Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 221 of 402
Found at i:22575414 original size:159 final size:159
Alignment explanation
Indices: 22575251--22575593 Score: 382
Period size: 159 Copynumber: 2.2 Consensus size: 159
22575241 GCCCCAGTCG
* * ** * *
22575251 GACCGAGGGTTGTGGCAGCGGGACCGACAGTACGCAGAGGAAGACCGGGCTGAT-CCTCGGCTTG
1 GACCGAGGGTTGCGGCAGCAGGACCGACAACACGCAGAGGAAGACCGGCCCGATCCCT-GGCTTG
* * * * * *
22575315 CACATTATGCCTCTTCGGCCTGCTCAGTGCCTGCACGCTCGTTTCATGGGTTGACTTATGCATAC
65 CACATTAGGCCTCTTCAGCCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC
*
22575380 AGAGTTCATTCCCAGTCTAAGATCGGACCA
130 AGAGTTCATTCCCAGTCTAAGATCGAACCA
* ** * * ** * *
22575410 GACCGAGGGTTGCGGCACCAGGATTGACAACATGCAGCGGGGGATCGGCCCGATCCCTGGCTTGT
1 GACCGAGGGTTGCGGCAGCAGGACCGACAACACGCAGAGGAAGACCGGCCCGATCCCTGGCTTGC
* * * * * * * *
22575475 GCATTCGGCCTCTTCAGTCGGCTTAGTGCCCGTACGCTCATTTCATGGGTTGGCTTGGGCATACG
66 ACATTAGGCCTCTTCAGCCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACA
*
22575540 GAGTTCATTCCCAGTCTAAGATCGAACTA
131 GAGTTCATTCCCAGTCTAAGATCGAACCA
*
22575569 GACCGAGGGTTACGGCAGCAGGACC
1 GACCGAGGGTTGCGGCAGCAGGACC
22575594 AGCAACAGGA
Statistics
Matches: 148, Mismatches: 35, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
159 145 0.98
160 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GACCGAGGGTTGCGGCAGCAGGACCGACAACACGCAGAGGAAGACCGGCCCGATCCCTGGCTTGC
ACATTAGGCCTCTTCAGCCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACA
GAGTTCATTCCCAGTCTAAGATCGAACCA
Found at i:22575688 original size:104 final size:104
Alignment explanation
Indices: 22575508--22575695 Score: 270
Period size: 104 Copynumber: 1.8 Consensus size: 104
22575498 TAGTGCCCGT
** * * * *
22575508 ACGCTCATTTCATGGGTTGGCTTGGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTAGACC
1 ACGCTCATTTCATGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAAAATCGAACCAGACC
22575573 GAGGGTTACGGCAGCAGGACCAGCAACAGGATCGACAAC
66 GAGGGTTACGGCAGCAGGACCAGCAACAGGATCGACAAC
* * * *
22575612 ACGCTCATTTCGTGGGTTAACTTATGCATATGAAGTTCATTCCTAGTCTAAAATC-AGACCAGAC
1 ACGCTCATTTCATGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAAAATCGA-ACCAGAC
22575676 CGAGGGTTACGGCAGCAGGA
65 CGAGGGTTACGGCAGCAGGA
22575696 TTGACAGCAT
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
103 1 0.01
104 72 0.99
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (104 bp):
ACGCTCATTTCATGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAAAATCGAACCAGACC
GAGGGTTACGGCAGCAGGACCAGCAACAGGATCGACAAC
Found at i:22577299 original size:26 final size:26
Alignment explanation
Indices: 22577269--22577321 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22577259 GTTGACTTAG
*
22577269 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTATAA
*
22577295 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATCCCCAGTATAA
22577321 G
1 G
22577322 ATCGGACTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTATAA
Found at i:22578285 original size:26 final size:26
Alignment explanation
Indices: 22578233--22578285 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22578223 GTTGACTTAG
*
22578233 GCATACGAAGTTCATCCCTAGTTTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
22578259 GCATACGAAGTTCATTCCC-AGTCTAA
1 GCATACGAAGTTCA-TCCCTAGTCTAA
22578285 G
1 G
22578286 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:22578910 original size:184 final size:184
Alignment explanation
Indices: 22578575--22578944 Score: 449
Period size: 184 Copynumber: 2.0 Consensus size: 184
22578565 GTTGACTTAG
* * * * *
22578575 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACAGTAGTAGGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACAGTAGCAAGATCGATA
** * * * ** *
22578640 GCACACAGGGGGGATCGAGTTGGTCCTCGGCTTGCATATTCTGCCTCTCCGACCATTTGAGTGCC
66 GCACACAGGGGGGATCGAGCCGATCCCCGACTTGCATATTCTGCCTCTCCGACCAGCTGAGCGCC
* * *
22578705 CGCATGCTCGTTTCATGGGTTGGCTTAGGGATATGGAGTTCATTCCATGTCTAA
131 CGCATACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
22578759 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCGACT
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACAGTAGCAAGATCGA-T
* * * * *
22578824 A-CACGCA-GGGGGATCGGGCCGATCCCCGACTTGCGTATTCTGCCTCTTCGACCGGCTGAGCGC
65 AGCACACAGGGGGGATCGAGCCGATCCCCGACTTGCATATTCTGCCTCTCCGACCAGCTGAGCGC
* * *
22578887 CCGC-TCACTTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTGTAA
130 CCGCAT-AC-TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
22578943 GC
1 GC
22578945 TTCAACCGGA
Statistics
Matches: 156, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
182 1 0.01
183 49 0.31
184 104 0.67
185 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (184 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACAGTAGCAAGATCGATA
GCACACAGGGGGGATCGAGCCGATCCCCGACTTGCATATTCTGCCTCTCCGACCAGCTGAGCGCC
CGCATACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:22579118 original size:26 final size:26
Alignment explanation
Indices: 22579088--22579140 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22579078 GTTGACTTAG
22579088 GCATATGGAGTTCATCTCC-AGTCTAA
1 GCATATGGAGTTCAT-TCCTAGTCTAA
22579114 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCTAGTCTAA
22579140 G
1 G
22579141 ATCATACAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCTAGTCTAA
Found at i:22579591 original size:156 final size:157
Alignment explanation
Indices: 22579177--22579615 Score: 458
Period size: 159 Copynumber: 2.8 Consensus size: 157
22579167 GCAGGATCAG
*
22579177 CAGCACGC-AAGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGC
1 CAGCA-GCAAAGGGGGAC-GGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGC
* * *
22579241 GCCCGCACGC-CTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAG
64 GCCCGCACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCACCAG
* * ** *
22579305 TCGGACCGAGGGTTATGGTAGTGGGACCGA
128 TCGGACCGAGGGTTATAGCAGCAGAACCGA
* ** * * * * * * * *
22579335 CAGCATGCAAAGGTGGACCAAGTTGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGGCTCAAC
1 CAGCA-GCAAAGGGGGA-CGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGC
* * * **
22579400 GCCCGTACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCC-CAGTCTAA-CATTAG
64 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAC-GTCTAAGCACCAG
* *
22579463 ATCGGACCGAGGGTTGTAGCAGCAGAATCGA
128 -TCGGACCGAGGGTTATAGCAGCAGAACCGA
* * * *
22579494 TAGCA-C-AGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGTG
1 CAGCAGCAAAGGGGGA-CGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCG
* * *
22579557 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
65 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCA
22579616 TGTGAAGTTC
Statistics
Matches: 224, Mismatches: 50, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
156 91 0.41
157 3 0.01
158 11 0.05
159 117 0.52
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
CAGCAGCAAAGGGGGACGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGC
CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCACCAGTCG
GACCGAGGGTTATAGCAGCAGAACCGA
Found at i:22579730 original size:11 final size:11
Alignment explanation
Indices: 22579711--22579745 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
22579701 CGGGGCACCT
22579711 TCGTCGGAGCA
1 TCGTCGGAGCA
* *
22579722 TCGTTGGAGCT
1 TCGTCGGAGCA
22579733 TCGTCGGAGCA
1 TCGTCGGAGCA
22579744 TC
1 TC
22579746 ACCGGAGAGC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.14, C:0.26, G:0.34, T:0.26
Consensus pattern (11 bp):
TCGTCGGAGCA
Found at i:22579752 original size:22 final size:22
Alignment explanation
Indices: 22579709--22579752 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
22579699 CCCGGGGCAC
***
22579709 CTTCGTCGGAGCATCGTTGGAG
1 CTTCGTCGGAGCATCACCGGAG
22579731 CTTCGTCGGAGCATCACCGGAG
1 CTTCGTCGGAGCATCACCGGAG
22579753 AGCCTAACCG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.16, C:0.27, G:0.34, T:0.23
Consensus pattern (22 bp):
CTTCGTCGGAGCATCACCGGAG
Found at i:22580369 original size:26 final size:26
Alignment explanation
Indices: 22580333--22580385 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22580323 GTTGACTTAG
* *
22580333 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGGCTAA
*
22580359 GCATAAGGAGTTCATTCCCAGGCTAA
1 GCATAAGGAGTTCATCCCCAGGCTAA
22580385 G
1 G
22580386 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGGCTAA
Found at i:22580553 original size:26 final size:26
Alignment explanation
Indices: 22580517--22580569 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22580507 GTTGACTTAG
*
22580517 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22580543 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22580569 G
1 G
22580570 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22580571 original size:184 final size:184
Alignment explanation
Indices: 22580260--22580593 Score: 492
Period size: 184 Copynumber: 1.8 Consensus size: 184
22580250 ACCACCCGTT
* * * ** * *
22580260 CGATCCCCGGCTTGCGCATCCTGCCTCTGTGGTCAGCCGATCGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCAGCTTACGCATCCTACCTCTCCGGTCAGCCGAGCGCCCGCACGCTCATTTCGTGGGT
22580325 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGGCTAAGATC-
66 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGGCTAAGATCA
*
22580389 GAACCGAACTGAGGGTTGCGGTAGCAGGATCGATAGCACGTAGGGGGGATCGGGC
131 G-ACCGAACCGAGGGTTGCGGTAGCAGGATCGATAGCACGTAGGGGGGATCGGGC
* * *
22580444 CGATCCCCAGCTTACGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
1 CGATCCCCAGCTTACGCATCCTACCTCTCCGGTCAGCCGAGCGCCCGCACGCTCATTTCGTGGGT
* * * *
22580509 TGACTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
66 TGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATAAGGAGTTCATTCCCAGGCTAAGATC
*
22580573 AGACCGATCCGAGGGTTGCGG
130 AGACCGAACCGAGGGTTGCGG
22580594 CAGCTGAACC
Statistics
Matches: 132, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
183 3 0.02
184 128 0.97
185 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (184 bp):
CGATCCCCAGCTTACGCATCCTACCTCTCCGGTCAGCCGAGCGCCCGCACGCTCATTTCGTGGGT
TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGGCTAAGATCA
GACCGAACCGAGGGTTGCGGTAGCAGGATCGATAGCACGTAGGGGGGATCGGGC
Found at i:22580931 original size:157 final size:159
Alignment explanation
Indices: 22580619--22581057 Score: 476
Period size: 158 Copynumber: 2.8 Consensus size: 159
22580609 CAGGATCAGT
* * *
22580619 AGCACACAAGGTGGGATAGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGT-CGACTGAGC
1 AGCACGCAAGG-GGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTC-GTCCGACTGAGC
** * * * * *
22580683 ACCCGCACGCTCGTTTCGTATGTTGGCTTAGGCATACAGAGTTAATTCCCAATCTAA-CATCAGA
64 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAGA
* * * *
22580747 CCGGACTGAGGGCTGCGGTAGTAGGATCGAC
129 CCAGACCGAGGGCTGCGGCAGCAGGATCGAC
*
22580778 AGCACGCAAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGGCTCTTC-TCCGACTGAGCAC
1 AGCACGCAAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGTCCGACTGAGCAC
* * * * *
22580842 CCGCACGCCCATTTTGTGGGTTGACTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-C
66 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCACCAGAC
* * * *
22580905 CAGACCGAGGGTTGTGGCAGCGGGATCGGC
130 CAGACCGAGGGCTGCGGCAGCAGGATCGAC
* ** * * * * * *
22580935 AGCACGTAGAGGGGGGCCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGC-
1 AGCACGCA-AGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGTCCGACTGAGCA
* * *
22580999 GCCGAACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGCA
65 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
22581058 TACGGAGTTC
Statistics
Matches: 232, Mismatches: 42, Indels: 13
0.81 0.15 0.05
Matches are distributed among these distances:
156 4 0.02
157 82 0.35
158 125 0.54
159 21 0.09
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.23
Consensus pattern (159 bp):
AGCACGCAAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGTCCGACTGAGCAC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAGACC
AGACCGAGGGCTGCGGCAGCAGGATCGAC
Found at i:22581065 original size:26 final size:26
Alignment explanation
Indices: 22581029--22581089 Score: 122
Period size: 26 Copynumber: 2.3 Consensus size: 26
22581019 GTTGACTTAT
22581029 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22581055 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22581081 GCATACGGA
1 GCATACGGA
22581090 TCAGACTGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22581244 original size:26 final size:26
Alignment explanation
Indices: 22581215--22581267 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22581205 GTTAGCTTAG
22581215 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
22581241 GCATTCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22581267 G
1 G
22581268 ACTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22581985 original size:26 final size:26
Alignment explanation
Indices: 22581935--22581987 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22581925 GTTGACTTAG
* *
22581935 GCATATGGAGTTCATCCTCAGTCTAA
1 GCATACGGAGTTCATCCTCAATCTAA
22581961 GCATACGGAGTTCATTCC-CAATCTAA
1 GCATACGGAGTTCA-TCCTCAATCTAA
22581987 G
1 G
22581988 ATCAGACTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAATCTAA
Found at i:22582388 original size:157 final size:155
Alignment explanation
Indices: 22581961--22582448 Score: 523
Period size: 158 Copynumber: 3.1 Consensus size: 155
22581951 CTCAGTCTAA
* * * *
22581961 GCATACGGAGTTCATTCCCAATCTAAGATCAGACTGAACCAAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCA-TCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCG-TAGCAGGATCGACA
* * * *
22582026 GCACGCAGGGGGGACCGGATCGATCCCCGACTTACGTATTCTGCCTCTACGGCCGGCTGAGCACC
64 GCACGCAGGGGGGACCGG-CCGATCCCCGACTTACGTATTCTGCCTCTCCGACCGGCTGAGCGCC
*
22582091 CGCACG-TCCATTTCGTGGGTTGGCTTAG
128 CGCACGCT-CGTTTCGTGGGTTGGCTTAG
* ** * * * * *
22582119 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCGAGGGTTGTGGTAGCGGGACCGAC
1 GCATACGGAGTTCATCCCA-GTCTAAG-ATCAGACTGGACCAAGGGTTG-CGTAGCAGGATCGAC
* * * * *
22582183 AGCATGCAGAGGGGGACCAGGCCGATCCCCGACTTGCGTATTAT-CCTCTCCGACCGGTTTAGCG
63 AGCACGCAG-GGGGGACC-GGCCGATCCCCGACTTACGTATTCTGCCTCTCCGACCGGCTGAGCG
* * * *
22582247 CCTGCATGCTCGTTTTGTGGGTTGACTTAG
126 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** *
22582277 GCATACAAAGTTCATCCCAGTCTAAGATTAGACTGGACCAAGGGTTGCAGTAGCAGGATCGACAG
1 GCATACGGAGTTCATCCCAGTCTAAGATCAGACTGGACCAAGGGTTGC-GTAGCAGGATCGACAG
* * * * * *
22582342 CACACAGGGGGGACCTGGCCTATCCCCGGCTTACGCATTCTGCCTCTCCGACTGGCTGAACGCCC
65 CACGCAGGGGGGACC-GGCCGATCCCCGACTTACGTATTCTGCCTCTCCGACCGGCTGAGCGCCC
* *
22582407 GTACGCTTGTTTCGTGGGTTGGCTTAG
129 GCACGCTCGTTTCGTGGGTTGGCTTAG
22582434 GCATACGGAGTTCAT
1 GCATACGGAGTTCAT
22582449 TCCACGTATA
Statistics
Matches: 264, Mismatches: 57, Indels: 19
0.78 0.17 0.06
Matches are distributed among these distances:
156 31 0.12
157 95 0.36
158 102 0.39
159 34 0.13
160 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGTAGCAGGATCGACAGC
ACGCAGGGGGGACCGGCCGATCCCCGACTTACGTATTCTGCCTCTCCGACCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:22583839 original size:26 final size:26
Alignment explanation
Indices: 22583809--22583861 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22583799 GTTGACTTAG
22583809 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
** * *
22583835 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
22583861 G
1 G
22583862 ATTGAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:22583996 original size:183 final size:184
Alignment explanation
Indices: 22583658--22584045 Score: 451
Period size: 183 Copynumber: 2.1 Consensus size: 184
22583648 TAGGCAAACA
* * * * *
22583658 GAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCTACAGTAGGATCGATAGCACACA
1 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACACA
* * *
22583723 GGAGGGATCAGATCGATCCCCGGCCTATGCATTCTGCCTCTCCGACCGATTGAGCGCCCGTACGC
66 GGAGGGATCAGATCGATCCCCGGCCTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGC
*
22583788 TCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCCA-GTCTAAGCATACG
131 TCGTTTCATGGGTTGACTTAGGCATACAAAGTTCAT-CCCATGTCGAAGCATACG
* * * * * *
22583842 GAGTTCATTCCTAGTCTAAGATTGAACCGGACCGAGGGTTGGGGCAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACACA
* * * * * * *
22583907 GGGGGGA-CTGGGTTGATCCCCGGCTTGCGCA-TCTGCCTCTCCGGCC-AGCTGAGCGCCCGCAC
66 GGAGGGATC-AGATCGATCCCCGGCCTACGCATTCTGCCTCTCCGACCGA-CTGAGCGCCCGCAC
* *** * *
22583969 GCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTTATTCCATGTCGAAGCATACG
129 GCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCATGTCGAAGCATACG
* *
22584025 AAGTTCATTCCCAATCTAAGA
1 GAGTTCATTCCCAGTCTAAGA
22584046 GTTTGAGCCA
Statistics
Matches: 170, Mismatches: 31, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
182 4 0.02
183 90 0.53
184 76 0.45
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (184 bp):
GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACACA
GGAGGGATCAGATCGATCCCCGGCCTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGC
TCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCATGTCGAAGCATACG
Found at i:22585238 original size:26 final size:26
Alignment explanation
Indices: 22585208--22585260 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22585198 GTTGGCTTAG
22585208 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
22585234 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22585260 G
1 G
22585261 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22585813 original size:367 final size:375
Alignment explanation
Indices: 22585157--22585831 Score: 951
Period size: 367 Copynumber: 1.8 Consensus size: 375
22585147 TGCACATTCT
* * *
22585157 GCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCA
1 GCCTCTCCGGTCGGCTGAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * *
22585222 TTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGCGTTACGATA
66 TCCCATGTCGAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGCG-T--GATA
* * **
22585287 GCAGGACCAGCAGTAGGATCGGCAGCATGCAGGTTGGGATCGGGCTGATCCCTGGCTTGTGCATT
128 GCAGGA-CAGCAGTA-GATCGGCAGCACGCAGG-TGGGACCGGGCTGATCCCTGGCTTACGCATT
*
22585352 CTACCTCTACGGCTGGCGGAGTGCCCGTACGCTCATTTCGTAGGTTGGCTTAGGCATACGAAGTT
190 CTACCTCTACGGCTGGCGGAGCGCCCGTACGCTCATTTCGTAGGTTGGCTTAGGCATACGAAGTT
*
