Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 219 of 402
Found at i:22433710 original size:25 final size:26
Alignment explanation
Indices: 22433659--22433710 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22433649 GTTGACTTAG
22433659 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
22433685 GCATACGGAGTTTATT-CCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22433710 G
1 G
22433711 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22434199 original size:26 final size:26
Alignment explanation
Indices: 22434159--22434211 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22434149 GTTGGCTTAG
* *
22434159 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
22434185 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
22434211 G
1 G
22434212 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:22435271 original size:26 final size:26
Alignment explanation
Indices: 22435235--22435286 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
22435225 TTGATATACT
22435235 CATACAGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
*
22435261 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
22435287 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:22435757 original size:157 final size:157
Alignment explanation
Indices: 22435318--22435761 Score: 443
Period size: 159 Copynumber: 2.8 Consensus size: 157
22435308 CGATAGTCGG
* ** * *
22435318 ATCGACAGCACGCA-GGGGGACCGGGCTGATCCCCAACTTGCGCATTCTGCCTCACCGGTCGGCT
1 ATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCT
** * * *
22435382 GAGCGTCC-GCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATTTCTAAGCC
66 GAGCG-CCTGCATG-CTTTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
* ** * *
22435446 CCAGCCGGACTGAGGGTTGTGGCAGCGGG
129 CCAGCCAGACTGAGGGTTGCAGCAGCAGC
* * * * *
22435475 ACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGTATT-TCGCATCTTCGGCCGG
1 ATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCT-GCCTCTCCGGCCGG
* * * * *
22435539 CTCAGTGCCTGCATGCTTGTTTCATGGGTTGACTTATGCATATGGAGTTCATTCCCA-GTCTAAG
64 CTGAGCGCCTGCATGCTT-TTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
*
22435603 -ATCAGACCAGA-TCGAGGGTTGCAGCAGCAGC
127 CACCAG-CCAGACT-GAGGGTTGCAGCAGCAGC
* * * * *
22435634 ATCGACAGCACGCAGGGGGGATCAGGCCAATCCCCGGCGTGCGCATTCTGCCTCTCCGACCGGCT
1 ATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCT
* * * *
22435699 GAGCGCCTGTACGCTTTTTCA-GAGGTTGGCTTGGGCATACCGAGTTCATTCCATGTCTAAGCA
66 GAGCGCCTGCATGCTTTTTCATG-GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
22435762 TACGGAGTTC
Statistics
Matches: 231, Mismatches: 44, Indels: 23
0.78 0.15 0.08
Matches are distributed among these distances:
156 4 0.02
157 46 0.20
158 61 0.26
159 117 0.51
160 3 0.01
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.23
Consensus pattern (157 bp):
ATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCT
GAGCGCCTGCATGCTTTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACC
AGCCAGACTGAGGGTTGCAGCAGCAGC
Found at i:22435762 original size:26 final size:26
Alignment explanation
Indices: 22435733--22435785 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22435723 GTTGGCTTGG
22435733 GCATACCGAGTTCATT-CCATGTCTAA
1 GCATACCGAGTTCATTCCCA-GTCTAA
*
22435759 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
22435785 G
1 G
22435786 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:22435993 original size:25 final size:26
Alignment explanation
Indices: 22435942--22435993 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22435932 GTTGACTTAG
22435942 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
22435968 GCATACGGAGTTTATT-CCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22435993 G
1 G
22435994 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22436618 original size:26 final size:26
Alignment explanation
Indices: 22436582--22436634 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22436572 GTTGATTTTG
*
22436582 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22436608 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22436634 G
1 G
22436635 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22437107 original size:157 final size:157
Alignment explanation
Indices: 22436608--22437140 Score: 486
Period size: 159 Copynumber: 3.4 Consensus size: 157
22436598 CCCAGTCTAA
* * *
22436608 GCATACGGAGTTCATTCC-CAGTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGA
1 GCATACGGAGTTCATTCCAC-GTCTAAGCACCA-ACCAAACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * * *
22436671 CAAGCACACA-GGGGGATCGGGCCAATCCCCGACTTACGCGTTCTACCTCTCCGACCGGCTGAGA
64 -TAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCG-GCGGCTGAGA
*
22436735 GCCCGCACGAC-CATTTCATGGGTTGGCTTAG
127 GCCCGCACG-CTCATTTCATGGGTTGACTTAG
* * * * ** * * *
22436766 GCATAGGGAGTTCGTTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCTGCGGGACCGATA
1 GCATACGGAGTTCATTCCACGTCTAAGCACCAACCAAACCGAGGGTTGTGGCAGCAGGATCGATA
* * * * * * *
22436831 GCACGTAGAGGGCGATCGGGCCGATCCCCAGCTTGCGTATTATGCCTCTCCGGTCGGCTCAGCA-
66 GCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGG-CGGCTGAG-AG
* *
22436895 CCCGCACGCTCATTTCTTGGGTTTACTTAG
128 CCCGCACGCTCATTTCATGGGTTGACTTAG
* * * **
22436925 GCATACGGAGTTCATTCTTA-ATCTAAG-ATCAGACCAAACCGAGGGTTGTGGCAGCATAATCGA
1 GCATACGGAGTTCATTC-CACGTCTAAGCACCA-ACCAAACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * *
22436988 TAGCATGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTACCTCTTCGGCGGCTGAGTGC
64 TAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCGGCTGAGAGC
* *
22437053 CCGCACGCTCGTTTCGTGGGTTGACTTAG
129 CCGCACGCTCATTTCATGGGTTGACTTAG
** * * * * *
22437082 GCATACAAAATTCATTCCACGTCTAAGCCCCAATCGAACCGAGGGTTGTGGCAGTAGGA
1 GCATACGGAGTTCATTCCACGTCTAAGCACCAACCAAACCGAGGGTTGTGGCAGCAGGA
22437141 CCGGTAGCGG
Statistics
Matches: 295, Mismatches: 68, Indels: 25
0.76 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 82 0.28
158 89 0.30
159 121 0.41
160 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCACGTCTAAGCACCAACCAAACCGAGGGTTGTGGCAGCAGGATCGATA
GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCGGCTGAGAGCCC
GCACGCTCATTTCATGGGTTGACTTAG
Found at i:22437297 original size:26 final size:26
Alignment explanation
Indices: 22437268--22437319 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
22437258 TGACTTAGGC
22437268 ATACGGAGTTCATCCCCAGTCTAAGA
1 ATACGGAGTTCATCCCCAGTCTAAGA
*
22437294 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATCCCCAGTCTAAGA
22437320 CCAGACTAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGA
Found at i:22437774 original size:26 final size:26
Alignment explanation
Indices: 22437738--22437790 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22437728 GTTGACTTAG
* *
22437738 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
*
22437764 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
22437790 G
1 G
22437791 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTCTAA
Found at i:22438067 original size:159 final size:158
Alignment explanation
Indices: 22437797--22438095 Score: 346
Period size: 159 Copynumber: 1.9 Consensus size: 158
22437787 TAAGATCGAA
* *
22437797 TCGGACCGAGGGTTACGGCAGCAAGATCGATAGCACGCAGGGGGGACCAAGTCGATCCCTGGCTT
1 TCGGACCGAGGGTTACGGCAGCAAGACCGATAGCACGCAGGGGGGACCAAGTCGATCCCCGGCTT
* ** * * *
22437862 GCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCACACGCCCATTTCGTGTGTTGGTTTAGGCATA
66 GCGCATTCTACCTCTCCGACCGGCTGAGCACCCACACGCCCATTTCGTGGGTTGGCTTAGGCAAA
*
22437927 GGGAGTTCATTCTATGTCTAAGCCCCAG
131 CGGAGTTCATTCTATGTCTAAGCCCCAG
** ** * * **
22437955 TCGGACCGAGGGTTGTGGCAGCGGGACCGATAGCATGTAGAGGGGGACCGGGTCGATCCCCGGCT
1 TCGGACCGAGGGTTACGGCAGCAAGACCGATAGCACGCAG-GGGGGACCAAGTCGATCCCCGGCT
** ** *** * * *
22438020 TTTGCATTCTACCTCTTTGGTTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAA
65 TGCGCATTCTACCTCTCCGACCGGCTGAGCACCCACACGCCCATTTCGTGGGTTGGCTTAGGCAA
22438085 ACGGAGTTCAT
130 ACGGAGTTCAT
22438096 CCCCAGTCTA
Statistics
Matches: 113, Mismatches: 27, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
158 33 0.29
159 80 0.71
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (158 bp):
TCGGACCGAGGGTTACGGCAGCAAGACCGATAGCACGCAGGGGGGACCAAGTCGATCCCCGGCTT
GCGCATTCTACCTCTCCGACCGGCTGAGCACCCACACGCCCATTTCGTGGGTTGGCTTAGGCAAA
CGGAGTTCATTCTATGTCTAAGCCCCAG
Found at i:22438340 original size:343 final size:343
Alignment explanation
Indices: 22437710--22438438 Score: 1118
Period size: 343 Copynumber: 2.1 Consensus size: 343
22437700 CAGAAGCGGT
*
22437710 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGT
1 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGT
*
22437775 TCATTCACAGTCTAAGATCGAATCGGACCGAGGGTTACGGCAGCAAGATCGATAGCACGCAGGGG
66 TCATTCACAGTCTAAGATCGAATCAGACCGAGGGTTACGGCAGCAAGATCGATAGCACGCAGGGG
* **
22437840 GGACCAAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCACACGCCCAT
131 GAACCAAGTCGATCCCCCGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCACACGCCCAT
* *
22437905 TTCGTGTGTTGGTTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAGTCGGACCGAGGGTTG
196 TTCGTGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTG
* * * *
22437970 TGGCAGCGGGACCGATAGCATGTAGAGGGGGACCGGGTCGATCCCCGGCTTTTGCATTCTACCTC
261 TGGCAGCGAGACCGACAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTACCTC
** *** *
22438035 TTTGGTTGGCTGAGCACC
326 TCCGACAGGCTAAGCACC
* *
22438053 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCAAACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
1 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGT
* *
22438118 TCATTCCCAGTCTAAGATCGAA-CTAGACCGAGGGTTGCGGCAGCAAGATCGATAGCACGCAGGG
66 TCATTCACAGTCTAAGATCGAATC-AGACCGAGGGTTACGGCAGCAAGATCGATAGCACGCAGGG
* * * * **
22438182 GGAACCAAGTTGATCCCCCGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGCATGCCTG
130 GGAACCAAGTCGATCCCCCGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCACACGCCCA
* *
22438247 TTTTGTGTGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
195 TTTCGTGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
* * *
22438312 GTGGCAGTGAGACCGGCAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCT
260 GTGGCAGCGAGACCGACAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTACCT
*
22438377 CTCCGACAGGCTAAGCGCC
325 CTCCGACAGGCTAAGCACC
* * *
22438396 CGCACGCTCATTTCATGGGTTGGCTTAGGCATATGGAGTTCAT
1 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
22438439 TTCTAGTATA
Statistics
Matches: 348, Mismatches: 37, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
342 1 0.00
343 347 1.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (343 bp):
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGT
TCATTCACAGTCTAAGATCGAATCAGACCGAGGGTTACGGCAGCAAGATCGATAGCACGCAGGGG
GAACCAAGTCGATCCCCCGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCACACGCCCAT
TTCGTGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTG
TGGCAGCGAGACCGACAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTACCTC
TCCGACAGGCTAAGCACC
Found at i:22439154 original size:26 final size:26
Alignment explanation
Indices: 22439118--22439170 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22439108 GTTGGCTTAG
22439118 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
22439144 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
22439170 G
1 G
22439171 ATCAAATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:22439350 original size:26 final size:26
Alignment explanation
Indices: 22439314--22439366 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22439304 GTTGACTTAG
22439314 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
22439340 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22439366 G
1 G
22439367 ATCGAACCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22439525 original size:185 final size:189
Alignment explanation
Indices: 22439100--22439526 Score: 508
Period size: 185 Copynumber: 2.2 Consensus size: 189
22439090 CGCAAGCTCA
*
22439100 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
* ** * *
22439165 TCTAAGATCAAATCGGACCGAGGCTTACGGTAGTAGGACCAGTAGTAGGATCGACAGCATGCAGA
66 TCTAAGATCAAACCAAACCGAGGCTTA--G-AG-AGGA-CA--AGCAGGATCGACAGCACGCAGA
* * * ** * *
22439230 GGGGACCGGGTCGGTCCCCGGCTTACGCATTCTGCCTCTTTGGTCGGTTGAACGCCCGCACGCTC
124 GGGGACCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCAGCTCGGTTGAACGCCCGCACGCCC
22439295 G
189 G
* *
22439296 TTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCTAGTCTAAGCATACGGAGTTCATTCCCA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATACGGAGTTCATTCCCA
* * *
22439360 GTCTAAGATCGAACCAAACTGAGGGTT-G-G-GG-C-AGCAGGATCGACAGCACGCAGAGGGAGA
65 GTCTAAGATCAAACCAAACCGAGGCTTAGAGAGGACAAGCAGGATCGACAGCACGCAGAGGG-GA
* ** *
22439420 CCGGGCCGATCCTCAGCTTGGGCATTCTGCCTCTCCAGCT-GGTTGAGCGCCCGCACGCCCG
129 CCGGGCCGATCCCCAGCTTACGCATTCTGCCTCT-CAGCTCGGTTGAACGCCCGCACGCCCG
*
22439481 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
22439527 CCAAGCTGGA
Statistics
Matches: 202, Mismatches: 25, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
184 23 0.11
185 87 0.43
186 6 0.03
187 1 0.00
189 2 0.01
191 1 0.00
193 1 0.00
195 4 0.02
196 77 0.38
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (189 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCAAACCAAACCGAGGCTTAGAGAGGACAAGCAGGATCGACAGCACGCAGAGGGGACC
GGGCCGATCCCCAGCTTACGCATTCTGCCTCTCAGCTCGGTTGAACGCCCGCACGCCCG
Found at i:22439695 original size:26 final size:26
Alignment explanation
Indices: 22439658--22439710 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22439648 GTTGGCTTAG
22439658 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
22439684 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22439710 G
1 G
22439711 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22440772 original size:26 final size:26
Alignment explanation
Indices: 22440694--22440763 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
22440684 GTTGGCCTAG
*
22440694 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
22440720 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
22440746 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
22440764 TAGGCTAAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:22441820 original size:26 final size:26
Alignment explanation
Indices: 22441780--22441837 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
22441770 CGTGGGTTGA
22441780 CTAAGGCATACGGAGTTCATCCCCAGT
1 CTAA-GCATACGGAGTTCATCCCCAGT
* * *
22441807 CTAAGCATATGGAGTTCATTCCTAGT
1 CTAAGCATACGGAGTTCATCCCCAGT
22441833 CTAAG
1 CTAAG
22441838 ATCAAATCGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATCCCCAGT
Found at i:22442338 original size:26 final size:26
Alignment explanation
Indices: 22442286--22442338 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22442276 GTTACCTTAG
*
22442286 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
22442312 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
22442338 G
1 G
22442339 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:22442670 original size:26 final size:26
Alignment explanation
Indices: 22442641--22442693 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22442631 GTTAGATTAG
* *
22442641 GCATACGGAGTTGATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
22442667 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22442693 G
1 G
22442694 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22443342 original size:26 final size:26
Alignment explanation
Indices: 22443306--22443358 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22443296 GTTGACTTAG
*
22443306 GCATACAGAGTTTA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
22443332 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22443358 G
1 G
22443359 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22443858 original size:26 final size:26
Alignment explanation
Indices: 22443806--22443858 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22443796 GTTGGCTTAG
*
22443806 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
*
22443832 GCATATGGAGTTCATTCCCA-GTATAA
1 GCATACGGAGTTCATT-CCATGTATAA
22443858 G
1 G
22443859 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:22444162 original size:171 final size:171
Alignment explanation
Indices: 22443900--22444232 Score: 386
Period size: 171 Copynumber: 1.9 Consensus size: 171
22443890 ACTAGCAGCA
* * * * *
22443900 GGATTGACAGCACACAGGGGGGGATCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTTCAATCA
1 GGATCGACAGCACACAGAGGGGGATCGGGTCGATCCCCAGCTTGGGCATTATGCCTCTCCAATCA
* * * * * * * * *
22443965 TGTGAGTGCTCGCATGCTCGTTTCATGGGTTGGCTCAGGCATACGGAGTTAATT-CCATGTTTAA
66 GGTCAGCGCCCGAATGCTCATTTCATGGGTTGACTCAGGCATACAGAGTTAATTCCCA-GTCTAA
* *
22444029 GCCCCAG-TCAGATCGAGGGTTGTGGCAGCAGGACCGGCAGTG
130 G-ACCAGATCAGACCGAGGGTTGTGGCAGCAGGACCGGCAGTG
* * *
22444071 GGATCGACAGCACGCAGAGGGGGATCGGG-CTGATCCCCGGCTTGGGCATTATGCCTCTCCGATC
1 GGATCGACAGCACACAGAGGGGGATCGGGTC-GATCCCCAGCTTGGGCATTATGCCTCTCCAATC
* * *
22444135 -GGCTCAGCGCCCGAATGCTCATTTCATGGGTTGACTTAGGCGTACAGAGTTCATTCCCAGTCTA
65 AGG-TCAGCGCCCGAATGCTCATTTCATGGGTTGACTCAGGCATACAGAGTTAATTCCCAGTCTA
* *
22444199 AGATCAGATCGGACCGAGGGTTGTGGCAGCAGGA
129 AGACCAGATCAGACCGAGGGTTGTGGCAGCAGGA
22444233 TCGACAGCAT
Statistics
Matches: 134, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
170 5 0.04
171 126 0.94
172 3 0.02
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.23
Consensus pattern (171 bp):
GGATCGACAGCACACAGAGGGGGATCGGGTCGATCCCCAGCTTGGGCATTATGCCTCTCCAATCA
GGTCAGCGCCCGAATGCTCATTTCATGGGTTGACTCAGGCATACAGAGTTAATTCCCAGTCTAAG
ACCAGATCAGACCGAGGGTTGTGGCAGCAGGACCGGCAGTG
Found at i:22444323 original size:158 final size:159
Alignment explanation
Indices: 22444071--22444358 Score: 341
Period size: 158 Copynumber: 1.8 Consensus size: 159
22444061 ACCGGCAGTG
** *
22444071 GGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGGGCATTATGCCTCTCCGATCG
1 GGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTACGCATTATACCTCTCCGATCG
* *
22444136 GCTCAGCGCCCGAATGCTCATTTCATGGGTTGACTTAGGCG-TACAGAGTTCATTCCCA-GTCTA
66 GCTCAACGCCCGAACGCTCATTTCATGGGTTGACTTAGG-GATACAGAGTTCATT-CCATGTCTA
22444199 AGATCAGATCGGACCGAGGGTTGTGGCAGCA
129 AGATCAGATCGGACCGAGGGTTGTGGCAGCA
* * * * * * *
