62 CTCAACCAG-TCGAAGAAGTAGAATGCACAAGCCAAGGATC-GACTCGGTCCCCCCTACATGATC
* * * *
22151813 TCAATCCTACTACTGTAACCCTCAGTCCGGTCCAATCTTAGACTGGGCATAAACTCCGTA
125 TCAATCCTACTACTGCAACCCTCAGTCCGATCCAATCTTAGACTAGGAATAAACTCCGTA
22151873 TGC
1 TGC
22151876 CTAAGTTAAC
Statistics
Matches: 158, Mismatches: 26, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
184 45 0.28
187 65 0.41
188 42 0.27
189 6 0.04
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (184 bp):
TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
ACCAGTCGAAGAAGTAGAATGCACAAGCCAAGGATCGACTCGGTCCCCCCTACATGATCTCAATC
CTACTACTGCAACCCTCAGTCCGATCCAATCTTAGACTAGGAATAAACTCCGTA
Found at i:22152217 original size:26 final size:26
Alignment explanation
Indices: 22152166--22152217 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22152156 CTAGTCTGAT
* *
22152166 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
22152192 CTTAGACTGAGG-ATGAACTCCATATG
1 CTTAGACTG-GGAATGAACTCCATATG
22152218 TCGAAGTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22152670 original size:26 final size:26
Alignment explanation
Indices: 22152632--22152684 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22152622 GGCTCAAAAT
22152632 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22152658 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
22152684 C
1 C
22152685 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22154269 original size:26 final size:26
Alignment explanation
Indices: 22154240--22154292 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22154230 CCGGTTTGAT
22154240 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
22154266 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22154292 C
1 C
22154293 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22154980 original size:26 final size:26
Alignment explanation
Indices: 22154951--22155003 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22154941 CTGGTCTTAT
*
22154951 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
22154977 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22155003 C
1 C
22155004 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22155021 original size:711 final size:711
Alignment explanation
Indices: 22153749--22155033 Score: 1740
Period size: 711 Copynumber: 1.8 Consensus size: 711
22153739 TTATACTGGA
* * *
22153749 AATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGC
1 AATGAACTCCGTATGCATAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGC
* * * ** * *
22153814 GTGCGGGCACTCAATCGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTT
66 GTGCGGGCACTCAACCGACCGGAGAGGTAGAATGAGTAAGCCAAGGACCGGCCCGGTCCCCCCAT
* * * * * *
22153879 GCATGCTGTCGATCCTATTTTCACAACCGTCAGTCCGGTCTAATCTGAGACTTGGAATGAACTCC
131 ACATGCTATCGATCCTACTATCACAACCGTCAGTCCGGTCCAATCTGAGACTAGGAATGAACTCC
* * * *
22153944 GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGTTGAGCAGACCGAAGAGGCATAATGCG
196 GTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGTGCTGAACAGACCGAAGAGGCATAATACG
* * * *
22154009 CAAGCCAGGGATTGGCTCAATCCCCCTCTACGTGCTGTCAGTCCCGCTGCCACAACCCTCAGTCC
261 CAAGCCAGGGATCGGCCCAATCCCCCTCTACGTGCTGTCAGTCCCACTACCACAACCCTCAGTCC
* * * *
22154074 GGCTGGGGCTTAGACATGGAATGGACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATACGGG
326 GACTGGGGCTTAAACATGGAATGGACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATACAGG
* * * *** *
22154139 TGCTCAGCCATCTGGAGAGGCAGAATGAGTAAGCCGGGGATCGGTGTGGTCTCCCCTGCGTGCTA
391 CGCTCAGCCATCCGGAGAGGCAAAATGAGTAAGCCGGGGATCGACCTGGTCCCCCCTGCGTGCTA
* * *
22154204 TCGATCCTGCTACTACAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTT
456 CCGATCCTACTACTACAACCCTCGGTCCGGTTTGATCTTAGACTAGGAATGAACTCCGTATGCTT
* * * * * *
22154269 AGATTGGGGATGAACTCTGTATGCCTAGGTCAACTCATGAAATGAGCGTGCGGGAGCTCAGTTGA
521 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGCGCGGGAGCTCAGTTGA
22154334 TCAGAGAGGATGACTGGAAAGGTAGAATGCGTAAGCTAGGGATCAACTCGATCCCCCCTATGTGC
586 TCAGAGAGGATGACTGGAAAGGTAGAATGCGTAAGCTAGGGATCAACTCGATCCCCCCTATGTGC
22154399 TGCCAATCCTGCTGCTGGTCCTGCTACCACAACCCTCGGTCTGATCCGATCTAAGACTAGG
651 TGCCAATCCTGCTGCTGGTCCTGCTACCACAACCCTCGGTCTGATCCGATCTAAGACTAGG
* *
22154460 AATGAACTCTGTATGCATAGACATGGAATGAACTCTGTATGCCTAAGCCAACACACGAAACGAGC
1 AATGAACTCCGTATGCATAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGC
* * *
22154525 GTGCGGGCACTCAGCCGATCGGAGAGGTAGAATGAGTAAGTCAAGGACCGGCCCGGTCCCCCCAT
66 GTGCGGGCACTCAACCGACCGGAGAGGTAGAATGAGTAAGCCAAGGACCGGCCCGGTCCCCCCAT
* * * * * *
22154590 ACGTGCTATTGATCTTACTATCACAACCTTC-GATCCGGTCCAATTTTAGACTAGGAATGAACTC
131 ACATGCTATCGATCCTACTATCACAACCGTCAG-TCCGGTCCAATCTGAGACTAGGAATGAACTC
* * * ** *
22154654 CGTATGCCTAAGTCAACCCATAAAACGATCGTTCGGGTGCTGAACTGGTCGGAGAGGCATAATAC
195 CGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGTGCTGAACAGACCGAAGAGGCATAATAC
* * * *
22154719 GCAAGCCGGGGATCGGCCCGATCCCCTTCTGCGTGCTGTC-GATCCCACTACCACAACCCTC-GA
260 GCAAGCCAGGGATCGGCCCAATCCCCCTCTACGTGCTGTCAG-TCCCACTACCACAACCCTCAG-
* ** *
22154782 TCTGACTGGGGCTTAAACAAT-GAAT-GATCTCCCTATGCCTAAGCCAACCCATGAAACGAGCGT
323 TCCGACTGGGGCTTAAAC-ATGGAATGGA-CTCCCTATGCCTAAGCCAACCCACAAAACGAGCAT
* * * * *
22154845 GCAGGCGCTCAGTCGA-CCGGAGAGGCAAAATGCGTAAGCTGGTGATCGACCTGGTCCCCCCTGC
386 ACAGGCGCTCAG-CCATCCGGAGAGGCAAAATGAGTAAGCCGGGGATCGACCTGGTCCCCCCTGC
* * * *
22154909 GTGCTACCGATCCTACT-GTCGCAACCCTCGGTCTGGTCTT-ATCTTAGACTAGGAATGAACTCT
450 GTGCTACCGATCCTACTACT-ACAACCCTCGGTCCGGT-TTGATCTTAGACTAGGAATGAACTCC
22154972 GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGCGCGGG
513 GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGCGCGGG
22155034 CACTCAGCCG
Statistics
Matches: 488, Mismatches: 78, Indels: 16
0.84 0.13 0.03
Matches are distributed among these distances:
710 6 0.01
711 476 0.98
712 6 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (711 bp):
AATGAACTCCGTATGCATAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGC
GTGCGGGCACTCAACCGACCGGAGAGGTAGAATGAGTAAGCCAAGGACCGGCCCGGTCCCCCCAT
ACATGCTATCGATCCTACTATCACAACCGTCAGTCCGGTCCAATCTGAGACTAGGAATGAACTCC
GTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGTGCTGAACAGACCGAAGAGGCATAATACG
CAAGCCAGGGATCGGCCCAATCCCCCTCTACGTGCTGTCAGTCCCACTACCACAACCCTCAGTCC
GACTGGGGCTTAAACATGGAATGGACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATACAGG
CGCTCAGCCATCCGGAGAGGCAAAATGAGTAAGCCGGGGATCGACCTGGTCCCCCCTGCGTGCTA
CCGATCCTACTACTACAACCCTCGGTCCGGTTTGATCTTAGACTAGGAATGAACTCCGTATGCTT
AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGCGCGGGAGCTCAGTTGA
TCAGAGAGGATGACTGGAAAGGTAGAATGCGTAAGCTAGGGATCAACTCGATCCCCCCTATGTGC
TGCCAATCCTGCTGCTGGTCCTGCTACCACAACCCTCGGTCTGATCCGATCTAAGACTAGG
Found at i:22155472 original size:184 final size:184
Alignment explanation
Indices: 22155134--22155524 Score: 518
Period size: 184 Copynumber: 2.1 Consensus size: 184
22155124 ACCCGGTCTG
* *
22155134 ATCTTAGACTGGTGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 ATCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * *
22155199 GCTGGCCGGAGAGGCCGACCGGAGAGGCAGAATGTGAAAGTCGAGGATCGACTCGGTCCACCCCT
66 GCAGGCCAGAGAGGCCGACCGGAGAGGCAGAATATGAAAGCCGAGGATCGACTCGATCCACCCCT
** ** *
22155264 ACATGCTGTCAATCCCGTTGCTAGTCCTAC-AGCTGCAACCCTCAGTCCGGTCCA
131 ACATGCTACCAATCCCACTGCTAGTCCTACTAGC-GCAACCCTCAGTCCGATCCA
* * *
22155318 ATCTTAGATTGGGGATAAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCA
1 ATCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
*
22155383 GCAGGCCAGAGAGGCCGACTGGAGAGGCA-AGATATGAAAGCCGAGGATC-AGCTCGATCCACCC
66 GCAGGCCAGAGAGGCCGACCGGAGAGGCAGA-ATATGAAAGCCGAGGATCGA-CTCGATCCACCC
* * * * * * *
22155446 CTGCATGCTACCGATCCTACTGCTAGTCTTGCTATCGCAACCCTCAGTTCGATCCA
129 CTACATGCTACCAATCCCACTGCTAGTCCTACTAGCGCAACCCTCAGTCCGATCCA
*
22155502 ATCTTAGACTGGGAATGAACTCC
1 ATCTTAGACTGGGGATGAACTCC
22155525 GGATGCTTAG
Statistics
Matches: 178, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
183 2 0.01
184 174 0.98
185 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (184 bp):
ATCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
GCAGGCCAGAGAGGCCGACCGGAGAGGCAGAATATGAAAGCCGAGGATCGACTCGATCCACCCCT
ACATGCTACCAATCCCACTGCTAGTCCTACTAGCGCAACCCTCAGTCCGATCCA
Found at i:22155542 original size:26 final size:26
Alignment explanation
Indices: 22155504--22155556 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22155494 TCGATCCAAT
22155504 CTTAGACTGGGAATGAACTCCGGATG
1 CTTAGACTGGGAATGAACTCCGGATG
*
22155530 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGGATG
22155556 C
1 C
22155557 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGGATG
Found at i:22156423 original size:170 final size:170
Alignment explanation
Indices: 22156154--22156520 Score: 422
Period size: 170 Copynumber: 2.2 Consensus size: 170
22156144 CCAGCTGGGG
* * *
22156154 CTTAGACAT-GGAACGAACTCCGTATGCCTATGCCAACCCACGAAATGAGCATACGGGTACTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTACTCAA
* * * *
22156218 TCAGCCAGAGAGGTAGAATGCGCAAGCCTGGGATCGGCCCAG-TCCCCCCTACGTGCTGTCGATC
65 TCAGCCAGAGAGGCAAAATGCGCAAGCCTGGGATCGG-CCAGATCCCCCCTACATGCTATCGATC
* *
22156282 CTACTGCTGGTCTTGCTGTCGTAACCCTCG-GTCTGGTCCGAT
129 CTACTGCTGGTCCTGCTGTCGTAACCCTCGATTC-GGTCCGAT
* * * *
22156324 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCT-AAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTACTCAA-
* * * * * * *
22156388 TC-GATCGGAGAGGCAAAATGCGTAAG-GTAGGGATCGGCCTGATCCCTCCTGCATGCTATCGAT
65 TCAG-CCAGAGAGGCAAAATGCGCAAGCCT-GGGATCGGCCAGATCCCCCCTACATGCTATCGAT
* * *
22156451 CCTGCTGCTGGTCCTGTTGTCGTAACCCTCGATTCGGTTCGAT
128 CCTACTGCTGGTCCTGCTGTCGTAACCCTCGATTCGGTCCGAT
*
22156494 CTTAGACTGGGAATGAATTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
22156521 TTAGACATGG
Statistics
Matches: 167, Mismatches: 24, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
169 8 0.05
170 157 0.94
171 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (170 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTACTCAAT
CAGCCAGAGAGGCAAAATGCGCAAGCCTGGGATCGGCCAGATCCCCCCTACATGCTATCGATCCT
ACTGCTGGTCCTGCTGTCGTAACCCTCGATTCGGTCCGAT
Found at i:22158317 original size:159 final size:156
Alignment explanation
Indices: 22157912--22158356 Score: 405
Period size: 159 Copynumber: 2.8 Consensus size: 156
22157902 ATCCAGTCCG
* * * ** * * ** *
22157912 TATGCCTAAGCAAACCCATGAAATGAGCGTGCAGGTGCTCAACCGGCTAGAGAGCCAGAATGTGC
1 TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCAGCCGGAGAGGCAGAATGTGC
** * * * * *
22157977 AAGCTGGGGACCGGCCCGGTCCCCC-CTGTGTGTTGTCGATCCTGCTACCGCAACCCTCGGTTCG
66 AAGCCAGGGATC-GACCGGTCCCCCTCTGTGTG-TGTCGATCCTGCTGCCACAACCCTCGG-TCC
* *** * *
22158041 GTCTGACCTTAGATTGGGAATGAACTTCG
128 GACTGACCTTAGACAAGGAATGAACTCCC
* * * * * *
22158070 TATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTGAGTCGGCCGGAGAGGCAGAATGCGC
1 TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCAGCCGGAGAGGCAGAATGTGC
* * * *
22158135 AAGCCAGGGATCAACCTGATCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCG
66 AAGCCAGGGATCGACC-GGTCCCCCTCTGTGTG-TGTCGATCCTGCTGCCACAACCCTCGGTCCG
** *
22158200 ACTAGGGCTTAGACAAGGAATGATCTCCC
129 ACT-GACCTTAGACAAGGAATGAACTCCC
* * *
22158229 TATGCTTAAGCCAACCCACGAAACTG-GCGTGCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGTG
1 TATGCCTAAGCCAACCCACGAAA-TGAGCGTGCGGGCACTCAGCCAGCCGGAGAGGCAGAATGTG
*
22158293 CAAGCCAGGGATCGACACGGTCCCCCTGC-GTGT-TG-CTGATCCTGCTGCCACAACCCTCGATC
65 CAAGCCAGGGATCGAC-CGGTCCCCCT-CTGTGTGTGTC-GATCCTGCTGCCACAACCCTCGGTC
22158355 CG
127 CG
22158357 GTCCAATCTT
Statistics
Matches: 233, Mismatches: 47, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
156 1 0.00
157 28 0.12
158 74 0.32
159 126 0.54
160 4 0.02
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.19
Consensus pattern (156 bp):
TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCAGCCGGAGAGGCAGAATGTGC
AAGCCAGGGATCGACCGGTCCCCCTCTGTGTGTGTCGATCCTGCTGCCACAACCCTCGGTCCGAC
TGACCTTAGACAAGGAATGAACTCCC
Found at i:22158771 original size:26 final size:26
Alignment explanation
Indices: 22158720--22158772 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22158710 CCGGTCTGAT
**
22158720 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
22158746 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
22158772 C
1 C
22158773 CTAGGCAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22159256 original size:26 final size:26
Alignment explanation
Indices: 22159220--22159272 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22159210 CTGGTCTGAT
22159220 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22159246 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22159272 C
1 C
22159273 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22161111 original size:26 final size:26
Alignment explanation
Indices: 22161073--22161125 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22161063 CCGATTGGAT
*
22161073 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22161099 CTTAGACAT-GGAATGATCTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22161125 C
1 C
22161126 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22161459 original size:159 final size:156
Alignment explanation
Indices: 22161098--22161594 Score: 414
Period size: 158 Copynumber: 3.2 Consensus size: 156
22161088 AACTCTGTAT
* * * *
22161098 GCTTAGACATGGAATGATCTCCGTATGCCTAAGCTAACCCATGAAACGAGCATGCGGTGCTCAGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGCGCTCAGC
* * * * ** *
22161163 TGGTCGGAGAGGCAGAATGCGCAAGCCGAGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCCTG
66 TGGCCGAAGAGGCAGAATGCGCAAGCCAAGATCGGCCCGATCCCCCCTACGTACTGTCGATCCTG
* *** **
22161228 TTGTTGCAAACCTTGGTCCAGTCCGA
131 CTGCCACAAACCTCAGTCCAGTCCGA
* * ** * *
22161254 TCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCATA-CCACCAAACGAGCGTTCGGGCGCTGA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA-ACCCATGAAACGAGCGTGC-GGCGCTCA
* * *
22161317 G-TAGGCCGAAGAGGCATAATGCGCAAGCCAAGGATCGGCTCGATCCCCCTCTACGTACTGTCGG
64 GCT-GGCCGAAGAGGCAGAATGCGCAAGCCAA-GATCGGCCCGATCCCCC-CTACGTACTGTCGA
** *
22161381 TCCTGCTGCCACAAACCTCAGTCC-GATTGGG
126 TCCTGCTGCCACAAACCTCAGTCCAG-TCCGA
* * * * *
22161412 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGCGCTCAG
* * * * * * * *
22161477 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATAGGCCC-AGTCCCTCCTGCGTCCTGTCGATC
65 CTGGCCGAAGAGGCAGAATGCGCAAGCCA-AGATCGGCCCGA-TCCCCCCTACGTACTGTCGATC
* * * * *
22161541 CTGCTGTCGCAACCCTCGGTCC-GATCCAA
128 CTGCTGCCACAAACCTCAGTCCAG-TCCGA
*
22161570 TCTTAGAC-TGGGAATGAACTCCGTA
1 GCTTAGACAT-GGAATGAACTCCGTA
22161595 AGCTTAGACT
Statistics
Matches: 268, Mismatches: 61, Indels: 22
0.76 0.17 0.06
Matches are distributed among these distances:
155 38 0.14
156 39 0.15
157 17 0.06
158 94 0.35
159 80 0.30
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGCGCTCAGC
TGGCCGAAGAGGCAGAATGCGCAAGCCAAGATCGGCCCGATCCCCCCTACGTACTGTCGATCCTG
CTGCCACAAACCTCAGTCCAGTCCGA
Found at i:22161600 original size:26 final size:26
Alignment explanation
Indices: 22161571--22161620 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
22161561 CCGATCCAAT
22161571 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
*
22161597 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
22161621 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:22162125 original size:154 final size:153