22585417 CATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGTAGCAGGACTGGCAGCGGGATCAGTA
255 CATTCCATGTCTAAGCCCCAGTCGGATCGAGAGTTGTGGTAGCAGGACTGGCAGCGGGATCAGTA
22585482 GCATACAGAGAGGGACCGAACTGATCCCTGACTGGCGCATTATGCCTCTCCGACCA
320 GCATACAGAGAGGGACCGAACTGATCCCTGACTGGCGCATTATGCCTCTCCGACCA
*
22585538 GCCTCTCCGGTCGGCTGAGCGCCCATACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGGTCGGCTGAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
* *
22585603 TCCC-TAGTCGAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-TCTGGATCGAG-G-GTTA-
66 TCCCAT-GTCGAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGCGTGATAG
22585663 C-GG-CAGCA-T-GATCGGCAGCACGCAGG-GGGACCGGG-TCGATCCCTGGCTTACGCATTCTA
129 CAGGACAGCAGTAGATCGGCAGCACGCAGGTGGGACCGGGCT-GATCCCTGGCTTACGCATTCTA
* ** * * * * *
22585722 CCTCTCCGG-TCGGTTGAGCGCCCGTACGCTCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCA
193 CCTCTACGGCT-GGCGGAGCGCCCGTACGCTCATTTCGTAGGTTGGCTTAGGCATACGAAGTTCA
* *
22585786 TTGCATGTCTAAGCCCCAGTCGGATCGAGAGTTGTGGTAGCGGGAC
257 TTCCATGTCTAAGCCCCAGTCGGATCGAGAGTTGTGGTAGCAGGAC
22585832 CGACAGCACA
Statistics
Matches: 265, Mismatches: 25, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
366 2 0.01
367 124 0.47
369 16 0.06
371 1 0.00
372 5 0.02
374 2 0.01
375 1 0.00
376 3 0.01
380 4 0.02
381 107 0.40
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (375 bp):
GCCTCTCCGGTCGGCTGAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
TCCCATGTCGAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGCGTGATAGCA
GGACAGCAGTAGATCGGCAGCACGCAGGTGGGACCGGGCTGATCCCTGGCTTACGCATTCTACCT
CTACGGCTGGCGGAGCGCCCGTACGCTCATTTCGTAGGTTGGCTTAGGCATACGAAGTTCATTCC
ATGTCTAAGCCCCAGTCGGATCGAGAGTTGTGGTAGCAGGACTGGCAGCGGGATCAGTAGCATAC
AGAGAGGGACCGAACTGATCCCTGACTGGCGCATTATGCCTCTCCGACCA
Found at i:22585999 original size:159 final size:159
Alignment explanation
Indices: 22585686--22586115 Score: 406
Period size: 159 Copynumber: 2.7 Consensus size: 159
22585676 GGCAGCACGC
* * * * *
22585686 AGGGGGACCGGGTCGATCCCTGGCTTACGCATTCTACCTCTCCGGTCGGTTGAGCGCCCGTACGC
1 AGGGGGACCGGGTCGATCCCTGACTTACGCATCCTACCTCTCCGGTCGGCTGAGCACCCGCACGC
* * * * * * ** *
22585751 TCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAAGCCCCAGTCGGATCGAGA
66 TCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACGAGA
* * *
22585816 GTTGTGGTAGCGGGACCGACAGCACATAG
131 GTTGCGATAGCAGGACCGACAGCACATAG
* *
22585845 AGGGGGACCGGGTCGATCCCTGACTTACGCATCCTGCCTCTTCGGTCGGCTGAGCACCCGCACGC
1 AGGGGGACCGGGTCGATCCCTGACTTACGCATCCTACCTCTCCGGTCGGCTGAGCACCCGCACGC
* * * *
22585910 TCAG-TTCGTTGTTTAGCTTAGGCATACGGAGTTCGTTCCCA-GTCTAAG-ATCAGACCAAACTG
66 TC-GTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAAAC-G
* * * *
22585972 AGGGTTGCGATAGTAGGATCGATAGCACA-ATG
128 AGAGTTGCGATAGCAGGACCGACAGCACATA-G
* * * * * * ** *
22586004 -GGTGGGATCGGG-CTGGT-CCTCGACTTATGCATTCTACCTCTCCGATCGACTGAGTGTCCAGC
1 AGG-GGGACCGGGTC-GATCCCT-GACTTACGCATCCTACCTCTCCGGTCGGCTGAG-CACCCGC
*
22586066 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
62 ACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTA
22586116 CGCATACGGA
Statistics
Matches: 219, Mismatches: 42, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
158 13 0.06
159 159 0.73
160 47 0.21
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.26
Consensus pattern (159 bp):
AGGGGGACCGGGTCGATCCCTGACTTACGCATCCTACCTCTCCGGTCGGCTGAGCACCCGCACGC
TCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACGAGA
GTTGCGATAGCAGGACCGACAGCACATAG
Found at i:22586337 original size:26 final size:26
Alignment explanation
Indices: 22586301--22586353 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22586291 GTTGACTTAG
22586301 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22586327 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22586353 G
1 G
22586354 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22586637 original size:159 final size:158
Alignment explanation
Indices: 22586327--22586710 Score: 414
Period size: 159 Copynumber: 2.4 Consensus size: 158
22586317 CCCAGTCTAA
** * * *
22586327 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCAGATTGAGGGTTGCT-ACAGCAGGA-TCG
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCAGACTGAGGGTTG-TGGCAGCAGGACT-G
* * * *
22586389 GCAGCACACAGGGGGGATCGGGCTGATCCCCGACTTGCATATTCTACCTCTCCGATCGACTGAGC
63 GCAGCACACAGGGGGGACCGAGCTGATCCCCGACTTACACATTCTACCTCTCCGATCGACTGAGC
* *** *
22586454 GCCTGTACGCCCGTTTCGTGGGTTGGCTTAG
128 ACCCACACGCCCGTTTCATGGGTTGGCTTAG
* *
22586485 GCTTAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACTGAGGGTTGTGGCAGCAGGACTGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACTGAGGGTTGTGGCAGCAGGACTGGCA
** * * * *
22586550 GCATGCAGAGGGGGACCGAGCTGATCCTCGGCTTACGCATTCTACCTTTCCGATCGACTGAGCAC
66 GCACACAG-GGGGGACCGAGCTGATCCCCGACTTACACATTCTACCTCTCCGATCGACTGAGCAC
** *
22586615 CCACACGTTCGTTTTATGGGTTGGCTTAG
130 CCACACGCCCGTTTCATGGGTTGGCTTAG
* * * * * * * *
22586644 GCATACGGAGTTCATTTCATTTCTAAGCCCCAGCCAGACCGAGGGTTATGGTAGTAGGACTAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACTGAGGGTTGTGGCAGCAGGACTGGCA
22586709 GC
66 GC
22586711 GAGATCGACA
Statistics
Matches: 187, Mismatches: 35, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
157 4 0.02
158 56 0.30
159 127 0.68
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACTGAGGGTTGTGGCAGCAGGACTGGCA
GCACACAGGGGGGACCGAGCTGATCCCCGACTTACACATTCTACCTCTCCGATCGACTGAGCACC
CACACGCCCGTTTCATGGGTTGGCTTAG
Found at i:22587865 original size:26 final size:26
Alignment explanation
Indices: 22587829--22587881 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22587819 GTTGGCTTAG
**
22587829 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22587855 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22587881 G
1 G
22587882 AGTTTGAGCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22589372 original size:13 final size:13
Alignment explanation
Indices: 22589354--22589378 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22589344 CGTGCATTAT
22589354 GCCTCTCCGGCCG
1 GCCTCTCCGGCCG
22589367 GCCTCTCCGGCC
1 GCCTCTCCGGCC
22589379 AGTTGAGCAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.56, G:0.28, T:0.16
Consensus pattern (13 bp):
GCCTCTCCGGCCG
Found at i:22590013 original size:12 final size:12
Alignment explanation
Indices: 22589996--22590025 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
22589986 AAGGGTTGCT
22589996 GCAGCAGGACCA
1 GCAGCAGGACCA
*
22590008 GCAGCAGGATCA
1 GCAGCAGGACCA
22590020 GCAGCA
1 GCAGCA
22590026 TGCAGGGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.30, G:0.33, T:0.03
Consensus pattern (12 bp):
GCAGCAGGACCA
Found at i:22590489 original size:26 final size:26
Alignment explanation
Indices: 22590459--22590510 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22590449 GTTGGCTTAG
22590459 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22590485 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22590511 AAGTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22590597 original size:11 final size:11
Alignment explanation
Indices: 22590581--22590612 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
22590571 CTCGGGGCAC
22590581 CATCGTCGGAG
1 CATCGTCGGAG
*
22590592 CATCGTCAGAG
1 CATCGTCGGAG
22590603 CATCGTCGGA
1 CATCGTCGGA
22590613 TAGCCTAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.22, C:0.28, G:0.31, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:22591543 original size:159 final size:160
Alignment explanation
Indices: 22591300--22591718 Score: 462
Period size: 159 Copynumber: 2.6 Consensus size: 160
22591290 GGACTAGGTT
* * * * *
22591300 GATCCCTGGCTTACGCATTCTGCCTCTCCGGCC-AGCTAAGCTCCTGCACG-TCTGTTTCCTGGG
1 GATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGA-CTAAGCACCTGCACGCTC-ATTTCGTGGG
* * * *
22591363 TTGGCTTAGGCATA-GTGAGTTCATT-CCATGTCTAAG--CCGTAGTCGGACCTAGGGTTATGGC
64 TTGGCTTAGGCATACGTGAGTTCATTCCCA-GTCTAAGATCAG-A-TCAGACCGAGGGTTAGGGC
*
22591424 AGCGGGATCGACAGCACGCAAAGGG-GGATCGGACC
126 AGCAGGATCGACAGCACG-AAAGGGAGGATCGGACC
* * * *
22591459 GATCCCTTGCTTGCGCATTATGCCTCTCCGACCGACTCAGCACCTACACGCTCATTTCGTGGGTT
1 GATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTAAGCACCTGCACGCTCATTTCGTGGGTT
* * *
22591524 GACTTAGGCATACGT-AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGGGGCAGTAG
66 GGCTTAGGCATACGTGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTAGGGCAGCAG
* *
22591588 GATCGACAGCACGTAAGGGAGGATCGGGCC
131 GATCGACAGCACGAAAGGGAGGATCGGACC
* * * * *
22591618 GAT-CCTCGGCTTGCGCATTCTGCCTCTCCGACCGATTGAGCACCCGCACACTCATTTTGTGGGT
1 GATCCCT-GGCTTGCGCATTCTGCCTCTCCGACCGACTAAGCACCTGCACGCTCATTTCGTGGGT
* * *
22591682 TGGCTTAGGCATAC-AGAGTTTATTCCCAATCTAAGAT
65 TGGCTTAGGCATACGTGAGTTCATTCCCAGTCTAAGAT
22591719 AAGACCGAAC
Statistics
Matches: 220, Mismatches: 31, Indels: 18
0.82 0.12 0.07
Matches are distributed among these distances:
158 8 0.04
159 201 0.91
160 9 0.04
161 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.25
Consensus pattern (160 bp):
GATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTAAGCACCTGCACGCTCATTTCGTGGGTT
GGCTTAGGCATACGTGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTAGGGCAGCAG
GATCGACAGCACGAAAGGGAGGATCGGACC
Found at i:22592080 original size:26 final size:26
Alignment explanation
Indices: 22592044--22592096 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22592034 GTTGACTTAG
22592044 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
22592070 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22592096 G
1 G
22592097 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22592571 original size:146 final size:146
Alignment explanation
Indices: 22592322--22592588 Score: 383
Period size: 146 Copynumber: 1.8 Consensus size: 146
22592312 GCTGATCCCT
* * * * * *
22592322 GGCTTGCGCATTATGCCTCTCCGTCCGGCTTAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAG
1 GGCTTGCACATTATGCCTCTCAGTCCAGCTGAGCACCCGAACACTCATTTCGTGGGTTGACTTAG
* *
22592387 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTACGACAGCACGTAGGGGG
66 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTACGACAGCACGTAGGGGG
22592452 GATCAGGCCGATCCTC
131 GATCAGGCCGATCCTC
* * *
22592468 GGCTTGCACATTCTGCCTCTGCAG-CCAGCTGAGCACCCGCACACTCATTTCGTGGGTTGCCTTA
1 GGCTTGCACATTATGCCTCT-CAGTCCAGCTGAGCACCCGAACACTCATTTCGTGGGTTGACTTA
* * * *
22592532 GGCATACAGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCA
65 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTACGACAGCA
22592589 GGATCGATAG
Statistics
Matches: 105, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
146 103 0.98
147 2 0.02
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (146 bp):
GGCTTGCACATTATGCCTCTCAGTCCAGCTGAGCACCCGAACACTCATTTCGTGGGTTGACTTAG
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTACGACAGCACGTAGGGGG
GATCAGGCCGATCCTC
Found at i:22593040 original size:26 final size:26
Alignment explanation
Indices: 22593010--22593062 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22593000 GTTGACTTAG
22593010 GCATACAGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
* *
22593036 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
22593062 G
1 G
22593063 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:22593177 original size:26 final size:26
Alignment explanation
Indices: 22593140--22593192 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22593130 GTTGGCTTAG
22593140 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
*
22593166 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
22593192 G
1 G
22593193 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:22593367 original size:26 final size:26
Alignment explanation
Indices: 22593337--22593389 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22593327 GTTGACTTAG
22593337 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22593363 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22593389 G
1 G
22593390 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22594369 original size:26 final size:26
Alignment explanation
Indices: 22594339--22594391 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22594329 GCTGACTTAG
22594339 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
22594365 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
22594391 G
1 G
22594392 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:22594560 original size:26 final size:26
Alignment explanation
Indices: 22594523--22594575 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22594513 GTTGGCTTAG
*
22594523 GCATACGGAGTTCATT-CCACGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
22594549 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22594575 G
1 G
22594576 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22594569 original size:184 final size:190
Alignment explanation
Indices: 22594334--22594745 Score: 473
Period size: 195 Copynumber: 2.2 Consensus size: 190
22594324 CATGGGCTGA
* * * * *
22594334 CTTAGGCATACGAAGTTCA-TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATTGGA
1 CTTAGGCATACGGAGTTCATTCCAC-GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGA
* *
22594398 CCAGACCGAGCGTTGCGG-CA-G-TAGAATC-GA-CAGCAG-A-CAGGAGGGATCGGGCCGAT-C
65 CCAGACCGAG-GTTGCGGACAGGACAGAAGCAGATCAGCAGCAGCAGGAGGGATCGGGCCGATCC
* * * *
22594455 TCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGG
129 T-CGGCTTGCGCATTCTACCTCTCCGGCCGGTTGAGCGCCCGCACGCTCGTTTCCTAGGTTGG
22594518 CTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGAC
1 CTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGAC
** * * * * * * *
22594583 TGGACTGAGGTTGTGGCAACAGGACCAGCAGCAAGATCAGTAGCATGCAGGGGGGATTGGTCCGA
66 CAGACCGAGGTTGCGG--ACAGGA-CAGAAGC-AGATCAGCAGCA-GCAGGAGGGATCGGGCCGA
* *
22594648 TCCTCGGCTTGTGCATTCTACCTCTCCGGCCGGTTGAGTGCCCGCACGCTCGTTTCCTAGGTTGG
126 TCCTCGGCTTGCGCATTCTACCTCTCCGGCCGGTTGAGCGCCCGCACGCTCGTTTCCTAGGTTGG
* *
22594713 CTTAGGCTTACGGAGTTCATTCCATGTCTAAGC
1 CTTAGGCATACGGAGTTCATTCCACGTCTAAGC
22594746 CCCAGTCGCA
Statistics
Matches: 190, Mismatches: 24, Indels: 17
0.82 0.10 0.07
Matches are distributed among these distances:
183 6 0.03
184 61 0.32
185 4 0.02
186 2 0.01
187 1 0.01
189 4 0.02
191 2 0.01
192 5 0.03
193 1 0.01
195 102 0.54
196 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (190 bp):
CTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGAC
CAGACCGAGGTTGCGGACAGGACAGAAGCAGATCAGCAGCAGCAGGAGGGATCGGGCCGATCCTC
GGCTTGCGCATTCTACCTCTCCGGCCGGTTGAGCGCCCGCACGCTCGTTTCCTAGGTTGG
Found at i:22596532 original size:158 final size:157
Alignment explanation
Indices: 22595996--22596533 Score: 530
Period size: 158 Copynumber: 3.4 Consensus size: 157
22595986 GTGTAAGTAA
* * * *
22595996 ACGAAGTTCATTCCCAATCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCAGGATCGATAGCAC
1 ACGAAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCAGGACCAACAGCAC
* * * * * * *
22596061 GCAAGG-GAGACCGGGCCAATCCTCGGCTTACGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGC
66 G-AAGGAGGGATCGGGTCGATCCTCGACTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGC
*
22596125 ACGCCCGTTTCATGGGTTGGCTTAGGCAT
130 ACGCTCGTTTCAT-GGTTGGCTTAGGCAT
* * ** ** * * * *
22596154 AGGGAGTTCATT-CCATGTCTAA-A-CCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCAGCAAC
1 ACGAAGTTCATTCCCA-GTCTAAGATCGGA-CTAGACCGAGGGTTGCGGCAGCAGGACCAACAGC
* * * * * * *
22596216 ACGCAGAGAGGGATCGGGTCGATCC-CCAGCTTACGCATTATACCTCCCCGACCGGCTCAGCACC
64 ACGAAG-GAGGGATCGGGTCGATCCTCGA-CTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACC
* *
22596280 CGCACGCTTGTTTCATAGGTTGACTTAGGCAT
127 CGCACGCTCGTTTCAT-GGTTGGCTTAGGCAT
* * * * * *
22596312 ACGAAGTTCATTCCCATTCTAAGATC-GAATCAGACTGAGGGTTGCGGTAGCAGGATCGACAGCA
1 ACGAAGTTCATTCCCAGTCTAAGATCGGACT-AGACCGAGGGTTGCGGCAGCAGGACCAACAGCA
* * * ** * *
22596376 TGTAGGAGGGATCGGGTCGGTCCTCGACTTACGCATTCTGCCTCTCCGGTTGACTGAGCACCCAC
65 CGAAGGAGGGATCGGGTCGATCCTCGACTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGC
22596441 ACGCTCGTTTCATGGATTGGCTTAGGCAT
130 ACGCTCGTTTCATGG-TTGGCTTAGGCAT
* * *
22596470 ACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCAAGACCAACAGCA
1 ACGAAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCAGGACCAACAGCA
22596534 GGATCGATAG
Statistics
Matches: 297, Mismatches: 71, Indels: 24
0.76 0.18 0.06
Matches are distributed among these distances:
156 4 0.01
157 36 0.12
158 219 0.74
159 37 0.12
160 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.21
Consensus pattern (157 bp):
ACGAAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCAGGACCAACAGCAC
GAAGGAGGGATCGGGTCGATCCTCGACTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCA
CGCTCGTTTCATGGTTGGCTTAGGCAT
Found at i:22597041 original size:26 final size:26
Alignment explanation
Indices: 22596992--22597044 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22596982 GTTGGCTTAG
*
22596992 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
22597018 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
22597044 G
1 G
22597045 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:22598210 original size:26 final size:26
Alignment explanation
Indices: 22598180--22598233 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
22598170 TGGTTTGACT
*
22598180 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAATC
*
22598206 TAGGCATACGGAGTTCATTCCCAATC
1 TAGGCATACGGAGTTCATCCCCAATC
22598232 TA
1 TA
22598234 AGATCAAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAATC
Found at i:22598529 original size:159 final size:158
Alignment explanation
Indices: 22598206--22599771 Score: 1025
Period size: 159 Copynumber: 9.8 Consensus size: 158
22598196 ATCCCCAGTC
* ** * * * *
22598206 TAGGCATACGGAGTTCATTCCCAATCTAAG-ATCAAATCTGATCGAGGGTTGTGGCAGCAAGATC
1 TAGGCATACGGAGTTCATT-CCAGTCTAAGCCCCAGACCGGA-CGAGGGTTGTGGCAGCAGGATC
* * * * *
22598270 GACAGCAC-AT-AGGGGGGA-CTGTGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGTT
64 GACAGCACGCTGA-GGGGGATC-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCT
* * *
22598332 GAGTGCCTGCACG-TCCGTTTCGTCGGTTGGCT
127 GAGCGCCCGCACGCT-CGTTTCGTGGGTTGGCT
* * * *
22598364 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACTGAATCGAGGGTTGTGGCAGCGGGATC
1 TAGGCATACGGAGTTCATTCCA-GTCTAAGCCCCAGACCGGA-CGAGGGTTGTGGCAGCAGGATC
** * * * * * * *
22598428 GGTAGCACGCTGAGGGGGATCGGACCAATCCCTGGCTTGCGCATTATACCTCTCCGGTCGGCTCA