22444230 GGATCGACAGCATGCAG-GGGGGCTCGAG-TCGGTCCCTGGCTTACGCATTCTACCTCTCCGGTC
1 GGATCGACAGCACGCAGAGGGGGATCGGGCT-GATCCCCGGCTTACGCATTATACCTCTCCGATC
* * ** * * **
22444293 GGCTGAACGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGGATATGGAGTTCATTCCATGTCTAA
65 GGCTCAACGCCCGAACGCTCATTTCATGGGTTGACTTAGGGATACAGAGTTCATTCCATGTCTAA
22444358 G
130 G
22444359 TATACGGAGT
Statistics
Matches: 106, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
157 5 0.05
158 85 0.80
159 16 0.15
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (159 bp):
GGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTACGCATTATACCTCTCCGATCG
GCTCAACGCCCGAACGCTCATTTCATGGGTTGACTTAGGGATACAGAGTTCATTCCATGTCTAAG
ATCAGATCGGACCGAGGGTTGTGGCAGCA
Found at i:22444437 original size:526 final size:515
Alignment explanation
Indices: 22443471--22445485 Score: 1624
Period size: 526 Copynumber: 3.9 Consensus size: 515
22443461 CGTACGTCCA
* * *
22443471 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CTAGATCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC-AGATCGAGGGT
* * * * * * *
22443535 TGTGGCA--G-TG---GGACTGATAGCATGCAGAGGGGGATCGAGCCGATCCCTGGCATGCGCAT
65 TGTGGCAGCGAGGCATGGAC-GACAGCACGCAGAGGGGGATCGAGCTGATCCCCGGCTTACGCAT
* * * * * * *
22443594 TATGCCTCTTCGGTCGACTCAGTGCCTGCACGCTCGTTTCGTGGGTTAACCTAGGCATAC-GAAG
129 TATGCCTCTCCGGTCGACTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACAG-AG
* * * ** * **
22443658 TTCATTCCTAGTCTAAGATC-GAATCAGACTGAAGGTTAAGGCAGCAGGATCGATAGCACATAGG
193 TTCATTCC-AGTCTAAGATCAG-ATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGG
* * * * * * *
22443722 GGAGACCGGGT-TGGT-TCTCGGCTTACGCATTCTGCCTCACC-GACAGGTTGAGCTCCCACACG
256 GG-GACCGAGTCTGGTCCCTCGGCTTACGCATTCTACCTCTCCGGTC-GGTTGAGCGCCCGCACG
* * *
22443784 CTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTC
319 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
* * * * * * * *
22443849 CCAGT-ATAAGATCGGACCAAATCGAGGGTTGCGATAGTAGTACTAGCAGCAGGATTGACAGCAC
384 CCAGTCA-AAGATCAGACCAGACCGA-GGTTGCGGTAGCAGGACAAG-A-CAGGATCGACAGCAC
** * * ** *
22443913 ACAGGGGGGGATCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTTCAATCATG-TGAGTGCTCG
445 GTA-GGGGGGATCAGGTCGATCCTC-GCTTGCACATTCTGCCTCTTCAATCATGTTGAGTGCCCG
22443977 CATGCTCG
508 CATGCTCG
* * * *
22443985 TTTCATGGGTTGGCTCAGGCATACGGAGTTAATTCCATGTTTAAGCCCCAGTCAGATCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGAGGGTT
* *
22444050 GTGGCAGCAGGACCGGCAGTGGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTG
66 GTGGCAGC--GA--GGCA-T-GGA-CGACAGCACGCAGAGGGGGATCGAGCTGATCCCCGGCTTA
* * * * * *
22444115 GGCATTATGCCTCTCCGATCGGCTCAGCGCCCGAATGCTCATTTCATGGGTTGACTTAGGCGTAC
124 CGCATTATGCCTCTCCGGTCGACTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATAC
*
22444180 AGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCATGC
189 AGAGTTCATT-CCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
* * *
22444245 AGGGGGGCTCGAGTC-GGTCCCT-GGCTTACGCATTCTACCTCTCCGGTCGGCTGAACGCCCGCA
253 AGGGGGAC-CGAGTCTGGTCCCTCGGCTTACGCATTCTACCTCTCCGGTCGGTTGAGCGCCCGCA
* * * *
22444308 CGCTTGTTTCGTGGGTTGGCTTAGGGATATGGAGTTCATTCCATGTCTAAGTATACGGAGTTCAT
317 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
* * *
22444373 TCCCAATCAAAGATCGGACCAGACCGACGGTTGCGGTAGCAGGACCAATGATAGGATCGACAGCA
382 TCCCAGTCAAAGATCAGACCAGACCGA-GGTTGCGGTAGCAGGA-CAA-GACAGGATCGACAGCA
* * * *
22444438 CGTAAGGAGGGACCAGGTCGATCCTCGACTTGCACATTCTCCCTCTCCGATCGACCTCTCAAATC
444 CGT-AGGGGGGATCAGGTCGATCCTCG-CTTGCACATTCTGCCTCT----TC-A---ATC--AT-
* *
22444503 GATTGAGCGCCCGCATGCTCA
496 G-TTGAGTGCCCGCATGCTCG
* * * ** * **
22444524 TTTTGTGGGTTGACTTAGGTATACGGAGTTCATTCCCA-GTCTAAGATCAAACCAGATCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGTCAGATCGAGGGT
* * * * * *
22444588 TGTGGCAGC-AGG-AT-G--GACAGCACGTAGA-GGGGA-CCAGGTCGATCCTCAGCTTATGCAT
65 TGTGGCAGCGAGGCATGGACGACAGCACGCAGAGGGGGATCGAGCT-GATCCCCGGCTTACGCAT
* * * * * * *
22444646 TCTGCCTCTCCGGTCGGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACTGAGT
129 TATGCCTCTCCGGTCGACTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGT
** *
22444711 TCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCAGGATCGACAACACGCAAAG
194 TCATTCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC--AG
* * * *
22444775 GGGGACCGAG-CTGATCCCCAGCTTGGGCATTATGTC-TCTCCAGCCGGCCTCTCCGGTCGGTTG
255 GGGGACCGAGTCTGGT--CC--C-TCGGC-TTACG-CAT-TCTA-----CCTCTCCGGTCGGTTG
* * * * ** * *
22444838 AGTGCCCTCACGCTCGTTTCGTCGGTTGACTTAGGCATACAAAGTTCATCCTCA-ATCTAAGCAT
307 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCAT
* * * * *
22444902 ACGAAGTTCTTTCCCAGTCTAAGATCAGACTAGATCGAAGG-T----TA-C-GG-C-AG-CAGGA
371 ACGGAGTTCATTCCCAGTCAAAGATCAGACCAGACCG-AGGTTGCGGTAGCAGGACAAGACAGGA
* ** * * *
22444957 TCGACAGCATGTAGGGGGGATCAGACCGAT-CTCGGCTTGCACATTCTGCCTCTCCAGTC-GGTT
435 TCGACAGCACGTAGGGGGGATCAGGTCGATCCTC-GCTTGCACATTCTGCCTCTTCAATCATGTT
* * * *
22445020 GAATGCCCGTACGCCCG
499 GAGTGCCCGCATGCTCG
* * * * * *
22445037 GTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT-GGAACTAATGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGATC-GAGGGT
* * * * * *
22445101 TGAGGTAGC-AGG-A---CCGACAGCACACAGAGCGGGATCGAGCTGATCCCCGACTTACGCATT
65 TGTGGCAGCGAGGCATGGACGACAGCACGCAGAGGGGGATCGAGCTGATCCCCGGCTTACGCATT
*
22445161 ATGCCTCTCCGGTCGACTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGTATACAGAGTT
130 ATGCCTCTCCGGTCGACTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTT
* * * * *
22445226 CATTCCAGTCTAAGATCGGATCGGACCGACGGTTGTGACAGTAGGATCGATAGCACGCAGGGGGG
195 CATTCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA-GGGGG
* * * * * ** * *
22445291 ACCG-GGCTGGTCCC-CAGCTTGCGCATTCTGCCTCTTCGACCGATTGAGCACCCGCACGCTCGT
259 ACCGAGTCTGGTCCCTCGGCTTACGCATTCTACCTCTCCGGTCGGTTGAGCGCCCGCACGCTCGT
*
22445354 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGT
324 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * * *
22445419 CTAAGATCAGATCAGACCGAGGCTTGCGGTAGCAGGACCAGCAGCAGGATCGTCTGCACGTAAGG
389 CAAAGATCAGACCAGACCGAGG-TTGCGGTAGCAGGACAAG-A-CAGGATCGACAGCACGTAGGG
22445484 GG
451 GG
22445486 ACCGGGCTGA
Statistics
Matches: 1196, Mismatches: 218, Indels: 177
0.75 0.14 0.11
Matches are distributed among these distances:
498 5 0.00
499 95 0.08
500 1 0.00
504 5 0.00
505 5 0.00
506 4 0.00
507 1 0.00
508 3 0.00
510 2 0.00
511 21 0.02
512 21 0.02
513 117 0.10
514 148 0.12
515 5 0.00
518 3 0.00
521 2 0.00
522 1 0.00
525 9 0.01
526 463 0.39
527 50 0.04
528 23 0.02
529 3 0.00
530 4 0.00
531 3 0.00
532 2 0.00
533 6 0.01
534 10 0.01
535 6 0.01
536 3 0.00
537 1 0.00
539 73 0.06
540 98 0.08
541 3 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (515 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGAGGGTT
GTGGCAGCGAGGCATGGACGACAGCACGCAGAGGGGGATCGAGCTGATCCCCGGCTTACGCATTA
TGCCTCTCCGGTCGACTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTC
ATTCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGAC
CGAGTCTGGTCCCTCGGCTTACGCATTCTACCTCTCCGGTCGGTTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCA
AAGATCAGACCAGACCGAGGTTGCGGTAGCAGGACAAGACAGGATCGACAGCACGTAGGGGGGAT
CAGGTCGATCCTCGCTTGCACATTCTGCCTCTTCAATCATGTTGAGTGCCCGCATGCTCG
Found at i:22445407 original size:26 final size:26
Alignment explanation
Indices: 22445371--22445423 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22445361 GTTGGCTTAG
*
22445371 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
22445397 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22445423 G
1 G
22445424 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22445603 original size:26 final size:26
Alignment explanation
Indices: 22445566--22445618 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22445556 GTTGACTTAG
22445566 GCATACGAAGTTCATACCCAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
* *
22445592 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
22445618 G
1 G
22445619 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATACCCAGTCTAA
Found at i:22446662 original size:26 final size:26
Alignment explanation
Indices: 22446632--22446684 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22446622 GTTGACTTAG
22446632 GCATACGAAGTTCA-TCCCCAGCCTAA
1 GCATACGAAGTTCACT-CCCAGCCTAA
* *
22446658 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGCCTAA
22446684 G
1 G
22446685 ATGGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGCCTAA
Found at i:22447011 original size:26 final size:26
Alignment explanation
Indices: 22446975--22447027 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22446965 GTTGGTTTAG
*
22446975 GCATACGGAGTTCATTG-CATGTCTAA
1 GCATACAGAGTTCATTGCCA-GTCTAA
22447001 GCATACAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTGCCAGTCTAA
22447027 G
1 G
22447028 AGTTTGAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTGCCAGTCTAA
Found at i:22447735 original size:26 final size:26
Alignment explanation
Indices: 22447696--22447747 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
22447686 TAACTTAGGC
22447696 ATACAGAGTCCATTCCCAGTCTAAGA
1 ATACAGAGTCCATTCCCAGTCTAAGA
* *
22447722 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTCCATTCCCAGTCTAAGA
22447748 TCGAATTGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (26 bp):
ATACAGAGTCCATTCCCAGTCTAAGA
Found at i:22448030 original size:159 final size:159
Alignment explanation
Indices: 22447783--22448223 Score: 498
Period size: 159 Copynumber: 2.8 Consensus size: 159
22447773 GTAGGATCGG
*
22447783 CAGCACGCCGGGGGGACCGGGCCGATCCCCGGCTTATACATTCTGCCTCTCCGACCGGCTGAGCG
1 CAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTATACATTCTGCCTCTCCGACCGGCTGAGCG
* * * * *
22447848 CCCGCACGC-CTGTTTCTTAGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAG-
66 TCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCACCAGA
*
22447911 TC-AGACCGAGGGTTGTGGTAGCGGGACCGA
130 TCGA-ACCGAGGGTTGTGGTAGCAGGACCGA
* * *** * * * *
22447941 CAGCACGCAGAGGGGGACCGGGCTGATCCTCGGCTGGCACATTATGCTTCTCCGACCGACTCAGC
1 CAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTATACATTCTGCCTCTCCGACCGGCTGAGC
* * * * * * *
22448006 GTCCGCACACTCATTTCGTGGGTTGACTTA-GTCATATGGAGTTGATTCACA-GTCTAAG-ATCG
65 GTCCGCACGCTCGTTTCGTGGGTTGGCTTAGGT-ATACGGAGTTCATTC-CATGTCTAAGCACCA
** *
22448068 GATCGAATTGAGGGTTGTGGTAGCAGGATCGA
128 GATCGAACCGAGGGTTGTGGTAGCAGGACCGA
* * * * *
22448100 CAACACGTAGGGGGGACCGAGCCGATCCCCGGCTTATGCATTCTGCCTCTCCGATCGGCTGAGCG
1 CAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTATACATTCTGCCTCTCCGACCGGCTGAGCG
* *
22448165 TCCGCTCGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 TCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCA
22448224 TATGGAGTTC
Statistics
Matches: 228, Mismatches: 46, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
157 2 0.01
158 101 0.44
159 121 0.53
160 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
CAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTATACATTCTGCCTCTCCGACCGGCTGAGCG
TCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCACCAGAT
CGAACCGAGGGTTGTGGTAGCAGGACCGA
Found at i:22448184 original size:158 final size:158
Alignment explanation
Indices: 22447722--22448221 Score: 533
Period size: 158 Copynumber: 3.2 Consensus size: 158
22447712 CAGTCTAAGA
* * ** * * *
22447722 ATACGGAGTTCATTCCCA-GTCTAAGATCGAATTGGACTGAGGGTTACGGCAGTAGGATCGGCAG
1 ATACGGAGTTCATT-CCATGTCTAAGATCGAATCGAACTGAGGGTTGTGGTAGCAGGATCGACAG
* *
22447786 CACGCCGGGGGGACCGGGCCGATCCCCGGCTTATACATTCTGCCTCTCCGACCGGCTGAGCGCCC
65 CACGCAGGGGGGACCGGGCCGATCCCCGGCTTATACATTCTGCCTCTCCGACCGGCTGAGCGTCC
* *
22447851 GCACGC-CTGTTTCTTAGGTTGGCTTAGGT-
130 GCACGCTC-GTTTCGTGGGTTGGCTTA-GTC
* ** * * * * *
22447880 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-AGACCGAGGGTTGTGGTAGCGGGACCGACAG
1 ATACGGAGTTCATTCCATGTCTAAGATCGAATCGA-ACTGAGGGTTGTGGTAGCAGGATCGACAG
* * *** * * * *
22447944 CACGCAGAGGGGGACCGGGCTGATCCTCGGCTGGCACATTATGCTTCTCCGACCGACTCAGCGTC
65 CACGCAG-GGGGGACCGGGCCGATCCCCGGCTTATACATTCTGCCTCTCCGACCGGCTGAGCGTC
* * *
22448009 CGCACACTCATTTCGTGGGTTGACTTAGTC
129 CGCACGCTCGTTTCGTGGGTTGGCTTAGTC
* * * * *
22448039 ATATGGAGTTGATTCACA-GTCTAAGATCGGATCGAATTGAGGGTTGTGGTAGCAGGATCGACAA
1 ATACGGAGTTCATTC-CATGTCTAAGATCGAATCGAACTGAGGGTTGTGGTAGCAGGATCGACAG
* * * *
22448103 CACGTAGGGGGGACCGAGCCGATCCCCGGCTTATGCATTCTGCCTCTCCGATCGGCTGAGCGTCC
65 CACGCAGGGGGGACCGGGCCGATCCCCGGCTTATACATTCTGCCTCTCCGACCGGCTGAGCGTCC
* *
22448168 GCTCGCTCGTTTCGTGGGTTGGCTTAGGC
130 GCACGCTCGTTTCGTGGGTTGGCTTAGTC
22448197 ATACGGAGTTCATTCCATGTCTAAG
1 ATACGGAGTTCATTCCATGTCTAAG
22448222 CATATGGAGT
Statistics
Matches: 271, Mismatches: 63, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 5 0.02
158 142 0.52
159 120 0.44
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
ATACGGAGTTCATTCCATGTCTAAGATCGAATCGAACTGAGGGTTGTGGTAGCAGGATCGACAGC
ACGCAGGGGGGACCGGGCCGATCCCCGGCTTATACATTCTGCCTCTCCGACCGGCTGAGCGTCCG
CACGCTCGTTTCGTGGGTTGGCTTAGTC
Found at i:22448244 original size:26 final size:26
Alignment explanation
Indices: 22448195--22448247 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22448185 GTTGGCTTAG
*
22448195 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCATGTCTAA
*
22448221 GCATATGGAGTTCATCCC-TAGTCTAA
1 GCATACGGAGTTCATCCCAT-GTCTAA
22448247 G
1 G
22448248 ATTGGGCCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATGTCTAA
Found at i:22448607 original size:26 final size:26
Alignment explanation
Indices: 22448570--22448622 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22448560 GTTGACTTAG
22448570 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
22448596 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22448622 G
1 G
22448623 ATTGGATCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22449073 original size:158 final size:155
Alignment explanation
Indices: 22448596--22449097 Score: 422
Period size: 158 Copynumber: 3.2 Consensus size: 155
22448586 CCTAGTCTAA
* * * *
22448596 GCATACGG-AGTTCATTCCCA-GTCTAAGATTGGATCGTACCGAGGGTTGCGACAGCAGGATTGG
1 GCATA-GGAAGTTCATT-CCATGTCTAAGA-TCGAACGAACCGAGGGTTGCG-CAGCAGGATCGG
* * ** * * *
22448659 CAGCACGCAGGAGGGATCGGGTCGATCCCCGGCTTGCGCGTTCTGCCTCTTCAACCGACTGAACA
62 CAGCACGCAGGAGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTC-TCCGCCGGCTGAGCG
* * *
22448724 CCCGCACGCCCTTTTCGTGGGTTGGCTTAG
126 CCCGAACGCTCATTTCGTGGGTTGGCTTAG
** * * * * *
22448754 GCATAGGAAGTTCATTCCATGTCTAAGCCCCAACTGAACCGAGGGTTGTTGTAACGGGA-CTGGC
1 GCATAGGAAGTTCATTCCATGTCTAAGATCGAAC-GAACCGAGGGTTG-CGCAGCAGGATC-GGC
* * * * * * * * *
22448818 AGCACACAGAGAGGGACCGGGCCGATCCTCGACTTGCACATTATGCCTCTCCGATCGGCTCAGTG
63 AGCACGCAG-GAGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG-CCGGCTGAGCG
* * * *
22448883 CCCGAACGCTCGTTTTGTGGGTTGACATAG
126 CCCGAACGCTCATTTCGTGGGTTGGCTTAG
* * **
22448913 GCATA-CAGAGTTCATTCCCA-GTCTAAGATCGAACCAGACCGAGGGTTGCAGCAGCAGGATCAA
1 GCATAGGA-AGTTCATT-CCATGTCTAAGATCGAACGA-ACCGAGGGTTGC-GCAGCAGGATCGG
*
22448976 CAGCACGCAGGGGGGATCGGGCC-AGTCCCCGGCTTGCGCATTCTGCCTCTCCTGCCGGCTGAGC
62 CAGCACGCAGGAGGGATCGGGCCGA-TCCCCGGCTTGCGCATTCTGCCTCTCC-GCCGGCTGAGC
* * **
22449040 GCCCGTACGCTCATTTCATGCCTTGGCTTAG
125 GCCCGAACGCTCATTTCGTGGGTTGGCTTAG
*
22449071 GCATATGAAGTTCATTCCATGTCTAAG
1 GCATAGGAAGTTCATTCCATGTCTAAG
22449098 CATACGGACT
Statistics
Matches: 265, Mismatches: 63, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
157 11 0.04
158 136 0.51
159 114 0.43
160 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (155 bp):
GCATAGGAAGTTCATTCCATGTCTAAGATCGAACGAACCGAGGGTTGCGCAGCAGGATCGGCAGC
ACGCAGGAGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGCCGGCTGAGCGCCCGA
ACGCTCATTTCGTGGGTTGGCTTAG
Found at i:22449101 original size:26 final size:26
Alignment explanation
Indices: 22449071--22449130 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 26
22449061 CTTGGCTTAG
* *
22449071 GCATATGAAGTTCATTCC-ATGTCTAA
1 GCATACGAACTTCATTCCTA-GTCTAA
*
22449097 GCATACGGACTTCATTCCTAGTCTAA
1 GCATACGAACTTCATTCCTAGTCTAA
22449123 G-AT-CGAAC
1 GCATACGAAC
22449131 CAGACCGAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 4 0.14
25 2 0.07
26 22 0.76
27 1 0.03
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAACTTCATTCCTAGTCTAA
Found at i:22449298 original size:26 final size:26
Alignment explanation
Indices: 22449268--22449320 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22449258 TTTCGCTTAG
22449268 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCACA-GTCTAA
22449294 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
22449320 G
1 G
22449321 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:22450298 original size:158 final size:154
Alignment explanation
Indices: 22450039--22450537 Score: 502
Period size: 158 Copynumber: 3.2 Consensus size: 154
22450029 AAGATCGGAT
* * * *
22450039 CGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGCGACCGGGCCGATCCCTGGCTTG
1 CGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGG-CGATCCC-CGCTTG
* * *
22450104 CGCATTCTGCCTCTCCGGCTAGCTAAACACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
64 CGCATTCTGCCTCTCCGGC-AGCTAAACACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
*
22450169 GGAGTTCATTCCATGTCTAAGCCCCAC
128 AGAGTTCATTCCATGTCTAAGCCCCAC
* * *
22450196 TCGGACCGAGGGTTGTGGCAGCGGGA-CTGGCAGCATGCAGAGGGGGACCGGGCGGATCCCCGCA
1 -CGGACCGAGGGTTGTGGCAGCAGGATC-GGCAGCACGCAG-GGGGGACCGGGC-GATCCCCGCT
* * * * * * * * *
22450260 TGCGCATTATGCCTCTCCGGTCGGCTTAGCACCAGCACGCTCATTTTGTGGGTTGACTTATGCAT
62 TGCGCATTCTGCCTCTCCGG-CAGCTAAACACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
* **
22450325 ACAGAGTTCATTCCCA-GTCTAAGATCGGAC
126 ACAGAGTTCATT-CCATGTCTAAG-CCCCAC
* * * ** *
22450355 CGGACCGA-GGTT-TAGGCAGTAGGATCGACAACACAAAGGGGGGGACCAGGTCGATCCCCGGCT
1 CGGACCGAGGGTTGT-GGCAGCAGGATCGGCAGCACGCA-GGGGGGACC-GGGCGATCCCC-GCT
* * * * * * *
22450418 TGCGCATTCTACATCTCTGGCCAGCTGATCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCAT
62 TGCGCATTCTGCCTCTCCGG-CAGCTAAACACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
22450483 ACAGAGTTCATTCCATGTCTAAGCCCCAAC
126 ACAGAGTTCATTCCATGTCTAAGCCCC-AC
22450513 CGGACCGAGGGTTGTGGCAGCAGGA
1 CGGACCGAGGGTTGTGGCAGCAGGA
22450538 CCGATAGCAG
Statistics
Matches: 275, Mismatches: 51, Indels: 29
0.77 0.14 0.08
Matches are distributed among these distances:
156 1 0.00
157 38 0.14
158 199 0.72
159 36 0.13
160 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (154 bp):
CGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCGATCCCCGCTTGCG
CATTCTGCCTCTCCGGCAGCTAAACACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGA
GTTCATTCCATGTCTAAGCCCCAC
Found at i:22450919 original size:21 final size:21
Alignment explanation
Indices: 22450895--22450935 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
22450885 GCGGGATCGG
*
22450895 CAGCATGCAGAGGGGGACCGA
1 CAGCACGCAGAGGGGGACCGA
22450916 CAGCACGCAGAGGGGGACCG
1 CAGCACGCAGAGGGGGACCG
22450936 GGCAGATCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.27, G:0.44, T:0.02
Consensus pattern (21 bp):
CAGCACGCAGAGGGGGACCGA
Found at i:22451866 original size:26 final size:26
Alignment explanation
Indices: 22451836--22451888 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22451826 GTTGACTTAG
22451836 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
22451862 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22451888 G
1 G
22451889 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22452277 original size:159 final size:159
Alignment explanation
Indices: 22451864--22452278 Score: 383
Period size: 159 Copynumber: 2.6 Consensus size: 159
22451854 CAGTCTAAGC
* * *
22451864 ATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGAAAGCAGGATCGATAGG
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGATAGC
* * * * * * *
22451929 ACGCA-GGAGGGATTGAGTCGATCCCCGGCTTTCGCATTCTGCCTCTCCGAACTGGCTGAGCGCT
66 ACGCAGGGGGGGA-TGAGTCGATCCCCGACTTTCGCATTATGCCTCCCCGAACTGACTCAGCGCC
* * *
22451993 CACACGCCTGTTTCATGGGTTGGCTTAGGC
130 CACACGCCTATTTCATGGGTTGACTTAGGA
* * *** * * * * * *
22452023 ATAGGGAGTTCATT-CGATGTCTAATCCCCAG-TCGGATCGAGGGTTGTGACAGCGGGACCGGTA
1 ATACGGAGTTCATTCCCA-GTCTAA-GATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGATA
*** ** * * *
22452086 GCATATAGAAGGGGATCGAGCCGATCCTCGACTTAT-GCATTATGCCTCCCCGATC-GACTCAGC
64 GCACGCAGGGGGGGAT-GAGTCGATCCCCGACTT-TCGCATTATGCCTCCCCGAACTGACTCAGC
* *
22452149 GCCCGCACG-CTCATTTCATGGGTTGACTTAGTA
127 GCCCACACGCCT-ATTTCATGGGTTGACTTAGGA
* *
22452182 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGATAGC
* *
22452247 ACGCAGGGGGGGACTGGGTCGGTCCCCGACTT
66 ACGCAGGGGGGGA-TGAGTCGATCCCCGACTT
22452279 GCATATTCTG
Statistics
Matches: 192, Mismatches: 55, Indels: 18
0.72 0.21 0.07
Matches are distributed among these distances:
158 7 0.04
159 144 0.75
160 40 0.21
161 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (159 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGATAGC
ACGCAGGGGGGGATGAGTCGATCCCCGACTTTCGCATTATGCCTCCCCGAACTGACTCAGCGCCC
ACACGCCTATTTCATGGGTTGACTTAGGA
Found at i:22452369 original size:26 final size:26
Alignment explanation
Indices: 22452339--22452391 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22452329 GTTGGCTTAG
*
22452339 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
22452365 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22452391 G
1 G
22452392 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22452520 original size:185 final size:185
Alignment explanation
Indices: 22452182--22452551 Score: 469
Period size: 185 Copynumber: 2.0 Consensus size: 185
22452172 TGACTTAGTA
* * * *
22452182 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGACAGC
1 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATAGACAAC
* * * ** * * * * * *
22452247 ACGCAGGGGGGGACTGGGTCGGTCCCCGACTTGCATATTCTGCCTCTCTAGCTGGTTGAGCGCTC
66 ACGCAGGAGAGGACTAGACCGATACCCGACTTGCACATTCTGCCTCTCCAGCTGGCTGAGCGCCC
** *
22452312 GTTCGCTCGTTTCATGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
131 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
*
22452367 ATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGA-CGAAGGGTTGCGACAGCAGGATTAG-CA
1 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCG-AGGGTTGCGACAGCAGGA-TAGACA
* *
22452430 ACACGCAGGAGAGGA-TCAGACCGATACCCGGCTTTCACATTCTGCCTCTCCAGCCT-GCTGAGC
64 ACACGCAGGAGAGGACT-AGACCGATACCCGACTTGCACATTCTGCCTCTCCAG-CTGGCTGAGC
* *
22452493 GCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
127 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
22452552 CCCAGTCAGA
Statistics
Matches: 158, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
184 3 0.02
185 151 0.96
186 4 0.03
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (185 bp):
ATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATAGACAAC
ACGCAGGAGAGGACTAGACCGATACCCGACTTGCACATTCTGCCTCTCCAGCTGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
Found at i:22452730 original size:26 final size:26
Alignment explanation
Indices: 22452694--22452746 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22452684 GTTCACTTAG
22452694 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
22452720 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22452746 G
1 G
22452747 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22453082 original size:159 final size:159
Alignment explanation
Indices: 22452720--22453098 Score: 363
Period size: 159 Copynumber: 2.4 Consensus size: 159
22452710 CCCAGTCTAA
**
22452720 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGACCGAGGGTTGTGGCAGCAGGATCTGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGTGGCAGCAGGATCTGC
* * * * * * * * * * *
22452784 GGCATGCAAGAGGGATCGGGCTGATCCCTAGCTTACGAATTCTGCCTCTCCGATCGGTTGAGCAC
65 AGCACGCAAGAGGGACCAGGCTGATCCCCAACTTACGAATTATGCCTCTCCGACCGGCTCAACAC
* * *
22452849 CAGCACTCCCCGTTTCTTGGGTTGGCTTAG
130 CAGCACTCCCCATTTCGTGGGTTGACTTAG
* ** * * *
22452879 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGTAGCTGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCT-
* * * * *
22452941 GCAGCACGCAGAGGGGGACCAGGCTGATCCCCAACTTGCGCATTATGCCTCTTCGGCCGGCTCAA
63 GCAGCACGCA-AGAGGGACCAGGCTGATCCCCAACTTACGAATTATGCCTCTCCGACCGGCTCAA
* * * * *
22453006 CGCCCGCAC-GCTCATTTCGTGGGTTGACTTAT
127 CACCAGCACTCCCCATTTCGTGGGTTGACTTAG
* * *
22453038 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGTGACAGCAAGATC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATC
22453099 AACAGGACAT
Statistics
Matches: 171, Mismatches: 41, Indels: 15
0.75 0.18 0.07
Matches are distributed among these distances:
158 8 0.05
159 110 0.64
160 52 0.30
161 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCTGCA
GCACGCAAGAGGGACCAGGCTGATCCCCAACTTACGAATTATGCCTCTCCGACCGGCTCAACACC
AGCACTCCCCATTTCGTGGGTTGACTTAG
Found at i:22453226 original size:26 final size:26
Alignment explanation
Indices: 22453196--22453248 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22453186 GTTGGCTTAG
22453196 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22453222 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22453248 G
1 G
22453249 ATTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22453953 original size:26 final size:26
Alignment explanation
Indices: 22453917--22453969 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22453907 GTTGACTTAG
22453917 GCATACAGAGTTCA-TCCCCAGCCTAA
1 GCATACAGAGTTCAGT-CCCAGCCTAA
* *
22453943 GCATAGAGAGTTCAGTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGCCTAA
22453969 G
1 G
22453970 ATCGGACAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCCAGCCTAA
Found at i:22454296 original size:26 final size:26
Alignment explanation
Indices: 22454259--22454311 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22454249 GTTGACTTAG
*
22454259 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
22454285 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22454311 G
1 G
22454312 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22459814 original size:26 final size:26
Alignment explanation
Indices: 22459784--22459836 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22459774 GTTGACTTAG
*
22459784 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
22459810 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22459836 G
1 G
22459837 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22460100 original size:159 final size:159
Alignment explanation
Indices: 22459817--22460476 Score: 438
Period size: 159 Copynumber: 4.1 Consensus size: 159
22459807 TAAGCATACA
* ** * * * * * * * *
22459817 GAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGACAGTAGGATCGACAGCACG-T
1 GAGTTCATTCCCAGTCTAAGACCAGACCGGATCGAGGGTTGTGGCAGCAAGACCAACAGCACGCA
* * * * *
22459881 AAGGGGGATCGGGCCGACCCGT-GGCTTGCGCATTTTGCCTCTCCGACCGACAGAGTGCCCGCAC
66 AAGGGGGATCGGGCCGATCC-TCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCAC
* *
22459945 GCCCATTTTGTGGGTTGGCGTAGGCATAGG
130 GCCCATTTCGTGGGTTGACGTAGGCATAGG
* *
22459975 GAGTTCATT-CCATGTCTAA-ACCCTAG-CTGGA-CTGAGGGTTGTGGCAGCAGGACCAACAGCA
1 GAGTTCATTCCCA-GTCTAAGA-CC-AGACCGGATC-GAGGGTTGTGGCAGCAAGACCAACAGCA
* * * * *
22460036 CGCAAAGGGGGATCAGGCCGATCCTCGGCTTGCGCATTGTGCCTCTCCGGTCGGCTCAGCGCCCG
62 CGCAAAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCG
* * * * *
22460101 CACGCTCGTTTCGTGGGTTGACTTAGGTATATG
127 CACGCCCATTTCGTGGGTTGACGTAGGCATAGG
* * *
22460134 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAAGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGACCAGACCGGATCGAGGGTTGTGGCAGCAAGACCAACAGCACGCA
** * * * * * *
22460199 GGGGGGGACCGGGCTGATCCCCAGCTTACGCATCCTGCCTCTCCGGCCGACTGAGCGCCCGCACC
66 AAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCA--
** * * * * *
22460264 CGTACGCTTGTTTCATGGGTTAACTTATGCATACG
129 CG--C-C-CATTTCGTGGGTTGACGTAGGCATAGG
* *** * * * * * * * * * *
22460299 AAGTTCATTCCCAGTCTAAGAATGGATCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCATGGA
1 GAGTTCATTCCCAGTCTAAGACCAGACCGGATCGAGGGTTGTGGCAGCAAGACCAACAGCACGCA
** * * * * * * *
22460364 GGGGGGGAT-GGGCTGATCCTTGGCTTACACATGCTGCCTCTTCGGTC-AGCTGAGCGCCCGCAC
66 AAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGA-CTGAGCGCCCGCAC
* * * * * *
22460427 GCTCGTTTCATGGGTTGGCTTAGGCATACG
130 GCCCATTTCGTGGGTTGACGTAGGCATAGG
*
22460457 AAGTTCATT-CCATGTCTAAG
1 GAGTTCATTCCCA-GTCTAAG
22460477 CATACGGAGT
Statistics
Matches: 410, Mismatches: 74, Indels: 36
0.79 0.14 0.07
Matches are distributed among these distances:
157 8 0.02
158 87 0.21
159 177 0.43
160 6 0.01
161 2 0.00
162 2 0.00
163 2 0.00
164 44 0.11
165 82 0.20
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (159 bp):
GAGTTCATTCCCAGTCTAAGACCAGACCGGATCGAGGGTTGTGGCAGCAAGACCAACAGCACGCA
AAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACG
CCCATTTCGTGGGTTGACGTAGGCATAGG
Found at i:22463135 original size:158 final size:159
Alignment explanation
Indices: 22462765--22463172 Score: 405
Period size: 158 Copynumber: 2.6 Consensus size: 159
22462755 GCTTCAACTA
* * *
22462765 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTGAGCCT-ACCGAAG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAG-CTGACCGGAG
* * * *
22462829 AGGCATAATGCACAAGCCGGGGATCGGCCTGGTCCCCCTCTGCATGCTGCCGGTCCTGCTACCAC
65 AGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCAC
***
22462894 AACCCTCGGTCTGGCTGCGGCTCAGACATG
130 AACCCTCGGTCTCAATGCGGCTCAGACATG
* * * * * * *
22462924 GAATGAACTCCCTATGCCTAAGGCAACCCACAAAACGGGCGTGTGGGCGCTCAGCTGGCCGGAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCTGACCGGAGA
* * * **
22462989 GGCAGAATGCGCAAGCCGGGGATCGA-CTCGGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCCGT
66 GGCAGAATGCGCAAGCCGGGGATCGACCT-GGTCCCCCTCTGCATGCTGCCGATCCTGCTACCAC
* * * *
22463052 AACCCTTGGTC-CAATTCGATCTTAGAC-TGG
130 AACCCTCGGTCTCAATGCG-GCTCAGACAT-G
* * * * * *
22463082 GAATGAACTCCGTATGCATAAGTCAACCCACGTAACAAGCATCCGGGCACTCAG-TCGACCAGAG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCT-GACCGGAG
* * * *
22463146 GGGCAGGATGCGCAAACCGGAGATCGA
65 AGGCAGAATGCGCAAGCCGGGGATCGA
22463173 ATGGGTGGTA
Statistics
Matches: 201, Mismatches: 43, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
157 5 0.02
158 113 0.56
159 83 0.41
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (159 bp):
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCTGACCGGAGA
GGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCACA
ACCCTCGGTCTCAATGCGGCTCAGACATG
Found at i:22464144 original size:157 final size:159
Alignment explanation
Indices: 22463801--22464144 Score: 358
Period size: 157 Copynumber: 2.2 Consensus size: 159
22463791 AACTCCGTAT
* * * * * *
22463801 GCTTGGACATGGAATCAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* ** * * *
22463866 CCGGTCGGAGAGGCGTAATGCACAAGACGAGGATCAGCCCGATCCCCCTCTACGTGCTGCCGGTC
66 CCGGCCGGAGAGGCAAAATGCACAAGACGAGGATCAGCCCGATCCCCCTCTACATGCTACCGATC
*
22463931 CCGCTGCCACAACCCTCGGTCTGGCTGGG
131 CCGCTGCCACAACCCTCGGTCTGGCTGGA
* * *
22463960 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCGCGAAACGGGCATGC-GGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* ** * * *
22464024 TCGGCCGGAGAGGCAAAATGCGTAAG-CTGGGGATCGGCCCGATCCCCC-CTGCATGCTACCGAT
66 CCGGCCGGAGAGGCAAAATGCACAAGAC-GAGGATCAGCCCGATCCCCCTCTACATGCTACCGAT
* * * *
22464087 CCTGCTGTCGCAACCTTCGGT-TCGGTCT-GA
130 CCCGCTGCCACAACCCTCGGTCT-GG-CTGGA
* *
22464117 TCTTAGAC-TAGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
22464145 TTAGATTGGA
Statistics
Matches: 152, Mismatches: 29, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
156 2 0.01
157 55 0.36
158 48 0.32
159 47 0.31
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGGCCGGAGAGGCAAAATGCACAAGACGAGGATCAGCCCGATCCCCCTCTACATGCTACCGATC
CCGCTGCCACAACCCTCGGTCTGGCTGGA
Found at i:22464147 original size:26 final size:26
Alignment explanation
Indices: 22464118--22464170 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
22464108 TCGGTCTGAT
22464118 CTTAGACTAGGA-ATGAAC-TCTGTATG
1 CTTAGA-TAGGAGATGAACTTC-GTATG
*
22464144 CTTAGATTGGAGATGAACTTCGTATG
1 CTTAGATAGGAGATGAACTTCGTATG
22464170 C
1 C
22464171 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 4 0.17
26 18 0.75
27 2 0.08
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGATAGGAGATGAACTTCGTATG
Found at i:22464535 original size:26 final size:26
Alignment explanation
Indices: 22464497--22464549 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22464487 CCGGTCCGAT
*
22464497 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGGATG
22464523 CTTAGACAT-GGAATGAACTCTGGATG
1 CTTAGAC-TGGGAATGAACTCTGGATG
22464549 C
1 C
22464550 CTAAGCCGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGGATG
Found at i:22464826 original size:159 final size:159
Alignment explanation
Indices: 22464546--22464951 Score: 359
Period size: 159 Copynumber: 2.6 Consensus size: 159
22464536 TGAACTCTGG
* * * * * *
22464546 ATGCCTAAGCCGACCCACGAAACAAACGTGCGGGCACTCAGCCGACCG-GAGAGGCAGAATGCGC
1 ATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTAAGCCGA-CGAGAGAGGCAGAATGCGC
* * * *
22464610 AAACCGGGGATCAGCCC-AGTCCCCC-CCA-GCATGCTGTC-GATCCTGCTACTG-CA--ACCCT
65 AAGCCAGGGATCAGCCCGA-TCCCCCTCTATG--TGCTGCCAG-T-CT-C-ACTGCCACGACCCT
* * *
22464668 CGGACTGGTCT-AATCTTAGA-TTGGAAATAA-ACTTCGT
123 CGGACTGG-CTGAAGCTTAGACATGGAAATAACAC--CCT
* * * *
22464705 ATGCCTAAGTCAACCCATGAAACGAGCGTGTAGGCGCTAAGCCGACCGA-AGAGGCATAATGCGC
1 ATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTAAGCCGA-CGAGAGAGGCAGAATGCGC
*
22464769 AAGCCAGGGATCAGCCCGATCCCCCTCTATGTGCTGCCAGTCTCACTGCCACGACCCTCGGCCTG
65 AAGCCAGGGATCAGCCCGATCCCCCTCTATGTGCTGCCAGTCTCACTGCCACGACCCTCGGACTG
** *
22464834 GCTGGGGCTTAGACATGGAATTAACACCCT
130 GCTGAAGCTTAGACATGGAAATAACACCCT
* * * * *
22464864 ATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTTAGCCGACTAGAGAGGCAGAATGCGCA
1 ATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTAAGCCGACGAGAGAGGCAGAATGCGCA
* **
22464929 AGCCGGGGATTGGCCCGATCCCC
66 AGCCAGGGATCAGCCCGATCCCC
22464952 ATTGCGTGTT
Statistics
Matches: 202, Mismatches: 33, Indels: 24
0.78 0.13 0.09
Matches are distributed among these distances:
156 4 0.02
157 3 0.01
158 6 0.03
159 174 0.86
160 12 0.06
161 3 0.01
ACGTcount: A:0.25, C:0.32, G:0.27, T:0.16
Consensus pattern (159 bp):
ATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTAAGCCGACGAGAGAGGCAGAATGCGCA
AGCCAGGGATCAGCCCGATCCCCCTCTATGTGCTGCCAGTCTCACTGCCACGACCCTCGGACTGG
CTGAAGCTTAGACATGGAAATAACACCCT
Found at i:22471154 original size:159 final size:158
Alignment explanation
Indices: 22470932--22471514 Score: 563
Period size: 159 Copynumber: 3.6 Consensus size: 158
22470922 TAAACTGGGG
** * * * *
22470932 ATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCC-AGCCGGAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCATACGGGCGCTCAGCCGA-CCGGAGAG
* * * **
22470996 GCATAATGCACAAGCTGAGGATC-AGCCTGGTCCCCCTCTGCATGCTACCGATCCCACTGCCACA
65 GCAGAATGCACAAGCTGGGGATCGA-CCTGGTCCCCCTCTGCGTGCTGTCGATCCCACTGCCACA
* * ** *
22471060 ACCTTCGGTCCAGCTAGGGCTTAGACATGCA
129 ACCCTCAGTCTGGCT-GGGCTTAGACATGGA
* * ** *
22471091 ATGAACTCCCTATGCCTATGCCAACCCACGAAA-CAGGTGTGCGGGCGCTCAGCC-AGCCGGAGA
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGA-GCATACGGGCGCTCAGCCGA-CCGGAGA
*
22471154 GGCAGAATGCACAAG-TCGGGGATCGACCTGGTCCCCC-CTGCGTGCTGTCGATCCTACTGCTC-
64 GGCAGAATGCACAAGCT-GGGGATCGACCTGGTCCCCCTCTGCGTGCTGTCGATCCCACTGC-CA
*
22471216 TAACCCTCAGTCTGGTCTGGTCCGATCTTAGAC-TGGGA
127 CAACCCTCAGTCTGG-CTGG---G--CTTAGACAT-GGA
* * * * * * * *
22471254 ATGAACTCCGTATGCATAAGTCAACCAATGAAATGAGCATACGGGCGCTGAGCCGATCGAAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCATACGGGCGCTCAGCCGACCGGAGAGG
* ** * * *
22471319 CATAATGCGTAAGCTGGGGATCGA-CTCGATCCCCCCTCTGCGTGCTGTCGATCCCGCTACCACA
66 CAGAATGCACAAGCTGGGGATCGACCT-GGT-CCCCCTCTGCGTGCTGTCGATCCCACTGCCACA
22471383 ACCCTCAGTCTGGCTGGGGCTTAGACATGGA
129 ACCCTCAGTCTGGCT-GGGCTTAGACATGGA
* * * * *
22471414 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGGGTGCTCAGTCGATCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCATACGGGCGCTCAGCCGACCGGAGAGG
*
22471479 CAGAATGCGCAAGCTGGGGATCGACCTGGTCCCCCT
66 CAGAATGCACAAGCTGGGGATCGACCTGGTCCCCCT
22471515 TCATACTGTC
Statistics
Matches: 349, Mismatches: 54, Indels: 42
0.78 0.12 0.09
Matches are distributed among these distances:
158 33 0.09
159 94 0.27
160 89 0.26
161 4 0.01
162 4 0.01
163 78 0.22
164 11 0.03
165 36 0.10
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCATACGGGCGCTCAGCCGACCGGAGAGG
CAGAATGCACAAGCTGGGGATCGACCTGGTCCCCCTCTGCGTGCTGTCGATCCCACTGCCACAAC
CCTCAGTCTGGCTGGGCTTAGACATGGA
Found at i:22471222 original size:343 final size:336
Alignment explanation
Indices: 22470580--22471877 Score: 1093
Period size: 343 Copynumber: 3.8 Consensus size: 336
