Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 218 of 402
Found at i:22372713 original size:26 final size:25
Alignment explanation
Indices: 22372638--22372714 Score: 127
Period size: 25 Copynumber: 3.0 Consensus size: 25
22372628 GTTGACTTAG
* *
22372638 GCATACAGAGTTCATCCTAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
22372663 GCATACGGAGTTCATCCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
22372688 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCA-TCCCAGTCTAA
22372714 G
1 G
22372715 ATCGGACCAG
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
25 37 0.76
26 12 0.24
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:22373155 original size:159 final size:156
Alignment explanation
Indices: 22372688--22373188 Score: 460
Period size: 159 Copynumber: 3.2 Consensus size: 156
22372678 CCCAGTCTAA
* * *
22372688 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACTGAGGGTTGTGACAGTAGGATCGAT
1 GCATACGGAGTTCATTCTCATGTCTAAGATCAGACCAGAC-GAGGGTTGTG-CAGCAGGATCGAT
* * * * * * * *
22372752 AGGACGCAGAGGGGACCGGGCCGATCCCCG-CTTACGCATTCTACCTCTCTGATCTGCTGAGCGC
64 AGCACGCAG-GGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* *
22372816 CCACACGCCCATTTCGTGGGTTGGCTTAG
128 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * ** * * *
22372845 GCGTAGGGAGTTCATTTTAATGTCTAAGCCCCAG-CCAAACCGAGGGTTGTGGCAAC-GAGACCG
1 GCATACGGAGTTCATTCTCATGTCTAAG-ATCAGACCAGA-CGAGGGTTGT-GCAGCAG-GATCG
* * * * * * * *
22372908 GTAGCACGCAAAGGGGGA-TCGGGTCGAT-CCCTAGGTTGCGTATTATGCCTCTTCGGCCGGCTC
62 ATAGCACGC--AGGGGGACT-GGGTCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGACCGGCTG
* * **
22372971 AACGCCCGCACGCTCATTTCGTGGGTTGACTTTT
123 AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
22373005 GCATACGGACTTCATTCTCA-GTCTAAGATCAGACCAGATCGAGGGTTGTAGTAGCAGGATCGAT
1 GCATACGGAGTTCATTCTCATGTCTAAGATCAGACCAGA-CGAGGGTTGT-GCAGCAGGATCGAT
22373069 AGCACGCAGGGGCAGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
64 AGCACGCAGGGG--GACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * *
22373134 CCTGCACACTCATTTCATGGGTTGGCTTAG
127 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
22373164 GCATACGGAGTTCATTC-CATGTCTA
1 GCATACGGAGTTCATTCTCATGTCTA
22373189 CGCATACATA
Statistics
Matches: 264, Mismatches: 63, Indels: 32
0.74 0.18 0.09
Matches are distributed among these distances:
157 21 0.08
158 41 0.16
159 133 0.50
160 69 0.26
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCTCATGTCTAAGATCAGACCAGACGAGGGTTGTGCAGCAGGATCGATAG
CACGCAGGGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCG
CACGCTCATTTCGTGGGTTGGCTTAG
Found at i:22373933 original size:26 final size:26
Alignment explanation
Indices: 22373887--22373939 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22373877 GTTGACTTAG
*
22373887 GCATATGAAGTTCATCTCCAGTTTAA
1 GCATATGAAGTTCATCTCCAGTCTAA
*
22373913 GCATATGGAGTTCAT-TCCCAGTCTAA
1 GCATATGAAGTTCATCT-CCAGTCTAA
22373939 G
1 G
22373940 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGAAGTTCATCTCCAGTCTAA
Found at i:22374276 original size:159 final size:157
Alignment explanation
Indices: 22373921--22374289 Score: 375
Period size: 159 Copynumber: 2.3 Consensus size: 157
22373911 AAGCATATGG
* * * * *
22373921 AGTTCATTCCCAGTCTAAGATCGGACTGGATCGA-GGTTGCGGTAGCAGGATCGACAGCACGTAA
1 AGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGTAA
* * * * * * *
22373985 GAGGGACCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTAAGCC
65 GAGGGACCAGGCCGATCCCCAGCTTACCCATTATGCCTCTCCGGCCGACTCAACGCCCGTAAGCC
* * *
22374050 CGTTTCATGGGTTGGCTTAGGCATAGGG
130 CATTTCATGGGTTGGCTTAGGCATACGA
* * ** * * * *
22374078 AGTTCATTCCATGTCAAAG-CCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGTA
1 AGTTCATTCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGTA
* * * * * *
22374142 GAGGGGGACCAGGCCAGTTCCCTA-CTTTCCCATTATGCCTCTCCGGTCGACTCAACGCCCGTAT
64 -AGAGGGACCAGGCC-GATCCCCAGCTTACCCATTATGCCTCTCCGGCCGACTCAACGCCCGTAA
*
22374206 GCTCATTTCATGGGTTGGCTTAGGCATACGA
127 GCCCATTTCATGGGTTGGCTTAGGCATACGA
* *
22374237 AGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGTAGCAGCAAGACC
1 AGTTCATTCC-AGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGACC
22374290 AGCAGTAGGA
Statistics
Matches: 166, Mismatches: 39, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
156 5 0.03
157 19 0.11
158 24 0.14
159 109 0.66
160 9 0.05
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
AGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGTAAG
AGGGACCAGGCCGATCCCCAGCTTACCCATTATGCCTCTCCGGCCGACTCAACGCCCGTAAGCCC
ATTTCATGGGTTGGCTTAGGCATACGA
Found at i:22374431 original size:26 final size:26
Alignment explanation
Indices: 22374401--22374452 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22374391 TTGGCTTAGG
22374401 CATACGAAGTTCATT-CCATGTCTAAC
1 CATACGAAGTTCATTCCCA-GTCTAAC
*
22374427 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGAAGTTCATTCCCAGTCTAAC
22374453 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAC
Found at i:22374646 original size:26 final size:26
Alignment explanation
Indices: 22374597--22374649 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22374587 GTTGGTTTAG
* * **
22374597 GCATACGGAGTTCATTTCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22374623 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22374649 G
1 G
22374650 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22374830 original size:26 final size:26
Alignment explanation
Indices: 22374794--22374846 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22374784 GTTGGCTTAG
* *
22374794 GCATACGGAGTTAATTCTATGTCTAA
1 GCATACGGAGTTAATTCCAAGTCTAA
*
22374820 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTAATTCCAAGTCTAA
22374846 G
1 G
22374847 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCAAGTCTAA
Found at i:22375014 original size:196 final size:196
Alignment explanation
Indices: 22374229--22375787 Score: 1620
Period size: 197 Copynumber: 8.0 Consensus size: 196
22374219 GTTGGCTTAG
* * * * *
22374229 GCATACGAAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGTAGCAGCAAGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCAGGACCAGCA
** * *
22374294 GTAGGATCGGTAGCAAGCA-GGGAGGGATCGGGTCGATCCCCGGCTTACGCGTTCTGCCTCTCCG
66 ACAGGATCGATAGCAAGCAGGGGA-GGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCG
* ** *
22374358 ACCGACTGAGCGCCCGCACGCTCGTTTCATCAGTTGGCTTAGGCATACGAAGTTCATTCCATGTC
130 -CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
22374423 TAA
194 TAA
* * * *
22374426 CCATACGGAGTTCATTCCCAGTCTAACATCGGACTGGACTGAGGGTTGCGGCAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCAGGACCAGCA
* * * * * * *
22374491 ACAGGATCGATAGCACGTAGGAGAGGATCGGGCCGATCCCCGGCATGCGCATTCTGCCTCTGCAG
66 ACAGGATCGATAGCAAGCAGGGGAGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCT-CCG
* * * * * * *
22374556 TCGACTGAGCGCCCGCACTCTCATTTCATGGGTTGGTTTAGGCATACGGAGTTCATTTCTTGTCT
130 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
22374621 AA
195 AA
* * * * * *
22374623 GCATACAGAGTTCATTCCCAGTCTAAGATCGGA-TCAGACCGAGGGTTGTAGTAGTAGGACCAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCAGCAGCAGGACCAGC
** * * * *
22374687 AGTAGGATCGACAGCAAGCAAGAGG-GGATCGGGTCGATCCCCGACTTACGCGTTCTGCCTCTCC
65 AACAGGATCGATAGCAAGC-AGGGGAGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCC
** * * *
22374751 GACC-AGCTGAGCGCCCGCACTTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTAATTCTATG
129 G-CCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
22374815 TCTAA
192 TCTAA
* * * * *
22374820 GCATACGGAGTTCATTCCAAGTCTAAGATCGGACTGGACTGAGGGTTACGGCAGCAAGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCAGGACCAGCA
* * * * * * *
22374885 ACAAGATCGATAGCATGCAGGGGAGGACCGGG-CCATCCCCGGCATGCGCATTCTGCCTTTCCAG
66 ACAGGATCGATAGCAAGCAGGGGAGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCC-G
* * * *
22374949 TCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGTTTAGGCATACAGAGTTCATTCCATGTCT
130 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
22375014 AA
195 AA
* *
22375016 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGTAGCAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCAGGACCAGCA
** * * *
22375081 GTAGGATCGGTAGCAAGCAGGGG-GGATCGGGTCGATCCTCAGCTTACGCATTCTGCCTCTCCGA
66 ACAGGATCGATAGCAAGCAGGGGAGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCG-
** * * * * * * *
22375145 TTGGCTAAGCGCCCACTCACTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCT
130 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
22375210 AA
195 AA
* * * * * * *
22375212 GCATACGGAGTTCATT-CCAGTCTAAAATCGGACTAGACTGAGGGTTACAGTAGTAGGACCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCAGGACCAGCA
* * * * *
22375276 ACAGGATCGATAGCATGCAGGAGAGGACCGAGTCGGTCCCCGGCTTACGCATTCTGCCTCTCCGG
66 ACAGGATCGATAGCAAGCAGGGGAGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCC-G
* * *
22375341 CCGACTGAGCGCCTGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
130 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
22375406 AA
195 AA
*** ** *
22375408 GCATACGGAGTTCATTCCCAGTCTAAGATAAAACCAGACCGAGGGTTGCGGC-GCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCAGGACCAGCA
* * * * * *
22375472 ACAGGATTGACAGCACGCAGGGG-GGACCGGGTCAATCCCCGGCTTACGCATTCTGCCTCTCTGG
66 ACAGGATCGATAGCAAGCAGGGGAGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTC-CG
* * * * *
22375536 CCGATTGAGTGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTC
130 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTC
22375600 TAA
194 TAA
* ** * *
22375603 GCATACGGAGTTCA-TCCCAGTCTAAGATCGAACCAGACCGAGGGTT--------ATGA-CAG-T
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCAGGACCAGCA
* * * * * ** * *
22375657 A-A-GATC-AGTAGCACGC-GGGGGGGACCAGGCCGATCCCCAACTTGCGCATTCTGCCTCTCTG
66 ACAGGATCGA-TAGCAAGCAGGGGAGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCG
* * * ** * *
22375718 ATCGGCTGAACGCCCGCGTGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
130 -CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
22375783 TAA
194 TAA
22375786 GC
1 GC
22375788 CCTAGCCGGA
Statistics
Matches: 1133, Mismatches: 208, Indels: 56
0.81 0.15 0.04
Matches are distributed among these distances:
182 9 0.01
183 95 0.08
184 1 0.00
185 1 0.00
186 3 0.00
187 3 0.00
194 30 0.03
195 170 0.15
196 397 0.35
197 415 0.37
198 9 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (196 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCAGGACCAGCA
ACAGGATCGATAGCAAGCAGGGGAGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGC
CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
A
Found at i:22375026 original size:26 final size:26
Alignment explanation
Indices: 22374990--22375042 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22374980 GTTGGTTTAG
22374990 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
22375016 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22375042 G
1 G
22375043 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22375222 original size:26 final size:25
Alignment explanation
Indices: 22375186--22375236 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
22375176 GTTGGCTTAG
*
22375186 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
22375212 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
22375237 AATCGGACTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:22375419 original size:26 final size:26
Alignment explanation
Indices: 22375382--22375434 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22375372 GTTGGCTTAG
22375382 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
22375408 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22375434 G
1 G
22375435 ATAAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22375627 original size:25 final size:26
Alignment explanation
Indices: 22375577--22375628 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22375567 GTTGACTTAG
22375577 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22375603 GCATACGGAGTTCAT-CCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22375628 G
1 G
22375629 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 11 0.42
26 15 0.58
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22376536 original size:29 final size:29
Alignment explanation
Indices: 22376491--22376551 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
22376481 ATCAGAGCAA
*
22376491 GTTTGATTCTGCGTGTTTGTGTTGTACAG
1 GTTTGATTCTGCATGTTTGTGTTGTACAG
*
22376520 GTTTGATTCTGCATGTTTGTGTTGTGCAG
1 GTTTGATTCTGCATGTTTGTGTTGTACAG
22376549 GTT
1 GTT
22376552 GGCTTCGGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.10, C:0.10, G:0.31, T:0.49
Consensus pattern (29 bp):
GTTTGATTCTGCATGTTTGTGTTGTACAG
Found at i:22376562 original size:29 final size:29
Alignment explanation
Indices: 22376495--22376562 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
22376485 GAGCAAGTTT
* * *
22376495 GATTCTGCGTGTTTGTGTTGTACAGGTTT
1 GATTCGGCATGTTTGTGTTGTACAGGTTG
* *
22376524 GATTCTGCATGTTTGTGTTGTGCAGGTTG
1 GATTCGGCATGTTTGTGTTGTACAGGTTG
*
22376553 GCTTCGGCAT
1 GATTCGGCAT
22376563 ATGGAGTTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.10, C:0.13, G:0.32, T:0.44
Consensus pattern (29 bp):
GATTCGGCATGTTTGTGTTGTACAGGTTG
Found at i:22376588 original size:26 final size:26
Alignment explanation
Indices: 22376559--22376611 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22376549 GTTGGCTTCG
*
22376559 GCATATGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCGCA-GTCTAA
22376585 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
22376611 G
1 G
22376612 ATTAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCGCAGTCTAA
Found at i:22376799 original size:26 final size:26
Alignment explanation
Indices: 22376769--22376821 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22376759 GATGGCTTAG
*
22376769 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
22376795 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22376821 G
1 G
22376822 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22378576 original size:26 final size:26
Alignment explanation
Indices: 22378546--22378598 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22378536 GTTGGCTTAG
22378546 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22378572 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22378598 G
1 G
22378599 TGTTTGACCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22379312 original size:26 final size:26
Alignment explanation
Indices: 22379282--22379334 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22379272 GTTGACTTAG
*
22379282 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* **
22379308 GCATATGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
22379334 G
1 G
22379335 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:22379623 original size:159 final size:158
Alignment explanation
Indices: 22379446--22379809 Score: 372
Period size: 158 Copynumber: 2.3 Consensus size: 158
22379436 CCACACACCA
* * *
22379446 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCTAGCCAGACCAAGGGT
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCCCAAACCAGACCAAGGGT
** * * * ** * *
22379511 TGTGGTAGCAGGACCGGCAGCACGCAGAGGGTGATGGGGTCGAT-CCCTGACTTGCACATTAAGC
66 TACGGTAGCAGGACCGACAGCACACAG-GGGGGACCGAGTCGATCCCCAG-CTTGCACATTAAGC
* *
22379575 CTCTCCGATCGGCTCAGCGCCCGCATGCTC
129 CTCTCCGACCGGCTCAGCGCCCGCACGCTC
* * * * ** ** *
22379605 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTTAGATCAAACTGGACCGAGGG
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTAATT-CCATGTCTAAGCCCAAACCAGACCAAGGG
* * * * * **
22379669 TTACGGTAGCAGGATCGATAGTACATAGGGGGGACCGAGTCGATCCCCAGCTTGCATATTCTGCC
65 TTACGGTAGCAGGACCGACAGCACACAGGGGGGACCGAGTCGATCCCCAGCTTGCACATTAAGCC
* * *
22379734 TCTTCGGCCGGCTGAGCGCCCGCACGCTC
130 TCTCCGACCGGCTCAGCGCCCGCACGCTC
* *
22379763 GTTTCATGGGTTGGCTTAGGCATATGGAGTTTATTCCATGTCTAAGC
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGC
22379810 ATAAAGAGTT
Statistics
Matches: 163, Mismatches: 39, Indels: 7
0.78 0.19 0.03
Matches are distributed among these distances:
157 3 0.02
158 85 0.52
159 72 0.44
160 3 0.02
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
GTTTCATGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCCCAAACCAGACCAAGGGT
TACGGTAGCAGGACCGACAGCACACAGGGGGGACCGAGTCGATCCCCAGCTTGCACATTAAGCCT
CTCCGACCGGCTCAGCGCCCGCACGCTC
Found at i:22380438 original size:159 final size:158
Alignment explanation
Indices: 22380192--22380496 Score: 369
Period size: 159 Copynumber: 1.9 Consensus size: 158
22380182 CAGACCGGAT
* * * * * **
22380192 CGAGGGTTGCGGCAGTAGGATCGGTAGCACACAGGGGGGATCGGGTCGATCCCTGGCTTGTGCAT
1 CGAGGGTTGCGGCAGCAGGACCGGCAGCACACAGGGGAGACCGGGTCGATCCCTGGCTTGCACAT
* * * * * **
22380257 TCTGCCTCTCCGACCAGCTGAGTGCCTGCATGCCCATTTCATGGGCTGGCTTAGGCATAGGGAGT
66 TCTACCTCTCCGACCAGCTGAGTACCTGCACGCCCATTTCACGAGCTGGCTTAGGCATACAGAGT
22380322 TCATT-CCATGTCTAAGCCCCAGCCAGAC
131 TCATTCCCA-GTCTAAGCCCCAGCCAGAC
* * *
22380350 CGAGGGTTGTGGCAGCAGGACCTGCAGCATACAGAGGGAGACCGGGTCGATCCCTGGCTTGCACA
1 CGAGGGTTGCGGCAGCAGGACCGGCAGCACACAG-GGGAGACCGGGTCGATCCCTGGCTTGCACA
* * * * * * *
22380415 TTCTACCTCTCTGACCGGTTGAGTACCTGTACGCTCGTTTCACGAGTTGGCTTAGGCATACAGAG
65 TTCTACCTCTCCGACCAGCTGAGTACCTGCACGCCCATTTCACGAGCTGGCTTAGGCATACAGAG
22380480 TTCATTCCCAGTCTAAG
130 TTCATTCCCAGTCTAAG
22380497 AGTTTGAGCC
Statistics
Matches: 121, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
158 28 0.23
159 90 0.74
160 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CGAGGGTTGCGGCAGCAGGACCGGCAGCACACAGGGGAGACCGGGTCGATCCCTGGCTTGCACAT
TCTACCTCTCCGACCAGCTGAGTACCTGCACGCCCATTTCACGAGCTGGCTTAGGCATACAGAGT
TCATTCCCAGTCTAAGCCCCAGCCAGAC
Found at i:22380887 original size:26 final size:26
Alignment explanation
Indices: 22380857--22380909 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
22380847 GTTGGCTTTG
22380857 GCATAC-AGAGTTCATT-CCATGTCTAA
1 GCATACGA-AGTTCATTCCCA-GTCTAA
22380883 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22380909 G
1 G
22380910 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22381255 original size:26 final size:26
Alignment explanation
Indices: 22381225--22381277 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22381215 GTTGACTTAG
* *
22381225 GCATATGGAGTTCATCCCCGGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22381251 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22381277 G