64 GACAGCACGCTGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGA
* *
22598493 GCGCCCGCACGCTCGTTTTGTGGGTTGACT
129 GCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* ** *
22598523 TAGGCATATGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACTGAGGGTTGTGGTAGCAGGATC
1 TAGGCATACGGAGTTCATT-CCAGTCTAAGCCCCAGACCGGAC-GAGGGTTGTGGCAGCAGGATC
* * * * * * *
22598587 AACAGTACG-TAAGGGGGGACCGGGCC-AGTCCCCGACTTACGCATTCTGCCTCTTCGATCGGCT
64 GACAGCACGCTGA-GGGGGATCGGGCCGA-TCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCT
* * *
22598650 GAGCGCCCGCACGCCCATTTCATGGGTTGGCT
127 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* * *
22598682 TAGGCATA-GGCAGTTCATTCCATGTCTAAGCCCCAG-CAGGATCGAGGGTTGTGGTAGCAGGAC
1 TAGGCATACGG-AGTTCATTCCA-GTCTAAGCCCCAGACCGGA-CGAGGGTTGTGGCAGCAGGAT
* * * *** * * * *
22598745 CGACAGCGCGCAGAGGGGG-GCTGGGGTAATCCCTGGCTTGCGTATTCTGCCTCTCC-AGCCGGT
63 CGACAGCACGCTGAGGGGGATC-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-TCGGC
** *
22598808 TGATTGCCCACACGCTCGTTTCGTGGGTTGGCT
126 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* * *
22598841 TAGGCATATGGAGTTCATTCCATGTCTAAGCCCTAG-TCGGAACGAGGGTTACGGTAGCAGGACC
1 TAGGCATACGGAGTTCATTCCA-GTCTAAGCCCCAGACCGG-ACGAGGGTT---GT-----G---
* * * * * * *
22598905 AGCAGCAGGAAT-GGCAGCACGCAGGGGGGGA-CAAGGCCGATCCCCGACTTGCGTATTCTTCCT
53 -GCAGCAGG-ATCGACAGCACGCTGAGGGGGATC-GGGCCGATCCCCGGCTTGCGCATTCTGCCT
* * * * *
22598968 CTCC-AGCTGACTGAGCACCCGCACACTCGTTTCATGGGTTGGCT
115 CTCCGATC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* * * *
22599012 TAGGCATACAGAGTTCATTCCACGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCA--ACGACA
1 TAGGCATACGGAGTTCATTCCA-GTCTAAGCCCCAGACCGGA-CGAGGGTTGTGGCAGCAGGA-T
* ** * * ** *
22599074 CGACAGCACGCAGAGGGGGATCGGGTTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTC
63 CGACAGCACGCTGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTG
* * *
22599139 AGTGCCCGAACGCTCGTTTCGTGGGTTGACT
128 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* * ** * *
22599170 TAGGCATACGAAGTTCATTTCCAGTATAAG-ATCAGACTGGACCGAGGGTTGCGGCAGCAGGATC
1 TAGGCATACGGAGTTCA-TTCCAGTCTAAGCCCCAGACCGGA-CGAGGGTTGTGGCAGCAGGATC
* ** * * * * * *
22599234 GACAGAAC-CCAAGGGGGGACCGGGCCGGTCCCCGACTTGCGCATTCTACCTCTCCGTTTGGCTG
64 GACAGCACGCTGA-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTG
* * * * *
22599298 AGCACCCACACACTCGTTTCATGGGTTGACT
128 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* ** **
22599329 TAGGCATACGAAGTTCATTCCCAGTCTAAG-ATCAGACCGGACTGAGGGTTGCAGCAGCAGGATC
1 TAGGCATACGGAGTTCATT-CCAGTCTAAGCCCCAGACCGGAC-GAGGGTTGTGGCAGCAGGATC
* * * * * * * *
22599393 GACAACACG-T-AGGGGGGA-CTAGGTCGGTCCCCAGCTTTCGCATTCTGCCTCTCCAACCGGCT
64 GACAGCACGCTGA-GGGGGATC-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCT
* * * * *
22599455 GAGTGGCCGCATGCCCGTTTCATGGGTTGGCT
127 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* * * * ** *
22599487 TAGGAATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCGGACCGATGGTTGTGGCAGTGGGACC
1 TAGGCATACGGAGTTCATTCCA-GTCTAAGCCCCAGACCGGA-CGAGGGTTGTGGCAGCAGGATC
* * * * * * *
22599551 GATAGCACG-TAGAGGGGGATCGGGTCGATCCCCAGCTTACGCATTATGCCTCTTCGATCGGCTT
64 GACAGCACGCT-GAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTG
* * *
22599615 AGCACCCGAACGCTCGTTTCGTGGGTTGACT
128 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
** * ** * * **
22599646 TAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACTAGACTAAGGGTTGCGGTGGCAGGATC
1 TAGGCATACGGAGTTCATT-CCAGTCTAAGCCCCAGACCGGAC-GAGGGTTGTGGCAGCAGGATC
** * * * * *
22599710 GACAGCACG-T-AGGGGGGATCGAACCGATCCCCGACTAGCACATTCTGCCTCACCGGTCGGCT
64 GACAGCACGCTGA-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCT
22599772 TCTCCGACCG
Statistics
Matches: 1100, Mismatches: 248, Indels: 120
0.75 0.17 0.08
Matches are distributed among these distances:
156 1 0.00
157 13 0.01
158 335 0.30
159 598 0.54
160 23 0.02
162 2 0.00
163 1 0.00
167 1 0.00
168 2 0.00
170 2 0.00
171 121 0.11
172 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
TAGGCATACGGAGTTCATTCCAGTCTAAGCCCCAGACCGGACGAGGGTTGTGGCAGCAGGATCGA
CAGCACGCTGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGGCT
Found at i:22598782 original size:318 final size:317
Alignment explanation
Indices: 22598206--22599675 Score: 1166
Period size: 317 Copynumber: 4.6 Consensus size: 317
22598196 ATCCCCAGTC
* * * * * *
22598206 TAGGCATACGGAGTTCATTCCCAATCTAAGATCAAATCTGA-TCGAGGGTTGTGGCAGCAAGATC
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGGATC
* * * * * * *
22598270 GACAG--CACATAGGGGGGACTGTGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGTTG
65 AACAGTACGCA-AGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTG
** * ** * *
22598333 AGTGCCTGCACGTCCGTTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
129 AGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCCC
* * * * * ** * * *
22598398 AACTGAATCGAGGGTTGTGGCAGCGGGATCGGTAGCACGCTGAGGGGGATCGGACCAATCCCTGG
193 AGCAGGATCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCTAATCCCTGG
* * * *
22598463 CTTGCGCATTATACCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACT
258 CTTGCGCATTATGCCTCTCCGGCCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACT
* * *
22598523 TAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGATCA
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCA
* *
22598588 ACAGTACGTAAGGGGGGACCGGGCC-AGTCCCCGACTTACGCATTCTGCCTCTTCGATCGGCTGA
66 ACAGTACGCAAGGGGGGACCGGGCCGA-TCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGA
* * *
22598652 GCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGCAGTTCATTCCATGTCTAAGCCCCA
130 GCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGG-AGTTCATTCCATGTCTAAGCCCCA
* * * *
22598717 GCAGGATCGAGGGTTGTGGTAGCAGGACCGACAGCGCGCAGAGGGGG-GCTGGGGTAATCCCTGG
194 GCAGGATCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATC-GGGCTAATCCCTGG
* * * * * * * *
22598781 CTTGCGTATTCTGCCTCTCCAGCCGGTTGATTGCCCACACGCTCGTTTCGTGGGTTGGCT
258 CTTGCGCATTATGCCTCTCCGGCCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACT
* ** * * *
22598841 TAGGCATATGGAGTTCATT-CCATGTCTAAGCCCTAG-TCGGAAC-GAGGGTTACGGTAGCAGGA
1 TAGGCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCGG-ACTGAGGGTTGCGGCAGCAGGA
* * ** * * *
22598903 CCAGCAGCAGGAATGGCAGCACGCAGGGGGGGACAAGGCCGATCCCCGACTTGCGTATTCTTCCT
63 TCA--A-CA-G--T------ACGCAAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCT
* * * *
22598968 CTCC-AGCTGACTGAGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTC
116 CTCCGATC-GGCTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTC
* * *
22599032 CACGTCTAAGCCCCAGCCA-GACCGAGGGTTGTGGCA--ACGACACGACAGCACGCAGAGGGGGA
179 CATGTCTAAGCCCCAG-CAGGATCGAGGGTTGTGGCAGCAGGAC-CGACAGCACGCAGAGGGGGA
* * ** *
22599094 TCGGGTTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGTGCCCGAACGCTCGTTTC
242 TCGGGCTAATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGTGCCCGCACGCTCGTTTC
22599159 GTGGGTTGACT
307 GTGGGTTGACT
* * * * * *
22599170 TAGGCATACGAAGTTCATTTCCAGTATAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCA
* * * * * * *
22599235 ACAGAACCCAAGGGGGGACCGGGCCGGTCCCCGACTTGCGCATTCTACCTCTCCGTTTGGCTGAG
66 ACAGTACGCAAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAG
* * * * **
22599300 CACCCACACACTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCA
131 CACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATA-GGAGTTCATT-CCATGTCTAAGCCCCA
* ** * * * * * ** *
22599363 GACCGGA-CTGAGGGTTGCAGCAGCAGGATCGACAACACGTAG-GGGGGACTAGGTC-GGTCCCC
194 G-CAGGATC-GAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGA-TCGGGCTAATCCCT
* * * ** * * * * * *
22599425 AGCTTTCGCATTCTGCCTCTCCAACCGGCTGAGTGGCCGCATGCCCGTTTCATGGGTTGGCT
256 GGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACT
* * ** * * * ** *
22599487 TAGGAATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CCGGACCGATGGTTGTGGCAGTGGGAC
1 TAGGCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCGGACTGAGGGTTGCGGCAGCAGGAT
* * * * * * * *
22599550 CGATAGCACG-TAGAGGGGGATCGGGTCGATCCCC-AGCTTACGCATTATGCCTCTTCGATCGGC
64 CAACAGTACGCAAG-GGGGGACCGGGCCGATCCCCGA-CTTACGCATTCTGCCTCTCCGATCGGC
* * * * * *
22599613 TTAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
127 TGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATA-GGAGTTCATT-CCATGTCTAAG
22599676 ATCGGACTAG
Statistics
Matches: 941, Mismatches: 171, Indels: 82
0.79 0.14 0.07
Matches are distributed among these distances:
316 11 0.01
317 387 0.41
318 267 0.28
319 9 0.01
320 1 0.00
321 2 0.00
322 1 0.00
324 1 0.00
325 1 0.00
326 2 0.00
327 1 0.00
328 8 0.01
329 125 0.13
330 121 0.13
331 4 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (317 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCA
ACAGTACGCAAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAG
CACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCAGC
AGGATCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCTAATCCCTGGCTT
GCGCATTATGCCTCTCCGGCCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACT
Found at i:22599202 original size:647 final size:647
Alignment explanation
Indices: 22598347--22599536 Score: 1546
Period size: 647 Copynumber: 1.8 Consensus size: 647
22598337 CCTGCACGTC
* ** * * *
22598347 CGTTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTGAATCGAGGG
1 CGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCACGTCTAAGCCCCAACAGAACCGAGGG
* ** ** * **
22598412 TTGTGGCAGCGGGATCGGTAGCACGCTGAGGGGGATCGGACCAATCCCTGGCTTGCGCATTATAC
66 TTGTGGCAACGACATCGACAGCACGCAGAGGGGGATCGGACCAATCCCCAGCTTGCGCATTATAC
* * * * *
22598477 CTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATT
131 CTCTCCGGCCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATT
* * * * * **
22598542 CCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGATCAACAGTACGTAAGGGGGGAC
196 CCCAGTATAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCAACAGAACCCAAGGGGGGAC
* * * * *
22598607 CGGGCCAGTCCCCGACTTACGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCCCATTTCA
261 CGGGCCAGTCCCCGACTTACGCATTCTACCTCTCCGATCGGCTGAGCACCCACACACCCATTTCA
* * * * *
22598672 TGGGTTGGCTTAGGCATAGGCAGTTCATT-CCATGTCTAAGCCCCAG-CAGGA-TCGAGGGTTGT
326 TGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ACCAGACAGGACT-GAGGGTTGC
* * * * * * ** *
22598734 GGTAGCAGGACCGACAGCGCGCAGAGGGGGGCTGGGGT-AATCCCTGGCTTGCGTATTCTGCCTC
388 AGCAGCAGGACCGACAACACGCAG-GGGGGACT-AGGTCAATCCCCAGCTTGCGCATTCTGCCTC
* * * * * * *
22598798 TCCAGCCGGTTGATTGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCA
451 TCCAACCGGCTGAGTGCCCACACGCCCGTTTCATGGGTTGGCTTAGGAATAGGGAGTTCATTCCA
*
22598863 TGTCTAAGCCCTAGTCGGAACGAGGGTTACGGTAGCAGGACCAGCAGCAGGAATGGCAGCACGCA
516 TGTCTAAGCCCTAGCCGGAACGAGGGTTACGGTAGCAGGACCAGCAGCAGGAATGGCAGCACGCA
22598928 GGGGGGGACAAGGCCGATCCCCGACTTGCGTATTCTTCCTCTCCAGCTGACTGAGCACCCGCACA
581 GGGGGGGACAAGGCCGATCCCCGACTTGCGTATTCTTCCTCTCCAGCTGACTGAGCACCCGCACA
22598993 CT
646 CT
* *
22598995 CGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCACGTCTAAGCCCCAGCCAG-ACCGAGG
1 CGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCACGTCTAAGCCCCA-ACAGAACCGAGG
**** *
22599059 GTTGTGGCAACGACA-CGACAGCACGCAGAGGGGGATCGGGTTGATCCCCAGCTTGCGCATTATG
65 GTTGTGGCAACGACATCGACAGCACGCAGAGGGGGATCGGACCAATCCCCAGCTTGCGCATTATA
*
22599123 CCTCTCCGGCCGGCTCAGTGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
130 CCTCTCCGGCCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
* * *
22599188 TTCCAGTATAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACAGAACCCAAGGGGGGA
195 TCCCAGTATAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCAACAGAACCCAAGGGGGGA
* * * * * *
22599253 CCGGGCCGGTCCCCGACTTGCGCATTCTACCTCTCCGTTTGGCTGAGCACCCACACACTCGTTTC
260 CCGGGCCAGTCCCCGACTTACGCATTCTACCTCTCCGATCGGCTGAGCACCCACACACCCATTTC
* *
22599318 ATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAG
325 ATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGACCAGACAGGACTGAGGGTTGCAG
* * ** *
22599383 CAGCAGGATCGACAACACGTAGGGGGGACTAGGTCGGTCCCCAGCTTTCGCATTCTGCCTCTCCA
390 CAGCAGGACCGACAACACGCAGGGGGGACTAGGTCAATCCCCAGCTTGCGCATTCTGCCTCTCCA
* * *
22599448 ACCGGCTGAGTGGCCGCATGCCCGTTTCATGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTC
455 ACCGGCTGAGTGCCCACACGCCCGTTTCATGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTC
* *
22599513 TAAGCCCTAGCCGGACCGATGGTT
520 TAAGCCCTAGCCGGAACGAGGGTT
22599537 GTGGCAGTGG
Statistics
Matches: 455, Mismatches: 82, Indels: 12
0.83 0.15 0.02
Matches are distributed among these distances:
645 3 0.01
646 110 0.24
647 271 0.60
648 69 0.15
649 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (647 bp):
CGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCACGTCTAAGCCCCAACAGAACCGAGGG
TTGTGGCAACGACATCGACAGCACGCAGAGGGGGATCGGACCAATCCCCAGCTTGCGCATTATAC
CTCTCCGGCCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATT
CCCAGTATAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCAACAGAACCCAAGGGGGGAC
CGGGCCAGTCCCCGACTTACGCATTCTACCTCTCCGATCGGCTGAGCACCCACACACCCATTTCA
TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGACCAGACAGGACTGAGGGTTGCAGC
AGCAGGACCGACAACACGCAGGGGGGACTAGGTCAATCCCCAGCTTGCGCATTCTGCCTCTCCAA
CCGGCTGAGTGCCCACACGCCCGTTTCATGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCT
AAGCCCTAGCCGGAACGAGGGTTACGGTAGCAGGACCAGCAGCAGGAATGGCAGCACGCAGGGGG
GGACAAGGCCGATCCCCGACTTGCGTATTCTTCCTCTCCAGCTGACTGAGCACCCGCACACT
Found at i:22599856 original size:26 final size:26
Alignment explanation
Indices: 22599820--22599872 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
22599810 GTTGAATTAG
22599820 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22599846 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22599872 G
1 G
22599873 ATCAAACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22601210 original size:159 final size:159
Alignment explanation
Indices: 22600876--22601553 Score: 556
Period size: 158 Copynumber: 4.3 Consensus size: 159
22600866 GAGTGTCAGG
* * ** *
22600876 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAG-ATCAGATCATA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCCCCAGA-CAGA
** ** * ** * * * * *
22600939 TTGAGGGTTACGGCACCAAGATCT-ACAGCACGCAG-GGGGGACCAGGTCGATCCCCGGCTTGCG
64 CCGAGGGTTGTGGCAGCGGGA-CTGGCAGCACGCAGAGAGGGATCGGGCCGATCCCCGGCTTGCG
* * * ** ** *
22601002 CATTCTACCTCTCCGGTTGGTTGAGTACCCGT
128 CATTATACCTCTTCGGCTGGTACAGCGCCCGC
* * * * *
22601034 ACGCCCGTTTCGTGGGTTGGCTTAGGCAGAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGACAGACC
* *
22601099 GAGGGTTGTGGCAGCGGGACTGGCAACACGCAGAGAGGGA-CTGGGCTGATCCCCGGCTTGCGCA
66 GAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGAGGGATC-GGGCCGATCCCCGGCTTGCGCA
* * * *
22601163 TTATGCCTCTACGGCTGGTACAGTGCCCGA
130 TTATACCTCTTCGGCTGGTACAGCGCCCGC
* ** *
22601193 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGACAG-A
* * ** * *
22601256 CTGAGGGTTATGGCAGTAGGA-TCGACAGCACGCAG-GAGGGATCGGGCCGATCCCCGACTTGCG
64 CCGAGGGTTGTGGCAGCGGGACT-GGCAGCACGCAGAGAGGGATCGGGCCGATCCCCGGCTTGCG
*
22601319 CATTCTACCTCTTCGGCT-G-ACTGAGCGCCCGC
128 CATTATACCTCTTCGGCTGGTAC--AGCGCCCGC
* * *
22601351 ACGAC-CGTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCCA-ACCAG
1 ACG-CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCCAGA-CAG
* * * ** * * *
22601414 ACCGAGGGTTGTGGCAACGGGACCGGTAGCACATAGAGGGGGATCGGGCCGATCCCTGGCTTGCT
63 ACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGAGGGATCGGGCCGATCCCCGGCTTGCG
* * * *
22601479 CATTATGCCTCTTCGACCGGCT-CTGCGCCCGC
128 CATTATACCTCTTCGGCTGG-TACAGCGCCCGC
* * *
22601511 ACGCTCATTTCTTGGGTTGACTTATGCATACGGAGTTCATTCC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
22601554 CAGTCTATGA
Statistics
Matches: 413, Mismatches: 85, Indels: 42
0.76 0.16 0.08
Matches are distributed among these distances:
156 2 0.00
157 9 0.02
158 163 0.39
159 149 0.36
160 88 0.21
161 1 0.00
162 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGACAGACC
GAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGAGGGATCGGGCCGATCCCCGGCTTGCGCAT
TATACCTCTTCGGCTGGTACAGCGCCCGC
Found at i:22601582 original size:318 final size:316
Alignment explanation
Indices: 22600876--22601720 Score: 1005
Period size: 317 Copynumber: 2.7 Consensus size: 316
22600866 GAGTGTCAGG
* * * *
22600876 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCAGATC-ATAT
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-AC
** * * * *
22600940 TGAGGGTTACGGCACCAAGATCTACAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCAT
65 TGAGGGTTACGGCAGTAGGATCGACAGCACGCAGGGGGGA-CAGGCCGATCCCCGACTTGCGCAT
* ** ** * *
22601005 TCTACCTCTCCGGTTGGTTGAGTACCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCAGAGGGAGT
129 TCTACCTCTCCGGCTGACTGAGCGCCCGTACG-CCGTTTCGTGGATTGGCTTAGGCAAAGGGAGT
** * * *
22601070 TCATTCCATGTCTAAG-CCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACTGGCAACACGCAGAG
193 TCATTCCATGTCTAAGCCCCCAACCAGACCGAGGGTTGTGGCAACGGGACCGGCAACACACAGAG
* * * *
22601134 AGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCCTCTACGGCTGGTACAGTGCCCGA
258 AGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTACGACCGGTACAGCGCCCGA
*
22601193 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACT
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACT
* * *
22601258 GAGGGTTATGGCAGTAGGATCGACAGCACGCAGGAGGGATCGGGCCGATCCCCGACTTGCGCATT
66 GAGGGTTACGGCAGTAGGATCGACAGCACGCAGGGGGGA-CAGGCCGATCCCCGACTTGCGCATT
* * *
22601323 CTACCTCTTCGGCTGACTGAGCGCCCGCACGACCGTTTCGTGGATTGGCTTAGGCATAGGGAGTT
130 CTACCTCTCCGGCTGACTGAGCGCCCGTACG-CCGTTTCGTGGATTGGCTTAGGCAAAGGGAGTT
* * * *
22601388 CATTCCATGTCTAAGCCCCCAACCAGACCGAGGGTTGTGGCAACGGGACCGGTAGCACATAGAGG
194 CATTCCATGTCTAAGCCCCCAACCAGACCGAGGGTTGTGGCAACGGGACCGGCAACACACAGAGA
* * * * *
22601453 GGGA-TCGGGCCGATCCCTGGCTTGCTCATTATGCCTCTTCGACCGGCT-CTGCGCCCGC
259 GGGACT-GGGCCGATCCCCGGCTTGCGCATTATGCCTCTACGACCGG-TACAGCGCCCGA
* * * ** *
22601511 ACGCTCATTTCTTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTATGATTGGACCGAACC
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACT
* ** * ** * * *
22601576 GAGGGTTGCGATAGTAGGATCGATAGCACATAGGGGGGACCGGCCAATCCCCGACTTGCGCATTT
66 GAGGGTTACGGCAGTAGGATCGACAGCACGCAGGGGGGACAGGCCGATCCCCGACTTGCGCATTC
* ** * * * * *
22601641 TGCCTCTCCAACCGACTGAGCGCCCGTACGCTCGTTTCGTGGTTTGGCTTAGGTAAACGAAGTTC
131 TACCTCTCCGGCTGACTGAGCGCCCGTACGC-CGTTTCGTGGATTGGCTTAGGCAAAGGGAGTTC
