Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 216 of 402
Found at i:22218718 original size:26 final size:26
Alignment explanation
Indices: 22218681--22218732 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22218671 GCTCAAACTT
22218681 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
22218707 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
22218733 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:22219749 original size:26 final size:26
Alignment explanation
Indices: 22219720--22219772 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22219710 CCGATCTGAT
22219720 CTTAGACTAAGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
** * *
22219746 CTTAGACTTGGGATGAACTTCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
22219772 C
1 C
22219773 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:22220224 original size:368 final size:357
Alignment explanation
Indices: 22219534--22220211 Score: 774
Period size: 368 Copynumber: 1.8 Consensus size: 357
22219524 TGTCGATCCC
*
22219534 GCTGCCACAACCCTCGGTCCGACCGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAAC
1 GCTGCCACAACCCTCGATCCGACCGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAAC
* ** * *
22219599 CCATGAAACTGGGTGCGGGCGCTCAGCCAGCCTAGAGAGGCAGAATGTGCAAGTCGGGGATCGAC
66 ACACAAAACTGGGTGCGGGCGCTCAACCAGCCTAGAGAGGCAGAATGTGCAAGCCGGGGATCGAC
* *
22219664 CTAGTCCCCCATACGTGCTACCGATCCTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTA
131 CCAGTCCCCCATACGCGCTACCGATCCTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTA
* * * *
22219729 AGAATGAACTCCGTATGCTTAGACTTGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGA
196 AGAATGAACTACGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
* * * *
22219794 ACGTGTGGGTGCTCAGCTGGACGGAGAGGTCAGTCGGAGAGGCATAATGCACGAGCCGGGGATCA
261 ACATGCGGGTGCTCA----GAC------G-CAGTCGGAGAGGCAGAATGCACAAGCCGGGGATCA
22219859 ACCCGATCGCCCTCTGCATGCTACCGATTTCACTACCGGTCCT
315 ACCCGATCGCCCTCTGCATGCTACCGATTTCACTACCGGTCCT
* * ** *
22219902 GCTGCCATAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGATCCGACCGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAAC
* * *
22219967 ACACAAAAC-GAGCGTGCGGGTGCTCAACC-G-ATCGGAGAGGCAGAATGTGCAAGCCGGGGATC
66 ACACAAAACTG-G-GTGCGGGCGCTCAACCAGCCT-AGAGAGGCAGAATGTGCAAGCCGGGGATC
* *
22220029 GACCCGGTCCCTCCCTACGCGCTACCGATCCTGCTGCTGGTCCTGCTATCGCAACCCTCGATCCG
128 GACCCAGTCCC-CCATACGCGCTACCGA---T-C--CT-G--CTG---TCGCAACCCTCGATCCG
**
22220094 ATCTGATCTTAGACTGGGAATGAACTACGTATGCTTAGA-TATGGAATGAACTCCGTATGCCTAA
180 ATCTGATCTTAGACTAAGAATGAACTACGTATGCTTAGACT-TGGAATGAACTCCGTATGCCTAA
* * * *
22220158 GCCAACCCATGAAATGAGCATGCGGGTGCTCA-AC-CAGTCGGATAGGCAGAATGC
244 GCCAACCCACGAAACGAACATGCGGGTGCTCAGACGCAGTCGGAGAGGCAGAATGC
22220212 GTAAGTCGGG
Statistics
Matches: 262, Mismatches: 31, Indels: 34
0.80 0.09 0.10
Matches are distributed among these distances:
367 2 0.01
368 121 0.46
369 28 0.11
372 1 0.00
373 1 0.00
375 2 0.01
376 3 0.01
378 3 0.01
380 1 0.00
381 100 0.38
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (357 bp):
GCTGCCACAACCCTCGATCCGACCGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAAC
ACACAAAACTGGGTGCGGGCGCTCAACCAGCCTAGAGAGGCAGAATGTGCAAGCCGGGGATCGAC
CCAGTCCCCCATACGCGCTACCGATCCTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTA
AGAATGAACTACGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
ACATGCGGGTGCTCAGACGCAGTCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGATCGCC
CTCTGCATGCTACCGATTTCACTACCGGTCCT
Found at i:22220617 original size:881 final size:882
Alignment explanation
Indices: 22219047--22220666 Score: 2123
Period size: 881 Copynumber: 1.8 Consensus size: 882
22219037 AACTTCATAT
* * ** * *
22219047 GCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTAAGCCTAAGCCAACACACAAAACGAGCGTGCGGGCGCTCAA
* * * * * * * *
22219112 CCGGCCAGAGAGGTAGAATGTATAAGCTGAGGATTGACCCGATCCCTCTTACATGCTATCGATCC
66 CCGACCAGAGAGGCAGAATGTACAAGCCGAGGATCGACCCGATCCCTCCTACACGCTACCGATCC
* *
22219177 TGCTGCTGGTCCTGCTACTGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATA
131 TGCTGCTGGTCCTGCTACTGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTACATA
* * *
22219242 TGCTTATACATGGAATGAACTCTGCATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
196 TGCTTAGACATGGAATGAACTCCGCATGCCCAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * * * * * *
22219307 ATCGGTCGGAGACGTAGAATATGAAAGCCGGGGACCGGCCCGACCCCTCCCTGTGTGCTGTCGAT
261 ACCAGTCGGAGACGCAGAATACGAAAGCCGGGGACAGGCCCGACCCCTCCCTGCGTGCTGTCAAT
* * * * * *
22219372 CCTGCTACCATAACCTTCGATCTGGTCTGATCTTAGACTGGGAATGAACTACGTATGCCTAAATC
326 CCTACTACCACAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTACGTACGCCTAAATC
* * * * * *
22219437 AACCCATGAAATGAGTGTTCGGGTGCTGAGTCAATCGAAGAGGCATAATACGCAAGTCAGGGATC
391 AACCCACGAAACGAGTGTTCGGGCGCTGAGCCAACCGAAGAGGCATAATACGCAAGCCAGGGATC
* ** *
22219502 GACCCGATCCCCCTCTGCATGCTGTCGATCCCGCTGCCACAACCCTCGGTCCGACCGGGGCTTAG
456 GACCCGATCCCCCTCTACATGCTACCGATCCCGCTGCCACAACCCTCAGTCCGACCGGGGCTTAG
*
22219567 ACATGGAATGAACTCCCTATGCCTAAGCAAACCCATGAAACTGGGTGCGGGCGCTCAGCCAGCCT
521 ACATGGAATGAACTCCCTATGCCTAAGCAAACCCATGAAACTGGGTGCGGGCACTCAGCCAGCCT
* * * * *
22219632 AGAGAGGCAGAATGTGCAAGTCGGGGATCGACCTAGTCCCCCATACGTGCTACCGATCCTGCTGT
586 AAAGAGGCAGAATGCGCAAGCCGGGGATCAACCTAGTCCCCCATACGTGCTACCGATCCTGCTGC
*
22219697 CGCAACCCTCGATCCGATCTGATCTTAGACTAAGAATGAACTCCGTATGCTTAGACTTGGGATGA
651 CGCAACCCTCGATCCGATCTGATCTTAGACTAAGAATGAACTCCGTATGCTTAGACTAGGGATGA
22219762 ACTTCGTATGCCTAAGTCAACCCACGAAACGAACGTGTGGGTGCTCAGCTGGACGGAGAGGTCAG
716 ACTTCGTATGCCTAAGTCAACCCACGAAACGAACGTGTGGGTGCTCAGCTGGACGGAGAGGTCAG
22219827 TCGGAGAGGCATAATGCACGAGCCGGGGATCAACCCGATCGCCCTCTGCATGCTACCGATTTCAC
781 TCGGAGAGGCATAATGCACGAGCCGGGGATCAACCCGATCGCCCTCTGCATGCTACCGATTTCAC
22219892 TACCGGTCCTGCTGCCATAACCCTCGATCCGACTGGG
846 TACCGGTCCTGCTGCCATAACCCTCGATCCGACTGGG
* * *
22219929 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACACACAAAACGAGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTAAGCCTAAGCCAACACACAAAACGAGCGTGCGGGCGCTCA
* * * * * *
22219993 ACCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCTCCCTACGCGCTACCGAT
65 ACCGACCAGAGAGGCAGAATGTACAAGCCGAGGATCGACCCGATCCCT-CCTACACGCTACCGAT
22220058 CCTGCTGCTGGTCCTGCTA-TCGCAACCCTCGATCC-GATCTGATCTTAGACTGGGAATGAACTA
129 CCTGCTGCTGGTCCTGCTACT-GCAACCCTCGATCCAG-TCTGATCTTAGACTGGGAATGAACTA
* * * * * * *
22220121 CGTATGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGTG
192 CATATGCTTAGACATGGAATGAACTCCGCATGCCCAAGCCAACCCACGAAACGAGCATGCGGGCG
* * * * * * * **
22220186 CTCAACCAGTCGGATAGGCAGAATGCGTAAGTCGGGGATAGGCCTGGTCCC-CCCTGCGTGCTGT
257 CTCAACCAGTCGGAGACGCAGAATACGAAAGCCGGGGACAGGCCCGACCCCTCCCTGCGTGCTGT
* ** * *
22220250 CAATCCTACTGCTGCAACCCTCGATCTGATCCGATCTTAGATTGGGAATGAACTCCGCT-CGCCT
322 CAATCCTACTACCACAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTACG-TACGCCT
* * * * **
22220314 AAGTCAAGCCACGAAACGAACGTG-T-GGGCGCTGAGCCAGCC-AGAGTGGCATAATGTGCAA-C
386 AAATCAACCCACGAAACG-A-GTGTTCGGGCGCTGAGCCAACCGA-AGAGGCATAATACGCAAGC
* ** * * *
22220375 CGGGGATCGACCCGATCCCCCTCTATGTGCTACCGATCCCGCTGTCACAACCCTCAGTCTGACTG
448 CAGGGATCGACCCGATCCCCCTCTACATGCTACCGATCCCGCTGCCACAACCCTCAGTCCGACCG
*
22220440 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-GGACGTGCGGGCACT
513 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACCCATGAAACTGG--GTGCGGGCACT
* * * * *
22220504 CAGCCGGCC-AAAGAGGTAGAATGCGTAAGCCGGGGATCAA-CTCGGTCCCTCC-TACGTGCTAT
576 CAGCCAGCCTAAAGAGGCAGAATGCGCAAGCCGGGGATCAACCT-AGTCCC-CCATACGTGCTAC
* * ** *
22220566 CGATCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTA
639 CGATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTAAGAATGAACTCCGTATGCTTA
22220631 GACTAGGGATGAACTTCGTATGCCTAAGTCAACCCA
704 GACTAGGGATGAACTTCGTATGCCTAAGTCAACCCA
22220667 TAAAACGAGC
Statistics
Matches: 624, Mismatches: 102, Indels: 25
0.83 0.14 0.03
Matches are distributed among these distances:
880 4 0.01
881 237 0.38
882 215 0.34
883 165 0.26
884 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (882 bp):
GCTTAGACTGGGAATGAACTCCGTAAGCCTAAGCCAACACACAAAACGAGCGTGCGGGCGCTCAA
CCGACCAGAGAGGCAGAATGTACAAGCCGAGGATCGACCCGATCCCTCCTACACGCTACCGATCC
TGCTGCTGGTCCTGCTACTGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTACATA
TGCTTAGACATGGAATGAACTCCGCATGCCCAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
ACCAGTCGGAGACGCAGAATACGAAAGCCGGGGACAGGCCCGACCCCTCCCTGCGTGCTGTCAAT
CCTACTACCACAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTACGTACGCCTAAATC
AACCCACGAAACGAGTGTTCGGGCGCTGAGCCAACCGAAGAGGCATAATACGCAAGCCAGGGATC
GACCCGATCCCCCTCTACATGCTACCGATCCCGCTGCCACAACCCTCAGTCCGACCGGGGCTTAG
ACATGGAATGAACTCCCTATGCCTAAGCAAACCCATGAAACTGGGTGCGGGCACTCAGCCAGCCT
AAAGAGGCAGAATGCGCAAGCCGGGGATCAACCTAGTCCCCCATACGTGCTACCGATCCTGCTGC
CGCAACCCTCGATCCGATCTGATCTTAGACTAAGAATGAACTCCGTATGCTTAGACTAGGGATGA
ACTTCGTATGCCTAAGTCAACCCACGAAACGAACGTGTGGGTGCTCAGCTGGACGGAGAGGTCAG
TCGGAGAGGCATAATGCACGAGCCGGGGATCAACCCGATCGCCCTCTGCATGCTACCGATTTCAC
TACCGGTCCTGCTGCCATAACCCTCGATCCGACTGGG
Found at i:22220627 original size:158 final size:157
Alignment explanation
Indices: 22220136--22220627 Score: 440
Period size: 158 Copynumber: 3.1 Consensus size: 157
22220126 GCTTAGATAT
* * * * * *
22220136 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-TGAGCATGCGGGTGCTCAACCAGTCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGA-CGTGCGGGCGCTCAGCCAGCCAGA
* * * * * * * *
22220200 TAGGCAGAATGCGTAAGTCGGGGAT-AGGCCTGGTCCCCCCTGCGTGCTGTCAATCCTACTGCTG
65 GAGGCAGAATGCGTAAGCCGGGGATCA-ACC-GGTCCCCCCTACGTGCTATCGATCCTGCTGCCG
* * *
22220264 CAACCCTCGATCTGATCCGATCTTAGATTG
128 CAACCCTCGATCTGGTCTGATCTTAGACTG
* * * * * * *
22220294 GGAATGAACTCCGCT-CGCCTAAGTCAAGCCACGAAACGAACGTGTGGGCGCTGAGCCAGCCAGA
1 GGAATGAACTCCG-TATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCGCTCAGCCAGCCAGA
* * * * * * * * * * *
22220358 GTGGCATAATGTGCAA-CCGGGGATCGACCCGATCCCCCTCTATGTGCTACCGATCCCGCTGTCA
65 GAGGCAGAATGCGTAAGCCGGGGATC-AACCGGTCCCCC-CTACGTGCTATCGATCCTGCTGCCG
* **
22220422 CAACCCTC-AGTCT-GACTGGGGCTTAGACAT-
128 CAACCCTCGA-TCTGGTCT-GATCTTAGAC-TG
* * * *
22220452 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCACTCAGCCGGCCAAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCGCTCAGCCAGCCAGAG
* *
22220517 AGGTAGAATGCGTAAGCCGGGGATCAACTCGGTCCCTCCTACGTGCTATCGATCCTGCTGCCGCA
66 AGGCAGAATGCGTAAGCCGGGGATCAAC-CGGTCCCCCCTACGTGCTATCGATCCTGCTGCCGCA
22220582 ACCCTCGATCTGGTCTGATCTTAGACTG
130 ACCCTCGATCTGGTCTGATCTTAGACTG
*
22220610 GGAATGAACTCTGTATGC
1 GGAATGAACTCCGTATGC
22220628 TTAGACTAGG
Statistics
Matches: 254, Mismatches: 66, Indels: 28
0.73 0.19 0.08
Matches are distributed among these distances:
157 18 0.07
158 212 0.83
159 24 0.09
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCGCTCAGCCAGCCAGAG
AGGCAGAATGCGTAAGCCGGGGATCAACCGGTCCCCCCTACGTGCTATCGATCCTGCTGCCGCAA
CCCTCGATCTGGTCTGATCTTAGACTG
Found at i:22220630 original size:26 final size:26
Alignment explanation
Indices: 22220601--22220653 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
22220591 CTGGTCTGAT
22220601 CTTAGACT-GGGAATGAAC-TCTGTATG
1 CTTAGACTAGGG-ATGAACTTC-GTATG
22220627 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGGATGAACTTCGTATG
22220653 C
1 C
22220654 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTTCGTATG
Found at i:22222781 original size:159 final size:159
Alignment explanation
Indices: 22222504--22222800 Score: 441
Period size: 159 Copynumber: 1.9 Consensus size: 159
22222494 GCTGGTCCTA
* * *
22222504 CTACCATAACCCTCGGTCTGGCTGGGGCATAGACATGAAATGAACTCCGTATGCCTAAGCCAACC
1 CTACCACAACCCTCAGTCTGGCTGGGGCATAGACATGAAATGAACTCCCTATGCCTAAGCCAACC
* * * *
22222569 CATAAAACGAGCGTGCGGGTGCTCAGTCGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCT
66 CATAAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCAGCT
*
22222634 CGGTCCCCCTATGCATGCTGCCGGTCCCG
131 CGATCCCCCTATGCATGCTGCCGGTCCCG
* * *
22222663 CTACCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACC
1 CTACCACAACCCTCAGTCTGGCTGGGGCATAGACATGAAATGAACTCCCTATGCCTAAGCCAACC
* * * * * *
22222728 CATGAAATGCGCGTGCGGGCGCTCAGCCGATCGGAGAGGTAGAATGCGCAAGCCAAGGATCGGCT
66 CATAAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCAGCT
22222793 CGATCCCC
131 CGATCCCC
22222801 TTTGTGTGCT
Statistics
Matches: 121, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
159 121 1.00
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (159 bp):
CTACCACAACCCTCAGTCTGGCTGGGGCATAGACATGAAATGAACTCCCTATGCCTAAGCCAACC
CATAAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCAGCT
CGATCCCCCTATGCATGCTGCCGGTCCCG
Found at i:22222884 original size:26 final size:26
Alignment explanation
Indices: 22222848--22222900 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22222838 CTGGTTCGAT
22222848 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
22222874 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22222900 C
1 C
22222901 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22223979 original size:26 final size:26
Alignment explanation
Indices: 22223941--22223993 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22223931 CCGATCTGAT
22223941 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22223967 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
22223993 C
1 C
22223994 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22225532 original size:156 final size:159
Alignment explanation
Indices: 22225190--22225532 Score: 372
Period size: 156 Copynumber: 2.2 Consensus size: 159
22225180 AAATTTGTAT
* *
22225190 GCTTTGACATGGAATGAACTCCACATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *** *
22225255 CCGACCGAAGAAGTAGAATGCGCAAGCTGAGGATCGACTTGGTCCCCCTCTGCATGCTGCCGGTC
66 CCGACCGAAGAAGCAGAATGCGCAAGCCGAGGATCAACCCAGTCCCCCTCTGCATGCTGCCGATC
* ***
22225320 CCGTTGCCACAACCCTCGATCCAGCTGGG
131 CCGCTGCCACAACCCTCGATCCAGCTCAA
* * *
22225349 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGC-GGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
22225413 CTGGCCGGAGAGGCAG-ATGCGCAAGCCGGGGATCAACCCAGTCCCCC-CTGCGTGCTGTCGATC
66 CCGACCGAAGAAGCAGAATGCGCAAGCCGAGGATCAACCCAGTCCCCCTCTGCATGCTGCCGATC
* * * *
22225476 CTGCTGCCCCAACCCTC-AGTCTAGTTCAA
131 CCGCTGCCACAACCCTCGA-TCCAGCTCAA
* *
22225505 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
22225533 TTAGACTGGG
Statistics
Matches: 152, Mismatches: 30, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
155 2 0.01
156 55 0.36
157 25 0.16
158 20 0.13
159 50 0.33
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGACCGAAGAAGCAGAATGCGCAAGCCGAGGATCAACCCAGTCCCCCTCTGCATGCTGCCGATC
CCGCTGCCACAACCCTCGATCCAGCTCAA
Found at i:22225675 original size:184 final size:182
Alignment explanation
Indices: 22225372--22225712 Score: 445
Period size: 184 Copynumber: 1.9 Consensus size: 182
22225362 ATGAACTCCC
* * * * * *
22225372 TATGCCTAAGCCAACCCATGAAACGGGCGTGCGGCGCTCAGCTGGCCGGAGAGGCAGATGCGCAA
1 TATGCCTAAGCCAACCCACGAAACGAGCGTACGGCGCTCAACCGGCCGGAGAGGCAGATGCACAA
* *
22225437 GCCGGGGATCAACCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCCCAACCCTC-AGTCT-AG
66 GCCGGGGATCAACCCAGTCCCCCCTGCGTGCTATCGATCCTACTGCCCCAACCCTCGA-TCTGA-
*
22225500 TTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTTG
129 TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTTG
* * *
22225554 TATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGTCGGAGAGGCAGAATGCAT
1 TATGCCTAAGCCAACCCACGAAACGAGCGTAC-GGCGCTCAACCGGCCGGAGAGGCAG-ATGCAC
* *** * * *
22225619 AGGCCGGGGATC-GGTCTGATCCCCCCTGTGTGCTATCGATCCTACTGCCGCAACCCTCGATCTG
64 AAGCCGGGGATCAACCCAG-TCCCCCCTGCGTGCTATCGATCCTACTGCCCCAACCCTCGATCTG
22225683 ATCCAATCTTAGACTGGGAATGAACTCCGT
128 ATCCAATCTTAGACTGGGAATGAACTCCGT
22225713 TTGCCTAAGT
Statistics
Matches: 135, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
182 28 0.21
183 24 0.18
184 81 0.60
185 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (182 bp):
TATGCCTAAGCCAACCCACGAAACGAGCGTACGGCGCTCAACCGGCCGGAGAGGCAGATGCACAA
GCCGGGGATCAACCCAGTCCCCCCTGCGTGCTATCGATCCTACTGCCCCAACCCTCGATCTGATC
CAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTTG
Found at i:22226208 original size:25 final size:26
Alignment explanation
Indices: 22226159--22226208 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
22226149 CCAGTTCGAT
*
22226159 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATAAACTCTGTATG
22226185 CTTAGACTAGG-ATAAACTCTGTAT
1 CTTAGACTAGGAATAAACTCTGTAT
22226209 TCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCTGTATG
Found at i:22227266 original size:159 final size:157
Alignment explanation
Indices: 22226905--22227407 Score: 524
Period size: 158 Copynumber: 3.2 Consensus size: 157
22226895 AACTCCGTAT
* * * *