Alignment explanation
Indices: 22161728--22162125 Score: 347
Period size: 158 Copynumber: 2.5 Consensus size: 153
22161718 TTTCGATCCC
* * **
22161728 GCTGTCGGTC-CTGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATAAACTCTGTA
1 GCTGTCGGTCTC-GCTGCCACAACCCTCGGTCC--C-A-GTCTTAGACATGGAATGAACTCCATA
* * * * * *
22161792 TGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGTCAGTCGGGGAGGTAGAATGCACTA
61 TGCCT-AGCCAACCCATGAAATGAGCGTGCGAGCACTCAGCCAGCCGGAGAGGCAGAATGCACTA
22161857 GCCGGGTACCGGCCCGATCCCCCCTACAT
125 GCCGGGTACCGGCCCGATCCCCCCTACAT
* ** * * * *
22161886 GCTGTCGATCTTACTGCCACAACCCTCGGTTCAGTCCAATATTAGA-TTGGGAATGAACTTCATA
1 GCTGTCGGTCTCGCTGCCACAACCCTCGG-TC---CCAGTCTTAGACAT-GGAATGAACTCCATA
* * * * * * *
22161950 TGCCTATGTCAACCTACGAAATGAGCGTGCGGGCACTGAGCCAGCCGGAGAGGCATAATGC-GTA
61 TGCCTA-GCCAACCCATGAAATGAGCGTGCGAGCACTCAGCCAGCCGGAGAGGCAGAATGCACT-
* * * *
22162014 AGCCGAGG-ATCGGCTCGATCCCCCTCTGCGT
124 AGCCG-GGTACCGGCCCGATCCCCC-CTACAT
* *
22162045 GCTGTCGGTCTCGCTACCACAACCCTCGGTCCC-GTCTTAGACATGGAATGAACTCCCTATGCCT
1 GCTGTCGGTCTCGCTGCCACAACCCTCGGTCCCAGTCTTAGACATGGAATGAACTCCATATGCCT
22162109 GAGCCAACCCATGAAAT
66 -AGCCAACCCATGAAAT
22162126 AGGCTTACGG
Statistics
Matches: 188, Mismatches: 40, Indels: 28
0.73 0.16 0.11
Matches are distributed among these distances:
154 36 0.19
155 4 0.02
157 3 0.02
158 109 0.58
159 34 0.18
160 1 0.01
162 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.21
Consensus pattern (153 bp):
GCTGTCGGTCTCGCTGCCACAACCCTCGGTCCCAGTCTTAGACATGGAATGAACTCCATATGCCT
AGCCAACCCATGAAATGAGCGTGCGAGCACTCAGCCAGCCGGAGAGGCAGAATGCACTAGCCGGG
TACCGGCCCGATCCCCCCTACAT
Found at i:22162224 original size:667 final size:662
Alignment explanation
Indices: 22161098--22163744 Score: 2189
Period size: 696 Copynumber: 3.9 Consensus size: 662
22161088 AACTCTGTAT
* * * *
22161098 GCTTAGACATGGAATGATCTCCGTATGCCTAAGCTAACCCATGAAACGAGCATGC-GGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * **
22161162 CTGGTCGGAGAGGCAGAATGCGCAAGCCGAGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCCT
66 C-GGTCGGAGAGGTAGAATGCGCAAGCCGGGACCGGCCCGGTCCCCCCTGCATGCTGTCGATCCT
* * * * * * * *
22161227 GTTGTTGCAAACCTTGGTCCAGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCATA
130 GCTGTCGCAACCCTCGGTTCAGTCCAATCTTAGATTGGGAATGAACTTCGTATGCCTAAGTCA-A
* * * * *
22161291 CCACCAAACGAGCGTTCGGGCGCTGAG-TAGGCCGAAGAGGCATAATGCGCAAGCCAAGGATCGG
194 CCACGAAACGAGCGTTCGGGCGCTGAGCCA-GCCGGAGAGGCATAATGCGTAAGCCGAGGATCGG
* * * *
22161355 CTCGATCCCCCTCTACGTACTGTCGGTC-CTGCTGCCACAAACCTCAGT-CCGATTGGGGCTTAG
258 CTCGATCCCCCTCTGCGTGCTGTCGGTCTC-GCTGCCACAACCCTCGGTCCCG--T----CTTAG
* * * * *
22161418 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACAGGTGCTCAACCGGTC
316 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-AGGCTTACGGGCGCTCAGCCGGTC
* * * **
22161483 GGAGAGGCAGAATGCGCAAGCCAGGGATAGGCCC-AGTCCCTCCTGCGTCCTGTCGATCCTGCTG
380 GGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGA-TCCCCCCTGCGTGCTACCGATCCTGCTG
* *
22161547 TCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTGGGGATG
444 TCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATG
**
22161612 AACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTCAGTCGATCGGAGAGGCAT
509 AACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAGTCGATCGGAGAGGCAT
** * *
22161677 GATGCATATACCGAGGATCAGCCCGGTCCCCCTCTATGTGCTTTCGATCCCGCTGTCGGTCCTGC
574 GATGCGCATACCGGGGATCAGCCCGGTCCCCCTCT-TGTGCTGTCGATCCCGCTGTCGGTCCTGC
22161742 TGCCACAACCCTCGGTCCGGCTAGG
638 TGCCACAACCCTCGGTCCGGCTAGG
* * *
22161767 GCTTAGACATGGAATAAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
22161832 TCAGTCGGGGAGGTAGAATGCACTAGCCGGGTACCGGCCCGATCCCCCCTACATGCTGTCGATCT
66 -CGGTCGGAGAGGTAGAATGCGCAAGCCGGG-ACCGGCCCGGTCCCCCCTGCATGCTGTCGATCC
* * * * * *
22161897 TACTGCCACAACCCTCGGTTCAGTCCAATATTAGATTGGGAATGAACTTCATATGCCTATGTCAA
129 TGCTGTCGCAACCCTCGGTTCAGTCCAATCTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAA
* * *
22161962 CCTACGAAATGAGCGTGCGGGCACTGAGCCAGCCGGAGAGGCATAATGCGTAAGCCGAGGATCGG
194 CC-ACGAAACGAGCGTTCGGGCGCTGAGCCAGCCGGAGAGGCATAATGCGTAAGCCGAGGATCGG
*
22162027 CTCGATCCCCCTCTGCGTGCTGTCGGTCTCGCTACCACAACCCTCGGTCCCGTCTTAGACATGGA
258 CTCGATCCCCCTCTGCGTGCTGTCGGTCTCGCTGCCACAACCCTCGGTCCCGTCTTAGACATGGA
* *
22162092 ATGAACTCCCTATGCCTGAGCCAACCCATGAAATAGGCTTACGGGCGCTCAGCCGATCGGAGAGG
323 ATGAACTCCCTATGCCTAAGCCAACCCATGAAA-AGGCTTACGGGCGCTCAGCCGGTCGGAGAGG
* * * * * * ** *
22162157 TAAAATGTGCAAGTCAGGGATCGGCCCGATCCCCCCTGCGGGCTACCGATCCTGTTACCGTAACC
387 CAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACC
* * ** * *
22162222 CTCGGTTCAATCCGATCTTAGACTGGGAATGAACTCTATATCCTTAGGCTGGGGATGAACTCCGT
452 CTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGT
* * * * *
22162287 ATGCCTAAGTCAACTCACAAAATGGGCATGCGAGGCTTAGCCATCCGGAAAGGCCGGTCGGAGAG
517 ATGCCTAAGTCAACCCACAAAATGAGCGTGCG-GGC--A--C-T-C----A-GTCGATCGGAGAG
* * * ** *
22162352 GCA-GAATGTGCATGCCGGGGATCAGCCCGGTCCTCC-CTTGCATGCTGTCGATCTTGTTG-CTG
570 GCATG-ATGCGCATACCGGGGATCAGCCCGGTCCCCCTCTTG--TGCTGTCGATCCCGCTGTC-G
** **
22162414 GTCCTGCTATCGTAACCCTCGATCCGGTCCGATCTTAGACTGGAAATGAACTCCGTG
631 GTCCTGCTGCCACAA-CC-C--T-CGGTCCG------G-C------T--A----G-G
* *
22162471 TGCTTAGACATGGAATG-ACTCCGTATGCCTAAGCGAACCCAAT-AACCGAGCGTGCGGGCGCTC
1 -GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC-ATGAAACGAGCGTGCGGGCGCTC
* * * ** * *
22162534 GGCCGGTTGGAGAGGTAGAATGCGCAAGTCGGGGACCAACCTGGT-CCCCCTGCATACTGTCGAT
64 AG-CGGTCGGAGAGGTAGAATGCGCAAG-CCGGGACCGGCCCGGTCCCCCCTGCATGCTGTCGAT
*
22162598 CCTGCTGTCGCAACCCTCGG-TCCGAT-CAGATCTTAGATTGGGAATGAAC-TCTGTATGCCTAA
127 CCTGCTGTCGCAACCCTCGGTTCAG-TCCA-ATCTTAGATTGGGAATGAACTTC-GTATGCCTAA
* * * *
22162660 GTCAACCCATGAAACGAGCATTCGGGCGCTGAACC-GATCGGAGAGGCATAATGCGTAAGCCGAG
189 GTCAA-CCACGAAACGAGCGTTCGGGCGCTGAGCCAG-CCGGAGAGGCATAATGCGTAAGCCGAG
* * * ** * *
22162724 GATCGGCCCGATCGCCCTCTGCATGCTACCGGTCTTGCTGCCACAACCCTCGGTCGCCTGGGGCT
252 GATCGGCTCGATCCCCCTCTGCGTGCTGTCGGTCTCGCTGCCACAACCCTCGGTC-CC---GTCT
** ** * * * *
22162789 TAGACATGGAATGAACTCCCTATGCCTAAGCCAA-AAAACAAAACGGGTGTGCGGGCACTCAGCT
313 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAA-GGCT-TACGGGCGCTCAGCC
* * * *
22162853 GGTCGGAGAGGCAGAATGCACAAGCCAGGGATCTGCCCGGTCCCCCCTGCGTGCCACCGATCCTG
376 GGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCCTG
*
22162918 CTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGG
441 CTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
* * ** *
22162983 ATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGTGTACGGGTGCTCAATC-AGTC-GAGAG
506 ATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAGTCGA-TCGGAGAG
* * * * *
22163046 GCATAATGCGCA-AGCCGGGGATCTGCCCAGTCCCCCTCTGCGTGCTGTCAATCCCGCTGTCGGT
570 GCATGATGCGCATA-CCGGGGATCAGCCCGGTCCCCCTCT-TGTGCTGTCGATCCCGCTGTCGGT
* * * *
22163110 CCTGTTGCCACAACCCTCGGTTCGACTGGG
633 CCTGCTGCCACAACCCTCGGTCCGGCTAGG
* * * *
22163140 GCTTAGAGATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCCG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * ** * * * ** * *
22163205 CCAGCCAGAGAGGCAAAATGCATAAGCTGGGGATCTGCTTGGTCCCTCCTGCATGCTGCCGATCC
66 -CGGTCGGAGAGGTAGAATGCGCAAGC-CGGGACCGGCCCGGTCCCCCCTGCATGCTGTCGATCC
* * * *
22163270 TGCTGTCACAACCATCGGTCCAGTTCGATCTTGGATTGGGAATTAACTCCTTATGCTTAGACTGG
129 TGCTGTCGCAACC--C--T-C-G---G---TT-CA----G-------TCC-AAT-CTTAGATTGG
* * * * * * *
22163335 GGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTTCAGGCGCTGAGTC-GATCGGAG
168 GAATGAACTTCGTATGCCTAAGTCAA-CCACGAAACGAGCGTTCGGGCGCTGAGCCAG-CCGGAG
* * * * * *
22163399 AGGCATAATGCGCAAGCTGAGGATCAG-TCCGGTCACCCTCTGCGTGCTGTCGATC-CTGCTGCC
231 AGGCATAATGCGTAAGCCGAGGATCGGCT-CGATCCCCCTCTGCGTGCTGTCGGTCTC-GCTGCC
** * ***
22163462 ACAACCCTCGGTTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATAAATGAA
294 ACAACCCTCGG-T--C-CCGTCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
* * * * ** * * * *
22163527 ACTGG-TGTGCAGGTGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCC-GAGGATCGGCTCGGT
355 A-AGGCT-TACGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAG-GGATCGGCCCGAT
* * * * *
22163590 CCCCCCTGCGTGCTATCGATCCTGTTG-CTGCAACCCTTGATCCGATTCGATCTTAGACTGGGAA
417 CCCCCCTGCGTGCTACCGATCCTGCTGTC-GCAACCCTCGGTCCGATCCGATCTTAGACTGGGAA
* * * *
22163654 TGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGACCGT
481 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGT
* * *
22163719 G-TGGCTGCTCAGCCGATCGGAGAGGC
546 GCGGGC-ACTCAGTCGATCGGAGAGGC
22163745 CGGTCGGAGA
Statistics
Matches: 1589, Mismatches: 275, Indels: 200
0.77 0.13 0.10
Matches are distributed among these distances:
667 202 0.13
668 21 0.01
669 121 0.08
670 62 0.04
671 58 0.04
672 118 0.07
673 6 0.00
674 2 0.00
675 1 0.00
676 2 0.00
677 2 0.00
678 5 0.00
679 65 0.04
680 2 0.00
681 1 0.00
682 1 0.00
683 2 0.00
684 7 0.00
688 1 0.00
689 6 0.00
690 2 0.00
691 1 0.00
692 1 0.00
693 2 0.00
694 58 0.04
695 13 0.01
696 335 0.21
697 19 0.01
699 2 0.00
700 1 0.00
701 1 0.00
702 9 0.01
703 162 0.10
704 72 0.05
705 22 0.01
706 9 0.01
707 195 0.12
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (662 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CGGTCGGAGAGGTAGAATGCGCAAGCCGGGACCGGCCCGGTCCCCCCTGCATGCTGTCGATCCTG
CTGTCGCAACCCTCGGTTCAGTCCAATCTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACC
ACGAAACGAGCGTTCGGGCGCTGAGCCAGCCGGAGAGGCATAATGCGTAAGCCGAGGATCGGCTC
GATCCCCCTCTGCGTGCTGTCGGTCTCGCTGCCACAACCCTCGGTCCCGTCTTAGACATGGAATG
AACTCCCTATGCCTAAGCCAACCCATGAAAAGGCTTACGGGCGCTCAGCCGGTCGGAGAGGCAGA
ATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCG
GTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGC
CTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAGTCGATCGGAGAGGCATGATGCGCATACC
GGGGATCAGCCCGGTCCCCCTCTTGTGCTGTCGATCCCGCTGTCGGTCCTGCTGCCACAACCCTC
GGTCCGGCTAGG
Found at i:22162971 original size:158 final size:159
Alignment explanation
Indices: 22162594--22162971 Score: 365
Period size: 158 Copynumber: 2.4 Consensus size: 159
22162584 TGCATACTGT
* *
22162594 CGATCCTGCTGTCGCAACCCTCGGTCCGATCAGATCTTAGATTGGGAATGAAC-TCTGTATGCCT
1 CGATCCTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTC-GTATGCCT
* *** ** * * * * **
22162658 AAGTCAACCCATGAAACGAGCATTCGGGCGCTGAACCGATCGGAGAGGCATAATGCGTAAGCCGA
65 AAGCCAAAAAACAAAACGAGCATGCGGGCACTCAACCGATCGGAGAGGCAGAATGCACAAGCCGA
* *
22162723 GGATCGGCCCGATCGCCCTCTGCATGCTAC
130 GGATCGGCCCGATCGCCCCCTGCATGCCAC
* * * * ** * *
22162753 CGGTCTTGCTGCCACAACCCTCGGT-CG--CCTGGGGCTTAGACAT-GGAATGAACTCCCTATGC
1 CGATCCTGCTGTCGCAACCCTCGGTCCGATCC--GATCTTAGAC-TGGGAATGAACTTCGTATGC
* ** * * *
22162814 CTAAGCCAAAAAACAAAACGGGTGTGCGGGCACTCAGCTGGTCGGAGAGGCAGAATGCACAAGCC
63 CTAAGCCAAAAAACAAAACGAGCATGCGGGCACTCAACCGATCGGAGAGGCAGAATGCACAAGCC
* * *
22162879 -AGGGATCTGCCCGGTC-CCCCCTGCGTGCCAC
128 GA-GGATCGGCCCGATCGCCCCCTGCATGCCAC
22162910 CGATCCTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGC
1 CGATCCTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGC
22162972 TTAGACTGGG
Statistics
Matches: 169, Mismatches: 41, Indels: 19
0.74 0.18 0.08
Matches are distributed among these distances:
156 1 0.01
157 35 0.21
158 108 0.64
159 23 0.14
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
CGATCCTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTA
AGCCAAAAAACAAAACGAGCATGCGGGCACTCAACCGATCGGAGAGGCAGAATGCACAAGCCGAG
GATCGGCCCGATCGCCCCCTGCATGCCAC
Found at i:22162981 original size:26 final size:26
Alignment explanation
Indices: 22162945--22162997 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22162935 CCGATCCGAT
*
22162945 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22162971 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22162997 C
1 C
22162998 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22163641 original size:342 final size:342
Alignment explanation
Indices: 22162629--22163711 Score: 1260
Period size: 342 Copynumber: 3.1 Consensus size: 342
22162619 CCGATCAGAT
* * ** * * *
22162629 CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCATTCGGGCGCTGAAC
1 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAAT
* * * * * ** * *
22162694 CGATCGGAGAGGCATAATGCGTAAGCCGAGGATCGGCCCGATCGCCCTCTGCATGCTACCGGTCT
66 CGATCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCACCCTCTGCGTGCTGTCGATCC
* *
22162759 TGCTGCCACAACCCTCGGTCGCCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAA
131 TGCTGCCACAACCCTCGGTTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAA
* * * ** *
22162824 AAACAAAACGGGTGTGCGGGCACTCAGCTGGTCGGAGAGGCAGAATGCACAAGCC-AGGGATCTG
196 AAACGAAACGGGTGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCCGA-GGATCTG
* * *
22162888 CCCGGTCCCCCCTGCGTGCCACCGATCCTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACT
260 CTCGGTCCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCGGTCCGATTCGATCTTAGACT
*
22162953 GGGAATGAACTTCGTATG
325 GGGAATGAACTCCGTATG
* * * * * * *
22162971 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGTGTACGGGTGCTCAAT
1 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAAT
* * * * *
22163036 C-AGTC-GAGAGGCATAATGCGCAAGCCGGGGATCTGCCCAGTCCCCCTCTGCGTGCTGTCAATC
66 CGA-TCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCACCCTCTGCGTGCTGTCGAT-
* *
22163099 CCGCTGTCGGTCCTGTTGCCACAACCCTCGGTTCGACTGGGGCTTAGAGATGGAATGAACTCCGT
129 -C-C--T--G--C---TGCCACAACCCTCGGTT-GACTGGGGCTTAGACATGGAATGAACTCCCT
*** * * * *
22163164 ATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCCGCC-AGCCAGAGAGGCAAAATGCAT
182 ATGCCTAAGCCAAAAAACGAAACGGGTGTGCGGGCGCTCAGCCGA-CCAGAGAGGCAGAATGCAC
* * * * * * * *
22163228 AAGCTGGGGATCTGCTTGGTCCCTCCTGCATGCTGCCGATCCTGCTGTCACAACCATCGGTCC-A
246 AAGCCGAGGATCTGCTCGGTCCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCGGTCCGA
* * * *
22163292 GTTCGATCTTGGATTGGGAATTAACTCCTTATG
311 -TTCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
22163325 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTTCAGGCGCTGAGT
1 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAAT
* *
22163390 CGATCGGAGAGGCATAATGCGCAAGCTGAGGATCAGTCCGGTCACCCTCTGCGTGCTGTCGATCC
66 CGATCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCACCCTCTGCGTGCTGTCGATCC
* *
22163455 TGCTGCCACAACCCTCGGTTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAT
131 TGCTGCCACAACCCTCGGTTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAA
* * * * *
22163520 AAATGAAACTGGTGTGCAGGTGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGGC
196 AAACGAAACGGGTGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCTGC
* * * *
22163585 TCGGTCCCCCCTGCGTGCTATCGATCCTGTTG-CTGCAACCCTTGATCCGATTCGATCTTAGACT
261 TCGGTCCCCCCTGCGTGCTACCGATCCTGCTGTC-GCAACCCTCGGTCCGATTCGATCTTAGACT
22163649 GGGAATGAACTCCGTATG
325 GGGAATGAACTCCGTATG
*
22163667 CTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCCACGAAA
1 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAA
22163712 TGACCGTGTG
Statistics
Matches: 612, Mismatches: 107, Indels: 44
0.80 0.14 0.06
Matches are distributed among these distances:
341 48 0.08
342 254 0.42
343 20 0.03
346 2 0.00
348 2 0.00
350 2 0.00
352 1 0.00
353 18 0.03
354 214 0.35
355 51 0.08
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (342 bp):
CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAAT
CGATCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCACCCTCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAA
AAACGAAACGGGTGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCTGC
TCGGTCCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCGGTCCGATTCGATCTTAGACTG
GGAATGAACTCCGTATG
Found at i:22163670 original size:26 final size:26
Alignment explanation
Indices: 22163641--22163693 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22163631 CCGATTCGAT
*
22163641 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCATATG
22163667 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
22163693 C
1 C
22163694 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:22164451 original size:159 final size:158
Alignment explanation
Indices: 22164009--22164451 Score: 405
Period size: 157 Copynumber: 2.8 Consensus size: 158
22163999 GATCTCGCTG
* *
22164009 CCGATCCTGTTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACT-CCATATGCC
1 CCGATCCTGCTGCCACAACCCTCTGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCA-ATGCC
* * * * * *
22164073 TAAGCCAACCCACGAAAGGAGCGTACGGGCGCTCAGTCGATCAGAGAGGCAGAATGCATAAG-TC
65 TAAGCCAACCCATGAAAGGAGCGTACGAGCACTCAGTCGGTCGGAGAGGCAGAATGCACAAGCTC
* * *
22164137 GGGGATCGGTCCGGTCCCCCTGCGTGCTG
130 GGGGATCGCTCCGATCCCCCTGCGTGCTA
* * * * ** ** ** *
22164166 TCGATACTGCTACCACAACCCT-TGGTCCGATCCGATCTTAGAC-TGTGAATGAACTCCGTACGC
1 CCGATCCTGCTGCCACAACCCTCT-GTCCGGTTGGGGCTTAGACATG-GAATGAACTCCCAATGC
* * * * ** * * **
22164229 CTAAGTCAACCCATGAAATGAGCATTCGAGCTTTGAGTCGGTCGGAGAGGCATAATGTGCAAGCT
64 CTAAGCCAACCCATGAAAGGAGCGTACGAGCACTCAGTCGGTCGGAGAGGCAGAATGCACAAGCT
*
22164294 -GGGGATCGACT-CGATCCCCCTCTGTGTGCTA
129 CGGGGATCG-CTCCGAT-CCCC-CTGCGTGCTA
* *
22164325 CCGGTCCTGCTGTCACAACCCTCTGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCAATGCCT
1 CCGATCCTGCTGCCACAACCCTCTGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCAATGCCT
* * * * * *
22164390 AAGCCAACCCATGAAACGGA-CGTGCGTGCACTCAATCGGCCGGAAAGGTAGAATGCACAAGC
66 AAGCCAACCCATGAAA-GGAGCGTACGAGCACTCAGTCGGTCGGAGAGGCAGAATGCACAAGC
22164452 CAGGGTTTGG
Statistics
Matches: 216, Mismatches: 60, Indels: 18
0.73 0.20 0.06
Matches are distributed among these distances:
156 2 0.01
157 103 0.48
158 7 0.03
159 99 0.46
160 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CCGATCCTGCTGCCACAACCCTCTGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCAATGCCT
AAGCCAACCCATGAAAGGAGCGTACGAGCACTCAGTCGGTCGGAGAGGCAGAATGCACAAGCTCG
GGGATCGCTCCGATCCCCCTGCGTGCTA
Found at i:22165277 original size:26 final size:26
Alignment explanation
Indices: 22165240--22165290 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
22165230 GTTCAAACTC
*
22165240 TTAGACTGGGAATGAACTCTGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
22165266 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
22165291 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:22165807 original size:26 final size:26
Alignment explanation
Indices: 22165778--22165830 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22165768 CTGGTCCGAT
22165778 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
22165804 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
22165830 C
1 C
22165831 CATAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22165922 original size:196 final size:196
Alignment explanation
Indices: 22165552--22165931 Score: 422
Period size: 196 Copynumber: 1.9 Consensus size: 196
22165542 GCTCTCGATC
* **
22165552 CTGCTACCGCAACCCTCAATCCAGTTCGATCTTAGACTGGGAATGAACTTTGTATGCTCAGAATG
1 CTGCTACCGCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTCAGAATG
* * * * ** * * * *
22165617 GGGATGAACTTCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGTCGTAG
66 GGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTGCAGAAGCTCAACCAGCCGGAA
* * **
22165682 AGGCAGAATACGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGATCCTACTGTTGGT
131 AGGCAGAATACACAAGCCGGGGACCAACCCAGTCCCCCCTGCGTGCTGTCGATCCTACTGTTGGT
22165747 T
196 T
** ** *
22165748 CTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT
1 CTGCTACCGCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTCAGA-AT
* * *
22165813 -GGAATGAACTCCGTATGCC-ATAGCCAACCCACGAAATGAGCGTGCAGAAGCTCAGCCAGCCGG
65 GGGAATGAACTCCGTACGCCTA-AGCCAACCCACGAAACGAGCGTGCAGAAGCTCAACCAGCCGG
* ** **** * *
22165876 AAAGGCAGAATGCACAAGTTGGGGACCAATTTGGTCCCCTCTGCGTGTTGTCGATC
129 AAAGGCAGAATACACAAGCCGGGGACCAACCCAGTCCCCCCTGCGTGCTGTCGATC
22165932 TTGCTGCCGC
Statistics
Matches: 148, Mismatches: 34, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
195 1 0.01
196 145 0.98
197 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (196 bp):
CTGCTACCGCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTCAGAATG
GGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTGCAGAAGCTCAACCAGCCGGAA
AGGCAGAATACACAAGCCGGGGACCAACCCAGTCCCCCCTGCGTGCTGTCGATCCTACTGTTGGT
T
Found at i:22166330 original size:26 final size:26
Alignment explanation
Indices: 22166292--22166344 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22166282 CCGATCTGAT
** *
22166292 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACACGGAATGAACTCCATATG
*
22166318 CTTAGACACGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCATATG
22166344 C
1 C
22166345 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCATATG
Found at i:22166664 original size:26 final size:26
Alignment explanation
Indices: 22166635--22166686 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
22166625 CGGTCTGATT
*
22166635 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCAGTATGC
*
22166661 TTAGACTGGGGATGAACTCAGTATGC
1 TTAGACTGGGAATGAACTCAGTATGC
22166687 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCAGTATGC
Found at i:22167237 original size:159 final size:159
Alignment explanation
Indices: 22166823--22167261 Score: 402
Period size: 159 Copynumber: 2.8 Consensus size: 159
22166813 CTGATTGGAG
* * * **
22166823 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACACACAAAACAAGCGTACGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAAC
* * *
22166888 CGGCCGGAGAGGCAAAATGC-ACAAGCTGGGGATCGGCACGATCCCGCCCTGTATGCTGTCAATC
66 CGGCCGGAGAGGCAAAATGCGA-AAGCTGGGGATCGGCCCAATCCCGCCCTGCATGCTGTCAATC
* * * * *
22166952 CTACTACCGCAACCCTTAGTCCGGTCTGAT
130 CCACTACCACAACCCTCAGTCCAGTCTGAC
* * * * * * * *
22166982 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATAAGCGTGTGGGTGCTGAA
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAA
* * * * * **
22167046 CCGGCCGGAGAGGCATAATACGCAAGTTGGGGATCGGCCCAATCCC-CCTCTGCGTGCTGTCGGT
65 CCGGCCGGAGAGGCAAAATGCGAAAGCTGGGGATCGGCCCAATCCCGCC-CTGCATGCTGTCAAT
* * * *
22167110 CCCGCTGCCACAACCCTCGGTCCAG-CTAGGC
129 CCCACTACCACAACCCTCAGTCCAGTCT-GAC
* * ** *
22167141 CTTAGACATGAAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAAC
* * * * * ** *
22167206 CGACCAGAGAGGCAGAATGCGAAAGCCGGGGATTGGCCTGATCCC-TCCTGCATGCT
66 CGGCCGGAGAGGCAAAATGCGAAAGCTGGGGATCGGCCCAATCCCGCCCTGCATGCT
22167262 ACCGATCTTG
Statistics
Matches: 219, Mismatches: 56, Indels: 11
0.77 0.20 0.04
Matches are distributed among these distances:
158 13 0.06
159 205 0.94
160 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAAC
CGGCCGGAGAGGCAAAATGCGAAAGCTGGGGATCGGCCCAATCCCGCCCTGCATGCTGTCAATCC
CACTACCACAACCCTCAGTCCAGTCTGAC
Found at i:22167784 original size:157 final size:157
Alignment explanation
Indices: 22167509--22167800 Score: 410
Period size: 157 Copynumber: 1.9 Consensus size: 157
22167499 CTGGCTGGGG
* * * *
22167509 CTTAGACATGGAATGAACTCCGTTTGCCTAAGCTAACCCACAAAACGAGCGTGCGGGCGCACAGC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCTAACCCACAAAACGAGCGTGCGAGCACACAGC
* *
22167574 CGATCGGAGAGGCAAAATACGCAAGCCGGGGATCGACCCGGTCCCCCTACGTGCTGTCGATCCTG
66 CGATCGGAGAGGCAAAATACGCAAGCCGGAGATCGACCCGGTCCCCCTACGTGCTGCCGATCCTG
22167639 TTGCCGTAACCCTCAGTCTGGTCCAAT
131 TTGCCGTAACCCTCAGTCTGGTCCAAT
* * *
22167666 CTTAGACGGGGAATGAACTCCGTATGCCTAAG-TCAACCCACGAAAC-AGGCGTGC-AGCACTCA
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCT-AACCCACAAAACGA-GCGTGCGAGCACACA
* * * * *
22167728 GCCGGTCGGAGAGGTAGAATACGCAAGCTGGAGATCGACCCGGTCCCCTCTGCGTGCTGCCGATC
64 GCCGATCGGAGAGGCAAAATACGCAAGCCGGAGATCGACCCGGTCCCC-CTACGTGCTGCCGATC
22167793 CTGTTGCC
128 CTGTTGCC
22167801 CAACACTCGA
Statistics
Matches: 118, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
156 50 0.42
157 68 0.58
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
CTTAGACAGGGAATGAACTCCGTATGCCTAAGCTAACCCACAAAACGAGCGTGCGAGCACACAGC
CGATCGGAGAGGCAAAATACGCAAGCCGGAGATCGACCCGGTCCCCCTACGTGCTGCCGATCCTG
TTGCCGTAACCCTCAGTCTGGTCCAAT
Found at i:22167863 original size:26 final size:26
Alignment explanation
Indices: 22167827--22167879 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22167817 TCGATCCGAT
22167827 CTTAGACTGGGAATGAAC-CTCGTATG
1 CTTAGACTGGGAATGAACTC-CGTATG
*
22167853 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22167879 C
1 C
22167880 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22168037 original size:183 final size:184
Alignment explanation
Indices: 22167666--22168112 Score: 557
Period size: 183 Copynumber: 2.4 Consensus size: 184
22167656 CTGGTCCAAT
* * *
22167666 CTTAGAC-GGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAGGCGTGC-AGCACTCAG
1 CTTAGACTGGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAAGA-GCGTACGAGCGCTCAG
* * *
22167729 CCGGTCGGAGAGGTAGAATACGCAAGCTGGAGATCGACCCGGTCCCCTCTGCGTGCTGCCGATCC
64 CCGCT-GGAGAGGTAGAATACGCAAGCCGGAGATCGAACCGGTCCCCTCTGCGTGCTGCCGATCC
* *
22167794 TGTTGCCCAACACTCGATCCGGTTCGATCCGATCTTAGACTGGGAATGAACCTCGTATG
128 TGCTGCCCAACACTCGA--CGGTCCGATCCGATCTTAGACTGGGAATGAACCTCGTATG
* * * *
22167853 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAACACATGAAATGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA-GAGCGTACGAGCGCTCAGC
* * * * *
22167918 CAGCTGGAGAGGTAGTATGCGTAAGCC-GAGGATCGAACCGGTCCCCT-TGCGTGTTGTCGATCC
65 C-GCTGGAGAGGTAGAATACGCAAGCCGGA-GATCGAACCGGTCCCCTCTGCGTGCTGCCGATCC
* *
22167981 TGCTGTCGCAAC-C-CG-CGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATG
128 TGCTG-CCCAACACTCGACGGTCCGATCCGATCTTAGACTGGGAATGAACCTCGTATG
*
22168036 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTACGAGCGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA-GAGCGTACGAGCGCTCAG-
*
22168101 CTGCTGGAGAGG
64 CCGCTGGAGAGG
22168113 CTGACCGAAG
Statistics
Matches: 228, Mismatches: 25, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
183 107 0.47
184 1 0.00
186 2 0.01
187 63 0.28
188 53 0.23
189 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (184 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAGAGCGTACGAGCGCTCAGCC
GCTGGAGAGGTAGAATACGCAAGCCGGAGATCGAACCGGTCCCCTCTGCGTGCTGCCGATCCTGC
TGCCCAACACTCGACGGTCCGATCCGATCTTAGACTGGGAATGAACCTCGTATG
Found at i:22168046 original size:26 final size:26
Alignment explanation
Indices: 22168010--22168062 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22168000 CCGATCCGAT
*
22168010 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22168036 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22168062 C
1 C
22168063 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22168772 original size:158 final size:158
Alignment explanation
Indices: 22168430--22169089 Score: 648
Period size: 158 Copynumber: 4.2 Consensus size: 158
22168420 ACTCCATATA
* * *
22168430 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTTAG
1 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTTAA
* * * * * *
22168494 CCGACCGAAGAGGAAAAATGCACAAGCCGAGGATC-GCTCGCTCCCCCCTGCGTACTGTCAATCC
65 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCAATCC
* * *
22168558 TGCTGCCGCAACCCTCGATACGATCTAAT
130 TGCTGCCGCAACCCTCGATCCGATTTGAT
* * * * *
22168587 CTTAAACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTTAAC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTTAAC
* * * * *
22168652 CGGCCTG-AGAGGTAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCCTGTGTGCTGTCAATCC
66 CGACC-GAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCAATCC
* *
22168716 TGCTACCGCAACCCTCAATCCGATTTGAT
130 TGCTGCCGCAACCCTCGATCCGATTTGAT
* * * ** * * *
22168745 CTTAGACTGGGAATAAACTTTGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGTGC-TAAG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTTAA-
* * * * * *
22168809 CAGGCCGAAAAGGCATAATGCGCAAGCCGGGGATTGGCTCGATCCCCCTCTGCGTGCTG-CAGGT
65 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCC-CTGCGTGCTGTCA-AT
* * * * * * **
22168873 CCCGCTGCCACAACCCTCGGTCTGACTGGGG
128 CCTGCTGCCGCAACCCTCGATCCGATTTGAT
* * * * * * *
22168904 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATTAAAAGGGGCATGCGGGCGCTCA
1 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAACCCA-CAAAACGAGCGTGCGGGCGCTTA
* * * * *
22168968 ACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATC
64 ACCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCAATC
* * *
22169033 CTGCTGCCGTAACCCTCGATCCGGTTCGAT
129 CTGCTGCCGCAACCCTCGATCCGATTTGAT
* *
22169063 CTTAGACTGTGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTTCGTATGC
22169090 TTAGATTGGG
Statistics
Matches: 408, Mismatches: 83, Indels: 22
0.80 0.16 0.04
Matches are distributed among these distances:
156 1 0.00
157 86 0.21
158 144 0.35
159 119 0.29
160 56 0.14
161 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTTAAC
CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCAATCCT
GCTGCCGCAACCCTCGATCCGATTTGAT
Found at i:22169092 original size:26 final size:25
Alignment explanation
Indices: 22169063--22169117 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
22169053 CCGGTTCGAT
22169063 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTG-GAATGAACTCCGTATG
* *
22169089 CTTAGATTGGGATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
22169114 CTTA
1 CTTA
22169118 AGTCAACCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 19 0.70
26 8 0.30
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:22169446 original size:343 final size:343
Alignment explanation
Indices: 22168829--22169493 Score: 926
Period size: 343 Copynumber: 1.9 Consensus size: 343
22168819 AGGCATAATG
* * * * * *
22168829 CGCAAGCCGGGGATTGGCTCGATCCCCCTCTGCGTGCTGCAGGTCCCGCTGCCACAACCCTCGGT
1 CGCAAGCCGAGGATAGGCCCGATACCCCTCTACGTGCTGCAGATCCCGCTGCCACAACCCTCGGT
* * * *
22168894 CTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATTAAAAGGGGCATGC
66 CTGACTGGGGCTTAGACATGGAATGAACTCCCTAGGCCTAAGCCAACCCATCAAAACGGGCATAC
* * * *
22168959 GGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTG
131 GGGCGCTCAACCGACCGGAAAGGCAGAATACGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTG
* ** * * *
22169024 CTGCCGATCCTGCTGCCGTAACCCTCGATCCGGTTCGATCTTAGACTGTGAATGAACTCCGTATG
196 CTGCCGATCCTACTGCCACAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAACTCCGTAAG
* * * * *
22169089 CTTAGATTGGGATGAACTCCGTATGCTTAAGTCAACCGACGAAATGAGCGTGCCGGCGCTCAATC
261 CTTAGATGGGGATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCCGGCGCTCAATC
22169154 AGCCAGAGAGGTAGAATA
326 AGCCAGAGAGGTAGAATA
*
22169172 CGCAAGCCGAGGATAGGCCCGGTACCCCTCTACGTGCTGTC-GATCCCGCTGCCACAACCCTCGG
1 CGCAAGCCGAGGATAGGCCCGATACCCCTCTACGTGCTG-CAGATCCCGCTGCCACAACCCTCGG
* *
22169236 TCT-AGCTGGGGCTTAGACATGGAATGAACTCCCTAGGCCTAAGCCAACCCA-CGAAACGGGCGT
65 TCTGA-CTGGGGCTTAGACATGGAATGAACTCCCTAGGCCTAAGCCAACCCATCAAAACGGGCAT