22470570 ATCCATTCTC
* * ** * * * * * *
22470580 AGACTAGGAATGAACTTTGTATGCATAAGTTAACCCATGAAACAAGCGTGCGGGTGCTGAGCCGG
1 AGACTGGGGATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAGCCAG
* * * * * *
22470645 TCGAAGAGGCATAATGCGCAAGC-CAGGGATCGGCTCGATCCCCCTCTACATGCTGCCGGTCCCA
66 CCGAAGAGGCATAATGCACAAGCTGA-GGATC-GCTCGATCCCCCTCTGCATGCTACCGATCCCA
22470709 CTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
129 CTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * *
22470774 AATGAAACGAGCATGAGGGCACTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATC-AGC
194 CACGAAACGAGCATGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGTCGAGGATCGA-C
* * * * *
22470838 CCGATCCCTCCTGCATTCTATC-AGTCCTACTAC-CGTAACCCTCAATCTAGTCCAATCTTAGAC
258 CTGGTCCCCCCTGCATGCTGTCGA-TCCTACT-CTCGTAA-CCTC--TCTAGTCC-ATCTTAGAC
22470901 TGTGAATGAACTCTGTATGCTT
317 TG-GAATGAACTC-GTATGCTT
* * * * * * *
22470923 AAACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCAG
1 AGACTGGGGATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAGCCAG
* *
22470988 CCGGAGAGGCATAATGCACAAGCTGAGGATCAGC-CTGGTCCCCCTCTGCATGCTACCGATCCCA
66 CCGAAGAGGCATAATGCACAAGCTGAGGATC-GCTC-GATCCCCCTCTGCATGCTACCGATCCCA
* * * *
22471052 CTGCCACAACCTTCGGTCCAGCTAGGGCTTAGACATGCAATGAACTCCCTATGCCTATGCCAACC
129 CTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
** * *
22471117 CACGAAAC-AGGTGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCACAAGTCGGGGATCGAC
194 CACGAAACGA-GCATGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGTCGAGGATCGAC
* * *
22471181 CTGGTCCCCCCTGCGTGCTGTCGATCCTACTGCTC-TAACC-CTC-AG----TC-TGGTCTGG--
258 CTGGTCCCCCCTGCATGCTGTCGATCCTACT-CTCGTAACCTCTCTAGTCCATCTTAGACTGGAA
22471236 T---C-CG-AT-CTT
322 TGAACTCGTATGCTT
* * * * *
22471245 AGACTGGGAATGAACTCCGTATGCATAAGTCAACCAATGAAATGAGCATACGGGCGCTGAGCC-G
1 AGACTGGGGATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAGCCAG
* ** * * **
22471309 ATCGAAGAGGCATAATGCGTAAGCTGGGGATCGACTCGATCCCCCCTCTGCGTGCTGTCGATCCC
66 -CCGAAGAGGCATAATGCACAAGCTGAGGATCG-CTCGAT-CCCCCTCTGCATGCTACCGATCCC
* * * * *
22471374 GCTACCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
128 ACTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * ** * *
22471439 CCACGAAACGGGCATACGGGTGCTCAGTCGATCGGAGAGGCAGAATGCGCAAG-CTGGGGATCGA
193 CCACGAAACGAGCATGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGTC-GAGGATCGA
* * * * *
22471503 CCTGGT-CCCCCTTCATACTGTCGATCCTGCTATCGCAAACCTCGGTCT-GATCCGATCTTAGAC
257 CCTGGTCCCCCCTGCATGCTGTCGATCCTACTCTCG-TAACCTC--TCTAG-TCC-ATCTTAGAC
22471566 TGGGAATGAACTCCGTATGCTT
317 T-GGAATGAACT-CGTATGCTT
* * * * * * *
22471588 AGAGTGGGGATGAACTCCGTATGCCTAAGTCCACCCACGAAACGTGCATGCGGGCGCTTAGTCGG
1 AGACTGGGGATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAGCCAG
* * * * * * * *
22471653 CCGGAGAGGCATAATGCATAAGCCGGGGATCAGCTCGGTCCTCTTCTGCATGCTACCAATCCCGC
66 CCGAAGAGGCATAATGCACAAGCTGAGGATC-GCTCGATCCCCCTCTGCATGCTACCGAT----C
* * *
22471718 TGCCTATCCTGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGAGATGGAATGAACTCCGTATAC
126 --CC-A-----CTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGC
* * * * * * *
22471783 CTAAGCCAACCCATGAAATGAGCGTGCAGGTGCTCAGCCGGTCGGAGAGGCAGAATTCACAAGTC
183 CTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGTC
* *
22471848 GAGGATCGGTCC-GGTCCCCTCCTGCGTGCT
248 GAGGATC-GACCTGGTCCCC-CCTGCATGCT
22471878 ATTGATCTTG
Statistics
Matches: 765, Mismatches: 137, Indels: 93
0.77 0.14 0.09
Matches are distributed among these distances:
321 4 0.01
322 107 0.14
323 141 0.18
324 2 0.00
325 1 0.00
326 4 0.01
329 1 0.00
331 1 0.00
332 7 0.01
333 6 0.01
334 2 0.00
336 1 0.00
338 2 0.00
339 3 0.00
341 3 0.00
342 21 0.03
343 327 0.43
344 6 0.01
346 1 0.00
348 2 0.00
354 109 0.14
355 7 0.01
356 7 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (336 bp):
AGACTGGGGATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAGCCAG
CCGAAGAGGCATAATGCACAAGCTGAGGATCGCTCGATCCCCCTCTGCATGCTACCGATCCCACT
GCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
CGAAACGAGCATGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGTCGAGGATCGACCTG
GTCCCCCCTGCATGCTGTCGATCCTACTCTCGTAACCTCTCTAGTCCATCTTAGACTGGAATGAA
CTCGTATGCTT
Found at i:22471588 original size:26 final size:26
Alignment explanation
Indices: 22471559--22471611 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22471549 CTGATCCGAT
22471559 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
22471585 CTTAGAGTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22471611 C
1 C
22471612 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22471685 original size:665 final size:663
Alignment explanation
Indices: 22470419--22471877 Score: 1697
Period size: 665 Copynumber: 2.2 Consensus size: 663
22470409 AACTCCGTAT
*
22470419 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * *
22470484 -CTGACCGGAGAGGCAGCATGCACAAGTAGAGAATC-AGCCCGTCCCCCCTACATGCTGTCGATC
66 CCAG-CCGGAGAGGCAGAATGCACAAGTCGAGGATCGA-CCGGTCCCCCCTGCGTGCTGTCGATC
* ** *
22470547 CTGCTACCGCAACCCTCGATCTGATCCATTCTCAGACTAGGAATGAACTTTGTATGCATAAGTTA
129 CTACTACCGCAACCCTCGATCTGATCCATTCTCAGACTAGGAATGAACTCCGTATGCATAAGTCA
* * * * *
22470612 ACCCATGAAACAAGCGTGCGGGTGCTGAGCCGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCG
194 ACCAATGAAACAAGCATACGGGCGCTGAGCCGATCGAAGAGGCATAATGCGCAAGCCAGGGATCG
* * * *
22470677 GCTCGATCCCCCTCTACATGCTGCCGGTCCCACTGCCACAACCCTCGGTCCGGCTAGGGCTTAGA
259 ACTCGATCCCCCTCTACATGCTGCCGATCCCACTACCACAACCCTCAGTCCGGCTAGGGCTTAGA
* *
22470742 CATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAACGAGCATGAGGGCACTCAGCCGGCCA
324 CATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGAGCATGAGGGCACTCAGCCGACCA
*
22470807 GAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCTCCTGCATTCTATCAGTCCTACTACC
389 GAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCTCCTGCATACTATCAGTCCTACTACC
* * * *
22470872 GTAACCCTCAATCTAGTCCAATCTTAGACTGTGAATGAACTCTGTATGCTTAAACTGGGGATGAA
454 GCAAACCTCAATCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGGATGAA
* * *
22470937 CTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCAGCCGGAGAGGCATAA
519 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGCTCAGCCAGCCGGAGAGGCATAA
* *
22471002 TGCACAAGCTGAGGATCAGC-CTGGTCCCCCTCTGCATGCTACCGAT-C-CC-A-CTGCCACAAC
584 TGCACAAGCCGAGGATCAGCTC-GGTCCCCCTCTGCATGCTACCAATCCGCCTACCTGCCACAAC
*
22471062 CTTCGGTCCAGCTAGG
648 CCTCGGTCCAGCTAGG
* * * * *
22471078 GCTTAGACATGCAATGAACTCCCTATGCCTATGCCAACCCACGAAAC-AGGTGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGTGCTCA
*
22471142 GCCAGCCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCTGGTCCCCCCTGCGTGCTGTCGATC
65 GCCAGCCGGAGAGGCAGAATGCACAAGTCGAGGATCGACC-GGTCCCCCCTGCGTGCTGTCGATC
* * * * * *
22471207 CTACTGCTC-TAACCCTCAGTCTGGTCTGGTCCGA-TCTTAGACTGGGAATGAACTCCGTATGCA
129 CTACTAC-CGCAA-CC-C--TC-GATCTGATCC-ATTCTCAGACTAGGAATGAACTCCGTATGCA
** * **
22471270 TAAGTCAACCAATGAAATGAGCATACGGGCGCTGAGCCGATCGAAGAGGCATAATGCGTAAGCTG
187 TAAGTCAACCAATGAAACAAGCATACGGGCGCTGAGCCGATCGAAGAGGCATAATGCGCAAGCCA
* * * * * *
22471335 GGGATCGACTCGATCCCCCCTCTGCGTGCTGTCGATCCCGCTACCACAACCCTCAGTCTGGCTGG
252 GGGATCGACTCGAT-CCCCCTCTACATGCTGCCGATCCCACTACCACAACCCTCAGTCCGGCTAG
* * **
22471400 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCAT-ACGGGTGCTC
316 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGAGCATGA-GGGCACTC
* * * * * * * * *
22471464 AGTCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATC-GACCTGGTCCC-CCTTCATACTGTC-G
380 AGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCAG-CCCGATCCCTCCTGCATACTATCAG
* * ** * *
22471526 ATCCTGCTATCGCAAACCTCGGTCT-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
444 -TCCTACTACCGCAAACCTCAATCTAG-TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAA
* * * * * * *
22471590 AGTGGGGATGAACTCCGTATGCCTAAGTCCACCCACGAAACGTGCATGCGGGCGCTTAGTCGGCC
507 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGCTCAGCCAGCC
* * * *
22471655 GGAGAGGCATAATGCATAAGCCGGGGATCAGCTCGGTCCTCTTCTGCATGCTACCAATCCCGCTG
572 GGAGAGGCATAATGCACAAGCCGAGGATCAGCTCGGTCCCCCTCTGCATGCTACCAAT--C-C-G
*
22471720 CCTATCCTGCTGCCACAACCCTCGGTCCGGCTAGG
633 CCTA--C--CTGCCACAACCCTCGGTCCAGCTAGG
* * * * *
22471755 GCTTAGAGATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAATGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * *
22471820 CCGGTCGGAGAGGCAGAATTCACAAGTCGAGGATCGGTCCGGTCCCCTCCTGCGTGCT
66 CCAGCCGGAGAGGCAGAATGCACAAGTCGAGGATC-GACCGGTCCCC-CCTGCGTGCT
22471878 ATTGATCTTG
Statistics
Matches: 665, Mismatches: 103, Indels: 45
0.82 0.13 0.06
Matches are distributed among these distances:
658 1 0.00
659 86 0.13
660 31 0.05
661 3 0.00
662 1 0.00
664 4 0.01
665 268 0.40
666 138 0.21
669 1 0.00
671 2 0.00
672 1 0.00
677 115 0.17
678 14 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (663 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCAGCCGGAGAGGCAGAATGCACAAGTCGAGGATCGACCGGTCCCCCCTGCGTGCTGTCGATCCT
ACTACCGCAACCCTCGATCTGATCCATTCTCAGACTAGGAATGAACTCCGTATGCATAAGTCAAC
CAATGAAACAAGCATACGGGCGCTGAGCCGATCGAAGAGGCATAATGCGCAAGCCAGGGATCGAC
TCGATCCCCCTCTACATGCTGCCGATCCCACTACCACAACCCTCAGTCCGGCTAGGGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGAGCATGAGGGCACTCAGCCGACCAGA
GAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCTCCTGCATACTATCAGTCCTACTACCGC
AAACCTCAATCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGGATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGCTCAGCCAGCCGGAGAGGCATAATG
CACAAGCCGAGGATCAGCTCGGTCCCCCTCTGCATGCTACCAATCCGCCTACCTGCCACAACCCT
CGGTCCAGCTAGG
Found at i:22472142 original size:26 final size:26
Alignment explanation
Indices: 22472113--22472165 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22472103 CTGGTCCGAT
* *
22472113 CTTAGATTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
22472139 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
22472165 C
1 C
22472166 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:22472785 original size:26 final size:26
Alignment explanation
Indices: 22472747--22472799 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22472737 GGCTCAAAAT
22472747 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
22472773 CTTAGACAT-GGAATGAAGTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22472799 C
1 C
22472800 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22473066 original size:159 final size:158
Alignment explanation
Indices: 22472773--22473268 Score: 647
Period size: 159 Copynumber: 3.1 Consensus size: 158
22472763 ACTCCGTATG
* * *
22472773 CTTAGACATGGAATGAAGTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
22472838 CGGCCGGAGAGGCAGGATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCCTGCGTGCTGTCGATCT
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCCCCTGCGTGCTGTCGATCC
*
22472903 TGCTGCCACAACCCTCGGTCCGGTCTGAT
130 TGCTGCCACAACCCTCGGTCCAGTCTGAT
* * *
22472932 CTTAGAC-TGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
22472996 CCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCTGATCCCCCTCTGCGTGCTGCCGGTC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGTCGATC
**
22473061 CTGCTGCCACAACCCTCGGTCCAG-CTGGGG
129 CTGCTGCCACAACCCTCGGTCCAGTCT-GAT
* * * * * * *
22473091 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCACTCTGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
22473156 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGGTCGGCCCGATCCCCCCTACGTGCTGTCGATCCT
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
* * *
22473221 ACTGTCGCAACCCTCGGTCCAGTCTGAT
131 GCTGCCACAACCCTCGGTCCAGTCTGAT
22473249 CTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
22473269 TGTATGCTTA
Statistics
Matches: 290, Mismatches: 41, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
157 1 0.00
158 61 0.21
159 227 0.78
160 1 0.00
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCAGTCTGAT
Found at i:22473278 original size:26 final size:26
Alignment explanation
Indices: 22473249--22473301 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22473239 CCAGTCTGAT
*
22473249 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22473275 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22473301 C
1 C
22473302 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22473772 original size:159 final size:157
Alignment explanation
Indices: 22473287--22473857 Score: 582
Period size: 159 Copynumber: 3.6 Consensus size: 157
22473277 TAGACTGGGG
* * * * * *
22473287 ATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCACTGAGCCGATCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGG
* * * * * *
22473352 CATAATGCGCAAGTC-GAGGATCGGCCTGGTCCCCCTCTGCGTGCTACCGATCCCGCTGCCACAA
66 CAGAATGCGCAAGCCAG-GGATCGGCCCGAT-CCCCTCTGCGTGCTATCGATCCTGCTGCCACAA
*
22473416 CCCTCGGTCTGGCTAGGGCTTAGACATGCA
129 CCCTCGGTCTGGCTAGGGCTTAG-CATGGA
* * *
22473446 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGTC-A---GAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGG
* * * * * * *
22473507 TAGAATGCGTAAGCCAAGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCCTGCTGCCGCAACC
66 CAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTGCGTGCTATCGATCCTGCTGCCACAACC
* **
22473572 CTCGGTCTGGTCCA-ATCTTAG-ATTGGGA
131 CTCGGTCTGG-CTAGGGCTTAGCA-T-GGA
* *** * * * * *
22473600 ATGAACTCTGTATGAAGAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAGCCAACCGAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGG
* * * *
22473665 CATAATGCGCAAGCCAGGGATCGGCTCGATCCCTCTCTGCGTGCTATC-AGTCCTACTACCACAA
66 CAGAATGCGCAAGCCAGGGATCGGCCCGATCCC-CTCTGCGTGCTATCGA-TCCTGCTGCCACAA
*
22473729 CCCTCGGTCTGGCTGGGGCTTAGTCATGGA
129 CCCTCGGTCTGGCTAGGGCTTAG-CATGGA
* ** *
22473759 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGG
* * *
22473824 CAGAATGCACAAGCCGGGGATCAGCCCGATCCCC
66 CAGAATGCGCAAGCCAGGGATCGGCCCGATCCCC
22473858 CCTACATGCT
Statistics
Matches: 330, Mismatches: 69, Indels: 27
0.77 0.16 0.06
Matches are distributed among these distances:
152 1 0.00
153 1 0.00
154 90 0.27
155 31 0.09
158 37 0.11
159 168 0.51
160 1 0.00
161 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGG
CAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTGCGTGCTATCGATCCTGCTGCCACAACC
CTCGGTCTGGCTAGGGCTTAGCATGGA
Found at i:22474227 original size:159 final size:158
Alignment explanation
Indices: 22473943--22474445 Score: 430
Period size: 159 Copynumber: 3.2 Consensus size: 158
22473933 ACTCCATATG
* * * * * * * ** * *
22473943 CTTAGACAT-GGAATGAACTCCATTTACCTAGGCCAATCCACGAAATAAGTGTGCGGGTGCTCAG
1 CTTAGA-ATGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGACCGTGCGGGCGCTCTG
* * * * * * *
22474007 TCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCTG-TCCCCCCTTGCATGCTGTCGAT
65 GCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCC-GATCCCCCC-TACGTCCTGTCGAT
* *
22474071 CCTACTACCGAAACCCTCGATCCGGTCTGAT
128 CCTACTGCCGAAACCCTCGGTCCGGTCTGAT
* * * * *
22474102 CTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAGCCCATGAAATGACCGTGCGGGTG-T-TGA
1 CTTAGAATGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGACCGTGCGGGCGCTCTG-
* * *
22474165 GCTGGCCGGAGAGGCATAATGCTCAAGCC-GGGTATCGACCCGATCGCCCTCTACGTCCTGTCGA
65 GC-GGCCGGAGAGGCAGAATGCGCAAGCCAGGG-ATCGACCCGATC-CCCCCTACGTCCTGTCGA
** * *
22474229 TCCCGCTGCC-ACAACCCTTGGTCTGG-CTGGCA-
127 TCCTACTGCCGA-AACCCTCGGTCCGGTCT-G-AT
* * * **
22474261 CTTAGACAT-GGAATAAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCTG
1 CTTAGA-ATGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGACCGTGCGGGCGCTCTG
* ** *
22474325 TCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGTGTGCTGTCGATCC
65 GCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTCCTGTCGATCC
* * *
22474390 TACTGTCGCAACCCTCGGTCCAGTCTGAT
130 TACTGCCGAAACCCTCGGTCCGGTCTGAT
* *
22474419 CTTAGACTGGGAATGAACTTTGTATGC
1 CTTAGAATGGGAATGAACTTCGTATGC
22474446 TTAGACTGTG
Statistics
Matches: 269, Mismatches: 58, Indels: 35
0.74 0.16 0.10
Matches are distributed among these distances:
157 3 0.01
158 63 0.23
159 190 0.71
160 11 0.04
161 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGAATGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGACCGTGCGGGCGCTCTGG
CGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTCCTGTCGATCCT
ACTGCCGAAACCCTCGGTCCGGTCTGAT
Found at i:22474469 original size:26 final size:26
Alignment explanation
Indices: 22474419--22474471 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22474409 CCAGTCTGAT
**
22474419 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22474445 CTTAGACTGTGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
22474471 C
1 C
22474472 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22474680 original size:502 final size:510
Alignment explanation
Indices: 22473433--22474701 Score: 1182
Period size: 514 Copynumber: 2.5 Consensus size: 510
22473423 TCTGGCTAGG
* * * *** * **
22473433 GCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCA-
1 GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAATAAGTGTGCGGGTGCTCAG
* * ** * * * **
22473497 --G-TCAGAGAGGTAGAATGCGTAAGCCAAGGATCGGCCCGATCCCCCC-TGCATGCTGTCGATC
66 CCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCTATCCCCCCTTGCATGCTACCGATC
** * * * * ** * * * ** *** *
22473558 CTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGATTGGGAATGAACTCTGTATGAAGAAGTCA
131 CCACTACCGAAACCCTCGATCCGGTCTGAGCTTAGAATGGCAATGAACTCCCTATGCCTAAGCCA
* ** * *
22473623 ACCCATGAAACGAGCGTGCGGGCACTGAGCCAACCGAAGAGGCATAATGCGCAAGCCAGGGATCG
196 ACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGCCGGAGAGGCATAATGCTCAAGCC-GGGATCG
* * * * * ** *
22473688 GCTCGATCCCTCTCTGCGTGCTATCAGTCCTACTACCACAACCCTCGGTCTGGCTGGGGCTTAGT
260 ACCCGATCCCTCTCTACGTCCTATCAGTCCCACTACCACAACCCTCGGTCTGGCTGGCACTTAGA
* * *
22473753 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCG
325 CATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCG
*
22473818 GAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTGTCAATCCTACTGTT
390 GAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCCCTACATGCTGTCAATCCTAC--TT
22473883 GGTCCTGCTACAGCAACCTTCGGTCCGATCCGATCTTAGAATGGGAATGAACTCCATAT
453 GGTCCTGCTACAGC-ACCTTCGGTCCGATCCGATCTTAGAATGGGAATGAACTCCATAT
* * *
22473942 GCTTAGACATGGAATGAACTCCATTTACCTAGGCCAATCCACGAAATAAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAATAAGTGTGCGGGTGCTCAG
* * **
22474007 TCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCTGTCCCCCCTTGCATGCTGTCGATC
66 CCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCTATCCCCCCTTGCATGCTACCGATC
* * * * * * *
22474072 CTACTACCGAAACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGTCA
131 CCACTACCGAAACCCTCGATCCGGTCTGAGCTTAGAATGGCAATGAACTCCCTATGCCTAAGCCA
* * * * * *
22474137 GCCCATGAAATGACCGTGCGGGTGTTGAGCTGGCCGGAGAGGCATAATGCTCAAGCCGGGTATCG
196 ACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGCCGGAGAGGCATAATGCTCAAGCCGGG-ATCG
* * * *
22474202 ACCCGATCGCC-CTCTACGTCCTGTC-GATCCCGCTGCCACAACCCTTGGTCTGGCTGGCACTTA
260 ACCCGATC-CCTCTCTACGTCCTATCAG-TCCCACTACCACAACCCTCGGTCTGGCTGGCACTTA
*** * *
22474265 GACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCTGTCGGC
323 GACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGC
* *** *
22474330 CGGAGAGGCAGAATGCGCAAGCCAGGGATC-GACCCGATCCCCCCTGTGTGCTGTCGATCCTAC-
388 CGGAGAGGCAGAATGCACAAGCCAGGGATCAG-CCCGATCCCCCCTACATGCTGTCAATCCTACT
* * ***
22474393 T-GT-C-GC-A-A-C-CC-TCGGTCC-AGTCTGATCTTAGACTGGGAATGAACTTTGTAT
452 TGGTCCTGCTACAGCACCTTCGGTCCGA-TCCGATCTTAGAATGGGAATGAACTCCATAT
* * * * * *
22474444 GCTTAGAC-TGTGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGTGCTGA
1 GCTTAGACATG-GAATGAACTCCATATACCTAAGCCAACCCACGAAATAAGTGTGCGGGTGCTCA
** * * * * * * * * *
22474508 GCCGGTCGGAGAGGCATAATGCGCAAGTCGGGGATC-AGCCTATTCCCCCTCTGCTTGCTACCGG
65 GCCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCTATCCCCCCT-TGCATGCTACCGA
* * * *
22474572 TCCCCCTGCC-ACAACCCTCGGTCCGG-CTAGGGCTTAGACAT-GCAATGAACTCCCTATGCCTA
129 TCCCACTACCGA-AACCCTCGATCCGGTCT-GAGCTTAGA-ATGGCAATGAACTCCCTATGCCTA
* * * *
22474634 AGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGT-AAGCCGA
191 AGCCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGCCGGAGAGGCATAATGC-TCAAGCCG-
22474698 GGAT
254 GGAT
22474702 TGGGCCGGTC
Statistics
Matches: 624, Mismatches: 119, Indels: 41
0.80 0.15 0.05
Matches are distributed among these distances:
501 17 0.03
502 219 0.35
503 6 0.01
505 1 0.00
506 1 0.00
507 1 0.00
508 2 0.00
509 53 0.08
510 2 0.00
511 1 0.00
512 1 0.00
513 42 0.07
514 276 0.44
515 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (510 bp):
GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAATAAGTGTGCGGGTGCTCAG
CCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCTATCCCCCCTTGCATGCTACCGATC
CCACTACCGAAACCCTCGATCCGGTCTGAGCTTAGAATGGCAATGAACTCCCTATGCCTAAGCCA
ACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGCCGGAGAGGCATAATGCTCAAGCCGGGATCGA
CCCGATCCCTCTCTACGTCCTATCAGTCCCACTACCACAACCCTCGGTCTGGCTGGCACTTAGAC
ATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCGG
AGAGGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCCCTACATGCTGTCAATCCTACTTGGT
CCTGCTACAGCACCTTCGGTCCGATCCGATCTTAGAATGGGAATGAACTCCATAT
Found at i:22474744 original size:343 final size:343
Alignment explanation
Indices: 22474102--22474888 Score: 1022
Period size: 343 Copynumber: 2.3 Consensus size: 343
22474092 CCGGTCTGAT
* * * * * * *
22474102 CTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAGCCCATGAAATGACCGTGCGGGTGTTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAGC
* * * * * **
22474167 TGGCCGGAGAGGCATAATGCTCAAGCCGGGTATCGACCCGATCGCCCTCTACGTCCTGTCGATCC
66 CGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGATCCCCCTCTACGTCCTACCGATCC
* * * *
22474232 CGCTGCCACAACCCTTGGTCTGGCTGGCACTTAGACATGGAATAAACTCCCTATGCCTAAGCCAA
131 CCCTGCCACAACCCTCGGTCCGGCTGGCACTTAGACATGCAATAAACTCCCTATGCCTAAGCCAA
* * *
22474297 CCCACGAAATGGGCGTGCGGGCGCTCTGTCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGA
196 CCCACGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGA
* * * *
22474362 CCCGATCCCCCCTGTGTGCTGTCGATCCTACTGTCGCAACCCTCGGTCCAGTCTGATCTTAGACT
261 CCCGATCCCCCCCGCGTGCTGTCGATCCTACTATCGCAACCCTCGGTCCAGTCCGATCTTAGACT
**
22474427 GGGAATGAACTTTGTATG
326 GGGAATGAACTCCGTATG
* *
22474445 CTTAGACTGTGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGTGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAGC
* * * * * * *
22474510 CGGTCGGAGAGGCATAATGCGCAAGTCGGGGATC-AGCCTATTCCCCCTCTGCTTGCTACCGGTC
66 CGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGA-TCCCCCTCTACGTCCTACCGATC
* *
22474574 CCCCTGCCACAACCCTCGGTCCGGCTAGG-GCTTAGACATGCAATGAACTCCCTATGCCTAAGCC
130 CCCCTGCCACAACCCTCGGTCCGGCT-GGCACTTAGACATGCAATAAACTCCCTATGCCTAAGCC
*
22474638 AACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGTAAGCC-GAGGAT
194 AACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCAG-GGAT
* ** * * *
22474702 TGGGCCGGTCCCCCCCGCGTGCTGTCGATCCTACTATCGCAACCCTCTGTCCGGTCCGATCTTAG
258 CGACCCGATCCCCCCCGCGTGCTGTCGATCCTACTATCGCAACCCTCGGTCCAGTCCGATCTTAG
22474767 ACTGGGAATGAACTCCGTATG
323 ACTGGGAATGAACTCCGTATG
* * * ** *
22474788 CTTAGACTGGGGATGAACTCCCTATGCCTAAGTTAACCCACAAAATGAGCGTGCGGACGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAGC
* * ** *
22474853 CGACCAGAGAGGCAGGATGCGCAAGTTGGGGATCGA
66 CGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGA
22474889 ACGGGTGGTA
Statistics
Matches: 381, Mismatches: 59, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
342 5 0.01
343 373 0.98
344 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (343 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAGC
CGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGATCCCCCTCTACGTCCTACCGATCC
CCCTGCCACAACCCTCGGTCCGGCTGGCACTTAGACATGCAATAAACTCCCTATGCCTAAGCCAA
CCCACGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGA
CCCGATCCCCCCCGCGTGCTGTCGATCCTACTATCGCAACCCTCGGTCCAGTCCGATCTTAGACT
GGGAATGAACTCCGTATG
Found at i:22474791 original size:26 final size:26
Alignment explanation
Indices: 22474762--22474814 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22474752 CCGGTCCGAT
*
22474762 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
22474788 CTTAGACTGGGGATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
22474814 C
1 C
22474815 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:22475975 original size:158 final size:158
Alignment explanation
Indices: 22475497--22475990 Score: 421
Period size: 158 Copynumber: 3.1 Consensus size: 158
22475487 ACTCCGTATG
* * * * *
22475497 CTTAGAAAT-GGAATGAACTCCATATGCCTAAACCAACCCATGAAACGAGCGTGCGGGTGCTTAG
1 CTTAGACATGGGAATGAACTCCATATGGCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA-
* * * * * * *
22475561 ATGATCGGAGAGGTAGAATGTGCAAGTCAAGGATCGAC-CGGGTCCCCCCTGCGTGCTGTCGATC
65 ATGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACTC-AGTCCCCCCTGCGTGCTGCCGATC
** * *
22475625 CTGCTGCCGGAACCCTCGGTCCGATCTGAT
129 CTGCTGCCACAACCCTCGGTCCGGTTTGAT
** * * * * *
22475655 CTTAGAC-TGGGAATGAACTCTGTA-AGCATAAGTCAACCCA-CAGAACGAGCGTACGGGCGCTG
1 CTTAGACATGGGAATGAACTCCATATGGC-TAAGCCAACCCATGA-AACGAGCGTGCGGGCGCTC
** * * * * * *
22475717 AGCCGGTCGAAGAGGCATAATACACAAGCCAGGGATCAGACTGA-TCCCCCTCTGCGTGCTGCTG
64 A-ATGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATC-GACTCAGTCCCCC-CTGCGTGCTGCCG
* * * * **
22475781 GTCCCGCTGCCACAA-CCTCGGTCCGGCTGGGG
126 ATCCTGCTGCCACAACCCTCGGTCCGGTTTGAT
* * * *
22475813 CTTAGACAT-GGAATGAACTCCCTATGGCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAA
1 CTTAGACATGGGAATGAACTCCATATGGCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * *
22475877 TTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCAGTCCCCCCAGCGTGCTGCCGATCC
66 -TGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACTCAGTCCCCCCTGCGTGCTGCCGATCC
* **
22475942 TGCTGCCACAACCCTCAGTTTGGTTTGAT
130 TGCTGCCACAACCCTCGGTCCGGTTTGAT
*
22475971 CTTAGA-TTGGGAATGAACTC
1 CTTAGACATGGGAATGAACTC
22475991 TGTATGCTTT
Statistics
Matches: 256, Mismatches: 67, Indels: 26
0.73 0.19 0.07
Matches are distributed among these distances:
157 33 0.13
158 194 0.76
159 29 0.11
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGGAATGAACTCCATATGGCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
TGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACTCAGTCCCCCCTGCGTGCTGCCGATCCT
GCTGCCACAACCCTCGGTCCGGTTTGAT
Found at i:22476915 original size:26 final size:26
Alignment explanation
Indices: 22476877--22476932 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
22476867 GGCTCAAAAT
22476877 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22476903 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22476929 CTTA
1 CTTA
22476933 AGCCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22477098 original size:26 final size:26
Alignment explanation
Indices: 22477060--22477112 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22477050 TTGGTCCAAT
*
22477060 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
22477086 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
22477112 C
1 C
22477113 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22477182 original size:183 final size:183
Alignment explanation
Indices: 22476874--22477269 Score: 526
Period size: 183 Copynumber: 2.2 Consensus size: 183
22476864 CGTGGCTCAA
* * * *
22476874 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCTTAAGCCAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAACCAA
* * * * * *
22476939 CCCACGAAATGAGTGTACGGGCACTCAGTCGACCGGAGAGGTAGAATGTGCAAGCCGAGGATTAG
66 CCCACGAAACGAGCGTACGGGCACTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGA-TAG
* * * * ** *
22477004 -CCC-GATCCCCCTGTGTGCTACCGATCCTACTATCGTAACCCTCGGTTTGGTCC
130 ACCCAG-CCCCCCCGTGTGCTACCGATCCTACTACCGCAACCCTCAATCTGGTCC
22477057 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAACCAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAACCAA
* * ** *
22477122 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCGA
66 CCCACGAAACGAGCGTACGGGCACTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATAGA
* * * *
22477187 CCCAGCCCCCCCGTGTGCTATCGATCCTGCTGCCGCAACCCTCAATCTGGTCT
131 CCCAGCCCCCCCGTGTGCTACCGATCCTACTACCGCAACCCTCAATCTGGTCC
22477240 AATCTTAGACTGGGAATGAACTCCGTATGC
1 AATCTTAGACTGGGAATGAACTCCGTATGC
22477270 CTAAGTCAAC
Statistics
Matches: 185, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
182 2 0.01
183 182 0.98
184 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (183 bp):
AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAACCAA
CCCACGAAACGAGCGTACGGGCACTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATAGA
CCCAGCCCCCCCGTGTGCTACCGATCCTACTACCGCAACCCTCAATCTGGTCC
Found at i:22477475 original size:159 final size:159
Alignment explanation
Indices: 22477083--22477586 Score: 472
Period size: 159 Copynumber: 3.2 Consensus size: 159
22477073 TGAACTCCGT
*
22477083 ATGCTTAGACATGGAATGAACTCCATATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTC
1 ATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * **
22477148 AGCCGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAG-CCCCC-CCGTGTGCTATCGA
66 AGCCGGTCGGAGAGGCAAAATGCGCAAGCTGGGGATCG-CCCAGTCCCCCTTAGTGTGCTATCGA
* *
22477211 TCCTGCTGCCGCAACCCTCAATCTGGTCTA
130 TCCCGCTGCCACAACCCTCAATCTGGTCTA
* * * *
22477241 AT-CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCACT
1 ATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * *
22477304 GAGCCGGTCGGAGAGGCATAATGCGCAAGCTGGGGACCAGCCCGGTCCCCCTTAGTGTGCTGTCG
65 CAGCCGGTCGGAGAGGCAAAATGCGCAAGCTGGGGATC-GCCCAGTCCCCCTTAGTGTGCTATCG
* * ** *
22477369 GTCCCGTTGCCACAACCCTTGAT-TCGG-CTG
129 ATCCCGCTGCCACAACCCTCAATCT-GGTCTA
* * * * * *
22477399 GTGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCTACCCAGGAAAC-AGGCATGTGGGCGCT
1 ATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCT
* * * * **
22477463 CAGCTGGGCGGAGAAGCAAAATGCACAAGCTGGGGATCGGCCCAGTCCCCCTT-GCATGCTATCG
65 CAGCCGGTCGGAGAGGCAAAATGCGCAAGCTGGGGATC-GCCCAGTCCCCCTTAGTGTGCTATCG
** ** * * *
22477527 ATCCTACTGCCGTAACCCTCGATCCGGTCTG
129 ATCCCGCTGCCACAACCCTCAATCTGGTCTA
*
22477558 AT-CTT--ACATTGGGAATGAACTCCGTATGC
1 ATGCTTAGACA-T-GGAATGAACTCCATATGC
22477587 TTAGACTGGG
Statistics
Matches: 281, Mismatches: 53, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
156 4 0.01
157 91 0.32
158 59 0.21
159 126 0.45
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
ATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
AGCCGGTCGGAGAGGCAAAATGCGCAAGCTGGGGATCGCCCAGTCCCCCTTAGTGTGCTATCGAT
CCCGCTGCCACAACCCTCAATCTGGTCTA
Found at i:22477589 original size:26 final size:26
Alignment explanation
Indices: 22477560--22477612 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22477550 CCGGTCTGAT
*
22477560 CTTACATTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
22477586 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
22477612 C
1 C
22477613 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:22478518 original size:26 final size:26
Alignment explanation
Indices: 22478467--22478519 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22478457 CTGGTCCGAT
*
22478467 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
22478493 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
22478519 C
1 C
22478520 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22479117 original size:11 final size:11
Alignment explanation
Indices: 22479103--22479139 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
22479093 GCTCTCCGGC
22479103 GATGCTCCGAT
1 GATGCTCCGAT
*
22479114 GATGCTCTGAT
1 GATGCTCCGAT
*
22479125 GATGCTCCGAC
1 GATGCTCCGAT
22479136 GATG
1 GATG
22479140 GTGCCCCGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.19, C:0.24, G:0.30, T:0.27
Consensus pattern (11 bp):
GATGCTCCGAT
Found at i:22479247 original size:26 final size:26
Alignment explanation
Indices: 22479209--22479261 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22479199 GGCTCAAACT
22479209 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22479235 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22479261 C
1 C
22479262 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22479472 original size:908 final size:899
Alignment explanation
Indices: 22477400--22479412 Score: 2486
Period size: 908 Copynumber: 2.2 Consensus size: 899
22477390 ATTCGGCTGG
* * * * ** *
22477400 TGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCTACCCAGGAAAC-AGGCATGTGGGCGCTC
1 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTACGGGCACTC
** * * * * * * * * *
22477464 AGCTGGGCGGAGAA-GCAAAATGCACAAGCTGGGGATCGGCCC-AGTCCCCCTTGCATGCTATCG
65 AGCCAGCCAGA-AAGGCAGAATACGCAAGCCGGGGATCGACCCGA-TCCCCC-TGCATGCTACCA
* * * * * ** ** *
22477527 ATCCTACTGCCGTAACCCTC-GATCCGGTCTGATCTTACATTGGGAATGAACTCCGTATGCTTAG
127 ATCCTACTACCGTAACCCTCAG-GCCGGTCCGATCTTAGACTACGAATGAACTCTATATGCATAG
* * * *** * ** *
22477591 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGA-C
191 A----GGATGAACTCCG-A--CCAAAATCAACCCA--CAACGAGCGTGCAACCGATCAGAAGAGG
* * * *
22477655 CAGAGAGGTAGGATGCGCAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACGTCTTCAT
247 CAAAGAGGTAGGATGCGCAAGCCGAGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTACAT
*
22477720 ATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCA
312 ATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCCTAAGCCTTCA
* ** *
22477785 TGTGAAGTTTCGTGGCAAGACAACCTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT
377 TGTGAAGTTTCATGGCAAGACAACCTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATT
*
22477850 TGGGATTTTTTAAAATTTTTTTAAAAAGAGTTTTGTCCCCAAAATTTGGTAGAGGTGATCCTTTT
442 TGGGATTTTTTAAAATTTTTTTAAAAAGAGTTTTGTCCCCAAAATTTGGTAGAGGTGATCCTTGT
* * *
22477915 ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGTGACCGT
507 ATTTTTGTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAAATTTTGTGACCGT
* *
22477980 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAGTGGCAGCAAACCTATAAAATCTCAA
572 TTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAA
*
22478045 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
637 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCA
22478110 AGTACCAGCACCCATCGCACATCATGTGCCACACCCCCCCGGCCACCCCAATCCCCGGAAACCCC
702 AGTACCAGCACCCATCGCACATCATGTGCCACACCCCCCCGGCCACCCCAATCCCCGGAAACCCC
* * ** *
22478175 AATGCCGCCGGTTAGGCTCTCCAGCGATGCTCCGACGATGGTGCCTCGGGTGAAAATAATGTAGC
767 AATGCCACCGGTTAGGCTCTCCAGCGATGCTCCGACGATGGTGCCCCGGGCAAAAAAAATGTAGC
*
22478240 ACCAGCACATGCCTGAGCCCAGAATGTGCACCGTGGCTCAAAATTTTAGACTGGGAATGAACTCC
832 ACCAGCACATGCCTGAGCCCAGAATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAACTCC
22478305 ACA
897 ACA
22478308 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
1 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
* * * *
22478373 GCCAGCCAGAAAGGCAGAATACGCAAGCCGGGGATCGGCCTGGTCCCCCTGCATGCTGCCAATCC
66 GCCAGCCAGAAAGGCAGAATACGCAAGCCGGGGATCGACCCGATCCCCCTGCATGCTACCAATCC
* * ** *
22478438 TACTACTGTAACCCTCAGGCTGGTCCGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGG
131 TACTACCGTAACCCTCAGGCCGGTCCGATCTTAGACTACGAATGAACTCTATATGCATAGA----
* * ** * *
22478503 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCAGAGGCAAAG
192 GGATGAACTCCG-A--CCAAAATCAACCCAC--AACGAGCGTGCAACCGATCAGAAGAGGCAAAG
**
22478568 AGGTAGGATGCGCAAGCCGAGGATCGAATTGGTGGTAGGTGGGTTCAAGCACATCTACATATTTC
252 AGGTAGGATGCGCAAGCCGAGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTACATATTTC
* *
22478633 TGCCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCGTAAGCCTTCATGTGA
317 TGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCCTAAGCCTTCATGTGA
* * *
22478698 AGTTTTATGGCAAGACGACCTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGATTTGGGA
382 AGTTTCATGGCAAGACAACCTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTTGGGA
*
22478763 TTTTTT-AAA-TTTTTTAGAAAGAGTTTTGTCCCC-AAATTTGGTAGAGGTGATCCTTGTATTTT
447 TTTTTTAAAATTTTTTTAAAAAGAGTTTTGTCCCCAAAATTTGGTAGAGGTGATCCTTGTATTTT
*
22478825 TGTTGGCAAGCACAAAAAAATTTAGCTAAAAACTCAAAGTGGAGAAAATTTTGTGACCGTTTGAA
512 TGTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAAATTTTGTGACCGTTTGAA
22478890 AAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCT
577 AAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCT
* *
22478955 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG-TGGATAGGGAGCCAATATAAGGGCCAAGTAC
642 CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTAC
* **
22479019 CAGCACCCATCGCACATCATGTGCGCACA-CCCCCTGGCC-CCCCAATCGTCGG-AACCCTCAAT
707 CAGCACCCATCGCACATCATGTGC-CACACCCCCCCGGCCACCCCAATCCCCGGAAACCC-CAAT
