Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 220 of 402
Found at i:22499792 original size:184 final size:183
Alignment explanation
Indices: 22499479--22500045 Score: 596
Period size: 196 Copynumber: 3.0 Consensus size: 183
22499469 TCCGTCTGGG
* * *
22499479 GCTTAGACATGGAATGAACTCACTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTC-CTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * *
22499544 TCGGCCGGAGAGGCATAATGCGTAATCCAGGGATTGGCTCGGTCCCCCCTGCGTGCTATCGATCC
65 TCGGCCGGAGAGGCAGAATGCGTAAGCCAGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
**
22499609 TATTGCCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
130 TATTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
22499663 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCACTCA
1 GCTTAGACAT-GGAATGAACTCC-TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * * **
22499727 GCCGACCAGAGAGGTAGAATGCGTAAGCTAGGGATTGGCCCGCTCCCCCTTATGTGCTGTCGATC
64 GTCGGCCGGAGAGGCAGAATGCGTAAGCCAGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATC
* * *
22499792 CTGCTGCTGGTCCTGCTACTGTAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGT
129 CT-AT--T-G-CC-G---C---AACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGT
22499857 AT
182 AT
* * *
22499859 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCTG
1 GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * *
22499924 TTGGCCGGAGAGGCAGAATGCATAAGCCGGGGATCGGTCCGGTCCCCCCCTGCGTGCTGTCGATA
65 TCGGCCGGAGAGGCAGAATGCGTAAGCCAGGGATTGGCCCGGT-CCCCCCTGCGTGCTGTCGATC
** ** * ** *
22499989 CTGCTATCGTAAAACTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCTTAT
129 CTATTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
22500044 GC
1 GC
22500046 CTAAGTCAAC
Statistics
Matches: 309, Mismatches: 58, Indels: 31
0.78 0.15 0.08
Matches are distributed among these distances:
183 2 0.01
184 107 0.35
185 43 0.14
187 1 0.00
188 1 0.00
189 2 0.01
190 1 0.00
191 1 0.00
192 1 0.00
193 1 0.00
194 1 0.00
196 128 0.41
197 20 0.06
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGT
CGGCCGGAGAGGCAGAATGCGTAAGCCAGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
ATTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:22499863 original size:26 final size:26
Alignment explanation
Indices: 22499834--22499886 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22499824 CTGATCCGAT
*
22499834 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
22499860 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
22499886 C
1 C
22499887 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:22500034 original size:698 final size:692
Alignment explanation
Indices: 22498423--22501101 Score: 2513
Period size: 698 Copynumber: 3.9 Consensus size: 692
22498413 TCGGTCCAGA
* *
22498423 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGT
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC
* * * * * * * * * *
22498487 CAACCCATGAAACGAGTGTGTGGGTGCTCAGCCGGTCAGAGAGGCATAATGCGCAAGCCGGGGAT
65 CAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCACAAGCCAGGGAT
* * ** **
22498552 CAGCCCGGTCCCCCTCTTTGTGCTGTCGAT-CTCGCTACTGGTCCCGCTATCACAACCCTTGGTC
130 CGGCCCGATCCCCC-CTGCGTGCTGTCGATCCT-GCTA----T--CGC-A--A-AA--CTCAGTC
* ** * *
22498616 CGG-CTAGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC
181 TGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTC
** * * ** * * * * *
22498679 GGGTGCTCAGTCGGTCGGAGAGGCAAAATGCACAAGTCGGGGATCGACCCGATCCCCCTCTACGC
244 GGGCACTGAGCCAATCGGAGAGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCTTCTACGT
* * * * * * * ** * *** *
22498744 GTTGTCGATCCTGCTACCGCAACCCTCGGTTTGGTC-CGATATTAGA-TTGGGAATGAACTCCAT
309 GCTGCCGGTCCTACTGCCACAACCCTC-GATCCGTCTGGGGCTTAGACAT-GGAATGAACTCC-T
** * * * *
22498807 ATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGCCAGAATGCACA
371 ATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCA
* * * * * *
22498872 AGCTAGGGATCGGC-CTAGT-CCCCTTACGTGCTATCGATCCTGCTTTCGTAACCCTCGATCAAG
436 AGCCAGGGATCGGCTC-GGTCCCCCCTACGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCAG
* * * *
22498935 T-TCAATCTTAGACT-GGAATGAACTTCATATGCTTAGACTGGAGATGAACTTCGTATGCCTAAG
500 TCT-GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
* * ** * * **
22498998 TCAACCCATGAAATGAGCGTGCAGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGA
564 TCAACCCACGAAACGAGCGTGCAGGCACTCAGCC-GACCGAGAGGCAGAATGCGTAAGCTAGGGA
* * * * * * *
22499063 TCGGCCCGATCCCCCACTACGTGCTACCGATGCAGCTGTAAGTCTTGCTGTCGTAAACCTCAATC
628 TTGGCCCGATCCCCC-TTACGTGCTGCCGATCCAGCTGTAGGTCCTGCTCT-GT-AACCTCAAT-
*
22499128 CAAT
689 CGAT
* * ** * *
22499132 CTGATCTTAGA-TAGGGAATCAACTTTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAGGC
1 CCGATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * * * * * * **
22499196 CAACCCATGAAACGAGCATGCGGGCTCTGAATCGGTCGGAGAGGTAGAATGCACAAGTTAGGGAT
65 CAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCACAAGCCAGGGAT
* ** * *
22499261 CGGCCCGATCCCCCCTGCGTGCTGTCAATCCTGCTA-CTGCAACCCTCAATCTGATCTGATCTTA
130 CGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTATC-GCAAAACTCAGTCTGGTCTGATCTTA
* * *
22499325 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAGCCAAC
194 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGCCAAT
* * * *
22499390 CGGAGAGGCATAATGCGCAAGTCAGGGATC-AGCCCGATCCCCTTCTGCGTGCTGCCGGT-CTCG
259 CGGAGAGGCATAATGCACAAGCCAGGGATCGA-CCCGATCCCCTTCTACGTGCTGCCGGTCCT-A
22499453 CTGCCACAACCCTCGATCCGTCTGGGGCTTAGACATGGAATGAACTCACTATGCCTAAGCCAACC
322 CTGCCACAACCCTCGATCCGTCTGGGGCTTAGACATGGAATGAACTC-CTATGCCTAAGCCAACC
* *** * ** * * * *
22499518 CATGAAATGGGTGTGCGGGCGCTCAGTCGGCCGGAGAGGCATAATGCGTAATCCAGGGATTGGCT
386 CACGAAACAAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCT
* ** * * * **
22499583 CGGTCCCCCCTGCGTGCTATCGATCCTATTGCCGCAACCCTTGGTCTGGTCTGATCTTAGACTGG
451 CGGTCCCCCCTACGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCAGTCTGATCTTAGACTGG
* *
22499648 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG
516 GAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * *
22499713 CATGCGGGCACTCAGCCGACCAGAGAGGTAGAATGCGTAAGCTAGGGATTGGCCCGCTCCCCCTT
581 CGTGCAGGCACTCAGCCGACC-GAGAGGCAGAATGCGTAAGCTAGGGATTGGCCCGATCCCCCTT
* * * *
22499778 ATGTGCTGTCGATCCTGCTGCT-GGTCCTGCTACTGTAACCCTCAGTCTGAT
645 ACGTGCTGCCGATCCAGCTG-TAGGTCCTGCT-CTGTAA-CCTCAATC-GAT
*
22499829 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCC
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* * * * *
22499894 AACCCACGAAACGAGCGTGCAGGCGCTCTGTTGGCCGGAGAGGCAGAATGCATAAGCCGGGGATC
66 AACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATC
* * * *
22499959 GGTCCGGTCCCCCCCTGCGTGCTGTCGATACTGCTATCGTAAAACTCAGTCTGGTCTGATCTTAG
131 GGCCCGAT-CCCCCCTGCGTGCTGTCGATCCTGCTATCGCAAAACTCAGTCTGGTCTGATCTTAG
* * *
22500024 ACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAACGTTCGGGCACAGAGCCAATC
195 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGCCAATC
* * *
22500089 GGAGAGGCATAATGCATAAGCCAGGGATCGACCCGATCCCCTTCTGCGTGCTGCCGGTCCCACTG
260 GGAGAGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCTTCTACGTGCTGCCGGTCCTACTG
*
22500154 CCACAACCCTCGATCCGGT-TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCA
325 CCACAACCCTCGATCC-GTCTGGGGCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCA
* * *** * * * *
22500218 CGAAACAGGCGTGCGGGTGCTCAACCGGTTTGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCG
388 CGAAACAAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCG
* ** ** * * *
22500283 GTCCCCCCTACATGCTGCCGATCCTGCTGTTTCAACCCTCAATCCAATCTGATCATAGACTGGGA
453 GTCCCCCCTACGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGA
* * *
22500348 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACACACGAAACAAGCG
518 ATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* ** * * * * *
22500413 TGTAGGCACTCAGCCGGTCGAAGAGGCATAATTCGTAAG-TCGGAGATTAGCTCGATCCCCCTCT
583 TGCAGGCACTCAGCCGACCG-AGAGGCAGAATGCGTAAGCTAGG-GATTGGCCCGATCCCCCT-T
* * * *
22500477 GCGTGCTGCCGATCCCGCTGTCGGTCCTG--CTG---CCAT-AATC-CT
645 ACGTGCTGCCGATCCAGCTGTAGGTCCTGCTCTGTAACC-TCAATCGAT
** * * *
22500519 -CGATC-----C--GG--T----T--G-GGGCTTAAACATGGAATGATCTCCGTTATCCCTAAGC
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCG-TATGCCTAAGC
* * * * * ***
22500567 CAACCCACCAAATGAGCGTGCGGGCGCTCAGTCAGCC-GAAAGGTAGAATGTGTAAGCCAGGGAT
65 CAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCACAAGCCAGGGAT
* * * * * *
22500631 TGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTATCACAACACTCGGT-TCGGTCTGATCTTA
130 CGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAAAACTCAGTCT-GGTCTGATCTTA
* * * *
22500695 GACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTTCGGGCATTGAGCCAGT
194 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGCCAAT
* *
22500760 -GGAGAGGCATAATGCACAAGCCGGGGATCGACCCGATCCCCCTT-TACGTGCTGTCGGTCCTAC
259 CGGAGAGGCATAATGCACAAGCCAGGGATCGACCCGAT-CCCCTTCTACGTGCTGCCGGTCCTAC
* ** *
22500823 TGCCACAACCCTCGGTATGGCTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCC
323 TGCCACAACCCTCGATCCGTCTGGGGCTTAGACATGGAATGAACTC-CTATGCCTAAGCCAACCC
* * * * *
22500888 ACGAAACAAGTGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGTAAGCC-GAGGATCGGTT
387 ACGAAACAAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGCCAG-GGATCGG-C
* * *
22500952 TC-GTCCCCCCTGCGTGCT-GCTGATCCTGCTGTCGCAACCCTCGGTCCAGTCTGATCTTAGACT
450 TCGGTCCCCCCTACGTGCTATC-GATCCTGCTGTCGCAACCCTCGATCCAGTCTGATCTTAGACT
* * *
22501015 AGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTTTGCCTAAGTCAACCCATGAAACG
514 GGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
*
22501080 AGCGTGC-GGACGCTCAGCCGAC
579 AGCGTGCAGG-CACTCAGCCGAC
22501102 TAAAGAGGCA
Statistics
Matches: 1639, Mismatches: 290, Indels: 120
0.80 0.14 0.06
Matches are distributed among these distances:
670 6 0.00
671 281 0.17
672 113 0.07
673 47 0.03
674 42 0.03
676 1 0.00
680 1 0.00
682 2 0.00
684 1 0.00
689 5 0.00
690 1 0.00
692 5 0.00
693 1 0.00
695 9 0.01
696 217 0.13
697 201 0.12
698 537 0.33
699 31 0.02
701 2 0.00
702 2 0.00
708 17 0.01
709 116 0.07
710 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (692 bp):
CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
AACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATC
GGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAAAACTCAGTCTGGTCTGATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGCCAATCG
GAGAGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCTTCTACGTGCTGCCGGTCCTACTGC
CACAACCCTCGATCCGTCTGGGGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGA
AACAAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTC
CCCCCTACGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATG
AACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
AGGCACTCAGCCGACCGAGAGGCAGAATGCGTAAGCTAGGGATTGGCCCGATCCCCCTTACGTGC
TGCCGATCCAGCTGTAGGTCCTGCTCTGTAACCTCAATCGAT
Found at i:22500377 original size:26 final size:26
Alignment explanation
Indices: 22500338--22500388 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
22500328 AATCTGATCA
22500338 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
22500364 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
22500389 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:22500876 original size:158 final size:158
Alignment explanation
Indices: 22500542--22501033 Score: 415
Period size: 158 Copynumber: 3.1 Consensus size: 158
22500532 GCTTAAACAT
* * * * ** * *
22500542 GGAATGATCTCCGTTATCCCTAAGCCAACCCACCAAATGAGCGTGCGGGCGCTCAGTCAGCC-GA
1 GGAATGAACTCC-ATATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCACTCAGCCAGCCGGA
* * *** * * * *
22500606 AAGGTAGAATGTGTAAGCCAGGGATTGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTATCAC
65 GAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTACTACCAC
*
22500671 AACACTCGGTTCGGTCTGATCTTAGACTG
130 AACACTCGGTTCGGTCTGAGCTTAGACTG
* * * * * *
22500700 GGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTTCGGGCATTGAGCCAG-TGGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCACTCAGCCAGCCGGAG
* * * *
22500764 AGGCATAATGCACAAGCCGGGGATCGACCCGATCCCCCTTTACGTGCTGTCGGTCCTACTGCCAC
66 AGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCC-CTACGTGCTGTCGATCCTACTACCAC
* *
22500829 AACCCTCGGTAT-GG-CTGGGGCTTAGACAT-
130 AACACTCGGT-TCGGTCT-GAGCTTAGAC-TG
* * *
22500858 GGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCGCTCAGCCAGCCGGA
1 GGAATGAACTC-CATATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCACTCAGCCAGCCGGA
** * *** * * **
22500922 GAGGCAGAATGCGTAAGCCGAGGATCGGTTTCG-TCCCCCCTGCGTGCTG-CTGATCCTGCTGTC
65 GAGGCAGAATGCACAAGCCGGGGATC-GACCCGATCCCCCCTACGTGCTGTC-GATCCTACTACC
* * * * * *
22500985 GCAACCCTCGGTCCAGTCTGATCTTAGACTA
128 ACAACACTCGGTTCGGTCTGAGCTTAGACTG
22501016 GGAATGAACTCCATATGC
1 GGAATGAACTCCATATGC
22501034 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 54, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
157 75 0.28
158 153 0.57
159 36 0.13
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (158 bp):
GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCACTCAGCCAGCCGGAG
AGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTACTACCACA
ACACTCGGTTCGGTCTGAGCTTAGACTG
Found at i:22500960 original size:671 final size:673
Alignment explanation
Indices: 22499859--22501085 Score: 1737
Period size: 671 Copynumber: 1.8 Consensus size: 673
22499849 AACTCCGTAT
* * * *
22499859 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCTG
1 GCTTAAACATGGAATGAACTCCATATCCCTAAGCCAACCCACCAAACGAGCGTGCAGGCGCTCAG
** * * ** * *
22499924 TTGGCCGGAGAGGCAGAATGCATAAGCCGGGGATCGGTCCGGTCCCCCCCTGCGTGCTGTCGATA
66 TCAGCCGGAAAGGCAGAATGCATAAGCCAGGGATCGACCCGATCCCCCCCTACGTGCTGTCGATA
** *
22499989 CTGCTATCGTAAAACTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGTCA
131 CTGCTATCACAAAACTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
* *
22500054 ACCCACGAAACGAACGTTCGGGCACAGAGCCAATCGGAGAGGCATAATGCATAAGCCAGGGATCG
196 ACCCACAAAACGAACGTTCGGGCACAGAGCCAATCGGAGAGGCATAATGCACAAGCCAGGGATCG
* * *
22500119 ACCCGATCCCCTTCTGCGTGCTGCCGGTCCCACTGCCACAACCCTCGATCCGGTTGGGGCTTAGA
261 ACCCGATCCCCTTCTACGTGCTGCCGGTCCCACTGCCACAACCCTCGATACGGCTGGGGCTTAGA
* * * ***
22500184 CATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACAGGCGTGCGGGTGCTCAACCGGTTT
326 CATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACAAGCGTGCGGGCGCTCAACCAGCCG
* * *
22500249 GAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTACATGCTGCCGATCCTGCTGTT
391 GAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTACATGCTGCCGATCCTGCTGTC
* * *
22500314 TCAACCCTCAATCCAATCTGATCATAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAA
456 GCAACCCTCAATCCAATCTGATCATAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAA
22500379 CTCCGTATGCCTAAGTCAACACACGAAACAAGCGTGTAGGCACTCAGCCGGTCGAAGAGGCATAA
521 CTCCGTATGCCTAAGTCAACACACGAAACAAGCGTGTAGGCACTCAGCCGGTCGAAGAGGCATAA
22500444 TTCGTAAGTCGGAGATTAGCTCGATCCCCCTCTGCGTGCTGCCGATCCCGCTGTCGGTCCTGCTG
586 TTCGTAAGTCGGAGATTAGCTCGATCCCCCTCTGCGTGCTGCCGATCCCGCTGTCGGTCCTGCTG
22500509 CCATAATCCTCGATCCGGTTGGG
651 CCATAATCCTCGATCCGGTTGGG
* * * *
22500532 GCTTAAACATGGAATGATCTCCGTTATCCCTAAGCCAACCCACCAAATGAGCGTGCGGGCGCTCA
1 GCTTAAACATGGAATGAACTCC-ATATCCCTAAGCCAACCCACCAAACGAGCGTGCAGGCGCTCA
* ** *
22500597 GTCAGCC-GAAAGGTAGAATGTGTAAGCCAGGGATTGACCCGAT-CCCCCCTACGTGCTGTCGAT
65 GTCAGCCGGAAAGGCAGAATGCATAAGCCAGGGATCGACCCGATCCCCCCCTACGTGCTGTCGAT
* * *
22500660 CCTGCTATCACAACACTCGGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGT
130 ACTGCTATCACAAAACTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGT
* ** * *
22500724 CAACCCACAAAACGAGCGTTCGGGCATTGAGCCAGT-GGAGAGGCATAATGCACAAGCCGGGGAT
194 CAACCCACAAAACGAACGTTCGGGCACAGAGCCAATCGGAGAGGCATAATGCACAAGCCAGGGAT
* * * *
22500788 CGACCCGATCCCCCTT-TACGTGCTGTCGGTCCTACTGCCACAACCCTCGGTATGGCTGGGGCTT
259 CGACCCGAT-CCCCTTCTACGTGCTGCCGGTCCCACTGCCACAACCCTCGATACGGCTGGGGCTT
* * * *
22500852 AGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCGCTCAGCCAG
323 AGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACAAGCGTGCGGGCGCTCAACCAG
* * ** * * *
22500917 CCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGTTTC-GTCCCCCCTGCGTGCTGCTGATCCTGC
388 CCGGAGAGGCAGAATGCGCAAGCCGAGGATCAG-CCCGGTCCCCCCTACATGCTGCCGATCCTGC
** * *
22500981 TGTCGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGA
452 TGTCGCAACCCTCAATCCAATCTGATCATAGACTAGGAATGAACTCCATATGCTTAGACTGGGGA
* * * *
22501046 TGAACTCCGTTTGCCTAAGTCAACCCATGAAACGAGCGTG
517 TGAACTCCGTATGCCTAAGTCAACACACGAAACAAGCGTG
22501086 CGGACGCTCA
Statistics
Matches: 479, Mismatches: 71, Indels: 10
0.86 0.13 0.02
Matches are distributed among these distances:
671 278 0.58
672 113 0.24
673 47 0.10
674 41 0.09
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (673 bp):
GCTTAAACATGGAATGAACTCCATATCCCTAAGCCAACCCACCAAACGAGCGTGCAGGCGCTCAG
TCAGCCGGAAAGGCAGAATGCATAAGCCAGGGATCGACCCGATCCCCCCCTACGTGCTGTCGATA
CTGCTATCACAAAACTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
ACCCACAAAACGAACGTTCGGGCACAGAGCCAATCGGAGAGGCATAATGCACAAGCCAGGGATCG
ACCCGATCCCCTTCTACGTGCTGCCGGTCCCACTGCCACAACCCTCGATACGGCTGGGGCTTAGA
CATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACAAGCGTGCGGGCGCTCAACCAGCCG
GAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTACATGCTGCCGATCCTGCTGTC
GCAACCCTCAATCCAATCTGATCATAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAA
CTCCGTATGCCTAAGTCAACACACGAAACAAGCGTGTAGGCACTCAGCCGGTCGAAGAGGCATAA
TTCGTAAGTCGGAGATTAGCTCGATCCCCCTCTGCGTGCTGCCGATCCCGCTGTCGGTCCTGCTG
CCATAATCCTCGATCCGGTTGGG
Found at i:22504688 original size:26 final size:26
Alignment explanation
Indices: 22504638--22504690 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22504628 GTTGGCTTAG
* *
22504638 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
22504664 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
22504690 G
1 G
22504691 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:22504818 original size:195 final size:195
Alignment explanation
Indices: 22504418--22504853 Score: 499
Period size: 195 Copynumber: 2.2 Consensus size: 195