* * *
22169299 ACGGGCGCTCAACCGACCGGAAAGGCAGAATACGCAAGTCGGGGATCGACCTGGTCCCCCCTGCG
129 ACGGGCGCTCAACCGACCGGAAAGGCAGAATACGCAAGCCGGGGATCGACCCGATCCCCCCTGCG
* * * *
22169364 TTCTGTCGATCCTACTGTCACAACCCTC-AGTCTGA-TCTGATCTTAGACTGGGAATGAACTCCG
194 TGCTGCCGATCCTACTGCCACAACCCTCGA-TCCGATTC-GATCTTAGACTGGGAATGAACTCCG
*
22169427 TAAGCTTAGATGGGGGATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
257 TAAGCTTAGAT-GGGGATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCCGGCGCT
22169492 CA
321 CA
22169494 GCCAACCGGA
Statistics
Matches: 281, Mismatches: 36, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
341 3 0.01
342 125 0.44
343 152 0.54
344 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (343 bp):
CGCAAGCCGAGGATAGGCCCGATACCCCTCTACGTGCTGCAGATCCCGCTGCCACAACCCTCGGT
CTGACTGGGGCTTAGACATGGAATGAACTCCCTAGGCCTAAGCCAACCCATCAAAACGGGCATAC
GGGCGCTCAACCGACCGGAAAGGCAGAATACGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTG
CTGCCGATCCTACTGCCACAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAACTCCGTAAG
CTTAGATGGGGATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCCGGCGCTCAATC
AGCCAGAGAGGTAGAATA
Found at i:22170003 original size:159 final size:159
Alignment explanation
Indices: 22169800--22170229 Score: 460
Period size: 159 Copynumber: 2.7 Consensus size: 159
22169790 GTCGATCCTA
* * * * * ** *
22169800 CTTAGAC-TGGGAATAAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAG
* * * * *
22169864 CTAG-CC-GAAGAGGCATAATGCGCAAGCCT-AGGATTGACCCGATCCCCCTCT-TAATGCTACC
65 C-AGACCAG-AGAGACAGAATGCCCAAG-CTGAGGATCGACCCGATCCCCCTCTGT-ATACTACC
*
22169925 -GATCCCGCTGCCACAACCCTCGATCTGGCTAGGG
126 AG-TCCCGCTGCCACAACCCTCGATCTGACTAGGG
*
22169959 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAGCCACGAAACAAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGC
* * * * * *
22170024 CGACCAGAGAGACAGAATGCCCAAGCTGAGGATCGGCCTGATCCCGCTCTGTGTACTGCCAGTCC
66 AGACCAGAGAGACAGAATGCCCAAGCTGAGGATCGACCCGATCCCCCTCTGTATACTACCAGTCC
* *
22170089 CGCTGCCACAACCCTCGGTCTGACTGGGG
131 CGCTGCCACAACCCTCGATCTGACTAGGG
* * *
22170118 CTTAGACATGGAATGAACTCCCTAGGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTCAAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGC
* * * * * *
22170183 CGGCCAGAGAGGCAGAATGCACAAGC-CAGGGATCGACCCGGTCCCCC
66 AGACCAGAGAGACAGAATGCCCAAGCTGA-GGATCGACCCGATCCCCC
22170230 CTGCGTGCTA
Statistics
Matches: 229, Mismatches: 35, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
158 4 0.02
159 221 0.97
160 4 0.02
ACGTcount: A:0.26, C:0.32, G:0.26, T:0.16
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGC
AGACCAGAGAGACAGAATGCCCAAGCTGAGGATCGACCCGATCCCCCTCTGTATACTACCAGTCC
CGCTGCCACAACCCTCGATCTGACTAGGG
Found at i:22170514 original size:26 final size:26
Alignment explanation
Indices: 22170485--22170537 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22170475 CTGGTCCGAT
*
22170485 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
22170511 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
22170537 C
1 C
22170538 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22171361 original size:26 final size:26
Alignment explanation
Indices: 22171332--22171400 Score: 129
Period size: 26 Copynumber: 2.7 Consensus size: 26
22171322 TCTTAGACTG
*
22171332 GGAATGAACTCCATATGCTTAGGCAT
1 GGAATGAACTCCGTATGCTTAGGCAT
22171358 GGAATGAACTCCGTATGCTTAGGCAT
1 GGAATGAACTCCGTATGCTTAGGCAT
22171384 GGAATGAACTCCGTATG
1 GGAATGAACTCCGTATG
22171401 ACTAAGCCAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGGCAT
Found at i:22171741 original size:26 final size:26
Alignment explanation
Indices: 22171690--22171742 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22171680 CTGGTCTAAT
*
22171690 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCTATATG
*
22171716 CTTAGACTGGGAATGAACT-TCATATG
1 CTTAGACTGGGAAAGAACTCT-ATATG
22171742 C
1 C
22171743 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCTATATG
Found at i:22172657 original size:26 final size:26
Alignment explanation
Indices: 22172628--22172694 Score: 134
Period size: 26 Copynumber: 2.6 Consensus size: 26
22172618 TCTTGGACTA
22172628 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
22172654 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
22172680 GGAATGAACTCCGTA
1 GGAATGAACTCCGTA
22172695 AGCCTAAGCC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.25
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGACAT
Found at i:22173182 original size:26 final size:26
Alignment explanation
Indices: 22173146--22173198 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22173136 CTGGTCCGAT
*
22173146 CTTAGATTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
22173172 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
22173198 C
1 C
22173199 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:22174147 original size:26 final size:26
Alignment explanation
Indices: 22174118--22174170 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22174108 CCGATCTAAT
22174118 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
22174144 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
22174170 C
1 C
22174171 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:22174353 original size:26 final size:26
Alignment explanation
Indices: 22174315--22174367 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22174305 CCGGTCCGAT
*
22174315 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22174341 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22174367 C
1 C
22174368 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22175312 original size:26 final size:26
Alignment explanation
Indices: 22175276--22175328 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22175266 CCGATCCAAT
*
22175276 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
22175302 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22175328 C
1 C
22175329 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22175409 original size:184 final size:184
Alignment explanation
Indices: 22175090--22175436 Score: 430
Period size: 184 Copynumber: 1.9 Consensus size: 184
22175080 CATGGCTCAA
* * * * *
22175090 AATCTTAGACTGGGAATGCATTTCGTATGCTTAGACATGGATGAACTTCGTATGCCTAAGCCAAC
1 AATCTTAGACTAGGAATGAATCTCGTATGCTTAGACAGGGATGAACTCCGTATGCCTAAGCCAAC
* ** * * * * * *
22175155 CCACGGAATGAGTGTGCGGGTGCTTAACCGACCGGAGAGGCAAAATACGCAAGTCGAGGATCGAC
66 CCACGAAACAAGCGTCCAGGCGCTCAACCGACCGGAGAGGCAAAATACACAAGTCGAGGATCGAC
*
22175220 CTGGTCCCCC-CTACGTGCTACCGATCCTACTATCACAACCCTCGATCCGATCC
131 CTGGTCCCCCTCTACGTGCTACCAATCCTACTATCACAACCCTCGATCCGATCC
*
22175273 AATCTTAGACTAGGAATGAA-CTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCA
1 AATCTTAGACTAGGAATGAATCTC-GTATGCTTAGAC-AGGGATGAACTCCGTATGCCTAAGCCA
* * * * *
22175337 ACCCACGAAACAAGCGTCCAGGCGCTCAGCCGATCGGAGAGGCATAATGCACAAGTCGGGGATC-
64 ACCCACGAAACAAGCGTCCAGGCGCTCAACCGACCGGAGAGGCAAAATACACAAGTCGAGGATCG
* * *
22175401 AGCCTGGTCCCCCTCTGCTTGCTGCCAATCCTACTA
129 A-CCTGGTCCCCCTCTACGTGCTACCAATCCTACTA
22175437 CCGATCCTGC
Statistics
Matches: 136, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
182 2 0.01
183 31 0.23
184 85 0.62
185 18 0.13
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.22
Consensus pattern (184 bp):
AATCTTAGACTAGGAATGAATCTCGTATGCTTAGACAGGGATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACAAGCGTCCAGGCGCTCAACCGACCGGAGAGGCAAAATACACAAGTCGAGGATCGAC
CTGGTCCCCCTCTACGTGCTACCAATCCTACTATCACAACCCTCGATCCGATCC
Found at i:22175974 original size:158 final size:156
Alignment explanation
Indices: 22175473--22175974 Score: 421
Period size: 158 Copynumber: 3.2 Consensus size: 156
22175463 CCGACTGGGG
* * * * * *
22175473 CTTAGAATTGGAATAAACTCCGTATGCCTAAGCCAACCCACGTAACGA-GCGTGCGGGCGCTCA-
1 CTTAGACTGGGAATAAACTCCATATGCCTAATCCAACCCACG-AACCAGGCGTGCGGGCACTCAG
* * * * *
22175536 ATCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCC-ATTCCCCCCTACGTGCTGTCGAT
65 CTTG-TCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGA-TCCCCCCTGCGTGCTGTCG-T
*
22175600 -CTTGCTGCCACAACCAC-CAGTCCGGTCCGAT
127 CCTT-CTGCCACAACC-CTC-GACCGGTCCGAT
* * * * * *
22175631 CTTAGACTGGGAATGAACTCCATATGCATAAGT-CAACCCACAAAAC-GAGCGTGGGGGCACTGA
1 CTTAGACTGGGAATAAACTCCATATGCCTAA-TCCAACCCACGAACCAG-GCGTGCGGGCACTCA
* * * * * * *
22175694 GCCTATCGAAGAGGCATAATGCGCAAGTCGGGAATC-AGCCCGATCCCCCTTTGCGTGCTGTCGG
64 GCTTGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGA-CCCGATCCCCC-CTGCGTGCTGTC-G
** * * **
22175758 TCCCGCTGCCACAACCCTCGATCTGG-CTGGGG
126 TCCTTCTGCCACAACCCTCGA-CCGGTC-CGAT
* * * *
22175790 CTTAGACAT-GGAATGAACTCCCTATGCCTAATCCAACCCATGAACCAGGCGTGCAGGCACTCAG
1 CTTAGAC-TGGGAATAAACTCCATATGCCTAATCCAACCCACGAACCAGGCGTGCGGGCACTCAG
* * *
22175854 CTTGCCGGAGAGGCAAAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCAGTCC
65 CTTGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTC-GTCC
* *
22175919 TTCTCCCGCAACCCTCGGACCGGTCCGAT
129 TTCTGCCACAACCCTC-GACCGGTCCGAT
22175948 CTTAGACTGGGAATAAACTCCATATGC
1 CTTAGACTGGGAATAAACTCCATATGC
22175975 TTAGACTGAG
Statistics
Matches: 266, Mismatches: 59, Indels: 38
0.73 0.16 0.10
Matches are distributed among these distances:
157 4 0.02
158 139 0.52
159 118 0.44
160 5 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (156 bp):
CTTAGACTGGGAATAAACTCCATATGCCTAATCCAACCCACGAACCAGGCGTGCGGGCACTCAGC
TTGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGTCCTT
CTGCCACAACCCTCGACCGGTCCGAT
Found at i:22176683 original size:26 final size:26
Alignment explanation
Indices: 22176647--22176699 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22176637 CCGGTCCGAT
* * *
22176647 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATAAACTCCGTATG
*
22176673 CTTAGAATGGGGATAAACTCCGTATG
1 CTTAGAATGGGAATAAACTCCGTATG
22176699 C
1 C
22176700 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATAAACTCCGTATG
Found at i:22178110 original size:26 final size:26
Alignment explanation
Indices: 22178067--22178119 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22178057 GGCTCAAACT
22178067 CTTAGACTGGCAAAGAACTCCGTATG
1 CTTAGACTGGCAAAGAACTCCGTATG
*
22178093 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGCAAAGAACTCCGTATG
22178119 C
1 C
22178120 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGCAAAGAACTCCGTATG
Found at i:22179958 original size:25 final size:24
Alignment explanation
Indices: 22179922--22179970 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
22179912 TTTGATCTTA
*
22179922 GACTGGGAATGAACTATGTATGCTT
1 GACTGGGAATGAACT-CGTATGCTT
*
22179947 GACTGGGGATGAACTCGTATGCTT
1 GACTGGGAATGAACTCGTATGCTT
22179971 AAGTCAACCC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.24, C:0.14, G:0.31, T:0.31
Consensus pattern (24 bp):
GACTGGGAATGAACTCGTATGCTT
Found at i:22180834 original size:26 final size:26
Alignment explanation
Indices: 22180798--22180850 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22180788 TCCGTCCGAT
22180798 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
22180824 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
22180850 C
1 C
22180851 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:22181485 original size:879 final size:880
Alignment explanation
Indices: 22179600--22181752 Score: 2599
Period size: 879 Copynumber: 2.4 Consensus size: 880
22179590 TGCTACTGCA
* * * * *
22179600 ATCTTAGATAGGGAATGAACT-TCGTATGCCTATGTCAACCCATGAAACGAGTGTTCGGGTGCTG
1 ATCTTAGATTGGGAATGAACTCT-GTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGTGCTG
* * * * * *
22179664 AACCAGCCGGAGAGGCATAATGTGCAAGCCAGGGATTGGCCCGGTCCCCCTCTACGTGCTACCGA
65 AGCCA-CCGGAGAGGCATAATGTGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGG
* * * * *
22179729 TCCCGCTGCAATAACCCTT-GGTCCGGTTGGGGCCTAGACTTGGAATTAACTCCCTATGCCTAAG
129 TCCCACTGCAACAA-CCTTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * * * *
22179793 CCAACCCATGAAAC-GGCGTGTGGGAGCTCAGTCGGCTGGAGAGGTAGAATGCGCAAGCTGAGGA
193 CCAACCCATGAAACGGGCGTGTGGGAGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGAGGA
** * * * *
22179857 TCGGCCCAGTCCTTCCTACGTGCTATCGATCCTGCTACAGCAACCCTTGGTCCGGTTTGATCTTA
258 TCGGCCCAGTCCCCCCTGCGTGCTATCGATCTTGCT-CAGCAACCCTCGGTCCGGTCTGATCTTA
* * *
22179922 GACTGGGAATGAACTATGTATGCTT-GACTGGGGATGAACTCGTATGCTTAAGTCAACCCACAAA
322 GACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCGTATGCCTAAGTCAACCCACGAA
* * * *** * *
22179986 ATTAGCGTGTGGGCACTTAGTCGGACCGGAAGAGGTTGGCCGAAAAGGTATAATACATAAGCCAG
387 ATGAGCATGTGGGCACTTAGTCAGACCGGAAGAGGCAAGCAGAAAAGGCATAATACATAAGCCAG
* ** * * *
22180051 GGATCAGCCCAGTCCCCCTCTGCGTGCTACCGATCCCGCTGTTGGTCCTGCTGCCATAACCTTCG
452 GGATCAACCCAGTCCCCCTCTGCGTGCTACCGATCCCGCTGCCGATCCTGCTACCACAACCTTCG
* *
22180116 ATCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCATG
517 ATCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATG
* ** * * * * *
22180181 CAGGTACTCAACTGCTGGAGAGGTTGAATGCGTAAGTCGGGGATCGACCCGGTCCCTCCTGCATG
582 CAGGCACTCAACTGCCAGAGAGGTAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTGCATG
* * * * * * *
22180246 CTACCGATCCTGCTGCTGGTCTTGCTGCTGTAACCCTCGGTTCCGGTCTGATCTTAGGCTGGGAA
647 CTACCGATCCTGCTACCGGTCTTGCTACCGCAACCCTCGGATCCGATCTGATCTTAGGCTGGGAA
* *
22180311 TCAACTCCGTATGCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACAAACGAAACGAGCGT
712 TCAACTCCGTATGCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACAAACAAAACAAGCGT
* * * * * * *
22180376 GCGGGCGCTCAGTCGATCAGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTGTG
777 GCAGGCGCTCAGCCGACCAGAAAGGCAGAATGCGCAAGCTGGGGACCGGCCCGATCCCCCCTGCG
* *** * *
22180441 TGCTATCGATCCTGCTACCCCAACCCTTTTTTTGGTTTG
842 TGCTATCGATCCTGCTACCACAACCCTCAGTTCGGTTCG
* *** * * * *
22180480 ATCTTAGACTACAAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGAGTGCTGA
1 ATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGTGCTGA
* * * * *
22180545 GCCGACTGGAGAGGCATAATGTGCAAGTCGGGGATCAGCCCGATCCCCATCTGCGTGCTGCCGGT
66 GCC-ACCGGAGAGGCATAATGTGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGGT
* * * *
22180610 CCCACTGCAACAACCTTCAGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
130 CCCACTGCAACAACCTTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* *
22180675 AACCCATGAAACGGGCCTGTGGGAGCTCAGCCGACCGGAGAGGCAAAATGCGTAAGCCGAGGATC
195 AACCCATGAAACGGGCGTGTGGGAGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGAGGATC
* * * *
22180740 GGCCCAATCCCCCCTGCATGCTATCGATCTTACGTCAGCAACCCTCGGTCC-GTCCGATCTTAGA
260 GGCCCAGTCCCCCCTGCGTGCTATCGATCTTGC-TCAGCAACCCTCGGTCCGGTCTGATCTTAGA
* *
22180804 CTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTTTGTATGCCTAAGTCAACCCATGAAA
324 CTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAAC-TCGTATGCCTAAGTCAACCCACGAAA
* * * * ***
22180869 TGAGCATGTGGGCA-TTCAGTCAG-TCGG-AGAGGCCAATCAG-AGAGGCATAATGCATAAGTTG
388 TGAGCATGTGGGCACTT-AGTCAGACCGGAAGAGG-CAAGCAGAAAAGGCATAATACATAAGCCA
* ** * *
22180930 GGGATCAACCCGGTCCCTTTCTGCGTGCTACTGATCTCGCTGCCGATCCTGCTACCACAACCTTC
451 GGGATCAACCCAGTCCCCCTCTGCGTGCTACCGATCCCGCTGCCGATCCTGCTACCACAACCTTC
*
22180995 GGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCAT
516 GATCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCAT
* *
22181060 GCGGGCACTCAGCTGCCAGAGAGGTAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTGCAT
581 GCAGGCACTCAACTGCCAGAGAGGTAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTGCAT
** * *
22181125 GCTGTCGATCTTGCTACCGGT-TCTGCTACCGCAACCTTC-GATCCGATCTGATCTTAGGCTGGG
646 GCTACCGATCCTGCTACCGGTCT-TGCTACCGCAACCCTCGGATCCGATCTGATCTTAGGCTGGG
* * * **
22181188 AATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGC
710 AATCAACTCCGTATGCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACAAACAAAACAAGC
* * * * * *
22181253 GTGCAGGCGCTCAGCCGGCCGGAAAGGCAGAATGTGCAAGCTGTGGCCCGGCTCGATCCCCCCTG
775 GTGCAGGCGCTCAGCCGACCAGAAAGGCAGAATGCGCAAGCTGGGGACCGGCCCGATCCCCCCTG
22181318 CGTGCTATCGATCCTGCTACCACAACCCTCAGTTCGGTTCG
840 CGTGCTATCGATCCTGCTACCACAACCCTCAGTTCGGTTCG
* * *
22181359 ATCTTAGATTGGGATTGAACTCTGTATGCCTAAGTCAAACCATGAAAAGAGCGTGCGGGCGCTGA
1 ATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGTGCTGA
* * * *
22181424 GTCCACCGGAGAGGTATAATGTGCAAGCCAGGGATCGGCCTGATCCCCCTCTGCATGCTGCCAGT
66 G-CCACCGGAGAGGCATAATGTGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGGT
* * *
22181489 -CCAGCTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
130 CCCA-CTGCAACAACCTTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
** * ** * * * *
22181553 CAACCCACAAAATGGGCGTGCAGGTGCTCAGTCGGA-CGGAGAGGCAGAATGTGTAAGTCGAGGA
194 CAACCCATGAAACGGGCGTGTGGGAGCTCAG-CCGACCGGAGAGGCAGAATGCGTAAGCCGAGGA
** * *
22181617 TCGATCCGGT-CCCCCTGCGTGCTATCGATCTTGCT-ATCGCAACCCTCAGTCCGGTCTGATCTT
258 TCGGCCCAGTCCCCCCTGCGTGCTATCGATCTTGCTCA--GCAACCCTCGGTCCGGTCTGATCTT
* ** * * * *
22181680 AGACTAGGAATGAACTCCATATGCTTAGATTGGGGATGAAGCCCATATGCCTAAGTCAACCAACG
321 AGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAA-CTCGTATGCCTAAGTCAACCCACG
22181745 AAATGAGC
385 AAATGAGC
22181753 GTGCGGATGC
Statistics
Matches: 1070, Mismatches: 186, Indels: 35
0.83 0.14 0.03
Matches are distributed among these distances:
876 1 0.00
877 1 0.00
878 38 0.04
879 458 0.43
880 425 0.40
881 107 0.10
882 40 0.04
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (880 bp):
ATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGTGCTGA
GCCACCGGAGAGGCATAATGTGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGGTC
CCACTGCAACAACCTTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
ACCCATGAAACGGGCGTGTGGGAGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCG
GCCCAGTCCCCCCTGCGTGCTATCGATCTTGCTCAGCAACCCTCGGTCCGGTCTGATCTTAGACT
GGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCGTATGCCTAAGTCAACCCACGAAATGA
GCATGTGGGCACTTAGTCAGACCGGAAGAGGCAAGCAGAAAAGGCATAATACATAAGCCAGGGAT
CAACCCAGTCCCCCTCTGCGTGCTACCGATCCCGCTGCCGATCCTGCTACCACAACCTTCGATCC
GACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCAGG
CACTCAACTGCCAGAGAGGTAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTGCATGCTAC
CGATCCTGCTACCGGTCTTGCTACCGCAACCCTCGGATCCGATCTGATCTTAGGCTGGGAATCAA
CTCCGTATGCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACAAACAAAACAAGCGTGCAG
GCGCTCAGCCGACCAGAAAGGCAGAATGCGCAAGCTGGGGACCGGCCCGATCCCCCCTGCGTGCT
ATCGATCCTGCTACCACAACCCTCAGTTCGGTTCG
Found at i:22181630 original size:159 final size:156
Alignment explanation
Indices: 22181202--22181703 Score: 417
Period size: 159 Copynumber: 3.2 Consensus size: 156
22181192 AACTTCGTAT
*
22181202 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAA-GAGCGTGCAGGCGCTCAG
* * * * ** * *
22181267 CCGGCCGGAAAGGCAGAATGTGCAAGCTGTGGCCCGGCTCGATCCCCC-CTGCGTGCTATCGATC
65 TCGGACGGAGAGGCAGAATGTGCAAGC-GAGGATCGGC-CGATCCCCCTCTGCATGCTACCGATC
* * *
22181331 CTGCTACCACAACCCTCAGTTCGGTTCGA
128 CAGCTACCACAACCCTCAGTCCGATTCGA
* * * * * * * * *
22181360 TCTTAGA-TTGGGATTGAACTCTGTATGCCTAAGTCAAACCATGAAAAGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA-CAAAAGAGCGTGCAGGCGCTCA
* * * * *
22181424 GTC-CACCGGAGAGGTATAATGTGCAAGCCAGGGATCGGCCTGATCCCCCTCTGCATGCTGCC-A
64 GTCGGA-CGGAGAGGCAGAATGTGCAAGCGA-GGATCGGCC-GATCCCCCTCTGCATGCTACCGA
* * * *
22181487 GTCCAGCTGCCACAACCCTCGGTCCGATTGGG
126 -TCCAGCTACCACAACCCTCAGTCCGATTCGA
* * *
22181519 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAA-GAGCGTGCAGGCGCTCAG
* * * * *
22181584 TCGGACGGAGAGGCAGAATGTGTAAGTCGAGGATCGATCCGGT-CCCC-CTGCGTGCTATCGATC
65 TCGGACGGAGAGGCAGAATGTGCAAG-CGAGGATCG-GCCGATCCCCCTCTGCATGCTACCGATC
** * * *
22181647 TTGCTATCGCAACCCTCAGTCCG-GTCTGA
128 CAGCTACCACAACCCTCAGTCCGATTC-GA
* *
22181676 TCTTAGAC-TAGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
22181704 TTAGATTGGG
Statistics
Matches: 266, Mismatches: 63, Indels: 31
0.74 0.17 0.09
Matches are distributed among these distances:
156 2 0.01
157 55 0.21
158 92 0.35
159 111 0.42
160 6 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAGAGCGTGCAGGCGCTCAGT
CGGACGGAGAGGCAGAATGTGCAAGCGAGGATCGGCCGATCCCCCTCTGCATGCTACCGATCCAG
CTACCACAACCCTCAGTCCGATTCGA
Found at i:22182990 original size:26 final size:26
Alignment explanation
Indices: 22182939--22182994 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
22182929 CTGATCTGAT
**
22182939 CTTAGACTGGGAATGAACTGTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22182965 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
22182991 CTTA
1 CTTA
22182995 AGCCAACCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22183004 original size:195 final size:197
Alignment explanation
Indices: 22182655--22183016 Score: 478
Period size: 195 Copynumber: 1.8 Consensus size: 197
22182645 CTCAACTGGT
** * * * * * *
22182655 CAGAGAGGCAGAATACGCAAGCCAGGGATTGGCTCGGTCCCCCCTGCGTGCTGCCGATCTTGTTC
1 CAGAGAGGCAGAATACGCAAGCCAGGGACCGACCCAGTCCCCCCTACGTGCTGCCGATCCTGCTC
* * *
22182720 CTGCAACCCTCAGTCTAATTTGATCTTAGACAGGGAATGAACTCCGTATGCTTAGACTAGGGATG
66 CTGCAACCCTCAGTCTAATCTGATCTTAGACAGGGAATGAACTCCATATGCTTAGACTAGGAATG
** *
22182785 AACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCATTCAATCGATCGGAGAGGCCG
131 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATGGGCATTCAATCGATCGGAGAGGCCG
22182850 GC
196 GC
* * *
22182852 CAGAGAGGCAGAATACGTAAGCCAGGGACCGACCCAGT-CCCCCTACGT-CTGTCGATCCTGCTG
1 CAGAGAGGCAGAATACGCAAGCCAGGGACCGACCCAGTCCCCCCTACGTGCTGCCGATCCTGCTC
* * * * **
22182915 CTGCCACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTGTATATGCTTAGAC-ATGGAAT
66 CTGCAACCCTCAGTCTAATCTGATCTTAGACAGGGAATGAACTCCATATGCTTAGACTA-GGAAT
*
22182979 GAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGT
130 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT
22183017 CCGGGCGCTC
Statistics
Matches: 140, Mismatches: 24, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
194 1 0.01
195 98 0.70
196 9 0.06
197 32 0.23
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (197 bp):
CAGAGAGGCAGAATACGCAAGCCAGGGACCGACCCAGTCCCCCCTACGTGCTGCCGATCCTGCTC
CTGCAACCCTCAGTCTAATCTGATCTTAGACAGGGAATGAACTCCATATGCTTAGACTAGGAATG
AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATGGGCATTCAATCGATCGGAGAGGCCG
GC
Found at i:22183267 original size:159 final size:159
Alignment explanation
Indices: 22183091--22183467 Score: 357
Period size: 159 Copynumber: 2.4 Consensus size: 159
22183081 GGTGCTATCG
* *
22183091 ATCCTGCTACCACAACCCTTAGTCCGATCT-GATCTTAGACTGGGAATGAACTCCATATGCCTAA
1 ATCCCGCTGCCACAACCCTTAGTCCGATCTAGATCTTAGACTGGGAATGAACTCCATATGCCTAA
* * ** * * ** * *
22183155 GTCAACCCACGAAACGAACGTTCGGGTGCTGAACCGGTTTAAGAGGCATAATGCGTAAACCGAGG
66 GCCAACCCACGAAACGAACGTGCGGGCACTCAACCAGCCTAAGAGGCACAATGCATAAACCGAGG
* * * *
22183220 ATTGACCCGATCCCCCTCTTCGTGCTGTCA
131 ATCGACCCGAT-CCCCTCTGCATGCTGCCA
* * * * ** * *
22183250 ATCCCGCTGCCATAACCCTCAGTCTG-GCTAGGGCTTAGACAT-GGAATGAACTCCCTATGCTTA
1 ATCCCGCTGCCACAACCCTTAGTCCGATCTAGATCTTAGAC-TGGGAATGAACTCCATATGCCTA
** * * * * *
22183313 AGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCCAGCCTGAGAGGCACAATGCATAAGCTGGG
65 AGCCAACCCACGAAACGAACGTGCGGGCACTCAACCAGCCTAAGAGGCACAATGCATAAACCGAG
*
22183378 GATCGACCCGATCCCCTCTGCATGCTGCCG
130 GATCGACCCGATCCCCTCTGCATGCTGCCA
* * * * * * *
22183408 ATCCTGCTGTCGCAACCCTTGGTCCGAT-TCGATCTTAGACTGGTAATAAACTCCATATGC
1 ATCCCGCTGCCACAACCCTTAGTCCGATCTAGATCTTAGACTGGGAATGAACTCCATATGC
22183468 TTAGACTGGG
Statistics
Matches: 168, Mismatches: 46, Indels: 9
0.75 0.21 0.04
Matches are distributed among these distances:
157 1 0.01
158 59 0.35
159 107 0.64
160 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.22
Consensus pattern (159 bp):
ATCCCGCTGCCACAACCCTTAGTCCGATCTAGATCTTAGACTGGGAATGAACTCCATATGCCTAA
GCCAACCCACGAAACGAACGTGCGGGCACTCAACCAGCCTAAGAGGCACAATGCATAAACCGAGG
ATCGACCCGATCCCCTCTGCATGCTGCCA
Found at i:22183485 original size:26 final size:26
Alignment explanation
Indices: 22183441--22183493 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22183431 CCGATTCGAT
*
22183441 CTTAGACTGGTAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* * *
22183467 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
22183493 C
1 C
22183494 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:22184251 original size:159 final size:156
Alignment explanation
Indices: 22183846--22184284 Score: 422
Period size: 159 Copynumber: 2.8 Consensus size: 156
22183836 AACTCTGTAT
* *
22183846 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCAGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAA
* * ** * * * *
22183911 CCGATCGGGGAGGTAGAATGCACAAGTCGGGGACCGATCTGATCCCCCCTGCGTGCTGTCGATCT
66 -CGACCGGAGAGGTAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCT
*
22183976 TGCTACTACAACCCTCGATCTGATCTGA
130 TGC-ACTACAACCCTCGATCTGAGCTGA
* * ** * * * *
22184004 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAAAGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCA
* * * * * * *
22184068 GCCAGCCGAAGAGGCATAATGCGTAAGTCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGGT
65 ACGA-CCGGAGAGGTAGAATGCGTAAGTCGGGGATCGACCCGATCCCCC-CTACGTGCTGTCGAT
* *
22184133 CCCATTGC-C-ACAGCCCTCGAT-TCG-GCTGGG
128 --C-TTGCACTACAACCCTCGATCT-GAGCT-GA
* * *
22184163 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCGTGAAACGGGCGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAA
* * *
22184228 CTGACCGGAGAGGTAGAATGCGTAAGTCGGGGATC-AGCCCGGTCCCTCCTTCGTGCT
66 C-GACCGGAGAGGTAGAATGCGTAAGTCGGGGATCGA-CCCGATCCCCCCTACGTGCT
22184285 ACCGTAACCC
Statistics
Matches: 222, Mismatches: 48, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
157 3 0.01
158 97 0.44
159 114 0.51
160 3 0.01
161 1 0.00
162 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAA
CGACCGGAGAGGTAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCTT
GCACTACAACCCTCGATCTGAGCTGA
Found at i:22185572 original size:26 final size:26
Alignment explanation
Indices: 22185543--22185595 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22185533 CCGATCCAAT
22185543 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
22185569 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
22185595 C
1 C
22185596 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22185830 original size:158 final size:157
Alignment explanation
Indices: 22185569--22186073 Score: 493
Period size: 158 Copynumber: 3.2 Consensus size: 157
22185559 ACTCCGTATG
* * *
22185569 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGTGGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCAGC
*** * * *
22185634 CAGCGGGAGAGGCAGAATGCGCAAGCCGGGGA-CTGGCCCAATCCCCCCTACGTGCTGTCGATCC
66 CA-CTAAAGAGGCAGAATGCGCAAGCCGAGGATC-GGCCCAATCCCCCCTGCATGCTGTCGATCC
* *
22185698 TGCTGCCGCAAACCTCGGTCTGATCTGAT
129 TGCTGCCACAACCCTCGGTCTGATCTGAT
* * ** * *
22185727 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTCCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCAG
* * * ** *
22185791 CCGACTATAGAGCCATAATGCGCAAGCCGAGGATCGGCCCAATCCCTCTTTGCATGCTGTCGGTC
65 CC-ACTAAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCC-CCCTGCATGCTGTCGATC
* * *
22185856 CCGCTGCCACAACCCTCGGTCTG-GCTGAGG
128 CTGCTGCCACAACCCTCGGTCTGATCTGA-T
* * * * * *
22185886 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCGATGAAATG-GACATGTGGGCACTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAG-CGTGTGGGCGCTCAG
* * * **
22185950 CCAATCAAAGAGGCAGAATGCGCAAGCCGAAGATCGGCCCGATCCCCCCTGCATGCTACCGATCC
65 CCACT-AAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCCCCCTGCATGCTGTCGATCC
* * * *
22186015 T-CTTACCTCAACCCTCGATC-CAGTCTGAT
129 TGC-TGCCACAACCCTCGGTCTGA-TCTGAT
22186044 CTTAGAC-TGGGAATGAACTCCGTATGCCTA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTA
22186074 GGCTGGGGAT
Statistics
Matches: 280, Mismatches: 55, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
157 3 0.01
158 152 0.54
159 124 0.44
160 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCAGC
CACTAAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCCCCCTGCATGCTGTCGATCCTG
CTGCCACAACCCTCGGTCTGATCTGAT
Found at i:22186086 original size:26 final size:26
Alignment explanation
Indices: 22186050--22186099 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
22186040 TGATCTTAGA
*
22186050 CTGGGAATGAACTCCGTATGCCTAGG
1 CTGGGAATGAACTCCATATGCCTAGG
*
22186076 CTGGGGATGAACTCCATATGCCTA
1 CTGGGAATGAACTCCATATGCCTA
22186100 AGTCAACCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (26 bp):
CTGGGAATGAACTCCATATGCCTAGG
Found at i:22186981 original size:26 final size:26
Alignment explanation
Indices: 22186943--22186995 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22186933 GGCTCAAACT
**
22186943 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
*
22186969 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
22186995 C
1 C
22186996 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:22187322 original size:26 final size:26
Alignment explanation
Indices: 22187286--22187338 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22187276 CCAGTTCGAT
*
22187286 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
22187312 CTTAGACTGGGGATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
22187338 C
1 C
22187339 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:22187695 original size:26 final size:26
Alignment explanation
Indices: 22187666--22187718 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22187656 CCGATCCGAT
*
22187666 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGCATG
22187692 CTTAGACATGGAATGAACTCCGCATG
1 CTTAGACATGGAATGAACTCCGCATG
22187718 C
1 C
22187719 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGCATG
Found at i:22188621 original size:170 final size:171
Alignment explanation
Indices: 22188297--22188665 Score: 417
Period size: 170 Copynumber: 2.2 Consensus size: 171
22188287 CGTAAGCCGA
* * * * *
22188297 GGATCAGCCCAATCCCCCTCTACGTGCTGTCGATCCCGTTGTCGGTCCTGCTACCGCAACCCTCA
1 GGATCGGCCCGATCCCCCTATGCGTGCTGTCGATCCCGCTGTCGGTCCTGCTACCGCAACCCTCA
* * *
22188362 GCTCAGTTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTG
66 GCTCAGTTGGAGCTTACACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGCG
* * *
22188427 CGGGCGCTCAACCGATCAGAGAGGCAGAATGCACAAGTC-G
131 CGGGCACTCAACCAACCAGAGAGGCAGAATGCACAAGTCAG
* * * *
22188467 AGGATCGGCTCGGTCCCCC-ATGCGTGCTGTCGATCCTGCTG-CTGGTCCTGCTACTGCAACCCT
1 -GGATCGGCCCGATCCCCCTATGCGTGCTGTCGATCCCGCTGTC-GGTCCTGCTACCGCAACCCT
* * * *
22188530 CTG-TCCAGTCT-GATCTTACAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
64 CAGCT-CAGT-TGGAGCTTACACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGA
* * * * **
22188592 GCGCGCGGGCACTGAGCCAACCGGAGAGGCATAATGTGCAAGTCAG
126 GCGCGCGGGCACTCAACCAACCAGAGAGGCAGAATGCACAAGTCAG
*
22188638 GGATCGGCCCGATCCCCCTCTGCGTGCT