1 G
22381278 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22381733 original size:215 final size:216
Alignment explanation
Indices: 22381331--22381737 Score: 485
Period size: 215 Copynumber: 1.9 Consensus size: 216
22381321 CAGGGGGGAT
* * * ** * *
22381331 CGGGTCGATCCTCAGCTTACGTATTCTGCCTCTTTGACCGGCTGAGCGCCCGCACGCCCATTTCG
1 CGGGTCGATCCCCAGCTTACGCATTCTACCTCTCCGACCGACTGAGCGCCCGCACGCCCATTTCA
* *
22381396 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGT
66 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGC
* *** * * * * *
22381461 AGCAAGATCGGTAGCACGCAGACAGAGACCAGGCTGGTTCTTGACTTGCGTATTATGCCTCTCCG
131 AGCAAGACCAACAGCACGCAGACAGAGACCAGGCCGATCCTCGACTTGCGAATTATGCCTCTCCG
22381526 ATCGGCTCACGCAAGGGGAAC
196 ATCGGCTCACGCAAGGGGAAC
* * * ** **
22381547 CGGGTTGATCCCCAGCTTACGCGTTCTACCTCTCCGATCGACTGAGCGCTTGCACGCCTGTTTCA
1 CGGGTCGATCCCCAGCTTACGCATTCTACCTCTCCGACCGACTGAGCGCCCGCACGCCCATTTCA
* *
22381612 TGGGTT-GCATT-GGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGAACTAAGGGTTGTGG
66 TGGGTTGGC-TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGG
** ** * * *
22381675 CAGCTGGACCAACAGCACGCAGAGGGGGATCAGGCCGATCCTCGCCTTGCGAATTATGCCTCT
130 CAGCAAGACCAACAGCACGCAGACAGAGACCAGGCCGATCCTCGACTTGCGAATTATGCCTCT
22381738 TCGGCCAGCT
Statistics
Matches: 156, Mismatches: 34, Indels: 3
0.81 0.18 0.02
Matches are distributed among these distances:
215 97 0.62
216 59 0.38
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.24
Consensus pattern (216 bp):
CGGGTCGATCCCCAGCTTACGCATTCTACCTCTCCGACCGACTGAGCGCCCGCACGCCCATTTCA
TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGC
AGCAAGACCAACAGCACGCAGACAGAGACCAGGCCGATCCTCGACTTGCGAATTATGCCTCTCCG
ATCGGCTCACGCAAGGGGAAC
Found at i:22381978 original size:26 final size:26
Alignment explanation
Indices: 22381942--22381992 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
22381932 TTGGCTTAGG
22381942 CATACGGAGTTCATT-CCATGTCTAAC
1 CATACGGAGTTCATTCCCA-GTCTAAC
22381968 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
22381993 GATTGGACCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:22382338 original size:26 final size:26
Alignment explanation
Indices: 22382309--22382361 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22382299 GTTGACTTAG
*
22382309 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCATAGTCTAA
*
22382335 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATCCATAGTCTAA
22382361 G
1 G
22382362 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCATAGTCTAA
Found at i:22382652 original size:159 final size:158
Alignment explanation
Indices: 22382375--22382931 Score: 550
Period size: 158 Copynumber: 3.5 Consensus size: 158
22382365 AGACTGGATG
* * * * *
22382375 GAGGGTTGCGACAGCAGGATCGACAGCATGCAAGGGGGATCGGGTCGATCCCCGGCTTGCGCATT
1 GAGGGTTGCGGCAGCAGGACCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATT
* * * * * * * * *
22382440 CTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTT
66 ATTCCTCTCCGGCCGACTGAGCGCCTGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTT
22382505 CATTCCATGTCTAAGCCCCAGCCGGACC
131 CATTCCATGTCTAAGCCCCAGCCGGACC
* * * ** *
22382533 GAGGGTTGTGGCAGCGGGACCGACAGCATGCAGAGGGGGACCGGGCCGATCCTTGGCTTGTGCAT
1 GAGGGTTGCGGCAGCAGGACCGACAGCACGCA-AGGGGGACCGGGCCGATCCCCGGCTTGCGCAT
* * * * *
22382598 TATTCCTC-CCTGGCCGACTCAGCGCCTGAATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAG
65 TATTCCTCTCC-GGCCGACTGAGCGCCTGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAG
** * *
22382662 TTCATTCCCA-GTCTAAG-ATCAGACTGGACT
129 TTCATT-CCATGTCTAAGCCCCAG-CCGGACC
* * ** *
22382692 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGTCGATCCCTAGCTTACGCATT
1 GAGGGTTGCGGCAGCAGGACCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATT
* * * * *
22382757 -TTGCATCTCCGACCGTCTGAGCGCCTGCATGCCCGTTTCATAGGTTGGCTTAGGCATAAGGAGT
66 ATT-CCTCTCCGGCCGACTGAGCGCCTGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGT
*
22382821 TCATTCCATGTCTAAGCCCC-GCCGGATC
130 TCATTCCATGTCTAAGCCCCAGCCGGACC
** ** ** * * *
22382849 GAGGGTT-CTGGCAGTGGGACCGGTAGCACATAGAGGGGGACCGAGCCAATCCCCGGCTTGTGCA
1 GAGGGTTGC-GGCAGCAGGACCGACAGCACGCA-AGGGGGACCGGGCCGATCCCCGGCTTGCGCA
* *
22382913 TTATGCCTTTCCGGCCGAC
64 TTATTCCTCTCCGGCCGAC
22382932 CTCTTCGGCC
Statistics
Matches: 319, Mismatches: 69, Indels: 22
0.78 0.17 0.05
Matches are distributed among these distances:
156 1 0.00
157 32 0.10
158 158 0.50
159 125 0.39
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (158 bp):
GAGGGTTGCGGCAGCAGGACCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATT
ATTCCTCTCCGGCCGACTGAGCGCCTGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTT
CATTCCATGTCTAAGCCCCAGCCGGACC
Found at i:22382813 original size:158 final size:158
Alignment explanation
Indices: 22382335--22382836 Score: 584
Period size: 158 Copynumber: 3.2 Consensus size: 158
22382325 CCTAGTCTAA
* *
22382335 GCATACGGAGTTCATT-CATAGTCTAAGATCAGACTGGA-TGGAGGGTTGCGACAGCAGGATCGA
1 GCATAAGGAGTTCATTCCAT-GTCTAAGATCAGACTGGACT-GAGGGTTGCGGCAGCAGGATCGA
* * * * * *
22382398 CAGCATGCAAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTG
64 CAGCATGCAAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTTTGCCTCTCCGGCCGACTGAGCG
* * *
22382463 CCCGCACGCCCGTTTTGTGGGTTGGCTTAG
129 CCTGCATGCCCGTTTCGTGGGTTGGCTTAG
* ** * * * * *
22382493 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATAAGGAGTTCATTCCATGTCTAAG-ATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * *
22382557 AGCATGCAGAGGGGGACCGGGCCGATCCTTGGCTTGTGCATTATT-CCTC-CCTGGCCGACTCAG
65 AGCATGCA-AGGGGGACCGGGTCGATCCCTGGCTTGCGCATT-TTGCCTCTCC-GGCCGACTGAG
* * *
22382620 CGCCTGAATGCTCGTTTCGTGGGTTGACTTAG
127 CGCCTGCATGCCCGTTTCGTGGGTTGGCTTAG
*
22382652 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCGAC
1 GCATAAGGAGTTCATT-CCATGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * * * *
22382716 AGCACGCAAGGGGGACCGGGTCGATCCCTAGCTTACGCATTTTGCATCTCCGACCGTCTGAGCGC
65 AGCATGCAAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTTTGCCTCTCCGGCCGACTGAGCGC
* *
22382781 CTGCATGCCCGTTTCATAGGTTGGCTTAG
130 CTGCATGCCCGTTTCGTGGGTTGGCTTAG
22382810 GCATAAGGAGTTCATTCCATGTCTAAG
1 GCATAAGGAGTTCATTCCATGTCTAAG
22382837 CCCCGCCGGA
Statistics
Matches: 284, Mismatches: 49, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
157 5 0.02
158 147 0.52
159 128 0.45
160 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATAAGGAGTTCATTCCATGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCGACA
GCATGCAAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTTTGCCTCTCCGGCCGACTGAGCGCC
TGCATGCCCGTTTCGTGGGTTGGCTTAG
Found at i:22384194 original size:159 final size:158
Alignment explanation
Indices: 22383774--22384260 Score: 478
Period size: 159 Copynumber: 3.1 Consensus size: 158
22383764 CTCAGTCCAA
* * *
22383774 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATTGGA-TCGAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTTCCAGTCTAAGATCAGATCGGACT-GAGGGTTGCGGCAGCAGGATCGAC
* * * * * * ** * *
22383838 AGAACGTA-GGGTGACCAGGCAGATCCCCGTATTGCACATTCTGCCTCTCCGATCGGCTGAGCGC
65 AGCACGCAGGGGGGATCGGGCAGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
22383902 TCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 TCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * ** * ** * *
22383931 GCATAGGGAGTTCA-TTCCATGTCTAAGCCCTGGCCAGACCAAGGGTTGTGGCAGCAGGATCGAT
1 GCATACGGAGTTCATTTCCA-GTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * *
22383995 AGCACGCAGAGGGGGATTGGGCCGAT-CTTCAGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGC
65 AGCACGCAG-GGGGGATCGGGCAGATCCCT-GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* * * *
22384059 GCCCACACGCTCGTTTCATGGGTTGACTTAG
128 GCTCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
22384090 GCATACAGAGTTCATTTCCAGTCTAAGATCAGATCGGACTGGGGGTTGCGGCAACAGGATCGACA
1 GCATACGGAGTTCATTTCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
22384155 GCATGCAGGGGGAGATCGGGCTGGTCCCTGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGC
66 GCACGCAGGGGG-GATCGGGCAGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * * *
22384220 TTGTATGCTCATTTCGTGGGTTGGCTTAG
130 TCGCACGCTCGTTTCGTGGGTTGGCTTAG
22384249 GCATACGGAGTT
1 GCATACGGAGTT
22384261 TATTCCATGC
Statistics
Matches: 254, Mismatches: 68, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
156 4 0.02
157 51 0.20
158 5 0.02
159 187 0.74
160 7 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTTCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGATCGGGCAGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCT
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:22385335 original size:26 final size:26
Alignment explanation
Indices: 22385299--22385349 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
22385289 TGACTTAGGC
22385299 ATACGGAGTTCATCCCTAGTCTAAGT
1 ATACGGAGTTCATCCCTAGTCTAAGT
*
22385325 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATCCCTAGTCTAAG
22385350 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATCCCTAGTCTAAGT
Found at i:22385429 original size:197 final size:197
Alignment explanation
Indices: 22385050--22385438 Score: 442
Period size: 197 Copynumber: 2.0 Consensus size: 197
22385040 ACACGTTCTA
* *** * * * * *
22385050 CCTCTCTGGCCGACTGAGTGCCCGCATGCTTGTTTCGTGGGTTGGCTTCGGCATAGGGAGTTCAT
1 CCTCTCCGGCCGACTGAACACCCGCATGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCAT
* * * *
22385115 TCAATGTTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCGGTAG
66 CCAATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGTAG
* ** * * *
22385180 CAGGATCAGCAGCACGCTGGGGGGACCAAGTCGGTCATCGGCTTGCGCATTCTGCCTCTCCGACT
131 CAGGATCAGCAGCACGCAGGGGGGACCAAGTCAATCACCGGCATACGCATTCTGCCTCTCCGACT
22385245 GG
196 GG
22385247 CCTCTCCGGCCGACTGAACACCCGCATGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGGCCGACTGAACACCCGCATGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCAT
* * * * * *
22385312 CC-CTAGTCTAAGTATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCAAGGGTTACGGTA
66 CCAAT-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGTA
* * * * * * *
22385376 GTAGGATC-GATAGTACGCAGGGGGGACC-GGGCTAATCCCCGGCATATGCATTCTGCCTCTCCG
130 GCAGGATCAG-CAGCACGCAGGGGGGACCAAGTC-AATCACCGGCATACGCATTCTGCCTCTCCG
22385439 GCCGACTGAG
Statistics
Matches: 157, Mismatches: 32, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
196 4 0.03
197 153 0.97
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (197 bp):
CCTCTCCGGCCGACTGAACACCCGCATGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCAT
CCAATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGTAG
CAGGATCAGCAGCACGCAGGGGGGACCAAGTCAATCACCGGCATACGCATTCTGCCTCTCCGACT
GG
Found at i:22386890 original size:159 final size:158
Alignment explanation
Indices: 22386449--22386909 Score: 505
Period size: 159 Copynumber: 2.9 Consensus size: 158
22386439 TGGGGATCGG
* * ** * *
22386449 CAGCACGCAGGGG-GGATCGGACCAATCCCCGACTTGTGCATTCTGCCTCTCCGGTCGGCTGAGT
1 CAGCACGCAGGGGAGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGT
* * * **
22386513 GCCCGCCTGCCCGTTTCGTGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAGT
66 GCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATA-CGAGTTCATTCCCTGTCTAAG-ATCAGT
* * *
22386578 C-GGACCGAGGCTTGTGGCAGTGAGACCCA
129 CTGGACCGAGGGTTGCGGCAGTAAGACCCA
* ** * * * *
22386607 CAGCACGCA-GAGAGGGACCAAGCTGATCCCCAACTTGCGCATTATGCCTCTCCGGCTGGCTCAG
1 CAGCACGCAGGGGA-GGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
* * * * * *
22386671 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCAGT
65 TGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCCTGTCTAAGATCAGT
***
22386736 CTGGACCGAGGGTTGCGGCAGTAAGATTGA
129 CTGGACCGAGGGTTGCGGCAGTAAGACCCA
* * *
22386766 CAGCACGCAGGGGAGGACCGGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCAGCCGGCTGAGT
1 CAGCACGCAGGGGAGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGT
* * ** *
22386831 GCCAGGATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCTGTCTAAGATTGGAC
66 GCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCCTGTCTAAGATCAGTC
*
22386896 TAGACCGAGGGTTG
130 TGGACCGAGGGTTG
22386910 TGATAGCAGG
Statistics
Matches: 245, Mismatches: 53, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
157 2 0.01
158 15 0.06
159 225 0.92
160 3 0.01
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (158 bp):
CAGCACGCAGGGGAGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGT
GCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCCTGTCTAAGATCAGTCT
GGACCGAGGGTTGCGGCAGTAAGACCCA
Found at i:22387073 original size:169 final size:171
Alignment explanation
Indices: 22386764--22387148 Score: 411
Period size: 169 Copynumber: 2.3 Consensus size: 171
22386754 CAGTAAGATT
* * * * * * * * *
22386764 GACAGCACGCAG-GGGAGGACC-GGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCAGCCGGCT
1 GACAGCACGTAGAGGG-GGACCAGGTC-GATCCCCGACTTGCACATTTTTCATCTCCGGTCAGCT
* * * * * * * **
22386827 GAGTGCCAGGATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCTGTCTAAGATT
64 GAGCGCCCGTACGCTCGTTTCCTGGGTGGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGACC
* * *
22386892 GGACTAGACCGAGGGTTGTGATAGCAGGACC-AAAGCAGGATT
129 AGACCAGACCGAGGGTTGTGATAGCAGGACCGAAAGCAGGATC
* *
22386934 GGCAGCACGTAG-GGGGGACCAGGTCGATCCCCGACTTGCGCATTTTTCATCTCCGGTCAGCTGA
1 GACAGCACGTAGAGGGGGACCAGGTCGATCCCCGACTTGCACATTTTTCATCTCCGGTCAGCTGA
* * *
22386998 GCGCCCGTACGCTCGTTTCCTGGGTGGGGTTAGGCATACAGAGTTTATTCCATGTCTAAGCCCCA
66 GCGCCCGTACGCTCGTTTCCTGGGTGGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG-ACCA
* * ** *
22387063 G-CCGGACCGAGGGTTGTGGTAGCAGGACCGGTAGCGGGATC
130 GACCAGACCGAGGGTTGTGATAGCAGGACCGAAAGCAGGATC
* *
22387104 GACAGCACGTAGAGGGGGACCTGGTTGATCCCCGACTTGCACATT
1 GACAGCACGTAGAGGGGGACCAGGTCGATCCCCGACTTGCACATT
22387149 ATGCCTCTCT
Statistics
Matches: 176, Mismatches: 35, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
169 112 0.64
170 35 0.20
171 29 0.16
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.22
Consensus pattern (171 bp):
GACAGCACGTAGAGGGGGACCAGGTCGATCCCCGACTTGCACATTTTTCATCTCCGGTCAGCTGA
GCGCCCGTACGCTCGTTTCCTGGGTGGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGACCAG
ACCAGACCGAGGGTTGTGATAGCAGGACCGAAAGCAGGATC
Found at i:22387245 original size:26 final size:26
Alignment explanation
Indices: 22387215--22387267 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22387205 GTTGACTTAG
*
22387215 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
22387241 GCATATAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22387267 G
1 G
22387268 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22387548 original size:159 final size:159
Alignment explanation
Indices: 22387314--22387744 Score: 386
Period size: 159 Copynumber: 2.7 Consensus size: 159
22387304 TAGCACGCAA
* * * * * * * * * * ** *
22387314 GGGGACCGGGCCAATCCTCGACTTGCGTATTCTGCCTCTCTGGCTGGCTGAGTGCCCGCACGCTC
1 GGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCCCTGGCCGACTCAGCACCCGCAAGCTC
* * *
22387379 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAG-TCGGACCGAGGG
66 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG-CTAAGCACCAGAACGGACCGAGGG
** * *
22387443 TTGTGGCAGCGGGACCGATAGTACACAGAG
130 TTGTGGCAGCAAGACCGACAGCACACAGAG
* * * *
22387473 GGGGACCAGGTCGATCCCCGTCTTGCGCATTATGCCT-CTTCGGCC-AGCTCAGCACCCGTAAGC
1 GGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCCCT-GGCCGA-CTCAGCACCCGCAAGC
* * * * * *
22387536 TCGTTTCATGGGTTGACTTATGCATACGGAGTTTATTCCCAGTG-TAAG-ATCGGAACGGACTGA
64 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCA-TGCTAAGCACCAGAACGGACCGA
* *
22387599 GGGTTGTGGCAGCAAGATCGACAGCACACAGGG
127 GGGTTGTGGCAGCAAGACCGACAGCACACAGAG
** * * * * * *
22387632 GGGGACCAGGCCTCTCTCCGGCTTGCGCATTTTGCCTCCCTGGCCGACTGAGCGCCTGCACGCTC
1 GGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCCCTGGCCGACTCAGCACCCGCAAGCTC
* * *
22387697 GTTCCGTGGGTTGGCTTAGGCATACGGATTTCATTCCATGTCTAAGCA
66 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG-CTAAGCA
22387745 TACGGAGTTC
Statistics
Matches: 213, Mismatches: 49, Indels: 19
0.76 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 6 0.03
159 196 0.92
160 7 0.03
161 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
GGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCCCTGGCCGACTCAGCACCCGCAAGCTC
GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCTAAGCACCAGAACGGACCGAGGGT
TGTGGCAGCAAGACCGACAGCACACAGAG
Found at i:22387755 original size:26 final size:26
Alignment explanation
Indices: 22387716--22387768 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22387706 GTTGGCTTAG
*
22387716 GCATACGGATTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22387742 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22387768 G
1 G
22387769 ATTTTGACCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22388630 original size:26 final size:26
Alignment explanation
Indices: 22388594--22388646 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22388584 GTTGGCGTAG
22388594 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22388620 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22388646 G
1 G
22388647 ATCAGAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22388971 original size:159 final size:158
Alignment explanation
Indices: 22388701--22389163 Score: 482
Period size: 157 Copynumber: 2.9 Consensus size: 158
22388691 AGACCGAACT
* * * * *
22388701 GAGGGTTGTGGCAGCAAGATCGACAGCACACAGGGGGGACC-AGGCCTCTCTCCGGCTTGCGCAT
1 GAGGGTTGTGGCAGCAAGATCGACAGCACGCAGGGGGGACCGA-GCCTATCACCGACTTGTGCAT
* * * * * *
22388765 TTTGCCTCTCCGGCCGGCTGAGCACCCGCACGCCCGTTTTGTAGGTTGGCTTAGGCATAGGGAGT
65 TATGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTGGCTTAAGCATACGGAGT
* *
22388830 TCATTCCATGTCTAAGCCCCAG-CCAGATC
130 TCATTCCA-GTCTAAGCACCAGACCAGACC
* * * * * *
22388859 GAGGGTTGTGGCAGTAGGACCGGCAGCACGCAGAAGGGGACCGAGCCTATCCCCGACTTGTGCAT
1 GAGGGTTGTGGCAGCAAGATCGACAGCACGCAG-GGGGGACCGAGCCTATCACCGACTTGTGCAT
* * * * * * *
22388924 TATGCCTCTTCGACCGACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGT
65 TATGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTGGCTTAAGCATACGGAGT
* *** *
22388989 TCATTCCAATCTAAG-ATTGGACCGGACC
130 TCATTCCAGTCTAAGCACCAGACCAGACC
** * * * * * *
22389017 GAGGGTTGCAGTAACAAGATCGAAAGTACGCAGGGGGGACCGAGTCGATCACCGACTTGTGCATT
1 GAGGGTTGTGGCAGCAAGATCGACAGCACGCAGGGGGGACCGAGCCTATCACCGACTTGTGCATT
