Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 217 of 402
Found at i:22290107 original size:26 final size:26
Alignment explanation
Indices: 22290056--22290108 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22290046 TCGGTCTGAT
*
22290056 CTTAGACTGGAAATGAACTTCATATG
1 CTTAGACTGGAAATGAACTCCATATG
** *
22290082 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
22290108 C
1 C
22290109 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:22291166 original size:26 final size:26
Alignment explanation
Indices: 22291130--22291182 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22291120 TTGGTTCAAT
*
22291130 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
* * *
22291156 CTTAGGCTGGGGATTAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
22291182 C
1 C
22291183 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:22291365 original size:26 final size:26
Alignment explanation
Indices: 22291314--22291366 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22291304 CTGGTCTGAT
*
22291314 CTTAGACTGGCAATGAACTCTATATG
1 CTTAGACTGGCAATGAACTCCATATG
*
22291340 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGCAATGAACTCCATATG
22291366 C
1 C
22291367 CCAAATCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:22291384 original size:184 final size:184
Alignment explanation
Indices: 22290972--22291524 Score: 623
Period size: 184 Copynumber: 3.0 Consensus size: 184
22290962 TCCAGCTGGG
* * * * *
22290972 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACGAAATGGGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTACGGGCGCTCAG
* * * * *
22291037 TCAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGG-T-CCCCCTGTGTGCT-ACTGAT
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCGGATCCCCCCTGCGTGCTGTC-GAT
* * * *
22291099 CCTGCTGCCGCAACCCTTAGTTTGGT-TCAATCTTAGACTGGGAATGAACTCCGTAT
129 CCTGCTGCCGCAACCCTCAGTCTGGTCT-GATCTTAGACTGGGAATGAACTCTGTAT
* * * * * * *
22291155 GCTTAGGC-TGGGGATTAACTCCGCATGCCTAAGTCAACTCACGAAACGAGCGTGCAGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTACGGGCGCTCA
* * * *
22291219 GCCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGACGGATCCCCCCTACATGCTGTCGATC
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCGGATCCCCCCTGCGTGCTGTCGATC
* * * * * *
22291284 CTACTGCTGTAACCCTCGGTCTGGTCTGATCTTAGACTGGCAATGAACTCTATAT
130 CTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
* * * *
22291339 GCTTAGACATGGAATGAACTCCGTATGCCCAAATCAACCCACGAAACGAGCGTACGGGCGCTCTG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTACGGGCGCTCAG
* * * * * *
22291404 CCGATCGGAGAGGCAAAATGCGCAAGTCAGGGA-CAGGCCCGATCCCCCCTGCGTGCTGTCAATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCA-GCCGGATCCCCCCTGCGTGCTGTCGATC
* * *
22291468 CTGTTGCCGCAACCCTCAATCTGGTCTGATCTTAGACTGGGAATAAACTCTGTAT
130 CTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
22291523 GC
1 GC
22291525 CTAAGTCAAC
Statistics
Matches: 303, Mismatches: 60, Indels: 13
0.81 0.16 0.03
Matches are distributed among these distances:
182 4 0.01
183 87 0.29
184 209 0.69
185 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTACGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCGGATCCCCCCTGCGTGCTGTCGATCC
TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
Found at i:22291811 original size:26 final size:26
Alignment explanation
Indices: 22291775--22291829 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
22291765 CCCCCTTGCG
*
22291775 TGCTTTGACTGGGAATGAACTCCGTA
1 TGCTTTGACTGGGAATGAACTCCATA
*
22291801 TGCTTTGACTGGGGATGAACTCCATA
1 TGCTTTGACTGGGAATGAACTCCATA
22291827 TGC
1 TGC
22291830 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (26 bp):
TGCTTTGACTGGGAATGAACTCCATA
Found at i:22292165 original size:170 final size:171
Alignment explanation
Indices: 22291815--22292233 Score: 462
Period size: 170 Copynumber: 2.5 Consensus size: 171
22291805 TTGACTGGGG
* * * * * ** * *
22291815 ATGAACTCCATATGCCTAAGTCAACCCATGAAGCGAGCATGCGGGTGCTCAGCCGGCCGAAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAACCGGCCGGAGAGG
* * *
22291880 CATAATGCGTAAGTCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCTCGCTGTCGATCC
66 CATAATGCGCAAGTCAGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCTCGCTGTCGATCC
* *
22291945 TGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGAA
131 TGCTACCACAACCCACGGTCCGACTGGAGCTTAGACATGAA
* *
22291986 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCGGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAACCGGCCGGAGAGG
* *
22292051 CAGAATGCGCAAGTCAGGGATC-GACCCGATCCCCC-CTACGTGCTGTCGATC-CTGCTG-CTGG
66 CATAATGCGCAAGTCAGGGATCAG-CCCGATCCCCCTCTACGTGCTGTCGATCTC-GCTGTC-GA
* * * * *
22292112 TCCTGCTATCGA-AACCCACGGTCTGGTCT-GATCTTAGAC-TCGGA
128 TCCTGCTA-CCACAACCCACGGTC-CGACTGGAGCTTAGACAT-GAA
* *
22292156 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGA--GTGCACGAGCACT-AAGTCGGCCGGAG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCA-G-GCACTCAA-CCGGCCGGAG
22292218 AGGCATAATGCGCAAG
63 AGGCATAATGCGCAAG
22292234 CCCGATCCCC
Statistics
Matches: 211, Mismatches: 28, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
168 5 0.02
169 6 0.03
170 111 0.53
171 89 0.42
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (171 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAACCGGCCGGAGAGG
CATAATGCGCAAGTCAGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCTCGCTGTCGATCC
TGCTACCACAACCCACGGTCCGACTGGAGCTTAGACATGAA
Found at i:22292478 original size:26 final size:26
Alignment explanation
Indices: 22292449--22292501 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22292439 CCGGTTCCAT
22292449 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
22292475 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22292501 C
1 C
22292502 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22293727 original size:26 final size:26
Alignment explanation
Indices: 22293690--22293746 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
22293680 TGCTGCCGAT
*
22293690 CTTAGACTTGGAATGAACCCCGTATG
1 CTTAGACATGGAATGAACCCCGTATG
*
22293716 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACCCCGTATG
22293742 CTTAG
1 CTTAG
22293747 GCCATCCCAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACCCCGTATG
Found at i:22293916 original size:158 final size:159
Alignment explanation
Indices: 22293716--22294217 Score: 526
Period size: 158 Copynumber: 3.2 Consensus size: 159
22293706 ACCCCGTATG
* * * * * * *
22293716 CTTAGACATGGAATGAACTCCGTATGCTTAGGCCATCCCACGAAACGAGTGTACGGGCCCTCAAC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * *
22293781 CGGTCGGAGAGGCAGAATGCGCAAG-TCGGGGACCGGCTCGGTCCCCCCTGCGTGATATCGATCC
66 CGGTCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCC
* *
22293845 TGCTGCTGCAACCCTCGGTCTGATCT-GAT
130 TGCTGCCGCAACCCTCGGTCCGATCTCGAT
* * ** * *
22293874 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTTGGGTGCTGAGC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * *
22293939 TGGTCGGAGAAGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTGCATGCTATCGATCC
66 CGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCC-CTGCGTGCTATCGATCC
* * * * **
22294004 CGCTGCCACAACCCTCGATCCGA-CTGGGG
130 TGCTGCCGCAACCCTCGGTCCGATCTCGAT
* * * * * * *
22294033 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGACGATCAGT
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
** * * * * * *
22294098 CGACCGAAGAGGCAGAATGCGCAAGCTGAGAATTGGCCCGGTCCCCCCTACGTGCTGTCGATCCT
66 CGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCT
* * *
22294163 GCTACCGTAACCCTCGGTCCGGT-TCGAT
131 GCTGCCGCAACCCTCGGTCCGATCTCGAT
*
22294191 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACAGGGAATGAACTCCGTATGC
22294218 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 65, Indels: 8
0.79 0.19 0.02
Matches are distributed among these distances:
158 150 0.55
159 125 0.45
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCT
GCTGCCGCAACCCTCGGTCCGATCTCGAT
Found at i:22294220 original size:26 final size:26
Alignment explanation
Indices: 22294191--22294243 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22294181 CCGGTTCGAT
22294191 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
22294217 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22294243 C
1 C
22294244 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22294630 original size:25 final size:26
Alignment explanation
Indices: 22294590--22294641 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
22294580 CCCGTTCGAT
22294590 CTTAGACTAGGAATGAACTC-GTATG
1 CTTAGACTAGGAATGAACTCTGTATG
* *
22294615 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
22294641 C
1 C
22294642 CTCAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:22295491 original size:26 final size:26
Alignment explanation
Indices: 22295455--22295513 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
22295445 CTCAGTTCGG
22295455 TTCG-ATG-TTAGACTAGGAATGAAC
1 TTCGTATGCTTAGACTAGGAATGAAC
* *
22295479 TTCGTATGCTTAGACTGGGGATGAAC
1 TTCGTATGCTTAGACTAGGAATGAAC
*
22295505 TCCGTATGC
1 TTCGTATGC
22295514 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 23 0.77
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
TTCGTATGCTTAGACTAGGAATGAAC
Found at i:22295696 original size:26 final size:26
Alignment explanation
Indices: 22295658--22295710 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22295648 CCCAACCAAT
22295658 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22295684 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22295710 C
1 C
22295711 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22296099 original size:159 final size:158
Alignment explanation
Indices: 22295683--22296186 Score: 485
Period size: 159 Copynumber: 3.2 Consensus size: 158
22295673 AACTCCGTAT
*
22295683 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
** * * * **
22295748 CCGACCGGAGAGGCAGAATGCGCAAGTTAGGGACCGACCTGGTCCCCCCCTGCATGCTGTCAATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGT-CCCCCCTGCATGCTACCAATC
** *
22295813 CTGCTACCGTAACCCTCAGTTCGGTCTGA
130 CTGCTACCACAACCCTCAATTCGGTCTGA
* * * * * *
22295842 TCTTAGAC-TAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCATTCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCA
* * * **
22295906 GCCGACCAGAGAGGCATAATGCACAAGCCAGGGATCGGCCCGGTCCCCCTCTGCATGCTACCGGT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCC-CTGCATGCTACCAAT
* *
22295971 -CTCGCTACCACAACCCTCAATTCTGT-TGGG
129 CCT-GCTACCACAACCCTCAATTCGGTCT-GA
** * * * *
22296001 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
* * * ** * * * **
22296066 CCGATCGGAGAGGCAGAATACGCAAGCCGGGGATTTGTCCGGTCCCCCCTGTATGCTGCTGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCATGCTACCAATCC
* * * * * * *
22296131 TACTGCCATAACCTTCGATCCGGTCCGA
131 TGCTACCACAACCCTCAATTCGGTCTGA
* *
22296159 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCTGTATGC
22296187 TTGGACTGGG
Statistics
Matches: 278, Mismatches: 59, Indels: 17
0.79 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 61 0.22
159 215 0.77
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCATGCTACCAATCC
TGCTACCACAACCCTCAATTCGGTCTGA
Found at i:22296565 original size:26 final size:26
Alignment explanation
Indices: 22296529--22296581 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22296519 CCAGTTCGAT
22296529 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22296555 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22296581 C
1 C
22296582 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22296769 original size:26 final size:26
Alignment explanation
Indices: 22296731--22296783 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22296721 GGCTCAAACT
22296731 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22296757 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22296783 C
1 C
22296784 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22297821 original size:26 final size:26
Alignment explanation
Indices: 22297785--22297835 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
22297775 CCGGTCTGAT
22297785 CTTAAACTGGGAATAAACTCCATATG
1 CTTAAACTGGGAATAAACTCCATATG
* * *
22297811 CTTAGACTGGGGATGAACTCCATAT
1 CTTAAACTGGGAATAAACTCCATAT
22297836 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCCATATG
Found at i:22298511 original size:161 final size:159
Alignment explanation
Indices: 22298175--22298624 Score: 480
Period size: 161 Copynumber: 2.8 Consensus size: 159
22298165 AACTCTGTAT
* * * *
22298175 GCTTAGACATGGAATGAATTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * * * * *
22298240 CCAACCGGAGAGGCAGAATGTGCATGCCAGGGATCGACCCGGTCCCCCCTGTGTGCTATCGAT-C
66 CCGACCGGAGAGGCAAAATCCGCAAGCCGGGGATCGACCCGATCCCCTCTGCGTGCTGTCGATCC
* **
22298304 TTGCTGCCACAACCCTTGGTCCAGCCTGA
131 TCGCTGCCACAACCCTCAGTCCAGCCTGA
* * * * * *
22298333 TCTTAGA-TTGGGAATGAACTCCATGTGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC-TC
* * * *
22298397 AGCCGCCCAGAGAGGCATAATCCGCAAGTCGGGGATCGACCCGATCCCTCTCTGCGTGCTGTCGA
64 AGCCGACCGGAGAGGCAAAATCCGCAAGCCGGGGATCGACCCGATCCC-CTCTGCGTGCTGTCGA
* *
22298462 TCCTCGTTGCCACAACCCTCAGTCCAGCTTCG-
128 TCCTCGCTGCCACAACCCTCAGTCCAGCCT-GA
* *
22298494 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
22298559 CCGATCGGAGAGGCAAAATGCC-CAAGCCGAGGATC-AGGCCGATCCCC-CTTACGTGCTGTCGA
66 CCGACCGGAGAGGCAAAAT-CCGCAAGCCGGGGATCGA-CCCGATCCCCTC-TGCGTGCTGTCGA
22298621 TCCT
128 TCCT
22298625 ACCGCTGCAA
Statistics
Matches: 239, Mismatches: 44, Indels: 17
0.80 0.15 0.06
Matches are distributed among these distances:
157 1 0.00
158 51 0.21
159 57 0.24
160 51 0.21
161 77 0.32
162 2 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAAAATCCGCAAGCCGGGGATCGACCCGATCCCCTCTGCGTGCTGTCGATCC
TCGCTGCCACAACCCTCAGTCCAGCCTGA
Found at i:22298679 original size:158 final size:156
Alignment explanation
Indices: 22298176--22298679 Score: 430
Period size: 158 Copynumber: 3.2 Consensus size: 156
22298166 ACTCTGTATG
* * *
22298176 CTTAGACATGGAATGAATTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * * * * *
22298241 CAACCGGAGAGGCAGAATGTGCATGCC-AGGGATCGACCCGGTCCCCCCTGTGTGCTATCGATCT
66 CGACCGGAGAGGCAAAATGCCCAAGCCGA-GGATCGACCCGATCCCCCTTGCGTGCTGTCGATCC
* ** * * *
22298305 TGCTGCCACAACCCTTGGTCCA-GCCTGAT
130 T-CCGCTGCAACCCTCGGT-CAGGTC-GAC
* * * * * *
22298334 CTTAGA-TTGGGAATGAACTCCATGTGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC-TCA