22226905 GCTTATACGTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGTTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
22226970 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
65 CCGGCCGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
* * *
22227035 TGCTACTGCAACCCTTGGTCCAGTCCAA
130 CGCTACTGCAACCCTCGGTCCACTCCAA
* ** * * *
22227063 TCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTAAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
22227128 CCGGTCGGAGAGGCATAATACGCAAGTCAGGGATCGGCCTGGTCCCCCTCTGCATGCTGTCGGTC
65 CCGGCCGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCTGGTCCCCC-CTGCGTGCTGTCGATC
***
22227193 CCGCTACCT-CAACCCTCGGTCCGACT-GGG
129 CCGCTA-CTGCAACCCTCGGTCC-ACTCCAA
* * * *
22227222 GCTTAGACATGGAATCAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
22227287 CCAGCCGTAGAGGTAGAATATGTAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
65 CCGGCCGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
* ** * * * **
22227352 TGCTGTTGCAACCCTTGGTTCAATCTGA
130 CGCTACTGCAACCCTCGGTCCACTCCAA
* *
22227380 TCTTAGATTGGGAATGAACTCCGTATGC
1 GCTTAGACT-GGAATGAACTCCGTATGC
22227408 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 59, Indels: 16
0.79 0.17 0.05
Matches are distributed among these distances:
157 5 0.02
158 147 0.53
159 121 0.44
160 5 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCC
GCTACTGCAACCCTCGGTCCACTCCAA
Found at i:22227417 original size:26 final size:26
Alignment explanation
Indices: 22227381--22227433 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22227371 TCAATCTGAT
*
22227381 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22227407 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22227433 C
1 C
22227434 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22228139 original size:26 final size:26
Alignment explanation
Indices: 22228101--22228153 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22228091 GGCTCAAAGT
22228101 CTTAGACTGGGAATGAACTCCGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
*
22228127 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGAATG
22228153 C
1 C
22228154 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:22228312 original size:26 final size:26
Alignment explanation
Indices: 22228280--22228340 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
22228270 CTCATTCTGA
*
22228280 TCCGTATGCTTAGACTGGGAACGAAC
1 TCCGTATGCCTAGACTGGGAACGAAC
* *
22228306 TCTGTATGCCTAGACTGGGAATGAAC
1 TCCGTATGCCTAGACTGGGAACGAAC
22228332 TCCGTATGC
1 TCCGTATGC
22228341 ATAAGTCAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
TCCGTATGCCTAGACTGGGAACGAAC
Found at i:22228458 original size:187 final size:187
Alignment explanation
Indices: 22228101--22228459 Score: 427
Period size: 187 Copynumber: 1.9 Consensus size: 187
22228091 GGCTCAAAGT
* * *
22228101 CTTAGACTGGGAATGAACTCCGAATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCC
1 CTTAGACTGGGAACGAACTCCGAATGCCTAGACATGGAATGAACTCCGTATGCATAAGCTAACCC
* * * * * *
22228166 ACGAAATGAGCGTGCGGGGGCTCAGCCAATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTC
66 ACAAAATGAGCATGCGGGCGCTCAGCCAACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCC
* * * * * *
22228231 GATCCCCTCCTACGTGCTATCGATCCTGCTATCGCAACCCTCATTCTGATCCGTATG
131 GACCCCCTCCTACATGCTACCGATCCCGCTACCACAACCCTCATTCTGATCCGTATG
* *
22228288 CTTAGACTGGGAACGAACTCTGTATGCCTAGAC-TGGGAATGAACTCCGTATGCATAAG-TCAAC
1 CTTAGACTGGGAACGAACTCCGAATGCCTAGACAT-GGAATGAACTCCGTATGCATAAGCT-AAC
* * * * * *
22228351 CCACAAAATGAGCATTCGGGCGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGGC
64 CCACAAAATGAGCATGCGGGCGCTCAGCCAACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGAC
* * * *
22228416 CCGGCCCCC-CTCTACATGTTGCCGATCCCGCTGCCACAACCCTC
129 CCGACCCCCTC-CTACATGCTACCGATCCCGCTACCACAACCCTC
22228460 GGTCTGGCTG
Statistics
Matches: 142, Mismatches: 27, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
186 3 0.02
187 139 0.98
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.19
Consensus pattern (187 bp):
CTTAGACTGGGAACGAACTCCGAATGCCTAGACATGGAATGAACTCCGTATGCATAAGCTAACCC
ACAAAATGAGCATGCGGGCGCTCAGCCAACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCC
GACCCCCTCCTACATGCTACCGATCCCGCTACCACAACCCTCATTCTGATCCGTATG
Found at i:22228840 original size:26 final size:26
Alignment explanation
Indices: 22228802--22228854 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22228792 CCGGTCTGAT
*
22228802 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
22228828 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
22228854 C
1 C
22228855 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:22229015 original size:25 final size:26
Alignment explanation
Indices: 22228987--22229038 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22228977 TTGGTTCGAT
* *
22228987 CTTAGCCT-GGGAAGAACTCCTTATG
1 CTTAGACTGGGGAAGAACTCCGTATG
*
22229012 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGAAGAACTCCGTATG
22229038 C
1 C
22229039 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGAAGAACTCCGTATG
Found at i:22229639 original size:11 final size:11
Alignment explanation
Indices: 22229615--22229658 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
22229605 CGGTTAGGCT
* *
22229615 CTCCGGCGATG
1 CTCCGACGAAG
22229626 CTCCGACGAAG
1 CTCCGACGAAG
* *
22229637 CTCCAACGATG
1 CTCCGACGAAG
22229648 CTCCGACGAAG
1 CTCCGACGAAG
22229659 GTGCCCCGGG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.23, C:0.36, G:0.27, T:0.14
Consensus pattern (11 bp):
CTCCGACGAAG
Found at i:22230123 original size:159 final size:157
Alignment explanation
Indices: 22229753--22230255 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 157
22229743 AACTCCACAT
* * *
22229753 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
22229818 TCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTATCGATTC
65 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACATGCTATCGATCC
** *
22229883 TGCTGCTACAACCCTCGGTCCGATCTAA
130 CACTGCCACAACCCTCGGTCCGATCTAA
* * ** *
22229911 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTTAACCCATGAAACGAGCGTGCGGGCGCTGAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* ** * * * * * * * *
22229976 CCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGACTCGGTCCACCTCTGCATGCTGTCGGTC
65 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCC-CCCCTACATGCTATCGATC
* * **
22230041 CCACTGCCATAACCCTCGGTCTGA-CTGGG
129 CCACTGCCACAACCCTCGGTCCGATCT-AA
* * *
22230070 GCTTAGACGTGGAATGAACTCCCTATTCCTAAGCCAACCCATGAAA-TAGGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGCGCTCA
* * * * **
22230134 GTCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCC-AGTCCCCCTTGCGTGCTGCCGAT
64 GTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGA-TCCCCCCTACATGCTATCGAT
* * * * * *
22230198 CCTACTGCCGCAACACTCGATCCGGTCTGA
128 CCCACTGCCACAACCCTCGGTCCGATCTAA
* *
22230228 TCTTAGACTAGGAATGAACTCCATATGC
1 GCTTAGACT-GGAATGAACTCCGTATGC
22230256 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 61, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 150 0.54
159 123 0.45
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACATGCTATCGATCCC
ACTGCCACAACCCTCGGTCCGATCTAA
Found at i:22230270 original size:26 final size:26
Alignment explanation
Indices: 22230229--22230280 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
22230219 CCGGTCTGAT
22230229 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
22230255 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
22230281 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:22230753 original size:184 final size:184
Alignment explanation
Indices: 22230425--22230794 Score: 429
Period size: 184 Copynumber: 2.0 Consensus size: 184
22230415 TCCGGCTGAA
* * * *
22230425 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGAGCGGGCGCTCAG
1 GCTTACACATGGAATGAACTCCATATCCCTAAGCCAACCCACGAAACAAGCGAGCGGGCACTCAA
* * * * * ** * *
22230490 CCGGCCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCCCCTGCATGGAGTCGATCT
66 ACGGCCGGAGAGGCAGAATACACAAGCCGAGGACCAACCCGATCCCCCCTACATGGAGTCGATCC
* * * * *
22230555 TGCTGCCGCAACCCTCGGTTCAATCTAATCTTAGACTGGGAATGAACTCCGTAT
131 TACTGCCACAACCCTCGGTCCAATCCAATCTTAGACTGGGAATGAACTCCATAT
* * * *
22230609 GCTTAGACATGGAGTGAACTCCATATCCCTAAGCCAACCCATGAAACGAGC-ATGCGGGCACTCA
1 GCTTACACATGGAATGAACTCCATATCCCTAAGCCAACCCACGAAACAAGCGA-GCGGGCACTCA
* * * * * *
22230673 AATGGTCGGAGAGGTAGAATACGCAAGCCGAGGACCAACCCGATCCCCCCTACGTGCTA-TCGAT
65 AACGGCCGGAGAGGCAGAATACACAAGCCGAGGACCAACCCGATCCCCCCTACATG-GAGTCGAT
* * *
22230737 CCTACTGCCACAACCCTCTGTCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
129 CCTACTGCCACAACCCTCGGTCCAATCCAATCTTAGACTGGGAATGAACTCCATAT
22230793 GC
1 GC
22230795 CTAAGTCAAC
Statistics
Matches: 153, Mismatches: 31, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
183 1 0.01
184 151 0.99
185 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.24, T:0.18
Consensus pattern (184 bp):
GCTTACACATGGAATGAACTCCATATCCCTAAGCCAACCCACGAAACAAGCGAGCGGGCACTCAA
ACGGCCGGAGAGGCAGAATACACAAGCCGAGGACCAACCCGATCCCCCCTACATGGAGTCGATCC
TACTGCCACAACCCTCGGTCCAATCCAATCTTAGACTGGGAATGAACTCCATAT
Found at i:22231125 original size:26 final size:26
Alignment explanation
Indices: 22231084--22231136 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22231074 CTGGTCCGAT
22231084 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
22231110 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTTCGTATG
22231136 C
1 C
22231137 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:22232076 original size:26 final size:26
Alignment explanation
Indices: 22232047--22232099 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22232037 CCAGTCCGAT
*
22232047 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22232073 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22232099 C
1 C
22232100 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22232438 original size:170 final size:170
Alignment explanation
Indices: 22232072--22232440 Score: 390
Period size: 170 Copynumber: 2.2 Consensus size: 170
22232062 AACTCCGTAT
* *
22232072 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAG
* * * * * * *
22232137 CCGGCTGGAGAGGCATAATGCGCAAGCTGAGGATCAGCCCGATCCCCCTCTACGTGTTACCGATC
65 CCAGCCGGAAAGGCAAAATGAGCAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGGTACCGATC
** * *
22232202 CTGCTGTTGATCCTGCTGCCACAACCCTCGGTCCGACTGGG
130 CTGCTACTGATCCTGCTACCACAACCCTCGGTCCGACTGGA
* * * *
22232243 GCTTAGACATGGTATGAATTCCGTATGCCTAAG-CTAACCCACAAAACGAGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTC-AACCCACAAAACGAGCATGCGGGCGCTCA
* * * * * *
22232307 GCTAGCCGGAAAGGCAAAATGAGTAA-CCGGGGATC-GACCCGGTCCCCC-CTTGCGTGGTACTG
64 GCCAGCCGGAAAGGCAAAATGAGCAAGCCGAGGATCAG-CCCGATCCCCCTC-TACGTGGTACCG
* *
22232369 ATCCTGCTACTGGTCC-GACTACCACAACCCTCGGTCTGATCT-GA
127 ATCCTGCTACTGATCCTG-CTACCACAACCCTCGGTCCGA-CTGGA
*
22232413 TCTTAGACTGAGAATGAACTCCGTATGC
1 GCTTAGACTG-GAATGAACTCCGTATGC
22232441 TTAGACATGG
Statistics
Matches: 164, Mismatches: 27, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
169 5 0.03
170 82 0.50
171 76 0.46
172 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (170 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAGC
CAGCCGGAAAGGCAAAATGAGCAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGGTACCGATCC
TGCTACTGATCCTGCTACCACAACCCTCGGTCCGACTGGA
Found at i:22232453 original size:26 final size:26
Alignment explanation
Indices: 22232414--22232466 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22232404 CTGATCTGAT
22232414 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
22232440 CTTAGACATG-GAATTAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
22232466 C
1 C
22232467 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:22232844 original size:26 final size:26
Alignment explanation
Indices: 22232803--22232855 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22232793 CTGGTCTGAT
*
22232803 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
22232829 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22232855 C
1 C
22232856 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22233556 original size:26 final size:26
Alignment explanation
Indices: 22233518--22233570 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22233508 GGCTCAAAAT
22233518 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22233544 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22233570 C
1 C
22233571 ATAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22233844 original size:26 final size:26
Alignment explanation
Indices: 22233806--22233858 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22233796 CTGGTCCGAT
*
22233806 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22233832 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22233858 C
1 C
22233859 CCAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22234341 original size:26 final size:26
Alignment explanation
Indices: 22234305--22234356 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
22234295 TCCGGTCCGA
22234305 TCTTAGACTGGGAATGAACTTCGTAT
1 TCTTAGACTGGGAATGAACTTCGTAT
* *
22234331 TCTTAGACTGGGGATGAACTTTGTAT
1 TCTTAGACTGGGAATGAACTTCGTAT
22234357 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.37
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTTCGTAT
Found at i:22234764 original size:159 final size:159
Alignment explanation
Indices: 22234475--22234773 Score: 440
Period size: 159 Copynumber: 1.9 Consensus size: 159
22234465 TGCCGGTCCT
* ** *
22234475 GCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAAC
* * *
22234540 CCACGAAACTAGCGTGCGGGCGCTCAGCCGACCGAAAAAGTAAAATGAAGAAGCCGGGGATCGGC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAAAAGCAAAATGAAGAACCCGGGGATCGGC
22234605 CCGATCCCCCTCTATGAGCTACCGATCTC
131 CCGATCCCCCTCTATGAGCTACCGATCTC
*
22234634 GCTGCCACAACCCTCAGTCC-GACTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAA
1 GCTGCCACAACCCTCAGTCCAG-CTAGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAA
* * * * * *
22234698 CCCACGAAACGGGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATG-CGCAACCCGGGGATCG
65 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAAAAGCAAAATGAAG-AACCCGGGGATCG
22234762 GCCCGATCCCCC
129 GCCCGATCCCCC
22234774 CTGCGTGTTG
Statistics
Matches: 124, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
158 2 0.02
159 122 0.98
ACGTcount: A:0.25, C:0.33, G:0.27, T:0.14
Consensus pattern (159 bp):
GCTGCCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAAAAGCAAAATGAAGAACCCGGGGATCGGC
CCGATCCCCCTCTATGAGCTACCGATCTC
Found at i:22234870 original size:26 final size:26
Alignment explanation
Indices: 22234820--22234872 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22234810 CTGGTCCGAT
**
22234820 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22234846 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22234872 C
1 C
22234873 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22235934 original size:158 final size:159
Alignment explanation
Indices: 22235571--22235978 Score: 487
Period size: 158 Copynumber: 2.6 Consensus size: 159
22235561 GCTTCAACTA
* * *
22235571 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTGAGCCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCGGAG
* * *
22235636 AGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGGTCCTGCTGCCAC
66 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCAC
** * *
22235701 AACCCTCAGTCTGGCTGGGGCTCAGACAT
131 AACCCTCAGTCCAGCTCGAGCTCAGACAT
* * * * * * *
22235730 GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGCTGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCGGAG
* **
22235795 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCCGT
66 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCAC
** * * *
22235859 AACCCTTGGTCCAGTTCGATCTTAGAC-T
131 AACCCTCAGTCCAGCTCGAGCTCAGACAT
* * ** *
22235887 GGGAATGAACTCCGTATGCGTAAGTCAACCCACGTAACGAGCATGCGGGAACTCAGCCGACCAGA
1 -GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCGGA
* * * *
22235952 GGGGCAGGATGCGCAAACCGGAGATCG
65 GAGGCAGAATGCGCAAGCCGGGGATCG
22235979 AATGGGTGGT
Statistics
Matches: 207, Mismatches: 41, Indels: 3
0.82 0.16 0.01
Matches are distributed among these distances:
157 1 0.00
158 115 0.56
159 91 0.44
ACGTcount: A:0.22, C:0.31, G:0.31, T:0.16
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCGGAG
AGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCAC
AACCCTCAGTCCAGCTCGAGCTCAGACAT
Found at i:22236956 original size:26 final size:26
Alignment explanation
Indices: 22236927--22236979 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22236917 CCGGTCTGAT