* * * *
22389082 CTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTAAGTTAGCTTAAGCATACGGAGTT
66 ATGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTGGCTTAAGCATACGGAGTT
22389147 CATTCCACGTCTAAGCA
131 CATTCCA-GTCTAAGCA
22389164 TACGGAGCTC
Statistics
Matches: 245, Mismatches: 55, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
157 90 0.37
158 68 0.28
159 86 0.35
160 1 0.00
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (158 bp):
GAGGGTTGTGGCAGCAAGATCGACAGCACGCAGGGGGGACCGAGCCTATCACCGACTTGTGCATT
ATGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTGGCTTAAGCATACGGAGTT
CATTCCAGTCTAAGCACCAGACCAGACC
Found at i:22389168 original size:26 final size:26
Alignment explanation
Indices: 22389132--22389187 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
22389122 TAAGTTAGCT
*
22389132 TAAGCATACGGAGTTCATT-CCACGTC
1 TAAGCATACGGAGCTCATTCCCA-GTC
22389158 TAAGCATACGGAGCTCATTCCCAGTC
1 TAAGCATACGGAGCTCATTCCCAGTC
22389184 TAAG
1 TAAG
22389188 ATTTTGAGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGCTCATTCCCAGTC
Found at i:22389434 original size:130 final size:131
Alignment explanation
Indices: 22389201--22389470 Score: 400
Period size: 130 Copynumber: 2.1 Consensus size: 131
22389191 TTGAGCCACG
22389201 GTGCACATGCTGGGCTCAGGCATGTGCTGGTGCAGCATTTTTTTTGCCCGGGGCACCATCGCCAG
1 GTGCACATGCTGGGCTCAGGCATGTGCTGGTGCAGCATTTTTTTTGCCCGGGGCACCATCGCCAG
* * * **
22389266 AGCATCGCCGGAGAGCCTAACCGGTGGCATTGGGGGTTCCGGTGATTGGGG-GGTCCGA-GGGGT
66 AGCATCACCGGAGAGCCTAACAGGCGGCATTGGGGGTTCCGACGATTGGGGAGG-CCGAGGGGGT
22389329 GT
130 GT
** * * * *
22389331 GTGCACATGCTGGGCTTGGGCTTGTGCTGGTGCCGTATTTTTTTTGCCCGGGGCACCATCGCCGG
1 GTGCACATGCTGGGCTCAGGCATGTGCTGGTGCAGCATTTTTTTTGCCCGGGGCACCATCGCCAG
*
22389396 AGCATCACTGGAGAGCCTAACAGGCGGCATTGGGGGTTCCGACGATTGGGGAGGCCGAGGGGGTG
66 AGCATCACCGGAGAGCCTAACAGGCGGCATTGGGGGTTCCGACGATTGGGGAGGCCGAGGGGGTG
22389461 T
131 T
*
22389462 GCGCACATG
1 GTGCACATG
22389471 ATGTGCGATG
Statistics
Matches: 125, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
130 108 0.86
131 17 0.14
ACGTcount: A:0.14, C:0.24, G:0.39, T:0.23
Consensus pattern (131 bp):
GTGCACATGCTGGGCTCAGGCATGTGCTGGTGCAGCATTTTTTTTGCCCGGGGCACCATCGCCAG
AGCATCACCGGAGAGCCTAACAGGCGGCATTGGGGGTTCCGACGATTGGGGAGGCCGAGGGGGTG
T
Found at i:22390018 original size:26 final size:26
Alignment explanation
Indices: 22389989--22390040 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22389979 TGACCTAGGC
*
22389989 ATACGGAGTTCA-TCCCTAGTCTAAGA
1 ATACGAAGTTCATTCCC-AGTCTAAGA
22390015 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
22390041 TTGAACTGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGA
Found at i:22390341 original size:159 final size:159
Alignment explanation
Indices: 22390152--22390516 Score: 403
Period size: 159 Copynumber: 2.3 Consensus size: 159
22390142 TGCACGCCCG
* * *
22390152 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGATCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGT
* * ** ** *
22390216 TGTGGCAGCAGGACCGGCAGCATGCAGAGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCC
66 TGTGGCAGCAAGACCGACAGCACACAG-GGGGGACCGGGCCAATCCCCGACTTGCCCATTATGCC
* *
22390281 TATCCGATCGGCTCAGCGCCCGTACGCTCA
130 TATCCGACCGACTCAGCGCCCGTACGCTCA
* * * * *
22390311 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTTTTCA-GTCTAAG-ATCGGACCGGACCGAGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCA--TTCCATGTCTAAGCACCAGACCGGACCGAGG
** * * * *
22390374 GTTGTGGCAGCAAGATTGATAGCACACAGGGGGGACCGGGCCAATCCTCGGCTTGCCCATTCTGC
64 GTTGTGGCAGCAAGACCGACAGCACACAGGGGGGACCGGGCCAATCCCCGACTTGCCCATTATGC
* * * * **
22390439 CTCTCTGGCCGACTGAGCGCCCGTACGCTTG
129 CTATCCGACCGACTCAGCGCCCGTACGCTCA
* *
22390470 TTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
22390517 TACGGAGTTC
Statistics
Matches: 167, Mismatches: 34, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
157 4 0.02
158 6 0.04
159 114 0.68
160 39 0.23
161 4 0.02
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGT
TGTGGCAGCAAGACCGACAGCACACAGGGGGGACCGGGCCAATCCCCGACTTGCCCATTATGCCT
ATCCGACCGACTCAGCGCCCGTACGCTCA
Found at i:22390753 original size:12 final size:12
Alignment explanation
Indices: 22390736--22390761 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22390726 GTTGTGTTAA
22390736 CAGGATCGACAG
1 CAGGATCGACAG
22390748 CAGGATCGACAG
1 CAGGATCGACAG
22390760 CA
1 CA
22390762 TGTAGAGAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.27, G:0.31, T:0.08
Consensus pattern (12 bp):
CAGGATCGACAG
Found at i:22391231 original size:158 final size:157
Alignment explanation
Indices: 22390879--22391273 Score: 386
Period size: 158 Copynumber: 2.5 Consensus size: 157
22390869 CCCAGTCTAA
* ** * * *
22390879 GCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGAATCGAGGGTTGAGGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCCGGTCGGACCGAGGGTTGAGGCAGCAGGACCGACA
* * * * **
22390944 GCATGCAGGGGGGACCGAGCTGATCCCCGACTTGTGCATTCTACCTCTCCGGCCGACTGAGTGCC
65 GCAAGCAGGGGGGACCGAGCTGATCCCCGACTTGCGCATTATACCTCTCCGGCCGACTCAACGCC
* * *
22391009 CGCACGCTCCTTTTGTGGGTTAGCTTAG
130 CGCACACTCCTTTCGTGGGTTAACTTAG
* * ** * *
22391037 GCATACGGAGCTCATTACATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGC-GGACCGACA
1 GCATACGGAGTTCATTCCA-GTCTAAGATCCGGTCGGACCGAGGGTTGAGGCAGCAGGACCGACA
* * * * * *
22391101 GCAAGCAGAGGGGGATCGAG-TCGATCCCCGGCTTGCGCATTATGCCTCTCTGGCTGGCTCAACG
65 GCAAGCAG-GGGGGACCGAGCT-GATCCCCGACTTGCGCATTATACCTCTCCGGCCGACTCAACG
* *
22391165 CCCGTACACTCGTTTCGTGGGTTAACTTAG
128 CCCGCACACTCCTTTCGTGGGTTAACTTAG
* * * * * *
22391195 GCATACGGAGTTCATTCCTAGTCTAAGATCGGGTCGGATCAAGGG-T--CGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCCGGTCGGACCGAGGGTTGAGGCAGCAGGACCGACA
*
22391257 GCACGCAGGGGGGACCG
65 GCAAGCAGGGGGGACCG
22391274 GGCCAATCCT
Statistics
Matches: 190, Mismatches: 42, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
155 12 0.06
156 15 0.08
157 19 0.10
158 143 0.75
159 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.21
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCCGGTCGGACCGAGGGTTGAGGCAGCAGGACCGACAG
CAAGCAGGGGGGACCGAGCTGATCCCCGACTTGCGCATTATACCTCTCCGGCCGACTCAACGCCC
GCACACTCCTTTCGTGGGTTAACTTAG
Found at i:22391387 original size:26 final size:26
Alignment explanation
Indices: 22391351--22391402 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
22391341 TTGGCTTAGC
*
22391351 CATACAGAGTTCATTCCATGTCTAAG
1 CATACAGAGTTCATTCCAAGTCTAAG
*
22391377 CATACGGAGTTCATTCCAAGTCTAAG
1 CATACAGAGTTCATTCCAAGTCTAAG
22391403 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCAAGTCTAAG
Found at i:22391731 original size:26 final size:26
Alignment explanation
Indices: 22391702--22391754 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22391692 GTTGACTTAG
*
22391702 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22391728 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22391754 G
1 G
22391755 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22391820 original size:849 final size:854
Alignment explanation
Indices: 22389962--22392229 Score: 2498
Period size: 849 Copynumber: 2.6 Consensus size: 854
22389952 GAACGCCCGT
* * * * *
22389962 ACGCTCGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATCCCTAGTCTAAGAATACGAAGTTCA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
** * * * *
22390027 TTCCCAGTCTAAGATTGAACTGGATCGAGGGTTGCGGTAGTAGGATCGACAGCACGTAGGGGGGA
66 TTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCAGCAGCAGGATCGACAGCACGTAGGGGGGA
* * ** * * * *
22390092 CCGAGTCGATCCTCGGC-TGCACATTCTGCCTCTCTGGCTGGCTAAGCCCCTGCACGCCCGTTTC
131 CCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGTCCC-GCACGCCCGTTTC
* *
22390156 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGG
195 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGG
* * * *
22390221 CAGCAGGACCGGCAGCATGCAGAGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTATC-
260 CAGCAGGACCGGCAGCAAGCAGAGGGGGATC-GGCCGATCCCCGACTTGCGCATTATGCCTCTCT
* * * **
22390285 CGATCGGCTCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTTTTCA
324 AGCT-GGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCT-A
* * * * * * * *
22390350 GTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGATTGATAGCACACAGGGGGGACCGGGC
387 GTCTAAGATCGGATCGGATC-AAGG--GTCGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGC
* * * * * * * * *
22390415 CAATCCTCGGCTTGCCCATTCTGCCTCTCTGGCCGACTGAGCGCCCGTACGCTTGTTTTGTGGGT
449 CAATCCTCGGCTTACGCATTCTGCCTCTCCGGCTGGCTGAGTGCCCGCATGCTCGTTTTGTGGGT
* *
22390480 TGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACGGAGTTCATACCCAATCTAAGATTG
514 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATACCCAATCTAAGATCG
* * * **
22390545 GACCGGACCGAGGGTTGCTACCACAGGACCAGTAGCAGGATCGACAGCATGCGGGGGGACCGGTT
579 GACCGGACCGAAGGTTGCTACCACAGGACCAGCAGCAGGATCGACAGCACGAAGGGGGACCGGTT
* * * *
22390610 CGATCCCCAGCTTACGCATTCTACCTTTTCGACCCACTAAGCACCTACACGCTTGTTTTATAGGT
644 CGATCCCCAGCTTACGCATTCTACCTCTCCGACCCACTAAGCACCCACACGCTTGTTCTATAGGT
* * ** * *
22390675 GGCTTAGGCATACAGAGTTCATTCCATGTCTACGCCCCAGCCGGACCGAAGGTTGTGTTAACAGG
709 GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGAAAAGAAGGTTATGATAACAGG
* * *
22390740 ATCGACAGCAGGATCGACAGCATGTAGAGAGGGATCGGGCTGATCCTCGGCTTACGTAATATTCC
774 ATCGACAGCAGGATCGACAGCACGCAGAGAGGGATC--GCT-ATCCTC-GC-TAC-T-ATATGCC
* * * *
22390805 TCTCCGATCGGCTGAGCGCTCGT
832 TCTCCGACCGACTGACCGCTCGC
* ** *
22390828 ACGCTTGTTTTATGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
** * * *
22390893 TTCCCAGTCTAAGATCTGACCGAATCGAGGGTTG-AGGCAGCAGGATCGACAGCATGCAGGGGGG
66 TTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCA-GCAGCAGGATCGACAGCACGTAGGGGGG
* * * *
22390957 ACCGAGCTGATCCCCGACTTGTGCATTCTACCTCTCCGGCCGACTGAGTGCCCGCACGCTCC-TT
130 ACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGT-CCCGCACGC-CCGTT
* * * * *
22391021 TTGTGGGTTAGCTTAGGCATACGGAGCTCATTACATGTCTAAGCCCCAGTCGGACCGAGGGTTGT
193 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGT
* * *
22391086 GGCAGC-GGACCGACAGCAAGCAGAGGGGGATCGAGTCGATCCCCGGCTTGCGCATTATGCCTCT
258 GGCAGCAGGACCGGCAGCAAGCAGAGGGGGATCG-GCCGATCCCCGACTTGCGCATTATGCCTCT
* * * * *
22391150 CTGGCTGGCTCAACGCCCGTACACTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCTA
322 CTAGCTGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTA
* *
22391215 GTCTAAGATCGGGTCGGATCAAGGGTCGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGCCAA
387 GTCTAAGATCGGATCGGATCAAGGGTCGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCAA
* * * * * *
22391280 TCCTCGGCTTACGTATTTTGCCTCTCCGACTGGCTGAGTACCCGCATGCTGGTTTTATGGGTTGG
452 TCCTCGGCTTACGCATTCTGCCTCTCCGGCTGGCTGAGTGCCCGCATGCTCGTTTTGTGGGTTGG
* * *
22391345 CTTAGCCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT-TCCAAGTCTAAGATCGGA
517 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATACCCAA-TCTAAGATCGGA
* ** * * *
22391409 CCGGACTGAAGGTTGC-GGCAGCAGGACCTGCAGTAGGATCGGCAGCACGTAAGGGGGACCAGG-
581 CCGGACCGAAGGTTGCTACCA-CAGGACCAGCAGCAGGATCGACAGCACG-AAGGGGGACC-GGT
* * * * * * * *
22391472 TCGATTCCCAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCCGCACGCTCATG-TCT-TG
643 TCGATCCCCAGCTTACGCATTCTACCTCTCCGACCCACTAAGCACCCACACGCT--TGTTCTATA
* *
22391535 GGTTGGCTTAGGCATAC-GAAGTTCATTCCATGTCTAAGCCCTAGCCGAAAAGAGGGTTATGATA
706 GG-TGGCTTAGGCATACAG-AGTTCATTCCATGTCTAAGCCCCAGCCGAAAAGAAGGTTATGATA
* * * * * *
22391599 GCAGGA-CTGATAGCGGGATCGATAGCACGCAGAGGGGGA-C-CT-T-GT-GC-A-T-TATGCCT
769 ACAGGATC-GACAGCAGGATCGACAGCACGCAGAGAGGGATCGCTATCCTCGCTACTATATGCCT
*
22391655 CTCCGACCGACTGACCGCTTGC
833 CTCCGACCGACTGACCGCTCGC
*
22391677 ATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
*
22391742 TTCCCAGTCTAAGATCAAACCGGA-CTGAGGGTTGCAGCAGCAGGATCGACAACACGTAGGGGGG
66 TTCCCAGTCTAAGATCAAACCGGATC-GAGGGTTGCAGCAGCAGGATCGACAGCACGTAGGGGGG
* * * **
22391806 ACCGGGCCGATCCCCGGCTTGTGCATTTTGCCTCTTCGATCGGCTGAGCTCCCGCACGCCCGTTT
130 ACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAG-TCCCGCACGCCCGTTT
* * *
22391871 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAGCTC-GACTGAGGG-TGT
194 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGT
* * * * *
22391934 GGTAGCGGGACGGGCAGCGCA-CAGAGGGGGATCGGGCCGATCCCCGACTTGAGCATTATGCCTC
258 GGCAGCAGGACCGGCAGC-AAGCAGAGGGGGATC-GGCCGATCCCCGACTTGCGCATTATGCCTC
* * * * * *
22391998 T-TCAGCCGACTCAGTGCTCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCC
321 TCT-AGCTGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCC
* * * * * * * *
22392062 CAATCTAAGATCAGATCGGATCGAGAGTTACGGTAGCAGGATCGACAGCATGCAGGGGGGACCAG
385 TAGTCTAAGATCGGATCGGATCAAG-GGT-C-GCAGCAGGATCGACAGCACGCAGGGGGGACCGG
* * ** ** * * * *
22392127 GTCGATCCTCGATTTTTGCATTCTGCCTCTCCGGCTTGCCGAGTGCCCGCGTGCTCGTTTCGTGG
447 GCCAATCCTCGGCTTACGCATTCTGCCTCTCCGGCTGGCTGAGTGCCCGCATGCTCGTTTTGTGG
*
22392192 GTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
512 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
22392230 CCCAGTCGGA
Statistics
Matches: 1172, Mismatches: 203, Indels: 68
0.81 0.14 0.05
Matches are distributed among these distances:
848 12 0.01
849 355 0.30
850 8 0.01
851 2 0.00
852 113 0.10
853 1 0.00
855 2 0.00
857 1 0.00
858 1 0.00
860 2 0.00
861 6 0.01
862 177 0.15
863 58 0.05
864 88 0.08
865 21 0.02
866 224 0.19
867 96 0.08
868 5 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (854 bp):
ACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCAGCAGCAGGATCGACAGCACGTAGGGGGGA
CCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGTCCCGCACGCCCGTTTCG
TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGC
AGCAGGACCGGCAGCAAGCAGAGGGGGATCGGCCGATCCCCGACTTGCGCATTATGCCTCTCTAG
CTGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCT
AAGATCGGATCGGATCAAGGGTCGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCAATCCT
CGGCTTACGCATTCTGCCTCTCCGGCTGGCTGAGTGCCCGCATGCTCGTTTTGTGGGTTGGCTTA
GGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATACCCAATCTAAGATCGGACCGGA
CCGAAGGTTGCTACCACAGGACCAGCAGCAGGATCGACAGCACGAAGGGGGACCGGTTCGATCCC
CAGCTTACGCATTCTACCTCTCCGACCCACTAAGCACCCACACGCTTGTTCTATAGGTGGCTTAG
GCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGAAAAGAAGGTTATGATAACAGGATCGACA
GCAGGATCGACAGCACGCAGAGAGGGATCGCTATCCTCGCTACTATATGCCTCTCCGACCGACTG
ACCGCTCGC
Found at i:22392121 original size:158 final size:155
Alignment explanation
Indices: 22391728--22392399 Score: 475
Period size: 158 Copynumber: 4.2 Consensus size: 155
22391718 CCCAGTCTAA
* * * *
22391728 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTT-CGGTAGCAGGATCGACA
* * * * * *
22391793 ACACGTAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTTTGCCTCTTCGATCGGCTGAGCT-C
65 GCACGCAGGGGGGACCGGGCCGATCCCCGACTTGTGCATTATGCCTCTTCG--CCGCTCAG-TGC
* *
22391857 CCGCACGCCCGTTTCATGGGTTGGCTTAG
127 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
22391886 GCATAGGGAGTTCATT-CCATGTCTAAGCCTCAGCTC-GACTGAGGGTGT-GGTAGCGGGA-CGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACTGAGGGT-TCGGTAGCAGGATC-G
* * * * *
22391947 GCAGCGCACAGAGGGGGATCGGGCCGATCCCCGACTTGAGCATTATGCCTCTTCAGCCGACTCAG
62 ACAGCACGCAG-GGGGGACCGGGCCGATCCCCGACTTGTGCATTATGCCTCTTC-GCCG-CTCAG
* * *
22392012 TGCTCGCACGCTCGTTTCGTGGGTTGACTTAT
124 TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
22392044 GCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGA-TCGAGAGTTACGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACT-GAGGGTT-CGGTAGCAGGATCGAC
* * * * * * * * *
22392108 AGCATGCAGGGGGGACCAGGTCGATCCTCGATTTTTGCATTCTGCCTCTCCGGCTTGC-CGAGTG
64 AGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGTGCATTATGCCTCTTC-GC-CGCTC-AGTG
**
22392172 CCCGCGTGCTCGTTTCGTGGGTTGGCTTAG
126 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** *
22392202 GCATATGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCAGAACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACTGAGGG-T-T-----------CGG
* * *
22392265 TAG-AGGGATCAACAGCACGCAGAGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTC
51 TAGCA-GGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCGACTTGTGCATTATGCCTCT-
* * * * *
22392329 TGGCCGGCTAAGCGCCCGCACGCTGGTTTCATGGGTTGAG-TTAG
113 TCGCC-GCTCAGTGCCCGCACGCTCGTTTCGTGGGTTG-GCTTAG
* *
22392373 GCATATGGAGTTCATCCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
22392400 CATACAGAGT
Statistics
Matches: 397, Mismatches: 79, Indels: 63
0.74 0.15 0.12
Matches are distributed among these distances:
156 1 0.00
157 32 0.08
158 220 0.55
159 31 0.08
160 2 0.01
169 1 0.00
170 21 0.05
171 85 0.21
172 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTCGGTAGCAGGATCGACAG
CACGCAGGGGGGACCGGGCCGATCCCCGACTTGTGCATTATGCCTCTTCGCCGCTCAGTGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:22392733 original size:342 final size:346
Alignment explanation
Indices: 22392044--22392770 Score: 921
Period size: 342 Copynumber: 2.1 Consensus size: 346
22392034 GTTGACTTAT
* *
22392044 GCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGAGTTACGGTAGCAGGATCGACA
1 GCATACG-AGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGAGTTACGGCAGCAGGATCGACA
* * * * ** *
22392109 GCATGCAGGGGGGACCAGGTCGATCCTCGATTTTTGCATTCTGCCTCTCCGGCTTGCCGAGTGCC
65 GAACGCAGGGGGGACCAGGCCGATCCCCGATTTACGCATTCTGCCTCTCCGGCTTGCCGAGCGCC
** * * **
22392174 CGCGTGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
130 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGG
*
22392239 ACCGAGGGTTGTGGCAGCAGAACCGGTAGAGGGATCAACAGCACGCAGAGGGGGACCGGGCTGAT
195 ACCAAGGGTTGTGG-AGCAG-A-C----G-GGGATCAACAGCACGCAGAGGGGGACCGGGCTGAT
* ** * *
22392304 CCCCGACTTGCGCATTATGCCTCTCTGGCCGGCTAAGCGCCCGCACGCTGGTTTCATGGGTTGAG
252 CCCAGACTTGCGCATTATGCCTCTCCAGCCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGAC
*
22392369 TTAGGCATATGGAGTTCATCCCCAGTCTAA
317 TTAGGCATACGGAGTTCATCCCCAGTCTAA
*
22392399 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGAGTTACGGCAGCAGGATCGACA
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGAGTTACGGCAGCAGGATCGACA
* *** *
22392464 GAACGTAGGGGGG-TTGGGCCGATCCCCG-TCTTACGCATTCTGCCTCTCCGG-TTGGCTGAGCG
65 GAACGCAGGGGGGACCAGGCCGATCCCCGAT-TTACGCATTCTGCCTCTCCGGCTT-GCCGAGCG
*
22392526 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAACC
128 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACC
* * * *
22392591 GGACCAAGGGTTGT-G-GCAG-C-GGGATCAGCAGCATGTAGAGGGGGATCGGGCTGATCCCTAG
193 GGACCAAGGGTTGTGGAGCAGACGGGGATCAACAGCACGCAGAGGGGGACCGGGCTGATCCC-AG
