Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 222 of 402
Found at i:22654355 original size:26 final size:26
Alignment explanation
Indices: 22654316--22654366 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
22654306 CCAGTCTGAT
*
22654316 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
22654342 CTTAGACATG-GAATGAACTCCGTAT
1 CTTAGAC-TGAGAATGAACTCCGTAT
22654367 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:22660645 original size:26 final size:26
Alignment explanation
Indices: 22660607--22660659 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22660597 GGCTCAAAAT
22660607 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22660633 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22660659 C
1 C
22660660 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22661115 original size:158 final size:158
Alignment explanation
Indices: 22660633--22661135 Score: 451
Period size: 158 Copynumber: 3.2 Consensus size: 158
22660623 ACTCCGTATG
* * * *
22660633 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAGCAAGCGTGCAGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * * * * *
22660697 CTGGTAGGACAGGCAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCCTTATGTGCTATCGATC
65 CCGACAGGAGAGGCAAAATGCGAAAGCTAGGGATCAGCCCGATCCCCCC-TGTGTGCTGTCGATC
* * *
22660762 CTACTGCCACAGCCATCGGTCCGGTCTC-AT
129 CTGCTGCCACAACCCTCGGTCCGGT-TCGAT
* * * * * * * *
22660792 CTTAGACTGGGAATGAACT-CCTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGCACTGAGT
1 CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
22660856 CGATC-GAAGAGG-AATAATGCGCAAAGCTAAGGATCAGCTCGGTCTCCCTCTGTGTGCTGTCGG
66 CGA-CAGGAGAGGCAA-AATGCG-AAAGCTAGGGATCAGCCCGATC-CCCCCTGTGTGCTGTCGA
* *** * **
22660919 TCCCGCTGCCACAACCCTCGGTCCAACTGGGG
127 TCCTGCTGCCACAACCCTCGGTCCGGTTCGAT
* * *
22660951 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACGCACGAAACGGGCATGCGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
22661015 CCGACAGGAGAGGCAAAATTCGTAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
65 CCGACAGGAGAGGCAAAATGCGAAAGCTAGGGATCAGCCCGATCCCCCCTGTGTGCTGTCGATCC
* *
22661080 TGCTGTCGCAACCCTCGGTCCGGTTCGAT
130 TGCTGCCACAACCCTCGGTCCGGTTCGAT
* *
22661109 CCTAGACTAGGAATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCCTATGC
22661136 TTAGAATGAG
Statistics
Matches: 263, Mismatches: 70, Indels: 23
0.74 0.20 0.06
Matches are distributed among these distances:
157 1 0.00
158 108 0.41
159 99 0.38
160 53 0.20
161 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACAGGAGAGGCAAAATGCGAAAGCTAGGGATCAGCCCGATCCCCCCTGTGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGGTTCGAT
Found at i:22662005 original size:26 final size:26
Alignment explanation
Indices: 22661976--22662028 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22661966 CCGATCTGAT
22661976 CTTAGACTA-GGAATGAACTCCGTATG
1 CTTAGACTACGG-ATGAACTCCGTATG
22662002 CTTAGACTACGGATGAACTCCGTATG
1 CTTAGACTACGGATGAACTCCGTATG
22662028 C
1 C
22662029 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTACGGATGAACTCCGTATG
Found at i:22662753 original size:25 final size:26
Alignment explanation
Indices: 22662710--22662761 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
22662700 GGCTCAAAAT
*
22662710 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
22662736 CTTAGACT-GGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
22662761 C
1 C
22662762 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:22663090 original size:159 final size:158
Alignment explanation
Indices: 22662735--22663235 Score: 397
Period size: 159 Copynumber: 3.2 Consensus size: 158
22662725 AACTCTGTAT
* ** ** * *
22662735 GCTTAGACTGGAATAAACTCTGTATGCCTAGGCCAACCCACGAAACGAGCGTGTGGGCGCTCAGT
1 GCTTAGACTGGAATGAACTCCATATGCCTAATCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