22479081 GCCACCGGTTAGGCTCTCCGGCGATGCTCCGATGATGCTCTGATGATGCTCCGACGATGGTGCCC
770 GCCACCGGTTA--------GGC--T-CTCC----A-G--C----GATGCTCCGACGATGGTGCCC
* * * *
22479146 CGGGCAAAAAAAATGTGGCACCAGCACATGCTTGAGCCCAGCATGTGCACCGTGGCTCAAACTCT
813 CGGGCAAAAAAAATGTAGCACCAGCACATGCCTGAGCCCAGAATGTGCACCGTGGCTCAAAATCT
**
22479211 TAGACTGGGAATGAACTCCGTA
878 TAGACTGGGAATGAACTCCACA
** **
22479233 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCA
1 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
* * * * * ** * *
22479298 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCCTGTGTGCTATCGAT
66 GCCAGCCAGAAAGGCAGAATACGCAAGCCGGGGATCGACCCGAT--CCCCCTGCATGCTACCAAT
* * *
22479363 CCTGCTGCCGTAACCCTC-GGTCCGGTCTGATCTTAGACTACGAATGAACT
129 CCTACTACCGTAACCCTCAGG-CCGGTCCGATCTTAGACTACGAATGAACT
22479413 TCGTATGCAT
Statistics
Matches: 972, Mismatches: 99, Indels: 49
0.87 0.09 0.04
Matches are distributed among these distances:
902 5 0.01
903 25 0.03
904 62 0.06
905 188 0.19
906 23 0.02
907 125 0.13
908 282 0.29
909 1 0.00
911 3 0.00
913 1 0.00
914 4 0.00
918 1 0.00
919 1 0.00
921 1 0.00
925 194 0.20
926 2 0.00
927 54 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
GCCAGCCAGAAAGGCAGAATACGCAAGCCGGGGATCGACCCGATCCCCCTGCATGCTACCAATCC
TACTACCGTAACCCTCAGGCCGGTCCGATCTTAGACTACGAATGAACTCTATATGCATAGAGGAT
GAACTCCGACCAAAATCAACCCACAACGAGCGTGCAACCGATCAGAAGAGGCAAAGAGGTAGGAT
GCGCAAGCCGAGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTACATATTTCTGCCATGCC
AATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCCTAAGCCTTCATGTGAAGTTTCATG
GCAAGACAACCTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTTGGGATTTTTTAAA
ATTTTTTTAAAAAGAGTTTTGTCCCCAAAATTTGGTAGAGGTGATCCTTGTATTTTTGTTGGCAA
GCACAAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAAATTTTGTGACCGTTTGAAAAAAGTGTC
CCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGG
GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCA
TCGCACATCATGTGCCACACCCCCCCGGCCACCCCAATCCCCGGAAACCCCAATGCCACCGGTTA
GGCTCTCCAGCGATGCTCCGACGATGGTGCCCCGGGCAAAAAAAATGTAGCACCAGCACATGCCT
GAGCCCAGAATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAACTCCACA
Found at i:22479632 original size:160 final size:159
Alignment explanation
Indices: 22479234--22479738 Score: 457
Period size: 160 Copynumber: 3.2 Consensus size: 159
22479224 AACTCCGTAT
* * *
22479234 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * *
22479299 CCGG-TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCCTGTGTGCTATCGAT
66 -CGGATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGATCCCCCCCTGTGTGCTACCGAT
* ** *
22479363 CCTGCTGCCGTAACCCTCGGTCCGGTCTGA
130 CCCGCTGCCACAACCCTCGATCCGGTCTGA
* * * * ** * * * *
22479393 TCTTAGAC-TACGAATGAACTTCGTATGCATAAGTTAACCCACAAAATGAGCGTACAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * ** * * * *
22479457 ACCGATCGAAGAGGCATAATGCGCAAGTTGAGGATCGGCCCGGTCCCCCTCTGGTGTGCTGCC-A
65 GCGGATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGATCCCCCCCT-GTGTGCTACCGA
* *
22479521 GTCCCGCTGCCACAACCCTCGATCTGG-CTGGG
129 -TCCCGCTGCCACAACCCTCGATCCGGTCT-GA
* * * *
22479553 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * *
22479618 CGGATTGGAGAGGCAAAATGCACAAGCCGGGGTTCAACCC-AGT-CCCCCTTGCGTGCTACCGAT
66 CGGATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGA-TCCCCCCCTGTGTGCTACCGAT
* * * *
22479681 CCTGCTACCGCAACCCTCGATCCGGTATGA
130 CCCGCTGCCACAACCCTCGATCCGGTCTGA
* *
22479711 TCTTAGAC-TGGGAATGAACTCAGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
22479739 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 70, Indels: 21
0.75 0.20 0.06
Matches are distributed among these distances:
157 1 0.00
158 57 0.21
159 98 0.37
160 109 0.41
161 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CGGATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGATCCCCCCCTGTGTGCTACCGATC
CCGCTGCCACAACCCTCGATCCGGTCTGA
Found at i:22479743 original size:26 final size:26
Alignment explanation
Indices: 22479712--22479764 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22479702 CCGGTATGAT
22479712 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
* *
22479738 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
22479764 C
1 C
22479765 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:22481178 original size:26 final size:26
Alignment explanation
Indices: 22481140--22481192 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22481130 GGCTCAAAAT
22481140 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
22481166 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
22481192 C
1 C
22481193 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:22481667 original size:158 final size:156
Alignment explanation
Indices: 22481166--22481667 Score: 497
Period size: 158 Copynumber: 3.2 Consensus size: 156
22481156 ACTCCATATG
* * * * * *
22481166 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTATAGGCACCCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGC
* ** * *
22481231 CGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGATCTGGTCCCCCCTGCATGCTGTCGATCCT
66 CGATC-GAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCCTGCGTGCTATCGATCCT
* * *
22481296 GCT-ACGGCAACCCTCAATCCGATCCTGT
130 GCTGAC-ACAACCCTCGATCCGGTCC-GT
** * * * * *
22481324 CTTAGAC-TGGGAATGAACTCCATATGTATAAGTCAACCCGCGAAACGAGCATACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAG
* * * * * * * *
22481388 CCGGTCGAAGAGGCATAATACGCAAGTCGGGGATCAGCCCGATCCCCCTCTGTGTGCTACCGATC
65 CCGATCG-AGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCC-CTGCGTGCTATCGATC
* * ** *
22481453 CCGCTGCCACAACCCTCGATCCGGCTGGGG
128 CTGCTGACACAACCCTCGATCCGG-TCCGT
* * * *
22481483 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGC
* * * *
22481548 CGATCAGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCTGGTCCCCCCTGCGTGCTTTCGATCCT
66 CGATC-GAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCCTGCGTGCTATCGATCCT
* *
22481613 GCTGTCACAACCCTCGGTCCGGTCCGAT
130 GCTGACACAACCCTCGATCCGGTCCG-T
22481641 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCATATGC
22481668 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 64, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 5 0.02
158 144 0.53
159 118 0.44
160 4 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGC
CGATCGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCCTGCGTGCTATCGATCCTG
CTGACACAACCCTCGATCCGGTCCGT
Found at i:22482333 original size:26 final size:26
Alignment explanation
Indices: 22482296--22482345 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
22482286 GCTCAAAATC
*
22482296 TTAGACTAGGAATCAACTCTGTATAT
1 TTAGACTAGGAATCAACTCCGTATAT
*
22482322 TTAGAC-ATGGAATGAACTCCGTAT
1 TTAGACTA-GGAATCAACTCCGTAT
22482346 GCCTAAGCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 20 0.95
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (26 bp):
TTAGACTAGGAATCAACTCCGTATAT
Found at i:22482811 original size:26 final size:26
Alignment explanation
Indices: 22482782--22482834 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22482772 CTGGTTCGAT
*
22482782 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
22482808 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22482834 C
1 C
22482835 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22483691 original size:26 final size:26
Alignment explanation
Indices: 22483662--22483714 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22483652 CCAGTTCAAT
22483662 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* * *
22483688 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
22483714 C
1 C
22483715 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:22483899 original size:26 final size:26
Alignment explanation
Indices: 22483870--22483922 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22483860 CTGATCCGAT
*
22483870 CTTAGACCGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCTGTATG
* *
22483896 CTTAGACATGGAATGAACTTTGTATG
1 CTTAGACAGGGAATGAACTCTGTATG
22483922 C
1 C
22483923 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCTGTATG
Found at i:22484340 original size:708 final size:709
Alignment explanation
Indices: 22483070--22484396 Score: 1715
Period size: 707 Copynumber: 1.9 Consensus size: 709
22483060 CTGGAGAGGC
* * * **
22483070 AGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTATGTGCTATCGATCCTGCTGTTGCTCCTG
1 AGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCGGCTCCTG
* *
22483135 CTACCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAAACATGGA
66 CTACCGCAACCCTCAGTCCAGTCCAATCTTAGACCGGGAATGAACTCCGTATGCTTAAACATGGA
* * * *
22483200 ATGAACTCCGTATGCCTAAGCCAACTCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGG
131 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAACCGATCGAAGAGG
* * ***
22483265 CAGAATGCGCAAGTCGGAGATCGGCCCGGTCCCTCTCTGCGTGCTATCGATCTTGCTGTGTAACC
196 CAGAATGCGCAAGCCGGAGATCGGCCCGGTCCCTCCCTGCGTGCTATCGATCTTGCTGCACAACC
* * * *
22483330 CTCGGTCCGGTCTGATCTTTGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAG
261 CTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAG
* * * * * * *
22483395 CGTACGGGCGTTGAGCTAGCCGGAGAGGCATAATACGCAAGCCGGGGATCGATCGGGTCACCCTT
326 CGTACGGACGCTGAGCGAGCCGGAGAGGCATAATACGCAAGCCGGGGATCGACCCGATCACCCTC
** ** * *
22483460 TATGTGCTGTCAATCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTC
391 TACATGCTACCAATCCCGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTC
* *
22483525 CCTATGCCTAAGCCAACCAATGAAACGGGCGTGTAGGCGCTCAGCCAGCCGGAGAGGCAGAATGC
456 CCTATGCCTAAGCCAACCAACGAAACGGGCGTGTAGGCACTCAGCCAGCCGGAGAGGCAGAATGC
* * * *
22483590 ACAAGCCGAGGATTGGCCCGGTCCCCCTACGTGCTGTCGATCCTACTGTCGTAACCCTCGATCCA
521 ACAAGCCGAGGATCGACCCGATCCCCCTACGTGCTGTCGATCCTACTGTCGCAACCCTCGAT-CA
22483655 G-TTCAATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
585 GATTCAATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
22483719 GTCAACCCATGAAACGAGCATGTGAGCACTCAGCCAACCGGAGAGGCTGACCGAAAAGGT
650 GTCAACCCATGAAACGAGCATGTGAGCACTCAGCCAACCGGAGAGGCTGACCGAAAAGGT
* * * *
22483779 AGAATGCACAAGTCGGGGATCGACCCGGT-CCCCCTACGTGCT-GCTGGTCCTGCTGCGGGTCCT
1 AGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTATC-GATCCTGCTGCGGCTCCT
* * * * *
22483842 GCTACCTCAACCCTCAGT-CTGATCCGATCTTAGACCGGGAATGAACTCTGTATGCTTAGACATG
65 GCTACCGCAACCCTCAGTCCAG-TCCAATCTTAGACCGGGAATGAACTCCGTATGCTTAAACATG
** * * *
22483906 GAATGAACTTTGTATGCCTAAGCTAACCCACGAAACGAGCGTGCTAGCACTCAGCC-AGTCGAAG
129 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAACCGA-TCGAAG
* * * * *
22483970 AGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCC-CCCTG-GTGCTGTTGATCTTGCTGCCAC
193 AGGCAGAATGCGCAAGCCGGAGATCGGCCCGGTCCCTCCCTGCGTGCTATCGATCTTGCTG-CAC
* * *
22484033 AACTCTTGGTCTGATCCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
257 AACCCTCGGTCCGAT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
** * ** * *
22484097 AGGAGCGTTTGGACGCTGAGCCGA-CTGGAGAGGCATAATGTGCAAGCTGGGGATCGGCCCGATC
321 AGGAGCGTACGGACGCTGAG-CGAGCCGGAGAGGCATAATACGCAAGCCGGGGATCGACCCGATC
* * ** * *
22484161 CCCCTCTGCATGCTACCGGTCCCGCTACCACAACCCTCAGTTCGGCTGGGGCTTAGACATGGAAT
385 ACCCTCTACATGCTACCAATCCCGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAAT
* * *
22484226 GAACTCCCTATGCCTAAGCCAACCCACGAAATGGGC--GTACGAGCACTCAGCCAGCTGGAGAGG
450 GAACTCCCTATGCCTAAGCCAACCAACGAAACGGGCGTGTA-G-GCACTCAGCCAGCCGGAGAGG
* * * *
22484289 CAGAATGGACAAGTCGGGGATCGACCCGATCCCCCT-CGCATGCTGTCGATCCTGCTGTCGCAAC
513 CAGAATGCACAAGCCGAGGATCGACCCGATCCCCCTACG--TGCTGTCGATCCTACTGTCGCAAC
* * *
22484353 CCTCGATCTGATTCGATCTTACACTGGGAATGAACTCCGTATGC
576 CCTCGATCAGATTCAATCTTACACTGGGAATGAACTCCATATGC
22484397 CTAAGTTAAC
Statistics
Matches: 523, Mismatches: 84, Indels: 23
0.83 0.13 0.04
Matches are distributed among these distances:
705 3 0.01
706 19 0.04
707 246 0.47
708 229 0.44
709 26 0.05
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (709 bp):
AGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCGGCTCCTG
CTACCGCAACCCTCAGTCCAGTCCAATCTTAGACCGGGAATGAACTCCGTATGCTTAAACATGGA
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAACCGATCGAAGAGG
CAGAATGCGCAAGCCGGAGATCGGCCCGGTCCCTCCCTGCGTGCTATCGATCTTGCTGCACAACC
CTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAG
CGTACGGACGCTGAGCGAGCCGGAGAGGCATAATACGCAAGCCGGGGATCGACCCGATCACCCTC
TACATGCTACCAATCCCGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTC
CCTATGCCTAAGCCAACCAACGAAACGGGCGTGTAGGCACTCAGCCAGCCGGAGAGGCAGAATGC
ACAAGCCGAGGATCGACCCGATCCCCCTACGTGCTGTCGATCCTACTGTCGCAACCCTCGATCAG
ATTCAATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
TCAACCCATGAAACGAGCATGTGAGCACTCAGCCAACCGGAGAGGCTGACCGAAAAGGT
Found at i:22484468 original size:158 final size:157
Alignment explanation
Indices: 22484042--22484470 Score: 393
Period size: 158 Copynumber: 2.7 Consensus size: 157
22484032 CAACTCTTGG
* * * *
22484042 TCTGATCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTTT
1 TCTGATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCG-TA
* * * *
22484107 GGACGCTGAGCCGACTGGAGAGGCATA-ATGTGCAAGCTGGGGATCGGCCCGATCCCCCTCTGCA
65 CGACGCTCAG-CGACTGGAGAGGCA-AGATG-GCAAGCCGGGGATCGACCCGATCCCCCTCTGCA
* *
22484171 TGCTACCGGTCCCGCTACCACAACCCTCAGT
127 TGCTACCGATCCCGCTACCACAACCCTCAGA
** * ** * * *
22484202 TC-GGCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTA
1 TCTGATTCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTA
* * *
22484265 CGAGCACTCAGCCAGCTGGAGAGGC-AGAATGGACAAGTCGGGGATCGACCCGATCCCCCTC-GC
65 CGA-CGCTCAGCGA-CTGGAGAGGCAAG-ATGG-CAAGCCGGGGATCGACCCGATCCCCCTCTGC
** * ** *
22484328 ATGCTGTCGATCCTGCTGTCGCAACCCTC-GA
126 ATGCTACCGATCCCGCTACCACAACCCTCAGA
* * * *
22484359 TCTGATTCGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCATGC
1 TCTGATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTAC
** **
22484424 AGACGCTCAGTCGACCAGAGAGGCAAGATGCGCAAGCCACGGATCGA
66 -GACGCTCAG-CGACTGGAGAGGCAAGATG-GCAAGCCGGGGATCGA
22484471 AAGGGTGGTA
Statistics
Matches: 211, Mismatches: 46, Indels: 26
0.75 0.16 0.09
Matches are distributed among these distances:
157 5 0.02
158 107 0.51
159 96 0.45
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
TCTGATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTAC
GACGCTCAGCGACTGGAGAGGCAAGATGGCAAGCCGGGGATCGACCCGATCCCCCTCTGCATGCT
ACCGATCCCGCTACCACAACCCTCAGA
Found at i:22485396 original size:26 final size:26
Alignment explanation
Indices: 22485367--22485419 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22485357 CCGATTAGAT
*
22485367 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
22485393 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22485419 C
1 C
22485420 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22486103 original size:26 final size:26
Alignment explanation
Indices: 22486062--22486114 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22486052 TCTGGTTGAT
*
22486062 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22486088 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
22486114 C
1 C
22486115 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22486446 original size:699 final size:694
Alignment explanation
Indices: 22485050--22486788 Score: 1997
Period size: 699 Copynumber: 2.5 Consensus size: 694
22485040 ACTCCGTATG
* * ** ** * * ** *
22485050 CTTAGACAT-GGAATGAACTCCTTATGGCTAAGCCAACCCATAAAAAGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAATCAACCCACGAAACGAGCATATGGGCGCTGAG
* * * * * * * * *
22485114 CCGATCGGAGAGGCAGAATGCCCAAGCCGGGGATTG-GCCTAGTCCACCTCTGCGTGCTGTCAGT
65 CCGACCGAAGAGGCATAATGCGCAAGCC-GGGATCGACCCGA-TCCCCCTCTGCGTGCTGTCGGT
* *
22485178 CCCGCTACCATAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
128 CCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * * *
22485243 AACCCACGAAACAGGCGTGCA-AGCACCCAATCGG-CTGGAGAGGTAGAATGCGTAAGCCGGGGA
193 AACCCACGAAA-AGG-GTGTACGGCACTCAGTCGGCCT-GAGAGGCAGAATGCGCAAGCCGGGGA
** * * * * * * *
22485306 TCAACGCAGTCCCCCTTGCGTGCTG-CAGATCTTGCT-ACCACAACCCTCGATCCGATTAGATCT
255 TCGGCCCGGTCCCCCTTGCGTGCTGTC-GATCCTACTGTCGA-AACCCTCGATCCGGTT-GATCT
* * * *
22485369 TAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCAC
317 TAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCATAAGTCAACCCAC
* * * * *
22485434 GAAATGAGTGTGCGGGCACTCAGCCGACTAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGA
382 GAAACGAGTGTACGGGCAATCAGCCGACCAGAGAGGCAGAATGCATAAGCCGGGGATCGACCCGA
* * * ** *
22485499 TCCCCCCTACGTGCTACCGATCCTGCTATTGGTCCTGCTGTCGTAACCTTCGATCCGGTCCGATC
447 TCCCCCCTACGTGCTACCGATCCTACTACTGGTCCTGCTGCCACAACATTCGATCCGGTCCGATC
* * * *
22485564 TTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCG
512 GTAGACTGGGAATGAACTCCAGATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* ** * * * **
22485629 TGAAACGAGCGTGCAGGTGCTTAGCCGACCGAAAAGGTAGAATGCACAAGTCGGGGACCGACCTG
577 CGAAACGAGCGTGCAGGCACTCAGCCGACCGAAAAGGCAGAATGCACAAGCCGGGGACCGACCCA
* * * * *
22485694 GTCCCCCCTACGTGCTGTCGATCTTGCTGCCACAACCTTCGGTCCGGTCTGAT
642 GTCCCCCCTACGTGCTGTCAATCCTGCTACCACAACCCTCGGTCCAGTCTGAT
* * * *
22485747 CTTAGATTGGGAATGAACTTCGTATGCCTAAATCAACCCACGAAACGAGCAT-TCGGGGGCTGAG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAATCAACCCACGAAACGAGCATAT-GGGCGCTGAG
* * * * * * *
22485811 CTGGCCGAAGAGGCATAATGTGCAAGCTGGGGATCGACCCGGTCCCTCTTTGCGTGCTGTCGGTC
65 CCGACCGAAGAGGCATAATGCGCAAGC-CGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTC
* * **
22485876 CCGCTACCACAACCGTCGGTTCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
129 CCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * *
22485941 ACCCATGAAATGGGTGTACGGACACTCAGTCGGCCTGAGAGGCAGAATGCACAACCCAGGGATCG
194 ACCCACGAAAAGGGTGTACGG-CACTCAGTCGGCCTGAGAGGCAGAATGCGCAAGCCGGGGATCG
* * * *
22486006 GCCCGGTCCCCC-TGCATGCTGTCGATCCAACTGTCGAAACCCTCGGTCTGGTTGATCTTAGACT
258 GCCCGGTCCCCCTTGCGTGCTGTCGATCCTACTGTCGAAACCCTCGATCCGGTTGATCTTAGACT
*
22486070 GGGAATGAACTTCGTATGCTTAGACTAGGGATGAACTCCGTATGCATAAGTCAACCCACGAAACG
323 GGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCATAAGTCAACCCACGAAACG
* * * * * * *
22486135 AGTGTACGGGTAATCAGTCGGCCGGAGAGGCATAATGCATAAGCCGGGGATC-AGCTCGGTCCCC
388 AGTGTACGGGCAATCAGCCGACCAGAGAGGCAGAATGCATAAGCCGGGGATCGA-CCCGATCCCC
* * ** * ** *
22486199 CTCTATGTGTTGTCGATCCTACTACTGGTCCTGCTGCCACAACATTC-AGTTCGGCTGGGGCTCC
452 C-CTACGTGCTACCGATCCTACTACTGGTCCTGCTGCCACAACATTCGA-TCCGG-T-CCGAT-C