* * * *
22392652 -CTTGCGCATTATGCCTCTCCAGCCGGCTGAGTGCCTGCGCGCTCGTTTCATGGGTTGACTTAGG
257 ACTTGCGCATTATGCCTCTCCAGCCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
*
22392716 CGTACGGAGTTCATCCCCAGTCTAA
322 CATACGGAGTTCATCCCCAGTCTAA
*
22392741 GCATACGGAGTTCATTCCTAGTCTAAGATC
1 GCATAC-GAGTTCATTCCCAGTCTAAGATC
22392771 GTATCAGACC
Statistics
Matches: 328, Mismatches: 40, Indels: 21
0.84 0.10 0.05
Matches are distributed among these distances:
342 141 0.43
343 1 0.00
348 1 0.00
351 4 0.01
353 4 0.01
354 106 0.32
355 70 0.21
356 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (346 bp):
GCATACGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGAGTTACGGCAGCAGGATCGACAG
AACGCAGGGGGGACCAGGCCGATCCCCGATTTACGCATTCTGCCTCTCCGGCTTGCCGAGCGCCC
GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGA
CCAAGGGTTGTGGAGCAGACGGGGATCAACAGCACGCAGAGGGGGACCGGGCTGATCCCAGACTT
GCGCATTATGCCTCTCCAGCCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
CGGAGTTCATCCCCAGTCTAA
Found at i:22392748 original size:26 final size:26
Alignment explanation
Indices: 22392718--22392767 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
22392708 GACTTAGGCG
22392718 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAGTCTAAGCA
* *
22392744 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
22392768 ATCGTATCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCA
Found at i:22393647 original size:26 final size:26
Alignment explanation
Indices: 22393611--22393663 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22393601 GTTGACTTAG
*
22393611 GCATATGGAGTTCATCCCCAGTATAA
1 GCATACGGAGTTCATCCCCAGTATAA
* *
22393637 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTATAA
22393663 G
1 G
22393664 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTATAA
Found at i:22393925 original size:159 final size:159
Alignment explanation
Indices: 22393637--22394137 Score: 487
Period size: 159 Copynumber: 3.2 Consensus size: 159
22393627 CCCAGTATAA
* * * * * * **
22393637 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTGCGGC-AGCAGGATCGG
1 GCATAAGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGGGTTG-TGCTAGTAGGATCAA
* * * * *
22393700 CAGCACATAG-GGAGGACC-GGACTGATCCCCGGCTTGCGCATTTTGCCTCTTCGGCCAGCTGAG
64 CAGCACATAGAGGGGGACCAGG-CCGATCCCCGGCTTGTGCATTATGCCTCTTCGGCTAGCTGAG
*
22393763 CGCCCGTACGCCCGTTTCATGGGTTGGCTTAG
128 CGCCCGTACGCTCGTTTCATGGGTTGGCTTAG
* * ** * *
22393795 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGCTAGTGGGA-CTGA
1 GCATAAGGAGTTCATTCCATGTCTAAG-ACCAGACCAGACCGAGGGTTGTGCTAGTAGGATC-AA
* * * * *
22393858 CAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTTCGGCTGGCTCAGC
64 CAGCACATAGAGGGGGACCAGGCCGATCCCCGGCTTGTGCATTATGCCTCTTCGGCTAGCTGAGC
* * * *
22393923 GCCCGCT-CGCTCATTTCATGGGTTGACTGAT
129 GCCCG-TACGCTCGTTTCATGGGTTGGCTTAG
*** * * *
22393954 GCATAAGGAGTTCATTCCCA-GTCTAAGATTGGACCAGACTGATGGTTGTGGTAGTAGGATCAAC
1 GCATAAGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGGGTTGTGCTAGTAGGATCAAC
* * * * * *
22394018 AGTACATAGGGGGGGACCAGGCCAATCCCTGGCTTGTGCATTCTGCCTCTCCGGCTAGCTGAGCG
65 AGCACATAGAGGGGGACCAGGCCGATCCCCGGCTTGTGCATTATGCCTCTTCGGCTAGCTGAGCG
*
22394083 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
130 CCCGTACGCTCGTTTCATGGGTTGGCTTAG
* *
22394113 GCATACGAAGTTCATTCCATGTCTA
1 GCATAAGGAGTTCATTCCATGTCTA
22394138 CGCATACGGA
Statistics
Matches: 278, Mismatches: 53, Indels: 23
0.79 0.15 0.06
Matches are distributed among these distances:
157 6 0.02
158 54 0.19
159 211 0.76
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
GCATAAGGAGTTCATTCCATGTCTAAGACCAGACCAGACCGAGGGTTGTGCTAGTAGGATCAACA
GCACATAGAGGGGGACCAGGCCGATCCCCGGCTTGTGCATTATGCCTCTTCGGCTAGCTGAGCGC
CCGTACGCTCGTTTCATGGGTTGGCTTAG
Found at i:22394862 original size:26 final size:26
Alignment explanation
Indices: 22394833--22394885 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22394823 GGGGACTTAG
22394833 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
22394859 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22394885 G
1 G
22394886 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22397263 original size:317 final size:317
Alignment explanation
Indices: 22396739--22397508 Score: 793
Period size: 317 Copynumber: 2.4 Consensus size: 317
22396729 TCCAGCCGGT
* *
22396739 TGAGTGCCCGCACGCCCAATTCATGGGTTGGCTAAGGCATACGGAGTTCATTCCATGTCTAAGCC
1 TGAGTGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
** * *
22396804 CCAACCGGACCGAGGGTTGTGGCAGCGAGACTAGCAACACGTAGAGGGGGACCGGGCCGATCCCC
66 CCAGTCGGA-CGAAGGTTGTGGCAGCGAGACGAGCAACACGTAGAGGGGGACCGGGCCGATCCCC
* * * * **
22396869 AGCTTGCGCATTATACCTCTTCAACCGGGTCAGCACCCGTACGCTCATTTCATGGGTTGACTTTT
130 AGCTTGCACATTATACCTCTCCAACCGGCTCAACACCCGTACGCTCATTTCATGGGTTGACTTAG
* * * *
22396934 GCATACGGAGTTCATTCCTAGTCTAATATCAGACTAGA-TCAAGGGTTGCGACAGCAGGATCGAC
195 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-AAGGGTTGCAACAGCAGGATCGAC
** * * *
22396998 AGCACGTAGG-GGGGACC-GAGCCGATCCCTGGCCTGTGCATTCTGCCTCTCCGA-TCGAC
259 AGCACACAGGAGGGGACCGGA-CCGATCCCCGGCCTGCGCATTCTACCTCTCCGACT-GAC
* * * *
22397056 TGAGTGCCCGCACGCTCGTTTCATGGATTGGCTTAGCCATACGGAGTTCATTCCATGTCTAAGCC
1 TGAGTGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
* * * * * *
22397121 CCAGTCGGACTGAAGGTTGTGGCAGCGGGACCGA-CAGCATGTAGAGGTGGACTGGGCCGATCCT
66 CCAGTCGGAC-GAAGGTTGTGGCAGCGAGA-CGAGCAACACGTAGAGGGGGACCGGGCCGATCCC
** * ** ** * * *
22397185 TGGCTTGCACATTATGCCTCTCCGGCCGGCTCAATGCCCGTATGCTCATTTCGTGGGTTGAGTTA
129 CAGCTTGCACATTATACCTCTCCAACCGGCTCAACACCCGTACGCTCATTTCATGGGTTGACTTA
* * ** * * * * * *
22397250 GGCATATGGAGTTCATTCCCAGTTTAAGATTGGACCGGACTGAGGGTTGCAATAGTAGGATTGAT
194 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGCAACAGCAGGATCGAC
* * * * *
22397315 AGCACACAGGAGGGGACTGGACGGGTCCCCGGCTTGCGCATTCTACCTCTTCGACTGAC
259 AGCACACAGGAGGGGACCGGACCGATCCCCGGCCTGCGCATTCTACCTCTCCGACTGAC
* * * *
22397374 TGAGCT-ACTGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 TGAG-TGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * * *
22397438 CCCAGTCGGACCAAGGGTTGTGGCAG-TAGGACCG-GTAGCACGTAGAAGGGGA-CGGAGCCGAT
65 CCCAGTCGGACGAA-GGTTGTGGCAGCGA-GA-CGAGCAACACGTAGAGGGGGACCGG-GCCGAT
22397500 CCCCAGCTT
126 CCCCAGCTT
22397509 AGGCATACGG
Statistics
Matches: 367, Mismatches: 75, Indels: 21
0.79 0.16 0.05
Matches are distributed among these distances:
316 1 0.00
317 218 0.59
318 144 0.39
319 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (317 bp):
TGAGTGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
CCAGTCGGACGAAGGTTGTGGCAGCGAGACGAGCAACACGTAGAGGGGGACCGGGCCGATCCCCA
GCTTGCACATTATACCTCTCCAACCGGCTCAACACCCGTACGCTCATTTCATGGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGCAACAGCAGGATCGACAG
CACACAGGAGGGGACCGGACCGATCCCCGGCCTGCGCATTCTACCTCTCCGACTGAC
Found at i:22397503 original size:159 final size:157
Alignment explanation
Indices: 22396746--22397508 Score: 499
Period size: 159 Copynumber: 4.8 Consensus size: 157
22396736 GGTTGAGTGC
* * * *
22396746 CCGCACGCCCAATTCATGGGTTGGCTAAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCG
1 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * *
22396811 GACCGAGGGTTGTGGCAGC-GAGA-CTAGCAACACGTAGAGGGGGACCGG-GCCGATCCCCAGCT
66 GACCAAGGGTTGTGGCAGCAG-GACCGA-CAGCACGTAGA-GGGGA-CGGAGCCGATCCCCGGCT
* * ** *
22396873 TGCGCATTATACCTCTTCAACCGGGTCAGCA
127 TGCGCATTATACCTCTCCGACCGACTGAGCA
* * ** ***
22396904 CCCGTACGCTCATTTCATGGGTTGACTTTTGCATACGGAGTTCATTCC-TAGTCTAA-TATCAGA
1 -CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCAG-
** * * * * * * * *
22396967 CTAGATCAAGGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGGACCGAGCCGATCCCTGGCCT
63 CCGGACCAAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGACGGAGCCGATCCCCGGCTT
* * * *
22397032 GTGCATTCTGCCTCTCCGATCGACTGAGTGC-
128 GCGCATTATACCTCTCCGACCGACTGA--GCA
* * * *
22397063 CCGCACGCTCGTTTCATGGATTGGCTTAGCCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCG
1 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * **
22397128 GACTGAA-GGTTGTGGCAGCGGGACCGACAGCATGTAGAGGTGGACTGG-GCCGATCCTTGGCTT
66 GAC-CAAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGG-GGAC-GGAGCCGATCCCCGGCTT
* * * * *
22397191 GCACATTATGCCTCTCCGGCCGGCTCAATGC-
128 GCGCATTATACCTCTCCGACCGACT-GA-GCA
* * * * * ****
22397222 CCGTATGCTCATTTCGTGGGTTGAG-TTAGGCATATGGAGTTCATTCCCA-GTTTAAG-ATTGGA
1 CCGCACGCTCATTTCATGGGTTG-GCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-
** **** * ** * ** * *
22397284 CCGGACTGAGGGTTGCAATAGTAGGATTGATAGCACACAGGAGGGGACTGGA-CGGGTCCCCGGC
63 CCGGACCAAGGGTTGTGGCAGCAGGACCGACAGCACGTA-GAGGGGAC-GGAGCCGATCCCCGGC
* * *
22397348 TTGCGCATTCTACCTCTTCGACTGACTGAGCTA
126 TTGCGCATTATACCTCTCCGACCGACTGAGC-A
* * * * *
22397381 CTGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
1 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* ** *
22397446 GACCAAGGGTTGTGGCAGTAGGACCGGTAGCACGTAGAAGGGGACGGAGCCGATCCCCAGCTT
66 GACCAAGGGTTGTGGCAGCAGGACCGACAGCACGTAG-AGGGGACGGAGCCGATCCCCGGCTT
22397509 AGGCATACGG
Statistics
Matches: 450, Mismatches: 128, Indels: 52
0.71 0.20 0.08
Matches are distributed among these distances:
157 4 0.01
158 124 0.28
159 306 0.68
160 16 0.04
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
GACCAAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGACGGAGCCGATCCCCGGCTTGCG
CATTATACCTCTCCGACCGACTGAGCA
Found at i:22397929 original size:26 final size:26
Alignment explanation
Indices: 22397893--22397945 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22397883 GTTGACTTAG
22397893 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
22397919 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22397945 G
1 G
22397946 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22398387 original size:156 final size:156
Alignment explanation
Indices: 22397919--22398417 Score: 477
Period size: 159 Copynumber: 3.2 Consensus size: 156
22397909 CCCAGTCTAA
* * **
22397919 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * ** * * * * * * *
22397984 GCACGTAGGGGGATCGAGCCAATCCCTAGCTTCCGCATTCTGCCTCTCCTG-TCGGTTGAGTGAC
66 GCACGTAGGGGGCT-GGGCTGATCCCCAGCTTACGCATTATGCCTTTCC-GACCGGTTGAGCGCC
* * *
22398048 CGCATGCTCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCATTTCGTGGGTTGACTTAG
* ** * * ** * *
22398076 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACCGAGGGCTGTGGTAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGA
* * ** * ** * * *
22398139 CAGCATGCAGAAGGGGACCAGG-TCGATCCCCAGCCTGTGCATTATGCCTCTT-CGACAGGCTCA
64 CAGCA--C-GTAGGGGGCTGGGCT-GATCCCCAGCTTACGCATTATGCCT-TTCCGACCGGTTGA
* *
22398202 GGGCCCGCACGCTCATTTCGTGGGTTGACTTAT
124 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* *
22398235 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
*
22398300 GCACGTAGGGGGCTGGGCTGATCCCCATCTTACGCATTATGCCTTTCCGACCGGTTGAGCGCCCG
66 GCACGTAGGGGGCTGGGCTGATCCCCAGCTTACGCATTATGCCTTTCCGACCGGTTGAGCGCCCG
* *
22398365 CACGCTCCTTTCGTGAGTTGACTTAG
131 CACGCTCATTTCGTGGGTTGACTTAG
*
22398391 GCATACGGAGTTCATCCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
22398418 CATATGGAGT
Statistics
Matches: 266, Mismatches: 64, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
155 2 0.01
156 96 0.36
157 50 0.19
158 5 0.02
159 103 0.39
160 10 0.04
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
GCACGTAGGGGGCTGGGCTGATCCCCAGCTTACGCATTATGCCTTTCCGACCGGTTGAGCGCCCG
CACGCTCATTTCGTGGGTTGACTTAG
Found at i:22398441 original size:26 final size:26
Alignment explanation
Indices: 22398391--22398442 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
22398381 GTTGACTTAG
*
22398391 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* **
22398417 GCATATGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
22398443 TATCAGACCG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:22398574 original size:182 final size:182
Alignment explanation
Indices: 22398235--22398587 Score: 467
Period size: 182 Copynumber: 1.9 Consensus size: 182
22398225 GTTGACTTAT
* *
22398235 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * *
22398300 GCACGTAGGGGGCTGGGCTGATCCCCATCTTACGCATTATGCCTTTCCGACCGGTTGAGCGCCCG
66 GCACGTAGGGGGATGGGCTGATCCCCAGCTTACGCATTATGCCTTTCCGACCAGCTGAGCACCCG
* * * *
22398365 CACGCTCCTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
131 CACACACCTTTCATGAGTTGACTTAGGCATAAGGAGTTCATCCCCAGTCTAA
* * * * * *
22398417 GCATATGGAGTTCATTTCCAATCTAATATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
* *
22398482 GCACGT-GGGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTT-CGACCAGCTGAGCACC
66 GCACGTAGGGGGAT-GGGCTGATCCCCAGCTTACGCATTATGCCT-TTCCGACCAGCTGAGCACC
* * * *
22398545 GGCACACACGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCAT
129 CGCACACACCTTTCATGAGTTGACTTAGGCATAAGGAGTTCAT
22398588 TCCATGACTT
Statistics
Matches: 146, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
181 6 0.04
182 138 0.95
183 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (182 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
GCACGTAGGGGGATGGGCTGATCCCCAGCTTACGCATTATGCCTTTCCGACCAGCTGAGCACCCG
CACACACCTTTCATGAGTTGACTTAGGCATAAGGAGTTCATCCCCAGTCTAA
Found at i:22398895 original size:158 final size:156
Alignment explanation
Indices: 22398416--22398916 Score: 428
Period size: 159 Copynumber: 3.2 Consensus size: 156
22398406 CCCCAGTCTA
* * * **
22398416 AGCATATGGAGTTCATTTCCA-ATCTAATATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGA
1 AGCATATGGAGTTCA-TTCCATGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGA
* * *
22398480 TAG--CAC-GTGGGGGATCGGG-CTGATCCCCGGCTTACGCATTCTGCCTCTTCGACCAGCTGAG
65 TAGCACACAGAGGGGGATCGGGTC-GATCCCCGGCTTACGCATTCTGCCTCTTCGTCGA-CTGAG
* * *
22398541 CACCGGCACA-CACGTTTCATGGGTTGGCTT
128 CGCC--CACAGCTCGTTTCGTGGGTTGGCTT
* * * ** * * *
22398571 AGGCATAAGGAGTTCATTCCATGACTTAGCCCCAG-CCGGACTGAAGGTTGTGGCAGTAGGA-CT
1 A-GCATATGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACTGAGGGTTGCGGCAGCAGGATC-
** ** * * * ** *
22398634 GGCAGCACGTAGAGGGGGATCGGGTCGATCCCCGGCTTATGCACTATGCCTCTTCAGTCGGGTCA
63 GATAGCACACAGAGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTTC-GTCGACTGA
* * * * *
22398699 GTGCCCGCACGCTCATTTTGTGGGTTGACTT
127 GCGCCCACA-GCTCGTTTCGTGGGTTGGCTT
*
22398730 ATGCATATGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACTGAGGGTTGCGGCAACAGGATCG
1 A-GCATATGGAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCG
* * * * *
22398794 ATAGCACACAG-GGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTACCTCTCCGGTCGATTGAG
64 ATAGCACACAGAGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTTC-GTCGACTGAG
*
22398858 CGCCCACATGGTCGTTTCGTGGGTTGGCTT
128 CGCCCACA-GCTCGTTTCGTGGGTTGGCTT
22398888 AGCCATATGGAGTTCATTCCATGTCTAAG
1 AG-CATATGGAGTTCATTCCATGTCTAAG
22398917 CATACGGAGT
Statistics
Matches: 264, Mismatches: 66, Indels: 29
0.74 0.18 0.08
Matches are distributed among these distances:
155 7 0.03
156 39 0.15
157 10 0.04
158 92 0.35
159 109 0.41
160 7 0.03
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (156 bp):
AGCATATGGAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGAT
AGCACACAGAGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGTCGACTGAGCGC
CCACAGCTCGTTTCGTGGGTTGGCTT
Found at i:22398940 original size:26 final size:26
Alignment explanation
Indices: 22398891--22398941 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
22398881 TTGGCTTAGC
* *
22398891 CATATGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATATCTAAG
22398917 CATACGGAGTTCATTCCCA-ATCTAA
1 CATACGGAGTTCATT-CCATATCTAA
22398942 AATTTTGAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATATCTAAG
Found at i:22399647 original size:26 final size:26
Alignment explanation
Indices: 22399611--22399663 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22399601 GTTGAATTAG
*
22399611 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
22399637 GCATACGGAGTTTATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
22399663 G
1 G
22399664 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:22399829 original size:26 final size:26
Alignment explanation
Indices: 22399793--22399845 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22399783 GTTGGCTTAG
22399793 GCATATGGAGTTCATTCC-ATGTCTAA
1 GCATATGGAGTTCATTCCTA-GTCTAA
22399819 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCTAGTCTAA
22399845 G
1 G
22399846 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCTAGTCTAA
Found at i:22400801 original size:26 final size:26
Alignment explanation
Indices: 22400762--22400814 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22400752 GTTGGCTTAG
* *
22400762 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGACTTCATTCCCA-GTCTAA
22400788 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
22400814 G
1 G
22400815 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:22401172 original size:25 final size:26
Alignment explanation
Indices: 22401125--22401179 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 26
22401115 TTTGTTGACT
22401125 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
*
22401151 TAAGCATAC-GAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
22401176 TAAG
1 TAAG
22401180 ATTAGACCAG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 19 0.68
26 9 0.32
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:22401779 original size:26 final size:26
Alignment explanation
Indices: 22401742--22401794 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22401732 GTTGACTTAG
*
22401742 GCATACGAAGTTCATTCCTAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
22401768 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAATCTAA
22401794 G
1 G
22401795 ATCTAACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:22402291 original size:158 final size:159
Alignment explanation
Indices: 22401839--22402308 Score: 409
Period size: 159 Copynumber: 3.0 Consensus size: 159
22401829 GGAAGAACGT
* * * * * * ** * *
22401839 AGGGGGATTGGGTCGATCCCCGACTTACGCATTCTGCCTCTCTGACCGACTAAGCGCCCGCATGC
1 AGGGGGATCGGGTAGATCCCCAACTTACACATTATGCCTCTCCGGTCGGCTAAG-GCCCACATGC
* * * * *
22401904 TCATTTCATGGTTTGGCTTAGGCATAGGGAGTTCATGCCATGTCTAAGCCCCAGCTT-GACTGAG
65 TCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCCCCAGATTGGACTGAG
* *
22401968 GGTTGTGGCAG-TGAGACTGGCAGCACGCAG
130 GGTTGTGGCAGCTG-GATTGACAGCACGCAG
* * * * * *
22401998 AGGGGGATCGGGTAGATCCCCGACTTGCGCATTATGCCTTTCCGGTTGGCTCA-GCTCCAGCACT