22504408 GAGTGCCCGT
* * *
22504418 ACGCTGGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCTTAGTCTAAGCATACAGAGTTC
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATACAGAGTTC
* * * * * * *
22504482 ATTCCCAATCTAAGATCGAGCCGGACCGAGGGTTGCAGCGGCAGGACCAGCAGTAAGATTAGTAG
65 ATTCCCAATCTAAGATCGAGCCGGACCAAGGGTTACAGCAGCAGGACCAACAGCAAGATGAGCAG
* * * * * * * *
22504547 CACATAGGGGGACCGGGTCGATCCCTGGCTTGCGGATTCTGCCTCTCCGTTCAGCTGAGCACCTG
130 CACAGAGGGGGACCGGGCCAATCCCCGGCTTACGCATTCTGCCTCTCCGATCAGATGAGCACCTG
22504612 C
195 C
22504613 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCA
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCA
* * *
22504678 TTCCCAATCTAAGATC-AGACCGGACCAAGGGTTAC-GACAGTAGGACCAATAGCAGGATCGA-C
66 TTCCCAATCTAAGATCGAG-CCGGACCAAGGGTTACAG-CAGCAGGACCAACAGCAAGAT-GAGC
* * * *
22504740 AGCACGCAGAGGGGGATCGGGCCAATCCCCGGCTTACTCATTCTAG-CTCTCTGATCGGATGAG-
128 AGCA--CAGAGGGGGACCGGGCCAATCCCCGGCTTACGCATTCT-GCCTCTCCGATCAGATGAGC
*
22504803 GCCT-C
190 ACCTGC
** *
22504808 ACTTTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATG
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
22504854 CGTAAGCCCC
Statistics
Matches: 205, Mismatches: 29, Indels: 14
0.83 0.12 0.06
Matches are distributed among these distances:
194 3 0.01
195 150 0.73
196 8 0.04
197 43 0.21
198 1 0.00
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (195 bp):
ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCA
TTCCCAATCTAAGATCGAGCCGGACCAAGGGTTACAGCAGCAGGACCAACAGCAAGATGAGCAGC
ACAGAGGGGGACCGGGCCAATCCCCGGCTTACGCATTCTGCCTCTCCGATCAGATGAGCACCTGC
Found at i:22505053 original size:26 final size:26
Alignment explanation
Indices: 22505017--22505067 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
22505007 GTTGACTTAG
*
22505017 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
22505043 GCATACAGAGTTCATTCCCAATCTA
1 GCATACAGAGTTCATCCCCAATCTA
22505068 CAATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:22505546 original size:26 final size:26
Alignment explanation
Indices: 22505516--22505568 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22505506 GTTGGCTTAG
22505516 GCATACAAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
*
22505542 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
22505568 G
1 G
22505569 ATCAGACCCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:22505949 original size:26 final size:26
Alignment explanation
Indices: 22505899--22505951 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
22505889 GTTGACTTAG
*
22505899 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
22505925 GCATACAGG-GTTCATTCCC-AATCTAA
1 GCATAC-GGAGTTCA-TCCCTAATCTAA
22505951 G
1 G
22505952 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:22506988 original size:26 final size:26
Alignment explanation
Indices: 22506959--22507009 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
22506949 TGACTTAGGC
22506959 ATACGAAGGTCATCCCCAGTCTAAGT
1 ATACGAAGGTCATCCCCAGTCTAAGT
* * *
22506985 ATACGAAGTTCATTCCTAGTCTAAG
1 ATACGAAGGTCATCCCCAGTCTAAG
22507010 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGGTCATCCCCAGTCTAAGT
Found at i:22507348 original size:26 final size:26
Alignment explanation
Indices: 22507312--22507363 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
22507302 TTGATATACT
22507312 CATACAGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
*
22507338 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
22507364 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:22507775 original size:159 final size:158
Alignment explanation
Indices: 22507344--22507781 Score: 401
Period size: 159 Copynumber: 2.8 Consensus size: 158
22507334 TAAGCATACA
* * *
22507344 GAGTTCATTCCCAGTCTAAGATCGGATCGGAC-CGAGTGTTACGATAGTC-GGATCGACAGCACG
1 GAGTTCATTCCCAGTCTAAGATCAGATCGGACTCGAGGGTTGCGATAG-CAGGATCGACAGCACG
* ** * * * *
22507407 CA-GGGGGATCGGGCTGATCCCCAACTTGTGCATTCTGCCTCGTCGGTCGACTGAGCGTCCGCAT
65 CAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTC-TCGGCCGGCTCAGCGTCCGCAT
*
22507471 GCCCGTTTCATGGGTTAGCTTAGGCATAGG
129 GCCCATTTCATGGGTTAGCTTAGGCATAGG
* * * * *
22507501 GAGTTCATT-CCATTTCTAAG-TCCCAG-TCGGACT-GAGGGTTGTGGTAGCAGGACCGGCAGCA
1 GAGTTCATTCCCA-GTCTAAGAT--CAGATCGGACTCGAGGGTTGCGATAGCAGGATCGACAGCA
* * * * * *
22507562 CGAAGAGGGGGACCGGGCCGATCCCTGGCTTACGCATT-TCGCATCTTCGGCCGGCTCAGTG-CC
63 CGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCT-GCCTC-TCGGCCGGCTCAGCGTCC
** * *
22507625 TGCATGCTTATTTCATGGGTT-GACTTATGCATATG
125 -GCATGCCCATTTCATGGGTTAG-CTTAGGCATAGG
* * * *
22507660 GAGTTCATTCCCAGTCTAAGATCAGACCAGACTCGAGGGTTGCGACAGCAGCATCGACAGCACGC
1 GAGTTCATTCCCAGTCTAAGATCAGATCGGACTCGAGGGTTGCGATAGCAGGATCGACAGCACGC
* * * *
22507725 AGGGGGGATCGGGCCAATCCCCGGCGTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
66 AGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT-CGGCCGGCTCAGCG
22507782 CCCGTACGCT
Statistics
Matches: 219, Mismatches: 46, Indels: 30
0.74 0.16 0.10
Matches are distributed among these distances:
156 5 0.02
157 44 0.20
158 10 0.05
159 129 0.59
160 31 0.14
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAGATCGGACTCGAGGGTTGCGATAGCAGGATCGACAGCACGC
AGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCGGCCGGCTCAGCGTCCGCATGC
CCATTTCATGGGTTAGCTTAGGCATAGG
Found at i:22507840 original size:26 final size:26
Alignment explanation
Indices: 22507811--22507863 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22507801 GTTGGCTTGG
22507811 GCATACCGAGTTCATT-CCATGTCTAA
1 GCATACCGAGTTCATTCCCA-GTCTAA
*
22507837 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
22507863 G
1 G
22507864 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:22508071 original size:25 final size:26
Alignment explanation
Indices: 22508020--22508071 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22508010 GTTGACTTAG
22508020 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
22508046 GCATACGGAGTTTATT-CCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22508071 G
1 G
22508072 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22508703 original size:26 final size:26
Alignment explanation
Indices: 22508673--22508725 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22508663 GTTGATTTTG
22508673 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
22508699 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
22508725 G
1 G
22508726 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:22509165 original size:158 final size:157
Alignment explanation
Indices: 22508699--22509200 Score: 576
Period size: 160 Copynumber: 3.2 Consensus size: 157
22508689 CCCAGTCTAA
*
22508699 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGATA
* * * * *
22508764 GCACACA-GGGGGACCGGGCCAATCCCCGGCTTACGCATTCTACCTCTCCGGCCGGTTGAGCGCC
65 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
* *
22508828 CGCACGCCCATTTCATGGGTTGGCTTAG
130 CGCACGCTCATTTCATGGGTTGACTTAG
* * * * * * * *
22508856 GCATAGGGAGTTCGTTCCATGTCTAAG-CCTGAGCCGGACCGAGGGTTGTGGCTGTGGGACCGAT
1 GCATACGGAGTTCATTCCA-GTCTAAGATCAGA-CCAGACCGAGGGTTGTGGCAGTAGGATCGAT
* * * * * * * *
22508920 AGCACGTAGAGAGGGGATCGGGTCGATCCCCAGCTTGCGTATTATGCCTCTCCGGTCGGCTCAGC
64 AGCACGCAG-G-GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC
* * * *
22508985 ACCCGCATGCTCATTTCTTGGGTTTACTTAG
127 GCCCGCACGCTCATTTCATGGGTTGACTTAG
* * * **
22509016 GCATACGGAGTTCATTCTTAATCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCATAATCGATA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGATA
* *
22509081 GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGGCTCTCCGGCCGGCTGAGCGCC
65 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
* *
22509146 CGCACGCTCGTTTCGTGGGTTGACTTAG
130 CGCACGCTCATTTCATGGGTTGACTTAG
**
22509174 GCATACAAAGTTCATTCCACGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
22509201 CCCCAGTCGG
Statistics
Matches: 277, Mismatches: 60, Indels: 15
0.79 0.17 0.04
Matches are distributed among these distances:
156 6 0.02
157 54 0.19
158 91 0.33
159 2 0.01
160 120 0.43
161 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGATAG
CACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCC
GCACGCTCATTTCATGGGTTGACTTAG
Found at i:22509387 original size:26 final size:26
Alignment explanation
Indices: 22509358--22509410 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22509348 GTTGACTTAG
22509358 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22509384 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22509410 G
1 G
22509411 ACCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22509663 original size:26 final size:26
Alignment explanation
Indices: 22509633--22509685 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22509623 GAGGGTTACG
22509633 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
22509659 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
22509685 G
1 G
22509686 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:22510203 original size:26 final size:26
Alignment explanation
Indices: 22510173--22510225 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22510163 GTTGGCTTAG
*
22510173 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22510199 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22510225 G
1 G
22510226 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22511239 original size:26 final size:26
Alignment explanation
Indices: 22511209--22511261 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22511199 GTTGGCTTAG
22511209 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
22511235 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
22511261 G
1 G
22511262 ATCAAATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:22512793 original size:26 final size:26
Alignment explanation
Indices: 22512742--22512794 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22512732 GTTGGCCTAG
* *
22512742 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGGCTAA
22512768 GCATACAGAGTTCATTCCCA-GGCTAA
1 GCATACAGAGTTCATT-CCATGGCTAA
22512794 G
1 G
22512795 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGGCTAA
Found at i:22513842 original size:26 final size:26
Alignment explanation
Indices: 22513808--22513858 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
22513798 TTGACTAAGG
22513808 CATACGGAGTTCATCCCCAGTCTAAA
1 CATACGGAGTTCATCCCCAGTCTAAA
* * *
22513834 CATATGGAGTTCATTCCTAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
22513859 GATCAAATCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAA
Found at i:22514704 original size:26 final size:26
Alignment explanation
Indices: 22514665--22514714 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
22514655 AGATTAGGCG
* *
22514665 TACGGAGTTGATT-CCATGTCTAAGCA
1 TACGAAGTTCATTCCCA-GTCTAAGCA
22514691 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
22514715 AGTTTGAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:22515375 original size:26 final size:26
Alignment explanation
Indices: 22515327--22515379 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22515317 GTTGACTTAG
*
22515327 GCATACAGAGTTCATCTCTAGTCTAA
1 GCATACAGAGTTCATCTCCAGTCTAA
*
22515353 GCATACGGAGTTCAT-TCCCAGTCTAA
1 GCATACAGAGTTCATCT-CCAGTCTAA
22515379 G
1 G
22515380 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCTCCAGTCTAA
Found at i:22515857 original size:26 final size:26
Alignment explanation
Indices: 22515827--22515879 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22515817 GTTGGCTTAG
22515827 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
22515853 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22515879 G
1 G
22515880 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22516241 original size:171 final size:170
Alignment explanation
Indices: 22515860--22516253 Score: 400
Period size: 171 Copynumber: 2.3 Consensus size: 170
22515850 TAAGCATATG
* * * *
22515860 GAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTGTGGTAGCAGGACTAGCAGCAGGAT
1 GAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGACCAGCAGCAGGAT
* * * * * * * *
22515925 TGATAGCACGCAGGGGGGGATCGGGCCGATCCCCAGCTTGAGCATTCTGCCTCTTCGATCGGTTG
66 CGACAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTAGAGCATTATGCCTCTTCGATCGGCTC
* * * * *
22515990 AGTGCTCGCATACTCGTTTCATGGGTTGGCTCAGGCATAC
131 AGTGCCCGAACACTCATTTCATGGGTTGACTCAGGCATAC
* * ** * * * **
22516030 GAAGTTAATT-CCATGTTTAAGCCCCA-ATCGAACTGAGGGTTGTGGCAGCAGGACCGGCAGTGG
1 G-AGTTCATTCCCA-GTCTAAG-ATCAGACCGAACCGAGGGTTGTGGCAGCAGGACCAGCAGCAG
* * *
22516093 GATCGACAGCATGCAGAGGGGGACCGGGCTGATCCCCGGCTA-AGGCATTATGCCT-TTCCGATC
63 GATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTAGA-GCATTATGCCTCTT-CGATC
* * *
22516156 GGCTCAGTGCCCGAACGCTCATTTCATGGGTTGACTTAGGCGTAC
126 GGCTCAGTGCCCGAACACTCATTTCATGGGTTGACTCAGGCATAC
* *
22516201 AGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGA
1 -GAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGA
22516254 TCGACAGCAT
Statistics
Matches: 176, Mismatches: 40, Indels: 15
0.76 0.17 0.06
Matches are distributed among these distances:
170 9 0.05
171 161 0.91
172 6 0.03
ACGTcount: A:0.22, C:0.24, G:0.31, T:0.23
Consensus pattern (170 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGACCAGCAGCAGGAT
CGACAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTAGAGCATTATGCCTCTTCGATCGGCTC
AGTGCCCGAACACTCATTTCATGGGTTGACTCAGGCATAC
Found at i:22516936 original size:26 final size:26
Alignment explanation
Indices: 22516905--22516957 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22516895 GTTGACTTAG
22516905 GCATACAAAGTTC-ATCCTCAGTCTAA
1 GCATACAAAGTTCTATCC-CAGTCTAA
* *
22516931 GCATACGAAGTTCTTTCCCAGTCTAA
1 GCATACAAAGTTCTATCCCAGTCTAA
22516957 G
1 G
22516958 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCTATCCCAGTCTAA
Found at i:22517257 original size:159 final size:159
Alignment explanation
Indices: 22517057--22517433 Score: 391
Period size: 159 Copynumber: 2.4 Consensus size: 159
22517047 CCGGCTGAAT
* * * *
22517057 GCCCGTACGCCCGGTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
1 GCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
*** ** * * *
22517122 GAAACTAATGGTTGAGGTAGCAGGACCGACAGCACGCAGA-GGGGGATCGGGCTGATCCCC-GAC
66 G-AACTAACAATTGAGACAGCAGGACCGACAGCACACAAAGGGGGGATCGGACTGATCCCCAG-C
** *
22517185 TTGCGCATTATGCCTCTTCGGTAGGCTCAGC
129 TTGCGCATTATGCCTCTTCGACAGACTCAGC
* * * * * ** *
22517216 GCCCGAACGCTCGTTTCATGGGTTGACTTAGGTATACGGAGTTCATTCCA-ATCTAAGATCGGAT
1 GCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCCAG
* * * * * *
22517280 CGAACTGACAATTGCGACAGTAGGATCGATAGCACACAAAGGGGGGATCGGACTGGTCCCCAGCT
65 CGAACTAACAATTGAGACAGCAGGACCGACAGCACACAAAGGGGGGATCGGACTGATCCCCAGCT
* * * *
22517345 TGCGCATTCTGCCTCTTCGACCGATTGAGC
130 TGCGCATTATGCCTCTTCGACAGACTCAGC
* *
22517375 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 GCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
22517434 ATACAGAGTT
Statistics
Matches: 174, Mismatches: 40, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
158 32 0.18
159 135 0.78
160 7 0.04
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
GCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
GAACTAACAATTGAGACAGCAGGACCGACAGCACACAAAGGGGGGATCGGACTGATCCCCAGCTT
GCGCATTATGCCTCTTCGACAGACTCAGC
Found at i:22517442 original size:26 final size:26
Alignment explanation
Indices: 22517406--22517458 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22517396 GTTGGCTTAG
*
22517406 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
22517432 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22517458 G
1 G
22517459 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22517638 original size:26 final size:26
Alignment explanation
Indices: 22517601--22517679 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
22517591 GTTGACTTAG
* *
22517601 GCATACGAAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22517627 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22517653 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22517679 G
1 G
22517680 ATCGAACTCG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22518723 original size:26 final size:26
Alignment explanation
Indices: 22518693--22518745 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22518683 GTTGACTTAG
22518693 GCATACAAAGTTCATCCCCAGCCTAA
1 GCATACAAAGTTCATCCCCAGCCTAA
* * *
22518719 GCATACTAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGCCTAA
22518745 G
1 G
22518746 ATGGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGCCTAA
Found at i:22519794 original size:26 final size:26
Alignment explanation
Indices: 22519755--22519806 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
22519745 TGACTTAGTC
22519755 ATACAGAGTCCATTCCCAGTCTAAGA
1 ATACAGAGTCCATTCCCAGTCTAAGA
* *
22519781 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTCCATTCCCAGTCTAAGA
22519807 TCGAATTGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (26 bp):
ATACAGAGTCCATTCCCAGTCTAAGA
Found at i:22520253 original size:158 final size:159
Alignment explanation
Indices: 22519898--22520281 Score: 427
Period size: 158 Copynumber: 2.4 Consensus size: 159
22519888 CTCTCTGACC
* * *
22519898 GGCTGAGCGCCCGCACGC-CTGTTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
1 GGCTGAGCGTCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* *
22519962 AGCCCCAGTCGGACCGAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAAGGGGACCGAGTCGAT
65 AGCCCCAGTCGAACCGAGGGTTGTGGTAGCAGGACCGACAGCACGCAGAAGGGGACCGAGTCGAT
* *
22520027 CCTCGGCTGGCACATTATGCCTCTCCAGTT
130 CCCCGGCTGACACATTATGCCTCTCCAGTT
* ** * * * * * *
22520057 GGCTCAGCGTCCGCAAACTCATTTCATGGGTTGACTTAGTCATATGGAGTTGATTCACA-GTCTA
1 GGCTGAGCGTCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTA
**** * * * *
22520121 AG-ATTGGATCGAACTGAGGGTTGTGGTAGCAGGATCGACAGCACGTAG-GGGGGACCGAGTC-A
65 AGCCCCAG-TCGAACCGAGGGTTGTGGTAGCAGGACCGACAGCACGCAGAAGGGGACCGAGTCGA
* * * * *
22520183 GTCCCCGGCTTACGCATTTTGTCTCTCCGGTT
129 -TCCCCGGCTGACACATTATGCCTCTCCAGTT
*
22520215 GGCTGAGCGTCCGCTCGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 GGCTGAGCGTCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
22520280 GC
66 GC
22520282 ATATGGAGTT
Statistics
Matches: 181, Mismatches: 38, Indels: 12
0.78 0.16 0.05
Matches are distributed among these distances:
157 3 0.02
158 90 0.50
159 85 0.47
160 3 0.02
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.25
Consensus pattern (159 bp):
GGCTGAGCGTCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCCCCAGTCGAACCGAGGGTTGTGGTAGCAGGACCGACAGCACGCAGAAGGGGACCGAGTCGATC
CCCGGCTGACACATTATGCCTCTCCAGTT
Found at i:22520290 original size:26 final size:26
Alignment explanation
Indices: 22520254--22520306 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22520244 GTTGGCTTAG
22520254 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
22520280 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
22520306 G
1 G
22520307 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:22521317 original size:26 final size:26
Alignment explanation
Indices: 22521287--22521339 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22521277 TTTCGCTTAG
*
22521287 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
22521313 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22521339 G
1 G
22521340 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22522935 original size:21 final size:21
Alignment explanation
Indices: 22522911--22522951 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
22522901 GCGGGATCGG
*
22522911 CAGCATGCAGAGGGGGACCGA
1 CAGCACGCAGAGGGGGACCGA
22522932 CAGCACGCAGAGGGGGACCG
1 CAGCACGCAGAGGGGGACCG
22522952 GGTAGATCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.27, G:0.44, T:0.02
Consensus pattern (21 bp):
CAGCACGCAGAGGGGGACCGA
Found at i:22523881 original size:26 final size:26
Alignment explanation
Indices: 22523851--22523903 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22523841 GTTGACTTAG
22523851 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
22523877 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22523903 G
1 G
22523904 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22524410 original size:158 final size:158
Alignment explanation
Indices: 22523877--22525181 Score: 686
Period size: 158 Copynumber: 8.2 Consensus size: 158
22523867 CCCAGTCTAA
*
22523877 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * *
22523942 GGACACAGGGGGGATCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGAATGGCTGAGCGCT
66 GCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCACATTCTGCCTCTCAGAATGGCTGAGCGCC
**
22524007 CGTACGCCCGTTTCATGGGTTGGCTTAG
131 CGTACGCTTGTTTCATGGGTTGGCTTAG
* * *** * * * *
22524035 GCATAAGGAGTTCATT-CGATGTCTAATCCCTAG-TCGGATCGAGGGTTGTGACAGC-GAGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCGAGGGTTGCGACAGCAG-GATCG
** * * * * * * ** *
22524097 GTAGCATGCAGAGGGGGACCGGG-CTGATCCTCGACTTGCGCATTATGCCTCTCCG-ATCAACTC
63 ACAGCACGCAG-GGGGGATCGGGTC-GATCCCCGACTTGCACATTCTGCCTCTCAGAAT-GGCTG
* * *
22524160 AGCACCCG-ACGCTTATTTCATGGGTTGACTTAG
125 AGCGCCCGTACGCTTGTTTCATGGGTTGGCTTAG
* * *
22524193 TCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * *
22524258 GCACGCAGGGGGGA-CTGGGTCGGTCCCCGACTTGCATATTCTGCCTCTCTAG-CTGGCTGAGCG
66 GCACGCAGGGGGGATC-GGGTCGATCCCCGACTTGCACATTCTGCCTCTC-AGAATGGCTGAGCG
* * *
22524321 CTCGTTCGCTTGTTTCGTGGGTTGGCTTAG
129 CCCGTACGCTTGTTTCATGGGTTGGCTTAG
* * * *
22524351 GCATACGTAGTTCATTCCCAGTCTAAGATCAGATCGGACAGAGGGTTACGACAGCAGGATC-AGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGA-C
* * * ** * * * **
22524415 AACACGCAGGAGAGGATCAGACCGAT-ACCGGCTTCCACATTCTGCCTCTCCAGCCT-GCTGAGC
65 AGCACGCAGG-GGGGATCGGGTCGATCCCCGACTTGCACATTCTGCCTCT-CAGAATGGCTGAGC
*
22524478 GCCCGCACGCTTGTTTCATGGGTTGGCTTAG
128 GCCCGTACGCTTGTTTCATGGGTTGGCTTAG
* ** * * * * *
22524509 GCATACGAAGTTCATT-CCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGTAGGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGACAGCAGGATC--
* * * * * * *
22524572 TAGGAAGATAGGCACACATAGAAGGGGATCGGG-CTGATCCCCGGCTTGCGCATTATGCCTCTCT
62 ------GACA-GCACGC--AG-GGGGGATCGGGTC-GATCCCCGACTTGCACATTCTGCCTCTCA
*** * * * * * **
22524636 GGCCGGCTGAGTGCCCGCACACTCGTTTCGTGGGTTCACTTAG
116 GAATGGCTGAGCGCCCGTACGCTTGTTTCATGGGTTGGCTTAG
* * * * * * *
22524679 GCATACAGAGTTCATCCCCAGTCTAAAATC-GAACTGGATCGAGGGTTGTGGCAGCAGGATCTG-
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGACAGCAGGATC-GA
** * * * * ** * * * *
22524742 TGGCATGCAAGAGGGATCGGGTTGATCCTTGGCTTACGA-ATTCTGCCTCTCTG-ATCGGTTGAG
64 CAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGC-ACATTCTGCCTCTCAGAAT-GGCTGAG
* * ** *
22524805 CGCCAGCACGCCCCGTTTCTTGGGTTGGCTTAG
127 CGCCCGTACG-CTTGTTTCATGGGTTGGCTTAG
* ** * * * ** *
22524838 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGTAGCGGGAAT-G
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGACAGCAGG-ATCG
* * * * * * *
22524900 GCAGCACGCAGAGGGGGACCAGG-CTGATCCCCAACTTGCGCATTATGCCTCTTCAGCCA--GCT
63 ACAGCACGCAG-GGGGGATCGGGTC-GATCCCCGACTTGCACATTCTGCCTC-TCAG-AATGGCT
* ** *** * * * *
22524962 CAATGCCTACACGCTCGTTTCGTGGGTTGACTTAT
124 GAGCGCCCGTACGCTTGTTTCATGGGTTGGCTTAG
* ** * * *
22524997 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAAGGTTGCGACAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * * * * *
22525062 GGACAG-AGGGGGGACCGAG-CTGATCCCCGGCTTACGCATTCTGCCTCTCCG-GTCGACTGGGC
66 GCAC-GCAGGGGGGATCGGGTC-GATCCCCGACTTGCACATTCTGCCTCTCAGAAT-GGCTGAGC
* **
22525124 GCCTGTACGCTCATTTCATGGGTTGGCTTAG
128 GCCCGTACGCTTGTTTCATGGGTTGGCTTAG
22525155 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
22525182 CATACAGAGT
Statistics
Matches: 870, Mismatches: 215, Indels: 124
0.72 0.18 0.10
Matches are distributed among these distances:
156 1 0.00
157 55 0.06
158 449 0.52
159 190 0.22
160 44 0.05
161 8 0.01
162 1 0.00
163 2 0.00
166 1 0.00
167 5 0.01
168 2 0.00
169 16 0.02
170 93 0.11
171 3 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCACATTCTGCCTCTCAGAATGGCTGAGCGCC
CGTACGCTTGTTTCATGGGTTGGCTTAG
Found at i:22525185 original size:26 final size:26
Alignment explanation
Indices: 22525155--22525207 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22525145 GTTGGCTTAG
*
22525155 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
22525181 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22525207 G
1 G
22525208 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22525912 original size:26 final size:25
Alignment explanation
Indices: 22525876--22525927 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
22525866 GTTGACTTAG
22525876 GCATACAGAGTTC-ATCCCCATCCTAA
1 GCATACAGAGTTCAAT-CCCAT-CTAA
*
22525902 GCATAGAGAGTTCAATCCCATCTAA
1 GCATACAGAGTTCAATCCCATCTAA
22525927 G
1 G
22525928 ATCGGATAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 5 0.21
26 17 0.71
27 2 0.08
ACGTcount: A:0.33, C:0.29, G:0.15, T:0.23
Consensus pattern (25 bp):
GCATACAGAGTTCAATCCCATCTAA
Found at i:22526260 original size:159 final size:156
Alignment explanation
Indices: 22525902--22526276 Score: 366
Period size: 159 Copynumber: 2.4 Consensus size: 156
22525892 CCCATCCTAA
* * * * *
22525902 GCATAGAGAGTTCAATCCCA-TCTAAGATCGGATAGGACCAAGGGTTACGACAGCAGGATTGGCA
1 GCATAGA-AGTTCATTCCCAGTCTAAGATCGGATAGGACCGAGGGTTGCGGCAGCAGGACTGGCA
* * * *
22525966 GCACGCAGGGGGATCGGACCGATCCCCGGCTTGCACATTCTGCCTCTACGACCTACTAAGCACCC
65 GCACGCAGGGGGACCGGACCGATCCCAGGCTTGCACATTATGCCTCTACGACCGACTAAGCACCC
*
22526031 GCATGCCCGTTTCGTGGGTTAGCTTAG
130 GCAAGCCCGTTTCGTGGGTTAGCTTAG
* * ** * * *
22526058 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCGGATCGAGGGTTGTGGCAGCAGGACTGG
1 GCATA-GAAGTTCATTCCCA-GTCTAAGATCGGA-TAGGACCGAGGGTTGCGGCAGCAGGACTGG
* * * * * *
22526121 CAGCACGTAGAGGGGGACCGGGCCGATCCTCAGG-TTGCGCATTATGCCTCTCCGATCGGCTCAA
63 CAGCACG--CAGGGGGACCGGACCGATCC-CAGGCTTGCACATTATGCCTCTACGACCGACT-AA
* * **
22526185 -CGCCCGTAAGCTTGTTTCGTGGGTT-GACTTAG
124 GCACCCGCAAGCCCGTTTCGTGGGTTAG-CTTAG
*
22526217 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCAGGAC
1 GCATA-GAAGTTCATTCCCAGTCTAAGATCGGATAGGACCGAGGGTTGCGGCAGCAGGAC
22526277 CAGCAGCAGG
Statistics
Matches: 173, Mismatches: 35, Indels: 19
0.76 0.15 0.08
Matches are distributed among these distances:
155 3 0.02
156 14 0.08
157 37 0.21
158 1 0.01
159 108 0.62
160 10 0.06
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATAGAAGTTCATTCCCAGTCTAAGATCGGATAGGACCGAGGGTTGCGGCAGCAGGACTGGCAG
CACGCAGGGGGACCGGACCGATCCCAGGCTTGCACATTATGCCTCTACGACCGACTAAGCACCCG
CAAGCCCGTTTCGTGGGTTAGCTTAG
Found at i:22533006 original size:159 final size:158
Alignment explanation
Indices: 22532500--22533007 Score: 461
Period size: 159 Copynumber: 3.2 Consensus size: 158
22532490 AGATCAGACT
** * * * *
22532500 AGACCGAGGGTTACGGCAGCAGGA-TCAGCAGCATGTAG-GGGGGACCGGGCCAATCCCCGGCTT
1 AGACCGAGGGTTGTGGCAGTAGGACTGA-CAGCACGTAGAGGGGGACCGGGCCGAT-CCCGGCTT
* * * *
22532563 GCACATTCTGCCTCTCTGGCTGGCTGAATGCCCGCACG-TCCATTTCATGGGTTGGCTTAGGCAT
64 GCGCATTCTGCCTCTCTGGTTGGCTGAGTGCCCGCACGCT-CGTTTCATGGGTTGGCTTAGGCAT
** *
22532627 AGGGAGTTCATTCCATGTCTAAGCCCTAGTC
128 ACAGAGTTCATTCCATGTCTAAGCCCAAGTC
* * * * * * * * *
22532658 GGATCGACGATTGTGGCAGTTGGACCGACAGTACGTAGAGGGGGATCGGGTCGATTCCCGGCTTG
1 AGACCGAGGGTTGTGGCAGTAGGACTGACAGCACGTAGAGGGGGACCGGGCCGA-TCCCGGCTTG
* * * * * * * * *
22532723 CGTATTATGCCTCT-TCGATCGGCTTAGTGCCCGTACGCTTGTTTCATGGGTTGACTTATGCATA
65 CGCATTCTGCCTCTCT-GGTTGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
** **
22532787 CAGAGTTCATTCCCA-GTCTAAGATCAAACC
129 CAGAGTTCATT-CCATGTCTAAGCCCAAGTC
** *
22532817 AGACCGAGGGTTACGGTAGTAGGA-TCGACAGCACGTAGAGGGGGACCGGGCCGATCCTCGGCTT
1 AGACCGAGGGTTGTGGCAGTAGGACT-GACAGCACGTAGAGGGGGACCGGGCCGATCC-CGGCTT
* * * *
22532881 GCGCATTCTGCCTCTCTGGTTGACTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATT
64 GCGCATTCTGCCTCTCTGGTTGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
**
22532946 CAGAGTTCATTCCATGTCTAAGCCCCGGTC
129 CAGAGTTCATTCCATGTCTAAGCCCAAGTC
* * * * *
22532976 AAACCAAGGGCTGTGGCAGCAAGACTGACAGC
1 AGACCGAGGGTTGTGGCAGTAGGACTGACAGC
22533008 GGGATCGGTA
Statistics
Matches: 265, Mismatches: 74, Indels: 21
0.74 0.21 0.06
Matches are distributed among these distances:
158 31 0.12
159 227 0.86
160 7 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
AGACCGAGGGTTGTGGCAGTAGGACTGACAGCACGTAGAGGGGGACCGGGCCGATCCCGGCTTGC
GCATTCTGCCTCTCTGGTTGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACA
GAGTTCATTCCATGTCTAAGCCCAAGTC
Found at i:22533148 original size:26 final size:26
Alignment explanation
Indices: 22533111--22533163 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22533101 GTTGACATAG
22533111 GCATACGAAGTTCATAT-CCAGTCTAA
1 GCATACGAAGTTCAT-TCCCAGTCTAA
*
22533137 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22533163 G
1 G
22533164 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22534497 original size:158 final size:158
Alignment explanation
Indices: 22534032--22534524 Score: 442
Period size: 159 Copynumber: 3.1 Consensus size: 158
22534022 TAAGCATATG
* * *
22534032 GAGTTCATTCC-TAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCAGGATC-AGCAGCAAG
1 GAGTTCATTCCAT-GTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACG
* *** * * * ** *
22534095 CACGGGGGA-CGAACCGAT-CCTCGCTTACACATTCTGCCTCTTCGGCTGGCTGAACGCCCGCAC
64 CAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTATCTTTTCGGCTGGCTGAACGCCCGCAC
** *
22534158 ACTTGTTTCGTGGGTTGGCTTAGGCATAGA
129 ACTCATTTCGTGGGTTGGCTTAGGCATACA
** ** * * * *
22534188 GAGTTCATTCCATGTCTAAGCCCTAG-CCATACCGAGGGTTGTGGCAGTAGGACCGACAGCACGT
1 GAGTTCATTCCATGTCTAAGATC-AGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * ** * * * * * * *
22534252 AGAGGGGGATCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCGACTGGCTCAATGCCTGAAC
65 AG-GGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTATCTTTTCGGCTGGCTGAACGCCCGCAC
* * *
22534317 GCTCATTTTGTGGGTTGACTTAGGCATACA
129 ACTCATTTCGTGGGTTGGCTTAGGCATACA
* ** *
22534347 GAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGTGTTGCGATAGCAGGATCGATAGCACGC
1 GAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* *
22534411 AGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTATCTTTTCGG-TCGACTGAGCGCCCGCAC
65 AGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTATCTTTTCGGCT-GGCTGAACGCCCGCAC
* * *
22534475 ACTCATTTGGTGGGTTGGCTTAGGGATACG
129 ACTCATTTCGTGGGTTGGCTTAGGCATACA
*
22534505 GAGATCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
22534525 CCCCAACCGG
Statistics
Matches: 262, Mismatches: 65, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
156 47 0.18
157 14 0.05
158 94 0.36
159 104 0.40
160 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
GGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTATCTTTTCGGCTGGCTGAACGCCCGCACAC
TCATTTCGTGGGTTGGCTTAGGCATACA
Found at i:22534553 original size:158 final size:159
Alignment explanation
Indices: 22534124--22534564 Score: 417
Period size: 158 Copynumber: 2.8 Consensus size: 159
22534114 CTCGCTTACA
* * * * **
22534124 CATTCTGCCTCTTCGGCTGGCTGAACGCCCGCACACTTGTTTCGTGGGTTGGCTTAGGCATA-GA
1 CATTATGCCTCTCCGACTGACTGAACGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACG-
* * ** * * *
22534188 GAGTTCATTCCATGTCTAAGCCCTAGCCATACCGAGGGTTGTGGCAGTAGGACCGACAGCACGTA
65 GAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGCAGGACCGACAGCACGCA
*
22534253 GAGGGGGATCGGGTCGATCCCCGGCTTGTG
130 GAGGGGGATCGGGTCGATCCCCGGCTTGCG
* * * * * * * * *
22534283 CATTATGCCTCTCCGACTGGCTCAATGCCTGAACGCTCATTTTGTGGGTTGACTTAGGCATACAG
1 CATTATGCCTCTCCGACTGACTGAACGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGG
** * * * * *
22534348 AGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGTGTTGCGATAGCAGGATCGATAGCACGC
66 AGTTCATT-CCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGTAGCAGGACCGACAGCACGC
*
22534411 AG-GGGGGATCGGGTCGATCCCTGGCTTGCG
129 AGAGGGGGATCGGGTCGATCCCCGGCTTGCG
* * * * * * *
22534441 CATTCTAT-CTTTTCGGTC-GACTGAGCGCCCGCACACTCATTTGGTGGGTTGGCTTAGGGATAC
1 CA-T-TATGCCTCTCCGACTGACTGAACGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATAC
* ** *
22534504 GGAGATCATTCCATGTCTAAGCCCCAACCGGATTGAGGGTTATGGTAGCAGGACCGACAGC
64 GGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGCAGGACCGACAGC
22534565 GGGATCGACA
Statistics
Matches: 220, Mismatches: 55, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.01
158 106 0.48
159 105 0.48
160 6 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
CATTATGCCTCTCCGACTGACTGAACGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGCAGGACCGACAGCACGCAG
AGGGGGATCGGGTCGATCCCCGGCTTGCG
Found at i:22534699 original size:26 final size:26
Alignment explanation
Indices: 22534669--22534719 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
22534659 GTTGACTTAG
*
22534669 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
22534695 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
22534720 TGATCGGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22534997 original size:159 final size:159
Alignment explanation
Indices: 22534734--22535198 Score: 380
Period size: 158 Copynumber: 2.9 Consensus size: 159
22534724 CGGATCGAAT
* * * ** * * * **
22534734 CGAGGGTTGCAACAGCAGGATCGGTAGCATGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCAT
1 CGAGGGTTACGACAACAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTATGCAT
* ** * ** ** * * * * * *
22534799 TCTGCCTCTCAAATCGGCTGAGCACCCGCATGCCTGTTTCGTGGGTTGGTTTAGGCATAGGGAGT
66 TATGCCTCTCCGACCAACACAGCGCCCGAACGCTTGTTTCGTGGGTTGGCTTAGGCATAAGGAGT
* * * *
22534864 TCATTCCATGTCTAAGCCCCAG-TCGGAT
131 TCATTCCATGTCTAAGCACCAGACCAGAC
* * * ** * * *
22534892 CGAGGGTTATGGCAACGGGATCGGTAGCACGCAGAGGGGGATCGGGTCGATCCCTGGCTTATGCA
1 CGAGGGTTACGACAACAGGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTATGCA
** * * * * *
22534957 TTATGCCTCTCCGACCGGCTCTGTGCCCGAACG-TTCGTTTCATGGGTTGACTTAGGCATAAGGA
65 TTATGCCTCTCCGACCAACACAGCGCCCGAACGCTT-GTTTCGTGGGTTGGCTTAGGCATAAGGA
*
22535021 GTTCATTCCCA-GTCTAAG-ATCAGACCAGAC
129 GTTCATT-CCATGTCTAAGCACCAGACCAGAC
* * ** *
22535051 CGAGTGTTACGATAGTAGTATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTATGCAT
1 CGAGGGTTACGACAACAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTATGCAT
* * * * * *
22535116 TCTGCCTCTCCGGCCAACAGAGCGCCTGCACGCTTGTTTCGTGGGTTGGCTTAGGCATATGGAGT
66 TATGCCTCTCCGACCAACACAGCGCCCGAACGCTTGTTTCGTGGGTTGGCTTAGGCATAAGGAGT
22535181 TCATTCCATGTCTAAGCA
131 TCATTCCATGTCTAAGCA
22535199 TACGGAGTTC
Statistics
Matches: 242, Mismatches: 58, Indels: 13
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.01
158 119 0.49
159 117 0.48
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
CGAGGGTTACGACAACAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTATGCAT
TATGCCTCTCCGACCAACACAGCGCCCGAACGCTTGTTTCGTGGGTTGGCTTAGGCATAAGGAGT
TCATTCCATGTCTAAGCACCAGACCAGAC
Found at i:22535206 original size:26 final size:26
Alignment explanation
Indices: 22535170--22535222 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22535160 GTTGGCTTAG
*
22535170 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22535196 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22535222 G
1 G
22535223 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22535395 original size:26 final size:26
Alignment explanation
Indices: 22535366--22535418 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22535356 GTTGACTTAG
22535366 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22535392 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22535418 G
1 G
22535419 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22535776 original size:159 final size:155
Alignment explanation
Indices: 22535392--22535892 Score: 465
Period size: 159 Copynumber: 3.2 Consensus size: 155
22535382 CCCAGTCTAA
* * * *
22535392 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACTAAGGGTTGCGACAACAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGA-CGGACTAAGGGTTGCGGCAGCAGGATCGAT
* * * * *
22535456 AGCACGCAGGGGGAC-CGAGCCAATCCCCGGA-TTGCGCATTATGCCTCTCCGGTCGACTGAGCG
64 AGCACGCAGGGGG-CTCGGGCCGAT-CCCTGACTTGCGCATTATGCCTCTCC-GTCGGCTCAGCG
* *
22535519 CCCGCACACCCGTTTCGTGGGTTGGCTTAG