22662800 CGGCCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCAGTCCCTTCCTGTATGTTGTCAATCC
66 CGACCGAAAAGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCTCCTGCATGTTGTCAATCC
* * *
22662865 TACTGCCACAACCCTCGGTCTGGTCTGA
131 CACTACCACAACCCTCGATCTGGTCTGA
* * * * * * *
22662893 TCTTAGATTGGTAATGAACTCCATATGCATAAGT-CAACCCATGAAACGAGTGTGCGGGCGTTGA
1 GCTTAGACTGG-AATGAACTCCATATGCCTAA-TCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* *** *
22662957 GCCGACCGAAAAGGCATAATGCACAAGCCGGGGATCGGTTC-GATGCCCCT-CTGCATGTTGTCG
64 GCCGACCGAAAAGGCAGAATGCACAAGCCGGGGATCGACCCAG-T-CCCCTCCTGCATGTTGTCA
* *
22663020 GTCCCACTACCACAACCCTCGATCTGG-CTAGG
127 ATCCCACTACCACAACCCTCGATCTGGTCT-GA
* * * *
22663052 GCTTAGACATGGAATGAACTCCCTATGCCTAATCCAACCTACGAAACGGGCGTGCAGGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCATATGCCTAATCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * * *
22663117 TCGACC-AGAGAGGC-GAATGCGCAAGTCGAGGATCGACCCGGTCCCC-CTTGCGTGCTGCCGAT
65 CCGACCGA-AAAGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCTCCTGCATGTTGTCAAT
** ** * * *
22663179 CCTGCTACCGTAACCCTCGGTCCGGTCCGA
129 CCCACTACCACAACCCTCGATCTGGTCTGA
*
22663209 TCTTAGACTGGGAATGAACT-CATATGC
1 GCTTAGACT-GGAATGAACTCCATATGC
22663236 TCAGACTGGG
Statistics
Matches: 266, Mismatches: 65, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
156 7 0.03
157 51 0.19
158 34 0.13
159 167 0.63
160 7 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACTGGAATGAACTCCATATGCCTAATCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGAAAAGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCTCCTGCATGTTGTCAATCC
CACTACCACAACCCTCGATCTGGTCTGA
Found at i:22664837 original size:26 final size:26
Alignment explanation
Indices: 22664799--22664851 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22664789 GGCTCAAAAT
*
22664799 CTTAGACTGGGAATGAAGTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22664825 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
22664851 C
1 C
22664852 CTAATCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22665341 original size:26 final size:26
Alignment explanation
Indices: 22665261--22665355 Score: 79
Period size: 26 Copynumber: 3.7 Consensus size: 26
22665251 CTAAGACTTC
* *
22665261 GAATGAACTCCATATGCTTAG-ACTGG
1 GAATGAACTCCGTATGCTTAGCA-TAG
* * * *
22665287 GGATGAACTCTGTATTCCTA-CACTAG
1 GAATGAACTCCGTATGCTTAGCA-TAG
*
22665313 GAATGAACTCTGTATGCTTAGCCAT-G
1 GAATGAACTCCGTATGCTTAG-CATAG
22665339 GAATGAACTCCGTATGC
1 GAATGAACTCCGTATGC
22665356 CTAAGCCAAC
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
26 53 0.95
27 1 0.02
28 2 0.04
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (26 bp):
GAATGAACTCCGTATGCTTAGCATAG
Found at i:22666563 original size:26 final size:26
Alignment explanation
Indices: 22666525--22666577 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22666515 GGCTCAAAAT
*
22666525 CTTAGACTGGGAATGAAGTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22666551 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
22666577 C
1 C
22666578 CTAATCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22666774 original size:26 final size:26
Alignment explanation
Indices: 22666694--22666788 Score: 79
Period size: 26 Copynumber: 3.7 Consensus size: 26
22666684 CTAAGACTTC
* *
22666694 GAATGAACTCCATATGCTTAG-ACTGG
1 GAATGAACTCCGTATGCTTAGCA-TAG
* * * *
22666720 GGATGAACTCTGTATTCCTA-CACTAG
1 GAATGAACTCCGTATGCTTAGCA-TAG
*
22666746 GAATGAACTCTGTATGCTTAGCCAT-G
1 GAATGAACTCCGTATGCTTAG-CATAG
22666772 GAATGAACTCCGTATGC
1 GAATGAACTCCGTATGC
22666789 CTAAGCCAAC
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
26 53 0.95
27 1 0.02
28 2 0.04
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (26 bp):
GAATGAACTCCGTATGCTTAGCATAG