22236927 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * * *
22236953 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22236979 C
1 C
22236980 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22237336 original size:26 final size:26
Alignment explanation
Indices: 22237307--22237359 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22237297 CCGGTCTGAT
** *
22237307 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGGATG
22237333 CTTAGACACGGAATGAACTCCGGATG
1 CTTAGACACGGAATGAACTCCGGATG
22237359 C
1 C
22237360 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGGATG
Found at i:22244098 original size:159 final size:158
Alignment explanation
Indices: 22243739--22244221 Score: 571
Period size: 158 Copynumber: 3.1 Consensus size: 158
22243729 GCTAAACTGG
**
22243739 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGG
1 ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGG
* * * * ** *
22243804 CAGGATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTGTGTGCTGTCGATCTTGCTGCCACAACC
66 CAGAATGCGCAAGCAGGGGATCAGCCTGATCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACC
* * * *
22243869 CTTGATCCGGTCTAATCTTAGATTGGGA
131 CTCGATCCAGTCTGATCTTAGACTGGGA
* * *
22243897 ATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCAGCCGGAGAGG
1 ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGG
* * *
22243962 CATAATGCGCAAGTC-GGGGATTAGCCTGATCCCCCTCTACGTGCTGTCGGTCCTGCTGCCACAA
66 CAGAATGCGCAAG-CAGGGGATCAGCCTGATCCCCC-CTACGTGCTGTCGATCCTGCTGCCACAA
**
22244026 CCCTCGATCCAG-CTGGGGCTTAGACAT-GGA
129 CCCTCGATCCAGTCT-GATCTTAGAC-TGGGA
* * * * * * * *
22244056 ATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCACTCTA-TCGGTCGGAGAG
1 ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC-AGCCGGCCGGAGAG
* * * *
22244120 GCAGAATGCGCAAGCCACGGG-TCAGCCTGATCCCCCCTACGTGCTGTCGATCCTACTGTCGCAA
65 GCAGAATGCGCAAG-CAGGGGATCAGCCTGATCCCCCCTACGTGCTGTCGATCCTGCTGCCACAA
*
22244184 CCCTCGGTCCAGTCTGATCTTAGACTGGGA
129 CCCTCGATCCAGTCTGATCTTAGACTGGGA
22244214 ATGAACTC
1 ATGAACTC
22244222 TGTATGCTTA
Statistics
Matches: 275, Mismatches: 42, Indels: 16
0.83 0.13 0.05
Matches are distributed among these distances:
157 1 0.00
158 144 0.52
159 125 0.45
160 5 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGG
CAGAATGCGCAAGCAGGGGATCAGCCTGATCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACC
CTCGATCCAGTCTGATCTTAGACTGGGA
Found at i:22244231 original size:26 final size:26
Alignment explanation
Indices: 22244202--22244254 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22244192 CCAGTCTGAT
*
22244202 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22244228 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22244254 C
1 C
22244255 CTAATTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22245690 original size:343 final size:342
Alignment explanation
Indices: 22245060--22245806 Score: 1059
Period size: 343 Copynumber: 2.2 Consensus size: 342
22245050 CCGGTTCGAT
* * *
22245060 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGACCGTGCGGGCGTTGAGC
1 CTTAGA-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
** * * ** * * *
22245125 GGGCCGGAGAGGCATAATGCTCAAGTCGGGTATCGACCCGGTCGGCCTCTACGTCCTGCCGATCT
65 CAGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCCTACGTCCTACCGATCC
** *
22245190 TGCTGCCACAACCCTCGGTCCGGCTGGTACTTAGACATGGAATAAACTCCCTATGCCTAAGCCAA
130 CCCTGCCACAACCCTCGGTCCGGCTGGTACTTAGACATGCAATAAACTCCCTATGCCTAAGCCAA
* *
22245255 CCCACGAAACGGGCGTGCGGGTGCTCTGTCGGCCGGAGAGGTAGAATGCGCAAGCCAGGGGTCGG
195 CCCACGAAACGGGCGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGCAAGCCAGGGGTCGG
* * * *
22245320 CCTGATCCCCCCTGTGTGCTATCGATCCTACTGTCGCAACCTTCGGTCCAGTCCGATCTTAGACT
260 CCTGATCCCCCCCGCGTGCTATCGATCCTACTGTCGCAACCCTCGATCCAGTCCGATCTTAGACT
**
22245385 GGGAATGAACTTTGTATG
325 GGGAATGAACTCCGTATG
*
22245403 CTTAGATAGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
1 CTTAGAT-GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
* * * * *
22245468 CAGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCTGGTCCCCCCCTGCTTGCTACCGATCC
65 CAGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCCTACGTCCTACCGATCC
* *
22245533 CCCTGCCACAACCCTCGGTCCGGCTAGG-GCTTAGACATGCAATGAACTCCCTATGCCTAAGCCA
130 CCCTGCCACAACCCTCGGTCCGGCT-GGTACTTAGACATGCAATAAACTCCCTATGCCTAAGCCA
22245597 ACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGCAAGCC-GGGGATC
194 ACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGCAAGCCAGGGG-TC
* * * * *
22245661 GGGCC-GGTCCCCCCCGCGTGCTGTCGATCCTACTGTCGCAACCCTCTATCCGGTCTGATCTTAG
258 -GGCCTGATCCCCCCCGCGTGCTATCGATCCTACTGTCGCAACCCTCGATCCAGTCCGATCTTAG
22245725 ACTGGGAATGAACTCCGTATG
322 ACTGGGAATGAACTCCGTATG
* * * *
22245746 CTTAGACTGGGGATGAACTCCCTATGCCTAAGTTAACCCACAAAATGAGCGTGCGGACGCT
1 CTTAGA-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCT
22245807 CAGTCGACCA
Statistics
Matches: 358, Mismatches: 41, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
342 5 0.01
343 346 0.97
344 7 0.02
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (342 bp):
CTTAGATGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCC
AGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCCTACGTCCTACCGATCCC
CCTGCCACAACCCTCGGTCCGGCTGGTACTTAGACATGCAATAAACTCCCTATGCCTAAGCCAAC
CCACGAAACGGGCGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGCAAGCCAGGGGTCGGC
CTGATCCCCCCCGCGTGCTATCGATCCTACTGTCGCAACCCTCGATCCAGTCCGATCTTAGACTG
GGAATGAACTCCGTATG
Found at i:22245749 original size:26 final size:26
Alignment explanation
Indices: 22245720--22245772 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22245710 CCGGTCTGAT
*
22245720 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
22245746 CTTAGACTGGGGATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
22245772 C
1 C
22245773 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:22246471 original size:26 final size:26
Alignment explanation
Indices: 22246433--22246511 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
22246423 GGCTCAGAAT
*
22246433 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
22246459 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCGTATG
22246485 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
22246511 C
1 C
22246512 CTAAACCAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 48 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22247877 original size:26 final size:26
Alignment explanation
Indices: 22247839--22247894 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
22247829 GGCTCAAAAT
22247839 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22247865 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22247891 CTTA
1 CTTA
22247895 AGCCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22248060 original size:26 final size:26
Alignment explanation
Indices: 22248022--22248074 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22248012 TCGGTCTGAT
*
22248022 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
22248048 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
22248074 C
1 C
22248075 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22248159 original size:183 final size:184
Alignment explanation
Indices: 22247836--22248233 Score: 532
Period size: 183 Copynumber: 2.2 Consensus size: 184
22247826 CGTGGCTCAA
* * * *
22247836 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCTTAAGCCAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAACCAA
* * * * * *
22247901 CCCACGAAATGAGTGTACGGGCGCTCAGTCGGCCGAAGAGGTAGAATGCGCAAGCCGGGGATTAG
66 CCCACGAAACGAGCGTACGGGCGCTCAGTCGGCAGAAGAGGCAGAATGCGCAAGCCGAGGATGAG
* * * * *
22247966 CCCGGT-CCCCCTGTGTGCTACCGATCCTACTACCGTAACCCTCGGTTCGGTCT
131 CCCAGTCCCCCCTGTGTGCTACCGATCCTACTACCGCAACCCTCGATCCGATCT
*
22248019 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAACCAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAACCAA
*
22248084 CCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCAG-AGAGGCAGAATGCGCAAGCCGAGGATCG
66 CCCACGAAACGAGCGTACGGGCGCTCAGTCGG-CAGAAGAGGCAGAATGCGCAAGCCGAGGAT-G
* * * * *
22248148 A-CCCAGTCCCCCCCTGTGTGCTATCGATCCTGCTGCCGCAATCCTTGATCCGATCT
129 AGCCCAGT-CCCCCCTGTGTGCTACCGATCCTACTACCGCAACCCTCGATCCGATCT
* *
22248204 AATATTAGATTGGGAATGAACTCCGTATGC
1 AATCTTAGACTGGGAATGAACTCCGTATGC
22248234 CTAAGTCAAC
Statistics
Matches: 186, Mismatches: 25, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
183 118 0.63
184 3 0.02
185 65 0.35
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (184 bp):
AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAACCAA
CCCACGAAACGAGCGTACGGGCGCTCAGTCGGCAGAAGAGGCAGAATGCGCAAGCCGAGGATGAG
CCCAGTCCCCCCTGTGTGCTACCGATCCTACTACCGCAACCCTCGATCCGATCT
Found at i:22248480 original size:159 final size:158
Alignment explanation
Indices: 22248047--22248516 Score: 444
Period size: 160 Copynumber: 3.0 Consensus size: 158
22248037 AACTCCGTAT
*
22248047 GCTTAGACATGGAATGAACTCCATATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
22248112 -TCGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCCTGTGTGCTATCGAT
66 CT-GGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCAGT-CCCCCTTGTGTGCTATCGAT
* * * *
22248176 CCTGCTGCCGCAATCCTTGATCCGATCTAA
129 CCCGCTGCCACAACCCTCGATCCGATCTAA
** * * * * *
22248206 TATTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACACCACGAAACGAGCGTACGGGCGCTA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAAC-CCACGAAACGAGCGTGCGGGCGCTC
* * * * * * *
22248270 AGCCGGTCGAAGAGGCATAATGCGTAAGCCGGGGA-CCAGCCCGGTCCCCCTTAGTGTGCTGTCG
64 AGCTGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGA-CCCAGTCCCCCTT-GTGTGCTATCG
* * * **
22248334 GTCCCGTTGCCACAACCCTCGATCCGGT-TGGG
127 ATCCCGCTGCCACAACCCTCGATCCGATCT-AA
* * * * *
22248366 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCTACCCACGAAACGGGCATGCGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *** * **
22248431 CTGGGCGGAGAAGCAAAATAAACAAGCCGGGGATCGACCTAGTCCCCCTTGCATGCTATCGATCC
66 CTGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTTGTGTGCTATCGATCC
** **
22248496 TACTGCCGTAACCCTCGATCC
131 CGCTGCCACAACCCTCGATCC
22248517 AGTTTGATCT
Statistics
Matches: 244, Mismatches: 59, Indels: 17
0.76 0.18 0.05
Matches are distributed among these distances:
158 28 0.11
159 96 0.39
160 119 0.49
161 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CTGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTTGTGTGCTATCGATCC
CGCTGCCACAACCCTCGATCCGATCTAA
Found at i:22249483 original size:26 final size:26
Alignment explanation
Indices: 22249432--22249484 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22249422 CTGGTCCGAT
*
22249432 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22249458 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
22249484 C
1 C
22249485 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22250190 original size:26 final size:26
Alignment explanation
Indices: 22250152--22250204 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22250142 GGCTCAAACT
22250152 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22250178 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
22250204 C
1 C
22250205 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22250678 original size:158 final size:156
Alignment explanation
Indices: 22250178--22250681 Score: 458
Period size: 158 Copynumber: 3.2 Consensus size: 156
22250168 ACTCCGTATG
* *
22250178 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * * *
22250243 CTGTCGGAGAGGCAGAATGTGCAAGCTGGGGATC-GACCCGATCCCCCCTACATGGTATCGATCT
66 C-GTCGGAGAGGCAAAATGTGCAAGCCGGGGATCAG-CCAG-TCCCCCTTACATGCTACCGATCC
* *
22250307 TGCTGCCGTAACCCTCGGTCCGGTCTGAT
128 TGCTGCCGCAACCCTCGATCCGGTCTGAT
* * ** * * * * *
22250336 CTTAGAC-TAGGAATGAACTTCGTACGCAAAAGTCAACCCACGAAACGAGCGTACAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCTTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * ** * * * * ** *
22250400 CCGCCCGAAGAGGCGTAATGTGCAAGTCGAGGATCGGCCCGGACCCCTCTACATGCTGCCGATCC
65 CCG-TCGGAGAGGCAAAATGTGCAAGCCGGGGATCAGCCAGTCCCCCT-TACATGCTACCGATCC
* * * **
22250465 CGCTGCCACAACCCTCGATCTGG-CTGGGG
128 TGCTGCCGCAACCCTCGATCCGGTCT-GAT
* * * *
22250494 CTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * *
22250559 CGATTGGAGAGGCAAAATGCGCAAGCCGGGGTTCAGCCTAGTCCCCCTTGCGTGCTACCGATCCT
66 CG-TCGGAGAGGCAAAATGTGCAAGCCGGGGATCAGCC-AGTCCCCCTTACATGCTACCGATCCT
* *
22250624 GCTACCGCAACCCTTGATCCGGTCTGAT
129 GCTGCCGCAACCCTCGATCCGGTCTGAT
*
22250652 CTTAGAC-TGGGAATGAACTCCATATGCTTA
1 CTTAGACAT-GGAATGAACTCCGTATGCTTA
22250682 GACTGGGATG
Statistics
Matches: 269, Mismatches: 68, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 9 0.03
158 250 0.93
159 10 0.04
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGTCGGAGAGGCAAAATGTGCAAGCCGGGGATCAGCCAGTCCCCCTTACATGCTACCGATCCTGC
TGCCGCAACCCTCGATCCGGTCTGAT
Found at i:22251342 original size:26 final size:26
Alignment explanation
Indices: 22251304--22251356 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22251294 GGCTCAAAAT
*
22251304 CTTAGACTAGGAATCAACTCTGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
*
22251330 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATCAACTCCGTATG
22251356 C
1 C
22251357 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCGTATG
Found at i:22251805 original size:26 final size:26
Alignment explanation
Indices: 22251754--22251806 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22251744 CTGGTTCGAT
*
22251754 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
22251780 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
22251806 C
1 C
22251807 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:22252664 original size:26 final size:26
Alignment explanation
Indices: 22252635--22252687 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22252625 CCAGTTCGAT
22252635 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* * *
22252661 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
22252687 C
1 C
22252688 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:22252859 original size:26 final size:26
Alignment explanation
Indices: 22252830--22252882 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22252820 CTGATCCGAT
*
22252830 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
22252856 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
22252882 C
1 C
22252883 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:22254216 original size:26 final size:26
Alignment explanation
Indices: 22254187--22254238 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
22254177 CGATTAGATG
22254187 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* *
22254213 TTAGACTGGGGATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
22254239 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:22254421 original size:26 final size:26
Alignment explanation
Indices: 22254383--22254435 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22254373 CCGGTCTGAA
22254383 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
22254409 CTTAGAC-ATGGAATTAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
22254435 C
1 C
22254436 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:22254755 original size:159 final size:158
Alignment explanation
Indices: 22254408--22254770 Score: 399
Period size: 158 Copynumber: 2.3 Consensus size: 158
22254398 AACTCCATAT
* * *
22254408 GCTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTGAG
* * * * *
22254473 CCGGCTGAAGAGGTAGAATGCACAAGTCGGGGACTGACCCGGTCCCCCCTGCGTGCTGTCGATCT
66 CCGGCCGAAGAGGCAGAATGCACAAGCCGGGGACTGACCCGGTCCCCCCTGCATGCTGTCGATCC
* * * **
22254538 TGCTGCCACAACCTTCGGTCTGATCCGA
131 CGCTACCACAACCTTCAGTCCAATCCGA
* ** * *
22254566 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCATTCGGGGGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTGA
** * * ** * *
22254630 GTTGGCCGGAGAGGCATAATGTGCAAGCCGGGGA-TCGACCCGGTCCCCCTTTGCATGCTGTCGG
65 GCCGGCCGAAGAGGCAGAATGCACAAGCCGGGGACT-GACCCGGTCCCCC-CTGCATGCTGTCGA
* *
22254694 TCCCGCTACCACAACCTTCAGTCCAA-CTGGG
128 TCCCGCTACCACAACCTTCAGTCCAATC-CGA
* *
22254725 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
22254771 TTGGTGTACG
Statistics
Matches: 167, Mismatches: 33, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 93 0.56
159 71 0.43
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTGAG
CCGGCCGAAGAGGCAGAATGCACAAGCCGGGGACTGACCCGGTCCCCCCTGCATGCTGTCGATCC
CGCTACCACAACCTTCAGTCCAATCCGA
Found at i:22254822 original size:159 final size:158
Alignment explanation
Indices: 22254408--22254853 Score: 415
Period size: 159 Copynumber: 2.8 Consensus size: 158
22254398 AACTCCATAT
* * *
22254408 GCTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * *
22254473 CCGGCTGAAGAGGTAGAATGCACAA-GTCGGGGA-CTGACCCGGTCCCCC-CTGCGTGCTGTCGA
66 TCGCCTG-AGAGGTAGAATGCACAACCT-GGGGATC-GACCCGGTCCCCCTCTGCATGCTGTCGA
** * * **
22254535 TCTTGCTGCCACAACCTTCGGTCTGATCCGA
128 TCCCGCTACCACAACCTTCAGTCCAATCCGA
* ** * * * *
22254566 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCATTCGGGGGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * ** * *
22254630 GTTGGCCGGAGAGGCATAATGTGCAAGCC-GGGGATCGACCCGGTCCCCCTTTGCATGCTGTCGG
65 G-TCGCCTGAGAGGTAGAATGCACAA-CCTGGGGATCGACCCGGTCCCCCTCTGCATGCTGTCGA
* *
22254694 TCCCGCTACCACAACCTTCAGTCCAA-CTGGG
128 TCCCGCTACCACAACCTTCAGTCCAATC-CGA
* * * *
22254725 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATTG-GTGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-CGAGCGTACGGGCGCTCA
* * *
22254789 GTCGACCTGAGAGGTAGAATGCACAACCTGGGGATCGGCTCGGT-CCCC-CTGCGTGCTGTCGAT
65 GTCG-CCTGAGAGGTAGAATGCACAACCTGGGGATCGACCCGGTCCCCCTCTGCATGCTGTCGAT
22254852 CC
129 CC
22254854 AACTGTCGAA
Statistics
Matches: 227, Mismatches: 50, Indels: 23
0.76 0.17 0.08
Matches are distributed among these distances:
157 15 0.07
158 95 0.42
159 115 0.51
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
TCGCCTGAGAGGTAGAATGCACAACCTGGGGATCGACCCGGTCCCCCTCTGCATGCTGTCGATCC
CGCTACCACAACCTTCAGTCCAATCCGA
Found at i:22254923 original size:26 final size:26
Alignment explanation
Indices: 22254882--22254934 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22254872 TCTGGTTGAT
*
22254882 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22254908 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
22254934 C
1 C
22254935 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22255257 original size:699 final size:695
Alignment explanation
Indices: 22253981--22255611 Score: 2110
Period size: 698 Copynumber: 2.3 Consensus size: 695
22253971 CTGGTCCACT
* * * *
22253981 TCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCAGTTCGACTGGGGCTTAGACATGGAATGAAC
1 TCTACATGCTGTCGGTCCCGCTACCACAACCTTCAGTCCGACTGGGGCTTAGACATGGAATGAAC
* * * * * *
22254046 TCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCCCAATCGGTCGGAGAGGCAGAAT
66 TCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGTC-GACTGAGAGGCAGAAT
* * * * * *
22254111 GCGCAAGCC-GGGGATCAGCGCAGTCCCCCTTGCGTGCTGTAGATCTTGCT-ACCACAACCCTCG
130 GCGCAA-CCTGGGGATCAGCCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTGTCGA-AACCCTCG
* * *
22254174 ATCCGATTAGATGTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGC
193 ATCCGATT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGC
* * * ** *
22254239 CTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCC
257 ATAAGTCAACCCACGAAACGAGCGTACGGGCAATCAGCCGACCAGAGAGGCAGAATGCACAAGCC
* * * * * * *
22254304 GGGGATTGAGCCGGTCCCCCCCTGCGTGCTACCGATCCTGCTATTGGTCCTGCTACCGCAACCCT
322 GGGGATTCAGCCGGTCCCCCCCTACGTGCTACCGATCCTACTACTAGTCCTGCTACCACAACACT
*
22254369 CGGTCCGGTCTGAACTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAATTAACTCCGTAT
387 CGGTCCGGTCTGAACTTAGACTAGGAATGAACTCCAGATGCTTAGACATGGAATTAACTCCGTAT
* * * *
22254434 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCTGAAGAGGTAGAATGCACAAG
452 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGAAGAGGCAGAATGCACAAG
* * * *
22254499 TCGGGGACTGACCCGGTCCCCCCTGCGTGCTGTCGATCTTGCTGCCACAACCTTCGGTCT-GATC
517 CCGGGGACTGACCCGGTCCCCCCTGCGTGCTGTCAATCCTGCTGCCACAACCCTCGGTCTAG-TC
* * *
22254563 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCATTCGGGGGCT
581 CGATCTTAGACTGGGAATGAACTCCATATGCCTAAATCAACCCACGAAACGAGCATACGGGCGCT
** * * *
22254628 GAGTTGGCCGGAGAGGCATAATGTGCAAGCCGGGGATCGACCCGGTCCCCC
646 GAGCCGACCGGAGAGGCATAATGCGCAAGCC-GGGATCGACCCGATCCCCC
* * *
22254679 TTTGCATGCTGTCGGTCCCGCTACCACAACCTTCAGTCCAACTGGGGCTTAGACATGGAATGAAC
1 TCTACATGCTGTCGGTCCCGCTACCACAACCTTCAGTCCGACTGGGGCTTAGACATGGAATGAAC
* ** * *
22254744 TCCCTATGCCTAAGCCAACCCATGAAATTGGTGTACGGGCGCTCAGTCGACCTGAGAGGTAGAAT
66 TCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGTCGA-CTGAGAGGCAGAAT
* * * **
22254809 GCACAACCTGGGGATCGGCTCGGTCCCCC-TGCGTGCTGTCGATCCAACTGTCGAAACCCTCGAT
130 GCGCAACCTGGGGATCAGCCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTGTCGAAACCCTCGAT
* * *
22254873 CTGGTTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGGATGAACTCCGTATGCATA
195 CCGATTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCATA
* * * * * * *
22254938 AGTCAACCCATGAAACGAGCGTACGGGTAATCAGTCGGCCGGAGAGGCATAATGCATAAGCCGGG
260 AGTCAACCCACGAAACGAGCGTACGGGCAATCAGCCGACCAGAGAGGCAGAATGCACAAGCCGGG
* * * ** * * *
22255003 GA-TCAGCTTGGTCCCCCTCTACGTGTTGTCGATCCTACTGCTAGTCCTGCTGCCACAACATTCG
325 GATTCAGC-CGGTCCCCCCCTACGTGCTACCGATCCTACTACTAGTCCTGCTACCACAACACTCG
** *
22255067 GTCCGG-CTGGGGCTCCGTATG-CTGGGAATGAACTCCAGATGCTTAGACATGGAATTAACTCCG
389 GTCCGGTCT-GAACT---TA-GACTAGGAATGAACTCCAGATGCTTAGACATGGAATTAACTCCG
*
22255130 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGAAGAGGCAGAATGCGC
449 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGAAGAGGCAGAATGCAC
*
22255195 AAGCCGGGGA-TCGACCCGGTCCCTCCTGCGTGCTGTCAATCCTGCTGCCACAACCCTCGGTCTA
514 AAGCCGGGGACT-GACCCGGTCCCCCCTGCGTGCTGTCAATCCTGCTGCCACAACCCTCGGTCTA
* * * *
22255259 GTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAAGTCAACCCACGAAACGAGCGTACGGGC
578 GTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAATCAACCCACGAAACGAGCATACGGGC
* * * * *
22255324 GTTGAGCCGATCGGAGAGGCATAATGCGTAAGCCGGGATCGGCTCGATCCCCC
643 GCTGAGCCGACCGGAGAGGCATAATGCGCAAGCCGGGATCGACCCGATCCCCC
* * *
22255377 TCTACGTGCTGTCGGTCTCGCTACCACAACCCTTGA-TCCGACTGGGGCTTAGACATGGAATGAA
1 TCTACATGCTGTCGGTCCCGCTACCACAA-CCTTCAGTCCGACTGGGGCTTAGACATGGAATGAA
* *
22255441 CTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGGGCGCTCAGCCGACTGGAGAGGCAGAA
65 CTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGTCGACT-GAGAGGCAGAA
* * * *
22255506 TGCGCAAGCTGGGGATCAGCCCGGTCCCCCTTCCGTGCTGCCGATCCTGCTGTCGCAACCCTCGA
129 TGCGCAACCTGGGGATCAGCCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTGTCGAAACCCTCGA
*
22255571 TCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCTTA
194 TCCGAT-TGATCTTAGACTGGGAATGAACTCCGTATGCTTA
22255612 AGTCAACCCA
Statistics
Matches: 799, Mismatches: 119, Indels: 28
0.84 0.13 0.03
Matches are distributed among these distances:
695 6 0.01
696 160 0.20
697 35 0.04
698 284 0.36
699 280 0.35
700 34 0.04
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (695 bp):
TCTACATGCTGTCGGTCCCGCTACCACAACCTTCAGTCCGACTGGGGCTTAGACATGGAATGAAC
TCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGTCGACTGAGAGGCAGAATG
CGCAACCTGGGGATCAGCCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTGTCGAAACCCTCGATC
CGATTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCATAA
GTCAACCCACGAAACGAGCGTACGGGCAATCAGCCGACCAGAGAGGCAGAATGCACAAGCCGGGG
ATTCAGCCGGTCCCCCCCTACGTGCTACCGATCCTACTACTAGTCCTGCTACCACAACACTCGGT
CCGGTCTGAACTTAGACTAGGAATGAACTCCAGATGCTTAGACATGGAATTAACTCCGTATGCCT
AAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGAAGAGGCAGAATGCACAAGCCGG
GGACTGACCCGGTCCCCCCTGCGTGCTGTCAATCCTGCTGCCACAACCCTCGGTCTAGTCCGATC
TTAGACTGGGAATGAACTCCATATGCCTAAATCAACCCACGAAACGAGCATACGGGCGCTGAGCC
GACCGGAGAGGCATAATGCGCAAGCCGGGATCGACCCGATCCCCC
Found at i:22255404 original size:158 final size:157
Alignment explanation
Indices: 22255108--22255659 Score: 610
Period size: 158 Copynumber: 3.5 Consensus size: 157
22255098 ACTCCAGATG
* * *
22255108 CTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAGC
* * * * * *
22255173 CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCTC-CTGCGTGCTGTCAATCC
66 CGACCGGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGATCC
* *
22255237 TGCTGCCACAACCCTCGGTCTAGTCTGAT
130 TGCTGCCACAACCCTCGATC-CGTCTGAT
* * * * ** *
22255266 CTTAGAC-TGGGAATGAACTCCATATGCTTAAGTCAACCCACGAAACGAGCGTACGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAG
* * * * * *
22255330 CCGATCGGAGAGGCATAATGCGTAAGCCGGGATCGGCTCGATCCCCCTCTACGTGCTGTCGGT-C
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGATCC
* * * **
22255394 TCGCTACCACAACCCTTGATCCGACTGGGG
130 T-GCTGCCACAACCCTCGATCCGTCT-GAT
* * *
22255424 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAGC
* * * * *
22255489 CGACTGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCT-TCCGTGCTGCCGATCC
66 CGACCGGAGAGGCAGAATGCGCAAGC-CGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGATCC
* * *
22255553 TGCTGTCGCAACCCTCGATCCGATCTAAT
130 TGCTGCCACAACCCTCGATCCG-TCTGAT
* * *
22255582 CTTAGAC-TGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAG
22255646 CCGACCGGAGAGGC
65 CCGACCGGAGAGGC
22255660 CGGTCGAAGA
Statistics
Matches: 325, Mismatches: 60, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
157 22 0.07
158 281 0.86
159 22 0.07
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGATCCT
GCTGCCACAACCCTCGATCCGTCTGAT
Found at i:22255974 original size:26 final size:26
Alignment explanation
Indices: 22255936--22255988 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22255926 CCGATCCAAT
22255936 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
22255962 CTTAGAC-ATGGAATGGACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
22255988 C
1 C
22255989 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22256467 original size:26 final size:26
Alignment explanation
Indices: 22256438--22256490 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22256428 CCGATCCGAT
22256438 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
22256464 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
22256490 C
1 C
22256491 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:22257518 original size:26 final size:26
Alignment explanation
Indices: 22257489--22257541 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22257479 CCAGTCCGAT
22257489 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
22257515 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22257541 C
1 C
22257542 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22257740 original size:26 final size:26
Alignment explanation
Indices: 22257698--22257750 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22257688 CTGATCCAAT
*
22257698 CTTAGACTAGGATTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
22257724 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
22257750 C
1 C
22257751 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22258616 original size:158 final size:157
Alignment explanation
Indices: 22258270--22258616 Score: 371
Period size: 159 Copynumber: 2.2 Consensus size: 157
22258260 AGTTCAGTCT
* * * *
22258270 GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACTCATGAAACGAGCGTACGGGTGCTG
1 GATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTC
* * * *
22258335 AGTCGGCCAGAGAGTCATAATGCGCAAGCTGGGGATCGACCCAGTCCCCCTCTGCATGCTGCCGG
65 AGTCGGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGT-CCCCTCTGCATACTGCCGA
*
22258400 TCCCACTACCACAACCCTCGATCCGACTG
129 TCCCACTACCACAACCCTCGATCCGACTA
** * * * * *
22258429 GGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTC
1 GATCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTC
* *
22258494 AGTCGGCC-GAAGAGGCAGAATGCGCAAG-TCGGGGATCGACTC-GAT-CCCTACTGCGTACTGC
65 AGTCGGCCAG-AGAGGCAGAATGCGCAAGCT-GGGGATCGACCCAG-TCCCCT-CTGCATACTGC
*** * *
22258555 CGATCTTGCTACCATAACCCTCGATCC-AGTTA
126 CGATCCCACTACCACAACCCTCGATCCGA-CTA
22258587 GATCTTAGACTGGGAATGAACTCCGTATGC
1 GATCTTAGACT-GGAATGAACTCCGTATGC
22258617 TCAGACTGGG
Statistics
Matches: 154, Mismatches: 27, Indels: 15
0.79 0.14 0.08
Matches are distributed among these distances:
157 6 0.04
158 59 0.38
159 88 0.57
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
GATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
GTCGGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGTCCCCTCTGCATACTGCCGATC
CCACTACCACAACCCTCGATCCGACTA
Found at i:22258816 original size:26 final size:26
Alignment explanation
Indices: 22258787--22258839 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22258777 CCGATCCGAT
22258787 CTTAGAC-TGGGAAAAAACTCCGTATG
1 CTTAGACAT-GGAAAAAACTCCGTATG
**
22258813 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAAAAAACTCCGTATG
22258839 C
1 C
22258840 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAAAAAACTCCGTATG
Found at i:22259300 original size:26 final size:26
Alignment explanation
Indices: 22259271--22259323 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22259261 CCGATCTGAT
22259271 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
22259297 CTTAGATTGGGGATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22259323 C
1 C
22259324 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22259821 original size:159 final size:155
Alignment explanation
Indices: 22259439--22259822 Score: 360
Period size: 157 Copynumber: 2.4 Consensus size: 155
22259429 TACCGATAAT
* * * * *
22259439 GCTACCACGACCCTCGGTACAGCTAGGGCTCAGACTTAGAATGAACTCCGC-ATGCCTAAGCCAA
1 GCTACCACAACCCTCGGTCCAG-TTGGGCTTAGAC-TGGAATGAACTCC-CTATGCCTAAGCCAA
* * * *
22259503 CCCACGAAACGAACGTGCGGGCGTTCAGCCGAACGGAGAGGCAGAATGCACAAGTCGGGGATCGA
63 CCCACAAAACGAACATGCGAGCGCTCAGCCGAACGGAGAGGCAGAATGCACAAGTCGGGGATCGA
* * ** *
22259568 TCGGTCCCCCCTACATGCTGTCGATCCT
128 CCGATCCCCCCTACATGCTACCGATCCC
* * ** ** * * *
22259596 GCTACCACAACCCTTGATCTGGTCTGATCTTGGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
1 GCTACCACAACCCTCGGTCCAGT-TGGGCTTAGACT-GGAATGAACTCCCTATGCCTAAGCCAAC
* * * * *
22259661 CCACAAAAC-AAGCATGCGAGCGCTGAGCCG-GCTGGAGATGCATAATGCGCAAGTCGGGGATCG
64 CCACAAAACGAA-CATGCGAGCGCTCAGCCGAAC-GGAGAGGCAGAATGCACAAGTCGGGGATCG
* * * *
22259724 ACCCGATCCCCCTCTGCGTGTTACCGGTCCC
127 A-CCGATCCCCC-CTACATGCTACCGATCCC
22259755 GCTACCACAACCCTCGGTCCAGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTACCACAACCCTCGGTCCAGTT-GGGCTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAAC
22259820 CCA
64 CCA
22259823 AGAAATAGGT
Statistics
Matches: 177, Mismatches: 41, Indels: 16
0.76 0.18 0.07
Matches are distributed among these distances:
156 5 0.03
157 96 0.54
158 9 0.05
159 66 0.37
160 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.18
Consensus pattern (155 bp):
GCTACCACAACCCTCGGTCCAGTTGGGCTTAGACTGGAATGAACTCCCTATGCCTAAGCCAACCC
ACAAAACGAACATGCGAGCGCTCAGCCGAACGGAGAGGCAGAATGCACAAGTCGGGGATCGACCG
ATCCCCCCTACATGCTACCGATCCC
Found at i:22261036 original size:26 final size:26
Alignment explanation
Indices: 22260995--22261047 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22260985 CCAGTTAGAT
22260995 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22261021 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
22261047 C
1 C
22261048 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22261233 original size:26 final size:26
Alignment explanation
Indices: 22261204--22261254 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
22261194 CCGATCTGAT
22261204 CTTAGAC-TGGAAATGAACTCCGTATG
1 CTTAGACATGG-AATGAACTCCGTATG
*
22261230 CTTAGACATGGAATGAACTCTGTAT
1 CTTAGACATGGAATGAACTCCGTAT
22261255 CCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22263005 original size:8 final size:9
Alignment explanation
Indices: 22262982--22263006 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
22262972 CATGTGGGCA
22262982 CACCCCCTG
1 CACCCCCTG
22262991 CACCCCCTG
1 CACCCCCTG
22263000 CACCCCC
1 CACCCCC
22263007 AATCACGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.72, G:0.08, T:0.08
Consensus pattern (9 bp):
CACCCCCTG
Found at i:22263170 original size:26 final size:26
Alignment explanation
Indices: 22263132--22263184 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22263122 GGCTCAAACT
*
22263132 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
22263158 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
22263184 C
1 C
22263185 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:22263697 original size:26 final size:26
Alignment explanation
Indices: 22263668--22263720 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22263658 CTGGTCTGAT
*
22263668 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
22263694 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
22263720 C
1 C
22263721 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22264183 original size:26 final size:26
Alignment explanation
Indices: 22264154--22264206 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
22264144 TCGGTCTGAT
22264154 CTTAGAC-TGGGAATGAACTTC-GTATG
1 CTTAGACAT-GGAATGAAC-TCAGTATG
22264180 CTTAGACATGGAATGAACTCAGTATG
1 CTTAGACATGGAATGAACTCAGTATG
22264206 C
1 C
22264207 CTAAGCAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 22 0.88
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCAGTATG
Found at i:22264525 original size:486 final size:486
Alignment explanation