1 AGGGGGATCGGGTAGATCCCCAACTTACACATTATGCCTCTCCGGTCGGCTAAGGC-CCA-CA-T
* * ** * ** ** *
22402062 -CTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCAGTCC-CAGTCTAAG-ATCAGACCGGACC
63 GCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAC-GTCTAAGCCCCAGATTGGACT
** *
22402124 GAGCATTGTGGCAGCTGGATTGACAGCATGCAG
127 GAGGGTTGTGGCAGCTGGATTGACAGCACGCAG
* * * * *
22402157 -GGGGGA-CTGGGTCGGTCCCTAACTTATACATTTTGCCTCTCCGGTCGGCTAAGTGCCCACATG
1 AGGGGGATC-GGGTAGATCCCCAACTTACACATTATGCCTCTCCGGTCGGCTAAG-GCCCACATG
*
22402220 CTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCACGTCTAAGCCCCAG-TTGGACTGA
64 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCCCCAGATTGGACTGA
* *
22402284 GGGTTGTGGCAGCAGGATCGACAGC
129 GGGTTGTGGCAGCTGGATTGACAGC
22402309 GGGATCGACA
Statistics
Matches: 241, Mismatches: 58, Indels: 25
0.74 0.18 0.08
Matches are distributed among these distances:
157 4 0.02
158 114 0.47
159 118 0.49
160 5 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
AGGGGGATCGGGTAGATCCCCAACTTACACATTATGCCTCTCCGGTCGGCTAAGGCCCACATGCT
CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCCCCAGATTGGACTGAGG
GTTGTGGCAGCTGGATTGACAGCACGCAG
Found at i:22402944 original size:26 final size:26
Alignment explanation
Indices: 22402914--22402966 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22402904 GTTGGCTTAG
22402914 GCATATAGAGTTCATTCCCTA-TCTAA
1 GCATATAGAGTTCATTCCC-AGTCTAA
*
22402940 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
22402966 G
1 G
22402967 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:22403314 original size:26 final size:26
Alignment explanation
Indices: 22403284--22403336 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22403274 GTTGACTTAG
22403284 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
22403310 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22403336 G
1 G
22403337 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22403411 original size:356 final size:349
Alignment explanation
Indices: 22402681--22403652 Score: 852
Period size: 356 Copynumber: 2.7 Consensus size: 349
22402671 GAGGGATCGG
* * * * * * * * **
22402681 GCCGATCCTCGGCTTACGCATTATGCCTCTCCGACTGGCTCAGCGCCTGAACGTTCATTTCGTGG
1 GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGAATGCCCATTTCGTGG
* * ** * * ** * *
22402746 GTTGAG-TTAGGCATACGAAGTTCATTC-CTAGTCTAAGATCGAATCAAACCAAGGGTTGTGGCA
66 GTTG-GCTTAGGCATACGGAGTTCATTCAAT-GTCTAAGCCCCAACCGGACTAAGGGCTGTGGCA
* * * * * *** * * * * ** * *
22402809 GTAGGATCGACAGCACGCAG-GGGGGACTGAACCGGTCCTCGGCATGTGCATTCTGCCTCTTCGA
129 GCAGGACCGGCAGCACCCAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGA
* * ** * * * ** *
22402873 CCTGCTGAATGCCCGTATGCTCATTTCATGGGTTGGCTTAGGCATATAGAGTTCATTCCCTA-TC
194 CCGGCTCAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCCAGTC
* * *
22402937 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGTCTAGAGGGTTGCGGCAGTAGGACC
258 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATAGATC-AGAGGGTT--GGCA--AGGA-C
* *
22403002 AGTAGCAGGATCGACAGCACGCAATGGGGGACCGG
317 A--AGCAGGATCGACAGCACGCAAGGGGGGACCGA
* * * * * *
22403037 GCCGATCCCCGGCTTGCGCATTTTGCCTGTCTGGCTGGCTGAGTGCCCGAATGCTCATTTCGTGG
1 GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGAATGCCCATTTCGTGG
* * *
22403102 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTAAGGGTTGTGGCAGC
66 GTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCCCCAACCGGACTAAGGGCTGTGGCAGC
* *
22403167 AGGACCGGCAGCACCCAGTGGGGGACCGGG-CTGATCCTCGACTTACGCATTATATCTCTCCGGT
131 AGGACCGGCAGCACCCAGAGGGGGACCGGGTC-GATCCCCGACTTACGCA-T-TA---------T
* * *
22403231 CAGCCTCTCTGGCCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
184 --GCCTCTCCGACCGGCTCAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
22403296 CATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTAGATC-GAGGGTT-GC
247 CATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGA-TAGATCAGAGGGTTGGC
** *
22403359 -A-G-C-AGCAGGATCGGTAGTACGC-AGGGGGGACCGA
311 AAGGACAAGCAGGATCGACAGCACGCAAGGGGGGACCGA
* * ** * *
22403393 GCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGTCCGCCTGCCCGTTTCGTTG
1 GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGAATGCCCATTTCGTGG
* * * * *
22403458 GTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCAACTGGACTGAGGGCTGTGGTAGT
66 GTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCCCCAACCGGACTAAGGGCTGTGGCAGC
* * *
22403523 GGGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACC
131 AGGACCGGCAGCACCCAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGACC
* * * *
22403588 GGCTCAGTGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
196 GGCTCAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
22403653 AATCAGACTG
Statistics
Matches: 510, Mismatches: 86, Indels: 53
0.79 0.13 0.08
Matches are distributed among these distances:
343 70 0.14
345 1 0.00
354 2 0.00
355 2 0.00
356 282 0.55
357 38 0.07
358 1 0.00
359 1 0.00
360 1 0.00
362 1 0.00
363 1 0.00
366 2 0.00
368 1 0.00
369 12 0.02
370 91 0.18
371 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (349 bp):
GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGAATGCCCATTTCGTGG
GTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCCCCAACCGGACTAAGGGCTGTGGCAGC
AGGACCGGCAGCACCCAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGACC
GGCTCAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
GCATATGGAGTTCATTCCCAGTCTAAGATCAGATAGATCAGAGGGTTGGCAAGGACAAGCAGGAT
CGACAGCACGCAAGGGGGGACCGA
Found at i:22403833 original size:26 final size:26
Alignment explanation
Indices: 22403783--22403835 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22403773 GTTGGCTTAG
* *
22403783 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAATTCATTCCATATCTAA
22403809 GCATACGGAATTCATTCCCA-ATCTAA
1 GCATACGGAATTCATT-CCATATCTAA
22403835 G
1 G
22403836 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCATATCTAA
Found at i:22404890 original size:159 final size:158
Alignment explanation
Indices: 22404722--22405029 Score: 345
Period size: 159 Copynumber: 1.9 Consensus size: 158
22404712 GCCCCAGCCA
** * * * * * * *
22404722 GACCGAGGGTTGTGGCAACGGGACCTACAGCATGCAGAGGGGGA-CCGGGCTGATCCCTGGCTTG
1 GACCGAGGGTTGCAGCAACAGGACCGACAACACGCAGAGGGGGATCC-GACCGATCCCTGGCTTA
* * * *
22404786 CGCATTATTCCTCTCC-GTTCGGCTCAGCGCCCACACGCTT-GTTTCATGGGTTGACTTAGGCAT
65 CACATTATGCCTCTCCGGCT-GGCTCAGCACCCACACG-TTCGTTTCATGGGTTGACTTA-GCAT
22404849 ACAGAGTTCATTCCCA-GTCTAAGATCGAATCG
127 ACAGAGTTCATT-CCATGTCTAAGATCGAATCG
* ** *
22404881 GACCGAGGGTTGCAGTAGTAGGATCGACAACACGCAGAGGGGGATCCGACCGATCCCTGGCTTAC
1 GACCGAGGGTTGCAGCAACAGGACCGACAACACGCAGAGGGGGATCCGACCGATCCCTGGCTTAC
* * * * *
22404946 ACATTCTGCCTCTCCGGCTGGCTGAGCACCCGCACGTTCGTTTCATGGGTTGGCTTAGCATACGG
66 ACATTATGCCTCTCCGGCTGGCTCAGCACCCACACGTTCGTTTCATGGGTTGACTTAGCATACAG
22405011 AGTTCATTCCATGTCTAAG
131 AGTTCATTCCATGTCTAAG
22405030 CATACGGAGT
Statistics
Matches: 123, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
157 3 0.02
158 24 0.20
159 92 0.75
160 4 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
GACCGAGGGTTGCAGCAACAGGACCGACAACACGCAGAGGGGGATCCGACCGATCCCTGGCTTAC
ACATTATGCCTCTCCGGCTGGCTCAGCACCCACACGTTCGTTTCATGGGTTGACTTAGCATACAG
AGTTCATTCCATGTCTAAGATCGAATCG
Found at i:22405031 original size:26 final size:26
Alignment explanation
Indices: 22405002--22405055 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
22404992 GGGTTGGCTT
22405002 AGCATACGGAGTTCATT-CCATGTCTA
1 AGCATACGGAGTTCATTCCCA-GTCTA
22405028 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACGGAGTTCATTCCCAGTCTA
22405054 AG
1 AG
22405056 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCATACGGAGTTCATTCCCAGTCTA
Found at i:22405327 original size:171 final size:171
Alignment explanation
Indices: 22405029--22405362 Score: 397
Period size: 171 Copynumber: 2.0 Consensus size: 171
22405019 CCATGTCTAA
* * *
22405029 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGTAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTACGACAGCAGGACCAGCA
* * * * * *
22405094 GCAGGATCGGTAGCACGCTTGGGGGGACCGGGTCGATCCCCGGCTTACGAATTCTCCCTCTCCGG
66 GCAGGATCGGCAGCACGCTAGAGGGGACCGGCTCGATCCCCGGCTTACGAATTATCCCTCTCCGA
* *
22405159 CCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGGTTAG
131 CCGACTGAGCGCCCGCACGCACGTTTCATGGGTTGGGTTAG
* ** * **
22405200 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGACTGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCGGACCGAGGGTTACGACAGCAGGACCAG
**** *
22405263 CAGCAGGATCGGCAGCACG-TAGAAGGGGACCGAGCT-GATCCCCGGCTTGTTCATTATGCCTCT
64 CAGCAGGATCGGCAGCACGCTAG-AGGGGACCG-GCTCGATCCCCGGCTTACGAATTATCCCTCT
*
22405326 CCGACCGGCTGAGCGCCCGCACGCACGTTTCATGGGT
127 CCGACCGACTGAGCGCCCGCACGCACGTTTCATGGGT
22405363 AGACTTAAGC
Statistics
Matches: 136, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
170 5 0.04
171 127 0.93
172 4 0.03
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (171 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTACGACAGCAGGACCAGCA
GCAGGATCGGCAGCACGCTAGAGGGGACCGGCTCGATCCCCGGCTTACGAATTATCCCTCTCCGA
CCGACTGAGCGCCCGCACGCACGTTTCATGGGTTGGGTTAG
Found at i:22405397 original size:171 final size:171
Alignment explanation
Indices: 22405062--22405398 Score: 374
Period size: 171 Copynumber: 2.0 Consensus size: 171
22405052 TAAGATCGGA
* * * * *
22405062 CCGGACCGAGGGTTACGACAGTAGGACCAGCAGCAGGATCGGTAGCACGCTTGGGGGGACCGGGT
1 CCGGACCGAGGGTTACGACAGCAGGACCAGCAGCAGGATCGGCAGCACGCTAGAGGGGACCGGCT
* * * *
22405127 CGATCCCCGGCTTACGAATTCTCCCTCTCCGGCCGACTGAGTGCCCGCACGCTCGTTTCATGGGT
66 CGATCCCCGGCTTACGAATTATCCCTCTCCGACCGACTGAGCGCCCGCACGCACGTTTCATGGGT
* ** * ** * *
22405192 TGGGTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
131 AGACTTAAGCATACAAAGGTCATCCCATGTCTAAGCCCCAG
** * **
22405233 CCGGACCGAGGGTTGTGGCAGCAGGACTGGCAGCAGGATCGGCAGCACG-TAGAAGGGGACCGAG
1 CCGGACCGAGGGTTACGACAGCAGGACCAGCAGCAGGATCGGCAGCACGCTAG-AGGGGACCG-G
**** * *
22405297 CT-GATCCCCGGCTTGTTCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCACGTTTCATGG
64 CTCGATCCCCGGCTTACGAATTATCCCTCTCCGACCGACTGAGCGCCCGCACGCACGTTTCATGG
22405361 GTAGACTTAAGCATACAAAGGTCATCCCCA-GTCTAAGC
129 GTAGACTTAAGCATACAAAGGTCAT-CCCATGTCTAAGC
22405399 ATATGGAGTT
Statistics
Matches: 135, Mismatches: 28, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
170 2 0.01
171 128 0.95
172 5 0.04
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (171 bp):
CCGGACCGAGGGTTACGACAGCAGGACCAGCAGCAGGATCGGCAGCACGCTAGAGGGGACCGGCT
CGATCCCCGGCTTACGAATTATCCCTCTCCGACCGACTGAGCGCCCGCACGCACGTTTCATGGGT
AGACTTAAGCATACAAAGGTCATCCCATGTCTAAGCCCCAG
Found at i:22405690 original size:159 final size:159
Alignment explanation
Indices: 22405481--22405901 Score: 454
Period size: 159 Copynumber: 2.6 Consensus size: 159
22405471 GGGGATTGGC
* * * * * * **
22405481 CCGATCCCC-AGCTTGCACATTCTACCTCTCC-GGTCGAGCTGAGCGCCCGCACGCCCGTTTTAT
1 CCGATCCCCGA-CTTACACATTATGCCTCTCCAGG-CGA-CTCAACGCCCGCACGCTCGTTTCGT
* ** ** *
22405544 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTGGACCGAGGGTTGTGGCC
63 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGCAGCA
* *
22405609 GCGGGACCGACAGCACGTAGAGAGGGATCAGG
128 GCAGGACCGACAGCACGTAGAGAGGGACCAGG
* * * * *
22405641 CCGATCCCCGGCTTACGCATTATGCCTCTTC-GATCGGCTCAACGCCCGCACGCTCGTTTCGTGG
1 CCGATCCCCGACTTACACATTATGCCTCTCCAG-GCGACTCAACGCCCGCACGCTCGTTTCGTGG
* * * * *
22405705 GTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGACCGAACCAGACCGAGGGTTGCAGTAG
65 GTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCAGACCGAGGGTTGCAGCAG
* * *
22405769 CAGGATCGACAGCACGTAGAGGGGGACCTGG
129 CAGGACCGACAGCACGTAGAGAGGGACCAGG
* * * * * *
22405800 CTGATCCCCGACTTGCACATTCTGCCTCTCCAGGCGACTGAGCGCCCGCACGCTCGTTTGGTGGG
1 CCGATCCCCGACTTACACATTATGCCTCTCCAGGCGACTCAACGCCCGCACGCTCGTTTCGTGGG
22405865 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
22405902 ATACGGAGTT
Statistics
Matches: 213, Mismatches: 43, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
158 3 0.01
159 179 0.84
160 31 0.15
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.22
Consensus pattern (159 bp):
CCGATCCCCGACTTACACATTATGCCTCTCCAGGCGACTCAACGCCCGCACGCTCGTTTCGTGGG
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGCAGCAGCA
GGACCGACAGCACGTAGAGAGGGACCAGG
Found at i:22405910 original size:26 final size:26
Alignment explanation
Indices: 22405874--22405926 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22405864 GTTGGCTTAG
22405874 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22405900 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22405926 G
1 G
22405927 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22406417 original size:26 final size:26
Alignment explanation
Indices: 22406388--22406440 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22406378 GTTGACTTAG
* *
22406388 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
22406414 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
22406440 G
1 G
22406441 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:22406701 original size:159 final size:159
Alignment explanation
Indices: 22406414--22406914 Score: 552
Period size: 157 Copynumber: 3.2 Consensus size: 159
22406404 CCCAGTCTAA
* * * * * * * *
22406414 GCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGATCGGATCGAGGGTTGCGGTAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGCAGCAGCAGGACCGA
* * * * *
22406477 TAGCACGCAG-GGGGACCG-GACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
65 CAGCACGCAGAGGGGACCGAG-TCAATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGC
*
22406540 GCCCGCACGCCCGTTTCATGGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * *
22406571 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCAGCAGCAGGACCGAC
* * *
22406635 AGCACGCAGAAGGGGATCGAGTCAATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCG
66 AGCACGCAG-AGGGGACCGAGTCAATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCG
* * **
22406700 CCCGCACGCTTGTTTCGTGGGTTCACTTAG
130 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
22406730 GCATATGGAGTTCATTACCA-GTCTAAG-ATCGGATCGGACCGAGGGTTGCAGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGCAGCAGCAGGACCGA
* * * * * * *
22406793 TAGCACGCAGGGGGGACCGGGTCGATCCCC-GCTTGCGCATTTTGCCTCTTCGGCCGGCTGAGCT
65 CAGCACGCAGAGGGGACCGAGTCAATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCG
22406857 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
22406887 GCATACGGAGTTCATTCCATG-CTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
22406915 TATGAAGTTC
Statistics
Matches: 287, Mismatches: 48, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
156 11 0.04
157 126 0.44
158 21 0.07
159 125 0.44
160 4 0.01
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCAGCAGCAGGACCGAC
AGCACGCAGAGGGGACCGAGTCAATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:22406891 original size:157 final size:157
Alignment explanation
Indices: 22406414--22406905 Score: 621
Period size: 159 Copynumber: 3.1 Consensus size: 157
22406404 CCCAGTCTAA
* * *
22406414 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCAGGATCGGTA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGTA
** * *
22406479 GCACGCA-GGGGGACCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
65 GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCC
*
22406543 CGCACGCCCGTTTCATGGGTTGGCTTAG
130 CGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * * *
22406571 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGT
* * * * * *
22406635 AGCACGCAGAAGGGGATCGAGTCAATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCG
64 AGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCG
* * **
22406700 CCCGCACGCTTGTTTCGTGGGTTCACTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
22406730 GCATATGGAGTTCATTACCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCAGGATCGATA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGTA
* * *
22406795 GCACGCAGGGGGGACCGGGTCGATCCCC-GCTTGCGCATTTTGCCTCTTCGGCCGGCTGAGCTCC
65 GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCC
22406859 CGCACGCTCGTTTCATGGGTTGGCTTAG
130 CGCACGCTCGTTTCATGGGTTGGCTTAG
22406887 GCATACGGAGTTCATTCCA
1 GCATACGGAGTTCATTCCA
22406906 TGCTAAGCAT
Statistics
Matches: 278, Mismatches: 51, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
156 6 0.02
157 123 0.44
158 21 0.08
159 125 0.45
160 3 0.01
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGTAG
CACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:22407319 original size:511 final size:511
Alignment explanation
Indices: 22406314--22407661 Score: 1719
Period size: 513 Copynumber: 2.7 Consensus size: 511
22406304 TACCACCCGT
* * * * * *
22406314 TCGATCC-CCGGCTTGCGCATCCTGTCTCTCTGGTTC-GCTGAGCGCCCGCACACTCGTTTCGTG
1 TCGATCCTCC-GCTTACGCATTCTGCCTCTCTGG-CCGGCTGAGCACCCGCACGCTCGTTTCGTG
* * * * *
22406377 GGTTGACTTAGGCATACGGAGTTTATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAATCTAAG
64 GGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
* * *
22406441 ATCAGATCGGATCGAGGGTT-GC-----G----GTAGCAGGATCGGTAGCACGCA-GGGGGACCG
128 ATCGGATCGGACCGAGGGTTGGCAGTAGGACCAGTAGCAGGATCGATAGCACGCAGGGGGGACCG
** * *
22406495 GACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCGTTTCATG
193 GGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCGTG
22406560 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAG
258 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAG
** * * * * *
22406625 CGGGACCGGCAGCACGCAGAAGGGGATCGAGTCAATCCCCGGCTTGCGCATTATGCCTCTCCGAC
323 CAAGACTGGCAGCACGCAGAAGGGGACCGAGCCAATCCCCAGCTTACGCATTATGCCTCTCCGAC
* * * * * *
22406690 CGGCTCAGCGCCCGCACGCTTGTTTCGTGGGTTCACTTAGGCATATGGAGTTCATTACCAGTCTA
388 CGGATCAGAGCCCGCACACTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTACCAATCTA
* * *
22406755 AGATCGGATCGGACCGAGGGTTGCAGCAGCAGGATCGATAGCACGCAGGGGGGACCGGG
453 AGATCGGACCGGACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGGGGGGACCGGG
* * * *
22406814 TCGATCC-CCGCTTGCGCATTTTGCCTCT-TCGGCCGGCTGAGCTCCCGCACGCTCGTTTCATGG
1 TCGATCCTCCGCTTACGCATTCTGCCTCTCT-GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGG
*
22406877 GTTGGCTTAGGCATACGGAGTTCATTCCATG-CTAAGCATATGAAGTTCATTCCCAGTCTAAGAT
65 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
* *
22406941 CGGACCGGACCGAGGGTTGCGACAGTAGGACCAGTAGCAGGATCGACAGCACGCAGGGGGGACCG
130 CGGATCGGACCGAGGGTTG-G-CAGTAGGACCAGTAGCAGGATCGATAGCACGCAGGGGGGACCG
* * * *