126 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * * * *
22535549 GCATA-GTGAGTTCATTCCATGTCTAAGCCCCAGACGAACTGAGGGTTGTGGCAGC-GAGACCGG
1 GCATACG-GAGTTCATTCCATGTCTAAG-ATCAGACGGACTAAGGGTTGCGGCAGCAG-GATCGA
**
22535612 TAGCACGCAGAAGGGGCTCGGGTTGATCCCTGACTTGCGCATTATGCCTCTCCAGTCGGCTCAGC
63 TAGCACGCAG--GGGGCTCGGGCCGATCCCTGACTTGCGCATTATGCCTCTCC-GTCGGCTCAGC
* * *
22535677 GCCCGTACGCTTGTTTCGTGGGTTGACTTAG
125 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
22535708 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACTAAGGTTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGA-CGGACTAAGGGTTGCGGCAGCAGGATCGAT
* * * * * * * * * * *
22535772 AGCACGTAGGGGGGATCAGGCCGGTCCCTGACTTGTGCATTCTACCTCTCCGACCAGTTCAGAGC
64 AGCACGCA-GGGGGCTCGGGCCGATCCCTGACTTGCGCATTATGCCTCTCCG-TCGGCTCAGCGC
* *
22535837 CCGCATGCTCGTTTCATGGGTTGGCTTAG
127 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
22535866 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
22535893 CATACAAAGT
Statistics
Matches: 276, Mismatches: 53, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
156 5 0.02
157 54 0.20
158 100 0.36
159 111 0.40
160 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACGGACTAAGGGTTGCGGCAGCAGGATCGATAG
CACGCAGGGGGCTCGGGCCGATCCCTGACTTGCGCATTATGCCTCTCCGTCGGCTCAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:22535896 original size:26 final size:26
Alignment explanation
Indices: 22535866--22535918 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22535856 GTTGGCTTAG
*
22535866 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAAAGTTCATTCCATGTCTAA
* *
22535892 GCATACAAAGTTGATTCCCTGTCTAA
1 GCATACAAAGTTCATTCCATGTCTAA
22535918 G
1 G
22535919 ATCAAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCATGTCTAA
Found at i:22535918 original size:696 final size:698
Alignment explanation
Indices: 22534619--22536116 Score: 1868
Period size: 696 Copynumber: 2.2 Consensus size: 698
22534609 ATGCATTATG
* ** * *
22534619 CCTCTTCGACCGGCTGAGTGCCCGCACGCTTGTTTCATGTGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGACCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * *
22534684 CCTCAGTCTAAGCATACAGAGTTCATTCCCAGTCTATGATCGGATCGAATCGAGGGTTGCAACAG
66 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCAAGGGTTGCAACAA
* * * * * * * *
22534749 CAGGATCGGTAGCATGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCAAATC
131 CAGGATCGATAGCACGCAGGGGGGACCGAGCCAATCCCCGGATTGCGCATTATGCCTCTCAAATC
* ** * *
22534814 GGCTGAGCACCCGCATGCCTGTTTCGTGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAA
196 GACTGAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * * *
22534879 GCCCCAGTCGGATCGAGGGTTATGGCAACGGGATCGGTAGCACGCAGAGGGGGATCGGGTCGATC
261 GCCCCAGACGAATCGAGGGTTATGGCAACGAGACCGGTAGCACGCAGAAGGGGATCGGGTCGATC
* * * *
22534944 CCTGGCTTATGCATTATGCCTCTCCGACCGGCTCTGTGCCCGAACGTTCGTTTCATGGGTTGACT
326 CCTGACTTACGCATTATGCCTCTCCGACCGGCTCAGCGCCCGAACGTTCGTTTCATGGGTTGACT
* * *
22535009 TAGGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGTGTTACGATAGTAGTATCG
391 TAGGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGTGTTACGATAGCAGGATCG
* * * *
22535074 ACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTATGCATTCTGCCTCTCCGGCCAACAGAGC
456 ACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTATGCATTCTACCTCTCCGACCAACAGAGC
* * ** **
22535139 GCCTGCACGCTTGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGG
521 GCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAA
** * * * * *
22535204 AGTTCATTCCCAGTCTAAGATCGGACCGGA-CTAAGGGTTGCGATAGCAGGAC-CAGCAGCAGGA
586 AGTTCATTCCCAGTCTAAGATCAAACCGAATC-AAGGGTTACGACAGCAAGACTCA-CAGCAGCA
**
22535267 TCGACAGCACATA-AGGGGGAGCGGGCCAATCCTTAGCTTACGCATTCTA
649 TCGACAGCACATAGAGGGGGAGCGGGCCAATCCCCAGCTTACGCATTCTA
* ** *
22535316 CCTCTCTGGTCGGCTGAGTGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGACCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* *
22535381 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-AAGGGTTGCGACA
66 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GAATCAAGGGTTGCAACA
***
22535445 ACAGGATCGATAGCACGCA-GGGGGACCGAGCCAATCCCCGGATTGCGCATTATGCCTCTCCGGT
130 ACAGGATCGATAGCACGCAGGGGGGACCGAGCCAATCCCCGGATTGCGCATTATGCCTCTCAAAT
* *
22535509 CGACTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGTGAGTTCATTCCATGTCTA
195 CGACTGAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * * *
22535574 AGCCCCAGACGAA-CTGAGGGTTGTGGCAGCGAGACCGGTAGCACGCAGAAGGGGCTCGGGTTGA
260 AGCCCCAGACGAATC-GAGGGTTATGGCAACGAGACCGGTAGCACGCAGAAGGGGATCGGGTCGA
* * * *
22535638 TCCCTGACTTGCGCATTATGCCTCTCC-AGTCGGCTCAGCGCCCGTACGCTT-GTTTCGTGGGTT
324 TCCCTGACTTACGCATTATGCCTCTCCGA-CCGGCTCAGCGCCCGAACG-TTCGTTTCATGGGTT
* * * * * *
22535701 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTAAG-GTTTGCGGTAGCAG
387 GACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGTG-TTACGATAGCAG
* * * * *
22535765 GATCGACAGCACGTAGGGGGGATCAGGCCGGTCCCTGACTTGTGCATTCTACCTCTCCGACCAGT
451 GATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTATGCATTCTACCTCTCCGACCA--
* *
22535830 TCAGAGC-CC-GCATGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
514 ACAGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
* * * *
22535893 CATACAAAGTTGATTCCCTGTCTAAGATCAAACCGAATCAAGGTTTACGACAGCAAGACTTACAG
579 CATACAAAGTTCATTCCCAGTCTAAGATCAAACCGAATCAAGGGTTACGACAGCAAGACTCACAG
* ** * * * * * *
22535958 CTGCATCGGTAGCACGTAGTGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTG
644 CAGCATCGACAGCACATAGAGGGGGAGCGGGCCAATCCCCAGCTTACGCATTCTA
** * *
22536013 CCTCTCCGACCGGCTGAGCACCTGCACGCTCATTTCGTGGGTTGACTTAGGCATAC-GAATTCAT
1 CCTCTCCGACCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * *
22536077 CTCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGAT
66 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
22536117 TGAACTGGAT
Statistics
Matches: 680, Mismatches: 111, Indels: 21
0.84 0.14 0.03
Matches are distributed among these distances:
695 3 0.00
696 460 0.68
697 208 0.31
698 9 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (698 bp):
CCTCTCCGACCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCAAGGGTTGCAACAA
CAGGATCGATAGCACGCAGGGGGGACCGAGCCAATCCCCGGATTGCGCATTATGCCTCTCAAATC
GACTGAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
GCCCCAGACGAATCGAGGGTTATGGCAACGAGACCGGTAGCACGCAGAAGGGGATCGGGTCGATC
CCTGACTTACGCATTATGCCTCTCCGACCGGCTCAGCGCCCGAACGTTCGTTTCATGGGTTGACT
TAGGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGTGTTACGATAGCAGGATCG
ACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTATGCATTCTACCTCTCCGACCAACAGAGC
GCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAA
AGTTCATTCCCAGTCTAAGATCAAACCGAATCAAGGGTTACGACAGCAAGACTCACAGCAGCATC
GACAGCACATAGAGGGGGAGCGGGCCAATCCCCAGCTTACGCATTCTA
Found at i:22536102 original size:26 final size:25
Alignment explanation
Indices: 22536063--22536114 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
22536053 GTTGACTTAG
22536063 GCATACGAATTCA-TCTCCAGTCTAA
1 GCATACGAATTCATTC-CCAGTCTAA
*
22536088 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAA-TTCATTCCCAGTCTAA
22536114 G
1 G
22536115 ATTGAACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 8 0.33
26 14 0.58
27 2 0.08
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (25 bp):
GCATACGAATTCATTCCCAGTCTAA
Found at i:22536690 original size:171 final size:169
Alignment explanation
Indices: 22536356--22537522 Score: 488
Period size: 171 Copynumber: 6.9 Consensus size: 169
22536346 TGATCGCCCG
* *
22536356 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAG-ATCAGACCAGA
1 CACGCTCGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATT-CCAGTCTAAGCACCAGACCAGA
* * * * *
22536420 CCGAGGGTTGCGTAGTAGGACCAGTAGCAGGATCGACAACCCGCAAAGGGGGATCGGGCCGATCC
64 CCAAGGGTTGCGTAGCAGGACCAGCAGCAGGATCGACAACACGCAAAGGGGGACCGGGCCGATCC
* *
22536485 CCAGCTTACGCATTTTGCCTCTCCGACTGACTGAGCACCCA
129 CCAGCTTACGCATTATGCCTCTCCGACCGACTGAGCACCCA
* * *
22536526 CACGCTCGTTTCTTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGA
1 CACGCTCGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCA-GTCTAAGCACCAGACCAGA
* * * * *
22536590 CCAAGGGTTGTGATAGCGGGACCAGCAG-TGAGATCGACAGCACG-AAGAGGGGGACCGGGCTGA
64 CCAAGGGTTGCG-TAGCAGGACCAGCAGCAG-GATCGACAACACGCAA-AGGGGGACCGGGCCGA
* * *
22536653 TCCCC-GACTTGCGCATTATGCCTCTCTGACCGACTGAGCACCCG
126 TCCCCAG-CTTACGCATTATGCCTCTCCGACCGACTGAGCACCCA
* * **
22536697 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTC
1 CACGCTCGTTTCATGGGTTG-CTTAGGCATACGGAGTTCAT-TCCAGTCTAAGC---ACCAG---
* * * * * * ** * * * * *
22536762 ATTCCCAGTCTAA-GATCAGACCGGATCGAGGGTTGCGGCAGTAGGATCGGCAGCACGC-AGGGG
58 A---CCAGACCAAGGGT-TG--CGTAGC-A-GG-ACCAGCAGCAGGATCGACAACACGCAAAGGG
* * ** * * * * * *
22536825 GGACCAGGCCGATCCCCGGCTTGTGTATTCTGCCTCTCCGATCGGCTAAGCACCCG
114 GGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGACTGAGCACCCA
* * *
22536881 CACGCCCGTTTCATGGGTTGGCTTAGGCATA-GGTAGTTCATTCCATGTCTAAGCCCCA-ACCGG
1 CACGCTCGTTTCATGGGTT-GCTTAGGCATACGG-AGTTCATTCCA-GTCTAAGCACCAGACCAG
* * * * * * * * * *
22536944 ATCGA-GCTT---T-G-TGG--CAGCA--A-GACCGACAGCATGCAGAGGGGGACCAGGTCGATC
63 ACCAAGGGTTGCGTAGCAGGACCAGCAGCAGGATCGACAACACGCAAAGGGGGACCGGGCCGATC
* ** * * ** * *
22536998 CCCGGCTTGTGCATTATGCCTCTCCGGCAGGGTCAGCACCCG
128 CCCAGCTTACGCATTATGCCTCTCCGACCGACTGAGCACCCA
* * * * * *
22537040 CACGCTCGTTTCCGTGAGTTGACTTAGGCATACGGAGTTCATGCCCAGTCTAAG-ATCGGACCGG
1 CACGCTCGTTT-CATGGGTTG-CTTAGGCATACGGAGTTCAT-TCCAGTCTAAGCACCAGACCAG
* * * * * * ** * * *
22537104 ACCGAGGG-T---TA-C--G---A-TAGTAGGATCGATAGCACGGAGGGGGGGACTGGGTCGGTC
63 ACCAAGGGTTGCGTAGCAGGACCAGCAGCAGGATCGACAACACGCAAAGGGGGACCGGGCCGATC
* * * * *
22537158 CCCAGCTT--GCAATTTCTACCTCTCCGACC-AGCGGATCACCCG
128 CCCAGCTTACGC-A-TTATGCCTCTCCGACCGA-CTGAGCACCCA
* * * *
22537200 CACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCAAAG-ATCGGACCAGA
1 CACGCTCGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCC-AGTCTAAGCACCAGACCAGA
** * * ** * * * * * *
22537264 CTGAGGGTTACCGCAATAGGACCAGCAGCAAGATCGACAGCACACAGAGGGGGACCGAGCCAATC
64 CCAAGGGTT-GCGTAGCAGGACCAGCAGCAGGATCGACAACACGCAAAGGGGGACCGGGCCGATC
* * * * * *** *
22537329 CCCAGCTTACGCATTCTGCCTCTCCGGCTGGCTAAGCGTTCG
128 CCCAGCTTACGCATTATGCCTCTCCGACCGACTGAGCACCCA
* *
22537371 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CC-GA
1 CACGCTCGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCA-GTCTAAGCACCAGACCAG-
* * * * ** * * * * *
22537434 ACCGAGGGTTGTGACAGCAGGA-CTGACAGTGGGATTCG-CAGCACGCAGAGGGGCACCAGGCTG
63 ACCAAGGGTTGCG-TAGCAGGACCAG-CAGCAGGA-TCGACAACACGCAAAGGGGGACCGGGCCG
* *
22537497 ATCCCCGGCTTGCGCATTATGCCTCT
125 ATCCCCAGCTTACGCATTATGCCTCT
22537523 ATGGCTGGCC
Statistics
Matches: 766, Mismatches: 163, Indels: 135
0.72 0.15 0.13
Matches are distributed among these distances:
157 1 0.00
158 16 0.02
159 116 0.15
160 105 0.14
161 10 0.01
164 3 0.00
167 1 0.00
169 3 0.00
170 71 0.09
171 289 0.38
172 9 0.01
173 2 0.00
174 8 0.01
177 1 0.00
180 2 0.00
181 8 0.01
182 2 0.00
183 6 0.01
184 92 0.12
185 20 0.03
186 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (169 bp):
CACGCTCGTTTCATGGGTTGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCACCAGACCAGACC
AAGGGTTGCGTAGCAGGACCAGCAGCAGGATCGACAACACGCAAAGGGGGACCGGGCCGATCCCC
AGCTTACGCATTATGCCTCTCCGACCGACTGAGCACCCA
Found at i:22536759 original size:26 final size:26
Alignment explanation
Indices: 22536723--22536775 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22536713 GTTGACTTAG
*
22536723 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
*
22536749 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
22536775 G
1 G
22536776 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:22537144 original size:159 final size:158
Alignment explanation
Indices: 22536749--22537423 Score: 524
Period size: 159 Copynumber: 4.2 Consensus size: 158
22536739 CCCAGTCTAA
* * * * *
22536749 GCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGTAGGATCGACA
* * * *
22536814 GCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGTGTATTCTGCCTCTCCGATC-GGCTAAGCAC
66 GCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCAGGGT-AGCAC
*
22536878 CCGCACGCCCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
** ** * ** ** * * *
22536907 GCATA-GGTAGTTCATT-CCATGTCTAAGCCCCAACCGGATCGAGCTTTGTGGCAGCAAGACCGA
1 GCATACGG-AGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTACGGCAGTAGGATCGA
* * *
22536970 CAGCATGCAGAGGGGGACCAGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCG-GCAGGGTCAG
64 CAGCACGCAG-GGGGGACCAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCAGGGT-AG
* * *
22537034 CACCCGCACGCTCGTTTCCGTGAGTTGACTTAG
127 CACCCGCACGCTCGTTT-CATGGGTTGGCTTAG
* ** *
22537067 GCATACGGAGTTCATGCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGATAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGTAGGATCGACA
* ** * * * *
22537132 GCACGGAGGGGGGGACTGGGTCGGTCCCCAGC-T-TGCAATTTCTACCTCTCCGACCAGCGG-AT
66 GCACGCA-GGGGGGACCAGGTCGATCCCCGGCTTGTGC-A-TTCTGCCTCTCCGACCAG-GGTAG
*
22537194 CACCCGCACACTCGTTTCATGGGTTGGCTTAG
127 CACCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
22537226 GCATACGGAGTTCATTCCTAGTCAAAGATCGGACCAGACTGAGGGTTACCGCAATAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTA---C----GG--CAGTA
* * * * **
22537291 GCAAGATCGACAGCACACAGAGGGGGACC-GAGCCAATCCCCAGCTTACGCATTCTGCCTCTCCG
57 G---GATCGACAGCACGCAG-GGGGGACCAG-GTCGATCCCCGGCTTGTGCATTCTGCCTCTCCG
* * * *** *
22537355 -GCTGGCTAAGCGTTCGCACGCTCGTTTCGTGGGTTGGCTTAG
117 ACCAGGGT-AGCACCCGCACGCTCGTTTCATGGGTTGGCTTAG
22537397 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
22537424 CCCCAGCCGA
Statistics
Matches: 406, Mismatches: 80, Indels: 49
0.76 0.15 0.09
Matches are distributed among these distances:
157 5 0.01
158 58 0.14
159 118 0.29
160 106 0.26
161 9 0.02
162 3 0.01
166 1 0.00
168 4 0.01
169 1 0.00
170 6 0.01
171 91 0.22
172 2 0.00
173 2 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGTAGGATCGACA
GCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCAGGGTAGCACC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:22537631 original size:26 final size:26
Alignment explanation
Indices: 22537581--22537633 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22537571 GTTGGCTTAG
*
22537581 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
22537607 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
22537633 G
1 G
22537634 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:22539852 original size:26 final size:26
Alignment explanation
Indices: 22539823--22539875 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22539813 GTTGGCTTAG
* *
22539823 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
22539849 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22539875 G
1 G
22539876 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22540388 original size:26 final size:26
Alignment explanation
Indices: 22540359--22540411 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22540349 GTTGGCTTAG
*
22540359 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22540385 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22540411 G
1 G
22540412 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22541110 original size:26 final size:26
Alignment explanation
Indices: 22541081--22541133 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22541071 GTTGACTTAG
*
22541081 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
22541107 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22541133 G
1 G
22541134 ATTGAATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22541467 original size:159 final size:157
Alignment explanation
Indices: 22541107--22541470 Score: 401
Period size: 159 Copynumber: 2.3 Consensus size: 157
22541097 CCCAGTCTAA
* * * * * * *
22541107 GCATACGGAGTTCATTCCTAGTCTAAGATTGAATCAGACCGAGGGTTGCGATAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAA-ATCGAACCGGACCGAGGGTTACGATAGCAGGACCGACA
* ** * * *
22541172 GCACGCAAGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCGTCTCCGACTGGCTGAGCACC
65 GCACGAAAGGGGGATCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGACTGGCTCAGCACC
* * *
22541237 CGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CACACGCCCATTTCGTGGGTTGACTTAG
* ** * * * * *
22541265 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCTGAACCGAGGGTTACAGCA-A-CGGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAA-ATCGAACCGGACCGAGGGTTAC-G-ATAGCAGGACCG
22541327 ACAGCACGTAAAGGGGGATCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGACTGGCTCAG
62 ACAGCACG-AAAGGGGGATCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGACTGGCTCAG
* *
22541392 CGCCCACACGCTCATTTCGTGGGTTGACTTAG
126 CACCCACACGCCCATTTCGTGGGTTGACTTAG
*
22541424 GCATACGGAGTTCATTCCCAGTCTAATATCGGACCGGACCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAA-ATCGAACCGGACCGAGGGTT
22541471 GTGGTCGCAG
Statistics
Matches: 166, Mismatches: 35, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 2 0.01
158 47 0.28
159 113 0.68
160 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAATCGAACCGGACCGAGGGTTACGATAGCAGGACCGACAG
CACGAAAGGGGGATCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGACTGGCTCAGCACCC
ACACGCCCATTTCGTGGGTTGACTTAG
Found at i:22541808 original size:26 final size:25
Alignment explanation
Indices: 22541778--22541826 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
22541768 GTTGACTTAG
*
22541778 GCATACGAAGTTCATCCCCAGTCTGA
1 GCATA-GAAGTTCATCCACAGTCTGA
* *
22541804 GCATAGGAGTTCATTCACAGTCT
1 GCATAGAAGTTCATCCACAGTCT
22541827 AAGATTGGAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 15 0.75
26 5 0.25
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (25 bp):
GCATAGAAGTTCATCCACAGTCTGA
Found at i:22542130 original size:159 final size:161
Alignment explanation
Indices: 22541898--22542307 Score: 399
Period size: 159 Copynumber: 2.6 Consensus size: 161
22541888 TAATCCCCGG
* * *
22541898 CTTACGCATTCTGCCTCTCCGATCGACTGAGCACCCGCATGC-C-CGTTTCGTGGGTTGGCTTTA
1 CTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCA-GCACTCATTTCGTGGGTTGGC-TTA