Indices: 22263623--22264559 Score: 1186
Period size: 486 Copynumber: 1.9 Consensus size: 486
22263613 CATGCTGCTG
*
22263623 ATCCTGCTGTTGGTCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
1 ATCCTGCTGCTGGTCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* * *
22263688 TGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCG
66 TGTATGCTTAGACATGGAATGAACTCAGTATGCCTAAGCAAACCCACGAAACGAGCGTGCAGGCG
** ** * * **** **
22263753 CTCAGTCGGTCGAGAGGCAGAATGCATAAGCCGAGGATTGGCTTGATCCCCTCCTACGTGCTGCC
131 CTCAACCGACCGAGAGACAGAATGCACAAGCCGAGGACCAACCCGATCCCCTCCTACGTGCTGCC
* * * ** * *
22263818 GGTCCTGCTGTCACAACACCTGGTCCGATCTGATCTTTTACTGGGAATGAAGTCCGTATGCCTAA
196 GATCCTACTGTCACAACACCTGGTCAGATCTGATCTTGGACTGGAAATGAACTCCGTATGCCTAA
* * * * * * **
22263883 GCCAACCCATGAAACAAGCGTTCAGGCACTGAGCCGGTCGAAGAGGCATAATGCGTAAGTTGGGG
261 GCCAACCCACGAAACAAGCATACAGGCACTGAGCAGGCCGAAGAGGCATAATGCGCAAGCCGGGG
* * * * **
22263948 ATCGACCTGGTCCCCCTCTACGTCCTATCGGTCTCGCTGCCACAACCCTCGATCTGGTTAGGGCT
326 ATCGACCTGATCCCCCTCTACGTCCTATCGATATCGCTACCACAACCCTCGATCTGACTAGGGCT
22264013 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACCAGCGTACGGGCGCTCAACCG
391 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACCAGCGTACGGGCGCTCAACCG
22264078 AGGATCGGCCCAATCCCCCTGCGTGCTATCA
456 AGGATCGGCCCAATCCCCCTGCGTGCTATCA
* * * *
22264109 ATCCTGCTGCTGGTCCTGCTGCCGCAACCGTCGAT-TCGGTCTGATCTTAGACTGGGAATGAACT
1 ATCCTGCTGCTGGTCCTGCTACCACAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACT
22264173 -TCGTATGCTTAGACATGGAATGAACTCAGTATGCCTAAGCAAACCCACGAAACGAGCGTGCAGG
65 CT-GTATGCTTAGACATGGAATGAACTCAGTATGCCTAAGCAAACCCACGAAACGAGCGTGCAGG
* * * * * *
22264237 TGCTCAACCGACCGGTGAGATAGAATGCACAAGCCGGGGACCAACCCGGTCCCCT-CTGCGTGCT
129 CGCTCAACCGACC-GAGAGACAGAATGCACAAGCCGAGGACCAACCCGATCCCCTCCTACGTGCT
* *
22264301 GTCGATCCTACTGTCACAAC-CCTCGGTTCAG-TTTGATCTTGGACTGGAAATGAACTCCGTATG
193 GCCGATCCTACTGTCACAACACCT-GG-TCAGATCTGATCTTGGACTGGAAATGAACTCCGTATG
* * * * *
22264364 CCTAAGTCAACCCACGAAACAAGCATACGGGCGCTGAGCAGGCCGGAGATGCATAATGCGCAAGC
256 CCTAAGCCAACCCACGAAACAAGCATACAGGCACTGAGCAGGCCGAAGAGGCATAATGCGCAAGC
* * * * *
22264429 CGGGGATCGTTCC-GATGCCCCTCTACGTGCTGTCGATATCGCTACCACAACCCTCGGTCTGACT
321 CGGGGATCG-ACCTGATCCCCCTCTACGTCCTATCGATATCGCTACCACAACCCTCGATCTGACT
* * ** *
22264493 GGGGCTTGGACATGGAATGAACT-CGCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGC
385 AGGGCTTAGACATGGAATGAACTCCG-TATGCCTAAGCCAACCCATGAAACCAGCGTACGGGCGC
22264557 TCA
449 TCA
22264560 GTCGACCGGA
Statistics
Matches: 380, Mismatches: 64, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
485 7 0.02
486 339 0.89
487 34 0.09
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (486 bp):
ATCCTGCTGCTGGTCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
TGTATGCTTAGACATGGAATGAACTCAGTATGCCTAAGCAAACCCACGAAACGAGCGTGCAGGCG
CTCAACCGACCGAGAGACAGAATGCACAAGCCGAGGACCAACCCGATCCCCTCCTACGTGCTGCC
GATCCTACTGTCACAACACCTGGTCAGATCTGATCTTGGACTGGAAATGAACTCCGTATGCCTAA
GCCAACCCACGAAACAAGCATACAGGCACTGAGCAGGCCGAAGAGGCATAATGCGCAAGCCGGGG
ATCGACCTGATCCCCCTCTACGTCCTATCGATATCGCTACCACAACCCTCGATCTGACTAGGGCT
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACCAGCGTACGGGCGCTCAACCG
AGGATCGGCCCAATCCCCCTGCGTGCTATCA
Found at i:22264761 original size:13 final size:13
Alignment explanation
Indices: 22264743--22264768 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22264733 GTAGGCACTC
22264743 AACCGCCCGAAGA
1 AACCGCCCGAAGA
22264756 AACCGCCCGAAGA
1 AACCGCCCGAAGA
22264769 GGTAGAATGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.38, G:0.23, T:0.00
Consensus pattern (13 bp):
AACCGCCCGAAGA
Found at i:22266638 original size:159 final size:157
Alignment explanation
Indices: 22266342--22266834 Score: 397
Period size: 159 Copynumber: 3.1 Consensus size: 157
22266332 CTTAGACATA
* * * *
22266342 GAATGAACTACGTATGCTTAAGCCAACTCACGAAACGAGCGTGCGGG---TGATCCGCTAGTCGG
1 GAATGAACT-CCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTCCTGAGCCG--A-TCGG
* ** * * * * * * *
22266404 AGAGGTAGAA-ATTGCAAGCTGGGGA-CCGACCCAGTCCCCCCCTCCATGCTGTCGATCCTACTA
62 AGAGGCAGAATA-CACAAGCCGGGGATCAG-CCCGGT-CCCCCCTGCATGCTGCCGATCCTGCTG
* ** *
22266467 TCGTAACCCTCGGTCCGGTCCGATGTTAGACTGG
124 CCACAAACCTCGGTCCGGTCCGATGTTAGACTGG
* * *
22266501 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTGAGCCGATCGGAGA
1 GAATGAACTCC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTCCTGAGCCGATCGGAGA
* * * * * * * * *
22266566 GGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCTTCTGCATGCTGTCGGTCTTGCTGCCACA
65 GGCAGAATACACAAGCCGGGGATCAGCCCGGTCCCC-CCTGCATGCTGCCGATCCTGCTGCCACA
* ** * **
22266631 AAGCTCGGTCC-AACTGGGGCTTAGACAT-G
129 AACCTCGGTCCGGTCCGATG-TTAGAC-TGG
* * * * *
22266660 GAACGAACTACCTATGCCTAGGCCAACCCATGAAACGGGCGTGCGGGTCCTTAGCCGATCGGAGA
1 GAATGAACT-CCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTCCTGAGCCGATCGGAGA
* * *
22266725 GGCAGAATACACAAGCCGGGGATCAGCCTGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAA
65 GGCAGAATACACAAGCCGGGGATCAGCCCGGTCCCCCCTGCATGCTGCCGATCCTGCTGCCACAA
* * *
22266790 CCCTCGATCCGGTCCGATCTTAGACTGG
130 ACCTCGGTCCGGTCCGATGTTAGACTGG
22266818 GAATGAACTCCTTATGC
1 GAATGAACTCC-TATGC
22266835 TTAGACTGGG
Statistics
Matches: 261, Mismatches: 60, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
157 3 0.01
158 58 0.22
159 188 0.72
160 6 0.02
162 6 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
GAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTCCTGAGCCGATCGGAGAG
GCAGAATACACAAGCCGGGGATCAGCCCGGTCCCCCCTGCATGCTGCCGATCCTGCTGCCACAAA
CCTCGGTCCGGTCCGATGTTAGACTGG
Found at i:22267132 original size:171 final size:170
Alignment explanation
Indices: 22266833--22267463 Score: 505
Period size: 171 Copynumber: 3.8 Consensus size: 170
22266823 AACTCCTTAT
* * *
22266833 GCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAG
1 GCTTAGACTGGGAATGAACTC-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * *
22266898 CCGGTCAAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTTCGTGCTGTCGAT-
65 CCGGTCAAAGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTTCGTGCTGTCGATC
* * ** *
22266962 CTCACTGCTGGTCCCGCTATCACAACCCTTGGTCCGGTTGGG
130 CT-ACTGCTGGTCCCGCTACCACAACCCTCGGTCCGGTCCGA
* *
22267004 GCTTAGACAT-GGAATGAACTGCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACT-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* ** *
22267068 GTCGGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGATCCCCCT-TT-GTGCGTTGTCG
64 GCCGGTCAAAGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTTCGTGC--TGTCG
* * * *
22267131 ATCCTGCTGCTGGTCCTGCTACCGCAACCCTCGGTCTGGTCCGA
127 ATCCTACTGCTGGTCCCGCTACCACAACCCTCGGTCCGGTCCGA
* * * * * * *
22267175 TCTTAGATTGGGAATAAACTCCGTATGCCTAAGCCAA-CTACGAAACGAGCGTGCGGGCGATCAA
1 GCTTAGACTGGGAATGAACT-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
*** ** * ** * * *
22267239 CCAACCGGAGAGGCAGAAA-GCACAAGCCG-GGGGCCGACTCGATCCTCCC-CTGCGTGCTGTCG
65 CCGGTCAAAGAGGCA-AAATGCGCAAGCCGAGGATCAG-CCCGATCC-CCCTCTTCGTGCTGTCG
* *
22267301 AT-C--CTGCT-G--CCG-TA--AC--CCTTC-GTTCGGTCCGA
127 ATCCTACTGCTGGTCCCGCTACCACAACCCTCGGTCCGGTCCGA
* * ** * *
22267333 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACTGGGAATGAACT-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
** * * * * * *
22267398 CCGGTCGGAGAGGCAGAATGCACAAG-CTAGGGATCGGCCCGGTCCCCCT-TACGTGCTGTCGAT
65 CCGGTCAAAGAGGCAAAATGCGCAAGCCGA-GGATCAGCCCGATCCCCCTCTTCGTGCTGTCGAT
22267461 CCT
129 CCT
22267464 GCTTCTGTAA
Statistics
Matches: 378, Mismatches: 64, Indels: 47
0.77 0.13 0.10
Matches are distributed among these distances:
158 62 0.16
159 53 0.14
160 4 0.01
161 1 0.00
163 2 0.01
164 2 0.01
166 1 0.00
167 5 0.01
169 9 0.02
170 58 0.15
171 173 0.46
172 8 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (170 bp):
GCTTAGACTGGGAATGAACTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGGTCAAAGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTTCGTGCTGTCGATCC
TACTGCTGGTCCCGCTACCACAACCCTCGGTCCGGTCCGA
Found at i:22267453 original size:158 final size:157
Alignment explanation
Indices: 22267144--22267510 Score: 430
Period size: 158 Copynumber: 2.3 Consensus size: 157
22267134 CTGCTGCTGG
* * * *
22267144 TCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATAAACTCCGTATGCCTAAGC
1 TCCTGCTACCGTAACCCTCGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
22267209 CAACTACGAAACGAGCGTGCGGGCGATCAACCAACCGGAGAGGCAGAAAGCACAAGCCGGGGGCC
65 CAACCACAAAACGAGCGTGCGGGCGATCAACCAACCGGAGAGGCAGAAAGCACAAGCCAGGGACC
* *
22267274 GACTCGATCCTCCCCTGCGTGCTGTCGA
130 GACCCGATCCTCCCCTACGTGCTGTCGA
* *
22267302 TCCTGCTGCCGTAACCCTTCGTTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
1 TCCTGCTACCGTAACCC-TCGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *** * * *
22267367 CAACCCATAAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGCACAAGCTAGGGAT
65 CAA-CCACAAAACGAGCGTGCGGGCGATCAACCAACCGGAGAGGCAGAAAGCACAAGCCAGGGAC
* * *
22267432 CGGCCCGGTCC-CCCTTACGTGCTGTCGA
129 CGACCCGATCCTCCCCTACGTGCTGTCGA
* * * * * *
22267460 TCCTGCTTCTGTAACCCTCGATCCAGTTCAATCTTAGACTGGGAATGAACT
1 TCCTGCTACCGTAACCCTCG-TTCGGTCCGATCTTAGACTGGGAATGAACT
22267511 TCATATGCTT
Statistics
Matches: 176, Mismatches: 30, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
157 3 0.02
158 111 0.63
159 62 0.35
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (157 bp):
TCCTGCTACCGTAACCCTCGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
AACCACAAAACGAGCGTGCGGGCGATCAACCAACCGGAGAGGCAGAAAGCACAAGCCAGGGACCG
ACCCGATCCTCCCCTACGTGCTGTCGA
Found at i:22267521 original size:26 final size:26
Alignment explanation
Indices: 22267492--22267544 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22267482 CCAGTTCAAT
22267492 CTTAGACTGG-GAATGAACTTCATATG
1 CTTAGACTGGAG-ATGAACTTCATATG
*
22267518 CTTAGACTGGAGATGAACTTCGTATG
1 CTTAGACTGGAGATGAACTTCATATG
22267544 C
1 C
22267545 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTTCATATG
Found at i:22267726 original size:26 final size:26
Alignment explanation
Indices: 22267688--22267740 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22267678 CCGGTCTGAT
*
22267688 CTTAGACAGGGAATCAACTTTGTATG
1 CTTAGACAGGGAATCAACTCTGTATG
* *
22267714 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACAGGGAATCAACTCTGTATG
22267740 C
1 C
22267741 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACAGGGAATCAACTCTGTATG
Found at i:22268194 original size:696 final size:685
Alignment explanation
Indices: 22267173--22269683 Score: 2487
Period size: 696 Copynumber: 3.6 Consensus size: 685
22267163 GGTCTGGTCC
* * * * *
22267173 GATCTTAGATTGGGAATAAACTCCGTATGCCTAAGCCAA-CTACGAAACGAGCGTGCGGGCGA-T
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGC-ACT
* * * * * * * * * * * *
22267236 CAACCAACCGGAGAGGCAGAAAGCACAAGCCGGGG-GCCGACTCGATCCTCC-CCTGCGTGCTGT
65 GAGCCGATCGGAGAGGCATAATGCACAAGCCGGGGATCAG-CCCGATCC-CCTTCTACGTGCTGC
* ** * * **
22267299 CGATCCTGCTGCCGTAACCCTTCGTTC-GG-TCCGATCTTAGAC-TAGGAATGAACTC-CGTATG
128 CGGTCCT-CTGCCACAACCC-TCGGTCTGGCT-GGGGCTTAGACAT-GGAATGAACTCAC-TATG
** * * * **
22267360 CCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGCACAAGC
188 CCTAA-CCAACCCACGAAACGGGTGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGC
* * * * * * * * *
22267425 TAGGGATCGGCCCGGTCCCCCTTACGTGCTGTCGATCCTGCTTCTGTAACCCTCGATCCAGT-TC
252 -CGGGATCGGCTCGATCCCCCCTACGTGCT-TCGATCCTGCTGCCGCAACCCTCGGTCCGGTCT-
* * * * *
22267489 AATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGAGATGAACTTCGTATGCCTAAGTCAA
314 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* ** * **
22267554 CCCACGAAACGAGCGTGCAGGTGCTCAGTCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGA
379 CCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAAAGAGGCAGAATGCACAAGCCGGGGATCGA
* * * *
22267619 TC-CGATCCCTCATGCGTGCTGCCGATGTAGCTATAGGTCTTGCTGTCGCAAACCTCGATCCGGT
444 GCTCGATCCCTC-TGCGTGCTGCCGATCT-GCTAT-GGTCCTGCTGTCGCAACCCTCGATCCGGT
22267683 CTGATCTTAGACAGGGAATCAACTTTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCC
506 C-GATCTTAGACA-GGAAT-AAC--TGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCC
* * *
22267748 AACCCATGAAATGAGCATGCGGGCTCTGAACCGGCCGGAGAGGTAGAATGCACAAGTCAGGGACC
566 AACCCACGAAATGAGCGTGCGGGCTCTG-ACCGGCCGGAGAGGTAGAATGCACAAGTCAGGGATC
*
22267813 GGCCCGATCCCTCCTGCGTGCTGTCGATCCTGCTATCGTAA-ACCTCAGTCCGATCT
630 GGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTATCGTAACA-CTCAGTCCGATCT
* * *
22267869 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTG
* * *
22267934 AGCCGATCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGATCCCCTTCTGCGTGCTGCCGG
66 AGCCGATCGGAGAGGCATAATGCACAAGCCGGGGATCAGCCCGATCCCCTTCTACGTGCTGCCGG
* *
22267999 TCTCTCTGCCACAACCGTCGGTCTGTCTGGGGCTTAGACATGGAATGAACTCACT-TGGCCTAAC
131 TC-CTCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCACTAT-GCCTAAC
* * * *
22268063 CAACCCACGAAACGGGTGTGCGGGCGCTCAGTCGGCCGGAGAGGCATAATGCGTAATCCAGGGAT
194 CAACCCACGAAACGGGTGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCC-GGGAT
* ** * *
22268128 TGGCTCGATCCCCCCTACGTGCTATCGATCCTATTGCCGCAACCCTTGGTCTGGTCTGATCTTAG
258 CGGCTCGATCCCCCCTACGTGCT-TCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAG
* *
22268193 ACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
322 ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * ** ** * *
22268258 ATGAGCATGCGGGCACTCAACCGACCAAAGAGGTAGAATGCGTAAGCTAGGGATTG-GCTCGCTC
387 ACGAGCGTGCGGGCACTCAGCCGACCAAAGAGGCAGAATGCACAAGCCGGGGATCGAGCTCGATC
* ** * * * *
22268322 CCCCTTATGTGCTGTCGATCCTGCTGCTGGTCCTGCTATCGCAACCCT-TAGTCCGGTCCGATCT
452 CCTC-TGCGTGCTGCCGAT-CTGCT-ATGGTCCTGCTGTCGCAACCCTCGA-TCCGGT-CGATCT
**
22268386 TAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC
512 TAGAC-AGGAAT-AACT--GTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAC
* ** * * *
22268451 GAAACGAGCGTGCAGGTGCTCTG-TTGGCTGGAGAGGTAGAATGCATAAGTCGGGGATCGGCCCG
573 GAAATGAGCGTGC-GG-GCTCTGACCGGCCGGAGAGGTAGAATGCACAAGTCAGGGATCGGCCCG
* * * *
22268515 GTCCCCCCTGCGTGCTGTCGATACTGCTATCGTAACACTCAGTCTGGTCT
636 ATCCCCCCTGCGTGCTGTCGATCCTGCTATCGTAACACTCAGTCCGATCT
* * * *
22268565 GATCTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAACGTTTGGGCACAG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTG
* * * * *
22268630 AGTCGATCGGAGAGGCATAATGCATAAGCCAGGGATC-GACCCGATCCCCCTCTACGTGCTACCG
66 AGCCGATCGGAGAGGCATAATGCACAAGCCGGGGATCAG-CCCGATCCCCTTCTACGTGCTGCCG
* * * * *
22268694 GTCCCGCTGCCATAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAA
130 GT-CCTCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCACTATGCCT-AA
* * * ** *
22268759 CCAACCCACGAAACGGGCGTGCAGGTGCTCAGCCGGTTTGAGAGGCAGAATGCGCAAGCCGGGGA
193 CCAACCCACGAAACGGGTGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCC-GGGA
* * ** * * * *
22268824 TCGGCCCGATCCCCCCTACATGCTGTCGATCCTGCTGTTGCAACCCTCGATCCGATCCGATCATA
257 TCGGCTCGATCCCCCCTACGTGCT-TCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTA
* * *
22268889 GACTGGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTCTGTATGCCTAAGTCAACACACGA
321 GACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
* **** * ** * * *
22268954 AACAAGCGTGCGGGCACTCAGCCGGTTGAAGAGGCATAATGCGTAAGACGGAGAT-TAGCTCGAT
386 AACGAGCGTGCGGGCACTCAGCCGACCAAAGAGGCAGAATGCACAAGCCGGGGATCGAGCTCGAT
* * **
22269018 CCCCCTCTGCGTGCTGCCGATCCCGCTATCGGTCCTACTGTCATAACCCTCGATCC-G--G---T
451 --CCCTCTGCGTGCTGCCGAT-CTGCTAT-GGTCCTGCTGTCGCAACCCTCGATCCGGTCGATCT
* * *
22269077 T-----GG-------G---GCTTAGACATGGAATGATCTCTGTATCCCTAAGCCAACCCACCAAA
512 TAGACAGGAATAACTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAA
* * * * * * * * *
22269127 TGAGCGTACGGGCGCTCAGCCGGCCGAAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCC
577 TGAGCGTGCGGGCTCTGA-CCGGCCGGAGAGGTAGAATGCACAAGTCAGGGATCGGCCCGATCCC
* * * * *
22269192 CCCTGCGTGCTATCGATCCTGCTGTCGCAACACTCGGTCC-AGTTT
641 CCCTGCGTGCTGTCGATCCTGCTATCGTAACACTCAGTCCGA-TCT
* *
22269237 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTTCGGGCATTG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTG
* * *
22269302 AGCC-AGCTGGAGAGGCATAATGCACAAGCCGGGGATCAACCCGAT-CCCTCTCTACGTGCTGTC
66 AGCCGATC-GGAGAGGCATAATGCACAAGCCGGGGATCAGCCCGATCCCCT-TCTACGTGCTGCC
* *
22269365 GGTCCTACTGCCACAACCCTCGGTATGGCTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAA
129 GGTCCT-CTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCACTATGCCTAA
** *
22269430 GCCAACCCACGAAACAAGTGTGCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGTAAGCCGAGG
193 -CCAACCCACGAAACGGGTGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCG-GG
* * * * *
22269495 ATCGGTTTCG-TCCCCTCTGCGTGCTGCTGATCCTGCTGCCGCAACCCTCGGTCCAGTCTGATCT
256 ATCGG-CTCGATCCCCCCTACGTGCTTC-GATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
* * * *