1 GGATCGGCCCGATCCCCCTATGCGTGCT
22188666 ACCGGTCCCG
Statistics
Matches: 164, Mismatches: 28, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
169 3 0.02
170 137 0.84
171 24 0.15
ACGTcount: A:0.22, C:0.32, G:0.26, T:0.20
Consensus pattern (171 bp):
GGATCGGCCCGATCCCCCTATGCGTGCTGTCGATCCCGCTGTCGGTCCTGCTACCGCAACCCTCA
GCTCAGTTGGAGCTTACACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGCG
CGGGCACTCAACCAACCAGAGAGGCAGAATGCACAAGTCAG
Found at i:22188905 original size:26 final size:26
Alignment explanation
Indices: 22188861--22188913 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22188851 CCGATCCAAT
*
22188861 CTTAGACTAGGAATAAACTTCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* * *
22188887 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
22188913 C
1 C
22188914 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:22189975 original size:26 final size:26
Alignment explanation
Indices: 22189923--22189976 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
22189913 TCTAGTTGAA
*
22189923 GCTTAGACTGGGAATGAACTCTATAT
1 GCTTAGACTGGGAATGAACTCCATAT
** *
22189949 GCTTAGACTGGGGTTGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCATAT
22189975 GC
1 GC
22189977 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCATAT
Found at i:22192563 original size:158 final size:157
Alignment explanation
Indices: 22192062--22192563 Score: 533
Period size: 158 Copynumber: 3.2 Consensus size: 157
22192052 ACTCCGTGTG
* * *
22192062 CTTAGACATGGAATGAACTTCGTATGCCTAAGCAAACCCATGAAACGAGCGTACAGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
* * *
22192127 CGG-TCGGAGAGGCAGAATGTGCAAGCCGGGGATTGGTCCGGTCCCCCCTACGTGCTGTCGATCC
65 CGGCT-GGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTACGTGCTGCCGATCC
* * *
22192191 TGCTACTGCAACCCTTGGTCTGG-TCTAAA
129 TGCTGCTGCAACCCTCGGTCTGGTTC-GAA
* * * ** * *
22192220 CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCATGAAACGAGCGTGTGGGTGCTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
** * * * * * * *
22192285 CAACCGAAGAGGCATAATGCGCAAGTCGGGGATTGGCCCGGTTCCCCTCTGCGTGCTGCCGGT-C
65 CGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGG-TCCCCCCTACGTGCTGCCGATCC
** * * **
22192349 TCGCTGCCACAACCCTCGGTTTGGTTGGGG
129 T-GCTGCTGCAACCCTCGGTCTGGTTCGAA
* * * * * * *
22192379 CTTAGAGATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCGTCCGGGCACTCAAC
1 CTTAGA-CTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
*
22192444 TGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTACGTGCTGCCGATCCT
65 CGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTACGTGCTGCCGATCCT
* *
22192509 GCTGCTGCAACCCTCGATCTGGTTCGAT
130 GCTGCTGCAACCCTCGGTCTGGTTCGAA
*
22192537 CTTAGACTGGTAATGAACTCTGTATGC
1 CTTAGACTGG-AATGAACTCCGTATGC
22192564 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 63, Indels: 16
0.78 0.18 0.05
Matches are distributed among these distances:
157 4 0.01
158 146 0.53
159 121 0.44
160 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCC
GGCTGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTACGTGCTGCCGATCCTG
CTGCTGCAACCCTCGGTCTGGTTCGAA
Found at i:22192566 original size:26 final size:26
Alignment explanation
Indices: 22192537--22192589 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22192527 CTGGTTCGAT
* *
22192537 CTTAGACTGGTAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22192563 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22192589 C
1 C
22192590 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22196483 original size:158 final size:159
Alignment explanation
Indices: 22196125--22196519 Score: 431
Period size: 158 Copynumber: 2.5 Consensus size: 159
22196115 TGAACTTCGT
* *
22196125 ACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCATAATGCGCAAG-TCGGGGATC
1 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCATAATGCGCAAGCT-GGGGATC
** * ** * * *
22196189 GGCTTGATCCCCCCCTGTGTGCTATCGATCCTGCTGCTACAACCCTCGGTCCAGTCTAATCTTAG
65 GGCCCGATCCCCCTCTGTGTGCTATCGATCCCACTACCACAACCCTCGGTCCAGGCTAATCTTAG
* *
22196254 ACTCGGAATGAACTCCGTATGCATAAGTCA
130 ACTCGGAATGAACTCCCTATGCATAAGCCA
** * * * * * *
22196284 ACTAACAAAACGAACGTGCGGGCGCTGAGCCAACCGAAGAGGCATAATGCGTAAGCTGGGGATCG
1 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCATAATGCGCAAGCTGGGGATCG
* * * *
22196349 GCCCGGTCCCCCTCTGTGTGCTAT-TATCCCACTACCACAACCCTTGGTCC-GGCT-GTGGCTTA
66 GCCCGATCCCCCTCTGTGTGCTATCGATCCCACTACCACAACCCTCGGTCCAGGCTAAT--CTTA
*
22196411 GACAT-GGAATGAACTCCCTATGCCTAAGCCA
129 GAC-TCGGAATGAACTCCCTATGCATAAGCCA
* * * * * * *
22196442 ACCCATGAAACGGGCATGTGGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
1 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCATAATGCGCAAGCTGGGGATCG
22196507 GCCCGATCCCCCT
66 GCCCGATCCCCCT
22196520 GCGTGCTACC
Statistics
Matches: 191, Mismatches: 41, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
156 1 0.01
157 3 0.02
158 112 0.59
159 74 0.39
160 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCATAATGCGCAAGCTGGGGATCG
GCCCGATCCCCCTCTGTGTGCTATCGATCCCACTACCACAACCCTCGGTCCAGGCTAATCTTAGA
CTCGGAATGAACTCCCTATGCATAAGCCA
Found at i:22197129 original size:158 final size:158
Alignment explanation
Indices: 22196754--22197435 Score: 633
Period size: 159 Copynumber: 4.3 Consensus size: 158
22196744 CTTGCTGCCA
** * * *
22196754 CAACCCTCGGTCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCATCCCACA
1 CAACCCTCGGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCAAAGCCAACCCACG
* * * * * * * *
22196817 AAACAAGCCTACGGGCGCTCAGCCCG-CTGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGA
64 AAACGAGCGTGCGGGCGCTCAG-CCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGA
* * *
22196881 TCACCCCCTGCGTGCTGCCGATCCTGTTGCCG
128 TC-CCCCCTGCGTGCTACCGATCCTGCTACCG
** * * * *
22196913 CAACCCTCCATCCGGTCCGATCTTAAATTGGGAATGAACTCCGTATGCCCAAGCCAACCCACGAA
1 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAACCCACGAA
* * * *
22196978 ATGAGCGTGCGGGCGCTCAGTC-AGCCGGAGAGGCAGAATACGCAAGTCAGGGACCGACCCGATC
66 ACGAGCGTGCGGGCGCTCAGCCGA-CCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGATC
* * * *
22197042 CCCCTTGTGTGCTATCGATCCTGCTATCG
130 CCCCCTGCGTGCTACCGATCCTGCTACCG
* * * ** * *
22197071 CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATAAACTCCGTATGCAAAAATCAACCAACAAA
1 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAACCCACGAA
* * * * ** *
22197136 ACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATGCGCAAGTTGGGGATCGGCCC-AGTC
66 ACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGA-TC
* * * * ** *
22197200 CCCCTTTACGTGCTGTCGGA-CCCACTACCA
130 CCCC-CTGCGTGCT-ACCGATCCTGCTACCG
** * *
22197230 CAACCCTCGGTCCGG-CTAGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACG
1 CAACCCTCGGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCAAAGCCAACCCACG
* * * * *
22197293 AAACGGGCGTGTGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGTCAGGGATCTACTCGAT
64 AAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGAT
* *
22197358 CCCCCCTGCGTGCTACCGATCCTGCTGCTG
129 CCCCCCTGCGTGCTACCGATCCTGCTACCG
* * *
22197388 TAACCCTCTGTCCGGTCTGCTCTTAGACTGGGAATGAACTCCGTATGC
1 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
22197436 TTAGACTGGG
Statistics
Matches: 410, Mismatches: 99, Indels: 29
0.76 0.18 0.05
Matches are distributed among these distances:
157 5 0.01
158 181 0.44
159 219 0.53
160 5 0.01
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.18
Consensus pattern (158 bp):
CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAACCCACGAA
ACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGATCC
CCCCTGCGTGCTACCGATCCTGCTACCG
Found at i:22197438 original size:26 final size:26
Alignment explanation
Indices: 22197409--22197461 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22197399 CCGGTCTGCT
22197409 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22197435 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22197461 C
1 C
22197462 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22198050 original size:158 final size:158
Alignment explanation
Indices: 22197756--22198055 Score: 395
Period size: 158 Copynumber: 1.9 Consensus size: 158
22197746 TAGCTGCTGG
* * **
22197756 TCCTGCTGCCGCAACCTTCGGTCCGACCCGATCTTAAACTGGGAATGAACTCCGTATGCCCAAGC
1 TCCTGCTACCGCAACCCTCAATCCGACCCGATCTTAAACTGGGAATGAACTCCGTATGCCCAAGC
* * * * **
22197821 CAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGTGCAAGTCGGGGAC
66 CAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACAGAAGAGGCAGAATGCACAAGTCGGGGAC
*
22197886 CAGCCCGGTCCCTCCTGCGTGCTGTCGA
131 CAGCCCGATCCCTCCTGCGTGCTGTCGA
* * * *
22197914 TCCTGCTACCGCAACCCTCAATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCCTGCTACCGCAACCCTCAATCCGACCCGATCTTAAACTGGGAATGAACTCCGTATGCCCAAGC
* * * *
22197979 CAAGCCACGAAACGAGCGTGCTGGCACTGAGCCGATCAG-AGAGGCATAATGCACAAGTCGGGGA
66 CAACCCACGAAACGAGCGTGCGGGCACTCAGCCGA-CAGAAGAGGCAGAATGCACAAGTCGGGGA
* *
22198043 TCGGCCCGATCCC
130 CCAGCCCGATCCC
22198056 CCTCCGTATG
Statistics
Matches: 120, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
158 118 0.98
159 2 0.02
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (158 bp):
TCCTGCTACCGCAACCCTCAATCCGACCCGATCTTAAACTGGGAATGAACTCCGTATGCCCAAGC
CAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACAGAAGAGGCAGAATGCACAAGTCGGGGAC
CAGCCCGATCCCTCCTGCGTGCTGTCGA
Found at i:22198108 original size:158 final size:158
Alignment explanation
Indices: 22197777--22198148 Score: 385
Period size: 158 Copynumber: 2.4 Consensus size: 158
22197767 CAACCTTCGG
* * * * * *
22197777 TCCGACCCGATCTTAAACTGGGAATGAACTCCGTATGCCCAAGCCAACCCATGAAATGAGCGTGC
1 TCCGAGCCGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC
* * ** * *
22197842 GGGCGCTCAGCCGACCGAAGAGGCAGAATGTGCAAGTCGGGGACCAGCCCGGTCCCTCCTGCGTG
66 GGGCACTCAGCCGACAGAAGAGGCAGAATGCACAAGTCGGGGACCAGCCCGATCCCTCCTCCGTG
* *
22197907 CTGTCGATCCTGCTACCGCAACCCTCAA
131 CTGCCGATCCTGCTACCACAACCCTCAA
* * * *
22197935 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGC
1 TCCGAGCCGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC
* * * * *
22198000 TGGCACTGAGCCGATCAG-AGAGGCATAATGCACAAGTCGGGGATCGGCCCGATCCC-CCTCCGT
66 GGGCACTCAGCCGA-CAGAAGAGGCAGAATGCACAAGTCGGGGACCAGCCCGATCCCTCCTCCG-
* *
22198063 ATGCTGCCGGT-CTCGCTACCACAACCCTCGA
129 -TGCTGCCGATCCT-GCTACCACAACCCTCAA
* * * * * *
22198094 TTCG-GCTGGGCTTAGACAT-GGAATAAACTCCCTATGCCTAAGCCAACCCTCGAAA
1 TCCGAGCCGAGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
22198149 TGGCCGTGCG
Statistics
Matches: 177, Mismatches: 32, Indels: 10
0.81 0.15 0.05
Matches are distributed among these distances:
157 5 0.03
158 143 0.81
159 29 0.16
ACGTcount: A:0.24, C:0.32, G:0.25, T:0.18
Consensus pattern (158 bp):
TCCGAGCCGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC
GGGCACTCAGCCGACAGAAGAGGCAGAATGCACAAGTCGGGGACCAGCCCGATCCCTCCTCCGTG
CTGCCGATCCTGCTACCACAACCCTCAA
Found at i:22198313 original size:26 final size:26
Alignment explanation
Indices: 22198274--22198326 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22198264 CCGGTTTGAT
*
22198274 CTTAGACTGAGAATCAACTCTGTATG
1 CTTAGACTGAGAATCAACTCCGTATG
*
22198300 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATCAACTCCGTATG
22198326 C
1 C
22198327 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATCAACTCCGTATG
Found at i:22199563 original size:26 final size:26
Alignment explanation
Indices: 22199525--22199577 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22199515 GGCTCAAACT
*
22199525 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCCTATG
*
22199551 CTTAGACATGGAATGAACTCCCTATG
1 CTTAGACAGGGAATGAACTCCCTATG
22199577 C
1 C
22199578 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCCTATG
Found at i:22199976 original size:157 final size:156
Alignment explanation
Indices: 22199550--22200014 Score: 544
Period size: 159 Copynumber: 2.9 Consensus size: 156
22199540 AACTCCGTAT
* * * *
22199550 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACCGACGTGCGGGCACTGAG
1 GCTTAG-CATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAA-CGGCGTGCGGGCGCTCAG
* * * * * *
22199615 TCGGCCGAAGAGGCAGAATGGGCAAGCCGAGGATC-AGCCCGGTCCCCTTCTGCGTGCTACCGGT
64 CCGGCCGAAGAGGCAAAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCTCTGCGTGCTGCCGGT
* *
22199679 CCCATTGCCACAACCCTCGGTCTGATTCAA
128 -CCGTTGCCACAACCCTCGGTCTGACTCAA
* * *
22199709 TCTTAG-ATTGGGAATGAACT-CTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTC
1 GCTTAGCA-T-GGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACG-GCGTGCGGGCGCTC
* *
22199772 AGCCGGCCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGG
62 AGCCGGCCGAAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGG
* ***
22199837 TCCGTTGCCACAACCCTCGGTCTGGCTGGG
127 TCCGTTGCCACAACCCTCGGTCTGACTCAA
* *
22199867 GCTTAGTCATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGGCGTGCGGGCGCTCAGC
1 GCTTAG-CATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGCGTGCGGGCGCTCAGC
* * * * *
22199932 CGACAGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCTGGT-CCCC-CTGCGTGCTGCCGATCC
65 CGGCCGAAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGGTCC
*
22199995 TGCTGCCACAACCCTCGGTC
130 -GTTGCCACAACCCTCGGTC
22200015 CGGTCCGATC
Statistics
Matches: 264, Mismatches: 33, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
155 16 0.06
156 22 0.08
157 53 0.20
158 64 0.24
159 107 0.41
160 2 0.01
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.18
Consensus pattern (156 bp):
GCTTAGCATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGCGTGCGGGCGCTCAGCC
GGCCGAAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGGTCCG
TTGCCACAACCCTCGGTCTGACTCAA
Found at i:22200053 original size:26 final size:26
Alignment explanation
Indices: 22200024--22200076 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22200014 CCGGTCCGAT
*
22200024 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCATATG
22200050 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
22200076 C
1 C
22200077 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:22201374 original size:157 final size:157
Alignment explanation
Indices: 22200940--22201397 Score: 506
Period size: 157 Copynumber: 2.9 Consensus size: 157
22200930 TCTTAGATGG
* * * * * * **
22200940 GGAATGAACTCCGTATGCATAAGTCAACCTACGAAACGAGCGTGTGGGCA-TTGAGCCGACCAAA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCACTT-AGCCGACCGGA
* * * * * *
22201004 GAGGCATAATGCGTAAGCCGGGGATCGACTCGGTCCCCCTCTACATGCTGTCGGTCCCGCTACCA
65 GAGGCAGAATGCGCAAG-CGGGGATCGACCCGGTCCCCC-CTGCATGCTGTCGATCCCGCTGCCA
* * *
22201069 CAACCCTCGGTCTGGCTGTGGCATAGACAT
128 TAACCCTCGGTCCGACTGTGGCATAGACAT
* *** * * *
22201099 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAAGCGCTCATCCGACCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCACTTAGCCGACCGGAG
* * * * * * *
22201164 AGGCAGAATGCGCAAGCTGGGGATTGGCCTGGTCCCCCTTGCGTACTGCCGATCCCGCTGCCATA
66 AGGCAGAATGCGCAAGC-GGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCCGCTGCCATA
**
22201229 ACCCTCGGTCCGACTG-GGGTTAGACAT
130 ACCCTCGGTCCGACTGTGGCATAGACAT
*
22201256 GGAATGAACTCCCTGTGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCACTTAGCCGACCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCACTTAGCCGACCGGAG
* ** * *