22486263 GTATG-CTGGGAATGAACTCCAGATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
512 GTA-GACTGGGAATGAACTCCAGATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * ** *
22486327 ACGAAACGAGCGTGCAGGCACTCAGCCGGCTGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCC
576 ACGAAACGAGCGTGCAGGCACTCAGCCGACCGAAAAGGCAGAATGCACAAGCCGGGGACCGACCC
* *
22486392 AGTCCCCCCTGCGTGCTGTCAATCCTGCTACCACAACCCTCGGTCTAGTCTGAT
641 AGTCCCCCCTACGTGCTGTCAATCCTGCTACCACAACCCTCGGTCCAGTCTGAT
* *
22486446 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAATCAACCCACGAAACGAGCATATGGGCGCTGAGC
* * * *
22486511 CGACCGGAGAGGCATAATGCGTAAGCCGGGATCGACTCGATCCCCCTCTACGTGCTGTCGGTCCC
66 CGACCGAAGAGGCATAATGCGCAAGCCGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCC
* *
22486576 GCTACCACAACCCTTGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
131 GCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * ** * * *
22486641 CCACGAAACGGGCGTGCGGGCTTTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC
196 CCACGAAAAGGGTGTAC-GGCACTCAGTCGGCCTGAGAGGCAGAATGCGCAAGCCGGGGATCGGC
* *
22486706 CCGGTCCCCCTTGCGTGCTATCGATCCTACTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTG
260 CCGGTCCCCCTTGCGTGCTGTCGATCCTACTGTCGAAACCCTCGATCCGGT-TGATCTTAGACTG
22486771 GGAATGAACTCCGTATGC
324 GGAATGAACTCCGTATGC
22486789 CTAAGTCAAC
Statistics
Matches: 865, Mismatches: 157, Indels: 37
0.82 0.15 0.03
Matches are distributed among these distances:
694 1 0.00
695 127 0.15
696 70 0.08
697 206 0.24
698 158 0.18
699 271 0.31
700 32 0.04
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (694 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAATCAACCCACGAAACGAGCATATGGGCGCTGAGC
CGACCGAAGAGGCATAATGCGCAAGCCGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCC
GCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAAAGGGTGTACGGCACTCAGTCGGCCTGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC
CGGTCCCCCTTGCGTGCTGTCGATCCTACTGTCGAAACCCTCGATCCGGTTGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGT
GTACGGGCAATCAGCCGACCAGAGAGGCAGAATGCATAAGCCGGGGATCGACCCGATCCCCCCTA
CGTGCTACCGATCCTACTACTGGTCCTGCTGCCACAACATTCGATCCGGTCCGATCGTAGACTGG
GAATGAACTCCAGATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG
CGTGCAGGCACTCAGCCGACCGAAAAGGCAGAATGCACAAGCCGGGGACCGACCCAGTCCCCCCT
ACGTGCTGTCAATCCTGCTACCACAACCCTCGGTCCAGTCTGAT
Found at i:22486580 original size:158 final size:157
Alignment explanation
Indices: 22486288--22486839 Score: 655
Period size: 158 Copynumber: 3.5 Consensus size: 157
22486278 ACTCCAGATG
* *
22486288 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
22486353 CGGCTGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCCAGTCCCCC-CTGCGTGCTGTCAATCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCGA-TCCCCCTCTGCGTGCTGTCGATCC
*
22486417 TGCTACCACAACCCTCGGTCTAGTCTGAT
130 TGCTACCACAACCCTCGATC-AGTCTGAT
* * ** *
22486446 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
22486510 CCGACCGGAGAGGCATAATGCGTAAGCC-GGGATCGACTCGATCCCCCTCTACGTGCTGTCGGTC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGAC-CGATCCCCCTCTGCGTGCTGTCGATC
* * * * **
22486574 CCGCTACCACAACCCTTGATCCGACTGGGG
129 CTGCTACCACAACCCTCGATCAGTCT-GAT
* * **
22486604 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCTTTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
22486669 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCT-TGCGTGCTATCGATCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GACCGATCCCCCTCTGCGTGCTGTCGATCC
* ** * *
22486733 TACTGTCGCAACCCTCGATCCGGTCTGAT
130 TGCTACCACAACCCTCGAT-CAGTCTGAT
* *
22486762 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
22486826 CCGACCGGAGAGGC
65 CCGACCGGAGAGGC
22486840 TGATCGAAAA
Statistics
Matches: 330, Mismatches: 55, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
157 20 0.06
158 288 0.87
159 20 0.06
160 2 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCGATCCCCCTCTGCGTGCTGTCGATCCT
GCTACCACAACCCTCGATCAGTCTGAT
Found at i:22487154 original size:26 final size:26
Alignment explanation
Indices: 22487116--22487168 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22487106 CTGGTCCGAT
*
22487116 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
22487142 CTTAGAC-ATGGAATGGACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
22487168 C
1 C
22487169 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22488702 original size:26 final size:26
Alignment explanation
Indices: 22488673--22488729 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
22488663 CCAGTCCGAT
22488673 CTTAGACTAGAAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
** *
22488699 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
22488725 CTTAG
1 CTTAG
22488730 CGTGCGGGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTATG
Found at i:22489161 original size:26 final size:26
Alignment explanation
Indices: 22489123--22489175 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22489113 TGCTCAAACT
**
22489123 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACCAGGAATGAACTCCATATG
*
22489149 CTTAGACCAGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCATATG
22489175 C
1 C
22489176 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCATATG
Found at i:22489796 original size:26 final size:26
Alignment explanation
Indices: 22489758--22489807 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
22489748 GTTAGATCTT
22489758 AGACTGGGAATGAACTCCGTATGCTC
1 AGACTGGGAATGAACTCCGTATGCTC
* * *
22489784 AGACTGGGGATGAATTTCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
22489808 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTC
Found at i:22490402 original size:158 final size:156
Alignment explanation
Indices: 22489977--22490404 Score: 405
Period size: 158 Copynumber: 2.7 Consensus size: 156
22489967 AACTTCGTAT
* * * *
22489977 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG-AACGAGCGTGCGGGCGTTCAA
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
22490041 CCGATCAGAGAGGTAGAATGCACAAGCCGTGGATTGACCTGATCCCCCCTGCGTGCTATCGATCC
65 CCGATCGGAGAGGTAGAATGCGCAAGCAGGGGATCGACCTG-TCCCCCCTACGTGCTATCGATCC
** *
22490106 TGCTGCAGCAACCCTCAGTCCGGCCCGA
129 CACTGCAGCAACCATCAGTCCGGCCCGA
* * * * *
22490134 TCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACAAAACGAGCGCT-CGGGCGCTGA
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCG-TGCGGGCGCTCA
* * * * * * *
22490198 GCCAATCGGAGAGGCATAATGCGCAAGTCA-GGGATCGGCCCGGTCCCCCCTACGTGCTGTCGGT
64 GCCGATCGGAGAGGTAGAATGCGCAAG-CAGGGGATC-GACCTGTCCCCCCTACGTGCTATCGAT
* * * ** *
22490262 CCCATTGCCA-CAACCATCGGTTCGGCTGGG
127 CCCACTG-CAGCAACCATCAGTCCGGCCCGA
* * *
22490292 GCTTAGACTTGGAATGAACTCCTTATGCCTAAGCGAACCCACGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
22490357 TCGGTCGGAGAGGTAGAATACGCTAGCAGGGGATCGACTCTGTCCCCC
65 CCGATCGGAGAGGTAGAATGCGCAAGCAGGGGATCGAC-CTGTCCCCC
22490405 TGCATGCTGC
Statistics
Matches: 213, Mismatches: 49, Indels: 17
0.76 0.18 0.06
Matches are distributed among these distances:
157 42 0.20
158 163 0.77
159 8 0.04
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (156 bp):
GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGTAGAATGCGCAAGCAGGGGATCGACCTGTCCCCCCTACGTGCTATCGATCCCA
CTGCAGCAACCATCAGTCCGGCCCGA
Found at i:22492222 original size:26 final size:26
Alignment explanation
Indices: 22492181--22492233 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22492171 CCAGTTTGAT
22492181 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22492207 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
22492233 C
1 C
22492234 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22492419 original size:26 final size:26
Alignment explanation
Indices: 22492390--22492440 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
22492380 CCGGTCCGAT
22492390 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
22492416 CTTAGACATGGAATGAACTCTGTAT
1 CTTAGACATGGAATGAACTCCGTAT
22492441 CCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22492889 original size:26 final size:26
Alignment explanation
Indices: 22492860--22492910 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
22492850 TCGGTCCGAT
22492860 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
22492886 CTTAGACATGGAATGAACTCTGTAT
1 CTTAGACATGGAATGAACTCCGTAT
22492911 CCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22493178 original size:159 final size:159
Alignment explanation
Indices: 22492416--22493381 Score: 524
Period size: 159 Copynumber: 6.1 Consensus size: 159
22492406 ACTCCGTATG
* * * * *
22492416 CTTAGACATGGAATGAACTCTGTATCCCTAAGCCAACCCATGAAATGAGTG-TGCGGGCGCTCAA
1 CTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCATGAAATAAGTGCTGCGAGCGCTC-A
* * * * * * * * * *
22492480 GCTGACCGGAGAGGCAGAATGTGCAAG-CTAGGGATAGGCTCGGTCCCGTCTTACGTGCTGTCAA
65 GCCGATCGGAGAGGCAGAATGCGTAAGCCGA-GGATCGGCTCGATCCCCTC-TGCGTGCTGTCGA
*
22492544 TCCTGCTGTAGCAACCCTCGATCTAGTCCAAT
128 TCCTGCTGTAGCAACCCTCGATCCAGTCCAAT
* * ** * *
22492576 CTTAGA-TTAGGAACGAACTTCGTATGCCTAAGCCGGCCCATGAAACAAGTGCT-CGAGCGCTGA
1 CTTAGACAT-GGAACGAACTCCGTATGCCTAAGCCAACCCATGAAATAAGTGCTGCGAGCGCTCA
* * * *
22492639 GCCGATCGGAGAGGCATAATGCGTAAGCCGAGGATCGGCTCAATCCCCTTCTGCATGTTGTCGAT
65 GCCGATCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCTCGATCCCC-TCTGCGTGCTGTCGAT
* ** * * *****
22492704 CCTGCTGCCA-CAATGCTCGGTTCAGTTGGGG
129 CCTGCTG-TAGCAACCCTCGATCCAGTCCAAT
* * * * * * *
22492735 CTTAGACATGGAATGAACTCCCTAT-ACTAAAGCCAACCCACGAAAT--GGGCATGCGGGTGCTC
1 CTTAGACATGGAACGAACTCCGTATGCCT-AAGCCAACCCATGAAATAAGTGC-TGCGAGCGCTC
* * * * **** * * *
22492797 AGCCGATCGGAGAGGCAGAATGCGTAAG--TAGGATCGACAAC-A-CGCAGAGGGGTTCGGTCCG
64 AGCCGATCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGC-TCGATCCCCTCTGCGTGCTGT-CG
* *
22492858 ATCTTAGACTG--GGAA---T-GAACTCC-GT---AT
127 ATCCT-G-CTGTAGCAACCCTCG-A-TCCAGTCCAAT
* * * * *
22492885 GCTTAGACATGGAATGAACTCTGTATCCCTAAGCCAACCCATGAAATGAGTG-TGCGGGCGCTCA
1 -CTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCATGAAATAAGTGCTGCGAGCGCTCA
* * * * * *
22492949 GCCGATCGGAGAGGCAGAATGCGCAAGCC-AGGGATAGGCTCGGTCCCGTCTTACGTGCTGTCAA
65 GCCGATCGGAGAGGCAGAATGCGTAAGCCGA-GGATCGGCTCGATCCCCTC-TGCGTGCTGTCGA
22493013 TCCTGCTGTAGCAACCCTCGATCCAGTCCAAT
128 TCCTGCTGTAGCAACCCTCGATCCAGTCCAAT
* ** *
22493045 CTTAGA-TTAGGAACGAACTCCGTATGCCTAAGCCGGCCCATGAAATAAGTGCT-CGAGCGCTGA
1 CTTAGACAT-GGAACGAACTCCGTATGCCTAAGCCAACCCATGAAATAAGTGCTGCGAGCGCTCA
* * * * *
22493108 GCCGATCCGAGAGGCATAATGCATAAGCCGAGGATCGGCCCGATCCTCCTCTGCGTGTTGTCGAT
65 GCCGATCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCTCGATCC-CCTCTGCGTGCTGTCGAT
* * * * *****
22493173 CCTGCTGCCA-CAATCCTCGGTTCAGTTGGGG
129 CCTGCTG-TAGCAACCCTCGATCCAGTCCAAT
* * * * * * * *
22493204 CTTAGACATGGAATGAACTCCCTAT-ACTAAAGCCAACCCACG-AA-ACGGGCATGCGGGTGCTC
1 CTTAGACATGGAACGAACTCCGTATGCCT-AAGCCAACCCATGAAATAAGTGC-TGCGAGCGCTC
* * ** * * * **
22493266 AGCCGATCAGAGAGGCAGAATGCGTAAGCTG-GGATTAGC-CTGGTCCCCCCTGCGTGATACCGA
64 AGCCGATCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCTC-GATCCCCTCTGCGTGCTGTCGA
**
22493329 TCCTGCTGTCA-CAACCCTCGATCCAGTCTGAT
128 TCCTGCTGT-AGCAACCCTCGATCCAGTCCAAT
*
22493361 CTTAGAC-TGTGAATGAACTCC
1 CTTAGACATG-GAACGAACTCC
22493382 TGTGCTCAGA
Statistics
Matches: 606, Mismatches: 152, Indels: 99
0.71 0.18 0.12
Matches are distributed among these distances:
151 76 0.13
152 8 0.01
153 12 0.02
154 12 0.02
155 9 0.01
156 15 0.02
157 76 0.13
158 24 0.04
159 311 0.51
160 62 0.10
161 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (159 bp):
CTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCATGAAATAAGTGCTGCGAGCGCTCAG
CCGATCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCTCGATCCCCTCTGCGTGCTGTCGATCC
TGCTGTAGCAACCCTCGATCCAGTCCAAT
Found at i:22493260 original size:469 final size:470
Alignment explanation
Indices: 22492381--22493293 Score: 1668
Period size: 469 Copynumber: 1.9 Consensus size: 470
22492371 ACCCTCGGTC
22492381 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATCCCTA
1 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATCCCTA
* * *
22492446 AGCCAACCCATGAAATGAGTGTGCGGGCGCTCAAGCTGACCGGAGAGGCAGAATGTGCAAGCTAG
66 AGCCAACCCATGAAATGAGTGTGCGGGCGCTCAAGCCGACCGGAGAGGCAGAATGCGCAAGCCAG
*
22492511 GGATAGGCTCGGTCCCGTCTTACGTGCTGTCAATCCTGCTGTAGCAACCCTCGATCTAGTCCAAT
131 GGATAGGCTCGGTCCCGTCTTACGTGCTGTCAATCCTGCTGTAGCAACCCTCGATCCAGTCCAAT
*
22492576 CTTAGATTAGGAACGAACTTCGTATGCCTAAGCCGGCCCATGAAACAAGTGCTCGAGCGCTGAGC
196 CTTAGATTAGGAACGAACTCCGTATGCCTAAGCCGGCCCATGAAACAAGTGCTCGAGCGCTGAGC
* * *
22492641 CGATCGGAGAGGCATAATGCGTAAGCCGAGGATCGGCTCAATCCCCTTCTGCATGTTGTCGATCC
261 CGATCCGAGAGGCATAATGCATAAGCCGAGGATCGGCCCAATCCCCTTCTGCATGTTGTCGATCC
*
22492706 TGCTGCCACAATGCTCGGTTCAGTTGGGGCTTAGACATGGAATGAACTCCCTATACTAAAGCCAA
326 TGCTGCCACAATCCTCGGTTCAGTTGGGGCTTAGACATGGAATGAACTCCCTATACTAAAGCCAA
* *
22492771 CCCACGAAATGGGCATGCGGGTGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGTAGGATCGACA
391 CCCACGAAACGGGCATGCGGGTGCTCAGCCGATCAGAGAGGCAGAATGCGTAAGTAGGATCGACA
22492836 ACACGCAGAGGGGTT
456 ACACGCAGAGGGGTT
22492851 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATCCCTA
1 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATCCCTA
*
22492916 AGCCAACCCATGAAATGAGTGTGCGGGCGCTC-AGCCGATCGGAGAGGCAGAATGCGCAAGCCAG
66 AGCCAACCCATGAAATGAGTGTGCGGGCGCTCAAGCCGACCGGAGAGGCAGAATGCGCAAGCCAG
22492980 GGATAGGCTCGGTCCCGTCTTACGTGCTGTCAATCCTGCTGTAGCAACCCTCGATCCAGTCCAAT
131 GGATAGGCTCGGTCCCGTCTTACGTGCTGTCAATCCTGCTGTAGCAACCCTCGATCCAGTCCAAT
*
22493045 CTTAGATTAGGAACGAACTCCGTATGCCTAAGCCGGCCCATGAAATAAGTGCTCGAGCGCTGAGC
196 CTTAGATTAGGAACGAACTCCGTATGCCTAAGCCGGCCCATGAAACAAGTGCTCGAGCGCTGAGC
* *
22493110 CGATCCGAGAGGCATAATGCATAAGCCGAGGATCGGCCCGATCCTCC-TCTGCGTGTTGTCGATC
261 CGATCCGAGAGGCATAATGCATAAGCCGAGGATCGGCCCAATCC-CCTTCTGCATGTTGTCGATC
22493174 CTGCTGCCACAATCCTCGGTTCAGTTGGGGCTTAGACATGGAATGAACTCCCTATACTAAAGCCA
325 CTGCTGCCACAATCCTCGGTTCAGTTGGGGCTTAGACATGGAATGAACTCCCTATACTAAAGCCA
22493239 ACCCACGAAACGGGCATGCGGGTGCTCAGCCGATCAGAGAGGCAGAATGCGTAAG
390 ACCCACGAAACGGGCATGCGGGTGCTCAGCCGATCAGAGAGGCAGAATGCGTAAG
22493294 CTGGGATTAG
Statistics
Matches: 427, Mismatches: 15, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
469 328 0.77
470 99 0.23
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.21
Consensus pattern (470 bp):
CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATCCCTA
AGCCAACCCATGAAATGAGTGTGCGGGCGCTCAAGCCGACCGGAGAGGCAGAATGCGCAAGCCAG
GGATAGGCTCGGTCCCGTCTTACGTGCTGTCAATCCTGCTGTAGCAACCCTCGATCCAGTCCAAT
CTTAGATTAGGAACGAACTCCGTATGCCTAAGCCGGCCCATGAAACAAGTGCTCGAGCGCTGAGC
CGATCCGAGAGGCATAATGCATAAGCCGAGGATCGGCCCAATCCCCTTCTGCATGTTGTCGATCC
TGCTGCCACAATCCTCGGTTCAGTTGGGGCTTAGACATGGAATGAACTCCCTATACTAAAGCCAA
CCCACGAAACGGGCATGCGGGTGCTCAGCCGATCAGAGAGGCAGAATGCGTAAGTAGGATCGACA
ACACGCAGAGGGGTT
Found at i:22494088 original size:26 final size:26
Alignment explanation
Indices: 22494059--22494109 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
22494049 GATCTGATCA
*
22494059 TAGACTAG-GAATGAACTCCGTATGCT
1 TAGACT-GTGAATAAACTCCGTATGCT
*
22494085 TAGACTGTGGATAAACTCCGTATGC
1 TAGACTGTGAATAAACTCCGTATGC
22494110 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGACTGTGAATAAACTCCGTATGCT
Found at i:22494809 original size:26 final size:26
Alignment explanation
Indices: 22494771--22494823 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22494761 GGCTCAAACT
*
22494771 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
22494797 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
22494823 C
1 C
22494824 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:22495335 original size:26 final size:26
Alignment explanation
Indices: 22495306--22495358 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22495296 CTGGTTTGAT
*
22495306 CTTAGA-ATGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
22495332 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
22495358 C
1 C
22495359 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22495632 original size:159 final size:159
Alignment explanation
Indices: 22495331--22495717 Score: 413
Period size: 159 Copynumber: 2.4 Consensus size: 159
22495321 AACTCTGTAT
* *
22495331 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGGCGCTCA
* * * * ** * ***
22495396 GTCGATCGAGAGGTAGAATGCACAAGCCGAGGATCGGCTTGATCCCCCCCTGTGTGCTGTTGATC
66 GCCGATCGAGAGGCAGAATGCACAAGCCGAGGATCGACCTGATCCCCCCCTACGTCCTACCGATC
* * * *
22495461 CTGCTGTAACAACACC-CGGCCCGATTCGA
131 CCGCTGCAACAAC-CCTCGACCCGATTAGA
* ** * * * *
22495490 TCTTTTAC-TGGGAATGAAGTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTC-AGGTGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGGCGCTC
* * * * *
22495553 AGCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCTGGTCCCCCTCTACGTCCTACCGA
65 AGCCGATC-GAGAGGCAGAATGCACAAGCCGAGGATCGACCTGATCCCCCCCTACGTCCTACCGA
* * * * *
22495618 TCCCGCTGCCACAACCCTCGATCTGGTTAGG
129 TCCCGCTGCAACAACCCTCGACCCGATTAGA
*
22495649 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACCAGCGTGCG-GGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGGCGCTCA
22495713 GCCGA
66 GCCGA
22495718 GGATCGGCCC
Statistics
Matches: 182, Mismatches: 41, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
158 15 0.08
159 166 0.91
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGGCGCTCA
GCCGATCGAGAGGCAGAATGCACAAGCCGAGGATCGACCTGATCCCCCCCTACGTCCTACCGATC
CCGCTGCAACAACCCTCGACCCGATTAGA
Found at i:22495824 original size:26 final size:26
Alignment explanation
Indices: 22495795--22495847 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
22495785 TCGGTCTGAT
22495795 CTTAGAC-TGGGAATGAACT-TCGTATG
1 CTTAGACAT-GGAATGAACTCT-GTATG
22495821 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
22495847 C
1 C
22495848 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:22496168 original size:159 final size:158
Alignment explanation
Indices: 22495820--22496286 Score: 414
Period size: 158 Copynumber: 2.9 Consensus size: 158
22495810 AACTTCGTAT
* * *
22495820 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
1 GCTTGGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAA
22495885 CCGACCGATGAGACAGAATGCACAAGCCGGGGACTAGCCCGATCCCCTCTGCGTGCTGTCGATCC
66 CCGACCGATGAGACAGAATGCACAAGCCGGGGACTAGCCCGATCCCCTCTGCGTGCTGTCGATCC
* *
22495950 TACTATCACAACCCTCGGTCCAGTTCGA