22601706 ATTCCATGTCTAAGC
195 ATTCCATGTCTAAGC
22601721 ATACGGAGTT
Statistics
Matches: 451, Mismatches: 72, Indels: 10
0.85 0.14 0.02
Matches are distributed among these distances:
316 1 0.00
317 274 0.61
318 175 0.39
319 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (316 bp):
ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACT
GAGGGTTACGGCAGTAGGATCGACAGCACGCAGGGGGGACAGGCCGATCCCCGACTTGCGCATTC
TACCTCTCCGGCTGACTGAGCGCCCGTACGCCGTTTCGTGGATTGGCTTAGGCAAAGGGAGTTCA
TTCCATGTCTAAGCCCCCAACCAGACCGAGGGTTGTGGCAACGGGACCGGCAACACACAGAGAGG
GACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTACGACCGGTACAGCGCCCGA
Found at i:22601717 original size:157 final size:158
Alignment explanation
Indices: 22600876--22601719 Score: 573
Period size: 159 Copynumber: 5.3 Consensus size: 158
22600866 GAGTGTCAGG
* * * *
22600876 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCAGATC-ATAT
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-AC
* ** ** * * * ** * * * *
22600940 TGAGGGTTACGGCACCAAGATCTACAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCAT
65 CGAGGGTTGTGGCAGTAGGATCGATAGCACATAGGGGGGATCGGGCCGATCCCCGACTTGCGCAT
* * * *** ** ** *
22601005 TCTACCTCTCCGGTTGGTTGAGTACCCGT
130 TATGCCTCTTCGACCGACTGAGCGCCCGC
* * * * ** * *
22601034 ACGCCCGTTTCGTGGGTTGGCTTAGGCAGAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCAG-A
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAA
** * ** * * *
22601097 CCGAGGGTTGTGGCAGCGGGACTGGCA-A-CACGCAGAGAGGGA-CTGGGCTGATCCCCGGCTTG
64 CCGAGGGTTGTGGCAGTAGGA-TCG-ATAGCACATAG-GGGGGATC-GGGCCGATCCCCGACTTG
* * * * *
22601159 CGCATTATGCCTCTACGGCTGGTAC--AGTGCCCGA
125 CGCATTATGCCTCTTCGAC-CG-ACTGAGCGCCCGC
* *
22601193 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACT
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACC
* * ** *
22601258 GAGGGTTATGGCAGTAGGATCGACAGCACGCAGGAGGGATCGGGCCGATCCCCGACTTGCGCATT
66 GAGGGTTGTGGCAGTAGGATCGATAGCACATAGGGGGGATCGGGCCGATCCCCGACTTGCGCATT
* * * *
22601323 CTACCTCTTCGGCTGACTGAGCGCCCGC
131 ATGCCTCTTCGACCGACTGAGCGCCCGC
* * * **
22601351 ACGAC-CGTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCCA-ACC-
1 ACG-CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG--ATCAGACCG
*** * * * *
22601412 AGACCGAGGGTTGTGGCAACGGGACCGGTAGCACATAGAGGGGGATCGGGCCGATCCCTGGCTTG
62 A-ACCGAGGGTTGTGGCAGTAGGATCGATAGCACATAG-GGGGGATCGGGCCGATCCCCGACTTG
* * **
22601477 CTCATTATGCCTCTTCGACCGGCTCTGCGCCCGC
125 CGCATTATGCCTCTTCGACCGACTGAGCGCCCGC
* * * * **
22601511 ACGCTCATTTCTTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTATGATTGGACCGAACC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACC
* ** * *
22601576 GAGGGTTGCGATAGTAGGATCGATAGCACATAGGGGGGA-CCGGCCAATCCCCGACTTGCGCATT
66 GAGGGTTGTGGCAGTAGGATCGATAGCACATAGGGGGGATCGGGCCGATCCCCGACTTGCGCATT
* * * *
22601640 TTGCCTCTCCAACCGACTGAGCGCCCGT
131 ATGCCTCTTCGACCGACTGAGCGCCCGC
* * * * *
22601668 ACGCTCGTTTCGTGGTTTGGCTTAGGTAAACGAAGTTCATT-CCATGTCTAAG
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
22601720 CATACGGAGT
Statistics
Matches: 537, Mismatches: 122, Indels: 55
0.75 0.17 0.08
Matches are distributed among these distances:
156 5 0.01
157 88 0.16
158 167 0.31
159 178 0.33
160 96 0.18
161 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACC
GAGGGTTGTGGCAGTAGGATCGATAGCACATAGGGGGGATCGGGCCGATCCCCGACTTGCGCATT
ATGCCTCTTCGACCGACTGAGCGCCCGC
Found at i:22602453 original size:26 final size:24
Alignment explanation
Indices: 22602424--22602474 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 24
22602414 AGGCATATGA
22602424 AGTTCATCCCCAGTCTAAGCATACAG
1 AGTTCATCCCCAGTCTAA-CAT-CAG
*
22602450 AGTTCATTCCCAGTCTAACATCAG
1 AGTTCATCCCCAGTCTAACATCAG
22602474 A
1 A
22602475 TCAGACCGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 4 0.17
25 3 0.12
26 17 0.71
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (24 bp):
AGTTCATCCCCAGTCTAACATCAG
Found at i:22602730 original size:158 final size:157
Alignment explanation
Indices: 22602449--22602945 Score: 525
Period size: 158 Copynumber: 3.1 Consensus size: 157
22602439 TAAGCATACA
* * ** *
22602449 GAGTTCATTCCCA-GTCTAA-CATCAGATCAGACCGAGGGTTGTGACTGTAGGATCGACAGCACG
1 GAGTTCATT-CCATGTCTAAGCCTCAG-TCAGACCGAGGGTTGTGGCTGCGGGA-CGGCAGCACG
* * * * ** * * *
22602512 CAGGGGGGATCGGGCCGATCCCTGGCTTGCGTATTCGGCCTCTCCGGTCGGCTGAGCGCCCGTAC
63 CAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGACTGAGCGCCCGTAT
* *
22602577 ACCCGTTTCGTGGGTTGGCTTAGGCATAGG
128 GCCCGTTTCGTGGGTTGGCTTAGGCATAAG
* * * *
22602607 GACTTCATTCCATTTC-AAGCCTCAGTCAAACCGAGGGTTGTGGCTGCGGGACGGGCAGCACACA
1 GAGTTCATTCCATGTCTAAGCCTCAGTCAGACCGAGGGTTGTGGCTGCGGGAC-GGCAGCACGCA
* * * * *
22602671 GTGGGGGACCGGGCCAATCCCCGTCTTACGCATTATGCCTCTCCGATCGACTGAACGCCCGCATG
65 G-GGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGACTGAGCGCCCGTATG
* * *
22602736 GCCATTTCGTGGGTTGGGTTAGGCATAAG
129 CCCGTTTCGTGGGTTGGCTTAGGCATAAG
* * * * *
22602765 GAGTTCATTTCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCA
1 GAGTTCATTCCATGTCTAAGCCTCAGTCAGACCGAGGGTTGTGGCTGCGGGA-CGGCAGCACGCA
* * *
22602830 GAGGGGGATCGGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATC-AGCTCAGCGCCCGTA
65 G-GGGGGA-CCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGA-CTGAGCGCCCGTA
* * * *
22602894 TGCTCGTTTCATGGGTTGACTTAGGCATACG
127 TGCCCGTTTCGTGGGTTGGCTTAGGCATAAG
22602925 GAGTTCATTCCATGTCTAAGC
1 GAGTTCATTCCATGTCTAAGC
22602946 ATATAGAGTT
Statistics
Matches: 278, Mismatches: 53, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
156 1 0.00
157 37 0.13
158 102 0.37
159 48 0.17
160 90 0.32
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
GAGTTCATTCCATGTCTAAGCCTCAGTCAGACCGAGGGTTGTGGCTGCGGGACGGCAGCACGCAG
GGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGACTGAGCGCCCGTATGCC
CGTTTCGTGGGTTGGCTTAGGCATAAG
Found at i:22602920 original size:160 final size:156
Alignment explanation
Indices: 22602476--22602945 Score: 519
Period size: 160 Copynumber: 3.0 Consensus size: 156
22602466 AACATCAGAT
* ** * * * *
22602476 CAGACCGAGGGTTGTGACTGTAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTG
1 CAGACCGAGGGTTGTGGCTGCGGGACCGGCAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTG
* ** * ** *
22602541 CGTATTCGGCCTCTCCGGTCGGCTGAGCGCCCGTACACCCGTTTCGTGGGTTGGCTTAGGCATAG
66 CGCATTATGCCTCTCCGATC-GCTGAGCGCCCGTA-TGCCGTTTCGTGGGTTGGCTTAGGCATAA
* * * *
22602606 GGACTTCATTCCATTTC-AAGCCTCAGT
129 GGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * * *
22602633 CAAACCGAGGGTTGTGGCTGCGGGACGGGCAGCACACAGTGGGGGACCGGGCCAATCCCCGTCTT
1 CAGACCGAGGGTTGTGGCTGCGGGACCGGCAGCACGCAG-GGGGGATCGGGCCGATCCCCGACTT
* * * * *
22602698 ACGCATTATGCCTCTCCGATCGACTGAACGCCCGCATGGCCATTTCGTGGGTTGGGTTAGGCATA
65 GCGCATTATGCCTCTCCGATCG-CTGAGCGCCCGTAT-GCCGTTTCGTGGGTTGGCTTAGGCATA
*
22602763 AGGAGTTCATTTCATGTCTAAGCCCCAGC
128 AGGAGTTCATTCCATGTCTAAGCCCCAGC
* * *
22602792 CGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGATCGGGGCTGATCCCCGACT
1 CAGACCGAGGGTTGTGGCTGCGGGACCGGCAGCACGCAG-GGGGGATC-GGGCCGATCCCCGACT
* * *
22602857 TGCGCATTATGCCTCTCCGATCAGCTCAGCGCCCGTATGCTCGTTTCATGGGTTGACTTAGGCAT
64 TGCGCATTATGCCTCTCCGATC-GCTGAGCGCCCGTATGC-CGTTTCGTGGGTTGGCTTAGGCAT
*
22602922 ACGGAGTTCATTCCATGTCTAAGC
127 AAGGAGTTCATTCCATGTCTAAGC
22602946 ATATAGAGTT
Statistics
Matches: 257, Mismatches: 49, Indels: 11
0.81 0.15 0.03
Matches are distributed among these distances:
157 32 0.12
158 86 0.33
159 51 0.20
160 87 0.34
161 1 0.00
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (156 bp):
CAGACCGAGGGTTGTGGCTGCGGGACCGGCAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTG
CGCATTATGCCTCTCCGATCGCTGAGCGCCCGTATGCCGTTTCGTGGGTTGGCTTAGGCATAAGG
AGTTCATTCCATGTCTAAGCCCCAGC
Found at i:22602948 original size:26 final size:26
Alignment explanation
Indices: 22602918--22602970 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22602908 GTTGACTTAG
*
22602918 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
22602944 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22602970 G
1 G
22602971 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22603836 original size:26 final size:26
Alignment explanation
Indices: 22603786--22603838 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22603776 GTTGGCCAAG
*
22603786 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
22603812 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
22603838 G
1 G
22603839 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:22604546 original size:26 final size:26
Alignment explanation
Indices: 22604510--22604562 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22604500 GTTGACTTAG
*
22604510 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
22604536 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22604562 G
1 G
22604563 ATCGGATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22604888 original size:26 final size:26
Alignment explanation
Indices: 22604852--22604904 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22604842 GTTGACTTAG
*
22604852 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
22604878 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22604904 G
1 G
22604905 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22611199 original size:26 final size:26
Alignment explanation
Indices: 22611152--22611201 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
22611142 GACTTTGGCA
* *
22611152 TACGGAGTTCATCCTTAGTCTAAGCT
1 TACGGAGTTCATCCTCAATCTAAGCT
22611178 TACGGAGTTCATTCC-CAATCTAAG
1 TACGGAGTTCA-TCCTCAATCTAAG
22611202 ATCAGACCGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATCCTCAATCTAAGCT
Found at i:22611869 original size:26 final size:26
Alignment explanation
Indices: 22611833--22611885 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22611823 GTTGACTTAG
22611833 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22611859 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22611885 G
1 G
22611886 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22612257 original size:159 final size:156
Alignment explanation
Indices: 22611859--22612361 Score: 471
Period size: 159 Copynumber: 3.2 Consensus size: 156
22611849 CCCAGTCTAA
* * *
22611859 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGAACTGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCA-AACGGACTGAGGGTTGTGGCAGCAGGATCGAG
* * * ** * *
22611923 AGCACGC-AGGGGGAACCAGGTCGATCCCCGTCTTATGCATTCTACCTCTTCGGCCAGCTGAGCG
64 AGCAAGCAAGGGGG-ACCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCGGCGA-CTGAGCG
* *
22611987 CTCGTATGCCCGTTTCGTGGGTTGGCTTAG
127 CTCGTACGCTCGTTTCGTGGGTTGGCTTAG
* ** ** * *
22612017 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATTGAGGGTTGTGGCAGCGGGATCG-GC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAAACGGACTGAGGGTTGTGGCAGCAGGATCGAG-
* * * * *
22612081 AGCACA-CAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGACTCAGC
64 AGCA-AGCA-AGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCGG-CGACTGAGC
* * *
22612145 GCCCGAACGCTCGTTTCGTGGGGTTGACTTAG
126 GCTCGTACGCTCGTTTCGT-GGGTTGGCTTAG
* * *
22612177 GCATATGGAGTTCATTCCCA-GTCTAAGATCGAAACGGACCGAGGGTTGCT-GTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATC-AAACGGACTGAGGGTTG-TGGCAGCAGGATCGA
* * * * *
22612240 GAGCAAGCAAGGAGGACCGAG-CCAGTCCCCGACTTGCGCATTCTACCTCTCCGACCGGCTGAGC
63 GAGCAAGCAAGGGGGACCGGGTCGA-TCCCCGACTTGCGCATTCTACCTCTCCG-GCGACTGAGC
* * **
22612304 GGTCGTACGCTCATTTCGTACGTTGGCTTAG
126 GCTCGTACGCTCGTTTCGTGGGTTGGCTTAG
22612335 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
22612362 CATACGGAGT
Statistics
Matches: 277, Mismatches: 52, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
157 6 0.02
158 85 0.31
159 111 0.40
160 70 0.25
161 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACGGACTGAGGGTTGTGGCAGCAGGATCGAGAG
CAAGCAAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCGGCGACTGAGCGCTCG
TACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:22612364 original size:26 final size:26
Alignment explanation
Indices: 22612335--22612387 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22612325 GTTGGCTTAG
22612335 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
22612361 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
22612387 G
1 G
22612388 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:22612560 original size:26 final size:26
Alignment explanation
Indices: 22612530--22612582 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22612520 GTTGACTTAG
*
22612530 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
22612556 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
22612582 G
1 G
22612583 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:22613627 original size:26 final size:26
Alignment explanation
Indices: 22613591--22613643 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22613581 GTTGACTTAG
22613591 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
22613617 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
22613643 G
1 G
22613644 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:22614140 original size:26 final size:26
Alignment explanation
Indices: 22614090--22614143 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
22614080 GTTGGCTTAG
*
22614090 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
22614116 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
22614142 GC
1 GC
22614144 TCAGACTGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:22614499 original size:26 final size:26
Alignment explanation
Indices: 22614469--22614521 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22614459 GTTGACTTAG
22614469 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
* *
22614495 GCATATGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22614521 G
1 G
22614522 ATCGAAACGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22614794 original size:155 final size:156
Alignment explanation
Indices: 22614621--22614918 Score: 354
Period size: 156 Copynumber: 1.9 Consensus size: 156
22614611 ACCGACTGAG
* ** *
22614621 CACCCGCACGCCCTTTTCGTGGGTTCAC-T-T-CATAGGGAGTTCATT-CCATGTCTAAGCTCTA
1 CACCCGCACGCCCATTTCGTGGGTTCACTTATGCATACAGAGTTCATTCCCA-GTCTAAGATC-A
* * * ** * **
22614682 G-CCAGACTGAGGGTTGTGGCAGCAGGACCGGTAGCACGCAGAGGGGGACCGGGCCGATCCTCGG
64 GACCAGACCGA-GGTTGCGACAGCAGGACCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCAA
22614746 CTTGCGCATTATGCCTCTTTGGTCGGCTCA
127 CTTGCGCATTATGCCTCTTTGGTCGGCTCA
* * *
22614776 CACCCGCACGCTCATTTCGTTGGTTCACTTATGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
1 CACCCGCACGCCCATTTCGTGGGTTCACTTATGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
* * *
22614841 CTAGACCGAGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACTGGGCCGATCCCCAACTTG
66 CCAGACCGAGGTTGCGACAGCAGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCCAACTTG
*
22614906 CGCATTCTGCCTC
131 CGCATTATGCCTC
22614919 CCCGACCGGT
Statistics
Matches: 119, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
155 25 0.21
156 35 0.29
157 27 0.23
158 29 0.24
159 3 0.03
ACGTcount: A:0.19, C:0.30, G:0.28, T:0.23
Consensus pattern (156 bp):
CACCCGCACGCCCATTTCGTGGGTTCACTTATGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
CCAGACCGAGGTTGCGACAGCAGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCCAACTTG
CGCATTATGCCTCTTTGGTCGGCTCA
Found at i:22617919 original size:26 final size:26
Alignment explanation
Indices: 22617889--22617941 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22617879 GTTGACTTAG
22617889 GCATATGGAGTTCATCCCCAATCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
*
22617915 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
22617941 G
1 G
22617942 ATCAGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAATCTAA
Found at i:22618388 original size:158 final size:156
Alignment explanation
Indices: 22617915--22618406 Score: 524
Period size: 158 Copynumber: 3.1 Consensus size: 156
22617905 CCCAATCTAA
* * * * * *
22617915 GCATATGGAGTTCATTCCCAATCTAAGATCAGACTGAACCGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCG-TAGCAGGATCGACA
* * * *
22617980 GCACGCAGGGGGGACC-GGGTCGATCCCCGGCTTACGTATTCTGCCTCTACGGTCGGCTCAGCG-
65 GCACGCAGGGGGGACCAGGCT-GATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCGG-TTAGCGC
* * *
22618043 CCGCACACCCATTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * *
22618072 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTC-GGACCAAGGGTTGTGGTAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGACCAAGGGTTG-CGTAGCAGGATCGA
* * * * ** *
22618135 CAGCATGCAGAGGGGGACCAGGCCGATCCCCGACTTGCGTATTATGCCTCTCCGACCGACTTAGC
63 CAGCACGCAG-GGGGGACCAGGCTGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCG-GTTAGC
* * *
22618200 ACCTGCACGCTCGTTTCGTGGGTTGACTTAG
126 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** **
22618231 GCATACAAAGTTCATTCCCAGTCTAAGATTGGACTGGACCAAGGGTTGCAGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGC-GTAGCAGGATCGACA
* *
22618296 GCACGCAGGGGGGACCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAACGCC
65 GCACGCAGGGGGGACCAGGCTGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCGGTT-AGCGCC
* *
22618361 CGTACGCTTGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
22618389 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
22618407 ACGTATAAGC
Statistics
Matches: 268, Mismatches: 56, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
156 3 0.01
157 51 0.19
158 132 0.49
159 79 0.29
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGTAGCAGGATCGACAG
CACGCAGGGGGGACCAGGCTGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCGGTTAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:22620855 original size:26 final size:26
Alignment explanation
Indices: 22620807--22620859 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22620797 CTTGAATTAG
*
22620807 GCATACGGAGTTCATCTCTAGTCTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
*
22620833 GCATATGGAGTTCAT-TCCCAGTCTAA
1 GCATACGGAGTTCATCT-CCAGTCTAA
22620859 G
1 G
22620860 ATTGGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAGTCTAA
Found at i:22622700 original size:159 final size:157
Alignment explanation
Indices: 22622344--22622770 Score: 455
Period size: 159 Copynumber: 2.7 Consensus size: 157
22622334 ACCGACTGGA
* * * * * *