* * * *
22541961 -GTATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGAACCGAGGATTG-TGGCAGCAAGATCG
64 GGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGATTGCT-ACAGCAAGATCG
*
22542023 ACAACACGC-AGAGGGGGATCGGGCCGATCCTCGA
128 ACAACACGCAAGA-CGGGATCGGGCCGATCCTCGA
* * * * *
22542057 CTTACGCATTATGCCTCTCCGATCGGCTCAGCGCTCG-AGCACTCCTTTCGTGGGTCGGCTTAGG
1 CTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCAGCACTCATTTCGTGGGTTGGCTTAGG
* * * ** * * ** * * *
22542121 CATACGGAGTTCGTT-CGTAATCTAAG-ATTAGACTGGATTGAGGGTTGCTACAGCAGGATTGAC
66 CATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCGAACCGAGGATTGCTACAGCAAGATCGAC
* * * * *
22542184 AGCACGTAAGACGGGATCGGGCCTATCCTTGG
130 AACACGCAAGACGGGATCGGGCCGATCCTCGA
* * *
22542216 CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCA-CACTCATTTCATGGGTTGGCTTAGG
1 CTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCAGCACTCATTTCGTGGGTTGGCTTAGG
*
22542280 GATACGGAGTTCATTCCATGTCTAAGCA
66 CATACGGAGTTCATTCCATGTCTAAGCA
22542308 TACGGAGTTC
Statistics
Matches: 200, Mismatches: 41, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
157 2 0.01
158 8 0.04
159 182 0.91
160 8 0.04
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (161 bp):
CTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCAGCACTCATTTCGTGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGATTGCTACAGCAAGATCGACA
ACACGCAAGACGGGATCGGGCCGATCCTCGA
Found at i:22542311 original size:26 final size:26
Alignment explanation
Indices: 22542281--22542331 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
22542271 TGGCTTAGGG
22542281 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
22542307 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
22542332 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:22542524 original size:26 final size:26
Alignment explanation
Indices: 22542488--22542540 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22542478 GTTGACTTAG
22542488 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
22542514 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22542540 G
1 G
22542541 ATCTAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22544742 original size:26 final size:26
Alignment explanation
Indices: 22544712--22544764 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22544702 GTTGGCTTAG
22544712 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
22544738 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22544764 G
1 G
22544765 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22544939 original size:26 final size:26
Alignment explanation
Indices: 22544909--22544958 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
22544899 GTTGACTTAG
22544909 GCATACGGAATTCATCCCCAGTCTGA
1 GCATACGGAATTCATCCCCAGTCTGA
* *
22544935 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAATTCATCCCCAGTCT
22544959 AAGATCTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTGA
Found at i:22544960 original size:197 final size:196
Alignment explanation
Indices: 22544609--22544964 Score: 500
Period size: 197 Copynumber: 1.8 Consensus size: 196
22544599 TTGCTGCAAC
* * * * * *
22544609 AGGATCGACAACACGCAGGGGGGATCGGGTAGATCCACGGCTTACGCATTCTACCTCTCTGATCG
1 AGGATCGACAACACGAAGGGGGGACCGGGCAGATCCACGGATTACGCATTCTACCTCTCCGACCG
** * *
22544674 GTTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
66 ACTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAAG
*
22544739 CATACGGAGTTCTTTCCCAGTCTAAGATCGGATCAGATCGAGGGTTATGACAGTAGGACCAGCAG
131 CATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTATGACAGTAGGACCAGCAG
22544804 T
196 T
* * * * *
22544805 AGGATCGACAGCACGTAAGGGGGGACCGGGCCGATCCTCGGATTATGCATTCTGCCTCTCCGACC
1 AGGATCGACAACACG-AAGGGGGGACCGGGCAGATCCACGGATTACGCATTCTACCTCTCCGACC
* *
22544870 GACTGTACGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAA-TTCATCCCCA-GTCT
65 GACTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-GAAGTTCAT-CCCATGTCT
*
22544933 GAGCATACGGAGTTCATTCCCAGTCTAAGATC
128 AAGCATACGGAGTTCATTCCCAGTCTAAGATC
22544965 TAACTGGATC
Statistics
Matches: 138, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
196 14 0.10
197 118 0.86
198 6 0.04
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.24
Consensus pattern (196 bp):
AGGATCGACAACACGAAGGGGGGACCGGGCAGATCCACGGATTACGCATTCTACCTCTCCGACCG
ACTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTATGACAGTAGGACCAGCAG
T
Found at i:22545298 original size:159 final size:158
Alignment explanation
Indices: 22544935--22545298 Score: 362
Period size: 159 Copynumber: 2.3 Consensus size: 158
22544925 CCCAGTCTGA
* * * *
22544935 GCATACGGAGTTCATTCCCAGTCTAAGATCTA-ACTGGATCGAGGGTTGTGGTAGCAAGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACTGGATCGAGGGTTGTCGCAGCAAGACCGAC
* * * * * * * *
22544999 AGCATGTAGTGGGGATCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGACTGAGCGC
65 AGCACGCAGGGGGGATCGAGCTGATCCCCGACTTACGCATTATGACTCTTCGGCCGACTCAGCAC
* * *
22545064 CCGCACGCCCATTTCATGGGTTGGCTTAG
130 CCGCACGCCCATTTCATGAGATGACTTAG
* * ** * **
22545093 GCATAGGGAGTTTATT-CCATGTCTAAGCCCCAGTC-GGATCGAGGGTTGTCGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGATCGAGGGTTGTCGCAGCAAGACCGA
* *
22545156 CAGCACGCAGAGGGGGATTG-GGTCGATCCCC-AGCTTACGCATTATGACTC-TCTGGCCGACTC
64 CAGCACGCAG-GGGGGATCGAGCT-GATCCCCGA-CTTACGCATTATGACTCTTC-GGCCGACTC
* * *
22545218 AGCACCCGTACGCTCGTTTCATGAGATGACTTAG
125 AGCACCCGCACGCCCATTTCATGAGATGACTTAG
* *
22545252 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTT
22545299 ACGGTAGCAG
Statistics
Matches: 163, Mismatches: 34, Indels: 17
0.76 0.16 0.08
Matches are distributed among these distances:
157 3 0.02
158 61 0.37
159 96 0.59
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTCGCAGCAAGACCGACA
GCACGCAGGGGGGATCGAGCTGATCCCCGACTTACGCATTATGACTCTTCGGCCGACTCAGCACC
CGCACGCCCATTTCATGAGATGACTTAG
Found at i:22545590 original size:26 final size:26
Alignment explanation
Indices: 22545541--22545593 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22545531 GTTGGCTTAG
**
22545541 GCATACGGAGTTCAATCCTGGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
* *
22545567 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
22545593 G
1 G
22545594 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:22546040 original size:26 final size:26
Alignment explanation
Indices: 22546010--22546062 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22546000 GTTGACTTAG
*
22546010 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
*
22546036 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
22546062 G
1 G
22546063 ATCGACTGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:22546400 original size:26 final size:26
Alignment explanation
Indices: 22546350--22546402 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22546340 GTTGGCTTAG
*
22546350 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
22546376 GCATACGGAGTTCATTCTCA-ATCTAA
1 GCATACGGAGTTCATTC-CATATCTAA
22546402 G
1 G
22546403 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:22547603 original size:26 final size:26
Alignment explanation
Indices: 22547574--22547626 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22547564 GTTGGCTTAG
22547574 GCATACGGAGTCCATTCC-ATGTCTAA
1 GCATACGGAGTCCATTCCTA-GTCTAA
*
22547600 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTCCATTCCTAGTCTAA
22547626 G
1 G
22547627 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCTAGTCTAA
Found at i:22548207 original size:158 final size:158
Alignment explanation
Indices: 22547904--22548455 Score: 466
Period size: 158 Copynumber: 3.5 Consensus size: 158
22547894 TCTTCGACCG
* *
22547904 GCCTCTCCGGTAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCA
1 GCCTCTCCGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCA
* * * * *
22547969 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGTAGGATCGATAGCACGGAAGGGGGA
66 TTCCCAGTCTAAGACCAGACCGGACCAAGGGTTGCGATAGCAGGACCGACAGCACGGAAGGGGGA
* *
22548034 CCAGGCCAATCCCCGGCTTACGTATTCT
131 CCAGGCCAATCCCCGGCTTACGCATTAT
* * * * * *
22548062 GCCTCTCCAGTCGGCTGAGCGCCCGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
1 GCCTCTCCGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCA
* * * * * * * * *
22548127 TT-CCATGTCTAAGCCCCAG-TCGGATCAAGTGTTGTGGTAGCGGGACCGACAGCATGTAGAGGG
66 TTCCCA-GTCTAAG-ACCAGACCGGACCAAGGGTTGCGATAGCAGGACCGACAGCACGGA-AGGG
* * *
22548190 GGATC-GAGCCGAT-CCCGGCTTGCGCATTAT
128 GGACCAG-GCCAATCCCCGGCTTACGCATTAT
* * * * * *
22548220 GCCTCTCTGGTCGACTCAGCACCCGTACGCTCGTTTCATGGGTTGACTTAAGCATATGGAGTTCA
1 GCCTCTCCGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCA
* ** ** * ** ** * * *
22548285 TTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGTGGCAGCAGGATTGACAGCACGCATGAGGGA
66 TTCCCAGTCTAAGACCAGACCGGACCAAGGGTTGCGATAGCAGGACCGACAGCACGGAAGGGGGA
** * * ** *
22548350 CTGGGTCGATCCCCGGCTTGTGCATTCT
131 CCAGGCCAATCCCCGGCTTACGCATTAT
* * * * * * * * *
22548378 GCCTCTTCGGTCGGCTGAGTGCCTGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTAA
1 GCCTCTCCGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCA
22548443 TT-CCATGTCTAAG
66 TTCCCA-GTCTAAG
22548456 CATCTAGAGT
Statistics
Matches: 310, Mismatches: 75, Indels: 18
0.77 0.19 0.04
Matches are distributed among these distances:
157 19 0.06
158 272 0.88
159 19 0.06
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GCCTCTCCGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCA
TTCCCAGTCTAAGACCAGACCGGACCAAGGGTTGCGATAGCAGGACCGACAGCACGGAAGGGGGA
CCAGGCCAATCCCCGGCTTACGCATTAT
Found at i:22549477 original size:695 final size:696
Alignment explanation
Indices: 22547952--22549564 Score: 1712
Period size: 695 Copynumber: 2.3 Consensus size: 696
22547942 TGGGTTGACT
* * * *
22547952 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGTAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGACCGAGGGTTGTGGTAGCAAGATCG
* * * *
22548017 -ATAGCACGGAAGGGGGACCAGGCCAATCCCCGGCTTACGTATTCTGCCTCTCCA--G-T--CGG
65 CA-A-CACGGAAGGGGGA-CAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCATCGATGGCGA
* *
22548076 CTGAGCGCCCGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
127 CTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
* * * * *
22548141 CCCAGTCGGATC-AAGTGTTGTGGTAGCGGGACCGACAGCATGTAGAGGGGGATCGAGCCGATCC
192 CCCAGTCGGACCGAAG-GTTGTGGTAGCGGGACCGACAGCACGCAAAGGGGGACCGAGCCGATCC
* * * * * * *
22548205 CGGCTTGCGCATTATGCCTCTCTGGTCGACTCAGCACCCGTACGCTCGTTTCATGGGTTGACTTA
256 CGGCTTGCACATTATGCCTCTCCGGCCAACTCAGCACCCGAACGCTCATTTCATGAGTTGACTTA
* * * * * *
22548270 AGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGTGGCAGCAGGATTGAC
321 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGCAGCAAGATCGAC
* ** * * * * * **
22548335 AGCACGCATGAGGGACTGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAGTGC
386 AGCACGCATGAGGGACTGGGTCGAGCCCCCACTTGTGCATTCTACCTCTTCAGCCGACTAAACGC
* * * *
22548400 CTGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTAATTCCATGTCTAAGCATCTAGAG
451 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTAATTCCATGTCTAAGCATATAGAG
* * * * * * * *
22548465 TTCATTCCCAGCATACAGAGCCCCAGTCGGACCGAATGTGGCAGCAGGACCGGAAGTAGGATCGA
516 -TCAGTCCAAGCATACAGA--CCCAGACGCAACGAATGCGGCAGCAGGACCGAAAGCAGGATCGA
* * * * **
22548530 CAACATGTAGAGGGGGACCGAGCATATCCCCGACTTATGCATTATGCCTCTCCGGCCGACTGATT
578 CAACACGCAGAGGGGGACCGAGCAGATCCCCGACTTACGCATTATGCCTCTCCGGCCGACTGAGC
* * *
22548595 ACCCGTACACTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATCCCTAGTC
643 ACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTC
* * * *
22548649 TAAGCATACGAAGTTCATTCCCAGTTTAAGATCAACCAGACCGAGGGTT-TCG-A-CAATTGGAT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAACCGGACCGAGGGTTGTGGTAGCAA---GAT
* * * * * * *
22548711 CAACAGCAC-GCAGGGGGACCGGGCCGATCCCCGGGTTGTGCATTCTGCCTCT-CA--G--GCCG
63 C-GCAACACGGAAGGGGGA-CAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCATCGATGGCG
22548770 ACTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
126 ACTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
** * * * * *
22548835 CCCCAACCGGACCGAAGGTTGTGGTAACAGGACCGACAGCACGCAAAGGGGGACCGGGTCGCTCC
191 CCCCAGTCGGACCGAAGGTTGTGGTAGCGGGACCGACAGCACGCAAAGGGGGACCGAGCCGAT-C
* * *
22548900 CCGGCTTGCACATTATGCCTCTCCGGCCAACTCAGCCCCCGAATGCTCATTTCGTGAGTTGA-TT
255 CCGGCTTGCACATTATGCCTCTCCGGCCAACTCAGCACCCGAACGCTCATTTCATGAGTTGACTT
* * *
22548964 GACGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGTGGCAGCAAGATCG
320 -AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGCAGCAAGATCG
* *
22549029 ACAGCACGTA-G-GGGAGATCGGGTC-AGCCCCCACTTGTGCATTCTACCTCTTCAGCCGACTAA
384 ACAGCACGCATGAGGGA-CT-GGGTCGAGCCCCCACTTGTGCATTCTACCTCTTCAGCCGACTAA
*
22549091 ACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCATAT
447 ACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTAATTCCATGTCTAAGCATAT
* * * **
22549156 -G-G-CAGTCTAAG-AT-CAGA-CCGGAC-CAAGGGTTGCGGCAGCAGGACC-AATAGCAGGATC
512 AGAGTCAGTCCAAGCATACAGACCCAGACGCAACGAATGCGGCAGCAGGACCGAA-AGCAGGATC
** * * * * * * * * *
22549213 GGTAGCACGCAGGGGGGGACCGAGTC-GATCCCTGGCTTGCGCATTCTGCCTCTCTGGTCGGCTG
576 GACAACACGCAGAGGGGGACCGAG-CAGATCCCCGACTTACGCATTATGCCTCTCCGGCCGACTG
* *
22549277 AGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATGCGAAGTTCATCCCCAGTC
640 AGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTC
* *
22549334 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCTAATCGGATCGAGGGTTGTGGTAGCAAGATCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AACCGGACCGAGGGTTGTGGTAGCAAGATC-
* ** *
22549399 GCAACACGGAAGGGGGACTGCGTTGATCCCCGGCTTGCGCATTCTGCCTCT-C--CGAT--CGAT
64 GCAACACGGAAGGGGGACAG-GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCATCGATGGCGAC
* * * *
22549459 TGGGCGCCTGCACGCCCGTTTCATTGGTTGGCTTAGGCATCA-GGAGTTCATTCCATGTCTAAGC
128 TGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCAT-AGGGAGTTCATTCCATGTCTAAGC
* * * *
22549523 CCTAGTCAGACTGAGGGTTGTGGTAGCGGGACCGACAGCACG
192 CCCAGTCGGACCGAAGGTTGTGGTAGCGGGACCGACAGCACG
22549565 TAGAAGTGGA
Statistics
Matches: 761, Mismatches: 131, Indels: 58
0.80 0.14 0.06
Matches are distributed among these distances:
684 1 0.00
685 152 0.20
686 29 0.04
687 133 0.17
688 2 0.00
689 7 0.01
690 2 0.00
691 6 0.01
693 2 0.00
694 9 0.01
695 239 0.31
696 146 0.19
697 32 0.04
698 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (696 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAACCGGACCGAGGGTTGTGGTAGCAAGATCGC
AACACGGAAGGGGGACAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCATCGATGGCGACTGA
GCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
GTCGGACCGAAGGTTGTGGTAGCGGGACCGACAGCACGCAAAGGGGGACCGAGCCGATCCCGGCT
TGCACATTATGCCTCTCCGGCCAACTCAGCACCCGAACGCTCATTTCATGAGTTGACTTAAGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGCAGCAAGATCGACAGCAC
GCATGAGGGACTGGGTCGAGCCCCCACTTGTGCATTCTACCTCTTCAGCCGACTAAACGCCCGCA
CGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTAATTCCATGTCTAAGCATATAGAGTCAGT
CCAAGCATACAGACCCAGACGCAACGAATGCGGCAGCAGGACCGAAAGCAGGATCGACAACACGC
AGAGGGGGACCGAGCAGATCCCCGACTTACGCATTATGCCTCTCCGGCCGACTGAGCACCCGCAC
ACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTC
Found at i:22549704 original size:26 final size:26
Alignment explanation
Indices: 22549655--22549706 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22549645 TTGGCTTAGC
*
22549655 CATAAGGAGTTCATTCCATGTCTAAG
1 CATAAGGAGTTCATTCCATATCTAAG
*
22549681 CATACGGAGTTCATTCCCA-ATCTAAG
1 CATAAGGAGTTCATT-CCATATCTAAG
22549707 AGTTTGAGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (26 bp):
CATAAGGAGTTCATTCCATATCTAAG
Found at i:22550721 original size:159 final size:158
Alignment explanation
Indices: 22550326--22550851 Score: 419
Period size: 159 Copynumber: 3.3 Consensus size: 158
22550316 GAGCGTCTGC
* * * * * * *
22550326 ACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCGAATCAGATC
1 ACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGATCGGACC
* * **
22550391 GAGGGTTACGGTAGCAGGATCGACAGCATGCGAGGGGGATCGGGTCGATCCCCGGCTTGTGCATT
66 GAGGGTTGCGGTAGCAGGATCGACAGCATGCGAGGGGGATCGGGCCGATCCCCGGCTTGCACATT
* * * * **
22550456 CTGCCTCTCCAGCTGGCTGAGTGCTCGC
131 ATGCCTCTCCAGCTGGCTCAGCGCCCAA
* * * ** *
22550484 ACGC-CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CTATGTCTAAGCCCCA-G-CCG
1 ACGCTCC-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG--ATAGGATCG
* * * * ** *
22550545 AACTGAGGGTTGTGGTAGCGGGA-CTGGTAGCATGCAGAGGGGGATCGGGCCGATCCCTGGCTTG
62 GACCGAGGGTTGCGGTAGCAGGATC-GACAGCATGC-GAGGGGGATCGGGCCGATCCCCGGCTTG
22550609 CACATTATGCCTCTCCAG-TCGGCTCAGCGCCCAA
125 CACATTATGCCTCTCCAGCT-GGCTCAGCGCCCAA
* * *
22550643 ACGCTCCTTTCATGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGATAGGATCGGACC
1 ACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGATCGGACC
* * * * * * *
22550708 AAGAGTTGCGGTAGCAAGATCAACAGCA--CCAGACGGGATCGGGCCGATCCCCGGTTTGCACAT
66 GAGGGTTGCGGTAGCAGGATCGACAGCATGCGAG-GGGGATCGGGCCGATCCCCGGCTTGCACAT
* * * *
22550771 TCTGCCTCTCC-GACTGGCTGAGCG-TCAGC
130 TATGCCTCTCCAG-CTGGCTCAGCGCCCA-A
* * * **
22550800 ATGCTCGTTTCGTGGGTT-AGTTTAGGCATACAAAGTTCATT-CCATGTCTAAG
1 ACGCTCCTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
22550852 CATACGGAGT
Statistics
Matches: 287, Mismatches: 63, Indels: 37
0.74 0.16 0.10
Matches are distributed among these distances:
156 9 0.03
157 91 0.32
158 70 0.24
159 112 0.39
160 5 0.02
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (158 bp):
ACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGATCGGACC
GAGGGTTGCGGTAGCAGGATCGACAGCATGCGAGGGGGATCGGGCCGATCCCCGGCTTGCACATT
ATGCCTCTCCAGCTGGCTCAGCGCCCAA
Found at i:22550854 original size:26 final size:26
Alignment explanation
Indices: 22550825--22550877 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22550815 GTTAGTTTAG
22550825 GCATACAAAGTTCATTC-CATGTCTAA
1 GCATACAAAGTTCATTCTCA-GTCTAA
**
22550851 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAAAGTTCATTCTCAGTCTAA
22550877 G
1 G
22550878 ATCGGATTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCTCAGTCTAA
Found at i:22551057 original size:26 final size:26
Alignment explanation