Found at i:22668302 original size:159 final size:158
Alignment explanation
Indices: 22667947--22668646 Score: 620
Period size: 158 Copynumber: 4.4 Consensus size: 158
22667937 GGCCCAAAAT
* * * * *
22667947 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGCTAACCTATGAAACGAGCGTCCGGGTGCTCAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
22668011 CCGGCC-AGAGAGGCAAAATGCGTAAGTCGGGGATCGGCCCGGTCCCCC-CCGCATGCTGTCGAT
65 CC-ACCGA-AGAGGCATAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTCCGCATGCTGCCGAT
* * * * **
22668074 CCTACTGCCGCAACCCTCAGTTCGATCT-GAT
128 CCCACTGCCACAACCCTCGGTCCGA-CTGGGG
* * * ** * *
22668105 CTTAGAC-TGGGAATGAACTCCGTATACATAAGTTAACCCATGAAACGAGCGTGCGAGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * ** * **
22668169 CCGACCGAAGAGGCATAATGGGTGAGCCGAGGATCGGCTTGGTCCCCCTGCGCATGCTGTTGATC
65 CC-ACCGAAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTCCGCATGCTGCCGATC
* * * *
22668234 CCACTACCACAACCCTTGGTCTGGCTGGGG
129 CCACTGCCACAACCCTCGGTCCGACTGGGG
* * * * *
22668264 CTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** *
22668329 TCATCGAAGAGGCAGAATGCATAAGTCGGGGATCAGCTCGGT-CCCCTCCGTGTGCTACCGATCC
66 -CACCGAAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTCCGCATGCTGCCGATCC
*
22668393 CACTGCCACAACCCTCGGTCCGACTGTGG
130 CACTGCCACAACCCTCGGTCCGACTGGGG
* * * * * * *
22668422 CTTAGACATGGAATGAACTCCTTATGACTAAGCCAACCCATGAAACGAGAGTACGGACGTTGAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** *
22668487 CAGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTGTGTGCTGCCGTTCC
66 CA-CCGAAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTCCGCATGCTGCCGATCC
* * * *
22668552 CGCTGCCATAACCATTGGTCCGACTGGGG
130 CACTGCCACAACCCTCGGTCCGACTGGGG
* * * * * * *
22668581 CTGACACATGGAATGAACTCCCTATGCCTAAGGCAACCCATGAAATGGGCATACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
22668646 C
66 C
22668647 GGTTGGAGAG
Statistics
Matches: 435, Mismatches: 100, Indels: 13
0.79 0.18 0.02
Matches are distributed among these distances:
157 2 0.00
158 220 0.51
159 211 0.49
160 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CACCGAAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTCCGCATGCTGCCGATCCC
ACTGCCACAACCCTCGGTCCGACTGGGG
Found at i:22668453 original size:158 final size:158
Alignment explanation
Indices: 22667947--22668731 Score: 607
Period size: 158 Copynumber: 5.0 Consensus size: 158
22667937 GGCCCAAAAT
* * * * * * *
22667947 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGCTAACCTATGAAACGAGCGTCCGGGTGCTCAG
1 CTTAGACAT-GGAATGAACTCCCTATGACTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAG
** * * *
22668011 CCGGCCAGAGAGGCAAAATGCGTAAGTCGGGGATCGGCCCGGTCCCCC-CCGCATGCTGTCGATC
65 CCATCGA-AGAGGCATAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTCCGCATGCTGCCGATC
* * * * **
22668075 CTACTGCCGCAACCCTCAGTTCGATCT-GAT
129 CCACTGCCACAACCCTCGGTCCGA-CTGGGG
* ** *
22668105 CTTAGAC-TGGGAATGAACTCCGTAT-ACATAAGTTAACCCATGAAACGAGCGTGCGAGCGCTGA
1 CTTAGACAT-GGAATGAACTCCCTATGAC-TAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGA
* * * * * ** * **
22668168 GCCGACCGAAGAGGCATAATGGGTGAGCCGAGGATCGGCTTGGTCCCCCTGCGCATGCTGTTGAT
64 GCC-ATCGAAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTCCGCATGCTGCCGAT
* * * *
22668233 CCCACTACCACAACCCTTGGTCTGGCTGGGG
128 CCCACTGCCACAACCCTCGGTCCGACTGGGG
* * * * * * *
22668264 CTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAAC
1 CTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
* * * * ** *
22668329 TCATCGAAGAGGCAGAATGCATAAGTCGGGGATCAGCTCGGT-CCCCTCCGTGTGCTACCGATCC
66 -CATCGAAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTCCGCATGCTGCCGATCC
*
22668393 CACTGCCACAACCCTCGGTCCGACTGTGG
130 CACTGCCACAACCCTCGGTCCGACTGGGG
* * * * *