22622344 CTCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTTGTCGGTTGACTTAGGCATACGGAGTTCATT
1 CTCTCTGGTCGACTGAGCACCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATT
** * * * ** * *
22622409 CCCA-GTCTAAGATCAAACCAAATCGAGGGTTGCT-ACAGCAGGATCGGCAGCACACAGGGGGGA
66 -CCATGTCTAAGCCCCAGCCAACT-GAGGGTTG-TGGTAGCAGGACCGACAGCACACAGGGGGGA
* *
22622472 TCGGGCCGATCCTCGGCTTACACATTCTAC
128 CCGAGCCGATCCTCGGCTTACACATTCTAC
* * * * * *
22622502 CTCTCCGATCGGCTGAG-AGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
1 CTCTCTGGTCGACTGAGCA-CCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCAT
* **
22622566 TCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGTAGCGGGACCGACAGCATGCAGAGGGGGA
65 TCCATGTCTAAGCCCCAGCCA-ACTGAGGGTTGTGGTAGCAGGACCGACAGCACACAG-GGGGGA
* * *
22622631 CCGAGCTGATCCTCGGCTTACGCATTCTGC
128 CCGAGCCGATCCTCGGCTTACACATTCTAC
*
22622661 CTCTCTGGTCGACTGAGCACCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCATT
1 CTCTCTGGTCGACTGAGCACCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATT
* ** * *
22622726 TCATGTCTAAGCCCCAGCCAAACCCAGGGTTATGGTAGTAGGACC
66 CCATGTCTAAGCCCCAGCC-AACTGAGGGTTGTGGTAGCAGGACC
22622771 AGCAGCGAGA
Statistics
Matches: 220, Mismatches: 42, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
157 4 0.02
158 88 0.40
159 126 0.57
160 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (157 bp):
CTCTCTGGTCGACTGAGCACCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATT
CCATGTCTAAGCCCCAGCCAACTGAGGGTTGTGGTAGCAGGACCGACAGCACACAGGGGGGACCG
AGCCGATCCTCGGCTTACACATTCTAC
Found at i:22623944 original size:26 final size:26
Alignment explanation
Indices: 22623894--22623946 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22623884 GTTGGCTTAG
*
22623894 GCATACGGAGTTCATTCCTTATCTAA
1 GCATACGGAGTTCATTCCTCATCTAA
22623920 GCATACGGAGTTCATTCC-CAGTCTAA
1 GCATACGGAGTTCATTCCTCA-TCTAA
22623946 G
1 G
22623947 AGTTTGAGCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTCATCTAA
Found at i:22625405 original size:171 final size:171
Alignment explanation
Indices: 22625093--22625417 Score: 383
Period size: 171 Copynumber: 1.9 Consensus size: 171
22625083 TCCGACTGGT
* * *
22625093 TGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
1 TGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAC
* * * *
22625158 CAGATCGGATCGAGGGTTACGATAGCAGGACCAGTAGCAGGATCGATAGCGCGCAGGAAGGGACC
66 CAGATCGGACCGAGGGTTACGACAGCAGGACCAGTAGCAGAATCGATAGCACGCAGGAAGGGACC
*
22625223 GGGTCGATCCCCGACTTGTGCATTCTGCCTCTTCTATCGGC
131 GGGTCGATCCCCGACTCGTGCATTCTGCCTCTTCTATCGGC
** *
22625264 TGAGCACCCGCACGCTCGTTTTGTGTGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGC
1 TGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-
* * * * *
22625328 CCCA-ATCGGACCGAGGGTTATGGCAGCAGGACTGGCAGT-G-A-AATCGGTAGCACGCA-GAGG
64 ACCAGATCGGACCGAGGGTTACGACAGCAGGAC---CAGTAGCAGAATCGATAGCACGCAGGAAG
* * *
22625388 GCGACTGGGTTGATCCCCGGCTCGTGCATT
126 G-GACCGGGTCGATCCCCGACTCGTGCATT
22625418 ATACCTCTCC
Statistics
Matches: 129, Mismatches: 19, Indels: 12
0.81 0.12 0.08
Matches are distributed among these distances:
170 7 0.05
171 114 0.88
172 3 0.02
173 1 0.01
174 4 0.03
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (171 bp):
TGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAC
CAGATCGGACCGAGGGTTACGACAGCAGGACCAGTAGCAGAATCGATAGCACGCAGGAAGGGACC
GGGTCGATCCCCGACTCGTGCATTCTGCCTCTTCTATCGGC
Found at i:22625818 original size:159 final size:160
Alignment explanation
Indices: 22625650--22626014 Score: 393
Period size: 159 Copynumber: 2.3 Consensus size: 160
22625640 CGCACACCAG
* * *
22625650 TTTCGTGGGTTTGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGT
1 TTTCATGGGTTTGCTGAGGCATAGAGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGT
* * * * * *
22625714 TGTGGCAGCGGGATCGACAGCATGCA-GAGGGGGATCGGGCCGATCCCCGACTTGCCTATTATGC
66 TATGGCAGCAGGATCGACAACACGCAGGAAGGGG-TCGGGCCGATCCCCGACTTGCCTATTATAC
22625778 CTCTTCGATCGACTCAGCGCCCGAACGCTCA
130 CTCTTCGATCGACTCAGCGCCCGAACGCTCA
* * * *
22625809 TTTCATGGG-TTGACTTAGGCATACATAGTTCATTCC-TAGTCTAAG-ATCAGACCAGACCGAGG
1 TTTCATGGGTTTG-CTGAGGCATAGAGAGTTCATTCCAT-GTCTAAGCACCAGACCAGACCGAGG
* * * * * *
22625871 GTTATGGTAGTAGGATCGACAACACGCAGGAAGGGGTCGGGCCGATCCCCGGCTTTCGTATTCTA
64 GTTATGGCAGCAGGATCGACAACACGCAGGAAGGGGTCGGGCCGATCCCCGACTTGCCTATTATA
* * * * * *
22625936 CCTTTTCGATCGGCTGAGCGCCTGCACGCTCG
129 CCTCTTCGATCGACTCAGCGCCCGAACGCTCA
* *
22625968 TTTCATGGGTTGGCTTG-GGCAT-GCAGAGTTCATTCCATGTATAAGCA
1 TTTCATGGGTTTGC-TGAGGCATAG-AGAGTTCATTCCATGTCTAAGCA
22626015 TACGAAGTTC
Statistics
Matches: 167, Mismatches: 30, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
158 7 0.04
159 149 0.89
160 11 0.07
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.25
Consensus pattern (160 bp):
TTTCATGGGTTTGCTGAGGCATAGAGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGT
TATGGCAGCAGGATCGACAACACGCAGGAAGGGGTCGGGCCGATCCCCGACTTGCCTATTATACC
TCTTCGATCGACTCAGCGCCCGAACGCTCA
Found at i:22626555 original size:26 final size:26
Alignment explanation
Indices: 22626525--22626576 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22626515 GTTGGCTTAG
*
22626525 GCATACTGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22626551 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22626577 AATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22627651 original size:159 final size:158
Alignment explanation
Indices: 22627298--22627823 Score: 469
Period size: 158 Copynumber: 3.3 Consensus size: 158
22627288 GCACACAGAG
** * * * * ** **
22627298 TTCATTCCCAGTCTAAGATC-GGCCTGGACTGAGGGTTGCGACAGTAGGATTGGTAGCACGCAGA
1 TTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGA
* * * *
22627362 -GGGGACCAGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGACC-AGCTAAGTGCCTGCACGC
65 GGGGGACCAGGTCGATCCCTCGCTTGCGCATTCTGCCTCTCCGACCGA-CTAAGCGCCCGCACGC
* * *
22627425 -CTGTTTCCTGGGTTGGCTTAGGCATAGCGAG
129 TC-ATTTCGTGGGTTGGCTTAGGCATA-CGAA
* ** * *
22627456 TTCATT-CCATGTGTAAGCCCTAG-TCGGACCTAGGGTTATGGCAGCAGGACCGACAGCACGCAG
1 TTCATTCCCA-GTCTAAGATC-AGATCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAG
** * * * *
22627519 AGGGGGACCAGACCGATCCCTTGCTTGCGCATTATGCCTCTCCGACCGACTCAGCACCCGCACGC
64 AGGGGGACCAGGTCGATCCCTCGCTTGCGCATTCTGCCTCTCCGACCGACTAAGCGCCCGCACGC
* *
22627584 TCATTTCGTGGGTTGACTTAGGCATACGTAT
129 TCATTTCGTGGGTTGGCTTAGGCATACG-AA
* * * *
22627615 TTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGGGGTAGTAGGATCGACAGCAC-CTAG-
1 TTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGC-AGA
* * * * ** *
22627678 GGGGGATCGGGTCGAT-CCTCGACTTGCGCATTCTGTCTCTCCGACCGACTGAGCGCCCATACAC
65 GGGGGACCAGGTCGATCCCTCG-CTTGCGCATTCTGCCTCTCCGACCGACTAAGCGCCCGCACGC
*
22627742 TCATTTTGTGGGTTGGCTTAGGCATACGGAA
129 TCATTTCGTGGGTTGGCTTAGGCATAC-GAA
* * * *
22627773 TTCATTCCCAATCTAAGAT-AGGACCAGACTGAGGGTTGTGGCAGCAGGACC
1 TTCATTCCCAGTCTAAGATCA-GATCGGACCGAGGGTTGTGGCAGCAGGACC
22627824 AGTAGCAGGA
Statistics
Matches: 296, Mismatches: 59, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
157 8 0.03
158 161 0.54
159 121 0.41
160 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
TTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAG
GGGGACCAGGTCGATCCCTCGCTTGCGCATTCTGCCTCTCCGACCGACTAAGCGCCCGCACGCTC
ATTTCGTGGGTTGGCTTAGGCATACGAA
Found at i:22628165 original size:26 final size:26
Alignment explanation
Indices: 22628117--22628169 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22628107 GTTGACTTAG
*
22628117 GCATACGGAGTTCATCCTTAGTCTAA
1 GCATACGGAGTTCATCCTCAGTCTAA
22628143 GCATACGGAGTTCATTCC-CAGTCTAA
1 GCATACGGAGTTCA-TCCTCAGTCTAA
22628169 G
1 G
22628170 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAGTCTAA
Found at i:22628507 original size:159 final size:158
Alignment explanation
Indices: 22628145--22628515 Score: 404
Period size: 159 Copynumber: 2.3 Consensus size: 158
22628135 TAGTCTAAGC
*
22628145 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGC
* * ***
22628210 ATGCAGGGGGGACCGAGCCGATCCACGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGTTTG
66 ATGCAAGGGGGACCGAGCCGATCCACGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCG
* * * * *
22628275 CACGCCCGTTTCATGGGTTGGCTTAGGC
131 AACGCCCATTTCACGGGTTGACTTAGGA
* * ** * ** * *
22628303 ATAGGGAGTTTATT-CCATGTCTAAGCCCCAG-TCAGATTGAGGGTTGTGGCATCGGGATCGACA
1 ATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * * *
22628366 GCATGCAAAGGGGGATCGGGCCGATCCCCGGCTTGCGTATTATGCCTTTCCGTCTGGCTTAGCGC
64 GCATGC-AAGGGGGACCGAGCCGATCCACGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGC
* *
22628431 CCGAACGCTCATTTCGCGGGTTGACTTAGGA
128 CCGAACGCCCATTTCACGGGTTGACTTAGGA
* * *
22628462 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGTGGCAGCA
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCA
22628516 CGTAGGGGGG
Statistics
Matches: 166, Mismatches: 42, Indels: 9
0.76 0.19 0.04
Matches are distributed among these distances:
157 3 0.02
158 53 0.32
159 107 0.64
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (158 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGC
ATGCAAGGGGGACCGAGCCGATCCACGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCG
AACGCCCATTTCACGGGTTGACTTAGGA
Found at i:22629113 original size:26 final size:26
Alignment explanation
Indices: 22629083--22629135 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22629073 GTTGACTTAG
*
22629083 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
22629109 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22629135 G
1 G
22629136 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22629243 original size:26 final size:26
Alignment explanation
Indices: 22629213--22629265 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22629203 GTTGGCTTAG
22629213 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
*
22629239 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
22629265 G
1 G
22629266 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:22629296 original size:130 final size:130
Alignment explanation
Indices: 22629063--22629297 Score: 348
Period size: 130 Copynumber: 1.8 Consensus size: 130
22629053 CCCGTACGCT
* *
22629063 CGTTTCATGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCTAAGCATACGGAGTTTATTCCC
1 CGTTTCATGGGTTGACTTAGGCATAGAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
* *
22629128 AGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATCGACAGTATGCAGGGGGACCGTGC
66 AGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGTATGCAGGGGGACCGTGC
* *
22629193 CGTTTCATGGGTTGGCTTAGGCATACGA-AGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTC
1 CGTTTCATGGGTTGACTTAGGCATA-GAGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTC
* * **
22629256 CTAGTCTAAGATCAGACTAGACCGAGGGTTGTGGCAGCAGGA
64 CCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGA
22629298 CCAGCAGCAA
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
129 3 0.03
130 89 0.96
131 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (130 bp):
CGTTTCATGGGTTGACTTAGGCATAGAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
AGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGTATGCAGGGGGACCGTGC
Found at i:22629439 original size:26 final size:26
Alignment explanation
Indices: 22629410--22629462 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22629400 GTTGACTTAG
22629410 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22629436 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22629462 G
1 G
22629463 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22629902 original size:158 final size:157
Alignment explanation
Indices: 22629436--22629928 Score: 476
Period size: 158 Copynumber: 3.1 Consensus size: 157
22629426 CCATGTCTAA
* *
22629436 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCGAGGGTTGCGATAGTAAGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGCGATAGTAGGATCGAC
* * ** *
22629500 AGCATGCAGGGGGGACCGGGTCTA-TCCCCGACTTACGCATTCTGCCTCTCCTACCGAATAAGCC
65 AGCACGCAGGGGGGACCGGGTC-AGTCCCCGACTTGCGCATTCTGCCTCTCC-ACCGGCTAAGCA
* *
22629564 CCCACACGCCCATTTCATGGGTTGGCTTAG
128 CCCGCACGCTCATTTCATGGGTTGGCTTAG
** * ** * * ** * *
22629594 GCATAGGGAGTTTATT-CCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGCACT-GAGATGG
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCGATAGTAG-GATCG
* * * * * * * *
22629656 ACAGCACCCAGAAGGGGACCGAGTC-GATCCCCGGCTTGCGCATTATGCCTCTCCCTCCAGCTTA
63 ACAGCACGCAG-GGGGGACCGGGTCAG-TCCCCGACTTGCGCATTCTGCCTCT-CCACCGGCTAA
* ** **
22629720 GCACCCGAACGCTCATTTTGTGGGTTAACTTAG
125 GCACCCGCACGCTCATTTCATGGGTTGGCTTAG
* * *
22629753 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGGTTGCGATAGTAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGATAGTAGGATCGACA
* * ** * *
22629818 GCACGTAGGGGGGATCGGGTCAGTCCCCCCCTTGCGCATTCTGCCTTTCCAGCCGGCTGAGCACC
66 GCACGCAGGGGGGACCGGGTCAGTCCCCGACTTGCGCATTCTGCCTCTCCA-CCGGCTAAGCACC
22629883 CGCACGCTCATTTCATGGGTTGGCTTAG
130 CGCACGCTCATTTCATGGGTTGGCTTAG
22629911 GCATACAGAGTTCATTCC
1 GCATACAGAGTTCATTCC
22629929 ATGTCTACGC
Statistics
Matches: 260, Mismatches: 62, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
157 5 0.02
158 134 0.52
159 115 0.44
160 6 0.02
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGATAGTAGGATCGACA
GCACGCAGGGGGGACCGGGTCAGTCCCCGACTTGCGCATTCTGCCTCTCCACCGGCTAAGCACCC
GCACGCTCATTTCATGGGTTGGCTTAG
Found at i:22630444 original size:26 final size:26
Alignment explanation
Indices: 22630414--22630466 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22630404 GTTGACTTAG
*
22630414 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
22630440 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
22630466 G
1 G
22630467 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:22632362 original size:159 final size:157
Alignment explanation
Indices: 22632121--22632568 Score: 488
Period size: 159 Copynumber: 2.8 Consensus size: 157
22632111 TTGCGGCAGT
* * * * * * * * * ** *
22632121 AGGATCGACAGCACGCAGGGGGGACCGGGCCAATCCCCGACTTACGCATTCTGTCTCTCCGGCCG
1 AGGACCGACAACACGCAGGAGGGATCGGGTCGATCCCCGGCTTGCGCATTATACCTCCCCGGCC-
*
22632186 GCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCC-ATGTCTAA
65 GCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTA-GTCTAA
* *
22632250 -ACCCCAGCGGGACCGAGGGTTGTGGTAGC
129 GACCACAGC-GGACCGAGGGTTATGGTAGC
*
22632279 GGGACC-AGCAACACGCAGAGAGGGATCGGGTCGATCCCCGGCTTGCGCATTATACCTCCCCGGC
1 AGGACCGA-CAACACGCAG-GAGGGATCGGGTCGATCCCCGGCTTGCGCATTATACCTCCCCGGC
* * *
22632343 CAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTA
64 C-GCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTA
* * * *
22632408 AGATCAGATCGGACTGAGGGTTATGGTAGC
128 AGACCACAGCGGACCGAGGGTTATGGTAGC
* * * * * * * * *
22632438 AGGATCGACAGCACGTAGGGGGGATCGGGTCGGTCCCCGGCTTGGGCATTCTGCCTCTCCGGCCG
1 AGGACCGACAACACGCAGGAGGGATCGGGTCGATCCCCGGCTTGCGCATTATACCTCCCCGGCCG
* * * *
22632503 ACTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAG
66 -CTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG
22632568 A
130 A
22632569 TCGGACTGGA
Statistics
Matches: 243, Mismatches: 41, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
157 2 0.01
158 111 0.46
159 124 0.51
160 6 0.02
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (157 bp):
AGGACCGACAACACGCAGGAGGGATCGGGTCGATCCCCGGCTTGCGCATTATACCTCCCCGGCCG
CTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
CCACAGCGGACCGAGGGTTATGGTAGC
Found at i:22632540 original size:158 final size:158
Alignment explanation
Indices: 22632074--22632596 Score: 590
Period size: 158 Copynumber: 3.3 Consensus size: 158
22632064 AAGCAAATAA
* * * * *
22632074 AGTTCATTCCCAAACTAAGATCAGACTGGACTGAGGGTTGCGGCAGTAGGATCGACAGCACGCAG
1 AGTTCATTCCCAATCTAAGATCAGACGGGACTGAGGGTTGTGGTAGCAGGATCGACAGCACGCAG
* * * * * * *
22632139 GGGGGACCGGGCCAATCCCCGACTTACGCATTCTGTCTCTCCGGCCGGCTGAGCACCCGCACGCT
66 GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCACGCT
*
22632204 CGTTTCATGGGTTGGCTTAGGCATAGGG
131 CGTTTCATGGGTTGGCTTAGGCATACGG
* * * * * *
22632232 AGTTCATT-CCATGTCTAA-ACCCCAG-CGGGACCGAGGGTTGTGGTAGCGGGA-CCAGCAACAC
1 AGTTCATTCCCA-ATCTAAGA--TCAGACGGGACTGAGGGTTGTGGTAGCAGGATCGA-CAGCAC
* * * * * *
22632293 GCAGAGAGGGATCGGGTCGATCCCCGGCTTGCGCATTATACCTCCCCGGCC-AGCTCAGCGCCCG
62 GCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGA-CTGAGCACCCG
*
22632357 CACGCTCGTTTCATGGGTTGACTTAGGCATACGG
125 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
* * * *
22632391 AGTTCATTCCTAGTCTAAGATCAGATC-GGACTGAGGGTTATGGTAGCAGGATCGACAGCACGTA
1 AGTTCATTCCCAATCTAAGATCAGA-CGGGACTGAGGGTTGTGGTAGCAGGATCGACAGCACGCA
* * *
22632455 GGGGGGATCGGGTCGGTCCCCGGCTTGGGCATTCTGCCTCTCCGGCCGACTGAGCACCCGTACGC
65 GGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCACGC
*
22632520 TCGTTTCGTGGGTTGGCTTAGGCATACGG
130 TCGTTTCATGGGTTGGCTTAGGCATACGG
* * ** *
22632549 AGTTCATTCCCAATCTAAGATCGGACTGGACCAAGGGTTGTGGCAGCA
1 AGTTCATTCCCAATCTAAGATCAGACGGGACTGAGGGTTGTGGTAGCA
22632597 AGACCAACAA
Statistics
Matches: 300, Mismatches: 52, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
157 7 0.02
158 163 0.54
159 124 0.41
160 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.21
Consensus pattern (158 bp):
AGTTCATTCCCAATCTAAGATCAGACGGGACTGAGGGTTGTGGTAGCAGGATCGACAGCACGCAG
GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCACGCT
CGTTTCATGGGTTGGCTTAGGCATACGG
Found at i:22632761 original size:25 final size:26
Alignment explanation
Indices: 22632725--22632776 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
22632715 GTTGACTTAG
*
22632725 GCATACGTAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22632750 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22632776 G
1 G
22632777 ATCGAACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22634330 original size:26 final size:26
Alignment explanation
Indices: 22634277--22634330 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
22634267 TGGTTTGACT
* *
22634277 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACAGAGTTCATCCCCAATC
* *
22634303 TAGGCATACAGAGTTCATTCCTAATC
1 TAGGCATACAGAGTTCATCCCCAATC
22634329 TA
1 TA
22634331 AGATCGAATC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATCCCCAATC
Found at i:22634623 original size:159 final size:158
Alignment explanation
Indices: 22634343--22635770 Score: 1096
Period size: 159 Copynumber: 8.9 Consensus size: 158
22634333 ATCGAATCTG
* * * * *