22269559 TAGACTAGGAATGAACTCCTTATGCTTAGACTGGGGATGAACTCCGTTTGCCTAAGTCAACCCAT
319 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * *
22269624 GAAACGAGCGTGTGGACGCTCAGCCGACTAAAGAGGCAGGATGCACAAGCCGGGGATCGA
384 GAAACGAGCGTGCGGGCACTCAGCCGACCAAAGAGGCAGAATGCACAAGCCGGGGATCGA
22269684 ACGGGTGGTA
Statistics
Matches: 1495, Mismatches: 276, Indels: 111
0.79 0.15 0.06
Matches are distributed among these distances:
670 4 0.00
671 13 0.01
672 479 0.32
673 3 0.00
675 1 0.00
685 2 0.00
691 2 0.00
694 2 0.00
695 3 0.00
696 604 0.40
697 329 0.22
698 48 0.03
699 5 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (685 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTG
AGCCGATCGGAGAGGCATAATGCACAAGCCGGGGATCAGCCCGATCCCCTTCTACGTGCTGCCGG
TCCTCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCACTATGCCTAACCA
ACCCACGAAACGGGTGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCGGGATCGG
CTCGATCCCCCCTACGTGCTTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
GCGTGCGGGCACTCAGCCGACCAAAGAGGCAGAATGCACAAGCCGGGGATCGAGCTCGATCCCTC
TGCGTGCTGCCGATCTGCTATGGTCCTGCTGTCGCAACCCTCGATCCGGTCGATCTTAGACAGGA
ATAACTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGC
GGGCTCTGACCGGCCGGAGAGGTAGAATGCACAAGTCAGGGATCGGCCCGATCCCCCCTGCGTGC
TGTCGATCCTGCTATCGTAACACTCAGTCCGATCT
Found at i:22268224 original size:26 final size:26
Alignment explanation
Indices: 22268188--22268240 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22268178 CTGGTCTGAT
*
22268188 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22268214 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22268240 C
1 C
22268241 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22268342 original size:184 final size:190
Alignment explanation
Indices: 22268030--22268459 Score: 457
Period size: 196 Copynumber: 2.3 Consensus size: 190
22268020 TCTGTCTGGG
* ** *
22268030 GCTTAGACATGGAATGAACT-CACT-TGGCCTAA-CCAACCCACGAAACGGGTGTGCGGGCGCTC
1 GCTTAGACATGGAATGAACTCCA-TAT-GCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTC
** * ** * * *
22268092 AGTCGGCCGGAGAGGCATAATGCGTAATCCAGGGATTGGCTCGATCCCCCCTACGTGCTATCGA-
64 AACCGACCAAAGAGGTAGAATGCGTAAGCCAGGGATTGGCTCGATCCCCCCTACGTGCTATCGAC
* * * * *
22268156 T-C-CT-AT-TGC-CGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTAT
129 TGCGCTGATCTGCTCGCAACCCTTAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTAT
* * * * *
22268213 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCACTCA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCA
* * * * *
22268277 ACCGACCAAAGAGGTAGAATGCGTAAGCTAGGGATTGGCTCGCTCCCCCTTATGTGCTGTCGATC
65 ACCGACCAAAGAGGTAGAATGCGTAAGCCAGGGATTGGCTCGATCCCCCCTACGTGCTATCGA--
*
22268342 CTGCTGCTGGTCCTGCTATCGCAACCCTTAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGT
128 CTGC-GCTGAT-CTGC--TCGCAACCCTTAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGT
22268407 AT
189 AT
22268409 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGC
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGC
22268460 GTGCAGGTGC
Statistics
Matches: 197, Mismatches: 33, Indels: 21
0.78 0.13 0.08
Matches are distributed among these distances:
182 1 0.01
183 24 0.12
184 76 0.39
187 1 0.01
188 1 0.01
190 2 0.01
191 1 0.01
193 3 0.02
196 87 0.44
197 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.23
Consensus pattern (190 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAA
CCGACCAAAGAGGTAGAATGCGTAAGCCAGGGATTGGCTCGATCCCCCCTACGTGCTATCGACTG
CGCTGATCTGCTCGCAACCCTTAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:22268413 original size:26 final size:26
Alignment explanation
Indices: 22268384--22268436 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22268374 CCGGTCCGAT
*
22268384 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
22268410 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
22268436 C
1 C
22268437 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:22268532 original size:196 final size:196
Alignment explanation
Indices: 22268165--22268542 Score: 445
Period size: 196 Copynumber: 1.9 Consensus size: 196
22268155 ATCCTATTGC
* * * * * *
22268165 CGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGA
1 CGCAACCCTTAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * *
22268230 ACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCACTCAACCGACCAAAGAGGTAGA
66 ACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCAACCGACCAAAGAGGTAGA
* * * * * *
22268295 ATGCGTAAGCTAGGGATTGGCTCGCTCCCCCTTATGTGCTGTCGATCCTGCTGCTGGTCCTGCTA
131 ATGCATAAGCTAGGGATCGGCCCGCTCCCCCCTACGTGCTGTCGATACTGCTGCTGGTCCTGCTA
22268360 T
196 T
22268361 CGCAACCCTTAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACAT-GGAATG
1 CGCAACCCTTAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC-TGGGAATG
* ** **** * ***
22268425 AACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCTGTTGGCTGGAGAGGTAG
65 AACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCAACCGACCAAAGAGGTAG
* * *
22268490 AATGCATAAG-TCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATACTGCT
130 AATGCATAAGCT-AGGGATCGGCCCGCTCCCCCCTACGTGCTGTCGATACTGCT
22268543 ATCGTAACAC
Statistics
Matches: 149, Mismatches: 31, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
195 1 0.01
196 147 0.99
197 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (196 bp):
CGCAACCCTTAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGA
ACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCAACCGACCAAAGAGGTAGA
ATGCATAAGCTAGGGATCGGCCCGCTCCCCCCTACGTGCTGTCGATACTGCTGCTGGTCCTGCTA
T
Found at i:22268802 original size:159 final size:158
Alignment explanation
Indices: 22268409--22268847 Score: 447
Period size: 159 Copynumber: 2.8 Consensus size: 158
22268399 AACTCCGTAT
*
22268409 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCTG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAG
* * * * * * **
22268474 TTGGCTGGAGAGGTAGAATGCATAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATAC
66 TCGGTTGGAGAGGCAGAATGCATAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTACCGATAC
* * * *
22268539 TGCTATCGTAACACTCAGTCTGGTCTGA
131 CGCTACCATAACACTCAGTCCGGTCTGA
* * * * ** *
22268567 TCTTAGAC-TGGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAACGT-TTGG-GCACA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTC-
* * * * *
22268629 GAGTCGATCGGAGAGGCATAATGCATAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCTACCG
64 -AGTCGGTTGGAGAGGCAGAATGCATAAGCCGGGGATCGGCCCGATCCCCC-CTACGTGCTACCG
* * * * *
22268694 GTCCCGCTGCCATAACCCTC-GATCCGG-CTGGG
127 ATACCGCTACCATAACACTCAG-TCCGGTCT-GA
* * *
22268726 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAG
* * ** *
22268791 CCGGTTTGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACATGCT
66 TCGGTTGGAGAGGCAGAATGCATAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCT
22268848 GTCGATCCTG
Statistics
Matches: 223, Mismatches: 49, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
156 3 0.01
157 3 0.01
158 97 0.43
159 114 0.51
160 3 0.01
161 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAG
TCGGTTGGAGAGGCAGAATGCATAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTACCGATAC
CGCTACCATAACACTCAGTCCGGTCTGA
Found at i:22268916 original size:26 final size:26
Alignment explanation
Indices: 22268887--22268937 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
22268877 GATCCGATCA
22268887 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
* * *
22268913 TAGATTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
22268938 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:22269330 original size:158 final size:156
Alignment explanation
Indices: 22269082--22269583 Score: 483
Period size: 158 Copynumber: 3.2 Consensus size: 156
22269072 CCGGTTGGGG
* * * * *
22269082 CTTAGACATGGAATGATCTCTGTATCCCTAAGCCAACCCACCAAATGAGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAGC
* * * * *
22269147 CGGCCGAAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCT
66 CAGCTGGAGAGGCAGAATGCGCAAGCC-GGGATCGACCCGATCCCCTCTGCGTGCT-TCGATCCT
* *
22269212 GCTGTCGCAACACTCGGTCCAGTTTGAT
129 GCTGCCGCAACCCTCGGTCCAGTTTGAT
* * ** *
22269240 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTTCGGGCATTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
* * * * *
22269304 CCAGCTGGAGAGGCATAATGCACAAGCCGGGGATCAACCCGATCCCTCTCTACGTGCTGTCGGTC
65 CCAGCTGGAGAGGCAGAATGCGCAAGCC-GGGATCGACCCGATCCC-CTCTGCGTGCT-TCGATC
* * *** * * **
22269369 CTACTGCCACAACCCTCGGTATGGCTGGGG
127 CTGCTGCCGCAACCCTCGGTCCAGTTTGAT
* * * *
22269399 CTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
* *** *
22269463 CCAG-TCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGTTTCG-TCCCCTCTGCGTGCTGCTGAT
65 CCAGCT-GGAGAGGCAGAATGCGCAAGCCG-GGATC-GACCCGATCCCCTCTGCGTGCTTC-GAT
*
22269526 CCTGCTGCCGCAACCCTCGGTCCAGTCTGAT
126 CCTGCTGCCGCAACCCTCGGTCCAGTTTGAT
*
22269557 CTTAGAC-TAGGAATGAACTCCTTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
22269584 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 61, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.01
158 148 0.54
159 117 0.43
160 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAGC
CAGCTGGAGAGGCAGAATGCGCAAGCCGGGATCGACCCGATCCCCTCTGCGTGCTTCGATCCTGC
TGCCGCAACCCTCGGTCCAGTTTGAT
Found at i:22269438 original size:159 final size:158
Alignment explanation
Indices: 22269042--22269497 Score: 486
Period size: 158 Copynumber: 2.9 Consensus size: 158
22269032 TGCCGATCCC
* * * *
22269042 GCTATCGGTCCTACTGTCATAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGATCTCTGTAT
1 GCTATCGGTCCTACTGTCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCTCTAT
* * * * * * *
22269107 CCCTAAGCCAACCCACCAAATGAGCGTACGGGCGCTCAGCCGGCCGAAAAGGCAGAATGCGCAAG
66 GCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAGCCAGCTGGAGAGGCAGAATGCGCAAG
* * *
22269172 CCAGGGATCGACCCGATCCCCCCTGCGT
131 CCGGGGATCAACCCGATCCCCCCTACGT
* * * * * * **
22269200 GCTATCGATCCTGCTGTCGCAACACTCGGTCCAGTTTGATCTTAGAC-TGGGAATGAACTC-CGT
1 GCTATCGGTCCTACTGTCACAACCCTCGGTCCGGTTGGGGCTTAGACAT-GGAATGAACTCTC-T
* * ** * * *
22269263 ATGCCTAAGTCAACCCACAAAACGAGCGTTCGGGCATTGAGCCAGCTGGAGAGGCATAATGCACA
64 ATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAGCCAGCTGGAGAGGCAGAATGCGCA
*
22269328 AGCCGGGGATCAACCCGATCCCTCTCTACGT
129 AGCCGGGGATCAACCCGATCCC-CCCTACGT
* * ** *
22269359 GCTGTCGGTCCTACTGCCACAACCCTCGGTATGGCTGGGGCTTAGACATGGAATGAACTCTCTAT
1 GCTATCGGTCCTACTGTCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCTCTAT
* * * * *
22269424 GCCTAAGCCAACCCACGAAACAAGTGTGCGGGCGCTCAGCCAG-TCGGAGAGGCAGAATGCGTAA
66 GCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAGCCAGCT-GGAGAGGCAGAATGCGCAA
*
22269488 GCCGAGGATC
130 GCCGGGGATC
22269498 GGTTTCGTCC
Statistics
Matches: 237, Mismatches: 55, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
157 1 0.00
158 120 0.51
159 114 0.48
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTATCGGTCCTACTGTCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCTCTAT
GCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAGCCAGCTGGAGAGGCAGAATGCGCAAG
CCGGGGATCAACCCGATCCCCCCTACGT
Found at i:22270478 original size:26 final size:26
Alignment explanation
Indices: 22270449--22270501 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22270439 CCGGTTTGAT
22270449 CTTAGACTGGGA-ATGAACTCCGTATG
1 CTTAGACT-GGATATGAACTCCGTATG
22270475 CTTAGACTGGATATGAACTCCGTATG
1 CTTAGACTGGATATGAACTCCGTATG
22270501 C
1 C
22270502 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGATATGAACTCCGTATG
Found at i:22270895 original size:159 final size:157
Alignment explanation
Indices: 22270646--22271149 Score: 498
Period size: 159 Copynumber: 3.2 Consensus size: 157
22270636 TTGACGGGGG
* * *
22270646 CTTAGACATGGAATGAACTCCGAATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* *
22270711 CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGATCCCCCTCTACGTGCTGTCGATCC
66 CGACCGAAGAGGCAGAATGCGCAAGCCG-GGATCGGCTCGGTCCCCCTCTACGTGCTGTCGATCC
*
22270776 TACTGCCGTAACCCTCGGTCTGGTCTGAT
130 TACTGCCGTAACCCTCGGTC-AGTCTGAT
* * * * * *
22270805 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTACGGGCACTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
22270869 CCGATCGAAGAGGCATAATACGCAAGCCGGGAATCGACTCGGTCCCCCTCTACGTACTGTCGGTC
65 CCGACCGAAGAGGCAGAATGCGCAAGCCGGG-ATCGGCTCGGTCCCCCTCTACGTGCTGTCGATC
** * * * * **
22270934 C-AGCTGCCACAACCGTCGATCCGACTGGGG
129 CTA-CTGCCGTAACCCTCGGTCAGTCT-GAT
* * * *
22270964 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGTTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
22271029 CGGCC-AGAGAGGCAGAATGTGCAAGTCGGGGATTGGCCCGGTCCCCCCCTACGTGCTG-CTGAT
66 CGACCGA-AGAGGCAGAATGCGCAAG-CCGGGATCGGCTCGGTCCCCCTCTACGTGCTGTC-GAT
* * *
22271092 CCTGCTACCGTAACCCTCGGTCCAGTCTAAT
128 CCTACTGCCGTAACCCTCGGT-CAGTCTGAT
*
22271123 CTTGGAC-TGGGAACTG-ACTCCGTATGC
1 CTTAGACAT-GGAA-TGAACTCCGTATGC
22271150 TTAGACTAGG
Statistics
Matches: 273, Mismatches: 60, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
158 10 0.04
159 252 0.92
160 11 0.04
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCCGGGATCGGCTCGGTCCCCCTCTACGTGCTGTCGATCCT
ACTGCCGTAACCCTCGGTCAGTCTGAT
Found at i:22277288 original size:26 final size:26
Alignment explanation
Indices: 22277259--22277337 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
22277249 CTGGTCCGAT
* *
22277259 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
**
22277285 CTTAGACTAGGGTTGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
*
22277311 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
22277337 C
1 C
22277338 CTAAGTTAAC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:22277628 original size:369 final size:369
Alignment explanation
Indices: 22276949--22277672 Score: 852
Period size: 369 Copynumber: 2.0 Consensus size: 369
22276939 GATCTAAGAT
* * * * * *
22276949 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACTCAACGAGCGTTTGGGCGTTGAGCTTATCGG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGCAACGAGCGTTCGGGCGCTGAGCTGACCAG
** * * *
22277014 AGAGGCATAACGCGTAAGCTGGGGATCGATCTGGACCCCCTCTACGTACTGTCGGTCCCGCTGCC
66 AGAGGCATAACGCGTAAGCCAGGGATCGACCTGGACCCCCTCTACGTACTGCCGGTCCCACTGCC
* * * * *
22277079 ACAACCATCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCAAATCCAACCCACAA
131 ACAACCATCGATTCGACTGGGGCTTAGACATGGAATGAAATCCCTATGCCAAAGCCAACCCACAA
* * * * *
22277144 AACAAGCGTACGGGCACTCAGTCGGTCGAAGAGGCAGAATGTGTAAGCCGGGGGTCAGCCCAGTC
196 AACAAGCGTACGGGCACTCAGTCGGTAGAAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCAGTC
* * * * **
22277209 CCTCCTACGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATA
261 CCTCCTACGTGCTGCCAATCCTACTACCGCAACCCTCAATCTGGTCCGATCTTAGACTAGGAATA
*
22277274 AACTCCGTATGCTTAGACTAGGGTTGAACTTCGTATGCTTAGAC
326 AACTCCGTATGCTTAGACTAGGGATGAACTTCGTATGCTTAGAC
* * * *
22277318 TGGGAATGAACTTCGTATGCCTAAGTTAACCCACGGAATGAGCGTTCGGGCGCT-ACGCTGACCA
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGCAACGAGCGTTCGGGCGCTGA-GCTGACCA
* * * * * *
22277382 GAGAGGCATAATGCGTAAGCCAGGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCGGTCCCATTGC
65 GAGAGGCATAACGCGTAAGCCAGGGATCGACCTGGACCCCCTCTACGTACTGCCGGTCCCACTGC
* * *
22277447 CACAACCCTCGA-TCTGACTGGGGCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCAT
130 CACAACCATCGATTC-GACTGGGGCTTAGACATGGAATGAAATCCCTATGCCAAAGCCAACCCAC
* * * *
22277511 GAAAC-GGACGTGCGGGCGCTCAG-CTGGCTAG-AGAGGCAGAATGCGCAAGCCAGGGATC-GAC
194 AAAACAAG-CGTACGGGCACTCAGTC-GG-TAGAAGAGGCAGAATGCGCAAGCCAGGGATCAG-C
* * *
22277572 CC-GATCCC-CCTTGCGTGCTGCCAATCCTACTGCCGCAACCTTCAATCTGGTCCGATCTTAGAC
255 CCAG-TCCCTCC-TACGTGCTGCCAATCCTACTACCGCAACCCTCAATCTGGTCCGATCTTAGAC
* * * *
22277635 TGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACT
318 TAGGAATAAACTCCGTATGCTTAGACTAGGGATGAACT
22277673 CCATATGCCT
Statistics
Matches: 295, Mismatches: 52, Indels: 16
0.81 0.14 0.04
Matches are distributed among these distances:
368 9 0.03
369 284 0.96
370 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (369 bp):
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGCAACGAGCGTTCGGGCGCTGAGCTGACCAG
AGAGGCATAACGCGTAAGCCAGGGATCGACCTGGACCCCCTCTACGTACTGCCGGTCCCACTGCC
ACAACCATCGATTCGACTGGGGCTTAGACATGGAATGAAATCCCTATGCCAAAGCCAACCCACAA
AACAAGCGTACGGGCACTCAGTCGGTAGAAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCAGTC
CCTCCTACGTGCTGCCAATCCTACTACCGCAACCCTCAATCTGGTCCGATCTTAGACTAGGAATA
AACTCCGTATGCTTAGACTAGGGATGAACTTCGTATGCTTAGAC
Found at i:22277679 original size:26 final size:26
Alignment explanation
Indices: 22277628--22277680 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22277618 CTGGTCCGAT
**
22277628 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22277654 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