131 TACTACCACAACCCTCGGTCCAGCTCGA
* * * * *
22495978 TCTTGGAC-TGGAAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGTGGGCGGTGA
1 GCTTGGACATGG-AATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCA
* * * * * *
22496042 GCCGATCG--GAGATGCATAATG-ACCAAGTCGGGGA-TCGGTCCGATGCCCCTCTGCGTGCTG-
65 ACCGACCGATGAGA--CAGAATGCA-CAAGCCGGGGACT-AGCCCGAT-CCCCTCTGCGTGCTGT
* * *
22496102 CTGATACC-GCTACCACAACCCTCGGT-CAGACTGGG
125 C-GAT-CCTACTACCACAACCCTCGGTCCAG-CTCGA
** ** * *
22496137 GCTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAG
1 GCTTGGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAA
* * * ** * * * **
22496202 TCGACCGGA-GAGGCAGAATGCATAAGTTGGGGA-TCAGCCCGGTCCCCCCTACGTGCTACCGAT
66 CCGACC-GATGAGACAGAATGCACAAGCCGGGGACT-AGCCCGATCCCCTCTGCGTGCTGTCGAT
* * **
22496265 CTTGCTACCGTAACCCTCGGTC
129 CCTACTACCACAACCCTCGGTC
22496287 TGGTTCGATC
Statistics
Matches: 249, Mismatches: 44, Indels: 31
0.77 0.14 0.10
Matches are distributed among these distances:
156 4 0.02
157 6 0.02
158 115 0.46
159 114 0.46
160 7 0.03
161 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTGGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAA
CCGACCGATGAGACAGAATGCACAAGCCGGGGACTAGCCCGATCCCCTCTGCGTGCTGTCGATCC
TACTACCACAACCCTCGGTCCAGCTCGA
Found at i:22496197 original size:488 final size:489
Alignment explanation
Indices: 22495245--22496201 Score: 1223
Period size: 488 Copynumber: 2.0 Consensus size: 489
22495235 CGACCCAATC
* * *
22495245 CCCCTGCATGCTACCTATCCTGCTGTTGGTCCTGCTGCCGCAACCCTCGGTCTGGTTTGATCTTA
1 CCCCTGCATGCTACCAATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTA
22495310 GAATGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
66 GAATGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
** * ** * **
22495375 AACGAGCGTGCGGGGCGCTCAGTCGATCGAGAGGTAGAATGCACAAGCCGAGGATCGGCTTGATC
131 AACGAGCGTGCGGGGCGCTCAACCGACCGAGAGACAGAATGCACAAGCCGAGGATCAGCCCGATC
* * * * * ** *
22495440 CCCCCCTGTGTGCTGTTGATCCTGCTGTAACAACACCCGGCCCGATTCGATCTTTTACTGGGAAT
196 CCCCCCTGCGTGCTGTCGATCCTACTATAACAACACCCGGCCAGATTCGATCTTGGACTGGAAAT
* * * *
22495505 GAAGTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCAGGTGCTGAGCCGATCGGAGAGGCA
261 GAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTTCAGGCGCTGAGCCGATCGGAGAGGCA
* * *
22495570 TAATGCGCAAGCCGGGGATCGACCTGGTCCCCCTCTACGTCCTACCGATCCCGCTGCCACAACCC
326 TAATGCGCAAGCCGGGGATCGACCTGATCCCCCTCTACGTCCTACCGATACCGCTACCACAACCC
* ** * *
22495635 TCGATCTGGTTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACCAGC
391 TCGATCAGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACCAGC
22495700 GTGCGGGCGCTCAGCCGAGGATCGGCCCGGTCCT
456 GTGCGGGCGCTCAGCCGAGGATCGGCCCGGTCCT
* * * * *
22495734 CCCCTGCGTGCTATCAATCCTGCTGCTGGTCCTGCTGTCGTAACCCTCGAT-TCGGTCTGATCTT
1 CCCCTGCATGCTACCAATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTT
* * *
22495798 AGACTGGGAATGAACT-TCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAT
65 AGAATGGGAATGAACTCT-GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
*
22495862 GAAACGAGCGTGC-GGGCGCTCAACCGACCGATGAGACAGAATGCACAAGCCGGGGA-CTAGCCC
129 GAAACGAGCGTGCGGGGCGCTCAACCGACCGA-GAGACAGAATGCACAAGCCGAGGATC-AGCCC
* *
22495925 GAT-CCCCTCTGCGTGCTGTCGATCCTACTATCACAAC-CCTCGGTCCAG-TTCGATCTTGGACT
192 GATCCCCCCCTGCGTGCTGTCGATCCTACTATAACAACACC-CGG-CCAGATTCGATCTTGGACT
* * * *
22495987 GGAAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGT-GGGCGGTGAGCCGATCGG
255 GGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGT-TCAGGCGCTGAGCCGATCGG
* * * * * * * *
22496051 AGATGCATAATGAC-CAAGTCGGGGATCGGTCC-GATGCCCCTCTGCGTGCTGCTGATACCGCTA
319 AGAGGCATAATG-CGCAAGCCGGGGATC-GACCTGATCCCCCTCTACGTCCTACCGATACCGCTA
* * *
22496114 CCACAACCCTCGGTCAGACTGGGGCTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
382 CCACAACCCTCGATCAGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
** *
22496179 GAAACGGGTGTGCGGGCGCTCAG
447 GAAACCAGCGTGCGGGCGCTCAG
22496202 TCGACCGGAG
Statistics
Matches: 399, Mismatches: 60, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
487 2 0.01
488 237 0.59
489 160 0.40
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (489 bp):
CCCCTGCATGCTACCAATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTA
GAATGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
AACGAGCGTGCGGGGCGCTCAACCGACCGAGAGACAGAATGCACAAGCCGAGGATCAGCCCGATC
CCCCCCTGCGTGCTGTCGATCCTACTATAACAACACCCGGCCAGATTCGATCTTGGACTGGAAAT
GAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTTCAGGCGCTGAGCCGATCGGAGAGGCA
TAATGCGCAAGCCGGGGATCGACCTGATCCCCCTCTACGTCCTACCGATACCGCTACCACAACCC
TCGATCAGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACCAGC
GTGCGGGCGCTCAGCCGAGGATCGGCCCGGTCCT
Found at i:22496876 original size:26 final size:26
Alignment explanation
Indices: 22496847--22496896 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
22496837 CCAGTCTGAT
22496847 CTTAGACTCAGAATGAACTCTGTACG
1 CTTAGACTCAGAATGAACTCTGTACG
** *
22496873 CTTAGACTGGGGATGAACTCTGTA
1 CTTAGACTCAGAATGAACTCTGTA
22496897 TGCCTAAGCG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTCAGAATGAACTCTGTACG
Found at i:22497969 original size:171 final size:159
Alignment explanation
Indices: 22497792--22498454 Score: 562
Period size: 159 Copynumber: 4.1 Consensus size: 159
22497782 CTAGACATGA
* * * * *
22497792 AATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGAGCGCTCAACCGGTCGGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAG
* * * *
22497857 GCAAAATGCGCAAGCTGGGGATTGGCTCGGTCCCCCTCTATGTGCTGTCGATCCTGCTGCTGGTC
66 GCAAAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGA---T-C--C---TA
* * *
22497922 CTACTGCCGTAACCCTCATTCTGGTCCAATTTTAGACTGGG
122 CTA-T--CGTAACCCTCAGTCCGGTCCAATCTTAGACTGGG
* * * * *
22497963 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGATCCGCTGGTCGGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAG
* * * * * *
22498028 GTAGAAAT-TGCAAGCTGGGGACCGGCCCAGTCCCCCCCTCCGTGCTGTCGATCCTACTATCGTA
66 GCA-AAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGATCCTACTATCGTA
* *
22498092 ACCCTCGGTCCGGTCCGATCTTAGACTGGG
130 ACCCTCAGTCCGGTCCAATCTTAGACTGGG
* * *
22498122 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCCGGCCGGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAG
* * * * * * * ** **
22498187 GCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGGTCTTGCTGCCACAA
66 GCAAAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGATCCTACTATCGTAA
** *****
22498252 AGCTC-GATCCGGTTGGGGCTTAGACAT-GG
131 CCCTCAG-TCCGGTCCAATCTTAGAC-TGGG
* * * *
22498281 AATGAACTACC-TATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTTAGCCGATCGGAGA
1 AATGAACT-CCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGA
* * * * * * * ** **
22498345 GGCAGAATACACAAGCCGGGGATCGGCCTGGTCCCCC-CTGCGTGCTGCCGATCCTACTGCCACA
65 GGCAAAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGATCCTACTATCGTA
* * * *
22498409 ACCCTCGGTCCAGACCGATCTTAGACTGGG
130 ACCCTCAGTCCGGTCCAATCTTAGACTGGG
22498439 AATGAACTCCGTATGC
1 AATGAACTCCGTATGC
22498455 TTAGACTGGG
Statistics
Matches: 406, Mismatches: 78, Indels: 29
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.01
158 57 0.14
159 239 0.59
160 3 0.01
161 1 0.00
162 4 0.01
165 1 0.00
167 1 0.00
168 1 0.00
171 92 0.23
172 4 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAG
GCAAAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGATCCTACTATCGTAA
CCCTCAGTCCGGTCCAATCTTAGACTGGG
Found at i:22498200 original size:159 final size:158
Alignment explanation
Indices: 22497920--22498454 Score: 581
Period size: 159 Copynumber: 3.4 Consensus size: 158
22497910 CTGCTGCTGG
** ** * * *
22497920 TCCTACTGCCGTAACCCTCATTCTGGTCCAATTTTAGACTGGGAATGAACTCCGTATGCCTAAGC
1 TCCTACTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * * * *
22497985 CAACCCATGAAACGAGTGTGCGGGTGATCCGCTGGTCGGAGAGGTAGAAATTGCAAGCTGGGGAC
66 CAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCA-AAATCGCAAGCCGGGGAT
* *
22498050 CGGCCCAGTCCCCCCCTCCGTGCTGTCGA
130 CGGCCCGGTCCCCCCCTGCGTGCTGTCGA
** ** *
22498079 TCCTACTATCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCCTACTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
22498144 CAACCCACGAAACGAGCGTGCGGGTGCTGAGCCGGCCGGAGAGGCATAATGCGCAAGCCGGGGAT
66 CAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAAAAT-CGCAAGCCGGGGAT
* * *
22498209 CGGCCCGGTCCCCCTCTGCATGCTGTCGG
130 CGGCCCGGTCCCCCCCTGCGTGCTGTCGA
* * ** * ** **
22498238 TCTTGCTGCCACAAAGCTCGATCCGGTTGGGGCTTAGACAT-GGAATGAACTACC-TATGCCTAA
1 TCCTACTGCCACAACCCTCGGTCCGGTCCGATCTTAGAC-TGGGAATGAACT-CCGTATGCCTAA
* * * * *
22498301 GCCAACCCATGAAACGGGCGTGCGGGTGCTTAGCCGATCGGAGAGGCAGAATACACAAGCCGGGG
64 GCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAAAAT-CGCAAGCCGGGG
* *
22498366 ATCGGCCTGGT-CCCCCCTGCGTGCTGCCGA
128 ATCGGCCCGGTCCCCCCCTGCGTGCTGTCGA
* *
22498396 TCCTACTGCCACAACCCTCGGTCCAGACCGATCTTAGACTGGGAATGAACTCCGTATGC
1 TCCTACTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
22498455 TTAGACTGGG
Statistics
Matches: 308, Mismatches: 63, Indels: 11
0.81 0.16 0.03
Matches are distributed among these distances:
157 3 0.01
158 61 0.20
159 241 0.78
160 3 0.01
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
TCCTACTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAAAATCGCAAGCCGGGGATC
GGCCCGGTCCCCCCCTGCGTGCTGTCGA
Found at i:22498464 original size:26 final size:26
Alignment explanation
Indices: 22498428--22498480 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22498418 CCAGACCGAT
22498428 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22498454 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22498480 C
1 C
22498481 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22498631 original size:514 final size:500
Alignment explanation
Indices: 22497953--22499087 Score: 1281
Period size: 514 Copynumber: 2.2 Consensus size: 500
22497943 TGGTCCAATT
* * * * *
22497953 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGATCCGCT
1 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGTGCTCAGCC
* * * * *
22498018 GGTCGGAGAGGTAGAAAT-TGCAAGCTGGGGACCGGCCCAGTCCCCCCCTCCGTGCTGTCGATCC
66 GGTCGGAGAGGCA-AAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTCCGTGCTGTCGATCC
* * *
22498082 TACTATCGTAACCCTCGGTCCGGTCCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCA
130 TACTATCGTAACCCTCGGTCCGGTCAGAGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCA
* * *
22498146 ACCCACGAAACGAGCGTGCGGGTGCTGAGCCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCG
194 ACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAAAATGCACAAGCCGGGGATCG
* * * * * * * * ** * *
22498211 GCCCGGTCCCCCTCTGCATGCTGTCGGTCTTGCTGCCACAAAGCTCGATCCGGTTGGGGCTTAGA
259 ACCCGATCCCCCTCTACACGCTGTCGATCCTGCTACCACAAACCTCGATCCGGTCCGAGATTAGA
* * * * *
22498276 CAT-GGAATGAACTACC-TATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTTAGCCGAT
324 -ATGGGAATGAACT-CCATATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAACCGAT
* * * * *
22498339 CGGAGAGGCAGAATACACAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGCCGATCCTACTG
387 CGGAGAGCCAGAATACACAAGCCAGGGATCGGCCTAGT-CCCCCTACGTGCTACCGATCCTACTG
* * * *
22498404 CCACAACCCTCGGTCCAGACCGATCTTAGACTGGGAATGAACTCCGTATGC
451 CCACAACCCTCGATCAAGACCAATCTTAGACT-GGAATGAACTCCATATGC
*
22498455 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGTGGGTGCTCAGCC
1 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGTGCTCAGCC
* * * * **
22498520 GGTCAGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTTTGTGCTGTCGATCTC
66 GGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTCCGTGCTGTCGA--TC
* * *
22498585 GCTACTGGTCCCGCTATCACAACCCTTGGTCCGG-CTAGGGCTTAGACATGGAATGAACTCCGTA
129 -CTACT-AT--CG---T---AACCCTCGGTCCGGTC-AGAGCTTAGACATGGAATGAACTCCGTA
* *
22498649 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAAAATGCACAA
183 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAAAATGCACAA
* * * * * * **
22498714 GTCGGGGATCGACCCGATCCCCCTCTACGCGTTGTCGATCCTGCTACCGCAACCCTCGGTTTGGT
248 GCCGGGGATCGACCCGATCCCCCTCTACACGCTGTCGATCCTGCTACCACAAACCTCGATCCGGT
* *
22498779 CCGATATTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGC
313 CCGAGATTAGAATGGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGC
* * * * *
22498844 TCAACCGGTCGGAGAGCCAGAATGCACAAGCTAGGGATCGGCCTAGTCCCCTTACGTGCTATCGA
378 TCAACCGATCGGAGAGCCAGAATACACAAGCCAGGGATCGGCCTAGTCCCCCTACGTGCTACCGA
* ** ** ** *
22498909 TCCTGCTTTCGTAACCCTCGATCAAGTTCAATCTTAGACTGGAATGAACTTCATATGC
443 TCCTACTGCCACAACCCTCGATCAAGACCAATCTTAGACTGGAATGAACTCCATATGC
* * * * *
22498967 TTAGACTGGAGATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGTGCTCAGCC
1 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGTGCTCAGCC
* * * * *
22499032 GGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCACTACGTGCT
66 GGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTCCGTGCT
22499088 ACCGATGCAG
Statistics
Matches: 525, Mismatches: 91, Indels: 24
0.82 0.14 0.04
Matches are distributed among these distances:
501 3 0.01
502 105 0.20
504 2 0.00
505 5 0.01
506 1 0.00
508 2 0.00
511 1 0.00
512 123 0.23
513 48 0.09
514 234 0.45
515 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (500 bp):
TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGTGCTCAGCC
GGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTCCGTGCTGTCGATCCT
ACTATCGTAACCCTCGGTCCGGTCAGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAAAATGCACAAGCCGGGGATCGAC
CCGATCCCCCTCTACACGCTGTCGATCCTGCTACCACAAACCTCGATCCGGTCCGAGATTAGAAT
GGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAACCGATCGGA
GAGCCAGAATACACAAGCCAGGGATCGGCCTAGTCCCCCTACGTGCTACCGATCCTACTGCCACA
ACCCTCGATCAAGACCAATCTTAGACTGGAATGAACTCCATATGC
Found at i:22498969 original size:25 final size:26
Alignment explanation
Indices: 22498941--22498992 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22498931 CAAGTTCAAT
22498941 CTTAGACTGGA-ATGAACTTCATATG
1 CTTAGACTGGAGATGAACTTCATATG
*
22498966 CTTAGACTGGAGATGAACTTCGTATG
1 CTTAGACTGGAGATGAACTTCATATG
22498992 C
1 C
22498993 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 11 0.44
26 14 0.56
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTTCATATG
Found at i:22499166 original size:26 final size:26
Alignment explanation
Indices: 22499137--22499189 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22499127 CCAATCTGAT
* *
22499137 CTTAGATAGGGAATCAACTTTGTATG
1 CTTAGACAGGGAATCAACTCTGTATG
* *
22499163 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACAGGGAATCAACTCTGTATG
22499189 C
1 C
22499190 CTAGGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACAGGGAATCAACTCTGTATG
Found at i:22499417 original size:158 final size:157
Alignment explanation
Indices: 22499163--22499664 Score: 519
Period size: 158 Copynumber: 3.2 Consensus size: 157
22499153 ACTTTGTATG
* * * * *
22499163 CTTAGACATGGAATGAACTCTGTATGCCTAGGCCAACCCATGAAACGAGCATGCGGGCTCTGAAT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAGT
* * * * * *
22499228 CGGTCGGAGAGGTAGAATGCACAAGTTAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCCT
66 CGGCCGGAGAGGCATAATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
* * *
22499293 GCTACTGCAACCCTCAATCTGATCTGAT
131 GCTGCCGCAACCCTCGATCTG-TCTGAT
* * *
22499321 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAG
* ** * * * *
22499385 CCAACCGGAGAGGCATAATGCGCAAGTCAGGGATCAGCCCGATCCCCTTCTGCGTGCTGCCGGT-
65 TCGGCCGGAGAGGCATAATGCGCAAGTCAGGGATCGGCCCGATCCCC-CCTGCGTGCTGTCGATC
* * **
22499449 CTCGCTGCCACAACCCTCGATCCGTCTGGGG
129 CT-GCTGCCGCAACCCTCGATCTGTCT-GAT
* * * *
22499480 CTTAGACATGGAATGAACTCAC-TATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAG
* * * * *
22499544 TCGGCCGGAGAGGCATAATGCGTAA-TCCAGGGATTGGCTCGGTCCCCCCTGCGTGCTATCGATC
65 TCGGCCGGAGAGGCATAATGCGCAAGT-CAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
** * *
22499608 CTATTGCCGCAACCCTTGGTCTGGTCTGAT
129 CTGCTGCCGCAACCCTCGATCT-GTCTGAT
22499638 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
22499665 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 55, Indels: 22
0.78 0.15 0.06
Matches are distributed among these distances:
157 3 0.01
158 148 0.53
159 125 0.45
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAGT
CGGCCGGAGAGGCATAATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGATCTGTCTGAT
Found at i:22499518 original size:159 final size:157
Alignment explanation
Indices: 22499162--22499600 Score: 445
Period size: 159 Copynumber: 2.8 Consensus size: 157
22499152 AACTTTGTAT
* * * * *
22499162 GCTTAGACATGGAATGAACTCTGTATGCCTAGGCCAACCCATGAAACGAGCATGCGGGCTCTGAA
1 GCTTAGACATGGAATGAACTC-CTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAG
* * * * * * *
22499227 TCGGTCGGAGAGGTAGAATGCACAAGTTAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
65 TCGGCCGGAGAGGCATAATGCGCAAGTCAGGGATCAGCCCGATCCCCCCTGCGTGCTGCCAATCC
** *
22499292 TGCTACTGCAACCCTCAATCTGATCTGA
130 TGCTACCACAACCCTCAATCCGATCTGA
* * * *
22499320 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCC-TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGA
* ** * **
22499384 GCCAACCGGAGAGGCATAATGCGCAAGTCAGGGATCAGCCCGATCCCCTTCTGCGTGCTGCCGGT
64 GTCGGCCGGAGAGGCATAATGCGCAAGTCAGGGATCAGCCCGATCCCC-CCTGCGTGCTGCCAAT
* * *
22499449 -CTCGCTGCCACAACCCTCGATCCG-TCTGGG
128 CCT-GCTACCACAACCCTCAATCCGATCT-GA
* * * *
22499479 GCTTAGACATGGAATGAACTCACTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTC-CTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAG
* ** * *
22499544 TCGGCCGGAGAGGCATAATGCGTAA-TCCAGGGATTGGCTCGGTCCCCCCTGCGTGCT
65 TCGGCCGGAGAGGCATAATGCGCAAGT-CAGGGATCAGCCCGATCCCCCCTGCGTGCT
22499601 ATCGATCCTA
Statistics
Matches: 228, Mismatches: 45, Indels: 16
0.79 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 106 0.46
159 119 0.52
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAGT
CGGCCGGAGAGGCATAATGCGCAAGTCAGGGATCAGCCCGATCCCCCCTGCGTGCTGCCAATCCT
GCTACCACAACCCTCAATCCGATCTGA
Found at i:22499674 original size:26 final size:26
Alignment explanation
Indices: 22499638--22499690 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22499628 CTGGTCTGAT
22499638 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22499664 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22499690 C
1 C
22499691 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.