22634343 ACCGAGGGTTGTGGTAGCAGGATCGACAGCACGC-AGGGCGGA-CTGTGTCGATCCCTGGCTTGC
1 ACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAAGGG-GGATC-GGGCCGATCCCCGGCTTGC
* * * * *
22634406 GCATTCTGCCTCTCCGATCGGTTGAGTGCCCGCACG-TCCGTTTCGTCGGTTGGCTTAGGCATAA
64 GCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCT-CGTTTCGTGGGTTGGCTTAGGCATAC
22634470 GGAGTTCATTCCATGTCTAAGCCCCAACCGA
128 GGAGTTCATTCCATGTCTAAGCCCCAACCGA
* ** * *
22634501 ATCGAGGGTTGTGGCAGCGGGATCGGTAGCACGCTAAGGGGGATCGGGCCAATCCCTGGCTTGCG
1 ACCGAGGGTTGTGGCAGCGGGATCGACAGCACGC-AAGGGGGATCGGGCCGATCCCCGGCTTGCG
* * * * * *
22634566 TATTATACCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGG
65 CATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
** *
22634631 AGTTCATTCCCA-GTCTAAG-ATCAGACCGG
130 AGTTCATT-CCATGTCTAAGCCCCA-ACCGA
* * * * ** * * * * **
22634660 ACTGAGGGTTGTGGTAGCAGGATCAACAATATGCAAGGGGGGACCGGG-CTAGTCCCTGGCTTAT
1 ACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAA-GGGGGATCGGGCCGA-TCCCCGGCTTGC
* * * *
22634724 GCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATA-G
64 GCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* *
22634788 GCAGTTCATTCCATGTCTAAGCCCC-AGCAA
129 G-AGTTCATTCCATGTCTAAGCCCCAACCGA
* * * ** * *** *
22634818 GATCGAGGGTCGTGGCAGCGGGA-CTGGCAGCGTGCAGAGGGGTGCT-GGGGTAATCCCCAGCTT
1 -ACCGAGGGTTGTGGCAGCGGGATC-GACAGCACGCA-AGGGG-GATCGGGCCGATCCCCGGCTT
* * * * *
22634881 GCGTATTCTGCCTCTCCGGCCGGTTGA-CTACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCAT
62 GCGCATTCTGCCTCTCCGGTCGGCTGAGC-GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
* *
22634945 ACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
126 ACGGAGTTCATTCCATGTCTAAGCCCCA-ACCGA
* * * * *
22634979 A-CGAGGGTTGCGGCAGCAGGACCAGCAGCAGGAATGGTAGCACGCAAGGGGGACCAGGCCGATC
1 ACCGAGGGTTGTGGCAGC-GG----G-ATC--G-A---CAGCACGCAAGGGGGATCGGGCCGATC
* * * * * * * *
22635043 CCCGGCTTGCGTATTCTTCCTCTCCAGTCGACTGAGCACCCGCACACTCGTTTCATAGGTTGGCT
54 CCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
*
22635108 TAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACC-A
119 TAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGA
* ** *
22635147 GACCGAGGGTTGTGGCAGCGGCA-CGACAGCACGCAGAGGGGGATCGGGTTGATCCCCAGCTTGC
1 -ACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCA-AGGGGGATCGGGCCGATCCCCGGCTTGC
* * * * * * *
22635211 GCATTATGCCTCTCCGGCCGGCTCAGTGCCCGAACGCTTGTTTCGTGGGTTGACTTAGGCATACG
64 GCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * ** * *
22635276 AAGTTCATTTCCA-GTATAAG-ATCAGATCGG
129 GAGTTCA-TTCCATGTCTAAGCCCCA-ACCGA
* * * * * * *
22635306 ACCGAGGGTTGCGACAGCAGGATCGACAGCACCCAAGGGGGGACCGGGCCGGTCCCCGACTTGCG
1 ACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAA-GGGGGATCGGGCCGATCCCCGGCTTGCG
* * * * * *
22635371 CATTCTACCTCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGA
65 CATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* ***** *
22635436 AATTCATTCCCA-GTCTAAGATTGGACCGG
130 AGTTCATT-CCATGTCTAAGCCCCAACCGA
** * * * * * ** **
22635465 ACCGAGGGTTGCAGCAGCAGGATCGACAGCACGTAGGGGGGA-CTGGGTCGGTCCCTAGCTTTTG
1 ACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAAGGGGGATC-GGGCCGATCCCCGGCTTGCG
* *** * * * * *
22635529 CATTTTGCCTCTCCAACCGGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGAATAGGG
65 CATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * *
22635594 AGTTCATTCCATGTCTAAGCCCTAGCCGG
130 AGTTCATTCCATGTCTAAGCCCCAACCGA
* * * * *
22635623 ACCGAGGGTTGTGGTAGTGGGATCGATAGCACGCAGAGGGGGATCGGGTCGATCCCCAGCTTGCG
1 ACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCA-AGGGGGATCGGGCCGATCCCCGGCTTGCG
* * * * *
22635688 CATTATGCCTCTCCGGCCGGCCT-AGCGCCCGAATGCTCGTTTCGTGGGTTGACTTAGGCATACG
65 CATTCTGCCTCTCCGGTCGG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
22635752 GAGTTCATTCCCA-GTCTAA
129 GAGTTCATT-CCATGTCTAA
22635771 ATCGGACCAG
Statistics
Matches: 1005, Mismatches: 215, Indels: 99
0.76 0.16 0.08
Matches are distributed among these distances:
157 14 0.01
158 269 0.27
159 563 0.56
160 26 0.03
161 2 0.00
163 1 0.00
164 2 0.00
165 1 0.00
166 1 0.00
167 1 0.00
168 1 0.00
169 5 0.00
170 112 0.11
171 7 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
ACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCGC
ATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCCCCAACCGA
Found at i:22635474 original size:805 final size:804
Alignment explanation
Indices: 22634303--22635770 Score: 1850
Period size: 805 Copynumber: 1.8 Consensus size: 804
22634293 ATCCCCAGTC
* * * * *
22634303 TAGGCATACAGAGTTCATTCCTAATCTAAGATCGAATCTGACCGAGGGTTGTGGTAGCAGGATCG
1 TAGGCATACAGAGTTCATTCCTAATCTAAGACCCAACCAGACCGAGGGTTGTGGCAGCAGGATCG
* ** * * * *
22634368 ACAGCACGCAGGGCGGACTGTGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGT
66 ACAGCACGCAGGGCGGACTGGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGT
* * * * *
22634433 GCCCGCACGTCCGTTTCGTCGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAAC
131 GCCCGAACGTCCGTTTCGTCGGTTGACTTAGGCATAAGAAGTTCATTCCATGTATAAGCACCAAC
* * * * ** * * * *
22634498 CGAATCGAGGGTTGTGGCAGCGGGATCGGTAGCACGCTAAGGGGGATCGGGCCAATCCCTGGCTT
196 CGAACCGAGGGTTGCGACAGCAGGATCGACAGCACGCCAAGGGGGACCGGGCCAATCCCCGACTT
* * *
22634563 GCGTATTATACCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
261 GCGCATTATACCTCTCCGGTCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
* * * * ** * * *
22634628 TGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGATCAACAATATG
326 CGAAATTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCAACAACACG
* * ***
22634693 CAAGGGGGGACCGGG-CTAGTCCCTGGCTTATGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGC
391 -AAGGGGGGACCGGGTC-AGTCCCTAGCTTATGCATTCTGCCTCTCCAACCGGCTGAGCGCCCGC
* *
22634757 ACGCCCATTTCATGGGTTGGCTTAGGCATAGGCAGTTCATTCCATGTCTAAGCCCCAGCAAGATC
454 ACGCCCATTTCATGGGTTGGCTTAGGAATAGGCAGTTCATTCCATGTCTAAGCCCCAGCAAGACC
* ** * * *
22634822 GAGGGTCGTGGCAGCGGGA-CTGGCAGCGTGCAGAGGGGTGCTGGGGT-AATCCCCAGCTTGCGT
519 GAGGGTCGTGGCAGCGGGATC-GACAGCACGCAGAGGGG-GATCGGGTCAATCCCCAGCTTGCGC
* * *
22634885 ATTCTGCCTCTCCGGCCGG--TTGACTACCC-ACACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
582 ATTATGCCTCTCCGGCCGGCCTAG-C-ACCCGA-ACGCTCGTTTCGTGGGTTGACTTAGGCATAC
22634947 GGAGTTCATT-CCATGTCTAAGCCCCAGTCGGAACGAGGGTTGCGGCAGCAGGACCAGCAGCAGG
644 GGAGTTCATTCCCA-GTCTAAGCCCCAGTCGGAACGAGGGTTGCGGCAGCAGGACCAGCAGCAGG
22635011 AATGGTAGCACGCAAGGGGGACCAGGCCGATCCCCGGCTTGCGTATTCTTCCTCTCCAGTCGACT
708 AATGGTAGCACGCAAGGGGGACCAGGCCGATCCCCGGCTTGCGTATTCTTCCTCTCCAGTCGACT
22635076 GAGCACCCGCACACTCGTTTCATAGGTTGGCT
773 GAGCACCCGCACACTCGTTTCATAGGTTGGCT
* *
22635108 TAGGCATACAGAGTTCATTCC-ATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGC-GGCA-
1 TAGGCATACAGAGTTCATTCCTA-ATCTAAGACCCAACCAGACCGAGGGTTGTGGCAGCAGG-AT
* * *
22635170 CGACAGCACGCAGAGGGGGA-TCGGGTTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCT
64 CGACAGCACGCAG-GGCGGACT-GGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCT
* * *
22635234 CAGTGCCCGAACG-CTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTTCCA-GTATAAG-
127 CAGTGCCCGAACGTC-CGTTTCGTCGGTTGACTTAGGCATAAGAAGTTCA-TTCCATGTATAAGC
* * * **
22635296 ATCAGATCGGACCGAGGGTTGCGACAGCAGGATCGACAGCAC-CCAAGGGGGGACCGGGCCGGTC
190 ACCA-ACCGAACCGAGGGTTGCGACAGCAGGATCGACAGCACGCCAA-GGGGGACCGGGCCAATC
* * *
22635360 CCCGACTTGCGCATTCTACCTCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACT
253 CCCGACTTGCGCATTATACCTCTCCGGTCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACT
** *
22635425 TAGGCATACGAAATTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGCAGCAGGATCG
318 TAGGCATACGAAATTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCA
* * * * * *
22635490 ACAGCACGTAGGGGGGACTGGGTCGGTCCCTAGCTTTTGCATTTTGCCTCTCCAACCGGCTGAGC
383 ACAACACGAAGGGGGGACCGGGTCAGTCCCTAGCTTATGCATTCTGCCTCTCCAACCGGCTGAGC
* * * *
22635555 GCCCGCATGCCCGTTTCATGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCCCTAGC
448 GCCCGCACGCCCATTTCATGGGTTGGCTTAGGAATAGGCAGTTCATTCCATGTCTAAGCCCCAGC
** * * * * *
22635620 CGGACCGAGGGTTGTGGTAGTGGGATCGATAGCACGCAGAGGGGGATCGGGTCGATCCCCAGCTT
513 AAGACCGAGGGTCGTGGCAGCGGGATCGACAGCACGCAGAGGGGGATCGGGTCAATCCCCAGCTT
* *
22635685 GCGCATTATGCCTCTCCGGCCGGCCTAGCGCCCGAATGCTCGTTTCGTGGGTTGACTTAGGCATA
578 GCGCATTATGCCTCTCCGGCCGGCCTAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATA
22635750 CGGAGTTCATTCCCAGTCTAA
643 CGGAGTTCATTCCCAGTCTAA
22635771 ATCGGACCAG
Statistics
Matches: 555, Mismatches: 93, Indels: 31
0.82 0.14 0.05
Matches are distributed among these distances:
803 6 0.01
804 240 0.43
805 302 0.54
806 7 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (804 bp):
TAGGCATACAGAGTTCATTCCTAATCTAAGACCCAACCAGACCGAGGGTTGTGGCAGCAGGATCG
ACAGCACGCAGGGCGGACTGGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGT
GCCCGAACGTCCGTTTCGTCGGTTGACTTAGGCATAAGAAGTTCATTCCATGTATAAGCACCAAC
CGAACCGAGGGTTGCGACAGCAGGATCGACAGCACGCCAAGGGGGACCGGGCCAATCCCCGACTT
GCGCATTATACCTCTCCGGTCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
CGAAATTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCAACAACACG
AAGGGGGGACCGGGTCAGTCCCTAGCTTATGCATTCTGCCTCTCCAACCGGCTGAGCGCCCGCAC
GCCCATTTCATGGGTTGGCTTAGGAATAGGCAGTTCATTCCATGTCTAAGCCCCAGCAAGACCGA
GGGTCGTGGCAGCGGGATCGACAGCACGCAGAGGGGGATCGGGTCAATCCCCAGCTTGCGCATTA
TGCCTCTCCGGCCGGCCTAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCCCCAGTCGGAACGAGGGTTGCGGCAGCAGGACCAGCAGCAGGAATGGTAG
CACGCAAGGGGGACCAGGCCGATCCCCGGCTTGCGTATTCTTCCTCTCCAGTCGACTGAGCACCC
GCACACTCGTTTCATAGGTTGGCT
Found at i:22635540 original size:317 final size:315
Alignment explanation
Indices: 22634342--22635770 Score: 1156
Period size: 317 Copynumber: 4.5 Consensus size: 315
22634332 GATCGAATCT
* * * * * * * *
22634342 GACCGAGGGTTGTGGTAGCAGGATCGACAGCACGC-AGGGCGGACTGTGTCGATCCCTGGCTTGC
1 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGGACCGGGCCGATCCCCGACTTGC
* * ** * * * *
22634406 GCATTCTGCCTCTCCGATCGGTTGAGTGCCCGCACG-TCCGTTTCGTCGGTTGGCTTAGGCATAA
66 GCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCT-CGTTTCATGGGTTGACTTAGGCATAC
* * * * **
22634470 GGAGTTCATTCCATGTCTAAGCCCCAACC-GAATCGAGGGTTGTGGCAGCGGGATCGGTAGCACG
130 GAAGTTCATTCCATGTCTAAGACCCGACCAG-ACCGAGGGTTGTGGCAGC-GGA-CGACAGCACG
** ** * * *
22634534 CTA-AGGGGGA-TCGGGCCAATCCCTGGCTTGCGTATTATACCTCTCCGGTCGGCTCAGCGCCCG
192 C-AGAGGGGGACTCGGG-TGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCG
* * *
22634597 CACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAGATCAGACCG
255 AACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAG-CCG
* * * * ** * * * * *
22634659 GACTGAGGGTTGTGGTAGCAGGATCAACAATATGCAAGGGGGGACCGGG-CTAGTCCCTGGCTTA
1 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGGACCGGGCCGA-TCCCCGACTTG
* * * * * * *
22634723 TGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAG
65 CGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* * * * * * **
22634788 GCAGTTCATTCCATGTCTAAG-CCCCAGCAAGATCGAGGGTCGTGGCAGCGGGACTGGCAGCGTG
130 GAAGTTCATTCCATGTCTAAGACCCGA-CCAGACCGAGGGTTGTGGCAGC-GGAC-GACAGCACG
* * * * * * *
22634852 CAGAGGGGTG-CTGGGGTAATCCCCAGCTTGCGTATTCTGCCTCTCCGGCCGGTTGA-CTACCC-
192 CAGAGGGG-GACTCGGGTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGC-GCCCG
* * *
22634914 ACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCG
255 A-ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAGCCG
* * *
22634977 GAACGAGGGTTGCGGCAGCAGGACCAGCAGCAGGAATGGTAGCACGCAA-GGGGGACCAGGCCGA
1 GACCGAGGGTTGCGGCAGCAGGATC-G-A-C---------AGCACGCAAGGGGGGACCGGGCCGA
* * * * * * * *
22635041 TCCCCGGCTTGCGTATTCTTCCTCTCCAGTCGACTGAGCACCCGCACACTCGTTTCATAGGTTGG
54 TCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGA
* *
22635106 CTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCGGCA
119 CTTAGGCATACGA-AGTTCATTCCATGTCTAAGACCCGACCAGACCGAGGGTTGTGGCAGCGG-A
22635170 CGACAGCACGCAGAGGGGGA-TCGGGTTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCT
182 CGACAGCACGCAGAGGGGGACTCGGG-TGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCT
* * * * *
22635234 CAGTGCCCGAACGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTTCCA-GTATAAGAT
246 CAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TTCCATGTCTAAGAC
*
22635298 CAGATCG
310 CAG-CCG
* * *
22635305 GACCGAGGGTTGCGACAGCAGGATCGACAGCACCCAAGGGGGGACCGGGCCGGTCCCCGACTTGC
1 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGGACCGGGCCGATCCCCGACTTGC
* *
22635370 GCATTCTACCTCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
66 GCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* *** * ** *
22635435 AAATTCATTCCCA-GTCTAAGATTGGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGT
131 AAGTTCATT-CCATGTCTAAGACCCGACCAGACCGAGGGTTGTGGCAGC-GGA-CGACAGCACGC
* * ** * ** * *
22635499 AG-GGGGGACT-GGGTCGGTCCCTAGCTTTTGCATTTTGCCTCTCCAACCGGCTGAGCGCCCGCA
193 AGAGGGGGACTCGGGT-GATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGAA
* * * * * * *
22635562 TGCCCGTTTCATGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCG
257 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACC-AGCCG
* * ** * * *
22635622 GACCGAGGGTTGTGGTAGTGGGATCGATAGCACGC-AGAGGGGGATCGGGTCGATCCCC-AGCTT
1 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAG-GGGGGACCGGGCCGATCCCCGA-CTT
* * * * * *
22635685 GCGCATTATGCCTCTCCGGCCGGCCT-AGCGCCCGAATGCTCGTTTCGTGGGTTGACTTAGGCAT
64 GCGCATTCTGCCTCTCCGGTCGG-CTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
*
22635749 ACGGAGTTCATTCCCA-GTCTAA
128 ACGAAGTTCATT-CCATGTCTAA
22635771 ATCGGACCAG
Statistics
Matches: 908, Mismatches: 157, Indels: 94
0.78 0.14 0.08
Matches are distributed among these distances:
316 17 0.02
317 364 0.40
318 254 0.28
319 9 0.01
320 1 0.00
321 1 0.00
325 1 0.00
326 1 0.00
327 9 0.01
328 121 0.13
329 118 0.13
330 12 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (315 bp):
GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGGACCGGGCCGATCCCCGACTTGC
GCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
AAGTTCATTCCATGTCTAAGACCCGACCAGACCGAGGGTTGTGGCAGCGGACGACAGCACGCAGA
GGGGGACTCGGGTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGAACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGCCG
Found at i:22635782 original size:15 final size:16
Alignment explanation
Indices: 22635762--22635796 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
22635752 GAGTTCATTC
*
22635762 CCAGTCTAA-ATCGGA
1 CCAGTCTAAGATCAGA
22635777 CCAGTCTAAGATCAGA
1 CCAGTCTAAGATCAGA
22635793 CCAG
1 CCAG
22635797 ACAACACGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.34, C:0.29, G:0.20, T:0.17
Consensus pattern (16 bp):
CCAGTCTAAGATCAGA
Found at i:22635941 original size:26 final size:26
Alignment explanation
Indices: 22635905--22635957 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22635895 GTTGAATTAG
22635905 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22635931 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22635957 G
1 G
22635958 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22636284 original size:26 final size:26
Alignment explanation
Indices: 22636243--22636300 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
22636233 CATAGGTTGG
*
22636243 CTAAGGCATTCGGAGTTCATT-CCATGT
1 CTAA-GCATACGGAGTTCATTCCCA-GT
22636270 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
22636296 CTAAG
1 CTAAG
22636301 AGTTTGAGCC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 22 0.76
27 7 0.24
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:22636386 original size:11 final size:11
Alignment explanation
Indices: 22636370--22636395 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
22636360 CCTGGGGTAC
22636370 CATCGTCGGAG
1 CATCGTCGGAG
22636381 CATCGTCGGAG
1 CATCGTCGGAG
22636392 CATC
1 CATC
22636396 ACTGGAGAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:22637296 original size:159 final size:161
Alignment explanation
Indices: 22636960--22637807 Score: 671
Period size: 159 Copynumber: 5.4 Consensus size: 161
22636950 CTGAGTGTCA
* * * * * *
22636960 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCTCA-GTCTAAG-ATCAGATC-
1 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCACCAGACCG
* ** * * * * * ** *
22637022 AGATCGAGGGTTACGGCACCAGGATCTACAGCACGC-AGGGGGGA-CCAGGGTGATCCCTGGCTT
65 A-ACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGGGGGATCC-GGCCGATCCCCGGCTT
* * * * **
22637085 ACGTATTTTGCCTCTCCGGTTGGT-CGAGTACCC
128 GCGCATTATGCCTCTCCGGCTGGTACGAGCGCCC
* ** * * * * *
22637118 GCACGCCCGTTTTGTGGGTTGGCTTAGGCAGAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAG-
1 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGA
* * * * *
22637182 ACCGAGGGTTGTGACAGCGGGACCGACAACACACAAAGGGGGA-CTGGGCTGATCCCCGGCTTGC
66 ACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGGGGGATC-CGGCCGATCCCCGGCTTGC
* *
22637246 GCATTATGCCTCTACGGCTGGTAC-AGTGCCC
130 GCATTATGCCTCTCCGGCTGGTACGAGCGCCC
* * * * *
22637277 GAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATGCCCA-GTCTAAG-ATCGGACCG
1 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCACCAGACCG
* * * ** * * * *
22637340 AACTGAGGGTTATGGCAGCAGGATCGACAGCAC-GTATGAGGGATCGGGCCGATCCCCGACTTGC
65 AACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGGGGGATCCGGCCGATCCCCGGCTTGC
* * *
22637404 GCATTCTGCCTCTTCGGCT-G-ACTGAGCGTCC
130 GCATTATGCCTCTCCGGCTGGTAC-GAGCGCCC
* * * * *
22637435 GCACGGTCGTTTCATGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGG
1 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGA
* * * * *
22637499 ACCGAGGGTTGTGGCAGCGGGACCGGCAGCACACAGAGGGGGATCCGGCCGATCCCTGGCTTGCT
66 ACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGGGGGATCCGGCCGATCCCCGGCTTGCG
* * * *
22637564 CATTATGCCTCTTCGACCGGCT-C-TGCGCCC
131 CATTATGCCTCTCCGGCTGG-TACGAGCGCCC
* * * * *
22637594 GCACGCTCGTTTCTTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACCG
1 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCG
* * * * * * * *
22637657 AACCGAGGGTTGCGGTAGTAGGATCGACAGCACGC-AGGGGGGA-CCGGCCAATCCCCGGCTTAC
65 AACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGGGGGATCCGGCCGATCCCCGGCTTGC
* *
22637720 GCATTTTGCCTCTCCGACT-G-ACTGAGCGCCC
130 GCATTATGCCTCTCCGGCTGGTAC-GAGCGCCC
* * *
22637751 GCACGCTCGTTTCGTGGTTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCAC
1 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAC
22637808 ATGGAGTTCA
Statistics
Matches: 543, Mismatches: 123, Indels: 48