22407006 GGTCGATCCTCGGCTTACGCATTCTGCCTCTCTGATCGGCTGAGCACCCGCACGCCCGTTTCGTG
193 GGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCGTG
* ** *
22407071 GGTTGGCTTAGGCATAGGGAGTTCAATCCATGTCTAAGCCCTTGCCGGAACGAGGGTTGTGGCAG
258 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAG
* * *
22407136 CAAGACTGGCAGCACGCAGAAGGGGACC-AGACCGATCCCTAGCTTACGCATTATGCCTTTCCGA
323 CAAGACTGGCAGCACGCAGAAGGGGACCGAG-CCAATCCCCAGCTTACGCATTATGCCTCTCCGA
* * * * * *
22407200 -TGGATCATAGCTCGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCT
387 CCGGATCAGAGCCCGCACACTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTACCAATCT
** *
22407264 AAGATCGGACCGGGTCGAGGGTTGC-GACAGCAAGATCGACAGCACGCAGGGGGGGATCGGG
452 AAGATCGGACCGGACCGAGGGTTGCAG-CAGCAAGATCGACAGCACGCA-GGGGGGACCGGG
* * * * * *
22407325 TCGATCCTCGGCTTATGCGTTCTGGCTCTCTGGCTGGCTGAGCACCCACACGCTCGTTTCGTGGG
1 TCGATCCTCCGCTTACGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
*
22407390 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATA
66 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
* * * * *
22407455 GGATCGGACCGATGGTTGTGGCAGTAGGACCAGCAGCAGGATCGATAGCACGTAGGGGGGACTGA
131 GGATCGGACCGA-GGGT-TGGCAGTAGGACCAGTAGCAGGATCGATAGCACGCAGGGGGGACCGG
* * **
22407520 GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGACCGCCCGCACGCTTGTTTCGTGG
194 GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCGTGG
* * * * *
22407585 GTTGGCTTAGGCATACGAAGTTCATTTCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGCCAGC
259 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGC
22407650 AAGACTGGCAGC
324 AAGACTGGCAGC
22407662 GGGGTCGGCA
Statistics
Matches: 730, Mismatches: 94, Indels: 35
0.85 0.11 0.04
Matches are distributed among these distances:
498 50 0.07
499 67 0.09
500 10 0.01
501 1 0.00
506 1 0.00
509 1 0.00
510 115 0.16
511 196 0.27
512 75 0.10
513 208 0.28
514 4 0.01
515 2 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (511 bp):
TCGATCCTCCGCTTACGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
GGATCGGACCGAGGGTTGGCAGTAGGACCAGTAGCAGGATCGATAGCACGCAGGGGGGACCGGGT
CGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGT
TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAA
GACTGGCAGCACGCAGAAGGGGACCGAGCCAATCCCCAGCTTACGCATTATGCCTCTCCGACCGG
ATCAGAGCCCGCACACTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTACCAATCTAAGA
TCGGACCGGACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGGGGGGACCGGG
Found at i:22407424 original size:159 final size:158
Alignment explanation
Indices: 22406976--22407425 Score: 475
Period size: 158 Copynumber: 2.8 Consensus size: 158
22406966 TAGGACCAGT
*
22406976 AGCAGGATCGACAGCACGCA-GGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCTG
1 AGCAAGATCGACAGCACGCAGGGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCTG
* * * *
22407040 ATCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAATCCATGTC
66 AT-GGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* * * *
22407105 TAAGCCCTTGCCGGAACGAGGGTTGTGGC
130 TAAGACCTGGCCGGAACGAGGGTTGCGAC
* ** * ** * * *
22407134 AGCAAGA-CTGGCAGCACGCAGAAGGGGACCAGACCGATCC-CTAGCTTACGCATTATGCCTTTC
1 AGCAAGATC-GACAGCACGCAGGGGGGGACCGGGTCGATCCTC-GGCTTACGCATTCTGCCTCTC
* * * * *
22407197 CGATGGATCAT-AGCTCGCACA--CTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
64 TGATGG--C-TGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CC
* * **
22407259 A-ATCTAAGATC-GGACCGGGTCGAGGGTTGCGAC
125 ATGTCTAAGACCTGG-CCGGAACGAGGGTTGCGAC
* * * *
22407292 AGCAAGATCGACAGCACGCAGGGGGGGATCGGGTCGATCCTCGGCTTATGCGTTCTGGCTCTCTG
1 AGCAAGATCGACAGCACGCAGGGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCT-
*
22407357 GCTGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
65 GATGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
22407422 TAAG
130 TAAG
22407426 CATACGAAGT
Statistics
Matches: 230, Mismatches: 47, Indels: 29
0.75 0.15 0.09
Matches are distributed among these distances:
156 1 0.00
157 11 0.05
158 123 0.53
159 86 0.37
160 8 0.03
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
AGCAAGATCGACAGCACGCAGGGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCTG
ATGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGACCTGGCCGGAACGAGGGTTGCGAC
Found at i:22407436 original size:26 final size:26
Alignment explanation
Indices: 22407399--22407451 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22407389 GTTGGCTTAG
*
22407399 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
22407425 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22407451 G
1 G
22407452 ATAGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22407810 original size:26 final size:26
Alignment explanation
Indices: 22407779--22407831 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22407769 GTTGACTTAC
22407779 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
22407805 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22407831 G
1 G
22407832 ATCGGAACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22408284 original size:158 final size:158
Alignment explanation
Indices: 22407805--22408306 Score: 548
Period size: 158 Copynumber: 3.2 Consensus size: 158
22407795 CCCAGTCTAA
* * * *
22407805 GCATACGGAGTTTATTCCCA-GTCTAAGATCGGAAC-AAACCAAGGGTTGCGACAGCAGGATCAG
1 GCATACGGAGTTCATTCCCATGTCTAAGATC-G-ACTAGACCGAGGGTTGCGACAGCAGGATCAA
* * * * * * * * *
22407868 CAGCACGTATGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCACTCTGGCCGACTGAGCG
64 CAGCACGCAAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGTG
*
22407933 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * * *
22407963 GCATATGGAGTTCATT-TGATGTCTAAGCACTCG-CTAGATCGAGGGTTGTGGCAGCGGGACCAA
1 GCATACGGAGTTCATTCCCATGTCTAAG-A-TCGACTAGACCGAGGGTTGCGACAGCAGGATCAA
* * * * * *
22408026 CAGCACGCAAAGAGGGACCGGGCCAATCCCCTGCTAGCGCATTATGCCTCTTTGGTCGGCTCAGT
64 CAGCACGC-AAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGT
* * * *
22408091 GCCCGCACGCTTGTTTCGTGGGTTGACTTAT
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
22408122 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCAAC
1 GCATACGGAGTTCATTCCCATGTCTAAGATC-GACTAGACCGAGGGTTGCGACAGCAGGATCAAC
* * * *
22408186 AGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGTGC
65 AGCACGCAAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGTGC
* *
22408251 CCGCACACTCGTTTTATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
22408280 GCATACAGAGTTCA-TCCCATGTCTAAG
1 GCATACGGAGTTCATTCCCATGTCTAAG
22408307 CATATGGAGT
Statistics
Matches: 277, Mismatches: 58, Indels: 18
0.78 0.16 0.05
Matches are distributed among these distances:
157 9 0.03
158 141 0.51
159 124 0.45
160 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCATGTCTAAGATCGACTAGACCGAGGGTTGCGACAGCAGGATCAACA
GCACGCAAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGTGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:22414462 original size:26 final size:26
Alignment explanation
Indices: 22414432--22414484 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22414422 GTTGACTTAG
22414432 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
22414458 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
22414484 G
1 G
22414485 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:22414804 original size:26 final size:26
Alignment explanation
Indices: 22414775--22414827 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22414765 GTTGGCTTAG
22414775 GCATACGAAGTTCA-TTCCATGTCTAA
1 GCATACGAAGTTCATTTCCA-GTCTAA
*
22414801 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTTCCAGTCTAA
22414827 G
1 G
22414828 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTTCCAGTCTAA
Found at i:22415443 original size:26 final size:26
Alignment explanation
Indices: 22415407--22415459 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22415397 GTTGACTTAG
*
22415407 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
22415433 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22415459 G
1 G
22415460 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22415723 original size:159 final size:159
Alignment explanation
Indices: 22415532--22415936 Score: 471
Period size: 159 Copynumber: 2.6 Consensus size: 159
22415522 CCCTGGCATG
* * * * * * *
22415532 CGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGTATGCCCGTTTCATGGGTTGGCTTAGGCATAG
1 CGCATTCTGCCTCTCCGGCCGGCTCAGAGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * **
22415597 GGAGTTCAGTCCATGTCTAAGCCCCA-ACCGGACCGAGGGTTATGGCAGCCGGACCGACAGCACG
66 GGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTATGGCAGCAAGACCGACAGCACG
*
22415661 TAGAGGGGGATCGGG-CGAATCCCCGACTTA
131 TAG-GGGGGACCGGGTCG-ATCCCCGACTTA
* ** * * *
22415691 CGCATTATGCCTCTCCGATCGGCTCAGTGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATAC
1 CGCATTCTGCCTCTCCGGCCGGCTCAGAGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * * * *
22415756 GGAGTTCATTACCA-GTCTAAG-ATCAGACTGGATCGAGGGTTGTGGTAGCAAGATCGACAGCAC
66 GGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTATGGCAGCAAGACCGACAGCAC
*
22415819 GTAGGGGGGACCGGGTCGATCCCCGACTTG
130 GTAGGGGGGACCGGGTCGATCCCCGACTTA
* * *
22415849 CGCATTCTGCCTCTTCGGCCGG--CAGAGCACCTGCACGCTCGTTTCGTGGGTTGGTTTAGGCAT
1 CGCATTCTGCCTCTCCGGCCGGCTCAGAGC-CC-GCATGCTCGTTTCGTGGGTTGGCTTAGGCAT
22415912 ACGGAGTTCATTCCATGTCTAAGCA
64 ACGGAGTTCATTCCATGTCTAAGCA
22415937 TACGGAGTTC
Statistics
Matches: 206, Mismatches: 33, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
156 5 0.02
157 5 0.02
158 87 0.42
159 106 0.51
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
CGCATTCTGCCTCTCCGGCCGGCTCAGAGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTATGGCAGCAAGACCGACAGCACG
TAGGGGGGACCGGGTCGATCCCCGACTTA
Found at i:22415908 original size:158 final size:155
Alignment explanation
Indices: 22415433--22415934 Score: 508
Period size: 158 Copynumber: 3.2 Consensus size: 155
22415423 CCCAGTCTAA
* ** * * **
22415433 GCATACAGAGTTCATTCCCA-GTCTAAGATTGGACTGGACCGAGGGTTGCGACAGCAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
22415497 AGCACGCAGGGGGGATCGAGCCGATCCCTGGCATGCGCATTCTGCCTC-TCTGGCCGGCTGAGCG
65 AGCACGTAGGGGGGATCG-GGCGATCCCCGACTTGCGCATTCTGCCTCTTC-GGCCGGC--AGAG
* * *
22415561 CCCGTATGCCCGTTTCATGGGTTGGCTTAG
126 CCCGCATGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
22415591 GCATAGGGAGTTCAGTCCATGTCTAAGCCCCA-ACCGGACCGAGGGTTATGGCAGCCGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * ** *
22415655 AGCACGTAGAGGGGGATCGGGCGAATCCCCGACTTACGCATTATGCCTCTCCGATCGGCTCAGTG
65 AGCACGTAG-GGGGGATCGGGCG-ATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGG--CAGAG
* *
22415720 CCCGCATGCTCATTTCGTGGGTTGACTTAG
126 CCCGCATGCTCGTTTCGTGGGTTGGCTTAG
* * *
22415750 GCATACGGAGTTCATTACCA-GTCTAAGATCAGACTGGATCGAGGGTTGTGGTAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGAC
*
22415814 AGCACGTAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCAGAGCAC
65 AGCACGTAGGGGGGATCGGG-CGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCAGAGC-C
* *
22415879 CTGCACGCTCGTTTCGTGGGTTGGTTTAG
128 C-GCATGCTCGTTTCGTGGGTTGGCTTAG
22415908 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
22415935 CATACGGAGT
Statistics
Matches: 278, Mismatches: 53, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
156 5 0.02
157 8 0.03
158 142 0.51
159 118 0.42
160 4 0.01
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGTAGGGGGGATCGGGCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCAGAGCCCGC
ATGCTCGTTTCGTGGGTTGGCTTAG
Found at i:22415944 original size:26 final size:26
Alignment explanation
Indices: 22415908--22415960 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22415898 GTTGGTTTAG
22415908 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22415934 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22415960 G
1 G
22415961 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22416430 original size:158 final size:157
Alignment explanation
Indices: 22416001--22416774 Score: 505
Period size: 158 Copynumber: 4.8 Consensus size: 157
22415991 GACCAGTAGT
* * * * * * **
22416001 AGGATCGGTAGCACACAGGGGGGGATTGGGCCGAACCCC-AGCTTGGGCATTCTACATCTCCGAC
1 AGGATCGGTAGCACGCA-GGGGGGATCGGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGGT
* * * * *
22416065 CAGCTGAGTGCCCGCACGCTCATTTCGTGGGTTTG-CTTGGGCATACGGAGTTCATTCCATGTCT
64 CGGCTGAGCGCCCGCACACTCATTTCGTGGG-TTGACTTAGGCATACGGAGTTCATCCCA-GTCT
** * * * *
22416129 AAGCCCCAGA-CGGATCGAGGGTGGTAGCAGGACCGGC
127 AAG-ATCGGATCAGACCGAGGGT--T-GC-GG--CAGC
** * * * * * * ** * *
22416166 AGTTGGATCGACAGCATGCAGAAGGGGACCGGGCTGATCCCTGGCTTATGCCTTATGCCTCTCCG
1 A---GGATCGGTAGCACGCAG-GGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCG
* * * * * * * * *
22416231 ATTGACTGAGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
62 GTCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTC
* * * * *
22416296 TAAGATCGGACCGGATCGAGCGTTGCGGTAGC
126 TAAGATCGGATCAGACCGAGGGTTGCGGCAGC
* * * *
22416328 AGGATCGGTAGCACGTAGGGGGGATCGGGCCAATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCG
1 AGGATCGGTAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCG
* * * * * * * * * * *
22416393 GTTGGGCACCCGCACACCCATTTAGTGGGTTGGCTTAGGCGTAGGGATTTCATTCCATTTCTAAG
66 GCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCA-GTCTAAG
* ** *
22416458 -CCCCAGTCAGACCGAGGGTTGTGGCAGC
130 ATCGGA-TCAGACCGAGGGTTGCGGCAGC
* * * * * * * * *
22416486 GGGACCTGCAGCACGCAGAGGGGGATCGGGCCGATCCCTGACTTACGCATTATGTCTCTTCGG-C
1 AGGATCGGTAGCACGCAG-GGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTC
* * * *
22416550 TGGCTCAGCGCCCGCACTCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGACTA
65 -GGCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTCTA
* * *
22416615 AGATCGGATCAAACCAAGGGTTACGGCAGC
128 AGATCGGATCAGACCGAGGGTTGCGGCAGC
* * * * *
22416645 AAGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGATCG
1 AGGATCGGTAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCG
** * * *
22416710 GCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 GCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCA-GTCTAAG
22416775 CATACGGAGT
Statistics
Matches: 462, Mismatches: 131, Indels: 39
0.73 0.21 0.06
Matches are distributed among these distances:
157 9 0.02
158 201 0.44
159 126 0.27
160 6 0.01
162 3 0.01
164 2 0.00
165 3 0.01
166 1 0.00
167 7 0.02
168 101 0.22
169 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
AGGATCGGTAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCG
GCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGA
TCGGATCAGACCGAGGGTTGCGGCAGC
Found at i:22416683 original size:317 final size:317
Alignment explanation
Indices: 22416003--22416775 Score: 760
Period size: 317 Copynumber: 2.4 Consensus size: 317
22415993 CCAGTAGTAG
* * ** * * *
22416003 GATCGGTAGCACACAGGGGGGGATTGGGCCGAA-CCCC-AGCTTGGGCATTCTACATCTCCGACC
1 GATCGATAGCACGCA-GGGGGGACCGGGCC-AATCCCCGA-CTTGCGCATTCTACCTCTCCGATC
* ** * * * * *
22416066 AGCTGAGTGCCCGCACGCTCATTTCGTGGGTTTGCTTGGGCATACGGAGTTCATTCCATGTCTAA
63 GGCTGAGCACCCGCACACCCATTTAGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * * * *
22416131 GCCCCAGACGGATCGAGGGTGGTAGCAGGACCGGCAGTTGGATC-GACAGCATGCAGAAGGGGAC
128 GCCCCAGTCAGACCGAGGGT--T-G-TGG--CAGC-G--GGACCTG-CAGCACGCAGAAGGGGAC
* * * * * * * *
22416195 CGGGCTGATCCCTGGCTTATGCCTTATGCCTCTCCGATTGACTGAGCACCTGCACGCTCGTTTCA
183 CGGGCCGATCCCTGACTTACGCATTATGCCTCTCCGACTGACTCAGCACCCGCACGCTCATTTCA
* ** * * * *
22416260 TGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGATCGGACCGGATCGAGCGTTGCGGT
248 TGGGTTGACTTAGGCATACAGAGTTCATCCCCAGACTAAGATCGGACCAAACCAAGCGTTACGGC
*
22416325 AGCAG
313 AGCAA
* * * * * * * *
22416330 GATCGGTAGCACGTAGGGGGGATCGGGCCAATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGT
1 GATCGATAGCACGCAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTACCTCTCCGATCGGC
* * * * *
22416395 TGGGCACCCGCACACCCATTTAGTGGGTTGGCTTAGGCGTAGGGATTTCATTCCATTTCTAAGCC
66 TGAGCACCCGCACACCCATTTAGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
* *
22416460 CCAGTCAGACCGAGGGTTGTGGCAGCGGGACCTGCAGCACGCAGAGGGGGATCGGGCCGATCCCT
131 CCAGTCAGACCGAGGGTTGTGGCAGCGGGACCTGCAGCACGCAGAAGGGGACCGGGCCGATCCCT
* * * * * * * *
22416525 GACTTACGCATTATGTCTCTTCGGCTGGCTCAGCGCCCGCACTCTCATTTCGTGGGTTGACTTAT
196 GACTTACGCATTATGCCTCTCCGACTGACTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
* * * *
22416590 GCATACGGAGTTCATTCCCAGACTAAGATCGGATCAAACCAAGGGTTACGGCAGCAA
261 GCATACAGAGTTCATCCCCAGACTAAGATCGGACCAAACCAAGCGTTACGGCAGCAA
*
22416647 GATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGATCGGC
1 GATCGATAGCACGCAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTACCTCTCCGATCGGC
* ** * * *
22416712 TGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 TGAGCACCCGCACACCCATTTAGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
22416776 ATACGGAGTT
Statistics
Matches: 363, Mismatches: 80, Indels: 16
0.79 0.17 0.03
Matches are distributed among these distances:
317 235 0.65
318 1 0.00
319 1 0.00
320 3 0.01
322 2 0.01
323 1 0.00
324 1 0.00
325 2 0.01
326 104 0.29
327 13 0.04
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (317 bp):
GATCGATAGCACGCAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTACCTCTCCGATCGGC
TGAGCACCCGCACACCCATTTAGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
CCAGTCAGACCGAGGGTTGTGGCAGCGGGACCTGCAGCACGCAGAAGGGGACCGGGCCGATCCCT
GACTTACGCATTATGCCTCTCCGACTGACTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
GCATACAGAGTTCATCCCCAGACTAAGATCGGACCAAACCAAGCGTTACGGCAGCAA
Found at i:22416777 original size:26 final size:26
Alignment explanation
Indices: 22416748--22416800 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22416738 GTTGGCTTAG
*
22416748 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCAGTCTCA-GTCTAA
22416774 GCATACGGAGTTCAGTCTCAGTCTAA
1 GCATACGGAGTTCAGTCTCAGTCTAA
22416800 G
1 G
22416801 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCTCAGTCTAA
Found at i:22417839 original size:159 final size:158
Alignment explanation
Indices: 22417689--22417974 Score: 349
Period size: 158 Copynumber: 1.8 Consensus size: 158
22417679 CGAGGGTTGT
* * * * *
22417689 GGCAGCAGGACCTG-CAGCACGCAAAGGGGGACTGGGTCGATCCTCAACTTACGCATTTTGCCTC
1 GGCAGCAAGA-CTGACAGCACG-AAAGGGGGACCGGGCCGATCCTCAACTTACACATTCTGCCTC
* * * *
22417753 TTCGACCGGCTCAGTGCCCGTATGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCC
64 TTCGACCGGCTCAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