Indices: 22551021--22551073 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22551011 GTTGAATTAG
22551021 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
22551047 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22551073 G
1 G
22551074 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22551562 original size:26 final size:26
Alignment explanation
Indices: 22551510--22551562 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22551500 GTTGGCTTAG
*
22551510 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
22551536 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
22551562 G
1 G
22551563 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:22551733 original size:685 final size:692
Alignment explanation
Indices: 22550351--22551720 Score: 1670
Period size: 683 Copynumber: 2.0 Consensus size: 692
22550341 GTTAACTTAG
22550351 GCATACGGAGTTCATTCCCAGTGTAAGATCGAATCAGATCGAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGAATCAGATCGAGGGTTACGGTAGCAGGA-CGACA
* * * ** * * *
22550416 GCATGCGAGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCAGCTGGCTGAGTGCT
65 G-AT--GAGGGGGACCGGGCCAATCCCCGGCTTACGCATTCTACCTCTCCAGCCGGCTGAGCGCT
* *
22550481 CGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAGCCGA
127 CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGA
* * ** * * * * * * *
22550546 ACTGAGGGTTGTGGTAGCGGGACTGGTAGCATGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCA
192 ACCGAGGGTTGTGGCAGCGGGACTGACAGCATACAAAGGGGGACCCGACCAATCCCCGGCTTGCA
* * *
22550611 CATTATGCCTCTCCAGTCGGCTCAGCGCCCAAACGCTCCTTTCATGGGTTGACTTAAGCATACAG
257 CATTATGCCTCTCCAGTCAGCTCAACGCCCAAACGCTCCTTTCATAGGTTGACTTAAGCATACAG
* * * * *
22550676 AGTTCATTCCCAGTCTAAGATAGGATCGGACCAAGAGTTGCGGTAGCAAGATCAACAGCACCAGA
322 AGTTCATTCCCAGTCAAAGATAGGATCGGACCAAGAGTTACGATAGCAAGATCAACAACACAAGA
** * * *
22550741 CGGGATCGGGCCGATCCCCGGTTTGCACATTCTGCCTCTCCGACTGGCTGAGCGTCAGCATGCTC
387 CGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGACTGACTGAGCGCCAGCACGCTC
* * * *
22550806 GTTTCGTGGGTTAGTTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCTCA
452 GTTTCATGAGTTAGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
* ** * * *
22550871 GTCTAAGATCGGATTAGATTGAAGGTTGAGGCAATAGGACCAGCAGCAGGATAGGCAGCACGCAG
517 GTCTAAGATCGGACTAGACCGAAGGTTGAGGCAACAGGACCAACAGCAGGATAGACAGCACGCAG
* * * * * * *
22550936 GGGGGACCGGGTCGATCCTCGACTTGTGCATTCTACCTCTCCGGTCGGCTGAGTGCTCGCACACT
582 GGGGGACCGAGCCGATCCCCGACTTGTGCATTCTACCTCTCCAGTCGGCTGAGCGCCCACACACT
*
22551001 CGTTTCGTGGGTTGAATTAGGCATACGGAGTTCATCCCCAGTCTAA
647 CGTTTCGTGGGTTGAATTAGGCATACAGAGTTCATCCCCAGTCTAA
*
22551047 GCATACGGAGTTCATTCCCAGTGTAAGATCGAA-CTGGATCGAGGGTTAC-G-A-CA-G-C-AC-
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGAATC-AGATCGAGGGTTACGGTAGCAGGACGACA
*
22551104 G-T-AGGGGGACCGGGCCAATCCCCGGCTTACGCATTCTACCTCTCCGGCCGGCTGAGCGC-CAG
65 GATGAGGGGGACCGGGCCAATCCCCGGCTTACGCATTCTACCTCTCCAGCCGGCTGAGCGCTC-G
* * *
22551166 CACGCCCGTTTCATTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
129 CACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAAC
* * * * **
22551231 CGAGGGTTGTGGCAGCGGGATTGACAGCATATAAAGGGTGACCCGATCAATCCCCGGCTTGCGTA
194 CGAGGGTTGTGGCAGCGGGACTGACAGCATACAAAGGGGGACCCGACCAATCCCCGGCTTGCACA
* ** * * *
22551296 TTATGCCTCTCC-GGCTAGCTCAACGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGGA
259 TTATGCCTCTCCAGTC-AGCTCAACGCCCAAACGCTCCTTTCATAGGTTGACTTAAGCATACAGA
* * * *
22551360 GTTCATTCCCAGTCAAAGATCA-GATCGGACCGAGGGTTACGATAGCAAGATCGACAATATACAA
323 GTTCATTCCCAGTCAAAGAT-AGGATCGGACCAAGAGTTACGATAGCAAGATCAAC-A-ACACAA
** * * *
22551424 GGGGGGATCGGGCCGATCGCCGACTTGCGCATTCTGCCTCTCCGA-TCGACTGAGCGCCCGCACG
385 GACGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGACT-GACTGAGCGCCAGCACG
* ** *
22551488 CTCGTTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGCATACGGAGTTCATTC
449 CTCGTTTCATGAGTTAGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
* * * * * * * * *
22551553 CCAGTCTAAGATTGGACTGGACCGAGGGTTGCGGTAGCAGGAGCAACAGCAGGATCGATAGCACG
514 CCAGTCTAAGATCGGACTAGACCGAAGGTTGAGGCAACAGGACCAACAGCAGGATAGACAGCACG
* * *
22551618 TAGGGGGGACCGAGCCGATCCCCGACTTGTGCATTCTGCCTCTCCAGTCGGTTGAGCGCCCACAC
579 CAGGGGGGACCGAGCCGATCCCCGACTTGTGCATTCTACCTCTCCAGTCGGCTGAGCGCCCACAC
* **
22551683 GCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCAT
644 ACTCGTTTCGTGGGTTGAATTAGGCATACAGAGTTCAT
22551721 TCCTTGTCTA
Statistics
Matches: 570, Mismatches: 97, Indels: 25
0.82 0.14 0.04
Matches are distributed among these distances:
682 3 0.01
683 256 0.45
684 3 0.01
685 251 0.44
686 1 0.00
688 1 0.00
689 2 0.00
690 1 0.00
692 1 0.00
693 2 0.00
694 1 0.00
695 2 0.00
696 46 0.08
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (692 bp):
GCATACGGAGTTCATTCCCAGTGTAAGATCGAATCAGATCGAGGGTTACGGTAGCAGGACGACAG
ATGAGGGGGACCGGGCCAATCCCCGGCTTACGCATTCTACCTCTCCAGCCGGCTGAGCGCTCGCA
CGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCG
AGGGTTGTGGCAGCGGGACTGACAGCATACAAAGGGGGACCCGACCAATCCCCGGCTTGCACATT
ATGCCTCTCCAGTCAGCTCAACGCCCAAACGCTCCTTTCATAGGTTGACTTAAGCATACAGAGTT
CATTCCCAGTCAAAGATAGGATCGGACCAAGAGTTACGATAGCAAGATCAACAACACAAGACGGG
ATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGACTGACTGAGCGCCAGCACGCTCGTTT
CATGAGTTAGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGATCGGACTAGACCGAAGGTTGAGGCAACAGGACCAACAGCAGGATAGACAGCACGCAGGGGG
GACCGAGCCGATCCCCGACTTGTGCATTCTACCTCTCCAGTCGGCTGAGCGCCCACACACTCGTT
TCGTGGGTTGAATTAGGCATACAGAGTTCATCCCCAGTCTAA
Found at i:22551817 original size:685 final size:680
Alignment explanation
Indices: 22550407--22551823 Score: 1567
Period size: 685 Copynumber: 2.1 Consensus size: 680
22550397 TACGGTAGCA
* ** * *
22550407 GGATCGACAGCATGC-GAGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCAGCTG
1 GGATCGACAGCACGCAGA-GGGGATCGGGTCGATCCCCGGCTTACGCATTCTACCTCTCCAGCCG
* * *
22550471 GCTGAGTGCTCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAG
65 GCTGAGCGCTCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
* * ** * * * * * *
22550536 CCCCAGCCGAACTGAGGGTTGTGGTAGCGGGACTGGTAGCATGCAGAGGGGGATCGGGCCGATCC
130 CCCCAGCCGAACCGAGGGTTGTGGCAGCGGGACTGACAGCATACAAAGGGGGACCCGACCAATCC
* * * *
22550601 CTGGCTTGCACATTATGCCTCTCCAGTCGGCTCAGCGCCCAAACGCTCCTTTCATGGGTTGACTT
195 CCGGCTTGCACATTATGCCTCTCCAGTCAGCTCAACGCCCAAACGCTCCTTTCATAGGTTGACTT
* * *
22550666 AAGCATACAGAGTTCATTCCCAGTCTAAGATAGGATCGGACCAAGAGTTGCGGTAGCAAGATCAA
260 AAGCATACAGAGTTCATTCCCAGTCAAAGATAGGATCGGACCAAGAGTTACGATAGCAAGATCAA
* * ** * *
22550731 CAGCACCAGACGGGATCGGGCCGATCCCCGGTTTGCACATTCTGCCTCTCCGACTGGCTGAGCGT
325 CAACACAAGACGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGACTGACTGAGCGC
* * * *
22550796 CAGCATGCTCGTTTCGTGGGTTAGTTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACGGAG
390 CAGCACGCTCGTTTCATGAGTTAGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACGGAG
* * ** * * *
22550861 TTCATTCTCAGTCTAAGATCGGATTAGATTGAAGGTTGAGGCAATAGGACCAGCAGCAGGATAGG
455 TTCATTCCCAGTCTAAGATCGGACTAGACCGAAGGTTGAGGCAACAGGACCAACAGCAGGATAGA
* * * * *
22550926 CAGCACGCAGGGGGGACCGGGTCGATCCTCGACTTGTGCATTCTACCTCTCCGGTCGGCTGAGTG
520 CAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGTGCATTCTACCTCTCCAGTCGGCTGAGCG
* * * **
22550991 CTCGCACACTCGTTTCGTGGGTTGAATTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
585 CCCACACACTCGTTTCGTGGGTTGAATTAGGCATACAGAGTTCATCCCCAGTCTAAGC--ACCCA
* ** * *
22551056 GTTCATTCCCAGTGTAAGATCGAACTGGATCGAG
648 GATCAGACCCAGTGTAAGAGCAAACTGGA-CGAG
* * * * * *
22551090 GGTTACGACAGCACGTAG-GGGGACCGGGCCAATCCCCGGCTTACGCATTCTACCTCTCCGGCCG
1 GGAT-CGACAGCACGCAGAGGGGATCGGGTCGATCCCCGGCTTACGCATTCTACCTCTCCAGCCG
* *
22551154 GCTGAGCGC-CAGCACGCCCGTTTCATTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
65 GCTGAGCGCTC-GCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * * *
22551218 GCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATTGACAGCATATAAAGGGTGACCCGATCAATC
129 GCCCCAGCCGAACCGAGGGTTGTGGCAGCGGGACTGACAGCATACAAAGGGGGACCCGACCAATC
** * ** *
22551283 CCCGGCTTGCGTATTATGCCTCTCC-GGCTAGCTCAACGCCCGCACGCTCGTTTCATAGGTTGAC
194 CCCGGCTTGCACATTATGCCTCTCCAGTC-AGCTCAACGCCCAAACGCTCCTTTCATAGGTTGAC
* * * *
22551347 TTAGGCATACGGAGTTCATTCCCAGTCAAAGATCA-GATCGGACCGAGGGTTACGATAGCAAGAT
258 TTAAGCATACAGAGTTCATTCCCAGTCAAAGAT-AGGATCGGACCAAGAGTTACGATAGCAAGAT
* * ** * *
22551411 CGACAATATACAAGGGGGGATCGGGCCGATCGCCGACTTGCGCATTCTGCCTCTCCGA-TCGACT
322 CAAC-A-ACACAAGACGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGACT-GACT
* * ** *
22551475 GAGCGCCCGCACGCTCGTTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGCAT
384 GAGCGCCAGCACGCTCGTTTCATGAGTTAGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCAT
* * * * * * *
22551540 ACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGGTAGCAGGAGCAACAGCAG
449 ACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAAGGTTGAGGCAACAGGACCAACAGCAG
* * * * *
22551605 GATCGATAGCACGTAGGGGGGACCGAGCCGATCCCCGACTTGTGCATTCTGCCTCTCCAGTCGGT
514 GATAGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGTGCATTCTACCTCTCCAGTCGGC
* ** * **
22551670 TGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTTGTCTAAGC-
579 TGAGCGCCCACACACTCGTTTCGTGGGTTGAATTAGGCATACAGAGTTCATCCCCAGTCTAAGCA
* * * *
22551734 CCCA-ATCGGACCGATGGTTGT-CGCAGCAAGACTGG-CAGTG
644 CCCAGATCAGACCCA--G-TGTAAG-AGCAA-ACTGGAC-GAG
* *
22551774 GGATCGACAGCACGCAGAGGAGGATCGGGTTGATCCTCGGCTTACGCATT
1 GGATCGACAGCACGCAGAGG-GGATCGGGTCGATCCCCGGCTTACGCATT
22551824 ATGCCTCTTC
Statistics
Matches: 598, Mismatches: 120, Indels: 30
0.80 0.16 0.04
Matches are distributed among these distances:
681 5 0.01
682 5 0.01
683 272 0.45
684 25 0.04
685 291 0.49
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (680 bp):
GGATCGACAGCACGCAGAGGGGATCGGGTCGATCCCCGGCTTACGCATTCTACCTCTCCAGCCGG
CTGAGCGCTCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
CCCAGCCGAACCGAGGGTTGTGGCAGCGGGACTGACAGCATACAAAGGGGGACCCGACCAATCCC
CGGCTTGCACATTATGCCTCTCCAGTCAGCTCAACGCCCAAACGCTCCTTTCATAGGTTGACTTA
AGCATACAGAGTTCATTCCCAGTCAAAGATAGGATCGGACCAAGAGTTACGATAGCAAGATCAAC
AACACAAGACGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGACTGACTGAGCGCC
AGCACGCTCGTTTCATGAGTTAGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCGGACTAGACCGAAGGTTGAGGCAACAGGACCAACAGCAGGATAGAC
AGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGTGCATTCTACCTCTCCAGTCGGCTGAGCGC
CCACACACTCGTTTCGTGGGTTGAATTAGGCATACAGAGTTCATCCCCAGTCTAAGCACCCAGAT
CAGACCCAGTGTAAGAGCAAACTGGACGAG
Found at i:22552380 original size:26 final size:26
Alignment explanation
Indices: 22552346--22552395 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
22552336 TGGCTTAGGC
*
22552346 ATACGGAGTTCATTCC-ATGTCTAAAT
1 ATACAGAGTTCATTCCTA-GTCTAAAT
*
22552372 ATACAGAGTTGATTCCTAGTCTAA
1 ATACAGAGTTCATTCCTAGTCTAA
22552396 GATTTTGAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (26 bp):
ATACAGAGTTCATTCCTAGTCTAAAT
Found at i:22553028 original size:26 final size:26
Alignment explanation
Indices: 22552998--22553050 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22552988 GTTGACTTAG
22552998 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
22553024 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22553050 G
1 G
22553051 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22553380 original size:159 final size:156
Alignment explanation
Indices: 22553024--22553526 Score: 496
Period size: 159 Copynumber: 3.2 Consensus size: 156
22553014 CCCAGTCTAA
* *
22553024 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGACTGGATCGAGGGTTGTGGCAGCAGGATCGGT
1 GCATATGGAGTTCATT-CCATGTCTAAGAT-AGACTGGATCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * *
22553088 AGCACACAGGGGGGACCGGGCCGAT-CCCAAGCTTACGCATTCTGCCTCTCCAATCGGTTGAGCA
64 AGCACACAGGGGGGACCGGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTTCGA-CGGCTGAGCG
* *
22553152 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
127 CCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
22553182 GCATAGGGAGTTCATTCCATGTCTAA-ACCCCAG-CTGGATCAAGGGTTGCGGCAGCGGGATCGG
1 GCATATGGAGTTCATTCCATGTCTAAGA---TAGACTGGATCGAGGGTTGCGGCAGCAGGATCGG
* * * *
22553245 CAGCACACAGAGGGGGATCGGGCCGATCCCCGACTTGCTCATTATGCCTCTTCGACGGGCTCAGC
63 CAGCACACAG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGAC-GGCTGAGC
* * *
22553310 GCCCGTACGCTCGTTTCGCGGGTTGACTTAT
126 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* *** * *
22553341 ACATATGGAGTTCATTCCCA-GTCTAAGATAGGA-TCGGATCGAGGGTTGCCATAGCAAGATCGA
1 GCATATGGAGTTCATT-CCATGTCTAAGATA-GACT-GGATCGAGGGTTGCGGCAGCAGGATCGG
* * ** * * *
22553404 CAGCACGCAGGGGGGGACCAGATCGATCCCCGACTTGAGCATTCTGCCTCTCTGGTCGGCTGAGC
63 CAGCACACA-GGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCT-TCGACGGCTGAGC
** *
22553469 GCCTATACGCTCATTTCGTGGGTTGGCTTAG
126 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
*
22553500 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
22553527 CATACGGAGT
Statistics
Matches: 280, Mismatches: 50, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
157 5 0.02
158 63 0.22
159 200 0.71
160 12 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATATGGAGTTCATTCCATGTCTAAGATAGACTGGATCGAGGGTTGCGGCAGCAGGATCGGCAG
CACACAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGACGGCTGAGCGCCCG
TACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:22553550 original size:26 final size:26
Alignment explanation
Indices: 22553500--22553552 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22553490 GTTGGCTTAG
*
22553500 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
22553526 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
22553552 G
1 G
22553553 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:22554254 original size:26 final size:26
Alignment explanation
Indices: 22554224--22554276 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22554214 GTTGACTTAG
22554224 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
22554250 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22554276 G
1 G
22554277 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22554606 original size:159 final size:156
Alignment explanation
Indices: 22554250--22554752 Score: 496
Period size: 159 Copynumber: 3.2 Consensus size: 156
22554240 CCCAGTCTAA
* *
22554250 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGACTGGATCGAGGGTTGTGGCAGCAGGATCGGT
1 GCATATGGAGTTCATT-CCATGTCTAAGAT-AGACTGGATCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * *
22554314 AGCACACAGGGGGGACCGGGCCGAT-CCCAAGCTTACGCATTCTGCCTCTCCAATCGGTTGAGCA
64 AGCACACAGGGGGGACCGGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTTCGA-CGGCTGAGCG
* *
22554378 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
127 CCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
22554408 GCATAGGGAGTTCATTCCATGTCTAA-ACCCCAG-CTGGATCAAGGGTTGCGGCAGCGGGATCGG
1 GCATATGGAGTTCATTCCATGTCTAAGA---TAGACTGGATCGAGGGTTGCGGCAGCAGGATCGG
* * * *
22554471 CAGCACACAGAGGGGGATCGGGCCGATCCCCGACTTGCTCATTATGCCTCTTCGACGGGCTCAGC
63 CAGCACACAG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGAC-GGCTGAGC
* * *
22554536 GCCCGTACGCTCGTTTCGCGGGTTGACTTAT
126 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* *** * *
22554567 ACATATGGAGTTCATTCCCA-GTCTAAGATAGGA-TCGGATCGAGGGTTGCCATAGCAAGATCGA
1 GCATATGGAGTTCATT-CCATGTCTAAGATA-GACT-GGATCGAGGGTTGCGGCAGCAGGATCGG
* * ** * * *
22554630 CAGCACGCAGGGGGGGACCAGATCGATCCCCGACTTGAGCATTCTGCCTCTCTGGTCGGCTGAGC
63 CAGCACACA-GGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCT-TCGACGGCTGAGC
** *
22554695 GCCTATACGCTCATTTCGTGGGTTGGCTTAG
126 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
*
22554726 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
22554753 CATACGGAGT
Statistics
Matches: 280, Mismatches: 50, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
157 5 0.02
158 63 0.22
159 200 0.71
160 12 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATATGGAGTTCATTCCATGTCTAAGATAGACTGGATCGAGGGTTGCGGCAGCAGGATCGGCAG
CACACAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGACGGCTGAGCGCCCG
TACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:22554776 original size:26 final size:26
Alignment explanation
Indices: 22554726--22554778 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22554716 GTTGGCTTAG
*
22554726 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
22554752 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
22554778 G
1 G
22554779 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:22555789 original size:157 final size:157
Alignment explanation
Indices: 22555375--22555825 Score: 428
Period size: 159 Copynumber: 2.8 Consensus size: 157
22555365 TACTACCCGT
* * * * * * *
22555375 TCGATCCCTAGCTTGCGCATCCTGCCTCTCTAGTCGGCTGAGCGCCGGCAAGCCCGTTTCGTGGG
1 TCGATCCCCAGCTTGCGCATTCTGCCTCTCTAGCCGGTTGAGC-CCAG-ACGCTCGTTTCGTGGG
* * * ** *
22555440 TTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGTCGGAATGAGGGTTGTGGTAGCG
64 TTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCAGAATGAGGGTTGTGACAGCA
*
22555505 GGACCGATAGCACGCAGAGGGGGACCGAG
129 GGACCGACAGCACGCAGAGGGGGACCGAG
* * * * **
22555534 TCGATCCCCGGCTTGCGCATTATGCCTCTCCAGCTGGCTCAACGCCCAGACGCTCGTTTCGTGGG
1 TCGATCCCCAGCTTGCGCATTCTGCCTCTCTAGCCGG-TTGA-GCCCAGACGCTCGTTTCGTGGG
* * * * ** *
22555599 TTGACATAGGCATACGGAGTTCATTAACA-GTCTAAG-ATCGGATCAG-ATCGAGGGTTGTGACA
64 TTGGCTTAGGCATAAGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGAAT-GAGGGTTGTGACA
* *
22555661 GCAGGATCGACAGCACGCAG-GGGGGACCGGG
126 GCAGGACCGACAGCACGCAGAGGGGGACCGAG
* * *
22555692 TCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCACC-GTACGCTTGTTTCATGGG
1 TCGATCCCCAGCTTGCGCATTCTGCCTCTCTAGCCGGTTGAGC-CCAG-ACGCTCGTTTCGTGGG
* * * * *
22555756 TTGGCTTAGGCATAAAGAGTTCATTCCATGTCTAAGCGCCAG-CCGAACCGAGGGTTGTGGCAGC
64 TTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCAGAA-TGAGGGTTGTGACAGC
*
22555820 TGGACC
128 AGGACC
22555826 AGTAACGGGA
Statistics
Matches: 231, Mismatches: 50, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
156 7 0.03
157 65 0.28
158 48 0.21
159 103 0.45
160 6 0.03
161 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