22668422 CTTAGACATGGAATGAACTCCTTATGACTAAGCCAACCCATGAAACGAGAGTACGGACGTTGAGC
1 CTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
* * * * ** *
22668487 CAGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTGTGTGCTGCCGTTCC
66 CA-TCGAAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTCCGCATGCTGCCGATCC
* * * *
22668552 CGCTGCCATAACCATTGGTCCGACTGGGG
130 CACTGCCACAACCCTCGGTCCGACTGGGG
* * * * * * * * *
22668581 CTGACACATGGAATGAACTCCCTATGCCTAAGGCAACCCATGAAATGGGCATACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
* * * * * * * * * **
22668646 CGGTTGGAGAGGTAGAATGCGTAAG-CCGGGAT-GGACCCGATCCCCCT-TGCGTGCTATCGATC
66 C-ATCGAAGAGGCATAATGCGTAAGTCGGGGATCGG-CCCGGTCCCCCTCCGCATGCTGCCGATC
* * *
22668708 CTACTACCGCAACCCTCGGTCCGA
129 CCACTGCCACAACCCTCGGTCCGA
22668732 TCCGATCTTA
Statistics
Matches: 497, Mismatches: 119, Indels: 23
0.78 0.19 0.04
Matches are distributed among these distances:
157 32 0.06
158 233 0.47
159 229 0.46
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
CATCGAAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTCCGCATGCTGCCGATCCC
ACTGCCACAACCCTCGGTCCGACTGGGG
Found at i:22668665 original size:317 final size:317
Alignment explanation
Indices: 22667956--22668762 Score: 754
Period size: 317 Copynumber: 2.5 Consensus size: 317
22667946 TCTTAGACTA
* * * * * * *
22667956 GGAATGAACTCCGTATGCCTAA-GCTAACCTATGAAACGAGCGTCCGGGTGCTCAGCCGGCCAGA
1 GGAATGAACTCCCTATGCCTAAGGC-AACCCATGAAACGGGCGTACGGGCGCTCAGCCGGTCGGA
* * ** * *
22668020 GAGGCAAAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCCCGCATGCTGTCGATCCTACTGCCGC
65 GAGGCAGAATGCGTAAGTCGGGGATCAGCCCGGTCCCCCCCGCATGCTACCGATCCCACTGCCAC
* **
22668085 AACCCTCAGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATACATAAGTTAACCCATGAAA
130 AACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATACATAAGCCAACCCATGAAA
* * * ** * **
22668150 CGAGCGTGCGAGCGCTGAGCCGACCGAAGAGGCATAATGGGTGAGCCGAGGATCGGCTTGGTCCC
195 CGAGAGTACGAGCGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCC
** * * * * **
22668215 CCTGCGCATGCTGTTGATCCCACTACCACAACCCTTGGTCTGGCTGGGGCTTAGGCAT
260 CCTGCGCATGCTGCCGATCCCACTACCACAACCATTGGTCCGACTGGGGCTGACACAT
* * * * * * *
22668273 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAACTC-ATCGAA
1 GGAATGAACTCCCTATGCCTAAGGCAACCCATGAAACGGGCGTACGGGCGCTCAGC-CGGTCGGA
* * * **
22668337 GAGGCAGAATGCATAAGTCGGGGATCAGCTCGGTCCCCTCCGTGTGCTACCGATCCCACTGCCAC
65 GAGGCAGAATGCGTAAGTCGGGGATCAGCCCGGTCCCCCCCGCATGCTACCGATCCCACTGCCAC
* *
22668402 AACCCTCGGTCCGA-CTG-TGGCTTAGACAT-GGAATGAACTCCTTATGAC-TAAGCCAACCCAT
130 AACCCTCAGTCCGATCTGAT--CTTAGAC-TGGGAATGAACTCCGTAT-ACATAAGCCAACCCAT
* * * * *
22668463 GAAACGAGAGTACG-GACGTTGAGCC-AGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCC
191 GAAACGAGAGTACGAG-CGCTGAGCCGA-CCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCC
** * * * *
22668526 GGTCCCCCT-CTGTGTGCTGCCGTTCCCGCTGCCATAACCATTGGTCCGACTGGGGCTGACACAT
254 GGTCCCCCTGC-GCATGCTGCCGATCCCACTACCACAACCATTGGTCCGACTGGGGCTGACACAT
* * *
22668590 GGAATGAACTCCCTATGCCTAAGGCAACCCATGAAATGGGCATACGGGCGCTCAGCCGGTTGGAG
1 GGAATGAACTCCCTATGCCTAAGGCAACCCATGAAACGGGCGTACGGGCGCTCAGCCGGTCGGAG
* * * * ** * * * * *
22668655 AGGTAGAATGCGTAAG-CCGGGAT-GGACCCGATCCCCCTTGCGTGCTATCGATCCTACTACCGC
66 AGGCAGAATGCGTAAGTCGGGGATCAG-CCCGGTCCCCCCCGCATGCTACCGATCCCACTGCCAC
* * * ** *
22668718 AACCCTCGGTCCGATCCGATCTTAGGCTCAGAATGAACTTCGTAT
130 AACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
22668763 GCTTAGACTA
Statistics
Matches: 391, Mismatches: 85, Indels: 29
0.77 0.17 0.06
Matches are distributed among these distances:
315 3 0.01
316 73 0.19
317 309 0.79
318 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (317 bp):
GGAATGAACTCCCTATGCCTAAGGCAACCCATGAAACGGGCGTACGGGCGCTCAGCCGGTCGGAG
AGGCAGAATGCGTAAGTCGGGGATCAGCCCGGTCCCCCCCGCATGCTACCGATCCCACTGCCACA
ACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATACATAAGCCAACCCATGAAAC
GAGAGTACGAGCGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCC
CTGCGCATGCTGCCGATCCCACTACCACAACCATTGGTCCGACTGGGGCTGACACAT
Found at i:22669492 original size:26 final size:26
Alignment explanation
Indices: 22669454--22669506 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22669444 GGCTCAAAAT
22669454 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22669480 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
22669506 C
1 C
22669507 CTAATCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22669882 original size:159 final size:158
Alignment explanation
Indices: 22669555--22669957 Score: 379
Period size: 159 Copynumber: 2.5 Consensus size: 158
22669545 CGATCGAAGA
* * * *
22669555 GGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTTAGTCTGGTCTGATCTTAGA
1 GGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCACAACCCTTAGTCTGGTCTGAGCTTAGA
* * *
22669620 CTGGGAATGAACTCCGTATGCAAAAGTCAACCCACAAAATGAGCGTGCGGGCGCTGACTCGACCG
66 CTGGGAATGAACTCCGTATGCAAAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCACTCGACCG
* *
22669685 AAGAGGCATAATGCGCAAGCCGAGGATC
131 AAGAGGCAGAATGCACAAGCCGAGGATC
*** * * *
22669713 GGCATAGTCCCCCTCTGTGTGCTG-CTGGTCCTGCTACCACAACCCTCT-GTCTGG-CTGGGGCT
1 GGCCCGGTCCCCC-CTGCGTGCTGTC-GATCCTGCTACCACAACCCT-TAGTCTGGTCT-GAGCT
* ** * * *
22669775 TAGACAT-GGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGC-
62 TAGAC-TGGGAATGAACTCCGTATGCAAAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA-CT
* *
22669838 C-AGTCGAAGAGGCAGAATGCATAAGCC-AGGGATC
125 CGA-CCGAAGAGGCAGAATGCACAAGCCGA-GGATC
* * * * * * * * * * *
22669872 GGCCCGGTCCCCCCTACGTGTTATCGATCTTGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGA
1 GGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCACAACCCTTAGTCTGGTCTGAGCTTAGA
22669937 CTGGGAATGAACTCCGTATGC
66 CTGGGAATGAACTCCGTATGC
22669958 TTACACTGGG
Statistics
Matches: 192, Mismatches: 41, Indels: 24
0.75 0.16 0.09
Matches are distributed among these distances:
157 1 0.01
158 65 0.34
159 123 0.64
160 3 0.02
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.21
Consensus pattern (158 bp):
GGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCACAACCCTTAGTCTGGTCTGAGCTTAGA
CTGGGAATGAACTCCGTATGCAAAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCACTCGACCG
AAGAGGCAGAATGCACAAGCCGAGGATC
Found at i:22669960 original size:26 final size:26
Alignment explanation
Indices: 22669931--22670061 Score: 174
Period size: 26 Copynumber: 5.0 Consensus size: 26
22669921 CCGATCCGAT
22669931 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
22669957 CTTACACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22669983 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
22670009 CCTAGACTGGGAAGGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
22670035 CTTAGCCAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22670061 C
1 C
22670062 CTAAGCCAAC
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
26 93 0.99
27 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22670530 original size:26 final size:26
Alignment explanation
Indices: 22670508--22670602 Score: 102
Period size: 26 Copynumber: 3.7 Consensus size: 26
22670498 CTAAGACTTC
22670508 GAATGAACTCCGTATGCTTAGACTGG
1 GAATGAACTCCGTATGCTTAGACTGG
* * *
22670534 GGATGAACTTCGTATGCCTAGACTGG
1 GAATGAACTCCGTATGCTTAGACTGG
* ** *
22670560 GAAGGAACTTTGTATGCTTAGCCAT-G
1 GAATGAACTCCGTATGCTTAGAC-TGG
*
22670586 GAATGAACTCTGTATGC
1 GAATGAACTCCGTATGC
22670603 CTAAGCCAAC
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 57 0.98
27 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.28
Consensus pattern (26 bp):
GAATGAACTCCGTATGCTTAGACTGG
Found at i:22670981 original size:159 final size:157