22417818 AGAGTAAGATCAGACCGGACCGAAGGTTAC
129 AGAGTAAGATCAGACCGGACCGAAGGTTAC
* * * * * * ** *
22417848 GGTAGTAAGATTGACAGCACGTAGGGGGGACCGGGCCGATCTTCGGCTTGCACATTCTGCCTCTT
1 GGCAGCAAGACTGACAGCACGAAAGGGGGACCGGGCCGATCCTCAACTTACACATTCTGCCTCTT
* * * *
22417913 CGATCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
66 CGACCGGCTCAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
22417975 ATGTCTAAGC
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
158 90 0.87
159 14 0.13
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GGCAGCAAGACTGACAGCACGAAAGGGGGACCGGGCCGATCCTCAACTTACACATTCTGCCTCTT
CGACCGGCTCAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
AGTAAGATCAGACCGGACCGAAGGTTAC
Found at i:22418654 original size:158 final size:158
Alignment explanation
Indices: 22418433--22418743 Score: 389
Period size: 158 Copynumber: 2.0 Consensus size: 158
22418423 GGTAGCACGC
* * * * * * *
22418433 AGGGGGGACCGGTCTGATCCCCGGCTTGCATATTCTGCCTCTCCGGTCGGCTGAGCACTCGCACG
1 AGGGGGGACCGGGCCGATCCCCGACTTGCACATTCTACCTCTCCGGTCGGCTAAGCACCCGCAC-
* * *
22418498 GC-CGTTTTGA-GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGTCCC-AG-CTGGA-
65 GCTCG-TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAG-CCCTAGTC-GGAC
* * *
22418558 TCGAGGGTTGTGGTAGCTGGACCGACAGCACAT
127 T-GAGGGTCGTGGCAGCAGGACCGACAGCACAT
* * *
22418591 AGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGTCGGCTAAGCGCCCGCACG
1 AGGGGGGACCGGGCCGATCCCCGACTTGCACATTCTACCTCTCCGGTCGGCTAAGCACCCGCACG
*
22418656 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTATAAGCCCTAGTCGGACTGAG
66 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGCCCTAGTCGGACTGAG
22418721 GGTCGTGGCAGCAGGACCGACAG
131 GGTCGTGGCAGCAGGACCGACAG
22418744 AGGGATCGAC
Statistics
Matches: 131, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
157 9 0.07
158 120 0.92
159 2 0.02
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.23
Consensus pattern (158 bp):
AGGGGGGACCGGGCCGATCCCCGACTTGCACATTCTACCTCTCCGGTCGGCTAAGCACCCGCACG
CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGCCCTAGTCGGACTGAG
GGTCGTGGCAGCAGGACCGACAGCACAT
Found at i:22418874 original size:26 final size:26
Alignment explanation
Indices: 22418845--22418900 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
22418835 CGGGTTGACT
*
22418845 TAAGCGTACGGAGTTCATCCCCAATC
1 TAAGCATACGGAGTTCATCCCCAATC
* *
22418871 TAAGCATATGGAGTTCATTCCCAATC
1 TAAGCATACGGAGTTCATCCCCAATC
22418897 TAAG
1 TAAG
22418901 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAATC
Found at i:22419203 original size:159 final size:158
Alignment explanation
Indices: 22418969--22419377 Score: 376
Period size: 159 Copynumber: 2.6 Consensus size: 158
22418959 CAGTCCCCAG
* * * * * * * * * **
22418969 CTTACACATTTTGCCTCTTCGGCCGACTGAGCACCCGCACGCCCGTTTTGTGGGTTGGGTTAGGC
1 CTTACGCATTATGCCTCTTTGACCAACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * * ** *
22419034 GTAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGCAGC-GAGACCTACA
66 ATACGGAGTTCATTCCA-GTCTAAGCACCAGACCGGACCGACGGTTGCAGCAGCAG-GACCGACA
* *
22419097 GCACGCAAAGGGGGACCGGATCGAT-CCTCAA
129 ACACGC-AAGGGGGACCGGACCGATCCCT-AA
* *** * * *
22419128 CTTACGGATTATGCCTCTTTGACCGGTTCAGTGCCCGAACGCTCGTTTCGTGGGTTGACTTATGC
1 CTTACGCATTATGCCTCTTTGACCAACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* *
22419193 ATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACCGACGGTTGCAGCAGCAGGATCGACAA
66 ATACGGAGTTCATT-CCAGTCTAAGCACCAGACCGGACCGACGGTTGCAGCAGCAGGACCGACAA
* * *
22419257 CACGCAGGGGGGATCGGGCCGATCCCTAA
130 CACGCAAGGGGGACCGGACCGATCCCTAA
* * * * *
22419286 CTTGCGCATTATGCCTCTTTGGCCAACTGAGCGCCTGCATGCTCGTTTCGTGGGTTGACTTAGGC
1 CTTACGCATTATGCCTCTTTGACCAACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
** *
22419351 ATATAGAGTTCATCCCCAGTCTAAGCA
66 ATACGGAGTTCAT-TCCAGTCTAAGCA
22419378 TACAGAGTTC
Statistics
Matches: 199, Mismatches: 45, Indels: 12
0.78 0.18 0.05
Matches are distributed among these distances:
158 92 0.46
159 103 0.52
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (158 bp):
CTTACGCATTATGCCTCTTTGACCAACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATTCCAGTCTAAGCACCAGACCGGACCGACGGTTGCAGCAGCAGGACCGACAAC
ACGCAAGGGGGACCGGACCGATCCCTAA
Found at i:22419343 original size:158 final size:157
Alignment explanation
Indices: 22418874--22419375 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 157
22418864 CCCAATCTAA
* * * * *
22418874 GCATATGGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTACGGCAGTGGGGTCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG-CGGATCGACA
* * * * * * *
22418939 GCATGCAGGGGGGATCGGGCC-AGTCCCCAGCTTACACATTTTGCCTCTTCGGCCGACTGAGCAC
65 GCACGCAGGGGGGATCGGGCCGA-TCCCTAACTTACGCATTATGCCTCTTTGGCCGACTGAGCGC
* * **
22419003 CCGCACGCCCGTTTTGTGGGTTGGGTTAG
129 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** * * *
22419032 GCGTAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGCAGCGAGACCTA
1 GCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCG-GATCGA
* * ** * * ** *
22419095 CAGCACGCAAAGGGGGACCGGATCGAT-CCTCAACTTACGGATTATGCCTCTTTGACCGGTTCAG
63 CAGCACGC-AGGGGGGATCGGGCCGATCCCT-AACTTACGCATTATGCCTCTTTGGCCGACTGAG
* * *
22419159 TGCCCGAACGCTCGTTTCGTGGGTTGACTTAT
126 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
22419191 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGACGGTTGCAGCAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC-GGATCGACA
* * *
22419256 ACACGCAGGGGGGATCGGGCCGATCCCTAACTTGCGCATTATGCCTCTTTGGCCAACTGAGCGCC
65 GCACGCAGGGGGGATCGGGCCGATCCCTAACTTACGCATTATGCCTCTTTGGCCGACTGAGCGCC
* *
22419321 TGCATGCTCGTTTCGTGGGTTGACTTAG
130 CGCACGCTCGTTTCGTGGGTTGACTTAG
* *
22419349 GCATATAGAGTTCATCCCCAGTCTAAG
1 GCATATGGAGTTCATTCCCAGTCTAAG
22419376 CATACAGAGT
Statistics
Matches: 270, Mismatches: 64, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
157 4 0.01
158 144 0.53
159 117 0.43
160 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCGGATCGACAG
CACGCAGGGGGGATCGGGCCGATCCCTAACTTACGCATTATGCCTCTTTGGCCGACTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:22419378 original size:26 final size:26
Alignment explanation
Indices: 22419349--22419401 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22419339 GTTGACTTAG
*
22419349 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
22419375 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22419401 G
1 G
22419402 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22419393 original size:501 final size:504
Alignment explanation
Indices: 22418300--22419718 Score: 1499
Period size: 501 Copynumber: 2.8 Consensus size: 504
22418290 CTCCGACTGG
* * * * * *
22418300 CTGAGCACCTACACGCTCGTTTAATGGGTTGACTTAGGCATACAAAGCTCATCCCAAATCTAAGC
1 CTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGC
* * * *
22418365 ATACGGAGTTCATTCCCAGTCTAAGATC-GATCTAGACTGAGGGTTGCGAC-GTAGGATCGGTAG
66 ATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAGACCGAGGGTTGCGGCAGTAGGATCGGCAG
* * * * * *
22418428 CACGCAGGGGGGA-CCGGTCTGATCCCCGGCTTGCATATTCTGCCTCTCCGGTCGGCTGAGCACT
130 CACGCAGGGGGGATCGGGTC-GATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGACTGAGCACC
* * * *
22418492 CGCACGGCCGTTTTGAGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGTCCCAGCTGG
194 CGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * * *
22418557 ATCGAGGGTTGTGGTAGCTGGACCGACAGCA--CATAGGGGGGATCGGGCCGATCCCCGACTTGC
259 ATCGAGGGTTGTGGCAGC-GGACCGACAGCACGCA-AAGGGGGA-CCGGCCGAT-CCCGACTTAC
* * ** * * * * *
22418620 GCATTCTACCTCTCCGGTCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
320 GCATTATGCCTCTTTGGTCGG-TTAGTGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * * *
22418685 GAGTTCATT-CTATGTATAAGCCCTAGTCGGACTGAGGGTCGTGGCAGCAGGACCGACAGAGGGA
384 GAGTTCATTCCCA-GTCTAAGACCTAGCCGGACCGACGGTC-TGGCAGC--GA-CGACA-AGGGA
* * ** * ****
22418749 TCGACAAATGCAGAGGGGGACCGGGCTGATCCCCGGCTTACGCATTATGCGTCTCCGGTTGG
443 TCGACAAACGCAGAGGGGGACCGGGCCGATCCCCAACTTACGCATTATGCCTCTCCGGCCAA
* * * * * *
22418811 CTGAGCGCCCGCACACTCGTTTCACGGGTTGACTTAAGCGTACGGAGTTCATCCCCAATCTAAGC
1 CTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGC
* * * * * *
22418876 ATATGGAGTTCATTCCCAATCTAAGATCAGACC-GAACCGAGGGTTACGGCAGTGGGGTCGACAG
66 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGTAGGATCGGCAG
* * * * *
22418940 CATGCAGGGGGGATCGGG-CCAGTCCCCAGCTTACACATTTTGCCTCTTCGGCCGACTGAGCACC
130 CACGCAGGGGGGATCGGGTCGA-TCCCCGGCTTGCACATTCTGCCTCTTCGGCCGACTGAGCACC
* * *
22419004 CGCACGCCCGTTTTGTGGGTTGGGTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAACCGG
194 CGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * * *
22419069 ACCGAGGGTTGTGGCAGCGAGACCTACAGCACGCAAAGGGGGACCGGATCGATCCTCAACTTACG
259 ATCGAGGGTTGTGGCAGCG-GACCGACAGCACGCAAAGGGGGACCGG-CCGATCC-CGACTTACG
* ** *
22419134 GATTATGCCTCTTTGACCGGTTCAGTGCCCGAACGCTCGTTTCGTGGGTTGACTTATGCATACGG
321 CATTATGCCTCTTTGGTCGGTT-AGTGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
22419199 AGTTCATTCCCAGTCTAAGATC-AGACCGGACCGACGGT-T-GCAGC-A-G-C-A-GGATCGACA
385 AGTTCATTCCCAGTCTAAGACCTAG-CCGGACCGACGGTCTGGCAGCGACGACAAGGGATCGACA
* * * **
22419256 ACACGCAG-GGGGGATCGGGCCGATCCCTAACTTGCGCATTATGCCTCTTTGGCCAA
449 A-ACGCAGAGGGGGACCGGGCCGATCCCCAACTTACGCATTATGCCTCTCCGGCCAA
* * * *
22419312 CTGAGCGCCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGC
* * * *
22419377 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTTGCGGCAGTAGGATTGGCAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGC
* * * * * * *
22419442 ACGTAAGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTC-TCTAGCCAACTGAGCGCCC
131 ACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTTC-GGCCGACTGAGCACCC
* * * *
22419506 GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCCAGTCAGA
195 GCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
* * *
22419571 TCGAGGGTTGTGGCAACGGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCTGGCTTACGC
260 TCGAGGGTTGTGGCAGC-GGACCGACAGCACGCAAAGGGGGACC-GGCCGATCCC-GACTTACGC
* * *
22419636 ATTATGCCT-TTCTGGTCGGTGTAGTGCCCGAACGCTCGTTCCGTAGGTTGACTTAGGCATACGA
322 ATTATGCCTCTT-TGGTCGGT-TAGTGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
22419700 AGTTCATTCCCAGTCTAAG
385 AGTTCATTCCCAGTCTAAG
22419719 CATACGAAGT
Statistics
Matches: 751, Mismatches: 135, Indels: 54
0.80 0.14 0.06
Matches are distributed among these distances:
500 5 0.01
501 379 0.50
502 13 0.02
504 1 0.00
505 1 0.00
507 1 0.00
510 6 0.01
511 95 0.13
512 150 0.20
513 96 0.13
514 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (504 bp):
CTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGC
ACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGACTGAGCACCCG
CACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAT
CGAGGGTTGTGGCAGCGGACCGACAGCACGCAAAGGGGGACCGGCCGATCCCGACTTACGCATTA
TGCCTCTTTGGTCGGTTAGTGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGACCTAGCCGGACCGACGGTCTGGCAGCGACGACAAGGGATCGACAAACGCAG
AGGGGGACCGGGCCGATCCCCAACTTACGCATTATGCCTCTCCGGCCAA
Found at i:22419519 original size:184 final size:184
Alignment explanation
Indices: 22419191--22419537 Score: 505
Period size: 184 Copynumber: 1.9 Consensus size: 184
22419181 GTTGACTTAT
* * * *
22419191 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGACGGTTGCAGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTTGCAGCAGCAGGATCGACA
* * *
22419256 ACACGCAGGGGGGATCGGGCCGATCCCTAACTTGCGCATTATGCCTCTTTGGCCAACTGAGCGCC
66 ACACGCAAGGGGGATCGGGCCGATCCCTAACTTGCGCATTATGCCTCTCTAGCCAACTGAGCGCC
* * *
22419321 TGCATGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCTAA
131 CGCACGCCCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCTAA
* * * *
22419375 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTTGCGGCAGTAGGATTGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTTGCAGCAGCAGGATCGACA
* * * ** *
22419440 GCACGTAAGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTAGCCAACTGAGCGCC
66 ACACGCAAGGGGGATCGGGCCGATCCCTAACTTGCGCATTATGCCTCTCTAGCCAACTGAGCGCC
*
22419505 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
131 CGCACGCCCGTTTCGTGGGTTGACTTAGGCATA
22419538 GGGATTTCAT
Statistics
Matches: 142, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
184 142 1.00
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTTGCAGCAGCAGGATCGACA
ACACGCAAGGGGGATCGGGCCGATCCCTAACTTGCGCATTATGCCTCTCTAGCCAACTGAGCGCC
CGCACGCCCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCTAA
Found at i:22419721 original size:26 final size:26
Alignment explanation
Indices: 22419692--22419770 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
22419682 GTTGACTTAG
22419692 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
22419718 GCATACGAAGTTCA-ACCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
22419744 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22419770 G
1 G
22419771 ATCGACCGAC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
25 3 0.06
26 42 0.88
27 3 0.06
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22420519 original size:158 final size:159
Alignment explanation
Indices: 22420225--22420528 Score: 371
Period size: 158 Copynumber: 1.9 Consensus size: 159
22420215 CCGATCGACT
* *
22420225 GAGGGTTGTGGCAGCGGGACCGACAGCACGCGGAGGGGGATCGAGCCGATCCCCAACTTGCGCAT
1 GAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGAGCCGATCCCCAACTTGCGCAT
* * * * * *
22420290 TATGCCTCTCCGATCAGCTTAACGCCCACATGCTCATTTAGTGGGTTGACTTAGGCATACGGAGT
66 TATACCTCTCCGACCAACTGAACGCCCACAGGCTCATTTAGTGGGTTGACTTAGGCATACGAAGT
*
22420355 TCATTCCCA-GTCTAAGATCAAACCAGACC
131 TAATT-CCATGTCTAAGATCAAACCAGACC
* * * * * * *
22420384 GAGGGTTGTGGCAGCAGGATCGACAGCATGCAG-GGGGGATCGGGTCGGTCCCCGACTTTCGCAT
1 GAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGAGCCGATCCCCAACTTGCGCAT
* ** * * *
22420448 TTTACCTCTCCGACCAACTGAGTGCCCGCAGGCTCATTTCA-TGGGTTGGCTTGGGCATACGAAG
66 TATACCTCTCCGACCAACTGAACGCCCACAGGCTCATTT-AGTGGGTTGACTTAGGCATACGAAG
22420512 TTAATTCCATGTCTAAG
130 TTAATTCCATGTCTAAG
22420529 CATACGGAGT
Statistics
Matches: 121, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
157 3 0.02
158 88 0.73
159 30 0.25
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGAGCCGATCCCCAACTTGCGCAT
TATACCTCTCCGACCAACTGAACGCCCACAGGCTCATTTAGTGGGTTGACTTAGGCATACGAAGT
TAATTCCATGTCTAAGATCAAACCAGACC
Found at i:22420916 original size:171 final size:171
Alignment explanation
Indices: 22420597--22420918 Score: 380
Period size: 171 Copynumber: 1.9 Consensus size: 171
22420587 CCAACAGCAG
* * * * * *
22420597 GATCGACAGCACGCTGGGGGGGACCGGGCCGATCCTCGACTTGCGCATTTTGCCTCTCCGACTGG
1 GATCGACAGCACGCAGAGGGGGACCAGGCCGATCCTCGACTTACGCATTATGCCTCTCCGACTCG
* * * ** *
22420662 CTTAGCCCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 ATGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
*
22420727 CCCAGCCAGACCGAGGGTTGTCATAGCAAAATCGGTAACAA
131 ACCAGCCAGACCGAGGGTTGTCATAGCAAAATCGGTAACAA
* * * *
22420768 GATCGACAGCACGCAGAGGGTGACCAGGCTGATCCTCGACTTATGCATTATGCCTCTTCGA-TCG
1 GATCGACAGCACGCAGAGGGGGACCAGGCCGATCCTCGACTTACGCATTATGCCTCTCCGACTCG
* ** *
22420832 ATCGAGCACCCGTACGCTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAT-TCTAA
66 AT-GAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAA
* * *
22420896 G-ATCAGACCGGACTGAGGGTTGT
129 GCACCAG-CCAGACCGAGGGTTGT
22420919 GGCAGCAGGA
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
170 6 0.05
171 114 0.92
172 4 0.03
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (171 bp):
GATCGACAGCACGCAGAGGGGGACCAGGCCGATCCTCGACTTACGCATTATGCCTCTCCGACTCG
ATGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ACCAGCCAGACCGAGGGTTGTCATAGCAAAATCGGTAACAA
Found at i:22421239 original size:526 final size:526
Alignment explanation
Indices: 22420321--22421273 Score: 1279
Period size: 526 Copynumber: 1.8 Consensus size: 526
22420311 ACGCCCACAT
22420321 GCTCATTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGA
1 GCTCATTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGA
* * *
22420386 GGGTTGTGGCAGCAGGATCGACAGCATGCAGGGGGGATCGGGTCGGTCCCCGACTTTCGCATTTT
66 GGGTTGTGGCAGCAGGATCGACAGCATGCAGGGGGGACCGGGCCGGTCCCCGACTTTCGCATTCT
* * *
22420451 ACCTCTCCGACCAACTGAGTGCCCGCAGGCTCATTTCATGGGTTGGCTTGGGCATACGAAGTTAA
131 ACCTCTCCGACCAACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTAA
* ** * *
22420516 TTCCATGTCTAAGCATACGGAGTTCATCCCCAGTCTAAGATTGGATCGAACCAAGGTTTCTGATA
196 TTCCATGTCTAAGCATACGGAGTTCATCCCCAGTCAAAGATCAGACCGAACCAAGGTTGCTGATA
* ** * * * * *
22420581 GCATGACCAACAGCAGGATCGACAGCACGCTGGGGGGGACCGGGCCGATCCTCGACTTGCGCATT
261 GCAGGACCAACAGCAAAATCGACAGCACGCAGGAGGGGACCGAGCCGATCCTCAACTTGCGAATT
* * * * ** *
22420646 TTGCCTCTCCGACTGGCTTAGCCCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTT
326 CTGCCTCTCCGACCGGCTTAACACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTT
22420711 CATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTCATAGCAAAATCGGTAACAAGATCGACA
391 CATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTCATAGCAAAATCGGTAACAAGATCGACA
22420776 GCACGCAGAGGGTGACCAGGCTGATCCTCGACTTATGCATTATGCCTCTTCGATCGATCGAGCAC
456 GCACGCAGAGGGTGACCAGGCTGATCCTCGACTTATGCATTATGCCTCTTCGATCGATCGAGCAC
22420841 CCGTAC
521 CCGTAC
* * * * * *
22420847 GCTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCATTCTAAGATCAGACCGGACTGA
1 GCTCATTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGA
22420912 GGGTTGTGGCAGCAGGATCGACAGCATGCAGGGGGGACCGGGCCGGTCCCC-AGCTTGT-GCATT
66 GGGTTGTGGCAGCAGGATCGACAGCATGCAGGGGGGACCGGGCCGGTCCCCGA-CTT-TCGCATT
* ** *** * ** * *
22420975 CTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATATGGAGTT
129 CTACCTCTCCGACCAACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTT
* * * * * *
22421040 CATTCGATGTCTAAGCATACGGAGTTCATTCCCATTCAAAGATCAGACCGGACCGAGGGTTGC-G
194 AATTCCATGTCTAAGCATACGGAGTTCATCCCCAGTCAAAGATCAGACCGAACC-AAGGTTGCTG
* *
22421104 ACTA-CAGGACCAGCAGCAAAATCGACAGCACGCAGGAGGGGACCGAGCTGATCC-CTAACTTGC
258 A-TAGCAGGACCAACAGCAAAATCGACAGCACGCAGGAGGGGACCGAGCCGATCCTC-AACTTGC
* * * * *
22421167 GAATTCTGCCTTTCCTACCGG-TTGAACACCCGCACGCTCATTTCCTTGGTTGGCTTAGGCATGC
321 GAATTCTGCCTCTCCGACCGGCTT-AACACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAC
** *
22421231 GAAGTTCATTCCATGTCTAAGCCCCAGCTGGATCGAGGGTTGT
385 GAAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGT
22421274 GGCGCAGGAC
Statistics
Matches: 362, Mismatches: 59, Indels: 12
0.84 0.14 0.03
Matches are distributed among these distances:
525 4 0.01
526 349 0.96
527 9 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (526 bp):
GCTCATTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGA
GGGTTGTGGCAGCAGGATCGACAGCATGCAGGGGGGACCGGGCCGGTCCCCGACTTTCGCATTCT
ACCTCTCCGACCAACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTAA
TTCCATGTCTAAGCATACGGAGTTCATCCCCAGTCAAAGATCAGACCGAACCAAGGTTGCTGATA
GCAGGACCAACAGCAAAATCGACAGCACGCAGGAGGGGACCGAGCCGATCCTCAACTTGCGAATT
CTGCCTCTCCGACCGGCTTAACACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTT
CATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTCATAGCAAAATCGGTAACAAGATCGACA
GCACGCAGAGGGTGACCAGGCTGATCCTCGACTTATGCATTATGCCTCTTCGATCGATCGAGCAC
CCGTAC
Found at i:22421795 original size:159 final size:158
Alignment explanation
Indices: 22421433--22421939 Score: 400
Period size: 159 Copynumber: 3.2 Consensus size: 158
22421423 CTCAGTCTAA
* * *
22421433 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCCGTAGCAGGATCGACA
1 GCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCCGCAGCAGGACCGACA
* * * * * *
22421498 GCACGCAGGGGGGATCGAGCCGATCCTCGGCTTGCGGATTCTGCCTCTCCAGTCGACTGAGTGCC
66 GCACACAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAGTCGACTCAGCGCC
* * *
22421563 TGCACGGCCATTTCATGGGTTGGCTTAG
131 CGCACAGCCATTTCATGGGTTGACTTAG
** * ** *
22421591 GCATAG-GGAGTTCATT-CCATGTCTAAGCCCTAG-CTGGATCGAGGGTTGTGGCAGCGGGACCG
1 GCAT-GCGGAGTTCATTCCCA-GTCTAAGATC-AGACCGGATCGAGGGTTGCCGCAGCAGGACCG
* * *
22421653 ATAGTACACAGAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCC-GATCGGCTCA
63 ACAGCACACAG-GGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAG-TCGACTCA
* **** *
22421717 GCGCCCGTACATTTGTTTCGTGGGTTGACTTAG
126 GCGCCCGCACAGCCATTTCATGGGTTGACTTAG
* * * * * * *
22421750 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CTGAGGGTTACGGTAGTAGGATCGAC
1 GCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCCGCAGCAGGACCGAC
* * * * * * * * * *
22421814 AGCATGCA-AGGGGGGACCGGGTCGATCCTCGGCTTACGCATTTTGCCTCT-CTGACTGGCTGAG
65 AGCA--CACAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAGTC-GACTCAG
* *
22421877 CGCCCGCACGCACGCTCGTTTCATGGGTTGGCTTAG
127 CGCCCGCA--CA-GC-CATTTCATGGGTTGACTTAG
* *
22421913 GCATACGAAGTTCATT-CCATGTCTAAG
1 GCATGCGGAGTTCATTCCCA-GTCTAAG
22421940 CATACGGAGT
Statistics
Matches: 275, Mismatches: 56, Indels: 31
0.76 0.15 0.09
Matches are distributed among these distances:
157 3 0.01
158 59 0.21
159 163 0.59
160 5 0.02
161 4 0.01
162 3 0.01
163 38 0.14
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCCGCAGCAGGACCGACA
GCACACAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAGTCGACTCAGCGCC
CGCACAGCCATTTCATGGGTTGACTTAG
Found at i:22421943 original size:26 final size:26
Alignment explanation
Indices: 22421913--22421965 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22421903 GTTGGCTTAG
22421913 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
22421939 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22421965 G
1 G
22421966 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22422784 original size:26 final size:26
Alignment explanation
Indices: 22422755--22422806 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22422745 TTGGCTTAGA
*
22422755 CATACAGAGTTTATT-CCATGTCTAAG
1 CATACAGAGTTCATTCCCA-GTCTAAG
*
22422781 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
22422807 ATCGTACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:22423369 original size:26 final size:26
Alignment explanation
Indices: 22423329--22423381 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22423319 GTTGGCTTAG
22423329 GCATACGGAGCTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
*
22423355 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
22423381 G
1 G
22423382 ATGTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:22430324 original size:196 final size:195
Alignment explanation
Indices: 22429867--22430329 Score: 531
Period size: 195 Copynumber: 2.4 Consensus size: 195
22429857 TGTGCATCCC
* * * * * * *
22429867 GCCTCTCTGGTCGGCTGAGTGCCCACACGTTGGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGATCGGCTGAGCGCCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
* * * * * *
22429932 -TCCTTAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGGCCGGACCGAGGGTTGCAGC
66 TTCCAT-GTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGAACCAAGGGTTACAGC
* * * * * * * * *
22429996 AGCAGGACCAGCAGTAAAATTGGAGCACATAGGGAGGACCGGGTCGATCCCTGGCTTGCACATTC
130 AGCAGGACCAACAGCAAAATCGCAGCACAGAGGGAGGACCGGGCCAATCCCCGGCTTACACATTC
22430061 T
195 T
* * * *
22430062 GCCTCTCCGTTCAGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
1 GCCTCTCCGATCGGCTGAGCGCCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
*
22430127 TTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTCAGATCAGACCGAACCAAGGGTTAC-GAC
66 TTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGAACCAAGGGTTACAG-C
* * ** * *
22430191 AGTAGGACCAATAGCAGGATCGACAGCACGCAGAGGG-GGATCGGGCCAATCCCCGGCTTACTCA
130 AGCAGGACCAACAGCAAAATCG-CAGCA--CAGAGGGAGGACCGGGCCAATCCCCGGCTTACACA
22430255 TTCT
192 TTCT
*
22430259 AG-CTCTCCGATCGGCTGAG-GCCCGCACTTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
1 -GCCTCTCCGATCGGCTGAGCGCCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
22430322 ATTCCATG
65 ATTCCATG
22430330 CGTAAGCCCC
Statistics
Matches: 225, Mismatches: 37, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
194 1 0.00
195 120 0.53
196 57 0.25
197 40 0.18
198 7 0.03
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (195 bp):
GCCTCTCCGATCGGCTGAGCGCCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
TTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGAACCAAGGGTTACAGCA
GCAGGACCAACAGCAAAATCGCAGCACAGAGGGAGGACCGGGCCAATCCCCGGCTTACACATTCT
Found at i:22430538 original size:26 final size:26
Alignment explanation
Indices: 22430493--22430543 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
22430483 GTTGACTTAG
*
22430493 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
22430519 GCATACAGAGTTCA-CTCCCAATCTA
1 GCATACAGAGTTCATC-CCCAATCTA
22430544 CAATCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.31, C:0.31, G:0.14, T:0.24
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:22430788 original size:158 final size:158
Alignment explanation
Indices: 22430584--22431019 Score: 430
Period size: 159 Copynumber: 2.7 Consensus size: 158
22430574 AGGATCGGTA
* * *
22430584 GCACGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGATTGGCTGAGCGCCCA
1 GCAC-AGGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGCCCG
*
22430649 CACGCCCGTTTCATGGGTTCGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCCTAG-CC-GA
65 CACGCTCGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGACCAG-
* **
22430711 ACCGAGGGTTGTGGTAGCGGGACCGACAGCAC
127 ACCGAGGGTTGTGGCAGCAAGACCGACAGCAC
* * * ** * * *
22430743 GCACAGGGGGATCGGGCCGATCCCTGACTTGCGCATTATGCCTCTCCGGCCAGCTCAGCACCCGC
1 GCACAGGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGCCCGC
* * ** ** * *
22430808 ACACTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTGCCA-GTCTAAGATCAGATCAGCC
66 ACGCTCGTTTCATGGGTTG-CTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCAGAC
* *
22430872 CGAGGGTTGTGGCAGTAAGATCGACAGCAC
129 CGAGGGTTGTGGCAGCAAGACCGACAGCAC
* ** * * * * * * * *
22430902 ACAGGGGGGGACCGGGTCGATCCCCGACTTACGCATTCTACCTCTTTGATCGGCTGAGTGACTGC
1 GCACAGGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGCCCGC
* **
22430967 ATGCTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGC
66 ACGCTCGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
22431020 ATACAGAATT
Statistics
Matches: 218, Mismatches: 52, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
157 1 0.00
158 78 0.36
159 134 0.61
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCACAGGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGCCCGC
ACGCTCGTTTCATGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAGACCG
AGGGTTGTGGCAGCAAGACCGACAGCAC
Found at i:22431022 original size:26 final size:26
Alignment explanation
Indices: 22430992--22431044 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
22430982 GTTGGCTTAG
22430992 GCATACA-AAGTTCATT-CCATGTCTAA
1 GCATACAGAA-TTCATTCCCA-GTCTAA
22431018 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
22431044 G
1 G
22431045 ATCGGACCCG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:22431425 original size:26 final size:26
Alignment explanation
Indices: 22431375--22431427 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
22431365 GTTGACTTAG
*
22431375 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
22431401 GCATACAGG-GTTCATTCCC-AATCTAA
1 GCATAC-GGAGTTCA-TCCCTAATCTAA
22431427 G
1 G
22431428 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:22431821 original size:882 final size:878
Alignment explanation
Indices: 22430031--22431928 Score: 2353
Period size: 882 Copynumber: 2.2 Consensus size: 878
22430021 CACATAGGGA
* * * * * *
22430031 GGACCGGGTCGATCCCTGGCTTGCACATTCTGCCTCTCCGTTCAGCTGAGCGCCTGCACGCTCGT
1 GGACCGGCTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCTGCACGCTCGT
*
22430096 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAAT
66 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGT
* ** *
22430161 CTCAGATCAGACCGAACCAAGGGTTACGACAGTAGGACCAATAGCAGGATCGACAGCACGCAGAG
131 CTAAGATCAGACCGAACCAAGGGTTACGACAAAAGGACCAATAGCAGGATCGACAGCAC-CACAG
* * * * *
22430226 GGGGATCGGGCCAATCCCCGGCTTACTCATTCTAGCTCTCCGATCGGCTGAGGCCCGCACTTTCG
195 GGGGATCGGGCCAATCCCCGGCTTACGCATTCTAGCTCTCCGATCGACTAAGGCCCGCACCTTCA
22430291 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCGTAAGCCCCAACCGAACCGAGGGTT
260 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCGTAAGCCCCAACCGAACCGAGGGTT
* * * * * *
22430356 GTTACAGTAGGACTGGTAGCTAGATCGATAGCACACAGAAGGGGATCGGGCTGATCCTCCGCTTG
325 GTGACAGCAGGACCGGTAGCGAGATCGATAGCACACAGAAGGGGACCGGGCTGATCCTCAGCTTG
* * * * * * **
22430421 TATATTATGCCTCTTTGGCCGGCCTCTCTGGACGGTTGAGCACCTGCTTGCTCATTTCGTGGGTT
390 CACATTATGCCTCTTCGGCCGGCCTCTCTGGACGGCTAAGCACCCGCACGCTCATTTCGTGGGTT
*
22430486 GACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCACTCCCAATCTACAATCGG
455 GACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCACTCCCAATCTACAATCGA
** ** * *
22430551 ACCTTACCAAGGGTTACGGTAGCAGGATCGGTAGCACGAGGGGGACCGGGCCGATCCCTGGCTTG
520 ACCGGACCAAGGGTTACGGTAGCAGGATCGACAGCACGAGGGGGACCAGGCCGATCCCTGGCTTA
* * * *
22430616 CGCATTCTGCCTCTCTGATTGGCTGAGCGCCCACACGCCCGTTTCATGGGTTCGCTTAGGCATAG
585 CGCATTCCGCCTCTCCGATAGGCTGAGCGCCCACACGCCCATTTCATGGGTTCGCTTAGGCATAG
* * * *
22430681 GAGTTCATTCCATGTCTAAGCCCTAGCCGAACCGAGGGTTGTGGTAGCGGGACCGACAGCACGCA
650 GAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCACACA
* * * * *
22430746 CAGGGGGATCGGGCCGATCCCTGACTTGCGCATTATGCCTCTCCGGCCAGCTCAGCACCCGCACA
715 AAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCTCAACACCCGAACA
* * *
22430811 CTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAAGATCAGATCAGCCCGAG
780 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAG
*
22430876 GGTTGTGGCAGTAAGATCGACAGCACACAGGGGG
845 GGTTGTGGCAGTAAGATCGACAGCACACAGGAGG
* * * * * * * *
22430910 GGACCGGGTCGATCCCCGACTTACGCATTCTACCTCTTTGATCGGCTGAGTGACTGCATGCTCGT
1 GGACCGGCTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCTGCACGCTCGT
** *
22430975 TTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACAGAATTCATTCCCAGT
66 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGT
* * * * **
22431040 CTAAGATCGGACCCG-ACCGAGGGTTGCGACAAAAGGATCGGTAGCAGGATCGACAGCA-CACAG
131 CTAAGATCAGA-CCGAACCAAGGGTTACGACAAAAGGACCAATAGCAGGATCGACAGCACCACAG
** *
22431103 GGGGA-CTGGGCGGATCCCCGGCTTGCGCATTCT-GCCTCTCCGATCGACTAAGTGCCCGCACGC
195 GGGGATC-GGGCCAATCCCCGGCTTACGCATTCTAG-CTCTCCGATCGACTAAG-GCCCGCAC-C
* ** *
22431166 TT-ATTTCGTGGGTTGGCTTAGGCATACGGACGGAGTTCATTCCATGTTTAAGCCCTAACCTG-A
256 TTCATTTCATGGGTTGGCTTAGGCAT----ACGGAGTTCATTCCATGCGTAAGCCCCAACC-GAA
* * * * * *
22431229 CCGAGGGTTGTGGCAGCAGGACCGGTAGCGGGATCGGTAGCACGCAGAGGGGGACCGGGTTGATC
316 CCGAGGGTTGTGACAGCAGGACCGGTAGCGAGATCGATAGCACACAGAAGGGGACCGGGCTGATC
* * * * *
22431294 TTTAGCTTGCGCATTATGCCTCTTCGGCCGGCCTCTCT-GACTGGCTAAGCGCCCGCACGCTCGT
381 CTCAGCTTGCACATTATGCCTCTTCGGCCGGCCTCTCTGGAC-GGCTAAGCACCCGCACGCTCAT
* * * *
22431358 TTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACAGGGTTCATTCCCAAT
445 TTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCACTCCCAAT
* * * *
22431423 CTA-AGATCGAACCGGATCGAGGGTTGCGGTAGCAGGATCGACAGCATGAGGGGGGACCAGGCCG
510 CTACA-ATCGAACCGGACCAAGGGTTACGGTAGCAGGATCGACAGCACGA-GGGGGACCAGGCCG
* *
22431487 AT-CCTCGGCTTATGCATTCCGCCTCTCCGATAGGCTGAGCGCCCGCACGCCCATTTCATGGGTT
573 ATCCCT-GGCTTACGCATTCCGCCTCTCCGATAGGCTGAGCGCCCACACGCCCATTTCATGGGTT
* * *
22431551 GGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTTGTGGCAGCAGG
637 CGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAGG
** * * * * * *
22431616 ACCGGTAGCACACAAAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTTTTCGACCGGT
701 ACCGACAGCACACAAAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGC
* * * * *
22431681 TCAACGCCCGAACGCTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAGAT
766 TCAACACCCGAACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * **
22431746 CAGATCGGATCGAGGGTTGTGGCA-TCAGGATTGACAGCATGCAGGAGG
831 CAGATCAGACCGAGGGTTGTGGCAGT-AAGATCGACAGCACACAGGAGG
* * ** * * * *
22431794 GG-CTGGCT-GATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGCGCCCGTACACTCGT
1 GGACCGGCTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCTGCACGCTCGT
* * * * *
22431857 TTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGCTCATTCCCAGT
66 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGT
22431922 CTAAGAT
131 CTAAGAT
22431929 TTTGAGCCAC
Statistics
Matches: 860, Mismatches: 143, Indels: 29
0.83 0.14 0.03
Matches are distributed among these distances:
876 2 0.00
877 46 0.05
878 29 0.03
879 161 0.19
880 3 0.00
881 4 0.00
882 336 0.39
883 83 0.10
884 196 0.23
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (878 bp):
GGACCGGCTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCTGCACGCTCGT
TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGT
CTAAGATCAGACCGAACCAAGGGTTACGACAAAAGGACCAATAGCAGGATCGACAGCACCACAGG
GGGATCGGGCCAATCCCCGGCTTACGCATTCTAGCTCTCCGATCGACTAAGGCCCGCACCTTCAT
TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCGTAAGCCCCAACCGAACCGAGGGTTG
TGACAGCAGGACCGGTAGCGAGATCGATAGCACACAGAAGGGGACCGGGCTGATCCTCAGCTTGC
ACATTATGCCTCTTCGGCCGGCCTCTCTGGACGGCTAAGCACCCGCACGCTCATTTCGTGGGTTG
ACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCACTCCCAATCTACAATCGAA
CCGGACCAAGGGTTACGGTAGCAGGATCGACAGCACGAGGGGGACCAGGCCGATCCCTGGCTTAC
GCATTCCGCCTCTCCGATAGGCTGAGCGCCCACACGCCCATTTCATGGGTTCGCTTAGGCATAGG
AGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAA
AGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCTCAACACCCGAACAC
TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGG
GTTGTGGCAGTAAGATCGACAGCACACAGGAGG
Found at i:22431878 original size:157 final size:157
Alignment explanation
Indices: 22431422--22431900 Score: 448
Period size: 157 Copynumber: 3.0 Consensus size: 157
22431412 TCATTCCCAA
* * * *
22431422 TCTAAGATC-GAACCGGATCGAGGGTTGCGGTAGCAGGATCGACAGCATG-AGG-GGGGACCAGG
1 TCTAAGATCAG-ATCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGGAGGGG--CTGG
* ** * * ** * * * *
22431484 CCGATCCTCGGCTTATGCATTCCGCCTCTCCGATAGGCTGAGCGCCCGCACGCCCATTTCATGGG
63 CTGATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGAACGCTCGTTTCGTGGG
* *
22431549 TTGGCTTAGGCATAGGGAGTTTATTCCATG
128 TTGGCTTAGGCATATGGAGTTCATTCCATG
** * * * ** ** * *
22431579 TCTAAGCCCCAG-TCGAACCGAGGGTTGTGGCAGCAGGACCGGTAGCACACA-AAGGGGGATCGG
1 TCTAAG-ATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGGA-GGGGCT-GG
* * * * * * *
22431642 GTCGATCCCCGGCTTGCGCATTATGCCTTTTCGACCGGTTCAACGCCCGAACGCTCGTTTCGTGG
63 CT-GATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGAACGCTCGTTTCGTGG
* *
22431707 GTTGACTTATGCATATGGAGTTCATTCCCA-G
127 GTTGGCTTAGGCATATGGAGTTCATT-CCATG
* *
22431738 TCTAAGATCAGATCGGATCGAGGGTTGTGGCATCAGGATTGACAGCATGCAGGAGGGGCTGGCTG
1 TCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGGAGGGGCTGGCTG
* * * * *
22431803 ATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGCGCCCGTACACTCGTTTCGTCGGTTG
66 ATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTG
22431868 GCTTAGGCATATGGAGTTCATTCCATG
131 GCTTAGGCATATGGAGTTCATTCCATG
22431895 TCTAAG
1 TCTAAG
22431901 CATACGGAGC
Statistics
Matches: 247, Mismatches: 64, Indels: 22
0.74 0.19 0.07
Matches are distributed among these distances:
156 3 0.01
157 115 0.47
158 10 0.04
159 115 0.47
160 4 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
TCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGGAGGGGCTGGCTG
ATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTG
GCTTAGGCATATGGAGTTCATTCCATG
Found at i:22431914 original size:26 final size:26
Alignment explanation
Indices: 22431874--22431926 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22431864 GTTGGCTTAG
* *
22431874 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
22431900 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
22431926 G
1 G
22431927 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:22432632 original size:26 final size:26
Alignment explanation
Indices: 22432595--22432647 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22432585 GTTGACTCAG
22432595 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
22432621 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
22432647 G
1 G
22432648 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:22432982 original size:26 final size:26
Alignment explanation
Indices: 22432952--22433003 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
22432942 TTGATATACT
22432952 CATACAGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
*
22432978 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
22433004 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:22433479 original size:26 final size:26
Alignment explanation
Indices: 22433450--22433502 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22433440 GTTGGCTTGG
22433450 GCATACCGAGTTCATT-CCATGTCTAA
1 GCATACCGAGTTCATTCCCA-GTCTAA
*
22433476 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
22433502 G
1 G
22433503 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Done.