TCGATCCCCAGCTTGCGCATTCTGCCTCTCTAGCCGGTTGAGCCCAGACGCTCGTTTCGTGGGTT
GGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCAGAATGAGGGTTGTGACAGCAGG
ACCGACAGCACGCAGAGGGGGACCGAG
Found at i:22555977 original size:26 final size:26
Alignment explanation
Indices: 22555948--22555998 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
22555938 GTTGACTTAG
22555948 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
22555974 GCATACTGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
22555999 CGATCAGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22556485 original size:26 final size:26
Alignment explanation
Indices: 22556449--22556501 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22556439 GTTGGCTTAG
22556449 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
22556475 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22556501 G
1 G
22556502 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22558114 original size:903 final size:900
Alignment explanation
Indices: 22556299--22558277 Score: 2948
Period size: 903 Copynumber: 2.2 Consensus size: 900
22556289 TTGCATACAA
* * *
22556299 AGTTCATTCCTAGTCTAAGATCAGACCGGAATGAGGGTTACGGCAGCAGGATCGATAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCAGACC-GAATGAGGGTTACGGCAGTAGGATCGATAGCACGCA-
* * * * *
22556364 GGGGGACCGAGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGACAGGCTGAGTACCCGCACGCT
64 GGGGGACCG-GCCGATCCCCGGCTTGCGCATTCTGCCTTTCCGAC-GGCTGAGTGCCCGCACGCT
** * *
22556429 CGTTTAATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
127 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGCATACGGAGTTCATTCCC
* *
22556494 AGTCTAAGAGTTTGAGCCACGGTGCACATGCTGGGCTCAAGCATGTGCTGGTGCCACATTTTTTT
192 AGTCTAAGAGTTTGAGCCACGGTGCACATGCTGAGCTCAAGCATGTGCTGGTGCCACATTTCTTT
* *
22556559 TGCCCGGGGCACCTTCGTCGGAGCATCACTGGAGAGCCTAACCGGCGGCATTGAGGGTTTCGACG
257 TACCCGGGGCACCATCGTCGGAGCATCACTGGAGAGCCTAACCGGCGGCATTGAGGGTTTCGACG
* *
22556624 ATTGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTG
322 ATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
22556689 GCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTATAG
387 GCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAG
* *
22556754 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATT
452 GTTTGCTGCCACTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATC
* * *
22556819 TTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTGTGCTTGCCAACAAAAATACAAGGATCACCTC
517 TTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACCTC
* **
22556884 TACCAAATTTGGGGACAAAACTCTTTCTAAAAAGTTTAAAAAATCCCAAATCGCAAAAAGTTTTG
582 TACCAAATTTGGGGACAAAACTCTTTCTAAAAAGTTTAAAAAATCCCAAACCGCAAAAAGTTTCA
* * *
22556949 AAAATCATGAAAAATAGAAAATGGGTCGTCTTGCCACAAAACTTCACATGAAGGCTTACGGGACC
647 AAAATCATGAAAAATAAAAAACGGGTCATCTTGCCACAAAACTTCACATGAAGGCTTACGGGACC
* * *
22557014 ATTGTATGAATTTACAAGCCATAAAAATGGAATTGCCACGGTAGAAATATGTAGATGTGCTTGAA
712 ATTGTATGAATTTACAAGCCATAAAAATGGAATTGCCACGGCAGAAATATGAAGACGTGCTTGAA
*
22557079 CCCACCTACCACCCATTCGATCCTCGGCTTGCGCATCCTACCTCTTTGCTCTGCTGAGCGCCTGC
777 CCCACCTACCACCCATTCGATCCTCGGCTTGCGCATCCTACCTCTTTGCTCTGCTGAGCGCCCGC
*
22557144 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATAG
842 ACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATAG
* * ** * **
22557203 AATTCATTCCCAGTCTAAGATCGGACCAGCCTGAGGGTTACGGCAGTAGGATTGGCAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACC-GAATGAGGGTTACGGCAGTAGGATCGATAGCACGCAG
*
22557268 GGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTTTCCGATCGGCTGAGTGCCCGTACGCTC
65 GGGGACC-GGCCGATCCCCGGCTTGCGCATTCTGCCTTTCCGA-CGGCTGAGTGCCCGCACGCTC
**
22557333 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTATAAGCATGTGGAGTTCATTCCCA
128 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGCATACGGAGTTCATTCCCA
* * ** * **
22557397 GTCTAAGATTTTGAGCCATGGTGCACATTTTGAGCTCGAGCATGTGCTGGTGCTGCATTTCTTTT
193 GTCTAAGAGTTTGAGCCACGGTGCACATGCTGAGCTCAAGCATGTGCTGGTGCCACATTTCTTTT
** **
22557462 ACCCGGGGCACCATCGTCGGAGCATCGTTGGAGAGCCTAACCGGCGGCATTG-GGGTTTCCGGGG
258 ACCCGGGGCACCATCGTCGGAGCATCACTGGAGAGCCTAACCGGCGGCATTGAGGGTTT-CGACG
22557526 ATTGGGGTGGCCGGGGGGTGTG-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
322 ATTGGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
22557590 GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATA
386 GGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATA
22557655 GGTTTGCT-CCACTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAAT
451 GGTTTGCTGCCACTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAAT
22557719 CTTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACCT
516 CTTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACCT
* * *
22557784 CTACCAAATTTGGGGACAAAACTCTTTTTAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTT
581 CTACCAAATTTGGGGACAAAACTCTTTCT--AAAAAGTTTAAAAAATCCCAAACCGCAAAAAGTT
*
22557849 TCAAAAATCATGAAAAATAAAAAACGGGTCATCTTGCCACGAAACTTCACATGAAGGCTTA-GGA
644 TCAAAAATCATGAAAAATAAAAAACGGGTCATCTTGCCACAAAACTTCACATGAAGGCTTACGG-
* * * *
22557913 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAATACGTGCT
708 GACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGCCACGGCAGAAATATGAAGACGTGCT
* * *
22557978 TGAACCCACCTACCACCCGTTTGATCCTCGGCTTGCGCATCCTACCTCTTTGGTC-GTCTGAGCG
773 TGAACCCACCTACCACCCATTCGATCCTCGGCTTGCGCATCCTACCTCTTTGCTCTG-CTGAGCG
*
22558042 CCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATAT-G
837 CCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATAG
* * * * * *
22558105 TAGTTCATTCCCAATGTAAGATCAGATCGGATCGAGGGTTACGGTAGTAGGATCGATAGCATGCA
1 -AGTTCATTCCCAGTCTAAGATCAGACCGAAT-GAGGGTTACGGCAGTAGGATCGATAGCACGC-
* * * * * * *
22558170 AGGGGGACTGGGCCGATCCCCGGCTTGTGCATTTTG-CTTCTCCGCCCAGCTGAGCGCCCGCATG
63 AGGGGGAC-CGGCCGATCCCCGGCTTGCGCATTCTGCCTT-TCCG-ACGGCTGAGTGCCCGCACG
* * * *
22558234 CCCGTTTCGTGGGTAGGCTTAGGCTTAGGGAGTTCATTCCATGT
125 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
22558278 CTAATCCCCA
Statistics
Matches: 965, Mismatches: 95, Indels: 29
0.89 0.09 0.03
Matches are distributed among these distances:
901 150 0.16
902 254 0.26
903 417 0.43
904 142 0.15
905 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (900 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGAATGAGGGTTACGGCAGTAGGATCGATAGCACGCAGG
GGGACCGGCCGATCCCCGGCTTGCGCATTCTGCCTTTCCGACGGCTGAGTGCCCGCACGCTCGTT
TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGCATACGGAGTTCATTCCCAGTC
TAAGAGTTTGAGCCACGGTGCACATGCTGAGCTCAAGCATGTGCTGGTGCCACATTTCTTTTACC
CGGGGCACCATCGTCGGAGCATCACTGGAGAGCCTAACCGGCGGCATTGAGGGTTTCGACGATTG
GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCACATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTT
GCTGCCACTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCT
CCACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACCTCTACC
AAATTTGGGGACAAAACTCTTTCTAAAAAGTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAA
TCATGAAAAATAAAAAACGGGTCATCTTGCCACAAAACTTCACATGAAGGCTTACGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGAATTGCCACGGCAGAAATATGAAGACGTGCTTGAACCCA
CCTACCACCCATTCGATCCTCGGCTTGCGCATCCTACCTCTTTGCTCTGCTGAGCGCCCGCACAC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATAG
Found at i:22558600 original size:159 final size:159
Alignment explanation
Indices: 22558100--22558600 Score: 476
Period size: 159 Copynumber: 3.2 Consensus size: 159
22558090 CAGTCTAAGT
* * * * * *
22558100 ATATGTAGTTCATTCCCAATG--TAAGATCAGATCGGATCGAGGGTTACGGTAGTAGGATCGATA
1 ATATGGAGTTCATTCCC-ATGTCTAAGATCAGACCGAATCGAGGGTTGCGGCAGCAGGATCGATA
* * * * ** *
22558163 GCATGCAAGGGGGACTGGGCCGATCCCCGGCTTGTGCATTTTGCTTCTCCGCCCAGCTGAGCGCC
65 GCATGTAAGGGGGACTAGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGATCGGCTGAGCGCC
* * *
22558228 CGCATGCCCGTTTCGTGGGTAGGCTTAGGC
130 CGCATGCTCATTTCGTGGGTTGGCTTAGGC
* * *** * * * * *
22558258 TTAGGGAGTTCATT-CCATGTCTAATCCCCAG-CC-AGATCGAGGGTTGTGGCAACGGGACCGAC
1 ATATGGAGTTCATTCCCATGTCTAA-GATCAGACCGA-ATCGAGGGTTGCGGCAGCAGGATCGAT
** ** * * *
22558320 AGCACACTAAGGGGGACCGGGCTGATCCCCGGCTTATGCATTATGCCTCTCCGATCGGCTCAGCG
64 AGCA-TGTAAGGGGGACTAGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGATCGGCTGAGCG
*
22558385 CCCGCATGCTCATTTCGTGGGTTGACTTAGGC
128 CCCGCATGCTCATTTCGTGGGTTGGCTTAGGC
* * * *
22558417 TTACGGAGTTCATTCCCA-ATCTAAGATTAGACCGAATCGAGGGTTGCGGCAGCAGGATCGATAG
1 ATATGGAGTTCATTCCCATGTCTAAGATCAGACCGAATCGAGGGTTGCGGCAGCAGGATCGATAG
* * * * * * *
22558481 CATGTAGGGGGGGACTAGGTCGATCCTCGGCTTGCGCATTCTACCTCTCTGATCGGCTGAGCGCC
66 CATGTA-AGGGGGACTAGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGATCGGCTGAGCGCC
* *
22558546 CGCACGCTCATTTCGTGGGTTGGTTTAGGC
130 CGCATGCTCATTTCGTGGGTTGGCTTAGGC
*
22558576 ATATGAAGTTCATT-CCATGTCTAAG
1 ATATGGAGTTCATTCCCATGTCTAAG
22558601 CATATGGAGT
Statistics
Matches: 269, Mismatches: 64, Indels: 19
0.76 0.18 0.05
Matches are distributed among these distances:
156 3 0.01
157 2 0.01
158 45 0.17
159 215 0.80
160 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
ATATGGAGTTCATTCCCATGTCTAAGATCAGACCGAATCGAGGGTTGCGGCAGCAGGATCGATAG
CATGTAAGGGGGACTAGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGATCGGCTGAGCGCCC
GCATGCTCATTTCGTGGGTTGGCTTAGGC
Found at i:22558771 original size:183 final size:184
Alignment explanation
Indices: 22558421--22558811 Score: 489
Period size: 183 Copynumber: 2.1 Consensus size: 184
22558411 TTAGGCTTAC
* * * * *
22558421 GGAGTTCATTCCCAATCTAAGATTAGACCGAATCGAGGGTTGCGGCAGCAGGATCGATAGCATGT
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTACGGCAGCAGGATCGACAGCA-GC
** * * * * * * * *
22558486 AGGGGGGGACTAGGTCGATCCTCGGCTTGCGCATTCTACCTCTCTGATCGGCTGAGCGCCCGCAC
65 ACAGGGGGACTAGGGCAATCCCCGACTTGCGCATTCTACCTCTCCGACCGACTAAGCGCCCGCAC
* * * * * *
22558551 GCTCATTTCGTGGGTTGGTTTAGGCATATGAAGTTCATTCCATGTCTAAGCATAT
130 ACTCATTTCATGGGTTGGCTTAAGCATACGAAGTTCATTCCAAGTCTAAGCATAT
* * *
22558606 GGAGTTCATTCCCAGTCTATGATCAGACCGAATCGAGGGTTACGGTAGTAGGATCGACAGCA-CA
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTACGGCAGCAGGATCGACAGCAGCA
* * * *
22558670 CAGGGGGA-TCGGGCTAATCCCCGACTTGCGTATTCTACCTCTCCGGCCGACTAAGCGCCCGTAC
66 CAGGGGGACTAGGGC-AATCCCCGACTTGCGCATTCTACCTCTCCGACCGACTAAGCGCCCGCAC
*
22558734 ACTCATTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCAAGTCTAAGCATAT
130 ACTCATTTCATGGGTTGGCTTAAGCATACGAAGTTCATTCCAAGTCTAAGCATAT
22558789 GGAGTTCATTCCCAGTCTAAGAT
1 GGAGTTCATTCCCAGTCTAAGAT
22558812 TTTGAGCCAT
Statistics
Matches: 175, Mismatches: 30, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
182 4 0.02
183 116 0.66
185 55 0.31
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.26
Consensus pattern (184 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTACGGCAGCAGGATCGACAGCAGCA
CAGGGGGACTAGGGCAATCCCCGACTTGCGCATTCTACCTCTCCGACCGACTAAGCGCCCGCACA
CTCATTTCATGGGTTGGCTTAAGCATACGAAGTTCATTCCAAGTCTAAGCATAT
Found at i:22558784 original size:26 final size:26
Alignment explanation
Indices: 22558754--22558809 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
22558744 TGGGTTGGCT
22558754 TAAGCATACGGAGTTCATTCCAAGTC
1 TAAGCATACGGAGTTCATTCCAAGTC
* *
22558780 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCAAGTC
22558806 TAAG
1 TAAG
22558810 ATTTTGAGCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCAAGTC
Found at i:22560043 original size:159 final size:157
Alignment explanation
Indices: 22559688--22560064 Score: 369
Period size: 159 Copynumber: 2.4 Consensus size: 157
22559678 CCCCTGTCAA
* ** * *
22559688 AGCATACAGAGTTCATTCCCAATCTAAGATCGAACCAAACTGAGGGTTGTGGCAGCAGGATTGGC
1 AGCATACAGAGTTCATTCCCAATCTAAGATCGAATCGGACCGAGGGTTGTGGCAGCAGGACTGGC
* * ** ** * * * *
22559753 AGCACGCTAGGGGGACTGAGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCAGTTGAGTGC
66 AGCAAGCGAGGGGGACCAAACCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGTGC
*
22559818 CCGCACGCCCATTTCATGGGTTGGCTT
131 CCGCACGCCCATTTCATGGGTTGACTT
** * ** * * *
22559845 AGCCATAGGGAGTTCATT-CCATCTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACTG
1 AG-CATACAGAGTTCATTCCCA-ATCTAAGATCGAATCGGACCGAGGGTTGTGGCAGCAGGACTG
* * * * *
22559909 GCAGCAAGCAGAGGGGGACCAAACCGATCCCTGGCTTGCGTATTATGCCTCTTCGGTCGGCTCAG
64 GCAGCAAGC-GAGGGGGACCAAACCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAG
* * * **
22559974 TGCCCGTACGCTCGTTTTGTGGGTTGACTT
128 TGCCCGCACGCCCATTTCATGGGTTGACTT
* * * *
22560004 ATGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGTTTGCGGCAGCAGGA
1 A-GCATACAGAGTTCATTCCCAATCTAAGATCGAATCGGACCGAGGGTTGTGGCAGCAGGA
22560065 TCGACAGCAC
Statistics
Matches: 170, Mismatches: 45, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
157 5 0.03
158 52 0.31
159 109 0.64
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
AGCATACAGAGTTCATTCCCAATCTAAGATCGAATCGGACCGAGGGTTGTGGCAGCAGGACTGGC
AGCAAGCGAGGGGGACCAAACCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGTGC
CCGCACGCCCATTTCATGGGTTGACTT
Found at i:22560073 original size:159 final size:160
Alignment explanation
Indices: 22559816--22560192 Score: 352
Period size: 160 Copynumber: 2.4 Consensus size: 160
22559806 CCAGTTGAGT
* * * * * ** * * **
22559816 GCCCGCACGCCCATTTCATGGGTTGGCTTAGCCATAGGGAGTTCATTCCATCTCTAAG-CCCCAG
1 GCCCGCACGCTCACTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGATCGGA-
* * * * *
22559880 TCGGACCGAGGGTTGTGGCAGCGGGACTGGCAGCAAGCAGAGG-GGG-ACCAAACCGATCC-CTG
65 TCGGACCGAGGGTTGCGGCAGCAGGACTGACAGCAAGCAG-GGAGGGAACCAAACCAATCCTC-A
* * *
22559942 GCTTGCGTATTATGCCTCTTCGGTCGGCTCAGT
128 GCTTGCGTATTATACCTCTCCGGTCGGCTCAGC
* ** * *
22559975 GCCCGTACGCTCGTTTTGTGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAGATCGGA
1 GCCCGCACGCTCACTTCGTGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCTAAGATCGGA
* * ***
22560039 TCGGACCGAGGTTTGCGGCAGCAGGA-TCGACAGCACGCAGGGAGGGAACCTGGCCAATCCTCAG
65 TCGGACCGAGGGTTGCGGCAGCAGGACT-GACAGCAAGCAGGGAGGGAACCAAACCAATCCTCAG
* **
22560103 CTTGCGTATTCTACCTCTCCGGTCGGCTGTGC
129 CTTGCGTATTATACCTCTCCGGTCGGCTCAGC
** *
22560135 GCCCGCACGCTCACTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 GCCCGCACGCTCACTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG
22560193 CATACAGAGT
Statistics
Matches: 173, Mismatches: 38, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
158 3 0.02
159 82 0.47
160 87 0.50
161 1 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (160 bp):
GCCCGCACGCTCACTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGATCGGAT
CGGACCGAGGGTTGCGGCAGCAGGACTGACAGCAAGCAGGGAGGGAACCAAACCAATCCTCAGCT
TGCGTATTATACCTCTCCGGTCGGCTCAGC
Found at i:22560202 original size:26 final size:26
Alignment explanation
Indices: 22560166--22560218 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22560156 GTTGGTTTAG
*
22560166 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
22560192 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
22560218 G
1 G
22560219 ATTCTGAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:22561788 original size:26 final size:24
Alignment explanation
Indices: 22561752--22561804 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 24
22561742 CTAGGTAAAT
22561752 GGAGTTCATT-CCATGTCTAAGCATAC
1 GGAGTTCATTCCCAT-TCTAA-CAT-C
22561778 GGAGTTCATTCCCATTCTAACATC
1 GGAGTTCATTCCCATTCTAACATC
22561802 GGA
1 GGA
22561805 TCGGACTGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
24 4 0.15
25 3 0.12
26 15 0.58
27 4 0.15
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (24 bp):
GGAGTTCATTCCCATTCTAACATC
Found at i:22562146 original size:159 final size:159
Alignment explanation
Indices: 22561840--22562441 Score: 600
Period size: 159 Copynumber: 3.8 Consensus size: 159
22561830 ACCAGTAGTA
* * * * ** * * *
22561840 GGATTGACAGCATGTAG-GGGGGATC-AGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCC
1 GGATCGACAGCATGCAGAGGGGGATCGAGGCCGATCCCTGACTTACGCATTATGCCTCTCCGGCT
* * * * *
22561903 GGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTAAGGCATACGGAGTTCATTCCATGTCTAA
66 GGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
22561968 GCCCCAGCCAGATCGAGGGTTATGGCAGCG
131 G-CCCAGCCGGACCGAGGGTTGTGGCAGCG
* * * * *
22561998 GGACCGACAGCACGCAGAGGGGGATCGA-GCCGATCCCTGGCTTACGCATTATGCCTCTTCGGTT
1 GGATCGACAGCATGCAGAGGGGGATCGAGGCCGATCCCTGACTTACGCATTATGCCTCTCCGGCT
* * * *
22562062 GGCTCAGCGCCCGTACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCAATCC-TAGCCTA
66 GGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTA
** ** *
22562126 AGATCAGACCGGACCGAGGGTTGCAGCAGCA
130 AGCCCAG-CCGGACCGAGGGTTGTGGCAGCG
* * * * *
22562157 GGATCGACAGCATGCAG-GTGGGACCG-GGCCGATCCTTGACTTATGCATTCTGCCTCTCCGG-T
1 GGATCGACAGCATGCAGAGGGGGATCGAGGCCGATCCCTGACTTACGCATTATGCCTCTCCGGCT
* * * * * * *
22562219 ---TGAGCGCTCGCACGCCCGTTTCTTGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAA
66 GGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
*
22562281 GCCCTAGCTGGACCGAGGGTTGTGGCAGCG
131 GCCC-AGCCGGACCGAGGGTTGTGGCAGCG
** * *
22562311 GGATCGGTAGCATGCAGAGGGGGA-CCAGGCCGAT-CCTCGACTTGCGCATTATGCCTCTCCGGC
1 GGATCGACAGCATGCAGAGGGGGATCGAGGCCGATCCCT-GACTTACGCATTATGCCTCTCCGGC
* * *
22562374 TGGCTCAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCT
65 TGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCT
22562438 AAGC
129 AAGC
22562442 ATACAGAGTT
Statistics
Matches: 358, Mismatches: 71, Indels: 29
0.78 0.16 0.06
Matches are distributed among these distances:
154 88 0.25
155 36 0.10
156 1 0.00
157 1 0.00
158 53 0.15
159 176 0.49
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
GGATCGACAGCATGCAGAGGGGGATCGAGGCCGATCCCTGACTTACGCATTATGCCTCTCCGGCT
GGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
GCCCAGCCGGACCGAGGGTTGTGGCAGCG
Found at i:22562444 original size:26 final size:26
Alignment explanation
Indices: 22562414--22562466 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22562404 GTTGACTTAG
*
22562414 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
22562440 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22562466 G
1 G
22562467 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22562750 original size:343 final size:339
Alignment explanation
Indices: 22562101--22562780 Score: 914