Alignment explanation
Indices: 22670582--22671003 Score: 406
Period size: 159 Copynumber: 2.7 Consensus size: 157
22670572 TATGCTTAGC
* ** *
22670582 CATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCAGTCGACCG
1 CATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGTCGGCCG
* * * *** * * * *
22670647 GAGAAGTAGAATGCACGAGCCAGGCATTGGCCCGGTCCCCCTACGTGCTGCCGATCCTGCTGCCG
66 GAGAGGTAGAATGCGCAAGCCAGGCACCAGCCCGGTCCCCCTACATGCTGCCGATCCCGCTACCA
* * * *
22670712 CAACCTTCGGTCTGGTCTGATGTTAGA
131 CAACCCTCAGTCCGGTCTGATGTTACA
* * * * *
22670739 C-TGGGAATGAACTCTGTATGCATAAGTCAACCCGCGAAACGAGCGTGCGGGTGCTGAG-CTGGC
1 CAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGTC-GGC
* * * * * * * *
22670802 CGAAGAGGCATAATGCGCAAGTCGGGGACCAGCCGGGTCCCCCTCTACATGCTGCCGGTCCCGCT
64 CGGAGAGGTAGAATGCGCAAGCCAGGCACCAGCCCGGT-CCCC-CTACATGCTGCCGATCCCGCT
22670867 ACCACAACCCTCAGTCCGG-CTGGA-GCTTACA
127 ACCACAACCCTCAGTCCGGTCT-GATG-TTACA
* * *
22670898 CATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAATG-GACGTGCGGGTGCTTAGTCGGTC
1 CATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAG-CGTGCGGGTGCTCAGTCGGCC
* *
22670962 GGAGAGGTAGAATGCGCAAGCCAGGGATC-GACCCGGTCCCCC
65 GGAGAGGTAGAATGCGCAAGCCAGGCACCAG-CCCGGTCCCCC
22671004 CTGCGTGCTG
Statistics
Matches: 210, Mismatches: 45, Indels: 20
0.76 0.16 0.07
Matches are distributed among these distances:
156 2 0.01
157 76 0.36
158 13 0.06
159 117 0.56
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (157 bp):
CATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGTCGGCCG
GAGAGGTAGAATGCGCAAGCCAGGCACCAGCCCGGTCCCCCTACATGCTGCCGATCCCGCTACCA
CAACCCTCAGTCCGGTCTGATGTTACA
Found at i:22670983 original size:552 final size:541
Alignment explanation
Indices: 22669969--22671105 Score: 1567
Period size: 552 Copynumber: 2.1 Consensus size: 541
22669959 TACACTGGGG
22669969 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAGACTGGGAAGGAACTCTGTAT
1 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAGACTGGGAAGGAACTCTGTAT
22670034 GCTTAGCCATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCCGGAGA
66 GCTTAGCCATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCCGGAGA
* * * * *
22670099 AGCAGAATGCACGAGCCGGGGATTGGCCCGGCCCCCTCTGCGTGCTGTCGATCCTGCTGTCACAA
131 AGCAGAATGCACGAGCCAGGCATTGGCCCGGCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAA
* * * * * *
22670164 CCCTCGGTCTGGTCCGATGTTTGACGGAAATTAACTCTATATGCATAAGTGAATCCATAAAACTA
196 CCCTCGGTCTGGTCCGATGTTAGACGGAAATGAACTCTATATGCATAAGTCAACCCACAAAACGA
* * *
22670229 GCGTACGGGTGTTGAGTTGGCCGAAGAGGCATAATGCGCAAGTTGAGGACCAGCCCGATCCCCCT
261 GCGTACGGGTGCTGAGCTGGCCGAAGAGGCATAATGCGCAAGTCGAGGACCAGCCCGATCCCCCT
* * * * * * *
22670294 CTGCGTGCTGCTGGCCCCGTTGCCACAACCCTCGGTCCGGCTGGGGCTTACACATGGAATGAACT
326 CTACATGCTGCCGGCCCCGCTACCACAACCCTCAGTCCGGCTGGAGCTTACACATGGAATGAACT
* * *
22670359 CCCTATGCCTAAGCCAACCCACGAAACGGGCGTATGAGTGCTCAGCCGGTCGAAGAGGCCGAATG
391 CCCTATGCCTAAGCCAACCCACGAAACGGACGTACGAGTGCTCAGCCGGTCGAAGAGGCAGAATG
* * * * *
22670424 TGCAAGCCAGGGATCGGCCCGGTCCCCCCTACATGCTGTCGATCTTGCTGCCACAACCCTCGGTC
456 CGCAAGCCAGGGATCGACCCGGTCCCCCCTACATGCTGTCGATCCTGCAGCCACAACCCTCGATC
* *
22670489 C-GATCTAATCTAAGACTTCGA
521 CAG-TCCAATCTAAGACTGCGA
* *
22670510 ATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAGACTGGGAAGGAACTTTGTAT
1 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAGACTGGGAAGGAACTCTGTAT
*
22670575 GCTTAGCCATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCAG
66 GCTTAGCCATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGC--G-----A-
* *
22670640 TCGACCGGAGAAGTAGAATGCACGAGCCAGGCATTGGCCCGGTCCCC-CTACGTGCTGCCGATCC
123 --G-CCGGAGAAGCAGAATGCACGAGCCAGGCATTGGCCCGGCCCCCTCTACGTGCTGCCGATCC
* * * * *
22670704 TGCTGCCGCAACCTTCGGTCTGGTCTGATGTTAGACTGGGAATGAACTCTGTATGCATAAGTCAA