* * * * * *
22298398 GCCGCCCAGAGAGGCATAAT-CCGCAAGTCGGGGATCGACCCGATCCCTCTCTGCGTGCTGTCGA
64 GCCGACCGGAGAGGCAAAATGCC-CAAGCCGAGGATCGACCCGATCCCCCT-TGCGTGCTGTCGA
* * * *
22298462 TCCT-CGTTGCCACAACCCTCAGTCCAGCTTCG-G
127 TCCTCCGCTG---CAACCCTCGGT-CAG-GTCGAC
* *
22298495 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
22298560 CGATCGGAGAGGCAAAATGCCCAAGCCGAGGATC-AGGCCGATCCCCCTTACGTGCTGTCGATCC
66 CGACCGGAGAGGCAAAATGCCCAAGCCGAGGATCGA-CCCGATCCCCCTTGCGTGCTGTCGATCC
*
22298624 TACCGCTGCAACCCTCGGTCTGGTCAGAC
130 T-CCGCTGCAACCCTCGGTCAGGTC-GAC
22298653 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
22298680 TTAGACTGTG
Statistics
Matches: 273, Mismatches: 55, Indels: 36
0.75 0.15 0.10
Matches are distributed among these distances:
156 2 0.01
157 5 0.02
158 85 0.31
159 55 0.20
160 53 0.19
161 70 0.26
162 2 0.01
163 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAAAATGCCCAAGCCGAGGATCGACCCGATCCCCCTTGCGTGCTGTCGATCCT
CCGCTGCAACCCTCGGTCAGGTCGAC
Found at i:22298694 original size:26 final size:26
Alignment explanation
Indices: 22298653--22298705 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22298643 CTGGTCAGAC
22298653 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22298679 CTTAGACTGTGG-ATGAACTTCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
22298705 C
1 C
22298706 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22299418 original size:26 final size:26
Alignment explanation
Indices: 22299379--22299432 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
22299369 TGGGTCAAAC
22299379 GCTTAGACTGGGAATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
22299405 GCTTAGACAT-GGAATGAACTCCGTAT
1 GCTTAGAC-TGGGAATGAACTCCGTAT
22299431 GC
1 GC
22299433 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCGTAT
Found at i:22299764 original size:26 final size:26
Alignment explanation
Indices: 22299723--22299775 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22299713 TCAGTTCGAT
22299723 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
22299749 CTTAGACTTGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
22299775 C
1 C
22299776 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:22299961 original size:26 final size:26
Alignment explanation
Indices: 22299932--22299984 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22299922 CTGATCCGAT
22299932 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
22299958 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
22299984 C
1 C
22299985 CGAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22300351 original size:159 final size:157
Alignment explanation
Indices: 22299957--22300395 Score: 432
Period size: 159 Copynumber: 2.8 Consensus size: 157
22299947 AACTCCGTAT
* * * * *
22299957 GCTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCACGAAACGAGCGTGTGGGCGCTAAT
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTAGT
** * * * * * *
22300022 CCGGTTGGAGAGGCAGAATGCGTAAGCCGAGGACCGGCCCGATCCCCCCTGTGTGTTGTCGATCC
66 -CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCGGTCCCCCCTGCGTGCTGCCGATCC
* * *
22300087 TGCTACCGCAACCCTCGGTCTGGTCCGA
130 CGCTACCACAACCCTCGGTCCGGTCCGA
* ** * * * * * * * *
22300115 TCTTAGAC-TGGGAATGAACTCTTTACGCATATGTCAACCCACGGAACGAGCGTTCAGGCTCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACT-A
* * * * * *
22300179 GCCGGCCGTAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGGT
64 GTCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCGGTCCCCC-CTGCGTGCTGCCGAT
* * * *
22300244 CCCGCTGCCACAACCCTGGGTCCGG-CTGGG
128 CCCGCTACCACAACCCTCGGTCCGGTC-CGA
* *
22300274 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACT-AG
* * *
22300339 TCGACCGGAGAGGCAGAATGTGCAAGCCGGGGACCGACCCGGTCCCCCCTGCGTGCT
65 TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCGGTCCCCCCTGCGTGCT
22300396 ATCGATCTTG
Statistics
Matches: 219, Mismatches: 57, Indels: 10
0.77 0.20 0.03
Matches are distributed among these distances:
157 1 0.00
158 95 0.43
159 122 0.56
160 1 0.00
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTAGT
CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCC
GCTACCACAACCCTCGGTCCGGTCCGA
Found at i:22300459 original size:158 final size:156
Alignment explanation
Indices: 22299958--22300459 Score: 468
Period size: 158 Copynumber: 3.2 Consensus size: 156
22299948 ACTCCGTATG
* * * *
22299958 CTTAGACAT-GGAATGAACTCCGTATGCCGAAGCCAACCCACGAAACGAGCGTGTGGGCGCTAAT
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTAGT
** * * * * *
22300022 CCGGTTGGAGAGGCAGAATGCGTAAGCCGAGGACCGGCCCGATCCCCCCTGTGTGTTGTCGATCC
65 -CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* *
22300087 TGCTACCGCAACCCTCGGTCTGGTCCGAT
129 TGCTGCCGCAACCCTCGGTC-CGTCCGAT
** * * * * * * * * *
22300116 CTTAGACTGGGAATGAACTCTTTACGCATATGTCAACCCACGGAACGAGCGTTCAGGCTCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACT-AGT
* * * * * *
22300181 CGGCCGTAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGGTCC
65 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCC
* * * * * **
22300246 CGCTGCCACAACCCTGGGTCCGGCTGGGG
129 TGCTGCCGCAACCCTCGGTCCGTC-CGAT
* * *
22300275 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACT-AG
* * * * *
22300339 TCGACCGGAGAGGCAGAATGTGCAAGCCGGGGACCGACCCGGTCCCCCCTGCGTGCTATCGATCT
64 TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* *
22300404 TGCTGCCGTAACCCTCGGTCCAGTCCGCT
129 TGCTGCCGCAACCCTCGGTCC-GTCCGAT
* *
22300433 CTTATACTGGGAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
22300460 TTAAACTGGG
Statistics
Matches: 265, Mismatches: 72, Indels: 14
0.75 0.21 0.04
Matches are distributed among these distances:
157 2 0.01
158 140 0.53
159 122 0.46
160 1 0.00
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTAGTC
GGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCGCAACCCTCGGTCCGTCCGAT
Found at i:22300469 original size:26 final size:26
Alignment explanation
Indices: 22300433--22300485 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22300423 CCAGTCCGCT
* *
22300433 CTTATACTGGGAATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
22300459 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
22300485 C
1 C
22300486 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:22301192 original size:26 final size:26
Alignment explanation
Indices: 22301154--22301206 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22301144 GGCTCAAACT
22301154 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22301180 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22301206 C
1 C
22301207 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22301391 original size:26 final size:26
Alignment explanation
Indices: 22301362--22301414 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22301352 CCGATCTAAT
22301362 CTTAGAC-TGCGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
22301388 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
22301414 C
1 C
22301415 CGAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22301464 original size:29 final size:29
Alignment explanation
Indices: 22301422--22301482 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
22301412 TGCCGAAGCC
22301422 AACCTGCACAACACAAACACGCAGAATCA
1 AACCTGCACAACACAAACACGCAGAATCA
22301451 AACCTGCACAACACAAACACGCAGAATCA
1 AACCTGCACAACACAAACACGCAGAATCA
22301480 AAC
1 AAC
22301483 TTGCTCTGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.49, C:0.34, G:0.10, T:0.07
Consensus pattern (29 bp):
AACCTGCACAACACAAACACGCAGAATCA
Found at i:22302375 original size:26 final size:26
Alignment explanation
Indices: 22302346--22302398 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22302336 CTGGTTCGAT
22302346 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
22302372 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
22302398 C
1 C
22302399 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:22302578 original size:26 final size:26
Alignment explanation
Indices: 22302540--22302592 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22302530 CTGGTTCTAT
22302540 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22302566 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22302592 C
1 C
22302593 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22302777 original size:197 final size:196
Alignment explanation
Indices: 22302323--22303745 Score: 1798
Period size: 197 Copynumber: 7.3 Consensus size: 196
22302313 ATCCTACTAT
** * * *
22302323 CGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC-TGGGGATG
1 CGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATG
* * * * * * * *
22302387 AACTCTGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTCAACAGGCCAGAGAGGCAG
65 AACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAG
*
22302452 AATGCGTAAG-CGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCCTGTTGCTGGTCCTGC-
130 AATGCGTAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTGTTGCTGGTCCTGCT
22302515 GC
195 GC
* ** * *
22302517 CGTAACCCTCGGTCTGGTTCTATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
1 CGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
** * **
22302582 ACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAATCGGCCGGAGAGGCAGA
66 ACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGA
* * * * *
22302647 ATGCGTAAGCCGGGGACCGACTCGGTCCTCTCCTGCGTGCTATCGATCCTGTTGTTGGTCCTGCT
131 ATGCGTAAGCCGGGGATCGACCCGATCC-CCCCTGCGTGCTATCGATCCTGTTGCTGGTCCTGCT
22302712 GC
195 GC
* * *
22302714 CGTAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGA
1 CGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
* * * * * * **
22302779 ACTCCATATGCCTAAGCCAACCGATGAAACAAGCGAGTGAGCGCTCAGCCGATCGGAGAGGCA-A
66 ACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGA
* ** *
22302843 ATGCGTAAGCCGGGGATCGACCCGATCCCCCCTGCTTGCTATCGATCCTACTGCTGGTCCTACTG
131 ATGCGTAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTGTTGCTGGTCCTGCTG
22302908 C
196 C
** * *
22302909 TACAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
1 CGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
* * * * * ** *
22302974 ACTCCGTATGCCTAAACCAACCCATGAAATGAGCGTGTGGGTGCTCAGTCAACTGGAGAGGCAGA
66 ACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGA
* * * * * *
22303039 ATGTGCATGCCGGGGA-CTGGCCCGGTCCTCCCCTGCGTGCTATCGATCCTGTTGCTGGTCTTGC
131 ATGCGTAAGCCGGGGATC-GACCCGATCC-CCCCTGCGTGCTATCGATCCTGTTGCTGGTCCTGC
22303103 TGC
194 TGC
* * *
22303106 CGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATAGAATGA
1 CGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
* * *
22303171 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGA
66 ACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGA
* * * * * ** * *
22303236 ACGCGTAAGTCGAGGATCGACCCGATCCCCCCTTGCTTGCTGTCGATCCTACTGTTGGTCCTACT
131 ATGCGTAAGCCGGGGATCGACCCGATCCCCCC-TGCGTGCTATCGATCCTGTTGCTGGTCCTGCT
22303301 GC
195 GC
** * *
22303303 TACAACCCTCGGT-CTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATG
1 CGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATG
* * * * *
22303367 AACTCCGTATGCCTAAACCAACCCATGAAATGAGCGTGCGGGCGCTCAGTCGACTGGAGAGGCAG
65 AACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAG
* * * * *
22303432 AATGCGCATGCCGGGGACCGGCCCGATCCTCCCCTACGTGCTATCGATCCTGTTGCTGGTCCTGC
130 AATGCGTAAGCCGGGGATCGACCCGATCC-CCCCTGCGTGCTATCGATCCTGTTGCTGGTCCTGC
22303497 TGC
194 TGC
*
22303500 CGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
1 CGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
* *
22303565 ACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGA
66 ACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGA
* * * * **
22303630 ACGCGTAAGTC-GGGATCGACCCGATCCCCCCCTGCTTGCTACCGATCCTACTGCTGGTCCTGCT
131 ATGCGTAAGCCGGGGATCGACCCGAT-CCCCCCTGCGTGCTATCGATCCTGTTGCTGGTCCTGCT
22303694 GC
195 GC
** *
22303696 TACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 CGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
22303746 CTAAGCCAAC
Statistics
Matches: 1053, Mismatches: 163, Indels: 24
0.85 0.13 0.02
Matches are distributed among these distances:
194 124 0.12
195 159 0.15
196 178 0.17
197 585 0.56
198 7 0.01
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (196 bp):
CGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
ACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGA
ATGCGTAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTGTTGCTGGTCCTGCTG
C
Found at i:22302788 original size:26 final size:26
Alignment explanation
Indices: 22302737--22302789 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22302727 CCAGTCCGAT
* *
22302737 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
22302763 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
22302789 C
1 C
22302790 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22302961 original size:26 final size:26
Alignment explanation
Indices: 22302932--22302984 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22302922 CCGGTCCGAT
22302932 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
22302958 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
22302984 C
1 C
22302985 CTAAACCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22303355 original size:26 final size:26
Alignment explanation
Indices: 22303326--22303378 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22303316 CTGATCCGAT
*
22303326 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
22303352 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
22303378 C
1 C
22303379 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22303443 original size:394 final size:393
Alignment explanation
Indices: 22302323--22303745 Score: 2145
Period size: 394 Copynumber: 3.6 Consensus size: 393
22302313 ATCCTACTAT
* ** * * *
22302323 CGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC-TGGGGATG
1 CGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATG
* * * * * * * * *
22302387 AACTCTGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTCAACAGGCCAGAGAGGCAG
65 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAG
* * * ** *
22302452 AATGCGTAAG-CGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCCTGTTGCTGGTCCTGC-
130 AACGCGTAAGTCGGGGATCGACCCGATCCCCCCTGCTTGCTATCGATCCTACTGCTGGTCCTACT
*** * * *
22302515 GCCGTAACCCTCGGTCTGGTTCTATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAAT
195 GCTACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAAT
* ** * * * *
22302580 GAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAATCGGCCGGAGAGGCA
260 GAACTCCGTATGCCTAAACCAACCCATGAAATGAGCGTGCGGGTGCTCAGTCGACTGGAGAGGCA
* * * * * *
22302645 GAATGCGTAAGCCGGGGACCGACTCGGTCCTCTCCTGCGTGCTATCGATCCTGTTGTTGGTCCTG
325 GAATGCGCATGCCGGGGACCGGCCCGGTCCTCCCCTGCGTGCTATCGATCCTGTTGCTGGTCCTG
22302710 CTGC
390 CTGC
* *
22302714 CGTAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGA
1 CGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
* * * * * * *
22302779 ACTCCATATGCCTAAGCCAACCGATGAAACAAGCGAGTGAGCGCTCAGCCGATCGGAGAGGCA-A
66 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGA
* *
22302843 ATGCGTAAGCCGGGGATCGACCCGATCCCCCCTGCTTGCTATCGATCCTACTGCTGGTCCTACTG
131 ACGCGTAAGTCGGGGATCGACCCGATCCCCCCTGCTTGCTATCGATCCTACTGCTGGTCCTACTG
*
22302908 CTACAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATG
196 CTACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATG
* *
22302973 AACTCCGTATGCCTAAACCAACCCATGAAATGAGCGTGTGGGTGCTCAGTCAACTGGAGAGGCAG
261 AACTCCGTATGCCTAAACCAACCCATGAAATGAGCGTGCGGGTGCTCAGTCGACTGGAGAGGCAG
* * *
22303038 AATGTGCATGCCGGGGACTGGCCCGGTCCTCCCCTGCGTGCTATCGATCCTGTTGCTGGTCTTGC
326 AATGCGCATGCCGGGGACCGGCCCGGTCCTCCCCTGCGTGCTATCGATCCTGTTGCTGGTCCTGC
22303103 TGC
391 TGC
* *
22303106 CGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATAGAATGA
1 CGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
22303171 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGA
66 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGA
* * *
22303236 ACGCGTAAGTCGAGGATCGACCCGATCCCCCCTTGCTTGCTGTCGATCCTACTGTTGGTCCTACT
131 ACGCGTAAGTCGGGGATCGACCCGATCCCCCC-TGCTTGCTATCGATCCTACTGCTGGTCCTACT
* * *
22303301 GCTACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAAT
195 GCTACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAAT
*
22303366 GAACTCCGTATGCCTAAACCAACCCATGAAATGAGCGTGCGGGCGCTCAGTCGACTGGAGAGGCA
260 GAACTCCGTATGCCTAAACCAACCCATGAAATGAGCGTGCGGGTGCTCAGTCGACTGGAGAGGCA
* *
22303431 GAATGCGCATGCCGGGGACCGGCCCGATCCTCCCCTACGTGCTATCGATCCTGTTGCTGGTCCTG
325 GAATGCGCATGCCGGGGACCGGCCCGGTCCTCCCCTGCGTGCTATCGATCCTGTTGCTGGTCCTG
22303496 CTGC
390 CTGC
22303500 CGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
1 CGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
*
22303565 ACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGA
66 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGA
* *
22303630 ACGCGTAAGTC-GGGATCGACCCGATCCCCCCCTGCTTGCTACCGATCCTACTGCTGGTCCTGCT
131 ACGCGTAAGTCGGGGATCGACCCGAT-CCCCCCTGCTTGCTATCGATCCTACTGCTGGTCCTACT
22303694 GCTACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
195 GCTACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
22303746 CTAAGCCAAC
Statistics
Matches: 935, Mismatches: 91, Indels: 10
0.90 0.09 0.01
Matches are distributed among these distances:
390 10 0.01
391 152 0.16
392 292 0.31
393 120 0.13
394 361 0.39
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (393 bp):
CGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGA
ACGCGTAAGTCGGGGATCGACCCGATCCCCCCTGCTTGCTATCGATCCTACTGCTGGTCCTACTG
CTACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATG
AACTCCGTATGCCTAAACCAACCCATGAAATGAGCGTGCGGGTGCTCAGTCGACTGGAGAGGCAG
AATGCGCATGCCGGGGACCGGCCCGGTCCTCCCCTGCGTGCTATCGATCCTGTTGCTGGTCCTGC
TGC
Found at i:22303552 original size:26 final size:26
Alignment explanation
Indices: 22303523--22303575 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22303513 CCAGTCCGAT
22303523 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
22303549 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
22303575 C
1 C
22303576 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22304794 original size:26 final size:26
Alignment explanation
Indices: 22304756--22304808 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22304746 GGCTCAAACT
*
22304756 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22304782 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22304808 C
1 C
22304809 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22305237 original size:157 final size:158
Alignment explanation
Indices: 22304781--22305282 Score: 546
Period size: 157 Copynumber: 3.2 Consensus size: 158
22304771 AACTCTGTAT
* * *
22304781 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCAGGCGCTCAG
1 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
* * * *
22304846 CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCAGTCTGCCCCTGCGTGCTATCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTC-CCCCCTGCGTGCTATCGATC
* * *
22304911 CTGCTACCGCAACCCTCAGTCTGGTCTGA
130 CTGCTGCCACAACCCTCAGTCCGGTCTGA
* * ** * * * *
22304940 TCTTAGAC-TGAGAATGAAGTCCGTATGCAAAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-AGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCA
* * ** * ** ** *
22305004 GCCGGCCGAAGAGGCATAATGCGCAAGCTAGGGATCGACCCGGTCCCCTTTGCGTGCTGCCGGT-
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATC
* *
22305068 CTCGCTGCCACAACCCTCGGTCCGG-CTGGG
130 CT-GCTGCCACAACCCTCAGTCCGGTCT-GA
* * * *
22305098 GCTTAGACATCGAATGAACTCCCTACGCCTAAGCCAACCCACGAAATGGGCGTGC-GGCGCTCAG
1 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
* *
22305162 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTCCTATCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCC
* * * *
22305227 TACTGTCACAACCCTCAGTCTGGTCCGA
131 TGCTGCCACAACCCTCAGTCCGGTCTGA
* *
22305255 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-AGAATGAACTCCGTATGC
22305283 GTAGACTGGG
Statistics
Matches: 273, Mismatches: 63, Indels: 16
0.78 0.18 0.05
Matches are distributed among these distances:
156 1 0.00
157 103 0.38
158 80 0.29
159 89 0.33
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCC
TGCTGCCACAACCCTCAGTCCGGTCTGA
Found at i:22305305 original size:25 final size:25
Alignment explanation
Indices: 22305258--22305332 Score: 123
Period size: 25 Copynumber: 3.0 Consensus size: 25
22305248 GGTCCGATCT
22305258 TAGACTGGGAATGAACTCCGTATGCG
1 TAGACTGGG-ATGAACTCCGTATGCG
* *
22305284 TAGACTGGGATGAACTCTGTATGCT
1 TAGACTGGGATGAACTCCGTATGCG
22305309 TAGACTGGGATGAACTCCGTATGC
1 TAGACTGGGATGAACTCCGTATGC
22305333 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
25 37 0.80
26 9 0.20
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (25 bp):
TAGACTGGGATGAACTCCGTATGCG
Found at i:22305690 original size:171 final size:170
Alignment explanation
Indices: 22305306--22305819 Score: 573
Period size: 171 Copynumber: 3.0 Consensus size: 170
22305296 AACTCTGTAT
* *
22305306 GCTTAGAC-TGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * **
22305370 CCGACCGGAGAGGCATATTGCGAAAGTCGGGGATTAGCTCGGTCCCCCTCTGCATGCTGCTGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCTCT--ATG-TGCT-A--
* *
22305435 CCTGCTGATCC-GCTGCCGGTCCTGATGCCACAACCCTCAGTCCGACTGGG
125 -C--C-GATCCTGCTG-CGGTCCTGCTGCCACAACCCTCGGTCCGACTGGG
* * * * * *
22305485 GCTTAGACATGGAGTGAACTCCGTATACCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
22305550 CCGGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCTCTACGTGCTACCAATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCTCTATGTGCTACCGATC
*
22305615 CTGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGG
131 CTGCTG-CGGTCCTGCTGCCACAACCCTCGGTCCGACTGGG
* * * *
22305656 GCTTAGTCATGGAATGAACTCCGTATGCCTAAGCCAACTCACAAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * **
22305721 CCGGTCGGAGAGGTAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCCCTGTGTGCTGTCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCTCTATGTGCTACCGATC
* * *
22305786 CTGCTGCTGGTCTTGCTGTCAAAACCCTCGGTCC
131 CTGCTGC-GGTCCTGCTGCCACAACCCTCGGTCC
22305820 AGTCCAATCT
Statistics
Matches: 285, Mismatches: 47, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
170 5 0.02
171 173 0.61
173 1 0.00
176 1 0.00
177 4 0.01
178 2 0.01
179 8 0.03
180 91 0.32
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.20
Consensus pattern (170 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCTCTATGTGCTACCGATC
CTGCTGCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGG
Found at i:22305867 original size:26 final size:26
Alignment explanation
Indices: 22305828--22305880 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22305818 CCAGTCCAAT
*
22305828 CTTAGACTGTGAATGAACTCTGTATG
1 CTTAGACTGTGAATGAACTCCGTATG
22305854 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGTGAATGAACTCCGTATG
22305880 C
1 C
22305881 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGTGAATGAACTCCGTATG
Found at i:22306228 original size:158 final size:159
Alignment explanation
Indices: 22305853--22306355 Score: 421
Period size: 158 Copynumber: 3.2 Consensus size: 159
22305843 AACTCTGTAT
* * * *
22305853 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGTGGGCGTTCAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGTGTGCGGGCGCTCAG
* * * * * *
22305918 CCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCTCCTGCGTGCTGTCAATC
66 CAGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCTCCTGCGTGCTGTCAATC
* * * * *
22305983 CTGCTGCTGCAACCCTTGGTTCGGTCCGA
131 CCGCTGCTCCAACCCTCGGTCCGCTCCGA
* ** *
22306012 TCTT--ATACTGGGAATGAACTCCGTATGCCTAAG-TCAACCCACAAAATGAGTGTGCGGGCGCT
1 GCTTAGATA-T-GGAATGAACTCCGTATGCCTAAGCT-AACCCATGAAACGAGTGTGCGGGCGCT
* * * * *
22306074 GAGCAGACCGGAGAGGCATAATGCGTAAGCCAGGGTTCGACCCAGTCCCC-CTCTGCGTTCTGTC
63 CAGCAGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCTC-CTGCGTGCTGTC
** * *
22306138 GGTCCCGCTGC-CCAACCCTCGGTCCGACT-GGG
127 AATCCCGCTGCTCCAACCCTCGGTCCG-CTCCGA
* * * *
22306170 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACGGGCGTGCGGGCGTTCAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGTGTGCGGGCGCTCAG
* ** * * * * * * * * *
22306235 CCGGTCGGAGAGGTAGAATACGCAAGTCGGGGATCGGCTCGGTCCCC-CCTGCGTGCTGCCGATC
66 CAGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCTCCTGCGTGCTGTCAATC
* * * *
22306299 CTGC-GGTCGCAACCCTCGGTCCGGTCTGA
131 CCGCTGCTC-CAACCCTCGGTCCGCTCCGA
* * *
22306328 TCTTAGA-CTGGAGATGAACTCCATATGC
1 GCTTAGATATGGA-ATGAACTCCGTATGC
22306356 TTAGACTAAG
Statistics
Matches: 271, Mismatches: 61, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 24 0.09
158 133 0.49
159 110 0.41
160 3 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.21
Consensus pattern (159 bp):
GCTTAGATATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGTGTGCGGGCGCTCAG
CAGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCTCCTGCGTGCTGTCAATC
CCGCTGCTCCAACCCTCGGTCCGCTCCGA
Found at i:22306989 original size:11 final size:11
Alignment explanation
Indices: 22306968--22306992 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22306958 CTCTCCGGTA
22306968 ATGCTCCGGCG
1 ATGCTCCGGCG
22306979 ATGCTCCGGCG
1 ATGCTCCGGCG
22306990 ATG
1 ATG
22306993 GTGCCCTAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.12, C:0.32, G:0.36, T:0.20
Consensus pattern (11 bp):
ATGCTCCGGCG
Found at i:22307100 original size:26 final size:26
Alignment explanation
Indices: 22307062--22307114 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22307052 GGCTCAAAAT
22307062 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22307088 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22307114 C
1 C
22307115 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22313368 original size:26 final size:26
Alignment explanation
Indices: 22313317--22313369 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22313307 CCGGTCTGAT
* *
22313317 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
22313343 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
22313369 C
1 C
22313370 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22313737 original size:26 final size:25
Alignment explanation
Indices: 22313698--22313749 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
22313688 CTGGTCTGAT
22313698 CTTAGACTGGAATGAACTCCATATG
1 CTTAGACTGGAATGAACTCCATATG
*
22313723 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCATATG
22313749 C
1 C
22313750 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:22314089 original size:26 final size:26
Alignment explanation
Indices: 22314050--22314101 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
22314040 TTAGACTGGA
22314050 TTAGACTCAGGATGAACTCCGTATGC
1 TTAGACTCAGGATGAACTCCGTATGC
*
22314076 TTAGACTCATGATGAACTCCGTATGC
1 TTAGACTCAGGATGAACTCCGTATGC
22314102 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
TTAGACTCAGGATGAACTCCGTATGC
Found at i:22315338 original size:159 final size:157
Alignment explanation
Indices: 22314769--22315361 Score: 476
Period size: 159 Copynumber: 3.8 Consensus size: 157
22314759 GGCTCAAAAT
* *
22314769 CTTAGACTGGTAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAAC
1 CTTAGACTGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** *
22314834 CCGTCAAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTATGTGCTGTCGGTCC
65 CGGTCAAAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGAGCTGTC-GTCC
** *
22314899 CGTTACCACAACCCTCGGTTTGGCTGGGG
129 CACTACCACAACCCTCGGTCTGGCTGGGG
* * * *
22314928 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACG----GA----ACGGGCGCTTAGT
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
22314985 CAG-CAAGAGAGGCAGAATGCACAAGTCGGGGAT-GAGCCTGGTCCCCC-CTGCGTA-CTATCGA
65 CGGTCAA-AGAGGCAGAATGCACAAGCCAGGGATCG-GCCCGGTCCCCCTCTGCG-AGCTGTCG-
* ** * ****
22315046 TCCTACTACCGTAACCCTCGGTCTGGTTCAAT
126 TCCCACTACCACAACCCTCGGTCTGGCTGGGG
* * * * * * * *
22315078 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAATGAGCGTGCAGGCACTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * ** * * *
22315143 CGACCGAAGAGGCATAATGCGTAAGTC-GAGGATCGGCTCGGTCCCCCTCTGCGAGCGGTCAGTC
65 CGGTCAAAGAGGCAGAATGCACAAGCCAG-GGATCGGCCCGGTCCCCCTCTGCGAGCTGTC-GTC
* *
22315207 CCACTGCCACAACCCTCGGTCCGGCTGGGG
128 CCACTACCACAACCCTCGGTCTGGCTGGGG
* * * *
22315237 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * *
22315302 CGGTCGGAGAGGCAGAATGCATAAGCCAGGGTTCGGCCCAGTCCCCCT-TGCGTGCTGTCG
65 CGGTCAAAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGAGCTGTCG
22315362 ATCTTGCTGT
Statistics
Matches: 336, Mismatches: 76, Indels: 46
0.73 0.17 0.10
Matches are distributed among these distances:
149 2 0.01
150 67 0.20
151 45 0.13
154 2 0.01
155 2 0.01
157 2 0.01
158 50 0.15