22277680 C
1 C
22277681 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22277819 original size:184 final size:184
Alignment explanation
Indices: 22277469--22277830 Score: 422
Period size: 184 Copynumber: 2.0 Consensus size: 184
22277459 TCTGACTGGG
* * * *
22277469 GCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAAATCCATATGCCTAAGCCAACCCACGAAACGGACATGCAGGCGCTCAG
* * *
22277534 CTGGCTAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTTGCGTGCTGCCAATCC
66 CTGGCCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGCCAATCC
* * * *
22277599 TACTGCCGCAACCTTCAATCTGGTCCGATCTTAGACTGGGAATGAACTCTGTAT
131 TACTACCGCAACCGTCAATCCGATCCGATCTTAGACTGGGAATGAACTCTGTAT
* * *
22277653 GCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAAC-GAGCATGCAGGCGCTC
1 GCTTAGACAT-GGAATGAAATCCATATGCCTAAGCCAACCCACGAAACGGA-CATGCAGGCGCTC
* * *** * * * * *
22277716 AGTTGGCCAGAGAGGCATAATGCACAAGTTGGGGATCGATCCGGTCCCCCCTGCGTGTTGTCGAT
64 AGCTGGCCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGCCAAT
* * ** * *
22277781 CCTACTACTGCAATCGTCGGTCCGATCTGATTTTAGACTGGGAATGAACT
129 CCTACTACCGCAACCGTCAATCCGATCCGATCTTAGACTGGGAATGAACT
22277831 GCATATGCCT
Statistics
Matches: 146, Mismatches: 30, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
183 3 0.02
184 143 0.98
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAAATCCATATGCCTAAGCCAACCCACGAAACGGACATGCAGGCGCTCAG
CTGGCCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGCCAATCC
TACTACCGCAACCGTCAATCCGATCCGATCTTAGACTGGGAATGAACTCTGTAT
Found at i:22278147 original size:159 final size:156
Alignment explanation
Indices: 22277654--22278495 Score: 651
Period size: 159 Copynumber: 5.3 Consensus size: 156
22277644 ACTCTGTATG
* * * * * * *
22277654 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGCTCAGT
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * *
22277719 TGGCCAGAGAGGCATAATGCACAAGTTGGGGATCGATCCGGTCCCCCCTGCGTGTTGTCGATCCT
66 CGGCCGGAGAGGCATAATGCACAAG-CGGGGATCGGCCCGGTCCCCCCTACGTG-CGTCGATCCT
* * * * * * * *
22277784 ACTACTGCAATCGTCGGTCCGATCTGAT
129 GCTGCCGCAACCCTCGATCTGGTCTGAT
* * * * * * * *
22277812 TTTAGACTGGGAATGAACTGCATATGCCTAAGTCAACCCATGAAAACGAGCGTGCAGGCGTTGAG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACG-AAACGAGCGTGCGGGCGCTCAG
* * * ** * * *
22277877 CCGGCCGAAGTGGCATAACGCGTAAGCCAGGGATCGGCCCGGTCCCCCTCTACGAGC-TAGATCC
65 CCGGCCGGAGAGGCATAATGCACAAG-CGGGGATCGGCCCGGTCCCCC-CTACGTGCGTCGATCC
* * * **
22277941 TG-TAGCCACAACACTCAGTTC-GG-CTGGGG
128 TGCT-GCCGCAACCCTC-GATCTGGTCT-GAT
*
22277970 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * *
22278034 TTGACCGGAGAGGTAGAATGCACAAGTCGGGGACCGGCCCGATCCCACCCTACGTGCGATCGATC
65 CCGGCCGGAGAGGCATAATGCACAAG-CGGGGATCGGCCCGGTCCC-CCCTACGTGCG-TCGATC
*
22278099 CTGCTGTCGCAACCCTCGATCTGGTCTGAT
127 CTGCTGCCGCAACCCTCGATCTGGTCTGAT
* * * *
22278129 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * **
22278194 CGACCGGAGAGGCATAATGCGCAAGCTAGGGATCGGCTCGGTCCCCCTCTGTGTGCTGTCGATCC
66 CGGCCGGAGAGGCATAATGCACAAGC-GGGGATCGGCCCGGTCCCCC-CTACGTGC-GTCGATCC
* * * * **
22278259 CGCGGCCACAACCCTCGGTCTGG-CTGGGG
128 TGCTGCCGCAACCCTCGATCTGGTCT-GAT
* * * * *
22278288 CTTAGACAT-GGAATGAACTCTCG-ATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCT
1 CTTAGAC-TGGGAATGAACT-TCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
22278351 GCCGGTCGGAGAGGCAGAATGCATAAGCTGAGGATCGGCCCAGTCCCCCCTACGTGCTGCCGATC
64 GCCGGCCGGAGAGGCATAATGCACAAGC-GGGGATCGGCCCGGTCCCCCCTACGTGC-GTCGATC
* * * *
22278416 CTGCTACCGTAACCTTC-AGTCTGATCTGAT
127 CTGCTGCCGCAACCCTCGA-TCTGGTCTGAT
* *
22278446 CTTAGACTGGGAATGAAC-TCTGTATGCCTAAGTCAACCCACAAAACGAGC
1 CTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCAACCCACGAAACGAGC
22278496 ATGTAGGTGC
Statistics
Matches: 536, Mismatches: 124, Indels: 48
0.76 0.18 0.07
Matches are distributed among these distances:
156 2 0.00
157 63 0.12
158 166 0.31
159 293 0.55
160 12 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCATAATGCACAAGCGGGGATCGGCCCGGTCCCCCCTACGTGCGTCGATCCTGC
TGCCGCAACCCTCGATCTGGTCTGAT
Found at i:22278841 original size:26 final size:26
Alignment explanation
Indices: 22278801--22278853 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22278791 CCGATGTGAT
*
22278801 CTTAGACTGGAAATGAACTTTGTATG
1 CTTAGACTGGAAATGAACTTCGTATG
22278827 CTTAGACATGG-AATGAACTTCGTATG
1 CTTAGAC-TGGAAATGAACTTCGTATG
22278853 C
1 C
22278854 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTTCGTATG
Found at i:22279196 original size:158 final size:154
Alignment explanation
Indices: 22278826--22279252 Score: 464
Period size: 158 Copynumber: 2.7 Consensus size: 154
22278816 AACTTTGTAT
* * * *
22278826 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGTGTACGGGCACTCAG
1 GCTTAGACATGGAATGAAC-TCCTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCACTCAG
* * * * * * ***
22278891 CCGATTGGAGAGGCAGAATGTGCAAGCTGAGAATCGGCCCGGTCCCCGCTGTGTGCTATCGATCT
65 CCGATCGGAGA-GTAGAATGCGCAAGCAG-GGATTGGCCCGGTCCCCGCTACATGCTATCGATCT
* * *
22278956 TGCTGTCGCAACCTCGGTCCGGTCTGA
128 TGCTGCCACAACCTCGGTCCAGTCTGA
* *
22278983 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCC-TATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCACTCA
* * *
22279047 GCCGATCGGAGAGTAATAATGCGCAAGTCAGGGATTGGCCCGGTCCCCATCTACATGCTATCGTT
64 GCCGATCGGAGAGT-AGAATGCGCAAG-CAGGGATTGGCCCGGTCCCC-GCTACATGCTATCGAT
*
22279112 AC-TGCTGCCACAACCCTCGGTCCAG-CTAGG
126 -CTTGCTGCCACAA-CCTCGGTCCAGTCT-GA
* * *
22279142 GCTTAGACATGGAATGAACTCCTATGCCTAAGTCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
1 GCTTAGACATGGAATGAACTCCTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCACTCAGC
* * *
22279207 CGACCGGAGAGGTAGAATGCGCAAGCCAGGGATTGACCTGGTCCCC
66 CGATCGGAGA-GTAGAATGCGCAAG-CAGGGATTGGCCCGGTCCCC
22279253 CTTTCGTGCA
Statistics
Matches: 228, Mismatches: 32, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
156 4 0.02
157 89 0.39
158 101 0.44
159 33 0.14
160 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.20
Consensus pattern (154 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCACTCAGC
CGATCGGAGAGTAGAATGCGCAAGCAGGGATTGGCCCGGTCCCCGCTACATGCTATCGATCTTGC
TGCCACAACCTCGGTCCAGTCTGA
Found at i:22279666 original size:367 final size:367
Alignment explanation
Indices: 22278939--22279675 Score: 772
Period size: 367 Copynumber: 2.0 Consensus size: 367
22278929 CCGGTCCCCG
22278939 CTGTGTGCTATCGATCTTGCTGTCGCAACCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
1 CTGTGTGCTATCGATCTTGCTGTCGCAACCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
* *** * * * *
22279004 CGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCACTGAGCCGATCGGAGAGTAATAATGC
66 CGTATGCCTAAGTCAACCCACGAAACGACCATACGGGCACTCAACCGATCGGAGAGTAAGAATGC
* * * * *
22279069 GCAAGTCAGGGATTGGCCCGGTCCCCATCTACATGCTATCGTTACTGCTGCCACAACCCTCGGTC
131 ACAAATCAGAGATTGGCCCGATCCCCATCTACATGCTATCGGTACTGCTGCCACAACCCTCGGTC
* * * ** * **
22279134 CAGCTAGGGCTTAGACATGGAATGAACTCCTATGCCTAAGTCAACCCATGAAACGGGCGTGCGGG
196 CAGCCAAGGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACAAAACAGGCGTGCGAC
* * * * * * * *
22279199 CGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCAGGGATTGACCTGGTCCCCCTTTCGTGCAG
261 CGCTCAGCCGACCGGAAAGGCAGAATACGCAAGCCAGGGATGGACCTGATCCCCCCTACGAGCAG
* ** * *
22279264 TCGATCCTGCTGTCGCAACCTTCGGTCCAGTTCAATCTTAGA
326 TCGATCCTACTACCGCAACCCTCGATCCAGTTCAATCTTAGA
*
22279306 CTGTGTGCT-TCGATAC-TGCTGTCGCAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAAC
1 CTGTGTGCTATCGAT-CTTGCTGTCGCAA-CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
* * * ** * *
22279369 TCTGTATGCCTAAGTCAACCCACGAAATGACCATACGGTCGTTCAACTGGTCGGAGAAGT-AGAA
64 TCCGTATGCCTAAGTCAACCCACGAAACGACCATACGGGCACTCAACCGATCGGAG-AGTAAGAA
** * * * * *
22279433 TGCACAAATC-GAGATCT-GTTCGATCCCCCTCTACGTGTTGTCGGT-CTCGCTGCCAGAACCCT
128 TGCACAAATCAGAGAT-TGGCCCGATCCCCATCTACATGCTATCGGTACT-GCTGCCACAACCCT
* *
22279495 CGGT-CTGACCAAGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCCACAAAACAGGC
191 CGGTCCAG-CCAAGGCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCACAAAACAGGC
** * * ** *
22279559 GTGCGACCGCTCAGTGGGCTGGAAAGGCAGAATACGCAAGCTGGGGATCGGTCC-GATCCCCCCT
254 GTGCGACCGCTCAGCCGACCGGAAAGGCAGAATACGCAAGCCAGGGAT-GGACCTGATCCCCCCT
* * **
22279623 ACGAGCTG-CTGATCCTACTACCGTAACCCTCGATCTGGTTCAATCTTAGA
318 ACGAGCAGTC-GATCCTACTACCGCAACCCTCGATCCAGTTCAATCTTAGA
22279673 CTG
1 CTG
22279676 GGAATGAACT
Statistics
Matches: 299, Mismatches: 62, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
365 4 0.01
366 81 0.27
367 208 0.70
368 6 0.02
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.23
Consensus pattern (367 bp):
CTGTGTGCTATCGATCTTGCTGTCGCAACCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
CGTATGCCTAAGTCAACCCACGAAACGACCATACGGGCACTCAACCGATCGGAGAGTAAGAATGC
ACAAATCAGAGATTGGCCCGATCCCCATCTACATGCTATCGGTACTGCTGCCACAACCCTCGGTC
CAGCCAAGGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACAAAACAGGCGTGCGAC
CGCTCAGCCGACCGGAAAGGCAGAATACGCAAGCCAGGGATGGACCTGATCCCCCCTACGAGCAG
TCGATCCTACTACCGCAACCCTCGATCCAGTTCAATCTTAGA
Found at i:22279696 original size:26 final size:26
Alignment explanation
Indices: 22279667--22279719 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22279657 CTGGTTCAAT
*
22279667 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22279693 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22279719 C
1 C
22279720 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22280808 original size:26 final size:26
Alignment explanation
Indices: 22280756--22280808 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22280746 CCGATCCAAT
*
22280756 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
22280782 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
22280808 C
1 C
22280809 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:22281061 original size:159 final size:155
Alignment explanation
Indices: 22280783--22281284 Score: 506
Period size: 159 Copynumber: 3.2 Consensus size: 155
22280773 CTCTGCATGC
* * * *
22280783 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAACC
* * * * * *
22280848 GACTAGAGAGGCAGAATGCGCAAGCCGAGGTTCAGCCTGGTCCCCCCTTACGTGCTGTCGATCCT
66 GAC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC-GATCCCCCC-TGCGTGCTGTCGATCCT
22280913 GCTACTGCAACCCTCGGTCCAATCCAATG
128 GCT-CTGCAACCCTCGGTCCAATCCAATG
* * *
22280942 TTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAAC
1 TTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAAC
* * * * *
22281006 CGATCGGAGAGGCATAATGCGCAACCCGGGGATCGGCTCGATCTCCCTCTGCGTGCTGTTGGTCC
65 CGA-CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC-CGATC-CCCCCTGCGTGCTGTCGATCC
* * *** ****
22281071 CGCTGTGACAACCCTCGGT-CTGGCTGGGG
127 TGCTCTG-CAACCCTCGGTCCAATCCAATG
* * *
22281100 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTACGGGTGCTCAAC
1 -TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAAC
* * * * * * *
22281165 CAGCCGGAGAGGCAGAAAGCGTAAGCCAGGGATCGGCCCGTTCCCCCCTGCGTGCTATCGATCTT
65 C-GACGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CCGATCCCCCCTGCGTGCTGTCGATCCT
* *
22281230 GCTGTTGCAACCCTCGGTCCAATCCAATC
128 GCT-CTGCAACCCTCGGTCCAATCCAATG
22281259 TTAGAC-TGGGAATGAACTCCATATGC
1 TTAGACAT-GGAATGAACTCCATATGC
22281285 TTAGACTAGG
Statistics
Matches: 275, Mismatches: 56, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 1 0.00
158 59 0.21
159 206 0.75
160 9 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (155 bp):
TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAACC
GACGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGATCCCCCCTGCGTGCTGTCGATCCTGCT
CTGCAACCCTCGGTCCAATCCAATG
Found at i:22281287 original size:26 final size:26
Alignment explanation
Indices: 22281258--22281313 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
22281248 CCAATCCAAT
22281258 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGACTAGGG-ATGAACTCCATATG
*
22281284 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCATATG
22281310 CTTA
1 CTTA
22281314 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:22282011 original size:26 final size:26
Alignment explanation
Indices: 22281973--22282023 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
22281963 GGCTCAAAAT
22281973 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
22281999 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
22282024 GCGTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:22282788 original size:159 final size:158
Alignment explanation
Indices: 22282350--22282806 Score: 420
Period size: 159 Copynumber: 2.9 Consensus size: 158
22282340 TACACAAACT
* * * *
22282350 CTCGGTCCGGCTAGGGCTTAGACAAGGAATGAACTTCGTACGCCTAAGCCAACACACGAAATGAG
1 CTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAG
* * * * * *
22282415 CGTGCGGGTGCTCAACCGACCGGAGAGGTAGAATACGCAAGCTGGGGATCGACCCGATCCCCCCT
66 CGTGCGGGTGCTCAGCCGGCCGAAGAGGCAAAATACGTAAGCTGGGGATCGACCCGATCCCCCCT
* *
22282480 ACGTGCTGTCAATCCTGCTGTCACAACC
131 ACGTGCTGTCAATCCCGCTGCCACAACC
* * * ** ** * * *
22282508 TTCGGTCC-GATCCGATCTTACTC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACG
1 CTCGGTCCGGCT-AGGGCTTAGACAT-GGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACG
*** * * * * * * *
22282571 AGCGTGCGGGCATTGAGCCGGTCAAAGAGGCATAATCCTTAAG-TCGAGGATCGACCCGATCCCC
64 AGCGTGCGGGTGCTCAGCCGGCCGAAGAGGCAAAATACGTAAGCT-GGGGATCGACCCGATCCCC
* * *
22282635 CTTTGCGTGCTGT-AGGTCCCGCTGCCACAACC
128 C-CTACGTGCTGTCA-ATCCCGCTGCCACAACC
* * * * *
22282667 CTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAACCCAACCCATGAAACGGG
1 CTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAG
* * *
22282732 CGTGCGGGTGCTCAGTCGGCCGAAGAGGCAAAATGCGTAAGCTGGGGA-CTGGCCCGATCCCCCC
66 CGTGCGGGTGCTCAGCCGGCCGAAGAGGCAAAATACGTAAGCTGGGGATC-GACCCGATCCCCCC
* *
22282796 TGCATGCTGTC
130 TACGTGCTGTC
22282807 GACCCCACTG
Statistics
Matches: 227, Mismatches: 62, Indels: 19
0.74 0.20 0.06
Matches are distributed among these distances:
157 3 0.01
158 104 0.46
159 116 0.51
160 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
CTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAG
CGTGCGGGTGCTCAGCCGGCCGAAGAGGCAAAATACGTAAGCTGGGGATCGACCCGATCCCCCCT
ACGTGCTGTCAATCCCGCTGCCACAACC
Found at i:22283619 original size:525 final size:514
Alignment explanation
Indices: 22282533--22283660 Score: 1345
Period size: 525 Copynumber: 2.2 Consensus size: 514
22282523 TCTTACTCTG
* * * * *
22282533 GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGC-ATTGAGCCGGTCAAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTT-AGCCGGTCGAA
* * * ** * * *
22282597 GAGGCATAATCCTTAAGTCGAGGATCGACCCGATCCCCCTTTGCGTGCTGTAGGTCCCGCTGCCA
65 GAGGTAGAATGCACAAGTCGGGGATCGACCCGATCCCCCTCTACGTGCTGTAGGTCCCGCTGCCA
* * *
22282662 CAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAACCCAACCCATGAA
130 CAACCCTCGGTCCAGCTGGGACTTAGACATGGAATGAACTCCCTACGCCTAACCCAACCCATAAA
* * ** * * *
22282727 ACGGGCGTGCGGGTGCTCAGTCGGCCGAAGAGGCAAAATGCGTAAGCTGGGGACTGGCCCGATCC
195 ACGGGCGTGCGAGCGCTCAACCGGCCGAAGAGGCAAAATGCGCAAGCAGGGGACTGGACCGATCC
** * *
22282792 CCCCTGCATGCTGTCGACCCCACTGTCGTAACCCTCGGTTCGGTCCGATCTTAGATTGGGAATGA
260 CCCCTGCATGCTACCGACCCCACTGTCGTAACCCTCGGTTCGGACCGATCTTAGACTGGGAATGA
* *
22282857 ACTCCACATGCTTAGACTGGGGATGAACTCCGTACGCCTAAGTCAACCCATGAAACGAGTGTACG
325 ACTCCACATGCTTAGACTGGGGATGAACTCCGTACGCCTAAGTCAACCCATGAAACGAGCGTACA
** * *
22282922 GGCGCTCAGCCAACCGGAGACGCATAATGCGTAAGCCGGGGATCAGCCCAGTCCCTCTCTGCATG
390 GGCGCTCAGCCAACCAAAGACGCATAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCATG
* ** * *
22282987 TTGTCGATCCCTCTGCCGGTCCTGCTACCACAACCCTCAGTCCGACTAGTGCTTAGACAT
455 CTACCGATCCCGCTGCCGGTCCTGCTACCACAACCCTCAGTCCGACTAGGGCTTAGACAT
* * * *
22283047 AGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTTAGCCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTTAGCCGGTCGAAG
* *
22283112 AGGTAGAATGCGCAAGTCGGGGATCGACCCGATCCCCC-CTACGTGCTGTCA-GTCCGGCTGCCA
66 AGGTAGAATGCACAAGTCGGGGATCGACCCGATCCCCCTCTACGTGCTGT-AGGTCCCGCTGCCA
* *
22283175 CAACCCTCGGTCCAGCTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC-TCAA
130 CAACCCTCGGTCCAGCTGGGACTTAGACATGGAATGAACTCCCTACGCCTAACCCAACCCAT-AA
* * * *
22283239 AACGGGCGTGCGAGCGCTCAACCGGCCGGAGAGGCAGAATGTGCAAGCAGGGGA-TCGGACCGGT
194 AACGGGCGTGCGAGCGCTCAACCGGCCGAAGAGGCAAAATGCGCAAGCAGGGGACT-GGACCGAT
* * *
22283303 CCCCCCTGCGTGCTACCGATCCTAC-GTCGTAACCCTCGG-TCTGGACCGATCTTAGACTGGGAA
258 CCCCCCTGCATGCTACCGACCCCACTGTCGTAACCCTCGGTTC-GGACCGATCTTAGACTGGGAA
* * * * * ** * *
22283366 TGAACTCCATATGGTTAGATTTGGGATGAGCTTTGTATGCCTAAGTCAACCCATTAAACGAGCGT
322 TGAACTCCACATGCTTAGACTGGGGATGAACTCCGTACGCCTAAGTCAACCCATGAAACGAGCGT
* * *
22283431 GCAGGCGCTCAGTCGGTCGAAGAGGCCTATTAAAGAGGGC-TAATTCGCAAGCCGGGGATCAGCC