185 TGCTGCCACAACCCTCGGTCTGGTCCGATGTTAGAC-GGAAATGAACTCTATATGCATAAGTCAA
* * * *
22670769 CCCGCGAAACGAGCGTGCGGGTGCTGAGCTGGCCGAAGAGGCATAATGCGCAAGTCGGGGACCAG
249 CCCACAAAACGAGCGTACGGGTGCTGAGCTGGCCGAAGAGGCATAATGCGCAAGTCGAGGACCAG
* * *
22670834 CCGGGTCCCCCTCTACATGCTGCCGGTCCCGCTACCACAACCCTCAGTCCGGCTGGAGCTTACAC
314 CCCGATCCCCCTCTACATGCTGCCGGCCCCGCTACCACAACCCTCAGTCCGGCTGGAGCTTACAC
* * * * * * *
22670899 ATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAATGGACGTGCGGGTGCTTAGTCGGTCGG
379 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTACGAGTGCTCAGCCGGTCGA
* * * *
22670964 AGAGGTAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCAGCCG
444 AGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACATGCTGTCGATCCTGCAGCCA
* *
22671029 CAACCCTCGATCCAGTCCAATCTTAGACTGGGA
509 CAACCCTCGATCCAGTCCAATCTAAGACTGCGA
* * *
22671062 ATGAACTTCGTATGCTTAGATTGGGTATGAACTCCGTATGCCTA
1 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTA
22671106 AGTCAACCAC
Statistics
Matches: 518, Mismatches: 65, Indels: 15
0.87 0.11 0.03
Matches are distributed among these distances:
541 117 0.23
543 1 0.00
548 1 0.00
551 47 0.09
552 351 0.68
553 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (541 bp):
ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAGACTGGGAAGGAACTCTGTAT
GCTTAGCCATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCCGGAGA
AGCAGAATGCACGAGCCAGGCATTGGCCCGGCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAA
CCCTCGGTCTGGTCCGATGTTAGACGGAAATGAACTCTATATGCATAAGTCAACCCACAAAACGA
GCGTACGGGTGCTGAGCTGGCCGAAGAGGCATAATGCGCAAGTCGAGGACCAGCCCGATCCCCCT
CTACATGCTGCCGGCCCCGCTACCACAACCCTCAGTCCGGCTGGAGCTTACACATGGAATGAACT
CCCTATGCCTAAGCCAACCCACGAAACGGACGTACGAGTGCTCAGCCGGTCGAAGAGGCAGAATG
CGCAAGCCAGGGATCGACCCGGTCCCCCCTACATGCTGTCGATCCTGCAGCCACAACCCTCGATC
CAGTCCAATCTAAGACTGCGA
Found at i:22671086 original size:26 final size:26
Alignment explanation
Indices: 22671050--22671102 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22671040 CCAGTCCAAT
*
22671050 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
22671076 CTTAGATTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22671102 C
1 C
22671103 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22671797 original size:28 final size:26
Alignment explanation
Indices: 22671758--22671810 Score: 79
Period size: 28 Copynumber: 2.0 Consensus size: 26
22671748 GGCCCAAAAT
22671758 CTTAGACTGGAATGAACTCCATATGG
1 CTTAGACTGGAATGAACTCCATATGG
*
22671784 CTTAGGACGTGGAATGAACTCTATATG
1 CTTA-GAC-TGGAATGAACTCCATATG
22671811 CCTAAACTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 4 0.17
27 3 0.12
28 17 0.71
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAATGAACTCCATATGG
Found at i:22673402 original size:158 final size:156
Alignment explanation
Indices: 22673231--22673636 Score: 374
Period size: 157 Copynumber: 2.6 Consensus size: 156
22673221 CCGGTCCTAT
** * * ** * *
22673231 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGTGTGCAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCATAAGCCAA-CCACGAAACGAGCATGCAGGCACTCAG
* * * * * * * **
22673295 CTGATCGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCTCTA-CTGCTATCGGTC
64 CCGATCGAAGAGGCAGAATGCGCAAGCCGGGCATCAGCCCGGTCCCCC-CGATCTGCTA-CCATC
** *
22673359 CCGTTACCACAACCCTC-GATCTGGCTGGGG
127 CCACTACCACAACCCTCAG-TCCGGCTGGGG
* * * * *
22673389 CTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCATGAAACGGGCATGCGGGCACTCAGCC
1 CTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCACGAAACGAGCATGCAGGCACTCAGCC
* *
22673454 GGTCGAAGAGGCAGAATGCGCAAGCCGGGCATCAGCCCGGTCCCCCCGATGTGCTACCATCCCAC
66 GATCGAAGAGGCAGAATGCGCAAGCCGGGCATCAGCCCGGTCCCCCCGATCTGCTACCATCCCAC
*
22673519 TACCACAACCCTCAGTCCGGCTGTGG
131 TACCACAACCCTCAGTCCGGCTGGGG
* * **