159 160 0.48
160 6 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGTCAAAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGAGCTGTCGTCCCA
CTACCACAACCCTCGGTCTGGCTGGGG
Found at i:22316338 original size:26 final size:26
Alignment explanation
Indices: 22316300--22316352 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22316290 GGCTCAAAAT
22316300 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22316326 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22316352 C
1 C
22316353 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22318254 original size:157 final size:157
Alignment explanation
Indices: 22317903--22318320 Score: 487
Period size: 157 Copynumber: 2.6 Consensus size: 157
22317893 CTCCGTATAT
22317903 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * * * *
22317968 GGCCGGAGAGGCAGAATGCACAAGCCGGGGACCGACCCAATCCCCCCTGTATGCTGTCGATCCTG
66 GG-CGAAGAGGCAAAATGCGCAAGCCGGGGATCGACCCAATCCCCCCTGCATGCTGTCGATCCCG
* * * *
22318033 CTGCTGCAACCCTCGGTCTGGTTAAAAC
130 CTACTACAACCCTCGGTCCGGCTAAAAC
* * * ** *
22318061 TTAGACATGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACCAGCGTGCGGACGCTGAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* ** ** ** * *
22318126 GGTCGAAGAGGCATAATGCGCAAGCC-GGGATCGATTCGGTCCCCTTTGCGTGCTGTCGGTCCCG
66 GG-CGAAGAGGCAAAATGCGCAAGCCGGGGATCGACCCAATCCCCCCTGCATGCTGTCGATCCCG
* ****
22318190 CTACTACAACCCTTGGTCCGGCTGGTCC
130 CTACTACAACCCTCGGTCCGGCTAAAAC
* *
22318218 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * *
22318283 AGCCAGAGAGGTAAAATGCGCAAGCCGGGGATCGACCC
66 GGCGA-AGAGGCAAAATGCGCAAGCCGGGGATCGACCC
22318321 GGTCTGCCCT
Statistics
Matches: 214, Mismatches: 44, Indels: 4
0.82 0.17 0.02
Matches are distributed among these distances:
156 2 0.01
157 122 0.57
158 90 0.42
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.17
Consensus pattern (157 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
GGCGAAGAGGCAAAATGCGCAAGCCGGGGATCGACCCAATCCCCCCTGCATGCTGTCGATCCCGC
TACTACAACCCTCGGTCCGGCTAAAAC
Found at i:22318401 original size:158 final size:154
Alignment explanation
Indices: 22317903--22318401 Score: 509
Period size: 158 Copynumber: 3.2 Consensus size: 154
22317893 CTCCGTATAT
22317903 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * ** *
22317968 GGCCGGAGAGGCAGAATGCACAAGCCGGGGACCGACCCAATCCCCCCTGTATGCTGTCGATCCTG
66 GGCC-GAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGT--CCCCTGCATGCTGTCGATCCTG
* * * *
22318033 CTGCTGCAACCCTCGGTCTGGTTAAAAC
128 CTACTGCAACCCTCGGTCCGGTT-GATC
* * * ** *
22318061 TTAGACATGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACCAGCGTGCGGACGCTGAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * ** * * *
22318126 GGTCGAAGAGGCATAATGCGCAAGCC-GGGATCGATTCGGTCCCCTTTGCGTGCTGTCGGTCCCG
66 GGCCG-AGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCC--TGCATGCTGTCGATCCTG
* * * *
22318190 CTACTACAACCCTTGGTCCGGCTGGTCC
128 CTACTGCAACCCTCGGTCCGGTTGAT-C
* *
22318218 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * **
22318283 AGCCAGAGAGGTAAAATGCGCAAGCCGGGGATCGACCCGGTCTGCCCTGCATATTG-CTGATCCT
66 GGCC-GAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTC--CCCTGCATGCTGTC-GATCCT
* * * *
22318347 ACTACCGTAACCCTCGATCCGGTTCGATC
127 GCTACTGCAACCCTCGGTCCGGTT-GATC
*
22318376 TTAGAC-TGGGAATGAACTTCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
22318402 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 55, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
155 4 0.01
157 122 0.44
158 144 0.52
159 2 0.01
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (154 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
GGCCGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCTGCATGCTGTCGATCCTGCTA
CTGCAACCCTCGGTCCGGTTGATC
Found at i:22318404 original size:26 final size:26
Alignment explanation
Indices: 22318375--22318427 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22318365 CCGGTTCGAT
*
22318375 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22318401 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22318427 C
1 C
22318428 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22318793 original size:26 final size:26
Alignment explanation
Indices: 22318755--22318807 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22318745 CCGGTCTGAT
22318755 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22318781 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
22318807 C
1 C
22318808 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22319040 original size:11 final size:11
Alignment explanation
Indices: 22319024--22319056 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
22319014 CAGTTAGGCT
22319024 CTCCGATGATG
1 CTCCGATGATG
*
22319035 CTCCGACGATG
1 CTCCGATGATG
22319046 CTCCGATGATG
1 CTCCGATGATG
22319057 GTGCCCCGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.30, G:0.27, T:0.24
Consensus pattern (11 bp):
CTCCGATGATG
Found at i:22319453 original size:158 final size:156
Alignment explanation
Indices: 22319151--22319442 Score: 381
Period size: 158 Copynumber: 1.9 Consensus size: 156
22319141 AACTCCGTAT
* * *
22319151 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGCGGGCGCTCAGTC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGTACGGGCGCTCAGCC
* * * * *
22319216 GATCGAAGAGGCAGAATGCACAAGCCAGGGATTAGCTCGGTCCCCCTCTGCATGCTGCTGGTCCC
66 GACCGAAGAGGCAGAATGCACAAGCCAGGGATCAGCTCGGTCCCCCTCTGCATGCTACCGATCCC
*
22319281 GCTGCACAACCCTCGATCCGACTGGG
131 ACTGCACAACCCTCGATCCGACTGGG
* *
22319307 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA--CGAGTACGGGCGCTCAG
* ** * * *
22319372 CCGGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGC-CTGGTCCCCC-CTGCGTGCTACCGAT
64 CCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCAGCTC-GGTCCCCCTCTGCATGCTACCGAT
*
22319435 CCTACTGC
128 CCCACTGC
22319443 CGAAACCCTC
Statistics
Matches: 115, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
156 45 0.39
157 18 0.16
158 52 0.45
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.17
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGTACGGGCGCTCAGCC
GACCGAAGAGGCAGAATGCACAAGCCAGGGATCAGCTCGGTCCCCCTCTGCATGCTACCGATCCC
ACTGCACAACCCTCGATCCGACTGGG
Found at i:22319507 original size:26 final size:26
Alignment explanation
Indices: 22319466--22319518 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22319456 CCAGTCCAAT
22319466 CTTAGACTGAGAATGAACAT-CGTATG
1 CTTAGACTGAGAATGAAC-TCCGTATG
* *
22319492 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
22319518 C
1 C
22319519 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:22320571 original size:26 final size:26
Alignment explanation
Indices: 22320530--22320579 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
22320520 CTAGTCCAAT
22320530 CTTAGACTAGGAATGAACTCCGTACG
1 CTTAGACTAGGAATGAACTCCGTACG
* *
22320556 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
22320580 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTACG
Found at i:22321056 original size:159 final size:158
Alignment explanation
Indices: 22320714--22321074 Score: 386
Period size: 158 Copynumber: 2.3 Consensus size: 158
22320704 CTCTGTACGT
* * * ** * *
22320714 TTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCATACGGGCACTAAGCC
* * * * *
22320779 GATCGAAGAGGCAGAATGCATAAGCCGGGGACCGATTCGATCCCCCCTGCGTGCTGTCAATCCTG
66 GATCGAAGAGGCAGAATGCATAAGCCGAGGACAGACTCGATCCCCCCTGCGTGCTGCCAATCCCG
* * * ** *
22320844 TTGTCGCAACCCTCGGTCCGATCTGATC
131 CTGCCACAACCCTCAATCCGATCTGACC
* * * *
22320872 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTAAACTCACGAAACGAGCATTCGGGCATTAAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCATACGGGCACTAAGC
* * * * * *
22320936 CGGTCGGAGAGGCATAATGCGTAAGCCGAGGATCAG-CTCGGTCCCCCTCTGCGTGCTGCCAGTC
65 CGATCGAAGAGGCAGAATGCATAAGCCGAGGA-CAGACTCGATCCCCC-CTGCGTGCTGCCAATC
*
22321000 CCGCTGCCACAACCCTCAATCCGA-CTAGGCC
128 CCGCTGCCACAACCCTCAATCCGATCT-GACC
* *
22321031 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAA
22321075 TGGGTGTGCG
Statistics
Matches: 165, Mismatches: 33, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
157 1 0.01
158 89 0.54
159 74 0.45
160 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCATACGGGCACTAAGCC
GATCGAAGAGGCAGAATGCATAAGCCGAGGACAGACTCGATCCCCCCTGCGTGCTGCCAATCCCG
CTGCCACAACCCTCAATCCGATCTGACC
Found at i:22321087 original size:159 final size:158
Alignment explanation
Indices: 22320714--22321115 Score: 396
Period size: 159 Copynumber: 2.5 Consensus size: 158
22320704 CTCTGTACGT
* ** * *
22320714 TTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTAAGCC
* * * * *
22320779 GATCGAAGAGGCAGAATGCATAAGCCGGGGACCGATTCGATCCCCCCTGCGTGCTGTCAATCCTG
66 GATCGAAGAGGCAGAATGCATAAGCCGAGGACAGACTCGATCCCCCCTGCGTGCTGCCAATCCCG
* * * ** *
22320844 TTGTCGCAACCCTCGGTCCGATCTGATC
131 CTGCCACAACCCTCAATCCGATCTGACC
** * * * *
22320872 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTAAACTCACGAAACGAGCATTCGGGCATTAAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTAAGC
* * * * * *
22320936 CGGTCGGAGAGGCATAATGCGTAAGCCGAGGATCAG-CTCGGTCCCCCTCTGCGTGCTGCCAGTC
65 CGATCGAAGAGGCAGAATGCATAAGCCGAGGA-CAGACTCGATCCCCC-CTGCGTGCTGCCAATC
*
22321000 CCGCTGCCACAACCCTCAATCCGA-CTAGGCC
128 CCGCTGCCACAACCCTCAATCCGATCT-GACC
* * * * * * *
22321031 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTAAGCC
* * *
22321096 AACCGGAGAGGCAGAATGCA
66 GATCGAAGAGGCAGAATGCA
22321116 CAAGTTGGGG
Statistics
Matches: 193, Mismatches: 46, Indels: 9
0.78 0.19 0.04
Matches are distributed among these distances:
157 1 0.01
158 89 0.46
159 102 0.53
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.19
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTAAGCC
GATCGAAGAGGCAGAATGCATAAGCCGAGGACAGACTCGATCCCCCCTGCGTGCTGCCAATCCCG
CTGCCACAACCCTCAATCCGATCTGACC
Found at i:22321662 original size:14 final size:14
Alignment explanation
Indices: 22321643--22321670 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
22321633 CTGCTTTTAA
22321643 GCCGATCGGAGAGG
1 GCCGATCGGAGAGG
22321657 GCCGATCGGAGAGG
1 GCCGATCGGAGAGG
22321671 CATAATGCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.50, T:0.07
Consensus pattern (14 bp):
GCCGATCGGAGAGG
Found at i:22321913 original size:373 final size:363
Alignment explanation
Indices: 22321006--22321946 Score: 868
Period size: 372 Copynumber: 2.6 Consensus size: 363
22320996 AGTCCCGCTG
* * * **
22321006 CCACAACCCTCAATCCGACTAGGCCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCAATCCGAC-AGGGCTTAGACATGGAATGAAC-ACATATGCAGAAGCCAACCCAC
* * * * * * * * ** ** * *
22321071 GAAATGGGTGTGCGGGCGCTCAGCCAACCGGAGAGGCAGAATGCACAAGTTGGGGAT--GCCCG-
64 GAAACGAGCGTG-AGGCACTCAGCCGACCGAAAAGGCAGAATGGGCAAGCCGAGGATCGGCCAGA
* * * * ** * * * * *
22321133 TCCCCCTGCGTGCTG-CTGATCCTGCTATCGTAATCCTCGATCCGATTCGATCTTAGTACTGGGA
128 TCCCCCTACATGCTGTC-GATCTTGCTACCACAACCCTCGGTCTGATCCAATCTTAG-ACTGGGA
* *
22321197 AT-AACTTCTTATGCTTAGACTAGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCAT
191 ATGAACTTCGTATGCTTAGACTAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCAT
* * *
22321261 GCGAGCGTTTAACCGATTGGAGAGGCCGTCCTGAGAGGTATAATGCACAAGCTGAGGATCAGCCC
256 GCGAGCGTTTAACCGATCGGAGAGGCCGTCCGGAGAGGCATAATGCACAAGCTGAGGATCAGCCC
*
22321326 GATCCCCCTCTGCGTGCTGTCGATCCCGCTGTCGGTCTTGCTA
321 GATCCCCCTCTGCGTGCTGTCGATCCCGCTATCGGTCTTGCTA
** * * *
22321369 CCACAACCCTCAATCCGATGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACG
1 CCACAACCCTCAATCCGACAGGGCTTAGACATGGAATGAAC-ACATATGCAGAAGCCAACCCACG
* * * * *
22321434 AAACGGGCGTGCAGGCACTCAGCCGACCGAAAAGGCAGAATGTGCAAGTCGGGGATCGGCCTGAT
65 AAACGAGCGTG-AGGCACTCAGCCGACCGAAAAGGCAGAATGGGCAAGCCGAGGATCGGCCAGAT
** *
22321499 CCCCCTACATGCTGTCGATCTTGCTGTCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATG
129 CCCCCTACATGCTGTCGATCTTGCTACCACAACCCTCGGTCTGATCCAATCTTAGACTGGGAATG
* *
22321564 AACTTCGTATGCTTAGACTGGGGATG-ACTCCGTTTGCCTAAGTCAACCCCACGAAAATGAGCAT
194 AACTTCGTATGCTTAGACT-AGGATGAACTCCGTATGCCTAAGTCAA-CCCACG-AAATGAGCAT
* * * *
22321628 GCGGGCTGCTTTTAAGCCGATCGGAGAGGGCCGAT-CGGAGAGGCATAATGCGCTAGCTGGGGAT
256 GCGAGC-G--TTTAA-CCGATCGGAGA-GGCCG-TCCGGAGAGGCATAATGCACAAGCTGAGGAT
* * *
22321692 CAGCCCGATGCCCCCTCTGTGT-CTGTCGATCCCTCTATC-GTCTTGCTTG
315 CAGCCCGAT-CCCCCTCTGCGTGCTGTCGATCCCGCTATCGGTCTTGC-TA
* * *
22321741 CCACAA-CCTCAACGTCTGGCAGGGCTTAGGACAT-GAA-GAA-ACATATGCCGAAGCCAACCCA
1 CCACAACCCTCAA--TCCGACAGGGCTTA-GACATGGAATGAACACATATGCAGAAGCCAACCCA
* * * * * * *
22321802 TGAAACGAGCGTG-GGCGCTCAGATCGGCCGGAGAGGCAGAATGGGCAAGCCGATGATCGGCTCA
63 CGAAACGAGCGTGAGGCACTCAG-CCGACCGAAAAGGCAGAATGGGCAAGCCGAGGATCGGC-CA
* * * ** *
22321866 GAGTCCGCCCTGCGTGCATGTTGATCTTGCTACCACAACCCTCGGTCTGATCTGATCTTA-ACTA
126 GA-TCC-CCCTACATGC-TGTCGATCTTGCTACCACAACCCTCGGTCTGATCCAATCTTAGACTG
*
22321930 GGAGTGAACTTCGTATG
188 GGAATGAACTTCGTATG
22321947 GCATAAGTCA
Statistics
Matches: 482, Mismatches: 72, Indels: 39
0.81 0.12 0.07
Matches are distributed among these distances:
362 89 0.18
363 18 0.04
364 13 0.03
365 79 0.16
366 11 0.02
367 15 0.03
368 9 0.02
369 30 0.06
370 36 0.07
371 26 0.05
372 90 0.19
373 61 0.13
374 5 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (363 bp):
CCACAACCCTCAATCCGACAGGGCTTAGACATGGAATGAACACATATGCAGAAGCCAACCCACGA
AACGAGCGTGAGGCACTCAGCCGACCGAAAAGGCAGAATGGGCAAGCCGAGGATCGGCCAGATCC
CCCTACATGCTGTCGATCTTGCTACCACAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAA
CTTCGTATGCTTAGACTAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGAG
CGTTTAACCGATCGGAGAGGCCGTCCGGAGAGGCATAATGCACAAGCTGAGGATCAGCCCGATCC
CCCTCTGCGTGCTGTCGATCCCGCTATCGGTCTTGCTA
Found at i:22322302 original size:26 final size:26
Alignment explanation
Indices: 22322266--22322318 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22322256 TCGATCACAT
*
22322266 CTTAGATTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
22322292 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
22322318 C
1 C
22322319 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:22324453 original size:159 final size:157
Alignment explanation
Indices: 22324093--22324856 Score: 630
Period size: 159 Copynumber: 4.8 Consensus size: 157
22324083 AACTCCATAT
* * * *
22324093 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAACGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAA
* * * *
22324158 CCGGCCGAAAAGTCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCT
66 CCGGCCGAAAAGGCAGAATGCGCAAGCCGAGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCT
* * * *
22324223 TACTGTCACAACCCTCGGTCTGGTCTGA
131 CACTGCCACAACCCTCGGTC-CGACTGA
* * *
22324251 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCA
* * * * * * *
22324315 GCGGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCTGATCCCCCTCTGCCTGCTGTCGGT
65 ACCGGCCGAAAAGGCAGAATGCGCAAGCCGAGGATCGGCCTGATCCCCC-CTGCGTGCTGTCGAT
* *
22324380 CTCACTGCCACAACCCTCAGTCCGACTGGG
129 CTCACTGCCACAACCCTCGGTCCGACT-GA
* *
22324410 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACGCACGAAATGAGCGTGC-AGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGA-GCGCTCA
* * * * * * * *
22324474 ACCGACCGAAAAGGCAGAATGTGCAAGCCAAGGACCGGCCTGGT-CCCCCTACATGTTGTCGATC
65 ACCGGCCGAAAAGGCAGAATGCGCAAGCCGAGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATC
* *
22324538 -CTACTGCCACAACCCTTGATCCGGTA-TGA
130 TC-ACTGCCACAACCCTCGGTCC-G-ACTGA
* * * * ** * * * *
22324567 TCTTAGA-TTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATAAGCATTCGAGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCA
* * * * * * * * *
22324631 GCCAGCCGGAGAGGCATAATGCACAA-CTCGGGGATCGGCCTGGTCCCCCTCTGAGTGCT-TCCG
65 ACCGGCCGAAAAGGCAGAATGCGCAAGC-CGAGGATCGGCCTGATCCCCC-CTGCGTGCTGT-CG
* * * ** *
22324694 GTCCCGCTGCCACAACCCTCGGTCCGGTTGGG
127 ATCTCACTGCCACAACCCTCGGTCCGACT-GA
* * * * * * *
22324726 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCAAGAAATGGGCATGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAA
* * * * * * **
22324791 CCGACCTG-AGAGGTAGAATGCACAAGCCGGGGATCGAGCC-GGTCCCCCCTTGTATGCTGTCGA
66 CCGGCC-GAAAAGGCAGAATGCGCAAGCCGAGGATCG-GCCTGATCCCCCC-TGCGTGCTGTCGA
22324854 TCT
128 TCT
22324857 TGCGCTGGTC
Statistics
Matches: 485, Mismatches: 98, Indels: 45
0.77 0.16 0.07
Matches are distributed among these distances:
156 3 0.01
157 112 0.23
158 114 0.24
159 247 0.51
160 9 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAA
CCGGCCGAAAAGGCAGAATGCGCAAGCCGAGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCT
CACTGCCACAACCCTCGGTCCGACTGA
Found at i:22324667 original size:316 final size:317
Alignment explanation
Indices: 22324093--22324855 Score: 940
Period size: 316 Copynumber: 2.4 Consensus size: 317
22324083 AACTCCATAT
* * * *
22324093 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAACGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAA
* * * * * * * *
22324158 CCGGCCGAAAAGTCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCT
66 CCGACCGAAAAGGCAGAATGCGCAAGCCAAGGACCGACCCGATCCCCCCTACATGCTGTCGATCC
* * * *
22324223 TACTGTCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
131 TACTGCCACAACCCTCGATCCGGTATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * ** *
22324288 CCCACGAAACGAGCGTGCGAGCGCTGAGCGGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGG
196 CCCACGAAACAAGCATGCGAGCGCTGAGCCAGCCGAAGAGGCATAATGCACAAGCCGGGGATCGG
* *
22324353 CCTGATCCCCCTCTGCCTGCTGT-CGGTCTCACTGCCACAACCCTCAGTCCGACTGGG
261 CCTGATCCCCCTCTGACTGCT-TCCGGTCCCACTGCCACAACCCTCAGTCCGACTGGG
* *
22324410 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACGCACGAAATGAGCGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAA
* * * * *
22324475 CCGACCGAAAAGGCAGAATGTGCAAGCCAAGGACCGGCCTGGT-CCCCCTACATGTTGTCGATCC
66 CCGACCGAAAAGGCAGAATGCGCAAGCCAAGGACCGACCCGATCCCCCCTACATGCTGTCGATCC
* * *
22324539 TACTGCCACAACCCTTGATCCGGTATGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAA
131 TACTGCCACAACCCTCGATCCGGTATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
22324604 CCCACGAAATAAGCATTCGAGTGCTGAGCCAGCCGGAGAGGCATAATGCACAA-CTCGGGGATCG
196 CCCACGAAACAAGCATGCGAGCGCTGAGCCAGCCGAAGAGGCATAATGCACAAGC-CGGGGATCG
* * * * **
22324668 GCCTGGTCCCCCTCTGAGTGCTTCCGGTCCCGCTGCCACAACCCTCGGTCCGGTTGGG
260 GCCTGATCCCCCTCTGACTGCTTCCGGTCCCACTGCCACAACCCTCAGTCCGACTGGG
* * * * *
22324726 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCAAGAAATGGGCATGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAA
* * * ** * * * **
22324791 CCGACCTG-AGAGGTAGAATGCACAAGCCGGGGATCGAGCCGGTCCCCCCTTGTATGCTGTCGAT
66 CCGACC-GAAAAGGCAGAATGCGCAAGCCAAGGACCGACCCGATCCCCCC-TACATGCTGTCGAT
22324855 C
129 C
22324856 TTGCGCTGGT
Statistics
Matches: 378, Mismatches: 63, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
315 2 0.01
316 265 0.70
317 99 0.26
318 12 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAA
CCGACCGAAAAGGCAGAATGCGCAAGCCAAGGACCGACCCGATCCCCCCTACATGCTGTCGATCC
TACTGCCACAACCCTCGATCCGGTATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACAAGCATGCGAGCGCTGAGCCAGCCGAAGAGGCATAATGCACAAGCCGGGGATCGG
CCTGATCCCCCTCTGACTGCTTCCGGTCCCACTGCCACAACCCTCAGTCCGACTGGG
Found at i:22326443 original size:26 final size:25
Alignment explanation
Indices: 22326393--22326444 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
22326383 CCAGTCCGAT
**
22326393 CTTAGACTGGAATGAACGCTGTATG
1 CTTAGACTGGAATGAACGCCATATG
*
22326418 CTTAGACATGGAATGAACTCCATATG
1 CTTAGAC-TGGAATGAACGCCATATG
22326444 C
1 C
22326445 CTAAGCCACC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACGCCATATG
Found at i:22327673 original size:26 final size:26
Alignment explanation
Indices: 22327635--22327687 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22327625 GGCTCAAAAT
22327635 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22327661 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22327687 C
1 C
22327688 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22327954 original size:158 final size:157
Alignment explanation
Indices: 22327660--22328040 Score: 397
Period size: 158 Copynumber: 2.4 Consensus size: 157
22327650 AACTCCGTAT
* *
22327660 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCACG-AACGAGCGTGCGGGCACTCAA
* * * *** *
22327725 CCGGTCGGAGAGGCAGAATTTGCAAGCTGGGGATCGGCTCAGTCCCCCCCTGCGTGCTGTCGATC
64 CCGGCCGAAGAGGCAGAATGTGCAAGCCAAGGATCGGCCCAGTCCCCCCCTGCGTGCTGTCGATC
** * * * *
22327790 TTGCTGCTACAACCCTCGAT-CTGGTATGA
129 CCGCTGCCACAACCCTCAATCCAGCTA-GA
* * * * * *
22327819 TCTTAGAC-TGGGAATGAACTCTCTATGCATAAGTCAACCCACGAACGAGCGTGTGGGCGCTGAA
1 GCTTAGACAT-GGAATGAACTC-CTATGCCTAAGCCAACCCACGAACGAGCGTGCGGGCACTCAA
* * * * ** *
22327883 CTGGCCGAAGAGGCATAATGTGCAAGCCAAGGATTGGCCCGGTCCCCTTCTGCGTGCTGTCGGTC
64 CCGGCCGAAGAGGCAGAATGTGCAAGCCAAGGATCGGCCCAGTCCCCCCCTGCGTGCTGTCGATC
*
22327948 CCGCTGCCACAACCCTCAATCCAGCTAGG
129 CCGCTGCCACAACCCTCAATCCAGCTAGA
* * *
22327977 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCACG-AACGAGCGTGCGGGCACTCA
22328041 GTCGACCGGA
Statistics
Matches: 180, Mismatches: 36, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
158 122 0.68
159 57 0.32
160 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAACGAGCGTGCGGGCACTCAACC
GGCCGAAGAGGCAGAATGTGCAAGCCAAGGATCGGCCCAGTCCCCCCCTGCGTGCTGTCGATCCC
GCTGCCACAACCCTCAATCCAGCTAGA
Found at i:22334305 original size:26 final size:25
Alignment explanation
Indices: 22334266--22334317 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
22334256 CTGGTCCGAT
22334266 CTTAGACTGGAATGAACTCCATATG
1 CTTAGACTGGAATGAACTCCATATG
*
22334291 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCATATG
22334317 C
1 C
22334318 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:22334611 original size:158 final size:158
Alignment explanation
Indices: 22334290--22334633 Score: 383
Period size: 158 Copynumber: 2.2 Consensus size: 158
22334280 AACTCCATAT
*
22334290 GCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAAACCACGAAACGAGTGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGCACTCA
* * * * * * *
22334354 GCCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTCTGTGTGCTGCCGGTC
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATC
* * *
22334419 CCACTACCACAGCCCTCGGTCCAGCTAGG
130 CCACTACCACAACCCTCGATCCAGCTAGA
* * * *
22334448 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCC-AACCACCGAAACGGGCGTGTGGGCGCTTA
1 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAAACCA-CGAAACGAGCGTGCGGGCACTCA
* * *
22334512 GCCGATCGGAGAGGCAGAATGTGCAAGCC-GGGAATCGGCCCGATCCCCCCTGCGTGCTATCGAT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCAGGG-ATCGGCCCGATCCCCCCTGCGTGCTACCGAT
* * * * *
22334576 CCTACTGCCGCAACCCTTGATCCGGTCT-GA
129 CCCACTACCACAACCCTCGATCCAG-CTAGA
* *
22334606 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCTCTATGC
22334634 TTAGACTCAG
Statistics
Matches: 156, Mismatches: 25, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
157 9 0.06
158 144 0.92
159 3 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGCACTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCC
CACTACCACAACCCTCGATCCAGCTAGA
Found at i:22335888 original size:159 final size:158
Alignment explanation
Indices: 22335326--22335925 Score: 508
Period size: 159 Copynumber: 3.8 Consensus size: 158
22335316 GGCTCAAAAT
* * * *
22335326 CTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAAC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC-AG
* * * * ** *
22335391 CCCGTCAAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTATGTGCTGTCGATC
64 CCGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCTGCGAGCTGTCGATC
** *
22335456 CCGTTACCACAACCCTCCGGTTTGGCTGGGG
129 CCACTACCACAACCCT-CGGTCTGGCTGGGG
* *
22335487 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGGAAAC--G-G-GC--GC-TTCAG
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCAC-GAAACGAGCGTGCGGGCGCTCAG
* * * * *
22335545 TCGGCAAGAAGAGGCAGAATGCACAAGTC-GGGAT-GAGCCTGGT-CCCCTCTGCGTA-CTATCG
64 CCGGC-CGAAGAGGCAGAATGCACAAGCCAGGGATCGA-CCCGGTCCCCCTCTGCG-AGCTGTCG
* ** * ****
22335606 ATCCTACTACCGTAACCCCTCGGTCTGGTTCAAT
126 ATCCCACTACCACAA-CCCTCGGTCTGGCTGGGG
* * * * * * * *
22335640 CTTAAGACTGGAATGAACTCTGTATGCATAAGTCAACCCATG-AACGAGAGTGCAGGCACTGAGC
1 CTT-AGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * *
22335704 CGGCCGAAGAGGCATAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGAGCGGTC-AGTC
65 CGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCTGCGAGCTGTCGA-TC
* *
22335768 CCACTGCCACAACCCTCGGTCCGGCTGGGG
129 CCACTACCACAACCCTCGGTCTGGCTGGGG
* * * *
22335798 GTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
22335863 CGGCCGGAGAGGCAGAATGCATAAGCCAGGGATCGACCCAGTCCCCCT-TGCGTGCTGTCGATC
65 CGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCTGCGAGCTGTCGATC
22335926 TTGCTGTCGT
Statistics
Matches: 339, Mismatches: 78, Indels: 47
0.73 0.17 0.10
Matches are distributed among these distances:
151 3 0.01
152 1 0.00
153 65 0.19
154 21 0.06
155 24 0.07
156 2 0.01
157 24 0.07
158 72 0.21
159 84 0.25
160 1 0.00
161 37 0.11
162 5 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCTGCGAGCTGTCGATCCC
ACTACCACAACCCTCGGTCTGGCTGGGG
Found at i:22336015 original size:27 final size:26
Alignment explanation
Indices: 22335962--22336015 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22335952 CGATCCTAGA
* *
22335962 CTGGGAATGAACTTCGTATGCTTAGT
1 CTGGGAATGAAATTCGTATGCTAAGT
*
22335988 CTGGGGATGAAATTCGTATGCCTAAGT
1 CTGGGAATGAAATTCGTATG-CTAAGT
22336015 C
1 C
22336016 AATCCATGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (26 bp):
CTGGGAATGAAATTCGTATGCTAAGT
Found at i:22336897 original size:26 final size:26
Alignment explanation
Indices: 22336859--22336908 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
22336849 GGCTCAAAAT
22336859 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22336885 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
22336909 CGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22338811 original size:157 final size:158
Alignment explanation
Indices: 22338460--22338958 Score: 563
Period size: 158 Copynumber: 3.2 Consensus size: 158
22338450 CTCCGTATGT
*
22338460 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * ** * *
22338525 GGCCGGAGAGGCAGAATGCACAAGCCGGGGACCGACCCAATCCCCCCTGTATGCTGTCGATCCTG
66 GGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCCG
* ** * *
22338590 CTGCTGCAACCCTCGGTCTGGTTCGATC
131 CTACCACAACCCTCGGTCCGGCTCGATC
* * * *
22338618 TTAGACATGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACCAGCGTGCGGGCGCTGAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
** * * * * * ** * *
22338683 GATCGAAGAGGCATAATGCGTAAGCC-GGGATCAACTCGGTCCCCTTTGCGTGCTGTCGGTCCCG
66 GGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCCG
* *
22338747 CTACCACAACCCTTGGTCCGGCT-GGTGC
131 CTACCACAACCCTCGGTCCGGCTCGAT-C
* * *
22338775 TTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * **
22338840 GGCCGGAGAGGTAAAATGCGCAAGCCGGGGATCGACCCGGTCCGCCCTGCATACTGCCGATCCTA
66 GGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCCG
* * * *
22338905 CTGCCGCAACCCTCGGTCTGGTTCGATC
131 CTACCACAACCCTCGGTCCGGCTCGATC
*
22338933 TTAGAC-TGGGAATGAACTTCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
22338959 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 62, Indels: 8
0.80 0.18 0.02
Matches are distributed among these distances:
156 2 0.01
157 124 0.45
158 147 0.53
159 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCCG
CTACCACAACCCTCGGTCCGGCTCGATC
Found at i:22338961 original size:26 final size:26
Alignment explanation
Indices: 22338932--22338984 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22338922 CTGGTTCGAT
22338932 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
22338958 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
22338984 C
1 C
22338985 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:22339349 original size:26 final size:26
Alignment explanation
Indices: 22339311--22339363 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22339301 CCGGTCTGAT
22339311 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22339337 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
22339363 C
1 C
22339364 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22340006 original size:158 final size:158
Alignment explanation
Indices: 22339705--22340009 Score: 366
Period size: 158 Copynumber: 1.9 Consensus size: 158
22339695 AACTCCATAT
* * * *
22339705 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
22339770 CCGATCGAAGAGGCAGAATGCACAAGCCAGGGATTAGCTCGGTCCCCCTCTGCATGCTGCTGGTC
66 CCGAGCGAAGAGGCAGAATGCACAAGCCAGGGATCAGCTCGGTCCCCCTCTGCATGCTACCGATC
* *
22339835 CCGCTGCACAACCCTCGATCCGACTGGG
131 CCACTCCACAACCCTCGATCCGACTGGG
* *
22339863 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGGAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * *
22339928 TCG-GCGGAAGAGGCAGAATGCGTAAGCCGGGGATCGGC-CTGGTCCCCC-CTGCGTGCTACCGA
66 CCGAGC-GAAGAGGCAGAATGCACAAGCCAGGGATCAGCTC-GGTCCCCCTCTGCATGCTACCGA
*
22339990 TCCTACTACCGA-AACCCTCG
129 TCCCACT-CC-ACAACCCTCG
22340010 GTCCAGTCCA
Statistics
Matches: 123, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
157 17 0.14
158 105 0.85
159 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGAGCGAAGAGGCAGAATGCACAAGCCAGGGATCAGCTCGGTCCCCCTCTGCATGCTACCGATC
CCACTCCACAACCCTCGATCCGACTGGG
Found at i:22340063 original size:26 final size:26
Alignment explanation
Indices: 22340022--22340074 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22340012 CCAGTCCAAT
22340022 CTTAGACTGAGAATGAACAT-CGTATG
1 CTTAGACTGAGAATGAAC-TCCGTATG
* *
22340048 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
22340074 C
1 C
22340075 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:22341113 original size:26 final size:26
Alignment explanation
Indices: 22341084--22341133 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
22341074 CTAGTCCGAT
22341084 CTTAGACTAGGAATGAACTCCGTACG
1 CTTAGACTAGGAATGAACTCCGTACG
*
22341110 CTTAGACTAGGGATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
22341134 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTACG
Found at i:22341279 original size:26 final size:26
Alignment explanation
Indices: 22341241--22341296 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
22341231 CCGGTCCGAT
*
22341241 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22341267 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
22341293 CTTA
1 CTTA
22341297 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 1 0.04
26 27 0.96
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22341682 original size:159 final size:157
Alignment explanation
Indices: 22341267--22341759 Score: 438
Period size: 159 Copynumber: 3.1 Consensus size: 157
22341257 ACTCTGTATG
* * **
22341267 CTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAAT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * ** * *
22341332 CGACCGGAGAGGCAGAATGCATAAGCCGGGGA-CTGATTCGATCCCTCCTGCGTGCTGTCAATCC
66 CGACCGGAGAGGCAGAATGCATAAG-CAGGGATCAG-CCCGATCCCCCCTGCGTGCTGCCAATCC
* * * * *
22341396 TGCTGTCATAACCCTCAGTCCGATCTAAT
129 CGCTGCCACAACCCTCAATCCGATCTAAC
** * * ** *
22341425 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTAAACCCATGAAACGAGCGTTCGGGCATTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
** * * * *
22341489 CCGGTCGGAGAGGCATAATGCATAAGCCGAGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCAGTC
65 CCGACCGGAGAGGCAGAATGCATAAGCAG-GGATCAGCCCGATCCCCC-CTGCGTGCTGCCAATC
**
22341554 CCGCTGCCACAACCCTCAATCCGA-CTGGGC
128 CCGCTGCCACAACCCTCAATCCGATCT-AAC
* * * * *
22341584 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * ** *
22341649 CAACCGGAGAGGCAGAATGCACAAGTTAGGGATCGGCCCGAT-CCCCCTGCGTGCTGCTGATCCT
66 CGACCGGAGAGGCAGAATGCATAAG-CAGGGATCAGCCCGATCCCCCCTGCGTGCTGCCAATCCC
** * * ** *
22341713 GCTGCCGTAATCCTCGATCCGATCCGAT
130 GCTGCCACAACCCTCAATCCGATCTAAC
22341741 CTTAGAC-TGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
22341760 TCTTATGCTT
Statistics
Matches: 266, Mismatches: 60, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 53 0.20
158 91 0.34
159 119 0.45
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCATAAGCAGGGATCAGCCCGATCCCCCCTGCGTGCTGCCAATCCCG
CTGCCACAACCCTCAATCCGATCTAAC
Found at i:22341792 original size:26 final size:26
Alignment explanation
Indices: 22341741--22341793 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22341731 CCGATCCGAT
* *
22341741 CTTAGACTGGGAATGAACTTCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22341767 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
22341793 C
1 C
22341794 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22342163 original size:366 final size:367
Alignment explanation
Indices: 22341556--22342501 Score: 1309
Period size: 366 Copynumber: 2.6 Consensus size: 367
22341546 TGCCAGTCCC
*
22341556 GCTGCCACAACCCTCAATCCGACTGGGCCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * **
22341621 CCACGAAATGGGTGTGCGGGCGCTCAGCCAACCGGAGAGGCAGAATGCACAAGTTAGGGATCGGC
66 CCACGAAACGGGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGGC
* * * * *
22341686 CCGATCCCCCTGCGTGCTGCTGATCCTGCTGCCGTAATCCTCGATCCGATCCGATCTTAGACTGG
131 CCGATCCCCCTGCGTGCTGTTGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
*
22341751 GAATGAACTTCTTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG
196 GAATGAACTTCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG
* * *
22341816 CATGCGGGCGCTCAACCGACCAGAGAGGCCGGCCTGTGAGGCATAATGCACAAGCTGAAGATCAG
261 CATGCGGGCGCTCAACCGACCAGAGAGGCCGACCGGAGAGGCATAATGCACAAGCTGAAGATCAG
* *
22341881 CCCGATCCCCCTCTGCGTGCTGTCAATCCCGCTGTC-ATTTT
326 CCCGATCCCCCTCTGCGTGCTGTCAATCCCGCTATCGATCTT
*
22341922 GCTGCCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAAC
1 GCTGCCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * * *
22341987 CGACGAAACGGGCGTGCAGGCACTCAACCGACCGAAGAGGCAGAATGTACAAGCCGGGGATCGAC
66 CCACGAAACGGGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGGC
* * *
22342052 CCGATCCCCCTGCGTGCTGTTGATCCTGCTGTCGCAACCCTCGGTCTGGTCCAATCTTAGACTGG
131 CCGATCCCCCTGCGTGCTGTTGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
* *
22342117 GAATGAACTTCATATGCTTAGACTGGGGATGAACTCCGTTTGCCTAAGTCAACCCACGAAATGAG
196 GAATGAACTTCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG
* * * * * * **
22342182 CATGCGGGCGCTTAGCCGACCGGAGAGGCCGATCGGAGAGGCATAATGCGCTAGCTGGGGATCAG
261 CATGCGGGCGCTCAACCGACCAGAGAGGCCGACCGGAGAGGCATAATGCACAAGCTGAAGATCAG
* *
22342247 CCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTATCGGTCTT
326 CCCGATCCCCCTCTGCGTGCTGTCAATCCCGCTATCGATCTT
* *** * * * *
22342289 GCTGCCATAACCCTTGGTCTGGCAGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
1 GCTGCCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * ** *
22342354 CCATGAAACGAGCGTGCGGGTGCTCAATCGGCCGGAGAGGCAGAATGGGCAAGTCGAGGATCGGC
66 CCACGAAACGGGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGGC
* * * * *
22342419 TCGGTCCCCCCTGCGTGCTGTTGATCTTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTG
131 CCGAT-CCCCCTGCGTGCTGTTGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
*
22342484 GGAATGAACTTCGTATGC
195 GGAATGAACTTCATATGC
22342502 ATAAGTCAAC
Statistics
Matches: 505, Mismatches: 73, Indels: 2
0.87 0.13 0.00
Matches are distributed among these distances:
366 322 0.64
367 113 0.22
368 70 0.14
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (367 bp):
GCTGCCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGGGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGGC
CCGATCCCCCTGCGTGCTGTTGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
GAATGAACTTCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG
CATGCGGGCGCTCAACCGACCAGAGAGGCCGACCGGAGAGGCATAATGCACAAGCTGAAGATCAG
CCCGATCCCCCTCTGCGTGCTGTCAATCCCGCTATCGATCTT
Found at i:22342765 original size:169 final size:167
Alignment explanation
Indices: 22342448--22342838 Score: 448
Period size: 169 Copynumber: 2.3 Consensus size: 167
22342438 GTTGATCTTG
* *
22342448 CTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACC
1 CTGCCACAACCCTCGGTCC-GTCTGAGCTTAGACTGGGAATGAACTTCGTATGCATAAGCCAACC
* * *
22342513 CACGAAACGAGTGCGGGCGCTGAGCCGGCCGAAGAGGCATAATGCACAAGCCGGGGATCAGCCCG
65 CACGAAACGAGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCG
*
22342578 ATCCCCCTCTGCATGCTGTCGATCCCGCTGCTGGTCCT
130 ATCCCCCTCTGCATGCTGTCGATCCCGCTACTGGTCCT
* * * *
22342616 ACTGCCACAACCCTCGGTCC-TCTGGCGCTTAGACAT-GGAATGACCTTCGTATGCCTACGCCAA
1 -CTGCCACAACCCTCGGTCCGTCT-GAGCTTAGAC-TGGGAATGAACTTCGTATGCATAAGCCAA
* * * * * * *
22342679 TCCATGAAATGAGCATGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATC-G
63 CCCACGAAACGAG--TGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCACAAGCCGGGGATCAG
* * *
22342743 ACCTGGTCCCCC-CTGCATGCTGTCGATCCTGCTACTGGTCCT
126 -CCCGATCCCCCTCTGCATGCTGTCGATCCCGCTACTGGTCCT
* * ** * *
22342785 CTGTCGCAACCCTCGGTCCGATCACATCTTAGACTGGGAATGAACTCCGTATGC
1 CTGCCACAACCCTCGGTCCG-TCTGAGCTTAGACTGGGAATGAACTTCGTATGC
22342839 TTAGACTGGG
Statistics
Matches: 186, Mismatches: 28, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
167 3 0.02
168 59 0.32
169 72 0.39
170 52 0.28
ACGTcount: A:0.21, C:0.32, G:0.27, T:0.20
Consensus pattern (167 bp):
CTGCCACAACCCTCGGTCCGTCTGAGCTTAGACTGGGAATGAACTTCGTATGCATAAGCCAACCC
ACGAAACGAGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGA
TCCCCCTCTGCATGCTGTCGATCCCGCTACTGGTCCT
Found at i:22342841 original size:26 final size:26
Alignment explanation
Indices: 22342812--22342864 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22342802 CCGATCACAT
22342812 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22342838 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22342864 C
1 C
22342865 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22343451 original size:26 final size:26
Alignment explanation
Indices: 22343415--22343467 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22343405 CTGGTCCCAT
22343415 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22343441 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22343467 C
1 C
22343468 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22343946 original size:159 final size:157
Alignment explanation
Indices: 22343453--22344037 Score: 484
Period size: 159 Copynumber: 3.7 Consensus size: 157
22343443 TAGACTGGGG
* ** * *
22343453 ATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGC-TGCGGGCACT--GCTTGTCGTAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGG
* * * * * * * *
22343515 CATAATGCGTAAGCCTGGGA-TCAGCCCGATTCCCCTCTGTGTGCTGTCAGTCCTGCTACCACAA
66 CAGAATGCGCAAGCCGGGGATTGA-CCCGA-TCCCCCCTGCGTGCTGCCAGTCCTGCTGCCACAA
*
22343579 CCCTCGGTCCGACTGGGGCTTAGACATGGA
129 CCCTCGGTCCG-CTGGGGCTTAGACATAGA
* * * * ** * *
22343609 ATGAACTCCGTATGGCTAAGCCAACCCATGAAATGAGCGTGTAGGCGCTCAGTCGGCCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGG
* * * * * * * ** * **
22343674 TAGAATGCACGAGCCGGGTATCCG-CTCGAT-CCCCCTACGTGCTATC-GATCCTACTGCTGCAA
66 CAGAATGCGCAAGCCGGGGAT-TGACCCGATCCCCCCTGCGTGCTGCCAG-TCCTGCTGCCACAA
* * * **
22343736 CCCTCGGTACGGGTTCGATCTTAGAC-TAGGA
129 CCCTCGGT-C-CGCTGGGGCTTAGACATA-GA
** ** * ** *
22343767 ATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTTTGGGCACTGAGCCAACCGAAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGG
* * * *
22343832 CATAATACGCAAGCTGGGGATTGACCCGATCCCCCTCTGCGTGCTGCCAGTCCCGCTGCCACAAC
66 CAGAATGCGCAAGCCGGGGATTGACCCGATCCCCC-CTGCGTGCTGCCAGTCCTGCTGCCACAAC
22343897 CCTCGGTCCAGCTGGGGCTTAGACATAGA
130 CCTCGGTCC-GCTGGGGCTTAGACATAGA
* * * * *
22343926 ATGAACTCCCTATGCCTAAGTGAACCCACGAAACGGGCGTGCGGGCACTCAACCGGCTGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGG
* * * *
22343991 TAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCCTGCGTGCTGCC
66 CAGAATGCGCAAGCCGGGGATTGACCCGATCCCCCCTGCGTGCTGCC
22344038 GAACCTGCTA
Statistics
Matches: 324, Mismatches: 90, Indels: 28
0.73 0.20 0.06
Matches are distributed among these distances:
156 35 0.11
157 39 0.12
158 95 0.29
159 125 0.39
160 29 0.09
161 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGG
CAGAATGCGCAAGCCGGGGATTGACCCGATCCCCCCTGCGTGCTGCCAGTCCTGCTGCCACAACC
CTCGGTCCGCTGGGGCTTAGACATAGA
Found at i:22344723 original size:26 final size:26
Alignment explanation
Indices: 22344685--22344737 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22344675 CTGATCCGAT
22344685 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22344711 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
22344737 C
1 C
22344738 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22345010 original size:159 final size:158
Alignment explanation
Indices: 22344710--22345476 Score: 670
Period size: 159 Copynumber: 4.8 Consensus size: 158
22344700 AACTCCATAT
* * *
22344710 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAATGAACGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * *
22344775 CCGGTCGAAAAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACGTGTTGTCGATCC
66 CCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCTGATCCCCCCTACGTGCTGTCGAT-C
* * * *
22344840 TTGCTGTCACAACCCTCAGTCCGGTCCGA
130 TCGCTGCCACAACCCTCGGTCCGGTCGGA
* * * * * *
22344869 TCATAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * *
22344933 GCGGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCTGATCCCCTTCTACCTGCTGTCGGT
65 GCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCTGATCCCC-CCTACGTGCTGTCGAT
* * *
22344998 CTCACTGCCACAACCCTCGGTCC-GACTGGG
129 CTCGCTGCCACAACCCTCGGTCCGGTC-GGA
* * *
22345028 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACGCACGAAACGAGCGTGCAGGCAGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGC-GCTCA
* * * * * ** * * * * *
22345093 ACCGGTCGAAAAGGCAGAATGTGCAAGCCAAGGACCGGCCTGGTCCCCCCTATGTGTTGTCGATC
65 GCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCTGATCCCCCCTACGTGCTGTCGATC
* * **
22345158 -CTGCTGCCACAACCCTTGATCCGGTATGA
130 TC-GCTGCCACAACCCTCGGTCCGGTCGGA
* * * * * * * * *
22345187 TCTTAGA-TTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGAGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * *
22345251 GCCAGCCGGAGAGGCATAATGCACAA-CTCGGGGATCGGCCTGGTCCCCCTCTGA-GTGCT-TCC
65 GCCGGCCGAAGAGGCATAATGCGCAAGC-CGGGGATCGACCTGATCCCCC-CT-ACGTGCTGT-C
* * * *
22345313 GGTCCCGCTGCCACAACCCTCGGTCCGGTTGGG
126 GATCTCGCTGCCACAACCCTCGGTCCGGTCGGA
* * * * * *
22345346 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAATGGGCATGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * *
22345411 CCGACCTG-AGAGGTAGAATGCACAAGCCGGGGATCGAGCC-GGTCCCCCCTTGCATGCTGTCGA
66 CCGGCC-GAAGAGGCATAATGCGCAAGCCGGGGATCGA-CCTGATCCCCCC-TACGTGCTGTCGA
22345474 TCT
128 TCT
22345477 TGCGGCTGGT
Statistics
Matches: 482, Mismatches: 106, Indels: 40
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 47 0.10
159 371 0.77
160 63 0.13
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCTGATCCCCCCTACGTGCTGTCGATCT
CGCTGCCACAACCCTCGGTCCGGTCGGA
Found at i:22345474 original size:318 final size:318
Alignment explanation
Indices: 22344710--22345479 Score: 912
Period size: 318 Copynumber: 2.4 Consensus size: 318
22344700 AACTCCATAT
* * * * *
22344710 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAATGAACGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAA
* * * *