22201321 AGGCAGAATGCGCAAGTCGAGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCTACTGCCGTT
66 AGGCAGAATGCGCAAG-CGGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCCGCTGCCATA
22201386 ACCCTCGGTCCG
130 ACCCTCGGTCCG
22201398 GTTTCGATCT
Statistics
Matches: 243, Mismatches: 53, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
157 129 0.53
158 35 0.14
159 78 0.32
160 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCACTTAGCCGACCGGAG
AGGCAGAATGCGCAAGCGGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCCGCTGCCATAA
CCCTCGGTCCGACTGTGGCATAGACAT
Found at i:22201435 original size:26 final size:26
Alignment explanation
Indices: 22201406--22201458 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22201396 CGGTTTCGAT
22201406 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
* * *
22201432 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
22201458 C
1 C
22201459 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:22201801 original size:26 final size:26
Alignment explanation
Indices: 22201764--22201816 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22201754 CTGGTCTGGT
*
22201764 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
*
22201790 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
22201816 C
1 C
22201817 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:22201963 original size:184 final size:183
Alignment explanation
Indices: 22201609--22201977 Score: 427
Period size: 184 Copynumber: 2.0 Consensus size: 183
22201599 AACTGGGGCC
* * * *
22201609 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGATGGCACTCAGCTG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGAGGGCACTCAGCCG
* * * * * *
22201674 GCTAGAGAGATAAATGCACAAGCCGGGGATCATCCTGATCCCCCCTGCGTGCTGTCGATCCTGCT
66 GCCAGAAAGACAAATGCACAAGCCGGAGATCAGCCTGATCCCCCCTACGTGCTGTCGATCCTGCT
* * * * *
22201739 GCCGTAACCCTTGGTCTGGTCTGGTCTTAGACTTGGAATGAACTCCATATGCT
131 ACCGCAACCCTCGGTCTGGTCCGATCTTAGACTTGGAATGAACTCCATATGCT
* * **
22201792 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACATACGAAACGAGCGTGCGGGTGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGAGGGCACTCAGCCG
* * ** * ** *
22201857 GCCAGAAAGGCAGAATGCGCAAGCCGGAGATTGGCCTGGTCCCCTTTATGTGCTGTCGATCCTGC
66 GCCAGAAAGACA-AATGCACAAGCCGGAGATCAGCCTGATCCCCCCTACGTGCTGTCGATCCTGC
* * *
22201922 TACTGCAA-CCTCCGGTCTGGTCCGATCTTAGA-TTGGGAATGAACTTCGTATGCT
130 TACCGCAACCCT-CGGTCTGGTCCGATCTTAGACTT-GGAATGAACTCCATATGCT
22201976 TA
1 TA
22201978 AGTCAACCCA
Statistics
Matches: 153, Mismatches: 30, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
183 70 0.46
184 83 0.54
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (183 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGAGGGCACTCAGCCG
GCCAGAAAGACAAATGCACAAGCCGGAGATCAGCCTGATCCCCCCTACGTGCTGTCGATCCTGCT
ACCGCAACCCTCGGTCTGGTCCGATCTTAGACTTGGAATGAACTCCATATGCT
Found at i:22202286 original size:154 final size:155
Alignment explanation
Indices: 22201799--22202286 Score: 518
Period size: 158 Copynumber: 3.1 Consensus size: 155
22201789 GCTTAGACAT
** **
22201799 GGAATGAACTCCGTATGCCTAAGCCAACATACGAAACGAGCGTGCGGGTGCTCAG-CCGGCCAGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCCGG--AG-
* * * * * * * *
22201863 AAGGCAGAATGCGCAAGCCGGAGATTGGCCTGGTCCCCTTTATGTGCTGTCGATCCTGCTACTGC
63 -AGGCAGAATGAGCAAGCCGGGGATTGGCCCGGTCCCCTCTACGTGCTGCCGATCCTGCTGCCGC
* *
22201928 AA-CCTCCGGTCTGGTCCGATCTTAGATTG
127 AACCCT-CGGTCCGGTCTGATCTTAGATTG
* * * * * *
22201957 GGAATGAACTTCGTATGCTTAAGTCAACCCACGAAACGAGCGTGTGGGCACTGAGCCGGTCGAGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCCG--GAGA
* * * * * * *
22202022 GGCATAATGTGCAAGCCGAGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGGTCCCGCTGCCACA
64 GGCAGAATGAGCAAGCCGGGGATTGGCCCGGT-CCCCTCTACGTGCTGCCGATCCTGCTGCCGCA
* * ** *
22202087 ACCCTCGATCCAG-CTAGGGCTTAGACAT-
128 ACCCTCGGTCCGGTCT-GATCTTAGA-TTG
* *
22202115 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCCCGGAGAGG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCCGGAGAGG
* * *
22202180 CAGAATGAGCAAGCCGGGGATTGGCCCGGTCCCC-CTGCGTGCTGCCGATCCTGTTGCCGTAACC
66 CAGAATGAGCAAGCCGGGGATTGGCCCGGTCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACC
22202244 CTCGGTCCGGTCTGATCTTAGATTG
131 CTCGGTCCGGTCTGATCTTAGATTG
22202269 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
22202287 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 55, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
153 1 0.00
154 56 0.21
155 6 0.02
156 32 0.12
157 28 0.11
158 134 0.50
159 8 0.03
161 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (155 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCCGGAGAGG
CAGAATGAGCAAGCCGGGGATTGGCCCGGTCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACC
CTCGGTCCGGTCTGATCTTAGATTG
Found at i:22202289 original size:26 final size:26
Alignment explanation
Indices: 22202260--22202312 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22202250 CCGGTCTGAT
* *
22202260 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22202286 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
22202312 C
1 C
22202313 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22209300 original size:156 final size:156
Alignment explanation
Indices: 22209034--22209368 Score: 331
Period size: 156 Copynumber: 2.1 Consensus size: 156
22209024 TACGTGCTGT
* * * * * *
22209034 CGATCCTGCTGTCACAA-CCTCGGTCCGATCT-GATCTTAGACTGGGAATGAACTCCGTATGCAT
1 CGATCCTGCTGCCACAACCCTCAGTCTG-GCTAGAGCTTAGACTGGGAATGAACTCCCTATG-A-
** * * * * *
22209097 AAGTGAACCAACGAATTGAGCGTGCGGGTGTTGAGCCGACCAAAGAGGTATAACGCGCAAGCCGG
63 AAGTGAACCAACGAAAAGAGCGTGCGGGTGCTCAGCCGACCAAAGAGGCAGAACGCACAAGCCGG
*
22209162 AGATCGACCT-GG-TCCCCTTCTGCGTGCTAC
128 AGATCGA-CTAGGTTCCCC--CTGCATGCTAC
* *
22209192 CGGTTCTGCTGCCACAACCCTCAGTCTGGCTAGAGCTTAGACAT-GGAATGAACTCCCTATG-AA
1 CGATCCTGCTGCCACAACCCTCAGTCTGGCTAGAGCTTAGAC-TGGGAATGAACTCCCTATGAAA
* * * * ** * *
22209255 GTGAACCCACGAAAAGGGCGTGCGGGTGCTCAGTCGGCCGGAGAGGCAGAATGCACAAGCCGGGG
65 GTGAACCAACGAAAAGAGCGTGCGGGTGCTCAGCCGACCAAAGAGGCAGAACGCACAAGCCGGAG
* *
22209320 ATCTACTAGGTTCCCCCTGCATGCTAT
130 ATCGACTAGGTTCCCCCTGCATGCTAC
22209347 CGATCCTGCTGCCACAACCCTC
1 CGATCCTGCTGCCACAACCCTC
22209369 GATCCATTTC
Statistics
Matches: 144, Mismatches: 28, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
155 31 0.22
156 58 0.40
157 5 0.03
158 16 0.11
159 33 0.23
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
CGATCCTGCTGCCACAACCCTCAGTCTGGCTAGAGCTTAGACTGGGAATGAACTCCCTATGAAAG
TGAACCAACGAAAAGAGCGTGCGGGTGCTCAGCCGACCAAAGAGGCAGAACGCACAAGCCGGAGA
TCGACTAGGTTCCCCCTGCATGCTAC
Found at i:22209413 original size:26 final size:26
Alignment explanation
Indices: 22209382--22209434 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22209372 CCATTTCGAT
22209382 CTTAGACTGGGAATGAAATCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
* * *
22209408 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
22209434 C
1 C
22209435 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:22209790 original size:26 final size:26
Alignment explanation
Indices: 22209761--22209813 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22209751 CCGGTCTGAT
22209761 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
22209787 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
22209813 C
1 C
22209814 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22210164 original size:159 final size:156
Alignment explanation
Indices: 22209786--22210283 Score: 347
Period size: 159 Copynumber: 3.1 Consensus size: 156
22209776 AACTCCGTAT
*
22209786 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTG-TGCGAGCGCTCA
1 GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAAC-AG-GCTGCGAGTGCTCA
* **
22209850 GTCGACCGGAGAGACAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATC
63 GTAGACCGGAGAGACAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTACCGATC
****
22209915 CTACTATTGTAACCCTCAGTCTGGTCCGA
128 CTACTACCACAACCCTCAGTCTGGTCCGA
* ** ** * * * *
22209944 TCTTAGAC-TGGGAATGAACTTTGTATGCCTAAGTTAACCCATGAAACAAGCGTG-TAGGTGCTG
1 GCTTAGACAT-GGAATGAAC-TCCTATGCCTAAGCCAACCCACGAAACAGGC-TGCGA-GTGCTC
* * ** * * ** * *
22210007 AGTAGACCGGAGAGGCATAATGCGTAAGCTGAGGATCGGCCCGGTCCCCTTTTGCGTGCTACCGG
62 AGTAGACCGGAGAGACAGAATGCACAAGCCGAGGATCGGCCCGATCCCC-CCTACGTGCTACCGA
** * * ** *
22210072 TCCTGTTGCCACAACCCTTAGTCTGGTTGGG
126 TCCTACTACCACAACCCTCAGTCTGGTCCGA
*
22210103 GCTTACACATGGAATGAACTACCTATGCCTAAGCCAACCCACGAAACAGGCATGCGAGTGCTCAG
1 GCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCACGAAACAGGC-TGCGAGTGCTCAG
** *** * * * * * * * *
22210168 CCGGTAGGAGAGGCAGAATGCGCAAGCTGGGGGATCGACCCGATCCACCATGCGTGCTACCGATC
64 TAGACCGGAGAGACAGAATGCACAAGC-CGAGGATCGGCCCGATCCCCCCTACGTGCTACCGATC
** * ** * * *
22210233 CTGTTTCTGCAACCCTCGGTCCGGTCTGA
128 CTACTACCACAACCCTCAGTCTGGTCCGA
*
22210262 TCTTAGAC-TGGGAATGAACTCC
1 GCTTAGACAT-GGAATGAACTCC
22210284 ATATACTTAG
Statistics
Matches: 258, Mismatches: 71, Indels: 22
0.74 0.20 0.06
Matches are distributed among these distances:
156 1 0.00
157 3 0.01
158 89 0.34
159 148 0.57
160 17 0.07
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACAGGCTGCGAGTGCTCAGTA
GACCGGAGAGACAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTACCGATCCTA
CTACCACAACCCTCAGTCTGGTCCGA
Found at i:22211335 original size:26 final size:26
Alignment explanation
Indices: 22211299--22211351 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22211289 CCAATCTGAT
*
22211299 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22211325 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22211351 C
1 C
22211352 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22211524 original size:26 final size:25
Alignment explanation
Indices: 22211495--22211545 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
22211485 CAGTCCGATA
22211495 TTAGAC-TAGGAATGAACTCCGTATGC
1 TTAGACAT-GGAATG-ACTCCGTATGC
22211521 TTAGACATGGAATGACTCCGTATGC
1 TTAGACATGGAATGACTCCGTATGC
22211546 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 11 0.46
26 12 0.50
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (25 bp):
TTAGACATGGAATGACTCCGTATGC
Found at i:22211544 original size:25 final size:26
Alignment explanation
Indices: 22211495--22211545 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
22211485 CAGTCCGATA
22211495 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
22211521 TTAGAC-ATGGAATG-ACTCCGTATGC
1 TTAGACTA-GGAATGAACTCCGTATGC
22211546 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:22212020 original size:158 final size:159
Alignment explanation
Indices: 22211656--22212020 Score: 423
Period size: 159 Copynumber: 2.3 Consensus size: 159
22211646 CTTGCTACAG
* * * * **
22211656 CAACCCTCAGTCTGTTCCGATCTTAGACTGGGAGTGAACTCCATATGCCTAAGTCAACCCACGAA
1 CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAACCCAACCCACGAA
* * * * * * * * *
22211721 ATGAGCGTTCGGGCGCTGAGTCGACCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCC
66 ACGAGCATGCGAGCGCTCAGTAGACCGGAGAGGCAGAATGCACAAGACGAGGATCGACCCGGTCC
*
22211786 CCCTCTGTGTGCTGCCGATCCCGCTGCCA
131 CCCTCTGCGTGCTGCCGATCCCGCTGCCA
* ** *
22211815 CAACCCTCAATCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAACCCAACCCACG
1 CAACCCTCAGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCATATGCCTAACCCAACCCACG
* * * * *
22211878 AAACGGGCATGCGAGCTCTCAGCTAG-CCGGAGAGGCAGAATGCATAAGACGGGGATCGACCTGG
64 AAACGAGCATGCGAGCGCTCAG-TAGACCGGAGAGGCAGAATGCACAAGACGAGGATCGACCCGG
* *
22211942 TTCCCC-CTGCGTGCTGCCGATCCTGCTGCCA
128 TCCCCCTCTGCGTGCTGCCGATCCCGCTGCCA
*
22211973 CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGC
22212021 TTAGACTGGG
Statistics
Matches: 170, Mismatches: 31, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
157 1 0.01
158 63 0.37
159 103 0.61
160 3 0.02
ACGTcount: A:0.22, C:0.32, G:0.26, T:0.19
Consensus pattern (159 bp):
CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAACCCAACCCACGAA
ACGAGCATGCGAGCGCTCAGTAGACCGGAGAGGCAGAATGCACAAGACGAGGATCGACCCGGTCC
CCCTCTGCGTGCTGCCGATCCCGCTGCCA
Found at i:22212023 original size:26 final size:26
Alignment explanation
Indices: 22211994--22212046 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22211984 CCGGTCTGAT
22211994 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
22212020 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22212046 C
1 C
22212047 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22212535 original size:684 final size:684
Alignment explanation
Indices: 22211519--22212781 Score: 1640
Period size: 684 Copynumber: 1.8 Consensus size: 684
22211509 AACTCCGTAT
* * * * *
22211519 GCTTAGACATGGAATGACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTTCGACCGCTCAGC
1 GCTTAGACATGGAATGACTCCGTATGCCTAAACCAACCCACAAAATGAGAGTTCGACCACTCAGC
* * * * * * *
22211584 CGGTCGGAGAGGTAGAATGCGCAAGCCGGGGACTGGCTCGATCCTCCTTGCATGCTCTCGATCTT
66 CAGTCGGAGAGGTAGAATACGCAAGCCGAGGACTGGCTCCATCCCCCGTGCATGCTATCGATCTT
* * * *
22211649 GCTACAGCAACCCTCAGTCTGTTCCGATCTTAGACTGGGAGTGAACTCCATATGCCTAAGTCAAC
131 GCTACAGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAAC
* * * * * *
22211714 CCACGAAATGAGCGTTCGGGCGCTGAGTCGACCGGAGAGGCATAATGCGCAAGCCGAGGATCGAC
196 CCACGAAACGAGCGTACGGGCACTGAGTCGACCGAAGAGGCATAATGCGCAAGCAGAGGATCCAC
** ** * * *
22211779 CCGGTCCCCCTCTGTGTGCTGCCGATCCCGCTGCCACAACCCTCAATCCGGCTGGGGCTTAGACA
261 CCGGTCCCCCTCTACGCACTGCCGATCCCACTGCCACAACCCTCAATCCGACTAGGGCTTAGACA
* *
22211844 TGGAATGAACTCCCTATGCCTAACCCAACCCAC-GAAACGGGCATGCGAGCTCTCAGCTAGCCGG
326 TGGAATGAACTCCCTATGCCTAACCCAACCCACAG-AACGGGCATACGAGCGCTCAGCTAGCCGG
* * *
22211908 AGAGGCAGAATGCATAAGACGGGGATCGACCTGGTTCCCCCTGCGTGCTGCCGATCCTGCTGCCA
390 AGAGGCAGAATGCACAAGACGGGGATCGACCTGATTCCCCCTGCGTGCTGCCGATCCTGCTACCA
* *
22211973 CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
455 CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAAC
* * * *
22212038 TCTGTATGCCTAAGTCAACCAACAAAACGAGTGTGTGGGCGCTCAGCCGACCGTAGAGGCCTGTC
520 TCTGTATGCCTAAGCCAACCAACAAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCCTGTC
22212103 AGAGAGGCATAATGCGCAAGCTTGGGATTAGCCCGGTCCCCCTATGCATGCTGTCGATCTCACTG
585 AGAGAGGCATAATGCGCAAGCTTGGGATTAGCCCGGTCCCCCTATGCATGCTGTCGATCTCACTG
22212168 TCGGTCCTGCTACCACAACCCTCGGTCTGACTGGG
650 TCGGTCCTGCTACCACAACCCTCGGTCTGACTGGG
**
22212203 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAATGAGAGTGT-GGGCACTCA
1 GCTTAGACATGGAATG-ACTCCGTATGCCTAAACCAACCCACAAAATGAGAGT-TCGACCACTCA
* *
22212267 GCCAGTCGGAGAGGTAGAATACGCAAGTCGAGGA-TCGGC-CCATCCCCCGTGCGTGCTATCGAT
64 GCCAGTCGGAGAGGTAGAATACGCAAGCCGAGGACT-GGCTCCATCCCCCGTGCATGCTATCGAT
* * * * *
22212330 CTTGCTACCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCATATGCATAAGTC
128 CTTGCTACAGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTC
** ** *
22212395 AACCCATTAAACGAGCGTACGGGCACTGAGTCTG-TTGAAGAGGTATAATGC-CTAAGCTAG-GG
193 AACCCACGAAACGAGCGTACGGGCACTGAGTC-GACCGAAGAGGCATAATGCGC-AAGC-AGAGG
* * * * ** ** *
22212457 ATCCACCTGGTCCCCCTCTACGCACTGTCGGTTCCACTGCCACAATGCTCGGTCTGACTAGGGCT
255 ATCCACCCGGTCCCCCTCTACGCACTGCCGATCCCACTGCCACAACCCTCAATCCGACTAGGGCT
* ** * * *
22212522 TAGACATGGAATGAACTCTCTATGCCTATGCCAACCCACAGAACGGGCGTACGGGCGCTCAGCTG
320 TAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACAGAACGGGCATACGAGCGCTCAGCTA