0.76 0.17 0.07
Matches are distributed among these distances:
155 1 0.00
156 6 0.01
157 89 0.16
158 200 0.37
159 238 0.44
160 8 0.01
161 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (161 bp):
GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGA
ACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGGGGGATCCGGCCGATCCCCGGCTTGCG
CATTATGCCTCTCCGGCTGGTACGAGCGCCC
Found at i:22637504 original size:317 final size:314
Alignment explanation
Indices: 22636962--22637805 Score: 1039
Period size: 317 Copynumber: 2.7 Consensus size: 314
22636952 GAGTGTCAGC
* * * * *
22636962 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCTCAGTCTAAGATCAGATCAGATC
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCC-CAGTCTAAGATCGGA-CCGAAC
* * * * *
22637027 GAGGGTTACGGCACCAGGATCTACAGCACGCAGGGGGGACCAGGG-TGATCCCTGGCTTACGTAT
64 GAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGA-C-GGGCCGATCCCCGGCTTACGCAT
* * ** * * * *
22637091 TTTGCCTCTCCGGTTG-GTCGAGTACCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCAGAGGGAG
127 TTTGCCTCTCCGGCTGACT-GAGCGCCCGCACGCTCGTTTCGTGGATTGGCTTAGGCATAGGGAG
**
22637155 TTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGACAGCGGGACCGACAACACACAAAG
191 TTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGACAGCGGGACCGACAACACACAAAG
* * * * *
22637220 GGGGA-CTGGGCTGATCCCCGGCTTGCGCATTATGCCTCTACGGCTGG-TACAGTGCCCGA
256 GGGGATC-CGGCCGATCCCCGGCTTGCGCATTATGCCTCTACGACCGGCT-CAGCGCCCGA
22637279 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATGCCCAGTCTAAGATCGGACCGAACT
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGATCGGACCGAAC-
* * * * * *
22637344 GAGGGTTATGGCAGCAGGATCGACAGCACGTATGAGGGATCGGGCCGATCCCCGACTTGCGCATT
64 GAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGA-CGGGCCGATCCCCGGCTTACGCATT
* * * * *
22637409 CTGCCTCTTCGGCTGACTGAGCGTCCGCACGGTCGTTTCATGGATTGGCTTAGGCATAGGGAGTT
128 TTGCCTCTCCGGCTGACTGAGCGCCCGCACGCTCGTTTCGTGGATTGGCTTAGGCATAGGGAGTT
* * * * *
22637474 CATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACACAGAGGG
193 CATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGACAGCGGGACCGACAACACACAAAGGG
* * * * *
22637539 GGATCCGGCCGATCCCTGGCTTGCTCATTATGCCTCTTCGACCGGCTCTGCGCCCGC
258 GGATCCGGCCGATCCCCGGCTTGCGCATTATGCCTCTACGACCGGCTCAGCGCCCGA
* *
22637596 ACGCTCGTTTCTTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACC
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTCTAAGATCGGACCGAA-C
* * * * *
22637661 GAGGGTTGCGGTAGTAGGATCGACAGCACGCAGGGGGGACCGGCCAATCCCCGGCTTACGCATTT
64 GAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGACGGGCCGATCCCCGGCTTACGCATTT
* * * *
22637726 TGCCTCTCCGACTGACTGAGCGCCCGCACGCTCGTTTCGTGGTTTGGCTTAGGCATACGAAGTTC
129 TGCCTCTCCGGCTGACTGAGCGCCCGCACGCTCGTTTCGTGGATTGGCTTAGGCATAGGGAGTTC
22637791 ATTCCATGTCTAAGC
194 ATTCCATGTCTAAGC
22637806 ACATGGAGTT
Statistics
Matches: 450, Mismatches: 69, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
316 100 0.22
317 343 0.76
318 7 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (314 bp):
ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGATCGGACCGAACGA
GGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGACGGGCCGATCCCCGGCTTACGCATTTTG
CCTCTCCGGCTGACTGAGCGCCCGCACGCTCGTTTCGTGGATTGGCTTAGGCATAGGGAGTTCAT
TCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGACAGCGGGACCGACAACACACAAAGGGGGA
TCCGGCCGATCCCCGGCTTGCGCATTATGCCTCTACGACCGGCTCAGCGCCCGA
Found at i:22638530 original size:26 final size:26
Alignment explanation
Indices: 22638501--22638553 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22638491 GTTGACTTAG
*
22638501 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*
22638527 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
22638553 G
1 G
22638554 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:22638816 original size:158 final size:160
Alignment explanation
Indices: 22638654--22639029 Score: 470
Period size: 160 Copynumber: 2.4 Consensus size: 160
22638644 CGGCTGAGCG
* * *
22638654 CCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGACTTCATTCCATGTC-AAGCCCCAGT-
1 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCA-TC
* * *
22638717 CGGACCGAGGGTTGTGGCAGTGGGACTGGCAGCACACAGAGGGGGA-CCGGGCCAATCCCCGTCT
65 CGAACCGAGGGTTGTGGCAGCGGGACTGGCAGCACACAGAGGGGGATCCGGGCCAATCCCCGGCT
** *
22638781 TACGCATTATACCTCTCCGGTCGACTGAACA
130 TACGCATTATACCTCTCCGACCGACTCAACA
* * *
22638812 CCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAACCCCATCC
1 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCATCC
* ** * **
22638877 GAACTGAGGGTTGTGGCAGCGGGACTGGCAGCACGTAGAGGGGGATCGGGGCTGATCCCCGGCTT
66 GAACCGAGGGTTGTGGCAGCGGGACTGGCAGCACACAGAGGGGGATCCGGGCCAATCCCCGGCTT
* * ***
22638942 ACGCATTATGCCTCTCCGACCGGCTCAGTG
131 ACGCATTATACCTCTCCGACCGACTCAACA
* * * * *
22638972 CCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
22639030 ATATGGAGTT
Statistics
Matches: 184, Mismatches: 31, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
158 49 0.27
159 48 0.26
160 87 0.47
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.23
Consensus pattern (160 bp):
CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCATCC
GAACCGAGGGTTGTGGCAGCGGGACTGGCAGCACACAGAGGGGGATCCGGGCCAATCCCCGGCTT
ACGCATTATACCTCTCCGACCGACTCAACA
Found at i:22639004 original size:160 final size:159
Alignment explanation
Indices: 22638598--22639027 Score: 524
Period size: 158 Copynumber: 2.7 Consensus size: 159
22638588 GACAGCACGC
* * * * *
22638598 AGGGGAACCGGGCCGATCCCTGGCTTGCGCATT-TGGCCTTTCCGGCCGGCTGAGCGCCCGCACA
1 AGGGGGACCGGGCCGATCCCCGGCTTACGCATTAT-GCCTCTCCGGCCGGCTGAGCGCCCGCACG
* * * *
22638662 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGACTTCATTCCATGTC-AAGCCCCAGTCGGACCGAG
65 CCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAACCCCAGTCGAACCGAG
*
22638726 GGTTGTGGCAGTGGGACTGGCAGCACACAG
130 GGTTGTGGCAGCGGGACTGGCAGCACACAG
* * * * * * * *
22638756 AGGGGGACCGGGCCAATCCCCGTCTTACGCATTATACCTCTCCGGTCGACTGAACACCCGCATGC
1 AGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCACGC
* *
22638821 CCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAACCCCA-TCCGAACTGAG
66 CCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAACCCCAGT-CGAACCGAG
**
22638885 GGTTGTGGCAGCGGGACTGGCAGCACGTAG
130 GGTTGTGGCAGCGGGACTGGCAGCACACAG
* * * * * *
22638915 AGGGGGATCGGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTCAGTGCCCGTACG
1 AGGGGGA-CCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCACG
* * * *
22638980 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
65 CCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
22639028 GCATATGGAG
Statistics
Matches: 227, Mismatches: 41, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
158 92 0.41
159 49 0.22
160 86 0.38
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (159 bp):
AGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCACGC
CCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAACCCCAGTCGAACCGAGG
GTTGTGGCAGCGGGACTGGCAGCACACAG
Found at i:22639032 original size:26 final size:26
Alignment explanation
Indices: 22639002--22639054 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22638992 GTTGACTTAG
22639002 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
22639028 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22639054 G
1 G
22639055 ATTGGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22639565 original size:354 final size:348
Alignment explanation
Indices: 22638824--22639729 Score: 874
Period size: 354 Copynumber: 2.6 Consensus size: 348
22638814 CGCATGCCCA
* *
22638824 TTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAACCCCATCCGAACTGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTGAGGGTT
* * * *
22638889 GTGGCAGCGGGACTGGCAGCACGTAGAGGGGGATCGGGGCTGATCCCCGGCTTACGCATTATGCC
66 GTGGCAGCAGGACTGGCAGCACGCAGAGGGGGATCGGAGCTGATCCCCGACTTACGCATTATGCC
** *
22638954 TCTCCGACCGGCTCAGTGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
131 TCTCCGACCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
** * **
22639019 CATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAAAACGAGGGTTGCGACAGTA
196 CAAATCTAAGCATATCGAGTTCATTCCCAGTCTAAGATCAGACCAAAACGAGGGTT--GAC---A
* * *
22639084 GGACCAGCAGCAGGATCGGCAGCACGCAGGGGGGGACTAGGTCGATCTCTGACTTGCTCATTCTA
256 -G---AGCAGCAGGATCGGCAGCACGCAGGAGGGGACTAGGTCGATCCCAGACTTGCTCATTCTA
* * * * *
22639149 CCTTTTCGATCGGCTGAGCGCCTGCATACTCG
317 CCTTCTCGACCGGCTGAGCGCCCGCACACCCG
* * *
22639181 TTTCGTGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACTGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTGAGGGTT
* *
22639246 GTGGCAGCATGACCTGTAGCGGGATCGGCTACACGCAGAGGGGGA-CTGAGCTGATCCCCGACTT
66 GTGGCAGCAGGA-CTG--GC---A---G---CACGCAGAGGGGGATCGGAGCTGATCCCCGACTT
* * *** * * * *
22639310 GCGCATTATGCCTCTTCGGTTGGGTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
119 ACGCATTATGCCTCTCCGACCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
** *
22639375 CGGAGTTCA-TCCACAATCTAAGCATA-CGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
184 CGGAGTTCATTCCA-AATCTAAGCATATCGAGTTCATTCCCAGTCTAAGATCAGACCAAAACGAG
* * * *
22639438 GGTT-AC-G-GTAGCAGGATCGGCGGCACGTA-GAGGGGACT-GGGCTGATCCCCAG-CTTGCTC
248 GGTTGACAGAGCAGCAGGATCGGCAGCACGCAGGAGGGGACTAGGTC-GAT-CCCAGACTTGCTC
22639497 ATTCTACC-TCTCTGACCGGCTGAGCGCCCGCACACCCG
311 ATTCTACCTTCTC-GACCGGCTGAGCGCCCGCACACCCG
* * *
22639535 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGTCCCAGCCGAACTGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTGAGGGTT
* * * * * * * **
22639600 GTGGCAACGGGACCGACAACACGCAGAGGGGGA-CTGG-G-TCGATAGCCTG-CTTGTGCATTAT
66 GTGGCAGCAGGACTGGCAGCACGCAGAGGGGGATC-GGAGCT-GAT-CCCCGACTTACGCATTAT
* * * * * * *
22639661 GCCTCGT-GGGCCGGCTCAGCGCCCGAACGCTCGTTTCGTGTGTTGACTT-TGCATACGGAGTTC
128 GCCTC-TCCGACCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
22639724 A-TCCAA
192 ATTCCAA
22639730 TCGAGATCGA
Statistics
Matches: 461, Mismatches: 68, Indels: 57
0.79 0.12 0.10
Matches are distributed among these distances:
340 1 0.00
341 19 0.04
342 68 0.15
343 5 0.01
348 1 0.00
351 1 0.00
353 8 0.02
354 116 0.25
355 22 0.05
357 70 0.15
358 3 0.01
359 1 0.00
360 2 0.00
363 1 0.00
364 2 0.00
366 1 0.00
367 39 0.08
368 88 0.19
369 13 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (348 bp):
TTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTGAGGGTT
GTGGCAGCAGGACTGGCAGCACGCAGAGGGGGATCGGAGCTGATCCCCGACTTACGCATTATGCC
TCTCCGACCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
CAAATCTAAGCATATCGAGTTCATTCCCAGTCTAAGATCAGACCAAAACGAGGGTTGACAGAGCA
GCAGGATCGGCAGCACGCAGGAGGGGACTAGGTCGATCCCAGACTTGCTCATTCTACCTTCTCGA
CCGGCTGAGCGCCCGCACACCCG
Found at i:22640532 original size:26 final size:26
Alignment explanation
Indices: 22640496--22640548 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22640486 GTTGACTTAG
*
22640496 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
22640522 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22640548 G
1 G
22640549 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22640874 original size:26 final size:26
Alignment explanation
Indices: 22640838--22640889 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
22640828 GTTGACTTAG
*
22640838 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
22640864 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22640890 TATCAGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22645955 original size:26 final size:26
Alignment explanation
Indices: 22645926--22645978 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22645916 CCGATCCGAT
22645926 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
22645952 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
22645978 C
1 C
22645979 CTAAGCCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22647312 original size:25 final size:26
Alignment explanation
Indices: 22647264--22647315 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
22647254 CTAGTTTGAT
*
22647264 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
22647290 CTTAGACTAGG-ATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22647315 C
1 C
22647316 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22647893 original size:878 final size:869
Alignment explanation
Indices: 22646027--22648039 Score: 2171
Period size: 870 Copynumber: 2.3 Consensus size: 869
22646017 GGCCCGATCA
* *
22646027 CCCCCTACGTGCTGTCGATCTTGCTGCCTTAACCCTCGGTCCGGT-TCGATCTTAGACTGGGAAT
1 CCCCCTACGTGCTGTCGATCCTGCTGCCATAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAAT
* * * * * * * *
22646091 GAACTTTGAATGCATAAGTCAACCCACGAAACGAGCCTGCAGGCACTGAACCGGTTGAAGAGGCA
65 GAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGATCGAAGAGGCA
* * *
22646156 TAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTACGTGCTACCGGTCCCACTGCCACAACCC
130 TAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGGTCCCACTGCCACAACCC
* * *
22646221 TCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCCATGCCTAAGCCAACCCACGAAACGGAC
195 TCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGC
* * * *
22646286 GTGCTGGCACTCAACCAGCCAGAGAGCCAGAATACATAAGCGGGGATGGCCTGATCCCCCCTGTG
260 ATGCGGGCACTCAACCAGCCAGAGAGCCAGAATACATAAGCGGGGATGGCCCGATCCCCCCTGCG
* * * * * * *
22646351 TGCTACCGATCCTACTGTCGCCACCCTCGTTTCGGTCCGATCTTAAATTGGGAATGCACTCTGTA
325 TGCTACCGATCCTACTGCCGCAACCCTCGTCTCAGTCCGATCTTAAACTGGGAATGAACTCCGTA
* * * * ** *
22646416 TGCTTAGATCGGGGACGAACTCCGTATGCCTAAATCAACCCATGAAATGAGCTTGCGGGCGTTGA
390 TGCTTAGATCGAGGACGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCATGCGGGCACTCA
* * * * *
22646481 GCCGACCAGAGAGGCCGGTTGAAGAGGCATAATGCGCAGGCTTGGGATCAGCTCGATCCCCTCTA
455 GCCGACCAGAGAGGCCAGTAGAAGAGGCATAATGCGCAAGCTCGGGATCAGCCCGATCCCCTCTA
** * *
22646546 TGTACTATTGATCCCACTGTCGGTCCTCCTACCGATCCGACTGGGACTTAGACATGCAGTGAACT
520 TGTA-TACCGATCCCACTGTCGGTCCTCCAACCGATCCGACTGGGACTTAGACATGCAATGAACT
* * * * *
22646611 CCGTATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCACTTAGCTGGCTAAAGAAGCAGAATT
584 CCGTATGCCTAAGCCAACCAACGAAACAAGCGTGCAGGCACTCAGCCGGCTAAAGAAGCAGAATT
** * * *
22646676 GGTAAGCCAGGGATCAACTCGGACCCCCCTGCATGCTGTCGATCCTACTGCTGGTCCCGTTACCG
649 GACAAGCCAGGGATCAACTCCGACCCCCCTGCATGCTATCGATCCTACTGCTGGTCCCGCTACCG
* * * *
22646741 TAACCTTCGGCCCGGTCCAATCTTATACTGGGAATGAACTCCGTATGCTTAGACATAGAATGAAA
714 CAACCTTCGGCCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACATAGAATGAAA
** * * * ** * *
22646806 CTCTGTATGCCTAAGCCAACCCACAAAAAGAGCGTGCGGGTGCTCAGTCAGCCGAAGAGGCAGAA
779 CTCCATATACCGAAGCCAACCCACAAAAAGAACGTGCAAGCGCTCAGCCAGCCGAAGAGGCAGAA
** * * *
22646871 TGTGCAAGTCGAGAATTGACCTTGTC
844 TGCACAAGCCAAGAATTGACCTAGTC
* * * * *
22646897 CCCCCTACGTGCTGTCGATCCTGCTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTTGGAATG
1 CCCCCTACGTGCTGTCGATCCTGCTGCCATAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
* * * **
22646962 AACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGT-CTGAG-AGCTAAGCCGATCGAAGAGTT
66 AACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGGCA-CTGAGCCGATCGAAGAGGC
* * ** * * * *
22647025 ATAATTCACAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTGTTGGTCTCGCTACCATAACC
129 ATAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGGTCCCACTGCCACAACC
* * **
22647090 CTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATAAAACGGG
194 CTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGG
* * * * * * ** *
22647155 TATGCGGGCGCTCATCCGGTC-GAAGAGGCAGAATATGTAAGATGGGGATCGGCCCGATCCCCCC
259 CATGCGGGCACTCAACCAGCCAG-AGAGCCAGAATACATAAG-CGGGGAT-GGCCCGATCCCCCC
* * * ** *
22647219 TGCGTGCTGCCGATCCTGCTGCCGCAACCTTCAGTCT-AGTTTGATCTTAGACTGGGAATGAACT
321 TGCGTGCTACCGATCCTACTGCCGCAACCCTC-GTCTCAGTCCGATCTTAAACTGGGAATGAACT
* * * *
22647283 CCGTATGCTTAGA-CTAGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGC
385 CCGTATGCTTAGATCGAGGACGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCATGCGGGC
* *
22647347 ACTCAGCCGATCGGAGAGGCCAGTCAG-AGAGGCATAATGCG-AAGC-CGAGGATCAGCCCGATC
450 ACTCAGCCGACCAGAGAGGCCAGT-AGAAGAGGCATAATGCGCAAGCTCG-GGATCAGCCCGAT-
** * ** *
22647409 CCCCTCTGCATGT-TACCGATCCTGCTGTCGGTTCTACTGCCACAACCCTCGGTCCGGTTGGGGC
512 CCCCTCT--ATGTATACCGATCCCACTGTCGG-TC--CT--C-CAA--C-CGATCCGACTGGGAC
* * **
22647473 TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCAACGAAATGAGCGTGCAGGCACTCAGCC
566 TTAGACATGCAATGAACTCCGTATGCCTAAGCCAACCAACGAAACAAGCGTGCAGGCACTCAGCC
* * * * *
22647538 GG-TCGAAG-AGCCAGAA-TGCACAAGTCAGGGATCCAC-CCGATCCCCCTGTATGCTATCGATC
631 GGCT-AAAGAAG-CAGAATTG-ACAAGCCAGGGATCAACTCCGACCCCCCTGCATGCTATCGATC
* * ** * **
22647599 CT-GTGCTGGTCCTGCTGTCGCAACCCTT-GGTCCGATCTGATCTTAGACTGGGAATGAACTCCA
693 CTACTGCTGGTCCCGCTACCGCAA-CCTTCGGCCCGATCCAATCTTAGACTGGGAATGAACTCCA
* *
22647662 TATGCTTAGACAT-GTAATG-AACTCCATATACCGAAGCCAACCCACGAAACGAACGTGCAAGCG
757 TATGCTTAGACATAG-AATGAAACTCCATATACCGAAGCCAACCCACAAAAAGAACGTGCAAGCG
* * *
22647725 CTCAGCC-GACTGGAGAGGCAGAATGCACAAGCCAAGGATT-AGCCTAGTCC
821 CTCAGCCAG-CCGAAGAGGCAGAATGCACAAGCCAAGAATTGA-CCTAGT-C
* * * * *
22647775 CCCCCTGCGTGTTGTCGATCCTGCTGCCACAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATG
1 CCCCCTACGTGCTGTCGATCCTGCTGCCATAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
* * *
22647840 AACTCCGTATGCCTAAGTCAAGCCACGAAACAAGCGTGCGGGCACTGAGCCGATCGAAGAGGCAT
66 AACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGATCGAAGAGGCAT
* * * * * *
22647905 AATGCGA-GAGTCGGGGATCGGCCCAGTCCTCCTCTGCGTGCTGCCGGTCCCACTGCCCCAACCC
131 AATGC-ACAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGGTCCCACTGCCACAACCC
* *
22647969 TTGGTCCGACTGGGGCATAGACATGG-ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGC
195 TCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGC
*
22648033 GTGCGGG
260 ATGCGGG
22648040 TGTCGAGCCC
Statistics
Matches: 931, Mismatches: 180, Indels: 57
0.80 0.15 0.05
Matches are distributed among these distances:
869 4 0.00
870 260 0.28
871 102 0.11
872 75 0.08
873 7 0.01
874 2 0.00
876 3 0.00
877 112 0.12
878 241 0.26
879 36 0.04
880 89 0.10
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (869 bp):
CCCCCTACGTGCTGTCGATCCTGCTGCCATAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
AACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGATCGAAGAGGCAT
AATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGGTCCCACTGCCACAACCCT
CGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCA
TGCGGGCACTCAACCAGCCAGAGAGCCAGAATACATAAGCGGGGATGGCCCGATCCCCCCTGCGT
GCTACCGATCCTACTGCCGCAACCCTCGTCTCAGTCCGATCTTAAACTGGGAATGAACTCCGTAT
GCTTAGATCGAGGACGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCATGCGGGCACTCAG
CCGACCAGAGAGGCCAGTAGAAGAGGCATAATGCGCAAGCTCGGGATCAGCCCGATCCCCTCTAT
GTATACCGATCCCACTGTCGGTCCTCCAACCGATCCGACTGGGACTTAGACATGCAATGAACTCC
GTATGCCTAAGCCAACCAACGAAACAAGCGTGCAGGCACTCAGCCGGCTAAAGAAGCAGAATTGA
CAAGCCAGGGATCAACTCCGACCCCCCTGCATGCTATCGATCCTACTGCTGGTCCCGCTACCGCA
ACCTTCGGCCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACATAGAATGAAACT
CCATATACCGAAGCCAACCCACAAAAAGAACGTGCAAGCGCTCAGCCAGCCGAAGAGGCAGAATG
CACAAGCCAAGAATTGACCTAGTC
Found at i:22648128 original size:26 final size:26
Alignment explanation
Indices: 22648099--22648149 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
22648089 AGTTCAATCG
22648099 TAGACTGGGGATGAACTCCATATGCT
1 TAGACTGGGGATGAACTCCATATGCT
*
22648125 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGGATGAACTCCATATGC
22648150 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGGATGAACTCCATATGCT
Found at i:22648679 original size:26 final size:26
Alignment explanation
Indices: 22648650--22648702 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22648640 CTGGTCCGAT
22648650 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
22648676 CTTAGACATGGAATGACCTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
22648702 C
1 C
22648703 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22649520 original size:26 final size:26
Alignment explanation
Indices: 22649484--22649536 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22649474 CTAGTTCGAT
22649484 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
22649510 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22649536 C
1 C
22649537 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22650052 original size:26 final size:26
Alignment explanation
Indices: 22650023--22650075 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22650013 CCAGTCCGAT
22650023 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
22650049 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22650075 C
1 C
22650076 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22650988 original size:26 final size:26
Alignment explanation
Indices: 22650952--22651004 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22650942 CTGGTCTGAT
22650952 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22650978 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22651004 C
1 C
22651005 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22651371 original size:26 final size:26
Alignment explanation
Indices: 22651331--22651383 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22651321 TCGGTCTGAT
22651331 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
22651357 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
22651383 C
1 C
22651384 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:22651723 original size:158 final size:156
Alignment explanation
Indices: 22651356--22651855 Score: 458
Period size: 158 Copynumber: 3.2 Consensus size: 156
22651346 AACTCCGTAT
* *
22651356 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG-AATCGAGCGTGCATGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAT-GAGCGTGCAGGCGCTCA
* * * *
22651420 GCCGGCAGGAGAGGCAGAATGCGCAAGCTGGGGATCGGTCGGGT-CCCCCTGCGTACTGTCGATC
65 GCCGCCA-GAGAGGCAGAATG-GCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
** * **
22651484 ATGCTGCCGCAACCCTGGGTCCGGTCCAA
128 ACACTGCCACAACCCTCAGTCCGGTCCAA
* * * * * * *
22651513 TCTTAGAC-TGGAATGAACTCTGTATGCCTAAGTCAACCCATTAAACGAGCGTGCAGGCACTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAG
* * * * * *
22651577 CCGACCAAAGAGGCATAATGGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGTGTGCTGTCGGTCC
66 CCG-CCAGAGAGGCAGAATGGCAAGCTGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCA
* * *
22651642 CACTGCCATAACCCTCAGTCCGG-CTAGG
129 CACTGCCACAACCCTCAGTCCGGTCCA-A
* * * *
22651670 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAG
* * * * * * *
22651735 TCGGCCAGAGAGGTAGAATACGCAAGCTGGGAATTGGCCCGGTCCTCCCTGCGTGCTGTCG-T-T
66 -CCGCCAGAGAGGCAGAAT-GGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCA
* * *
22651798 C-CTGCTACAGGAACCCTCGGTCCGGTCTAA
129 CACTGC--CA-CAACCCTCAGTCCGGTCCAA
*
22651828 TCTTAGAC-TGAGAATGAACTCCGTATGC
1 GCTTAGACATG-GAATGAACTCCGTATGC
22651856 TTAGACATGG
Statistics
Matches: 276, Mismatches: 54, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
155 23 0.08
156 66 0.24
157 53 0.19
158 106 0.38
159 28 0.10
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAG
CCGCCAGAGAGGCAGAATGGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCACA
CTGCCACAACCCTCAGTCCGGTCCAA
Found at i:22651858 original size:26 final size:26
Alignment explanation
Indices: 22651829--22651879 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
22651819 CCGGTCTAAT
22651829 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
22651855 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
22651880 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22651979 original size:184 final size:184
Alignment explanation
Indices: 22651670--22652032 Score: 482
Period size: 184 Copynumber: 2.0 Consensus size: 184
22651660 TCCGGCTAGG
* * * *
22651670 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * *
22651735 TCGGCCAGAGAGGTAGAATACGCAAGCTGGGAATTGGCCCGGTCCTCCCTGCGTGCTGTCGTTCC
66 CCGGACAGAGAGGTAGAATACGCAAGCCGGGAATTGGCCCGATCCTCCCTGCGTGCTGTCGATCC
* * * *
22651800 TGCT-ACAGGAACCCTCGGTCCGGTCTAATCTTAGACT-GAGAATGAACTCCGTAT
131 TACTGAC-GCAACCCTAGGACCGGTCTAATCTTAGACTAG-GAATGAACTCCGTAT
* * *
22651854 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* *
22651919 CCGGACAGAGAGGTAGAATACGCAAGCCGCGG-ATTGGCTCGATCC-CTCTTGCGTGCTGTCGAT
66 CCGGACAGAGAGGTAGAATACGCAAGCCG-GGAATTGGCCCGATCCTC-CCTGCGTGCTGTCGAT
* *
22651982 CCTACTGTCGCAACCCTAGGACCGGTCTGATCTTAGACTAGGAATGAACTC
129 CCTACTGACGCAACCCTAGGACCGGTCTAATCTTAGACTAGGAATGAACTC
22652033 TGTACGCATA
Statistics
Matches: 155, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
183 1 0.01
184 150 0.97
185 4 0.03
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCGGACAGAGAGGTAGAATACGCAAGCCGGGAATTGGCCCGATCCTCCCTGCGTGCTGTCGATCC
TACTGACGCAACCCTAGGACCGGTCTAATCTTAGACTAGGAATGAACTCCGTAT
Found at i:22652210 original size:159 final size:158
Alignment explanation
Indices: 22651854--22652350 Score: 409
Period size: 158 Copynumber: 3.1 Consensus size: 158
22651844 AACTCCGTAT
* * * *
22651854 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTCAG
* * **
22651919 CCGGACAGAGAGGTAGAATACGCAAGCCGCGGATTGGCTCGATCCCTCTTGCGTGCTGTCGATCC
66 CCGGACAGAGAGGCAGAATACGCAAGCCGCGGATTGGCCCGATCCCTCTTGCGTGCTACCGATCC
* *
22651984 TACTGTCGCAACCCTAGGACCGGTCTGA
131 CACTGTCACAACCCTAGGACCGGTCTGA
* * * * * *
22652012 TCTTAGAC-TAGGAATGAACTCTGTACGCATAAGTCAACCCACGAAACGAGCGTGCAAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTCA
* * * * * *
22652076 GTCGGTC-GAAGAGGCATAATGCGCAAGCCAG-GGATTGGCCCGATCCTCTTTTGCGTTCTACCG
65 GCCGGACAG-AGAGGCAGAATACGCAAGCC-GCGGATTGGCCCGATCC-CTCTTGCGTGCTACCG
* * *
22652139 GTCCCACTG-CAACAACCCTCA-GTCCGGT-TGGG
127 ATCCCACTGTC-ACAACCCT-AGGACCGGTCT-GA
* ** *
22652171 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTCAG
* * * ** * * * * ** *
22652236 -CTGATCGGAGAGGTAGAATGTGCAAGCCGAGGATCGGCCC-AGTCCCCCCTGCGTGCTGTCGTT
66 CCGGA-CAGAGAGGCAGAATACGCAAGCCGCGGATTGGCCCGA-TCCCTCTTGCGTGCTACCGAT
** * * * *
22652299 CCTGCTGTCGCAACCCTCGGTCCGATCTGA
129 CCCACTGTCACAACCCTAGGACCGGTCTGA
*
22652329 TCTTAGAC-TGGGAATGAACTCC
1 GCTTAGACAT-GGAATGAACTCC
22652351 ATACGCTTAG
Statistics
Matches: 268, Mismatches: 55, Indels: 32
0.75 0.15 0.09
Matches are distributed among these distances:
157 3 0.01
158 143 0.53
159 119 0.44
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTCAG
CCGGACAGAGAGGCAGAATACGCAAGCCGCGGATTGGCCCGATCCCTCTTGCGTGCTACCGATCC
CACTGTCACAACCCTAGGACCGGTCTGA
Found at i:22652294 original size:501 final size:494
Alignment explanation
Indices: 22651135--22652435 Score: 1489
Period size: 501 Copynumber: 2.6 Consensus size: 494
22651125 GTCGGTCCTG
* ** * * *
22651135 CTGCCACAACCCTTGGTCCAGCTGGGGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTGCAACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
** * * * * *
22651200 CATAAAACGAGCGTGC-GGTGCTCAACCGATCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCT
66 CACGAAACGAGCGTGCGGGTGCTCAGCTGATCGGAGAGGTAGAATGCGCAAGCT-GGGATCGGCC
* * * * * *
22651264 CGATCCGCACTGCATGCTGCCAATCCTACTACTGGTCTTACTGCCGTAACCCTCGGTTCGGTCTG
130 CG-TCCCCCCTGCGTGCTG----TCGT--TCCT-G-C-TAC-G--G-AACCCTCGGTCCGGTCTG
22651329 ATCTTAGACTGGAAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
181 ATCTTAGACTGG-AATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
22651394 CCATGAATCGAGCGTGCATGTGCTCAGCCGGCAGGAGAGGCAGAATGCGCAAGCTGGGGATCGGT
245 CCATGAAACGAGCGTGCAGGTGCTCAGCCGGCAGGAGAGGCAGAATACGCAAGCCGCGGATCGGT
* * * *
22651459 CGGGTCCCCCTGCGTACTGTCGATCATGCTGCCGCAACCCTGGGTCCGGTCCAATCTTAGACTGG
310 CGGATCCCCCTGCGTACTGTCGATCATACTGCCGCAACCCTAGGACCGGTCCAATCTTAGACTGG
* * ** *
22651524 AATGAACTCTGTATGCCTAAGTCAACCCATTAAACGAGCGTGCAGGCACTGAGCCGACCAAAGAG
375 AATGAACTCTGTACGCATAAGTCAACCCACGAAACGAGCGTGCAAGCACTGAGCCGACCAAAGAG
** * * **
22651589 GCATAATGGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGTGTGCTGTCGGTCCCA
440 GCATAATGGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTACCGGTCCCA
* * *
22651644 CTGCCATAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCAACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * ** * * *
22651709 CACGAAATGGGCGTGCGGGCGCTCAG-TCGGCCAGAGAGGTAGAATACGCAAGCTGGGAATTGGC
66 CACGAAACGAGCGTGCGGGTGCTCAGCT-GATCGGAGAGGTAGAATGCGCAAGCTGGG-ATCGGC
* *
22651773 CCGGTCCTCCCTGCGTGCTGTCGTTCCTGCTACAGGAACCCTCGGTCCGGTCTAATCTTAGACTG
129 CC-GTCCCCCCTGCGTGCTGTCGTTCCTGCTAC-GGAACCCTCGGTCCGGTCTGATCTTAGACTG
*
22651838 AGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGA
192 -GAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA
* *
22651903 GCGTGCAGGTGCTCAGCCGGACA-GAGAGGTAGAATACGCAAGCCGCGGATTGGCTC-GATCCCT
256 GCGTGCAGGTGCTCAGCCGG-CAGGAGAGGCAGAATACGCAAGCCGCGGATCGG-TCGGATCCC-
* * * * **
22651966 CTTGCGTGCTGTCGATCCTACTGTCGCAACCCTAGGACCGGTCTGATCTTAGACTAGGAATGAAC
318 CCTGCGTACTGTCGATCATACTGCCGCAACCCTAGGACCGGTCCAATCTTAGACT-GGAATGAAC
* * ** *
22652031 TCTGTACGCATAAGTCAACCCACGAAACGAGCGTGCAAGCGCTGAGTCGGTCGAAGAGGCATAAT
382 TCTGTACGCATAAGTCAACCCACGAAACGAGCGTGCAAGCACTGAGCCGACCAAAGAGGCATAAT
** * * * *
22652096 GCGCAAGCCAGGGATTGGCCCGATCCTCTTTTGCGTTCTACCGGTCCCA
447 G-GCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTACCGGTCCCA
*
22652145 CTGCAACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCAACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* *
22652210 CACGAAACGAGCGTGCGGGTGCTCAGCTGATCGGAGAGGTAGAATGTGCAAGCCGAGGATCGGCC
66 CACGAAACGAGCGTGCGGGTGCTCAGCTGATCGGAGAGGTAGAATGCGCAAGCTG-GGATCGGCC
* * *
22652275 CAGTCCCCCCTGCGTGCTGTCGTTCCTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGG
130 C-GTCCCCCCTGCGTGCTGTCGTTCCTGCT-ACGGAACCCTCGGTCCGGTCTGATCTTAGACT-G
* * * * * *
22652340 GAATGAACTCCATACGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGA
192 GAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA
* * *
22652404 GCGTGCGGGCGCTCAGTCGGTC-GGAGAGGCAG
256 GCGTGCAGGTGCTCAGCCGG-CAGGAGAGGCAG
22652436 GCTGAAGAGG
Statistics
Matches: 674, Mismatches: 102, Indels: 40
0.83 0.12 0.05
Matches are distributed among these distances:
498 137 0.20
499 52 0.08
500 66 0.10
501 286 0.42
502 6 0.01
503 1 0.00
504 3 0.00
506 3 0.00
509 73 0.11
510 46 0.07
511 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (494 bp):
CTGCAACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGAGCGTGCGGGTGCTCAGCTGATCGGAGAGGTAGAATGCGCAAGCTGGGATCGGCCC
GTCCCCCCTGCGTGCTGTCGTTCCTGCTACGGAACCCTCGGTCCGGTCTGATCTTAGACTGGAAT
GAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTG
CAGGTGCTCAGCCGGCAGGAGAGGCAGAATACGCAAGCCGCGGATCGGTCGGATCCCCCTGCGTA
CTGTCGATCATACTGCCGCAACCCTAGGACCGGTCCAATCTTAGACTGGAATGAACTCTGTACGC
ATAAGTCAACCCACGAAACGAGCGTGCAAGCACTGAGCCGACCAAAGAGGCATAATGGCAAGCCA
GGGATCAGCCCGATCCCCCTCTGCGTGCTACCGGTCCCA
Found at i:22652736 original size:26 final size:26
Alignment explanation
Indices: 22652698--22652753 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
22652688 CCAGTCTGAT
*
22652698 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
22652724 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
22652750 CTTA
1 CTTA
22652754 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:22652884 original size:183 final size:184
Alignment explanation
Indices: 22652539--22652900 Score: 446
Period size: 183 Copynumber: 2.0 Consensus size: 184
22652529 TCTAGCTGGG
* * * ** * *
22652539 GCTTAGACATGGAATGAACTCCGTAGACCTAAGCCAACCCATGAAATGAGTATGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCCTAGACCTAAGCCAACCCACGAAACGAACATGCGGGCGCTCAA
* *
22652604 CCGGCCAGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCCCCACGTGCTGTCGATCC
66 CCAGCCAGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCACCACGTGCTGTCGATCC
*
22652669 TACTGTCACAATCTTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
131 TACTGTCACAATCTTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
22652723 GCTTAGACATGGAATGAACTCCCTATG-CTTAAGCCAACCCACG-AACGAACGTGCTGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTA-GACCTAAGCCAACCCACGAAACGAACATGCGGGCGCTCA
* * * * ** *
22652786 ACCAGCCAGAGAGGCAGAATTCGTAAGCTGGGGATCAGCCCGGTCCCCACTGCGTGCTGTTGATC
65 ACCAGCCAGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCACCACGTGCTGTCGATC
* * *
22652851 CTGTTACTG-CA-ACTCTTGGGTCGA-TCCGATCTTAGACTGGGAATGAACTC
130 C---TACTGTCACAATCTTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTC
22652901 TGGATGCCTA
Statistics
Matches: 151, Mismatches: 23, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
183 95 0.63
184 48 0.32
185 3 0.02
186 5 0.03
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTAGACCTAAGCCAACCCACGAAACGAACATGCGGGCGCTCAA
CCAGCCAGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCACCACGTGCTGTCGATCC
TACTGTCACAATCTTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:22653474 original size:26 final size:26
Alignment explanation
Indices: 22653438--22653490 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22653428 CTGGTCCGAT
*
22653438 CTTAAACTGGGAATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
22653464 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
22653490 C
1 C
22653491 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:22654300 original size:158 final size:155
Alignment explanation
Indices: 22653842--22654306 Score: 443
Period size: 157 Copynumber: 2.9 Consensus size: 155
22653832 AACTCCGTAT
* * * * * *
22653842 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATCGAACGTGCATGTGCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * *
22653907 TCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGTCGGGTCCCCCCTGCTTACTGTCGATCC
66 CCGACCGGAGAGGCAGAAT-CGCAAG-CAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTC-ATCC
22653972 TGCTGCC-GCAACCCTCGGTCTGGTTCGA
128 TGCTGCCAG-AACCCTCGGTCTGGTTCGA
* * * *
22654000 TCTTAGAC-TGGAATGAACT-CTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTGA
1 GCTTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * * * * *
22654063 GCCGATCGGAGAGGCATAATCGCAAGCCGGGGGTCAGCCCGGTCCCCCTCTGCGTGCTGTCGGTC
65 GCCGACCGGAGAGGCAGAATCGCAAG-CAGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTC-ATC
** * * * * *
22654128 CCACTACCACAACCCTCAGT-TCGGTTGGG
127 CTGCTGCCAGAACCCTCGGTCT-GGTTCGA
* * * *
22654157 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCAGGAAACGGGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
** * * * * *
22654222 CCGACCAAAGAGGTAGAATACGCAAGCTGGGAATTGGCCCGATCCTCCCTGCGTGCTGTCATTCC
66 CCGACCGGAGAGGCAGAAT-CGCAAGCAGGG-ATCGGCCCGGTCCCCCCTGCGTGCTGTCA-TCC
22654287 TGCTGCCAGAACCCTCGGTC
128 TGCTGCCAGAACCCTCGGTC
22654307 CAGTCTGATC
Statistics
Matches: 245, Mismatches: 52, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
156 24 0.10
157 101 0.41
158 101 0.41
159 19 0.08
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCGACCGGAGAGGCAGAATCGCAAGCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCATCCTGC
TGCCAGAACCCTCGGTCTGGTTCGA
Found at i:22654342 original size:158 final size:154
Alignment explanation
Indices: 22653851--22654342 Score: 466
Period size: 158 Copynumber: 3.1 Consensus size: 154
22653841 TGCTTAAACA
* * * * *
22653851 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATCGAACGTGCATGTGCTCAGTCGACCGGA
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCGGA
* * * *
22653916 GAGGCAGAATGCGCAAGTCAGGGATCGGTCGGGTCCCCCCTGCTTACTGTCGATCCTGCTGCC-G
66 GAGGCAGAAT-CGCAAG-CAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTC-ATCCTGCTGCCAG
*
22653980 CAACCCTCGGTCTGGTTCGATCTTAGAC
128 -AACCCTCGGTCCGGTTCGATCTTAGAC
* * * * *
22654008 TGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTGAGCCGATCGGA
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCGGA
* * * * * ** * *
22654073 GAGGCATAATCGCAAGCCGGGGGTCAGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCACTACCAC
66 GAGGCAGAATCGCAAG-CAGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTC-ATCCTGCTGCCAG
* * * **
22654138 AACCCTCAGTTCGGTTGGGGCTTAGAC
128 AACCCTCGGTCCGGTTCGATCTTAGAC
* * * * * **
22654165 ATGGAATGAACTCCTTATGCCTAAGCCAACCCAGGAAACGGGCGTGCGGGCGCTTAGCCGACCAA
1 -TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCGG
* * * * *
22654230 AGAGGTAGAATACGCAAGCTGGGAATTGGCCCGATCCTCCCTGCGTGCTGTCATTCCTGCTGCCA
65 AGAGGCAGAAT-CGCAAGCAGGG-ATCGGCCCGGTCCCCCCTGCGTGCTGTCA-TCCTGCTGCCA
*
22654295 GAACCCTCGGTCCAG-TCTGATCTTAGAC
127 GAACCCTCGGTCCGGTTC-GATCTTAGAC
*
22654323 TGAGAATGAACTTCGTATGC
1 TG-GAATGAACTCCGTATGC
22654343 TTAGACATGG
Statistics
Matches: 266, Mismatches: 61, Indels: 15
0.78 0.18 0.04
Matches are distributed among these distances:
156 22 0.08
157 106 0.40
158 121 0.45
159 17 0.06
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.21
Consensus pattern (154 bp):
TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCGGA
GAGGCAGAATCGCAAGCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCATCCTGCTGCCAGAAC
CCTCGGTCCGGTTCGATCTTAGAC
Done.