22344775 CCGGTCGAAAAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCC-TACGTGTTGTCGATC
66 CCGGTCGAAAAGGCAGAATGCGCAAGCCGAGGATCGAGCCGGTCCCCCCTTGC-TGTTGTCGATC
* *
22344839 CTTGCTGTCACAACCCTCAGTCCGGTCCGATCATAGACTGGGAATGAACTCCGTATGCCTAAGTC
130 CTTGCTGCCACAACCCTCAGTCCGGTACGATCATAGACTGGGAATGAACTCCGTATGCCTAAGTC
* ** *
22344904 AACCCACGAAACGAGCATGCGGGCGCTGAGCGGGCCGAAGAGGCATAATGCGCAAGCCGGGGATC
195 AACCCACGAAACGAGCATGCGAGCGCTGAGCCAGCCGAAGAGGCATAATGCACAAGCCGGGGATC
* *
22344969 GACCTGATCCCCTTCTACCTGCTGTCGGTCTCACTGCCACAACCCTCGGTCCGACTGGG
260 GACCTGATCCCCCTCTACCTGCTGTCGGTCCCACTGCCACAACCCTCGGTCCGACTGGG
* * *
22345028 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACGCACGAAACGAGCGTGCAGGCAGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC-GGGAGCTCA
* * *
22345093 ACCGGTCGAAAAGGCAGAATGTGCAAGCCAAGGACCG-GCCTGGTCCCCCCTATG-TGTTGTCGA
65 ACCGGTCGAAAAGGCAGAATGCGCAAGCCGAGGATCGAGCC-GGTCCCCCCT-TGCTGTTGTCGA
* * * * *
22345156 TCC-TGCTGCCACAACCCT-TGATCCGGTATGATCTTAGATTGGGAATGAACTCTGTATGCCTAA
128 TCCTTGCTGCCACAACCCTCAG-TCCGGTACGATCATAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * *
22345219 GTCAACCCATGAAATGAGCGTTCGAGTGCTGAGCCAGCCGGAGAGGCATAATGCACAA-CTCGGG
192 GTCAACCCACGAAACGAGCATGCGAGCGCTGAGCCAGCCGAAGAGGCATAATGCACAAGC-CGGG
* * * * **
22345283 GATCGGCCTGGTCCCCCTCTGA-GTGCT-TCCGGTCCCGCTGCCACAACCCTCGGTCCGGTTGGG
256 GATCGACCTGATCCCCCTCT-ACCTGCTGT-CGGTCCCACTGCCACAACCCTCGGTCCGACTGGG
* * * * *
22345346 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAATGGGCATGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAA
** * * * * *
22345411 CCGACCTG-AGAGGTAGAATGCACAAGCCGGGGATCGAGCCGGTCCCCCCTTGCATGCTGTCGAT
66 CCGGTC-GAAAAGGCAGAATGCGCAAGCCGAGGATCGAGCCGGTCCCCCCTTGC-TGTTGTCGAT
22345475 -CTTGC
129 CCTTGC
22345480 GGCTGGTCCT
Statistics
Matches: 381, Mismatches: 58, Indels: 26
0.82 0.12 0.06
Matches are distributed among these distances:
316 2 0.01
317 47 0.12
318 271 0.71
319 60 0.16
321 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (318 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAA
CCGGTCGAAAAGGCAGAATGCGCAAGCCGAGGATCGAGCCGGTCCCCCCTTGCTGTTGTCGATCC
TTGCTGCCACAACCCTCAGTCCGGTACGATCATAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGCATGCGAGCGCTGAGCCAGCCGAAGAGGCATAATGCACAAGCCGGGGATCG
ACCTGATCCCCCTCTACCTGCTGTCGGTCCCACTGCCACAACCCTCGGTCCGACTGGG
Found at i:22345886 original size:159 final size:158
Alignment explanation
Indices: 22345544--22346045 Score: 490
Period size: 159 Copynumber: 3.2 Consensus size: 158
22345534 ACTCCATATA
* * * *
22345544 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTAAGC
* * * ** * * **
22345609 CGGTGGGAGAGGCAGAATGTGCAAGTCGAGGA-CCGATTGATCCCTCCTACGTGCTGTCGATCTT
66 CGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCTGGTCCCCCCTACGTGCTGTCGATCCC
*** *
22345673 GCTGTTGCAACCCTCGATCCGGTCCGAT
131 GCTGCCACAACCCTCGATCCGGTCCGAG
* * * *
22345701 CTTAGAC-TAGGAATGAACTCCATATGCGTAAGTCAACCCATGAAATGAGCGTTCGGGCACTAAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTAAG
* * ** *
22345765 CCGGTCGGAGAGGCATAATGCGCAAGTTGAGGATCAGCCTGGTCCCCCTCTGTGTGCTGTCGGTC
65 CCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCTGGTCCCCC-CTACGTGCTGTCGATC
* * * *
22345830 CCGCTGCCACAATCCTCGGTCCGG-CTGGGG
129 CCGCTGCCACAACCCTCGATCCGGTC-CGAG
* * * *
22345860 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTTAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTAAGC
* * * * * * * *
22345925 CGGCCAGAGAGGCAGAACGCGCAAGCCGGGGATCGGCCTGGTCCCCCCATGCGTGCTATCGATCC
66 CGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCTGGTCCCCCC-TACGTGCTGTCGATCC
** * * * *
22345990 TACTGCCCCAACCCTCGATTCGGTCTGAT
130 CGCTGCCACAACCCTCGATCCGGTCCGAG
*
22346019 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCATATGC
22346046 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 59, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
156 1 0.00
157 83 0.30
158 12 0.04
159 180 0.65
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTAAGC
CGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCTGGTCCCCCCTACGTGCTGTCGATCCC
GCTGCCACAACCCTCGATCCGGTCCGAG
Found at i:22346055 original size:26 final size:26
Alignment explanation
Indices: 22346019--22346071 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22346009 TCGGTCTGAT
*
22346019 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22346045 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
22346071 C
1 C
22346072 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22346428 original size:26 final size:26
Alignment explanation
Indices: 22346399--22346451 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22346389 CCAGTCCGAT
22346399 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
22346425 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
22346451 C
1 C
22346452 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22346924 original size:26 final size:26
Alignment explanation
Indices: 22346895--22346946 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
22346885 CGGTCCAATT
22346895 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* *
22346921 TTAGAGTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
22346947 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:22353543 original size:26 final size:26
Alignment explanation
Indices: 22353505--22353557 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22353495 GGCTCAAAAT
22353505 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
22353531 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
22353557 C
1 C
22353558 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:22354838 original size:158 final size:158
Alignment explanation
Indices: 22354536--22354826 Score: 370
Period size: 158 Copynumber: 1.8 Consensus size: 158
22354526 TCCCTCTGCC
* * **
22354536 GGTCCTGCTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATAGAATGAACTCTGTATGCCTAA
1 GGTCCGGCTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATAGAAAGAACTCCCTATGCCTAA
* ** * * * * *
22354601 GCCAACCCACGAAACGAACATGTGGGCGCTTAGCCGACCGGAGAGGTAGAATGCGCAAGTCGGGG
66 GCCAACCCACAAAACGAACATCCGAGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCGGGG
22354666 ATCGACCCGATCCCCCCTACGTGCTGTA
131 ATCGACCCGATCCCCCCTACGTGCTGTA
** *
22354694 GGTCCGGCTGCCACAACCCTTGGTCC-AGCT-GGGACTTAGACATGGAAAGAACTCCCTATGCCT
1 GGTCCGGCTGCCACAACCCTCAGTCCGA-CTAGGG-CTTAGACATAGAAAGAACTCCCTATGCCT
* ** * *
22354757 AAGCCAACCCTCAAAACGGGCGTCCGAGCGCTCAACCGACCGGAGAGGCAGAATGTGCAAGCCGG
64 AAGCCAACCCACAAAACGAACATCCGAGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCGG
22354822 GGATC
129 GGATC
22354827 AGATCGGTCC
Statistics
Matches: 111, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
157 4 0.04
158 107 0.96
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.16
Consensus pattern (158 bp):
GGTCCGGCTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATAGAAAGAACTCCCTATGCCTAA
GCCAACCCACAAAACGAACATCCGAGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCGGGG
ATCGACCCGATCCCCCCTACGTGCTGTA
Found at i:22356120 original size:354 final size:349
Alignment explanation
Indices: 22355568--22356557 Score: 1034
Period size: 354 Copynumber: 2.8 Consensus size: 349
22355558 CCCTTTGCAT
* * * * *
22355568 GCTGCAGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATTAACTCCCTAC
1 GCTGCCGGTCCTGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
* * * * * ** * * *
22355633 GCCTAACCCAACCCACAAAACGGGCATGCGGGTGCTCAACCGGCCGAAGAGGCAAAATGCGTAAG
66 GCCTAAGCCAACCTACGAAACGAGCATGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAG
* * * * * * * *
22355698 TCAGGGA-CTGG-CCGATCCCCC-ATGCGTGCTGCTGACCCTACTGCCGCAACCCTCAGTCCGGT
131 TCGGGGATC-GGCCCGATCCCCCTA-GCGTGCTACCGATCCTGCTACCGTAACCCTCAGTCTGGT
* *
22355760 CCGATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTC
194 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTC
* ** *
22355825 AACCAATGAAACGAGTGTGCGGGCACTCAGCCAACCGGATACGCATAATGCACAAGCCCGGGATC
259 AACCCATGAAACGAGCATGCGGGCACTCAGCCAACCGGAGACGCATAATGCACAAGCCCGGGATC
* *
22355890 AGCCCAATCCCCCTCTGCATGTTGTCGATCCC
324 AGCCCAATCCCACTCTGCA---TG-C--TACC
* *
22355922 GCTGCCGGTCCTGCTGCCACAACCCTCAGTCCGGCTAGGGCTTAGATATGGAATGAACTCCGTAT
1 GCTGCCGGTCCTGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
** * * *
22355987 GCCTAAGCCAACCTACGAAACGAGTGTGCGGGCGCTCAACCGATCGGAGAGGTAGAATGTGCATG
66 GCCTAAGCCAACCTACGAAACGAGCATGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAG
* * *
22356052 TCGGGGATCGGCCCGGTCCCCCTAGCGTGTTACCGATCCTGCTACCGTAGCCCTCAGTCTGG-CC
131 TCGGGGATCGGCCCGATCCCCCTAGCGTGCTACCGATCCTGCTACCGTAACCCTCAGTCTGGTCC
* * *
22356116 GATCTTAGACTGAGAATGAACTTCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAA
196 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAA
** ** * * * * **
22356181 CCCATGAAACGAGCATGCGGGTGCTCAGCCGGCTGGAGAGGTATAATGCGCAAGCTGGGGATCAG
261 CCCATGAAACGAGCATGCGGGCACTCAGCCAACCGGAGACGCATAATGCACAAGCCCGGGATCAG
* *
22356246 CCCGATCCCACTCTGCATGCTACT
326 CCCAATCCCACTCTGCATGCTACC
* * * *
22356270 GAT--C-G--C-ACTACCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTAT
1 GCTGCCGGTCCTGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
* * *
22356329 GCCTAAGCCAACCCT-CGAAACGAGCATACGGGCGCTCAGCCAATCGGAGAGGCAGAATGCGCAA
66 GCCTAAGCCAA-CCTACGAAACGAGCATGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAA
*
22356393 GTCGGGGATCAGCCCGATCCCTTCCTA-CGTGCTACCGATCCTACTACTGGTCCTACTACCGTAA
130 GTCGGGGATCGGCCCGATCCC--CCTAGCGTGCTACCGA---T-C--CT-G-----CTACCGTAA
* * * *
22356457 CCCTCAGTCTGGTTCGATCTTAGACTGGGAGTGAACTCCGTATGCTTAGACAT-GGAATGAACTC
181 CCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTT
* * *
22356521 CGTATGCCTAAGCCAACCCACGAAACGAGCATACGGG
245 CGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGG
22356558 TGCTCAACCG
Statistics
Matches: 532, Mismatches: 84, Indels: 38
0.81 0.13 0.06
Matches are distributed among these distances:
342 119 0.22
343 14 0.03
344 4 0.01
345 1 0.00
346 2 0.00
347 1 0.00
348 4 0.01
349 2 0.00
350 2 0.00
351 2 0.00
354 244 0.46
355 59 0.11
356 77 0.14
357 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (349 bp):
GCTGCCGGTCCTGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
GCCTAAGCCAACCTACGAAACGAGCATGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAG
TCGGGGATCGGCCCGATCCCCCTAGCGTGCTACCGATCCTGCTACCGTAACCCTCAGTCTGGTCC
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAA
CCCATGAAACGAGCATGCGGGCACTCAGCCAACCGGAGACGCATAATGCACAAGCCCGGGATCAG
CCCAATCCCACTCTGCATGCTACC
Found at i:22356517 original size:26 final size:26
Alignment explanation
Indices: 22356475--22356527 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22356465 CTGGTTCGAT
*
22356475 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22356501 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22356527 C
1 C
22356528 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22356829 original size:156 final size:158
Alignment explanation
Indices: 22356500--22356859 Score: 338
Period size: 156 Copynumber: 2.3 Consensus size: 158
22356490 AACTCCGTAT
* * *
22356500 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTACGTATGCATAAGCCAACCCACGAAACGAGCATACGGGCGCTCAA
* ** * * *
22356565 CCGACCAGAGAGGTAGAATGCGTAAGTCAGGGATCAGCCCGGTCCCCCCTACATGCTATCGATCT
66 CCGACCAGAAAGACAGAATGCGCAAGTCAGGGATCAGCCCGGTCCCCCCTACATGCTAGCGATCC
* *
22356630 TGCTGCCACAACCCTCGATCTGATTCGA
131 CGCTGCCACAACCCTCGATCTGAATCGA
* * * * * *
22356658 TCTTAGTC-TAGGAATGAACTACGTATGCATAAGTCAACCCACGAAATGAG-AGTTCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTACGTATGCATAAGCCAACCCACGAAACGAGCA-TACGGGCGCTC
* * * * *
22356721 AGCC-AGCCA-AAAGACATAATGCGCAAGTC-GGGATCGGCCCGGTCCCCCTCTGCGTGCT-GCA
64 AACCGA-CCAGAAAGACAGAATGCGCAAGTCAGGGATCAGCCCGGTCCCCC-CTACATGCTAGC-
* * * *
22356782 GGTCCCGCTGCCACAACCCTCGGTCT-AATGGG
126 GATCCCGCTGCCACAACCCTCGATCTGAATCGA
* * * ** *
22356814 GCTTAGACATGGAATGAAATCCCTACACCTAAGCCAACCCACGAAA
1 GCTTAGACATGGAATGAACTACGTATGCATAAGCCAACCCACGAAA
22356860 TGGGTGTGCG
Statistics
Matches: 161, Mismatches: 35, Indels: 14
0.77 0.17 0.07
Matches are distributed among these distances:
156 57 0.35
157 48 0.30
158 56 0.35
ACGTcount: A:0.28, C:0.30, G:0.24, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTACGTATGCATAAGCCAACCCACGAAACGAGCATACGGGCGCTCAA
CCGACCAGAAAGACAGAATGCGCAAGTCAGGGATCAGCCCGGTCCCCCCTACATGCTAGCGATCC
CGCTGCCACAACCCTCGATCTGAATCGA
Found at i:22357001 original size:26 final size:26
Alignment explanation
Indices: 22356972--22357023 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
22356962 CCGATCCGAT
22356972 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGGATGAACTCCGTATGC
22356998 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGGATGAACTCCGTATGC
22357024 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGGATGAACTCCGTATGC
Found at i:22357715 original size:160 final size:159
Alignment explanation
Indices: 22357348--22357860 Score: 563
Period size: 158 Copynumber: 3.2 Consensus size: 159
22357338 CTGGGAATGA
* * *
22357348 ACTCCGTATGCTTAGACATGGAATGAACTCCGTCTGCCTAAGCCAACCCACGAAACGAGCGTGCA
1 ACTCCG-A-GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCG
* * * * ** *
22357413 GGCGCTCTGCCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCAAT-CCCCTCTACGTG
64 GGCGCTCAGCCGGTCGGAGAGGCAAAATGCGTAAGTCGGGGATCCGCCTGATCCCCCTCTGCGTG
22357477 CTGTCGATCCTGCTACCACAACCCTCGGTCC
129 CTGTCGATCCTGCTACCACAACCCTCGGTCC
* * * * *
22357508 AGTCCGATCTTAGAC-TGGTAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACGG
1 ACTCCGAGCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGG
* *
22357572 GCGCTGAGCCGGTCGGAGAGGCATAATGCGTAAGTCGGGGATCCGCCTGATCCCCCTCTTGCGTG
65 GCGCTCAGCCGGTCGGAGAGGCAAAATGCGTAAGTCGGGGATCCGCCTGATCCCCCTC-TGCGTG
* * *
22357637 CTGTCGGTCCAGCTACCACAACCCTCGGTCTG
129 CTGTCGATCCTGCTACCACAACCCTCGGTC-C
* * *
22357669 ACT-GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACATGCGG
1 ACTCCGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CATGCGG
* * * * * * *
22357732 GCACTCAACCGGCCAGAGAGGCAAAATGCGTAAGCCAGGGAT-CGACTCGATCCCCC-CTGCGTG
65 GCGCTCAGCCGGTCGGAGAGGCAAAATGCGTAAGTCGGGGATCCGCCT-GATCCCCCTCTGCGTG
* ** *
22357795 CTGCCGATCCTGCTGTCGCAACCCTCGGTCC
129 CTGTCGATCCTGCTACCACAACCCTCGGTCC
* * * *
22357826 AGTCTGATCTTAGAC-TGGGAATGAACTCTGTATGC
1 ACTCCGAGCTTAGACAT-GGAATGAACTCCGTATGC
22357861 TTAGACTGGG
Statistics
Matches: 295, Mismatches: 49, Indels: 20