Period size: 343 Copynumber: 2.0 Consensus size: 339
22562091 GTTGACTTAT
* * * *
22562101 GCATACGGAGTTCAATCCTAGCCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * * ** *
22562166 GCATGCAGGTGGGACCGGGCCGATCCTTGACTTATGCATTCTGCCTCTCCGGTTGAGCGCTCGCA
66 GCACGCAGGAGGGACCGGGCCGACCCATGACTTACGCATTCTGCCTCTCCGGCAGAGCGCCCGCA
* * *
22562231 CGCCCGTTTCTTGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAAGCCCTAGCTGGACCG
131 CGCCCATTTCTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCG
* * * *
22562296 AGGGTTGTGGCAGCGGGATCGGTAGCATGCAGAGGGGGACCAGGCCGATCCTCGACTTGCGCATT
196 AGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCAGGCCGATCCTCGACTTGCGCATT
* * * * * *
22562361 ATGCCTCTCCGGCTGGCTCAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTT
261 ATGCCTCTCCGACCGGCTCAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGCAGTT
22562426 CATCCCCAGTCTAA
326 CATCCCCAGTCTAA
* *
22562440 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGC-GACAGTAGGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAG-CAGCAGGATCGAC
* * * * *
22562504 AGCACGTAGGAGGGATCGGGCCGACCCATGGCTTGCGCATTCTGCCTCTCCGGCGGACAGAGTGC
65 AGCACGCAGGAGGGACCGGGCCGACCCATGACTTACGCATTCTGCCTCT-C--CGG-CAGAGCGC
*
22562569 CCGCATGCCCATTT-TGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT
126 CCGCACGCCCATTTCT-TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT
* * *
22562633 GGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGTAGAGGGGGATCAGGCCGATCCTCGGCTTG
190 GGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCAGGCCGATCCTCGACTTG
* * * * *
22562698 CGCATTATGCCTTTCCGACCGGCTCAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGTATAT
255 CGCATTATGCCTCTCCGACCGGCTCAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATAC
*
22562763 GCAGTTCATTCCCAGTCT
320 GCAGTTCATCCCCAGTCT
22562781 TAGATCAAAT
Statistics
Matches: 293, Mismatches: 42, Indels: 8
0.85 0.12 0.02
Matches are distributed among these distances:
338 1 0.00
339 96 0.33
340 1 0.00
342 4 0.01
343 191 0.65
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (339 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
GCACGCAGGAGGGACCGGGCCGACCCATGACTTACGCATTCTGCCTCTCCGGCAGAGCGCCCGCA
CGCCCATTTCTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCG
AGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCAGGCCGATCCTCGACTTGCGCATT
ATGCCTCTCCGACCGGCTCAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGCAGTT
CATCCCCAGTCTAA
Found at i:22562769 original size:159 final size:157
Alignment explanation
Indices: 22562448--22562780 Score: 348
Period size: 159 Copynumber: 2.1 Consensus size: 157
22562438 AAGCATACAG
* * *
22562448 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGTAGGATCGACAGCACGTAG
1 AGTTCATT-CCAGTCTAAGACCAGACTGGACCGAGGGTTGCGACAGCAGGACCGACAGCACGTAG
* * * * ** * *
22562513 GAGGGATCGGGCCGACCCATGGCTTGCGCATTCTGCCTCTCCGGCGGACAGAGTGCCCGCATGCC
65 GAGGGATCAGGCCGACCCATGGCTTGCGCATTATGCCTCTCCGCCGGACACAGCACCCACACGCC
* * *
22562578 CATTTTGTGGGTTGGCTTAGGCATAGGG
130 CATTTCGTGGGTTGACTTAGGCATAGGC
* * * *
22562606 AGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGTA
1 AGTTCATTCCA-GTCTAAG-ACCAGACTGGACCGAGGGTTGCGACAGCAGGACCGACAGCACGTA
* * * *
22562670 GAGGGGGATCAGGCCGATCC-TCGGCTTGCGCATTATGCCTTTCCGACCGG-CTCAGCACCCACA
64 G-GAGGGATCAGGCCGACCCAT-GGCTTGCGCATTATGCCTCTCCG-CCGGACACAGCACCCACA
* * * *
22562733 CGCTCGTTTCGTGGGTTGACTTAGGTATATGC
126 CGCCCATTTCGTGGGTTGACTTAGGCATAGGC
22562765 AGTTCATTCCCAGTCT
1 AGTTCATT-CCAGTCT
22562781 TAGATCAAAT
Statistics
Matches: 143, Mismatches: 26, Indels: 11
0.79 0.14 0.06
Matches are distributed among these distances:
157 3 0.02
158 51 0.36
159 83 0.58
160 6 0.04
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
AGTTCATTCCAGTCTAAGACCAGACTGGACCGAGGGTTGCGACAGCAGGACCGACAGCACGTAGG
AGGGATCAGGCCGACCCATGGCTTGCGCATTATGCCTCTCCGCCGGACACAGCACCCACACGCCC
ATTTCGTGGGTTGACTTAGGCATAGGC
Found at i:22562945 original size:26 final size:26
Alignment explanation
Indices: 22562915--22562967 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22562905 GTTGGCTTAG
22562915 GCATACGAACTTCA-TTCCATGTCTAA
1 GCATACGAACTTCATTTCCA-GTCTAA
* *
22562941 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGAACTTCATTTCCAGTCTAA
22562967 G
1 G
22562968 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAACTTCATTTCCAGTCTAA
Found at i:22563607 original size:26 final size:26
Alignment explanation
Indices: 22563577--22563629 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22563567 GTTGACTTTG
* *
22563577 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
22563603 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
22563629 G
1 G
22563630 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:22564167 original size:26 final size:26
Alignment explanation
Indices: 22564131--22564183 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22564121 GTGGACTTAG
*
22564131 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
22564157 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22564183 G
1 G
22564184 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22564444 original size:159 final size:158
Alignment explanation
Indices: 22564228--22564822 Score: 579
Period size: 159 Copynumber: 3.7 Consensus size: 158
22564218 GACAGTATGA
* ** *
22564228 AGGGGGACCAGG-TCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATTGACTGAGCACCCGCACG
1 AGGGGGACCAGGCT-GATCCCCAGCTTGCGCATTATGCCTCTCCGGCTGGCTGAGCACCCGCACG
* *
22564292 CCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAG
65 CCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCCCCAGCCAGACCGAG
*
22564357 GGTTATGGCAGCGGGATCGACAGCACGCAG
129 GGTTATGGCAGCGGGATCGACAGCAAGCAG
* * * * * * * * *
22564387 AGGGGGATCGAGTC-GATCCCCAGCTTACGCATTATGCCTTTTC-GATCGGCTCAGCACCCGTAT
1 AGGGGGA-CCAGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCT-GGCTGAGCACCCGCAC
* * * * * *
22564450 GCTCATTTCGTTGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTCAGATCGAACCGAACCAG
64 GCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCT-A-A--G-CCCCAGCCAG
* * * *
22564515 ACCAAAGGTTA-GAGCAACAGGATCGACAGCAAGCAG
123 ACCGAGGGTTATG-GCAGCGGGATCGACAGCAAGCAG
* * * * *
22564551 -GGGGGACCAGGCTGATCCCCGGCTTGTGCATTCTACCTCTCCGGCTGGCTGAGCTCCCGCACGC
1 AGGGGGACCAGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCTGGCTGAGCACCCGCACGC
** * * * * * *
22564615 CTGTTTCATGGGTTGGCATAGGCATAGGGAGTTCATTGCATGTCTAAGCCCTAGCCAGACCGAGG
66 CCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCCCCAGCCAGACCGAGG
* * * *
22564680 GTTGTGGCAGCGGGACCGATAGCATGCAG
130 GTTATGGCAGCGGGATCGACAGCAAGCAG
* * * * *
22564709 AGGGGGACCAGGCTGATCCTCAACTTGTGCATTATGCCTCTCCGGCTGGCTGAGCGCCCGTACGC
1 AGGGGGACCAGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCTGGCTGAGCACCCGCACGC
* * *
22564774 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
66 CCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTAAGC
22564823 ATACAGAGTT
Statistics
Matches: 345, Mismatches: 75, Indels: 32
0.76 0.17 0.07
Matches are distributed among these distances:
158 34 0.10
159 179 0.52
160 9 0.03
161 2 0.01
162 7 0.02
163 76 0.22
164 38 0.11
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
AGGGGGACCAGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCTGGCTGAGCACCCGCACGC
CCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCCCCAGCCAGACCGAGGG
TTATGGCAGCGGGATCGACAGCAAGCAG
Found at i:22564817 original size:322 final size:315
Alignment explanation
Indices: 22564211--22565317 Score: 959
Period size: 343 Copynumber: 3.4 Consensus size: 315
22564201 TTTGCGATAG
* * * * * **
22564211 CAGGATCGACAGTATG-AAGGGGGACCAGG-TCGATCCCCAGCTTGCGCATTCTGCCTCTCCGAT
1 CAGGATCGACAGCAAGCAGGGGGGACCAGGCT-GATCCCCGGCTTGCGCATTCTACCTCTCCGGC
* * * *
22564274 TGACTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
65 TGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * * * * *
22564339 AGCCCCAGCCAGACCGAGGGTTATGGCAGCGGGATCGACAGCACGCAGAGGGGGATCGAGTCGAT
130 AGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGATAGCATGCAGAGGGGGA-CCAGGCGAT
* * * * *
22564404 CCCCAGCTTACGCATTATGCCTTTTC-GATCGGCTCAGCACCCGTATGCTCATTTCGTTGGTTGA
194 -CCCAGCTTACGCATTATGCCTCTTCGGCT-GGCTCAGCACCCGTACGCTCGTTTCGTGGGTTGA
*
22564468 CTTATGCATACGGAGTTCATTCCCAGTCTCAGATCGAACCGAACCAGACCAAAGGTTAGAGCAA
257 CTTATGCATACGGAGTTCATTCCCAGTCTCAGATCGAATCGAACCAGACC--AGGTT-G-G-AA
*
22564532 CAGGATCGACAGCAAGCAGGGGGGACCAGGCTGATCCCCGGCTTGTGCATTCTACCTCTCCGGCT
1 CAGGATCGACAGCAAGCAGGGGGGACCAGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGGCT
* * * *
22564597 GGCTGAGCTCCCGCACGC-CTGTTTCATGGGTTGGCATAGGCATAGGGAGTTCATTGCATGTCTA
66 GACTGAGCGCCCGCACGCTC-GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
*
22564661 AGCCCTAGCCAGACCGAGGGTTGTGGCAGCGGGACCGATAGCATGCAGAGGGGGACCAGGCTGAT
130 AGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGATAGCATGCAGAGGGGGACCAGGC-GAT
* ** * * *
22564726 CCTCAACTTGTGCATTATGCCTCTCCGGCTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGAC
194 CC-CAGCTTACGCATTATGCCTCTTCGGCTGGCTCAGCACCCGTACGCTCGTTTCGTGGGTTGAC
* *
22564791 TTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCACAGTCTAAGATCGAACC
258 TTATGCATACGGAGTTCATTCCCAG--T---C-T-C--AG---A-T--C-G----A-ATCGAACC
22564856 AGACCGAGGGTTGCG-A
302 AGACC-A-GGTTG-GAA
* * * * * ** * * *
22564872 TAGTA-GGATC-G-ATAGAATGCAGGGG-GGATCGGGCTGATCCCCGACTTGCGCATTCTGCCTC
1 CAGGATCGA-CAGCA-AGCA-G-GGGGGACCA-G--GCTGATCCCCGGCTTGCGCATTCTACCTC
* * * * * *
22564933 TCTGGCCGTCTGAACGCCCGCACGCTCGTTTCATTGGTTGGCTTAGGCATATGGAGTTCATTCCA
59 TCCGGCTGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
* * * *
22564998 TGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGATAGCATGTAGAGGGGGATCGA
124 TGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGATAGCATGCAGAGGGGGA-CCA
* * * * * * *
22565063 GCCGATCCCTGGCTTACGCATTATGCCTCTTCGACCGGCTTAGCACCCGTACGCTTGTTTCATGG
188 GGCGATCCC-AGCTTACGCATTATGCCTCTTCGGCTGGCTCAGCACCCGTACGCTCGTTTCGTGG
* * * * * * * *
22565128 GTTAACTTATGCATACAGAGTTCATTCCTAGTCTAAGAACGTATCGGACC-GAGC-GG-TGG--
252 GTTGACTTATGCATACGGAGTTCATTCCCAGTCTCAGATCGAATCGAACCAGACCAGGTTGGAA
* * * *
22565187 CAGGATCGACAGCATGCAGGGGGGA-CGGGCTGATCCTCGGCTTGCGCATGCTACCTCTCCGG-T
1 CAGGATCGACAGCAAGCAGGGGGGACCAGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGGCT
* * * * *
22565250 CAACTGAGAGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
66 -GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
22565315 AGC
130 AGC
22565318 ATACGGAGTT
Statistics
Matches: 636, Mismatches: 107, Indels: 96
0.76 0.13 0.11
Matches are distributed among these distances:
311 88 0.14
314 4 0.01
315 5 0.01
316 6 0.01
317 3 0.00
318 2 0.00
321 24 0.04
322 227 0.36
323 3 0.00
324 1 0.00
327 2 0.00
328 2 0.00
329 1 0.00
331 3 0.00
334 3 0.00
335 1 0.00
337 2 0.00
338 3 0.00
339 6 0.01
340 7 0.01
341 5 0.01
342 5 0.01
343 228 0.36
344 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (315 bp):
CAGGATCGACAGCAAGCAGGGGGGACCAGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGGCT
GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
GCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGATAGCATGCAGAGGGGGACCAGGCGATCC
CAGCTTACGCATTATGCCTCTTCGGCTGGCTCAGCACCCGTACGCTCGTTTCGTGGGTTGACTTA
TGCATACGGAGTTCATTCCCAGTCTCAGATCGAATCGAACCAGACCAGGTTGGAA
Found at i:22564824 original size:26 final size:26
Alignment explanation
Indices: 22564795--22564847 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22564785 GTTGACTTAG
* *
22564795 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
*
22564821 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
22564847 G
1 G
22564848 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTCTAA
Found at i:22564980 original size:184 final size:185
Alignment explanation
Indices: 22564669--22565006 Score: 446
Period size: 184 Copynumber: 1.8 Consensus size: 185
22564659 TAAGCCCTAG
* * * * *
22564669 CCAGACCGAGGGTTGTGGCAGCGGGACCGATAGCATGCAGAGGGGGACCAGGCTGATCCTCAACT
1 CCAGACCGAGGGTTGCGACAGCAGGACCGATAGAATGCAGAGGGGGACCAGGCTGATCCCCAACT
* * * * *
22564734 TGTGCATTATGCCTCTCCGGCTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCAT
66 TGCGCATTATGCCTCTCCGGCCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
22564799 ACGGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCACAGTCTAAGATCGAA
131 ACGGAGTTCAT-CCCATGTCTAAGCATACAGAGTTCATTCACAGTCTAAGATCGAA
* * * * * *
22564854 CCAGACCGAGGGTTGCGATAGTAGGATCGATAGAATGCAG-GGGGGATCGGGCTGATCCCCGACT
1 CCAGACCGAGGGTTGCGACAGCAGGACCGATAGAATGCAGAGGGGGACCAGGCTGATCCCCAACT
* * * * *
22564918 TGCGCATTCTGCCTCTCTGGCCGTCTGAACGCCCGCACGCTCGTTTCATTGGTTGGCTTAGGCAT
66 TGCGCATTATGCCTCTCCGGCCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
* *
22564983 ATGGAGTTCATTCCATGTCTAAGC
131 ACGGAGTTCATCCCATGTCTAAGC
22565007 CCCAGCCGGA
Statistics
Matches: 129, Mismatches: 23, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
183 3 0.02
184 93 0.72
185 33 0.26
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (185 bp):
CCAGACCGAGGGTTGCGACAGCAGGACCGATAGAATGCAGAGGGGGACCAGGCTGATCCCCAACT
TGCGCATTATGCCTCTCCGGCCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
ACGGAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCACAGTCTAAGATCGAA
Found at i:22570733 original size:26 final size:26
Alignment explanation
Indices: 22570704--22570756 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22570694 GTTGACTTAG
22570704 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
22570730 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
22570756 G
1 G
22570757 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:22571081 original size:159 final size:159
Alignment explanation
Indices: 22570915--22571211 Score: 337
Period size: 159 Copynumber: 1.9 Consensus size: 159
22570905 CCAGCCAGAT
** * * * *
22570915 CGAGGGTTGTGGCAGC-GAGACTGGCAGCACGTAGAAGGGGA-TCGGGCTGATCCCTGGCTTGCG
1 CGAGGGTTGCAGCAGCAG-GACTGACAGCACGCAGAAGGGGACT-GGGCCGATCCCCGGCTTGCG
* * *
22570978 CATTATGCCTCTTCGGTCGGCTTAGCGCCCACACACTCGTTTCATGGGTTGACTTAGGCATACGA
64 CATTATGCCTCTTCGATCGACTGAGCGCCCACACACTCGTTTCATGGGTTGACTTAGGCATACGA
*
22571043 AGTTTATTCCCAGTCTAGGATTGGACCAGTC
129 AGTTCATTCCCAGTCTAGGATTGGACCAGTC
* * * **
22571074 CGAGGGTTGCAGTAGCAGGATTGACAGCATGCAGGGGGGGACTGGGCCGATCCCCGGCTTGCGCA
1 CGAGGGTTGCAGCAGCAGGACTGACAGCACGCAGAAGGGGACTGGGCCGATCCCCGGCTTGCGCA
* * * ** * * * * *
22571139 TTCTGCCTCTTCGATCGACTGAGTGCCCGCACGTTTGTTTCGTGGGTTGGCTTAGGCATCCGGAG
66 TTATGCCTCTTCGATCGACTGAGCGCCCACACACTCGTTTCATGGGTTGACTTAGGCATACGAAG
22571204 TTCATTCC
131 TTCATTCC
22571212 ATGTCTAAGC
Statistics
Matches: 111, Mismatches: 25, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
159 109 0.98
160 2 0.02
ACGTcount: A:0.17, C:0.26, G:0.32, T:0.25
Consensus pattern (159 bp):
CGAGGGTTGCAGCAGCAGGACTGACAGCACGCAGAAGGGGACTGGGCCGATCCCCGGCTTGCGCA
TTATGCCTCTTCGATCGACTGAGCGCCCACACACTCGTTTCATGGGTTGACTTAGGCATACGAAG
TTCATTCCCAGTCTAGGATTGGACCAGTC
Found at i:22571230 original size:26 final size:26
Alignment explanation
Indices: 22571194--22571246 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22571184 GTTGGCTTAG
*
22571194 GCATCCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22571220 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22571246 G
1 G
22571247 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22572058 original size:11 final size:11
Alignment explanation
Indices: 22572044--22572068 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22572034 ACCATCGCCA
22572044 GAGCATCGTCG
1 GAGCATCGTCG
22572055 GAGCATCGTCG
1 GAGCATCGTCG
22572066 GAG
1 GAG
22572069 AGCCTAACCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.24, G:0.40, T:0.16
Consensus pattern (11 bp):
GAGCATCGTCG
Found at i:22572870 original size:158 final size:159
Alignment explanation
Indices: 22572629--22572978 Score: 398
Period size: 159 Copynumber: 2.2 Consensus size: 159
22572619 ACGTTCGTTA
* * ** * * **
22572629 CGTGGGTTGACTTACGCATACGGAGTTCATTCCCA-GTCTAAGATCGAACTGGACCAAGGGTTGC
1 CGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTGAGCCCCAGCCAGACCAAGGGTTGC
* * * * * * *
22572693 AGCAGCATGATCGGTAGCACGC-AAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT
65 AGCAGCAGGACCGGCAGCACGCAAAGGGGGACCAGGCCAATCCCCGACTTGCGCATTATGCCTCT
* * * *
22572757 CCGATCGGCTGAGCGCCCGTACGCCCGTTT
130 CCGATCGGCTCAACGCCCGCACGCCCATTT
* * * * **
22572787 TGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTGAGCCCCAGCCAGACCGAGGGTTGTG
1 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTGAGCCCCAGCCAGACCAAGGGTTGCA
* * *
22572852 GCAGCAGGACCGGCAGCACGCAAAGGGGGACCAGGTCAATCCTCGACTTGCGCATTATGCCTCTT
66 GCAGCAGGACCGGCAGCACGCAAAGGGGGACCAGGCCAATCCCCGACTTGCGCATTATGCCTCTC
* * *
22572917 CGGTCGGCTCAACGCCCGCATGCTCATTT
131 CGATCGGCTCAACGCCCGCACGCCCATTT
22572946 CGTGGGTTGACTTAGGCATACGGAGTTCATTCC
1 CGTGGGTTGACTTAGGCATACGGAGTTCATTCC
22572979 TAGTTGAAGC
Statistics
Matches: 156, Mismatches: 34, Indels: 3
0.81 0.18 0.02
Matches are distributed among these distances:
157 3 0.02
158 65 0.42
159 88 0.56
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.22
Consensus pattern (159 bp):
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTGAGCCCCAGCCAGACCAAGGGTTGCA
GCAGCAGGACCGGCAGCACGCAAAGGGGGACCAGGCCAATCCCCGACTTGCGCATTATGCCTCTC
CGATCGGCTCAACGCCCGCACGCCCATTT
Found at i:22574707 original size:26 final size:26
Alignment explanation
Indices: 22574677--22574729 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22574667 GTTGACTTAG
22574677 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
22574703 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
22574729 G
1 G
22574730 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:22575063 original size:26 final size:26
Alignment explanation
Indices: 22575033--22575085 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22575023 GTTGACTTAG
22575033 GCATACAAAGTTCATCCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
* * *
22575059 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
22575085 G
1 G
22575086 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Done.