387 ACAGGCGCTCAG-C---C--A-A--CC----AAAGA-CGCATAATGCGCAAGCCGGGGATCAGCC
** * * * * *
22283495 TGGTCCCCCTCTGCATGCTACCGATCTCGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTA
438 CAGTCCCCCTCTGCATGCTACCGATCCCGCTGCCGGTCCTGCTACCACAACCCTCAGTCCGACTA
22283560 GGGCTTAGACAT
503 GGGCTTAGACAT
* * * *
22283572 GGAATGAAATTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGTCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTTAGCCGGTCGAAG
22283637 AGGTAGAATGCACAAGTCGGGGAT
66 AGGTAGAATGCACAAGTCGGGGAT
22283661 TGGCCCGGTC
Statistics
Matches: 515, Mismatches: 80, Indels: 27
0.83 0.13 0.04
Matches are distributed among these distances:
511 2 0.00
512 100 0.19
513 149 0.29
514 86 0.17
515 2 0.00
516 1 0.00
518 1 0.00
519 1 0.00
521 2 0.00
525 169 0.33
526 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (514 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTTAGCCGGTCGAAG
AGGTAGAATGCACAAGTCGGGGATCGACCCGATCCCCCTCTACGTGCTGTAGGTCCCGCTGCCAC
AACCCTCGGTCCAGCTGGGACTTAGACATGGAATGAACTCCCTACGCCTAACCCAACCCATAAAA
CGGGCGTGCGAGCGCTCAACCGGCCGAAGAGGCAAAATGCGCAAGCAGGGGACTGGACCGATCCC
CCCTGCATGCTACCGACCCCACTGTCGTAACCCTCGGTTCGGACCGATCTTAGACTGGGAATGAA
CTCCACATGCTTAGACTGGGGATGAACTCCGTACGCCTAAGTCAACCCATGAAACGAGCGTACAG
GCGCTCAGCCAACCAAAGACGCATAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCATGC
TACCGATCCCGCTGCCGGTCCTGCTACCACAACCCTCAGTCCGACTAGGGCTTAGACAT
Found at i:22284694 original size:354 final size:345
Alignment explanation
Indices: 22283924--22285055 Score: 1106
Period size: 355 Copynumber: 3.2 Consensus size: 345
22283914 TACTCTAGGA
* * * * * ** *
22283924 ATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCTGGTCGAAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGG
* * * * *
22283989 CATAATGCGTAAG-TCGAGGATC-GACCCAGTCCC-CTTTTGCATGCTGT--A----GGTCCTGC
66 TATAATGCGCAAGCCCG-GGATCAG-CCCAATCCCAC-TCTGCATGCTGTCGATCGCGGTCCTG-
* * *
22284045 TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAACCCAACCC
127 TGCCACAACCCTC-GTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * *
22284110 ACAAAACGGGCATGCGGGTGCTCAACCGGCCGAAGAGGCAAAATGCGTAAGTCAGGGA-CTGGCC
191 ACGAAACGAGCGTGCGGGTGCTCAGCCGACCGAAGAGGCAAAATGCGTAAGTCGGGGATC-GGCC
* * * * * * * *** *
22284174 CGATCCCCCCTGCGTGCTGCTGACCCTACTGCCGCAACCCTCGGTCCAATCCGATCTTAGATTGG
255 CGGTCCCCCCTGCGTGCTACCGATCCTGCTACCGTAACCCTCGGT-CTGGCCGATCTTAGACTGG
* *
22284239 GAATGAACTCCATATGCTTAGACTAGGG
319 GAATGAACTCCGTATGCTTAGAAT-GGG
* * * * * * *
22284267 ATGAACTCCGTATGCCTAAGTCAACCGATGAAACGAGTGTGCGGGCACTCAGCCAATCGGAGACG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGG
* *
22284332 TATAATGCGCAAGCCCGGGATCAGCCCAATCCCCCTCTGCATGTTGTCGATCCCGCTGCCGGTCC
66 TATAATGCGCAAGCCCGGGATCAGCCCAATCCCACTCTGCATGCTGTCGAT----C-G-CGGTCC
* *
22284397 TGTTGCCACAACCCTCAGTCCGGCTAGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAA
125 TG-TGCCACAACCCTC-GTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
22284462 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGTAAAATGTGCATGCCGGGGATCGG
188 CCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGAAGAGGCAAAATGCGTAAGTCGGGGATCGG
* * *
22284527 CCCGGTCCCCCCAGCGTGTTACCGATCCTGCTACCGTAGCCCTCGGTCTGGCCGATCTTAGACTG
253 CCCGGTCCCCCCTGCGTGCTACCGATCCTGCTACCGTAACCCTCGGTCTGGCCGATCTTAGACTG
* *
22284592 AGAATGAACTCCGTATGCTTAGATTGGGG
318 GGAATGAACTCCGTATGCTTAGAAT-GGG
* * * *
22284621 ATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGCCGGCCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGG
** * * * *
22284686 TATAATGCGCAAGCTGGGGATCAGCCCGATCCCACTCTGCATGCTGTTGATCGC---AC--TACC
66 TATAATGCGCAAGCCCGGGATCAGCCCAATCCCACTCTGCATGCTGTCGATCGCGGTCCTGTGCC
* *
22284746 ACAACCCTCGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCCCGAA
131 ACAACCCTCGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * *
22284811 ACGAGCGTACGGGTGCTCAGCCGATCGAAGAGGCAAAATACGTAAGTCGAGGATCAGCCCGGTCC
196 ACGAGCGTGCGGGTGCTCAGCCGACCGAAGAGGCAAAATGCGTAAGTCGGGGATCGGCCCGGTCC
* * * *
22284876 CTTCCTGCGTGCTACCGATCCTACTACTGGTCCTACTACCGTAACCCTCAGCCTGGTTCGATCTT
261 C-CCCTGCGTGCTACCGA---T-C--CT-G-----CTACCGTAACCCTCGGTCTGG-CCGATCTT
* *
22284941 AGACTGGGAGTGAACTCCGTATGCTTAGACATGGA
312 AGACTGGGAATGAACTCCGTATGCTTAGA-ATGGG
* *
22284976 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGACCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGG
* * *
22285041 CAGAATGTGCAAGCC
66 TATAATGCGCAAGCC
22285056 AGTGATCGGC
Statistics
Matches: 649, Mismatches: 109, Indels: 50
0.80 0.13 0.06
Matches are distributed among these distances:
341 107 0.16
342 25 0.04
343 88 0.14
344 4 0.01
345 3 0.00
346 1 0.00
348 3 0.00
349 2 0.00
350 1 0.00
354 156 0.24
355 257 0.40
356 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (345 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGG
TATAATGCGCAAGCCCGGGATCAGCCCAATCCCACTCTGCATGCTGTCGATCGCGGTCCTGTGCC
ACAACCCTCGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
ACGAGCGTGCGGGTGCTCAGCCGACCGAAGAGGCAAAATGCGTAAGTCGGGGATCGGCCCGGTCC
CCCCTGCGTGCTACCGATCCTGCTACCGTAACCCTCGGTCTGGCCGATCTTAGACTGGGAATGAA
CTCCGTATGCTTAGAATGGG
Found at i:22284980 original size:26 final size:26
Alignment explanation
Indices: 22284938--22284990 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22284928 CTGGTTCGAT
*
22284938 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22284964 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22284990 C
1 C
22284991 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22285698 original size:26 final size:26
Alignment explanation
Indices: 22285659--22285709 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
22285649 GATTCGATCT
*
22285659 TAGACTGGGAATGAACTCCATATGCA
1 TAGACCGGGAATGAACTCCATATGCA
*
22285685 TAGACCGGGGATGAACTCCATATGC
1 TAGACCGGGAATGAACTCCATATGC
22285710 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (26 bp):
TAGACCGGGAATGAACTCCATATGCA
Found at i:22286087 original size:26 final size:26
Alignment explanation
Indices: 22286036--22286088 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22286026 CCGATCCGAT
*
22286036 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22286062 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
22286088 C
1 C
22286089 CAAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22286824 original size:26 final size:26
Alignment explanation
Indices: 22286795--22286845 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
22286785 CCGATCCGAT
22286795 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
22286821 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
22286846 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:22287090 original size:355 final size:362
Alignment explanation
Indices: 22286597--22287266 Score: 935
Period size: 355 Copynumber: 1.9 Consensus size: 362
22286587 CCCTCTGTAT
**
22286597 GCTGCAGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGCAGGTCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTAT
* * * * *
22286662 GCCTAAGCCAGCCCATGAAACGGGCGTGCAGGCACTCAGCTGGTCGGAGAGGCAGAATGCGCAAG
66 GCCTAAGCCAACCCATGAAACGAGCGTACAGGCACTCAACCGGTCGGAGAGGCAGAATGCGCAAG
22286727 CCAGGGATCGACCCGGTCCCCC-CTGCGTGCTGCCGAT-C-CTACT-G-CC-G-T-AACCCTCGA
131 CCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGATCCGCTACTGGTCCTGCTCAACCCTCG-
* *
22286784 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATACTTAGAC-TGGGGATGAACTCCGTATGC
195 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATACTTAGACAT-GGAATGAACTCCATATGC
* * * *
22286848 CTAAGTCAATCGATGAAACGAGCGTACAGGTGCTCAGCCAGCCGTAGAGGCATAATGCGTAACCC
259 CTAAGCCAACCCATGAAACGAGCGTACAGGTGCTCAGCCAGCCGAAGAGGCATAATGCGTAACCC
22286913 TGGGATTAGCCCGGTCCCCTTTCACGGGCTGTCGATCCC
324 TGGGATTAGCCCGGTCCCCTTTCACGGGCTGTCGATCCC
* * * *
22286952 GCTGCCGGTCCTGCTGCTACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTAT
1 GCTGCAGGTCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTAT
* * * * *
22287017 GCGTAAGCCAACCCATGAAACGAGTGTACGGGCGCTCAACCGGTCGGAGAGGTAGAATGCGCAAG
66 GCCTAAGCCAACCCATGAAACGAGCGTACAGGCACTCAACCGGTCGGAGAGGCAGAATGCGCAAG
*
22287082 CCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGGTCCTGCTGCCGCAACC
131 CCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGATCC-GCTACTGGTCCTGCT----CAACC
* ** *
22287147 CTCGTCCGATCTGATCTTAGACTGGGAATGAACTCTTTATGCTTAGACATGGAATGAACTCCATA
191 CTCGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTCCATA
** * *
22287212 TGCCTAAGCCAACCCATGAAACGAGCGTATGGGTGCTCAGTCGGCCGAAGAGGCA
256 TGCCTAAGCCAACCCATGAAACGAGCGTACAGGTGCTCAGCCAGCCGAAGAGGCA
22287267 GAATACGCAA
Statistics
Matches: 270, Mismatches: 31, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
355 136 0.50
356 15 0.06
357 1 0.00
359 4 0.01
360 1 0.00
361 2 0.01
362 1 0.00
363 1 0.00
367 100 0.37
368 9 0.03
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (362 bp):
GCTGCAGGTCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTAT
GCCTAAGCCAACCCATGAAACGAGCGTACAGGCACTCAACCGGTCGGAGAGGCAGAATGCGCAAG
CCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGATCCGCTACTGGTCCTGCTCAACCCTCGT
CCGATCCGATCTTAGACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTCCATATGCCT
AAGCCAACCCATGAAACGAGCGTACAGGTGCTCAGCCAGCCGAAGAGGCATAATGCGTAACCCTG
GGATTAGCCCGGTCCCCTTTCACGGGCTGTCGATCCC
Found at i:22287135 original size:171 final size:171
Alignment explanation
Indices: 22286833--22287150 Score: 379
Period size: 171 Copynumber: 1.9 Consensus size: 171
22286823 TAGACTGGGG
* * * * * *
22286833 ATGAACTCCGTATGCCTAAGTCAATCGATGAAACGAGCGTACAGGTGCTCAGCCAGCCGTAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCGCTCAACCAGCCGGAGAGG
* * * * * *
22286898 CATAATGCGTAACCCTGGGATTAGCCCGGTCCCCTTTCACGGGCTGTCGATCCCGCTGCCGGTCC
66 CAGAATGCGCAACCCAGGGATGAGCCCGGTCCCCTCTCACGGGCTGCCGATCCCGCTGCCGGTCC
*
22286963 TGCTGCTACAACCCTCGGTCCAGCTGGGGCTTAGACATGGA
131 TGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGA
* * * * *
22287004 ATGAACTCCGTATGCGTAAGCCAACCCATGAAACGAGTGTACGGGCGCTCAACCGGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCGCTCAACCAGCCGGAGAGG
* * * * * *
22287069 TAGAATGCGCAAGCCAGGGATCGA-CCCGGTCCCC-CTCTGCGTGCTGCCGATCCTGCTGCTGGT
66 CAGAATGCGCAACCCAGGGAT-GAGCCCGGTCCCCTCTC-ACGGGCTGCCGATCCCGCTGCCGGT
*
22287132 CCTGCTGCCGCAACCCTCG
129 CCTGCTGCCACAACCCTCG
22287151 TCCGATCTGA
Statistics
Matches: 120, Mismatches: 25, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
170 2 0.02
171 117 0.98
172 1 0.01
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.19
Consensus pattern (171 bp):
ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCGCTCAACCAGCCGGAGAGG
CAGAATGCGCAACCCAGGGATGAGCCCGGTCCCCTCTCACGGGCTGCCGATCCCGCTGCCGGTCC
TGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGA
Found at i:22287213 original size:26 final size:26
Alignment explanation
Indices: 22287162--22287214 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22287152 CCGATCTGAT
**
22287162 CTTAGACTGGGAATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCCATATG
22287188 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
22287214 C
1 C
22287215 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22287455 original size:158 final size:156
Alignment explanation
Indices: 22287188--22287689 Score: 488
Period size: 158 Copynumber: 3.2 Consensus size: 156
22287178 ACTCTTTATG
* *
22287188 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTATGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
* * * * * * *
22287252 TCGGCCGAAGAGGCAGAATACGCAAGCTGGGGACCGGCTCGATCCCCTCTGTGTACTATCGATCC
65 TCGACCGAAGAGGCAGAATGCGCAAGC-GGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATCC
*
22287317 TGCTGCCGTAACCCTCGGTCCAGTTCGAT
129 TGCTGCCGTAACCCTCGGTCC-GCTCGAT
* * * * * * *
22287346 CTAAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGT
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGT
* * ** * * * * *
22287411 CGATCGGAGAGGCTTAATGTGCAAGTCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGGTCC
66 CGACCGAAGAGGCAGAATGCGCAAG-CGGGGATCGGCCCGAT-CCCCTCTGCGTGCTGTCGATCC
** * * **
22287476 TGCTGCCACAACCCTCGGTCTGGCTGGGG
129 TGCTGCCGTAACCCTCGGTC-CGCTCGAT
* *
22287505 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACTG-GTGTGTGGGCGCTCA
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAAC-GAGCGTGTGGGCGCTCA
* * * * *
22287568 GCCGACCGAAAAGGCAGAATGGGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATT
64 GTCGACCGAAGAGGCAGAATGCGCAAG-CGGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATC
* * * *
22287633 TTGCTGTCGTAACCCTCGGTTCGGTCTGAT
128 CTGCTGCCGTAACCCTCGGTCCGCTC-GAT
* *
22287663 CTTAGACTGGAAATGAACTTCATATGC
1 CTTAGACTGGGAATGAACTCCATATGC
22287690 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 67, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 4 0.01
158 139 0.52
159 124 0.46
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGT
CGACCGAAGAGGCAGAATGCGCAAGCGGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATCCTG
CTGCCGTAACCCTCGGTCCGCTCGAT
Found at i:22287714 original size:26 final size:26
Alignment explanation
Indices: 22287663--22287715 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22287653 TCGGTCTGAT
*
22287663 CTTAGACTGGAAATGAACTTCATATG
1 CTTAGACTGGAAATGAACTCCATATG
** *
22287689 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
22287715 C
1 C
22287716 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:22288773 original size:26 final size:26
Alignment explanation
Indices: 22288737--22288789 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22288727 TTGGTTCAAT
*
22288737 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
* * *
22288763 CTTAGGCTGGGGATTAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
22288789 C
1 C
22288790 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:22288972 original size:26 final size:26
Alignment explanation
Indices: 22288921--22288973 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22288911 CTGGTCTGAT
*
22288921 CTTAGACTGGCAATGAACTCTATATG
1 CTTAGACTGGCAATGAACTCCATATG
*
22288947 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGCAATGAACTCCATATG
22288973 C
1 C
22288974 CCAAATCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:22288992 original size:184 final size:183
Alignment explanation
Indices: 22288579--22289131 Score: 591
Period size: 184 Copynumber: 3.0 Consensus size: 183
22288569 TCCAGCTGGG
* * * * *
22288579 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACAC-ACGAAATGGGCATACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAAC-CTACGAAACGAGCGTACGGGCGCTCA
* * * * *
22288643 GTCAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGG-T-CCCCCTGTGTGCT-ACTGA
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCGGATCCCCCCTGCGTGCTGTC-GA
* * * *
22288705 TCCTGCTGCCGCAACCCTTAGTTTGGT-TCAATCTTAGACTGGGAATGAACTCCGTAT
128 TCCTGCTGCCGCAACCCTCAGTCTGGTCT-GATCTTAGACT-GGAATGAACTCTGTAT
* * * * * *
22288762 GCTTAGGC-TGGGGATTAACTCCGCATGCCTAAGTCAA-CTCACGAAACGAGCGTGCAGGCGCTC
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCT-ACGAAACGAGCGTACGGGCGCTC
* * * *
22288825 AGCCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGACGGATCCCCCCTACATGCTGTCGAT
64 AGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCGGATCCCCCCTGCGTGCTGTCGAT
* * * * *
22288890 CCTACTGCTGTAACCCTCGGTCTGGTCTGATCTTAGACTGGCAATGAACTCTATAT
129 CCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGG-AATGAACTCTGTAT
* * *
22288946 GCTTAGACATGGAATGAACTCCGTATGCCCAAATCAACCTACGAAACGAGCGTACGGGCGCTCTG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTACGGGCGCTCAG
* * * * * * *
22289011 CCGATCGGAGAGGCAAAATGTGCAAGTCAGGGA-CAGGCCCGATCCCCCCTGCGTGCTGTCAATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCA-GCCGGATCCCCCCTGCGTGCTGTCGATC
* *
22289075 CTGTTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTTGGAATAAACTCTGTAT
130 CTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGAC-TGGAATGAACTCTGTAT
22289130 GC
1 GC
22289132 CTAAGTCAAC
Statistics
Matches: 302, Mismatches: 56, Indels: 23
0.79 0.15 0.06
Matches are distributed among these distances:
181 1 0.00
182 4 0.01
183 87 0.29
184 202 0.67
185 8 0.03
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTACGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCGGATCCCCCCTGCGTGCTGTCGATCC
TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGAATGAACTCTGTAT
Found at i:22289434 original size:26 final size:26
Alignment explanation
Indices: 22289381--22289435 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
22289371 CCCCCTTGCG
*
22289381 TGCTATGACTGGGAATGAACTCCGTA
1 TGCTATGACTGGGAATGAACTCCATA
* * *
22289407 TGCTTTGACTGGGGATGAACTGCATA
1 TGCTATGACTGGGAATGAACTCCATA
22289433 TGC
1 TGC
22289436 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (26 bp):
TGCTATGACTGGGAATGAACTCCATA
Done.