0.81 0.13 0.05
Matches are distributed among these distances:
157 6 0.02
158 144 0.49
159 13 0.04
160 127 0.43
161 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
ACTCCGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGG
CGCTCAGCCGGTCGGAGAGGCAAAATGCGTAAGTCGGGGATCCGCCTGATCCCCCTCTGCGTGCT
GTCGATCCTGCTACCACAACCCTCGGTCC
Found at i:22357863 original size:26 final size:26
Alignment explanation
Indices: 22357834--22357886 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22357824 CCAGTCTGAT
*
22357834 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22357860 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22357886 C
1 C
22357887 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22358593 original size:26 final size:26
Alignment explanation
Indices: 22358555--22358607 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22358545 GGCTCAAAAT
22358555 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22358581 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22358607 C
1 C
22358608 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22358937 original size:26 final size:26
Alignment explanation
Indices: 22358897--22358947 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
22358887 CGGTCTGATC
22358897 TTAGACTGGGAATGAACTACGTATGT
1 TTAGACTGGGAATGAACTACGTATGT
* * *
22358923 TTAGATTGGGGATGAACTTCGTATG
1 TTAGACTGGGAATGAACTACGTATG
22358948 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.10, G:0.29, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTACGTATGT
Found at i:22360032 original size:26 final size:26
Alignment explanation
Indices: 22359991--22360069 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
22359981 CTGATTCGAT
* *
22359991 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACCGGGGATGAACTCCATATG
22360017 CTTAGACCGGGGATGAACTCCATATG
1 CTTAGACCGGGGATGAACTCCATATG
22360043 CTTAGACCGGGGATGAACTCCATATG
1 CTTAGACCGGGGATGAACTCCATATG
22360069 C
1 C
22360070 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (26 bp):
CTTAGACCGGGGATGAACTCCATATG
Found at i:22360423 original size:26 final size:26
Alignment explanation
Indices: 22360394--22360447 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
22360384 CCGATCTGAT
22360394 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
22360420 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
22360446 CT
1 CT
22360448 GAAGCCAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22360847 original size:26 final size:26
Alignment explanation
Indices: 22360809--22360861 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22360799 GGCTCAAACT
*
22360809 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22360835 CTTAGACAT-GGAATGGACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22360861 C
1 C
22360862 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22361180 original size:26 final size:26
Alignment explanation
Indices: 22361151--22361201 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
22361141 CCGATCCGAT
22361151 CTTAGACAAGGAATGAACTCCGTATA
1 CTTAGACAAGGAATGAACTCCGTATA
** *
22361177 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACAAGGAATGAACTCCGTAT
22361202 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATA
Found at i:22361473 original size:171 final size:171
Alignment explanation
Indices: 22361189--22361506 Score: 379
Period size: 171 Copynumber: 1.9 Consensus size: 171
22361179 TAGACTGGGG
* * * *
22361189 ATGAACTCCGTATGCCTAAGTCAACCGATGAAACGAGCGTACGGGTGCTCAGCCAGTCGTAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAACCAGTCGGAGAGG
* * ** * *
22361254 CATAATGCGTAACCCTGGGATTAGCCCGGTCCTCTTTCACGGGCTGCCGATCCCGCTGCCAGTCC
66 CAGAATGCGCAACCCAAGGATGAGCCCGGTCCCCTTTCACGGGCTGCCGATCCCGCTGCCAGTCC
* *
22361319 TGCTGCTACAACCCTCGGTCCAGCTGGGGCTTAGACATGGA
131 TACTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGA
** * **
22361360 ATGAACTCCGTATGTGTAAGCCAACCCATGAAACGAGCGTACGGGTGCTTAACTGGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAACCAGTCGGAGAGG
* * * * * **
22361425 TAGAATGCGCAAGCCAAGGATCGA-CCCGGTCCCCCTTT-GCGTGCTGCCGATCCTGCTGCTGGT
66 CAGAATGCGCAACCCAAGGAT-GAGCCCGGT-CCCCTTTCACGGGCTGCCGATCCCGCTGCCAGT
*
22361488 CCTACTGCCGCAACCCTCG
129 CCTACTGCCACAACCCTCG
22361507 ATCTGGTCTG
Statistics
Matches: 120, Mismatches: 25, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
171 113 0.94
172 7 0.06
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.21
Consensus pattern (171 bp):
ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAACCAGTCGGAGAGG
CAGAATGCGCAACCCAAGGATGAGCCCGGTCCCCTTTCACGGGCTGCCGATCCCGCTGCCAGTCC
TACTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGA
Found at i:22361891 original size:159 final size:158
Alignment explanation
Indices: 22361545--22362010 Score: 400
Period size: 159 Copynumber: 2.9 Consensus size: 158
22361535 AACTCTTTAT
** * *
22361545 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTATGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
* * * * * *
22361610 CCGGCCGAAGAGGCAGAATACGCAAGCTGGGGACCGGCCCGGTCCCCTCTGTGTTCTATCGATCC
66 CCGACCGAAGAGGCAGAATACGCAAGCTAGGGACCGACCCGATCCCCTCTGCGTGCTATCGATCC
** *
22361675 TGCTGCCGTAACCCTCGGTCCAGTTCGA
131 TGCTGCCACAACCCTCGGTCCAGCTCGA
* * * * * *
22361703 TCTAAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCA
* * ** ** * *
22361767 GCCGATCGGAGAGGCTTAATGTGCAAG-TCAGGGATCGACCCGATCCCCCTCTGCGTGCTGTC-A
65 GCCGACCGAAGAGGCAGAATACGCAAGCT-AGGGACCGACCCGAT-CCCCTCTGCGTGCTATCGA
** * *
22361830 GTCCTGCTGCCACAACCCTCGGTCTGGCTGGG
128 -TCCTGCTGCCACAACCCTCGGTCCAGCTCGA
* ** * ** *
22361862 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACTG-GTGTGTGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAAC-GAGCGTACGGGCGCTCA
* * * ** * * * * * *
22361926 GCCGACCGAAAAGGTAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATT
65 GCCGACCGAAGAGGCAGAATACGCAAGCTAGGGACCGACCCGATCCCCTCTGCGTGCTATCGATC
* *
22361991 CTGCTGTCGCAACCCTCGGT
130 CTGCTGCCACAACCCTCGGT
22362011 TCGGTCTGAT
Statistics
Matches: 244, Mismatches: 56, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 119 0.49
159 121 0.50
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
CCGACCGAAGAGGCAGAATACGCAAGCTAGGGACCGACCCGATCCCCTCTGCGTGCTATCGATCC
TGCTGCCACAACCCTCGGTCCAGCTCGA
Found at i:22362047 original size:158 final size:159
Alignment explanation
Indices: 22361546--22362047 Score: 518
Period size: 158 Copynumber: 3.2 Consensus size: 159
22361536 ACTCTTTATG
* *
22361546 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTATGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAGC
* * * * * * * * * *
22361611 CGGCCGAAGAGGCAGAATACGCAAGCTGGGGACCGGCCCGGTCCCCTCTGTGTTCTATCGATCCT
66 CGACCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
* * *
22361676 GCTGCCGTAACCCTCGGTCCAGT-TCGAT
131 GCTGCCGCAACCCTCGGTTCGGTCTCGAT
* * ** * * *
22361704 CTAAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAG
* * * * * * *
22361768 CCGATCGGAGAGGCT-TAATGTGCAAGTCAGGGATCGACCCGATCCCCCTCTGCGTGCTGTC-AG
65 CCGACCGAAGAGG-TAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGTCGA-
* * **
22361831 TCCTGCTGCCACAACCCTCGG-TCTGG-CTGGGG
127 TCCTGCTGCCGCAACCCTCGGTTC-GGTCTCGAT
* *
22361863 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACTG-GTGTGTGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-GAGCGTGTGGGTGCTCAG
* * *
22361927 CCGACCGAAAAGGTAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATTC
65 CCGACCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
*
22361992 TGCTGTCGCAACCCTCGGTTCGGTCT-GAT
130 TGCTGCCGCAACCCTCGGTTCGGTCTCGAT
*
22362021 CTTAGAC-TGGAAATGAACTTCGTATGC
1 CTTAGACATGG-AATGAACTCCGTATGC
22362048 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 58, Indels: 26
0.76 0.16 0.07
Matches are distributed among these distances:
157 4 0.01
158 143 0.52
159 124 0.45
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAGC
CGACCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTTCGGTCTCGAT
Found at i:22362050 original size:26 final size:26
Alignment explanation
Indices: 22362021--22362073 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22362011 TCGGTCTGAT
*
22362021 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
22362047 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
22362073 C
1 C
22362074 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:22363341 original size:26 final size:26
Alignment explanation
Indices: 22363290--22363342 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22363280 CTGGTCTGAT
*
22363290 CTTAGACTGGCAATGAACTCTATATG
1 CTTAGACTGGCAATGAACTCCATATG
*
22363316 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGCAATGAACTCCATATG
22363342 C
1 C
22363343 CCAAATCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:22363802 original size:26 final size:26
Alignment explanation
Indices: 22363749--22363803 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
22363739 CCCCCCTGCG
* *
22363749 TGCTTTGACTGGGAATGAACTCCGTA
1 TGCTTTGACTGGGAATGAACCCCATA
* *
22363775 TGCTTTGACTGGGGATGGACCCCATA
1 TGCTTTGACTGGGAATGAACCCCATA
22363801 TGC
1 TGC
22363804 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (26 bp):
TGCTTTGACTGGGAATGAACCCCATA
Found at i:22365521 original size:26 final size:26
Alignment explanation
Indices: 22365484--22365540 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
22365474 TGCTGCCGAT
*
22365484 CTTAGACTTGGAATGAACCCCGTATG
1 CTTAGACATGGAATGAACCCCGTATG
*
22365510 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACCCCGTATG
22365536 CTTAG
1 CTTAG
22365541 GCCATCCCAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACCCCGTATG
Found at i:22365710 original size:158 final size:157
Alignment explanation
Indices: 22365510--22366011 Score: 461
Period size: 158 Copynumber: 3.2 Consensus size: 157
22365500 ACCCCGTATG
* * * * * * *
22365510 CTTAGACATGGAATGAACTCCGTATGCTTAGGCCATCCCACGAAACGAGTGTACGGGCCCTCAAC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* *
22365575 CGATCGGAGAGGCAGAATGCGTAAGTCAGGGACCGGCTCGGTCCCCCCTGCGTGATATCGATCCT
66 CGATCGGAGAGGCAGAATGCGTAAG-CAGGGATCGGC-CGGTCCCCCCTGCGTGCTATCGATCCT
*
22365640 GCTGCTGCAACCCTCGGTCTGATCT-GAT
129 GCTGCCGCAACCCTCGGTCTGATCTCGAT
* * ** * *
22365668 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTTGGGTGCTGAGC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * * * *
22365733 TGGTCAGAGAAGCATAATGTGCAAGCCGGGGATCGGCCGGATCCCCCTCTGCATGCTATCGATCC
66 CGATCGGAGAGGCAGAATGCGTAAG-CAGGGATCGGCCGG-TCCCCC-CTGCGTGCTATCGATCC
* * * * **
22365798 CGCTGCCACAACCCTCGATCTGA-CTGGGG
128 TGCTGCCGCAACCCTCGGTCTGATCTCGAT
* * * * * * *
22365827 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGACGATCAGC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * * *
22365892 CGACCGAAGAGGTAGAATGCGTAAGCTGAGAATTGGCCCGGTCCCCCCTACGTGCTGTCGATCCT
66 CGATCGGAGAGGCAGAATGCGTAAGCAG-GGATCGG-CCGGTCCCCCCTGCGTGCTATCGATCCT
* * *
22365957 GCTACCGTAACCCTCGGTCTGGT-TCGAT
129 GCTGCCGCAACCCTCGGTCTGATCTCGAT
**
22365985 CTTAGATTGGGAATGAACTCCGTATGC
1 CTTAGACAGGGAATGAACTCCGTATGC
22366012 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 72, Indels: 12
0.76 0.21 0.03
Matches are distributed among these distances:
157 3 0.01
158 145 0.55
159 114 0.43
160 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGTAAGCAGGGATCGGCCGGTCCCCCCTGCGTGCTATCGATCCTGC
TGCCGCAACCCTCGGTCTGATCTCGAT
Found at i:22366021 original size:26 final size:26
Alignment explanation
Indices: 22365985--22366036 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
22365975 CTGGTTCGAT
*
22365985 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
22366011 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22366037 TGTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22371647 original size:26 final size:26
Alignment explanation
Indices: 22371599--22371651 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22371589 GTTGACTTAG
*
22371599 GCATACGGAGTTCATCCTTAGTCTAA
1 GCATACGGAGTTCATCCTCAGTCTAA
*
22371625 GCATATGGAGTTCAT-CTCCAGTCTAA
1 GCATACGGAGTTCATCCT-CAGTCTAA
22371651 G
1 G
22371652 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAGTCTAA
Found at i:22372136 original size:26 final size:26
Alignment explanation
Indices: 22372100--22372152 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22372090 GTTGGCTTAG
* *
22372100 GCATACGGAGTTCGTTC-CATGTCTAA
1 GCATACAGAGTTCATTCACA-GTCTAA
22372126 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
22372152 G
1 G
22372153 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:22372451 original size:171 final size:170
Alignment explanation
Indices: 22372161--22372652 Score: 529
Period size: 171 Copynumber: 2.9 Consensus size: 170
22372151 AGATCGGACT
* * * * * **
22372161 GGACCGAGGGTTTTGACAGCAAGACCAACAGTAGGATCGACAGCACACAG-GGGGGACCGGGCCG
1 GGACCGAGGGTTGTGGCAGCAAGACCGACAGCAGGATCGGCAGCACGTAGAGGGGGACCGGG-CG
* * * * * * * * * *
22372225 ATCCCCGGCTTGCACATTCTACCTCTCCGACTGGCTAAGCGCCCGCACGCTCGTTTTGTGAGTTG
65 ATCCCCGACTTACGCATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTG
22372290 GCTTAGGCATACGGAGTTCATTCCATGACTAAGCCCCAGAC
130 GCTTAGGCATACGGAGTTCATTCCATGACTAAGCCCCAGAC
* *
22372331 GGACCGAGGGTTGTGGCAGCAAGACCGACAGCAGGATTGGTAGCACGTAGAGGGGGACCGGGTCG
1 GGACCGAGGGTTGTGGCAGCAAGACCGACAGCAGGATCGGCAGCACGTAGAGGGGGACCGGG-CG
* * * *
22372396 ATCCTCGACTTACGCATTCTGCCCCTCCGACCGGTTGAGCACCCGCACACTCGTTTCATGGGTTG
65 ATCCCCGACTTACGCATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTG
* * * * *
22372461 GCTTAGGTATACGGAGTTCACTCCATGTCTAGGCCCCAGTC
130 GCTTAGGCATACGGAGTTCATTCCATGACTAAGCCCCAGAC
* * * * * * * * * *
22372502 GGACTGAGGGTTGTGGCATCAGGACCGGCAGCGGGATCAGCAGCATGTAGAGGGGGATCGAGCTA
1 GGACCGAGGGTTGTGGCAGCAAGACCGACAGCAGGATCGGCAGCACGTAGAGGGGGACCGGGC-G
* * ** *
22372567 ATCCCCGAC-TATCGCAATATGCCTCTCCGGTCGGTTGAGCCCCCGCACGCTCGTTTCGTGGGTT
65 ATCCCCGACTTA-CGCATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTT
* *
22372631 GACTTAGGCATACAGAGTTCAT
129 GGCTTAGGCATACGGAGTTCAT
22372653 CCTAGTCTAA
Statistics
Matches: 265, Mismatches: 54, Indels: 5
0.82 0.17 0.02
Matches are distributed among these distances:
170 44 0.17
171 221 0.83
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (170 bp):
GGACCGAGGGTTGTGGCAGCAAGACCGACAGCAGGATCGGCAGCACGTAGAGGGGGACCGGGCGA
TCCCCGACTTACGCATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGG
CTTAGGCATACGGAGTTCATTCCATGACTAAGCCCCAGAC
Done.