* ** ** * *
22212587 GTCGGAGAGGCAGAATGTGCAATCCGGGGATCGGCCTGATTCCCCCTGCGTGCTGCTGATCCTGC
385 GCCGGAGAGGCAGAATGCACAAGACGGGGATCGACCTGATTCCCCCTGCGTGCTGCCGATCCTGC
* * * * *
22212652 TACCGCAACCTTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTAAGCTTAGACTGGGAA
450 TACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTGGGAA
* ** * *
22212717 TGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGC
515 TGAACTCTGTATGCCTAAGCCAACCAACAAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGC
22212782 AGAATGCGCA
Statistics
Matches: 486, Mismatches: 86, Indels: 14
0.83 0.15 0.02
Matches are distributed among these distances:
683 1 0.00
684 410 0.84
685 74 0.15
686 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (684 bp):
GCTTAGACATGGAATGACTCCGTATGCCTAAACCAACCCACAAAATGAGAGTTCGACCACTCAGC
CAGTCGGAGAGGTAGAATACGCAAGCCGAGGACTGGCTCCATCCCCCGTGCATGCTATCGATCTT
GCTACAGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAAC
CCACGAAACGAGCGTACGGGCACTGAGTCGACCGAAGAGGCATAATGCGCAAGCAGAGGATCCAC
CCGGTCCCCCTCTACGCACTGCCGATCCCACTGCCACAACCCTCAATCCGACTAGGGCTTAGACA
TGGAATGAACTCCCTATGCCTAACCCAACCCACAGAACGGGCATACGAGCGCTCAGCTAGCCGGA
GAGGCAGAATGCACAAGACGGGGATCGACCTGATTCCCCCTGCGTGCTGCCGATCCTGCTACCAC
AACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAACT
CTGTATGCCTAAGCCAACCAACAAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCCTGTCA
GAGAGGCATAATGCGCAAGCTTGGGATTAGCCCGGTCCCCCTATGCATGCTGTCGATCTCACTGT
CGGTCCTGCTACCACAACCCTCGGTCTGACTGGG
Found at i:22212835 original size:184 final size:184
Alignment explanation
Indices: 22212519--22212885 Score: 440
Period size: 184 Copynumber: 2.0 Consensus size: 184
22212509 TCTGACTAGG
* *
22212519 GCTTAGACATGGAATGAACTCTCTATGCCTATGCCAACCCACAGAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACAGAACGAGCGTACGGGCGCTCAG
* * * * * * * * *
22212584 CTGGTCGGAGAGGCAGAATGTGCAATCCGGGGATCGGCCTGATTCCCCCTGCGTGCTGCTGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAATCCGGGGACCGACCCGATTCACCCTACGTGCTGCTAATCC
* * * *
22212649 TGCTACCGCAACCTTCGGTCTGGTCTGATCTTAGA-TTGGGAATGAACTCCGTAA
131 TGCTACCGCAACCCTCAGTCTGATCCGATCTTAGACTT-GGAATGAACTCCGTAA
* * * *
22212703 GCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCA-TGAAACGAGCGTGCGGGTGCTC
1 GCTTAGACAT-GGAATGAACTCTCTATGCCTAAGCCAACCCACAG-AACGAGCGTACGGGCGCTC
* *
22212766 AGCCGGCCGGAGAGGCAGAATGCGCAAGT-CGGGGACCGACCCGA-TCGACCCTATGTGTTG-TC
64 AGCCGGCCGGAGAGGCAGAATGCGCAA-TCCGGGGACCGACCCGATTC-ACCCTACGTGCTGCT-
*
22212828 AATCCTGCTATCGCAACCCTCAGTCTGATCCGATCTTAGACTTGGAATGAACTCCGTA
126 AATCCTGCTACCGCAACCCTCAGTCTGATCCGATCTTAGACTTGGAATGAACTCCGTA
22212886 TGCCTAAGTC
Statistics
Matches: 155, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
183 5 0.03
184 147 0.95
185 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACAGAACGAGCGTACGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAATCCGGGGACCGACCCGATTCACCCTACGTGCTGCTAATCC
TGCTACCGCAACCCTCAGTCTGATCCGATCTTAGACTTGGAATGAACTCCGTAA
Found at i:22213040 original size:501 final size:500
Alignment explanation
Indices: 22212203--22213254 Score: 1209
Period size: 501 Copynumber: 2.1 Consensus size: 500
22212193 TCTGACTGGG
* * * * *
22212203 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAACCAACCCACAAAATGAGAGTGTGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * * * *
22212267 GCCAGTCGGAGAGGTAGAATACGCAAGTCGAGGATCGGCCCATCCCCCGTGCGTGCTATCGATCT
65 GCCAGCCGGAGAGGCAGAATACGCAAGTCGAGGACCGACCCATCACCCGTACGTGCTATCAATCC
* * * *
22212332 TGCTACCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCATATGCATAAGTCAA
130 TGCTACCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAA
* * * * **
22212397 CCCATTAAACGAGCGTACGGGCACTGAGTCTGTTGAAGAGGTATAATGCCTAAGCTAGGGATCCA
195 CCCATGAAACGAGCATACGGGCACTGAGCCGGCCGAAGAGGTATAATGCCTAAGCTAGGGATCCA
* * * ** * *
22212462 CCTGGTCCCCCTCTACGCACTGTCGGTTCCACTGCCACAATGCTCGGTCTGACTAGGGCTTAGAC
260 CCCGATCCCCCTCTACGCACTGCCGGTTCCACTGCCACAACCCTCGATCCGACTAGGGCTTAGAC
* * * *
22212527 ATGGAATGAACTCTCTATGCCTATGCCAACCCACAG-AACGGGCGTACGGGCGCTCAGCTGG-TC
325 ATGGAATGAACTCCCTATGCCTAAGCCAACCCA-AGAAAAGGGCGTACGGGCGCTCAGCCGGCT-
* * * * *
22212590 GGAGAGGCAGAATGTGCAATCCGGGGATCGG-CCTGATTCCCCCTGCGTGCTG-CTGATCCTGCT
388 GGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAG-TCCCCCCTGCGTGCTGTC-GATCCTGCT
* ** **
22212653 ACCGCAACCTTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTAA
451 ACCGCAACCCTCGGTCCAGTCCAATCTTAGATTGGGAATGAACTCCGTAA
* * **
22212703 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * *
22212768 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGACCGACCCGATCGACCC-TATGTGTTGTCAATC
66 CCAGCCGGAGAGGCAGAATACGCAAGTCGAGGACCGACCC-ATC-ACCCGTACGTGCTATCAATC
* * * * *
22212832 CTGCTATCGCAACCCTCAGTCTGATCCGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCA
129 CTGCTACCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCA
* ** ** ** * *
22212897 ACCCATGAAACGAGCATGCGGGCGTTGAGCCGGCCGGGGAGGTATAATGTGTAAGCTGGGGATCG
194 ACCCATGAAACGAGCATACGGGCACTGAGCCGGCCGAAGAGGTATAATGCCTAAGCTAGGGATCC
* * *** * * *
22212962 ACCCGATCCCTCTCTGCGTGTTGCCGG-TCCTGCTGCCACAACCCTCGATCCGACTGGGGTTTAG
259 ACCCGATCCCCCTCTACGCACTGCCGGTTCC-ACTGCCACAACCCTCGATCCGACTAGGGCTTAG
* *
22213026 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGGCGTGCGGGCGCTCAGCCGGCT
323 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAAAGGGCGTACGGGCGCTCAGCCGGCT
* * *
22213091 GGAGAGGCAGAATGCGTAAGCCGAGGATTGGCCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGC
388 GGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTAC
* **
22213156 CGCAACCCTCGGTCCAGTCCAATCTTAGATTGGGAATGAACTTCGTTT
453 CGCAACCCTCGGTCCAGTCCAATCTTAGATTGGGAATGAACTCCGTAA
* *
22213204 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC
22213255 ATCCGAACGC
Statistics
Matches: 456, Mismatches: 88, Indels: 15
0.82 0.16 0.03
Matches are distributed among these distances:
499 1 0.00
500 91 0.20
501 356 0.78
502 8 0.02
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (500 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCAGCCGGAGAGGCAGAATACGCAAGTCGAGGACCGACCCATCACCCGTACGTGCTATCAATCCT
GCTACCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAAC
CCATGAAACGAGCATACGGGCACTGAGCCGGCCGAAGAGGTATAATGCCTAAGCTAGGGATCCAC
CCGATCCCCCTCTACGCACTGCCGGTTCCACTGCCACAACCCTCGATCCGACTAGGGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAAAGGGCGTACGGGCGCTCAGCCGGCTGGA
GAGGCAGAATGCGCAAGCCGAGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGC
AACCCTCGGTCCAGTCCAATCTTAGATTGGGAATGAACTCCGTAA
Found at i:22213051 original size:159 final size:158
Alignment explanation
Indices: 22212705--22213166 Score: 430
Period size: 158 Copynumber: 2.9 Consensus size: 158
22212695 CTCCGTAAGC
** * * *
22212705 TTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGAGCATGCGGGCGCTCAGC
* * * * ** ** * * *
22212769 CGGCCGGAGAGGCAGAATGCGCAAGTCGGGGACCGACCC-GATCGACCCTATGTGTTGTCAATCC
65 CGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCAG-TCCCCCCTGCGTGCTGCCGATCC
** * * ** *
22212833 TGCTATCGCAACCCTC-AGTCTGA-TCCGAT
129 TGCTGCCACAACCCTCGA-TCCGACTGGGGT
* * * * * *
22212862 CTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGTTGAGC
1 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGAGCATGCGGGCGCTCAGC
* * * * * * * * *
22212927 CGGCCGGGGAGGTATAATGTGTAAGCTGGGGATCGACCC-GATCCCTCTCTGCGTGTTGCCGGTC
65 CGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCAG-TCCC-CCCTGCGTGCTGCCGATC
22212991 CTGCTGCCACAACCCTCGATCCGACTGGGGT
128 CTGCTGCCACAACCCTCGATCCGACTGGGGT
* *
22213022 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGGCGTGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGAGCATGCGGGCGCTCAGCC
* * * *
22213087 GGCTGGAGAGGCAGAATGCGTAAGCCGAGGATTGGCCCAGTCCCCCCTGCGTGCTGTCGATCCTG
66 GGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCAGTCCCCCCTGCGTGCTGCCGATCCTG
*
22213152 CTGCCGCAACCCTCG
131 CTGCCACAACCCTCG
22213167 GTCCAGTCCA
Statistics
Matches: 248, Mismatches: 51, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
158 122 0.49
159 121 0.49
160 5 0.02
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGAGCATGCGGGCGCTCAGCC
GGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCAGTCCCCCCTGCGTGCTGCCGATCCTG
CTGCCACAACCCTCGATCCGACTGGGGT
Found at i:22213953 original size:26 final size:26
Alignment explanation
Indices: 22213902--22213954 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
22213892 GGATCAAACT
* * *
22213902 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
22213928 CTTAGACAT-GGAATGAAATCCATATG
1 CTTAGAC-TGGGAATGAAATCCATATG
22213954 C
1 C
22213955 CTAAGCTAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:22214286 original size:26 final size:26
Alignment explanation
Indices: 22214245--22214297 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22214235 CCGGTTCGAT
22214245 CTTAGATAGGGAATGAACGCCGTATG
1 CTTAGATAGGGAATGAACGCCGTATG
*
22214271 CTTAGATCAGGG-ATGAACTCCGTATG
1 CTTAGAT-AGGGAATGAACGCCGTATG
22214297 C
1 C
22214298 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACGCCGTATG
Found at i:22214676 original size:26 final size:26
Alignment explanation
Indices: 22214625--22214677 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22214615 CCGGTCCGAT
* *
22214625 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
22214651 CTTAGAC-GTGGAATGAACTCCATATG
1 CTTAGACTG-GGAATGAACTCCATATG
22214677 C
1 C
22214678 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22214838 original size:26 final size:26
Alignment explanation
Indices: 22214809--22214861 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22214799 CCGGTCCGAT
22214809 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22214835 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22214861 C
1 C
22214862 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22215850 original size:26 final size:26
Alignment explanation
Indices: 22215812--22215864 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22215802 CCTGTCTGAT
**
22215812 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
22215838 CTTAGACACGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
22215864 C
1 C
22215865 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATG
Found at i:22216045 original size:26 final size:26
Alignment explanation
Indices: 22216007--22216059 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22215997 CTAATCTGAT
22216007 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
22216033 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
22216059 C
1 C
22216060 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22216172 original size:26 final size:26
Alignment explanation
Indices: 22216136--22216188 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22216126 TCCGGTCTGT
22216136 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTAT-GTATG
*
22216162 CTTAGACTGGGGATGAACTATGTATG
1 CTTAGACTGGGAATGAACTATGTATG
22216188 C
1 C
22216189 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTATGTATG
Found at i:22216700 original size:134 final size:134
Alignment explanation
Indices: 22216453--22216700 Score: 320
Period size: 134 Copynumber: 1.9 Consensus size: 134
22216443 CAGCCCGATC
* * * *
22216453 CCCCTCTGCGTGCTACCGATCCTGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATAGAAT
1 CCCCTCTGCGTGCTACCGATCCTGCTACCACAACCCTCGGTCCGACCGAGGCTTAGACATAGAAT
*
22216518 GAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGCGCTCAACTGACCGAAAAGGCT
66 GAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAACTGACCGAAAAGGCT
22216583 CGGT
131 CGGT
* * * *
22216587 CCCCTCTGCGTGCTACTGATCCTGCTACCGCAACCCTCGGTTCGATCCGATG-TTAGAC-TAGGA
1 CCCCTCTGCGTGCTACCGATCCTGCTACCACAACCCTCGGTCCGA-CCGAGGCTTAGACATA-GA
** * * * * *
22216650 ATGAACTCTGTATGCCTAAGGCAACCCACGAAATGAGCGTGCGGGTGCTCA
64 ATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCA
22216701 GCTGGCTGCA
Statistics
Matches: 96, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
133 2 0.02
134 91 0.95
135 3 0.03
ACGTcount: A:0.23, C:0.33, G:0.24, T:0.20
Consensus pattern (134 bp):
CCCCTCTGCGTGCTACCGATCCTGCTACCACAACCCTCGGTCCGACCGAGGCTTAGACATAGAAT
GAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAACTGACCGAAAAGGCT
CGGT
Found at i:22216895 original size:145 final size:145
Alignment explanation
Indices: 22216609--22216875 Score: 385
Period size: 145 Copynumber: 1.8 Consensus size: 145
22216599 CTACTGATCC
* *
22216609 TGCTACCGCAACCCTCGGTTCGATCCGATGTTAGACTAGGAATGAACTCTGTATGCCTAAGGCAA
1 TGCTACCGCAACCCTCGGTTCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGGCAA
* * *
22216674 CCCACGAAATGAGCGTGCGGGTGCTCAGCTGGCTGCAGAGGCAGAATGCGCAAGCTGAGGACCGA
66 CCCACGAAATGAGCGTGCGGGTGCTAAGCCGGCTGCAGAGGCAGAATGCGCAAGCCGAGGACCGA
22216739 CCCGATCCCCCTACG
131 CCCGATCCCCCTACG
* * * * *
22216754 TGCTGCCGCAACCTTCGG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
1 TGCTACCGCAACCCTCGGTTC-GATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGGCA
* * *
22216818 ACCCACGAAATGAGCGTTCGGGTGCTAAGCCGGAC-GGAGAGGCATAATGCGCAAGCCG
65 ACCCACGAAATGAGCGTGCGGGTGCTAAGCCGG-CTGCAGAGGCAGAATGCGCAAGCCG
22216876 GGGATCGGCC
Statistics
Matches: 107, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
144 2 0.02
145 104 0.97
146 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.19
Consensus pattern (145 bp):
TGCTACCGCAACCCTCGGTTCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGGCAA
CCCACGAAATGAGCGTGCGGGTGCTAAGCCGGCTGCAGAGGCAGAATGCGCAAGCCGAGGACCGA
CCCGATCCCCCTACG
Found at i:22217053 original size:159 final size:157
Alignment explanation
Indices: 22216783--22217085 Score: 360
Period size: 159 Copynumber: 1.9 Consensus size: 157
22216773 CTGGTCCGAT
* * * * * * *
22216783 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGTGCTAAGC
1 CTTAGACTGGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAAAGAGCATGCAGGTGCTAAGC
* * * * *
22216848 CGGACGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTTTACGTGTTGTCGATCC
66 CAGACGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGGTCCCCC--TACATGCTGTCGATCC
22216913 CGATGCCACAACCCTCAATTCGGCTGGGG
129 CGATGCCACAACCCTCAATTCGGCTGGGG
* *
22216942 CTTAGACAT-GGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACAG-GCATGCAGGTGCTCA
1 CTTAGAC-TGGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAA-AGAGCATGCAGGTGCTAA
* * *
22217005 GCCAGTC-GAGAGGCAGAATGCACAAGCCGTGGATCGGCTTGGTCCCCCCTACATGCTGTCGATC
64 GCCAGACGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGGT-CCCCCTACATGCTGTCGATC
* * *
22217069 CTGCTGCCGCAACCCTC
128 CCGATGCCACAACCCTC
22217086 GGTCCGGTCT
Statistics
Matches: 121, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
157 27 0.22
158 32 0.26
159 60 0.50
160 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAAAGAGCATGCAGGTGCTAAGC
CAGACGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGGTCCCCCTACATGCTGTCGATCCCG
ATGCCACAACCCTCAATTCGGCTGGGG
Found at i:22217128 original size:26 final size:26
Alignment explanation
Indices: 22217099--22217151 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22217089 CCGGTCTGAT
*
22217099 CTTAGACTG-GGAATGATCTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
22217125 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
22217151 C
1 C
22217152 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Done.