22673545 CTTAGACATGGAATGAACTCCCTATG-ACTAAGCCAACCCATG-AACGGGCATGGCAGGGTGCTC
1 CTTAGACATGGAATGAACTCCCTATGCA-TAAGCCAA-CCACGAAACGAGCAT-GCA-GGCACTC
* *
22673608 AGTCGGTC-AGAGAGGCAGAATGCGCAAGC
62 AGCCGATCGA-AGAGGCAGAATGCGCAAGC
22673637 TGGGGATTGG
Statistics
Matches: 206, Mismatches: 34, Indels: 16
0.80 0.13 0.06
Matches are distributed among these distances:
156 71 0.34
157 74 0.36
158 60 0.29
159 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.18
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCACGAAACGAGCATGCAGGCACTCAGCC
GATCGAAGAGGCAGAATGCGCAAGCCGGGCATCAGCCCGGTCCCCCCGATCTGCTACCATCCCAC
TACCACAACCCTCAGTCCGGCTGGGG
Found at i:22673559 original size:156 final size:159
Alignment explanation
Indices: 22673299--22673636 Score: 429
Period size: 156 Copynumber: 2.1 Consensus size: 159
22673289 GCTGAGCTGA
* * * * * * ** **
22673299 TCGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCTCTACTGCTATCGGTCCCGTT
1 TCGAAGAGGCAGAATGCGCAAGCCGGGCATCAGCCCGGTCCCCCTCGACTGCTATCCATCCCACT
* * *
22673364 ACCACAACCCTCGATCTGGCTGGGGCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAA-CCA
66 ACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCA
22673428 TGAAACGGGCAT-GC-GGGCACTCAGCCGG
131 TG-AACGGGCATGGCAGGGCACTCAGCCGG
*
22673456 TCGAAGAGGCAGAATGCGCAAGCCGGGCATCAGCCCGGTCCCCC-CGATGTGCTA-CCATCCCAC
1 TCGAAGAGGCAGAATGCGCAAGCCGGGCATCAGCCCGGTCCCCCTCGA-CTGCTATCCATCCCAC
*
22673519 TACCACAACCCTC-AGTCCGGCTGTGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACC
65 TACCACAACCCTCGA-TCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACC
** *
22673583 CATGAACGGGCATGGCAGGGTGCTCAGTCGG
129 CATGAACGGGCATGGCAGGGCACTCAGCCGG
22673614 TC-AGAGAGGCAGAATGCGCAAGC
1 TCGA-AGAGGCAGAATGCGCAAGC
22673637 TGGGGATTGG
Statistics
Matches: 157, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
155 1 0.01
156 72 0.46
157 52 0.33
158 32 0.20
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (159 bp):
TCGAAGAGGCAGAATGCGCAAGCCGGGCATCAGCCCGGTCCCCCTCGACTGCTATCCATCCCACT
ACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCA
TGAACGGGCATGGCAGGGCACTCAGCCGG
Found at i:22673740 original size:26 final size:26
Alignment explanation
Indices: 22673704--22673756 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22673694 CAGTCTGGAT
22673704 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
22673730 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22673756 C
1 C
22673757 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22674290 original size:200 final size:196
Alignment explanation
Indices: 22673928--22674449 Score: 537
Period size: 200 Copynumber: 2.6 Consensus size: 196
22673918 GGCTGGGGCT
* * * * ** * *
22673928 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACGATGAAATGATCGTACAGGCATTCAGTCGG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCATGAAATGAGCGTGCGGGCGCTCAGCCGA
* * * * * * * **
22673993 TCGGAGAGGTAGAATGCGTAAGTCGCAGGATCAGCCCGGTCCCCCTGCGTGCTGTCGATCCTACT
66 TCGGAGAGGCAGAATGCGCAAGCCG-GGGATCGGCCAGGTCCCCCTACGTGCTACCGATCCTACT
* * *
22674058 GCTGGTCCTGCTGCCACAAACCCTTCGGTCTGGTCCGATCTTAGAC-TGGGAATGAACTCTGTAT
130 GCTGGTCCTGCTACCACAAACCCTTCGGTCTGGTCCGATC-TAGACTTAGGAATGAACTCTATAT
22674122 GCG
194 GCG
* *
22674125 TAGACATGGAATGAACTCCGTATTGCCTAAGCCAACCCATGAAACGAGCGTGGCGGGCGCTCAAC
1 TAGACATGGAATGAACTCCGTA-TGCCTAAGCCAA-CCATGAAATGAGCGT-GCGGGCGCTCAGC
*
22674190 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTAGGTCCCCCCTTACGTGCTACCGATC
63 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC-AGGT-CCCCC-TACGTGCTACCGATC
* * *
22674255 CTGCTGCTGGTCCTGCTACCGC-AACCCTT-GGTCTGGTCTGATCTAGACTTAGGAATGAACTCT
125 CTACTGCTGGTCCTGCTACCACAAACCCTTCGGTCTGGTCCGATCTAGACTTAGGAATGAACTCT
*
22674318 ATATGCT
190 ATATGCG
* * * * * *
22674325 TAAACATGGAATCAACTCCGTATGCCTACGCCAAAGCCACGAAATGAGCATGCGGGTGCTCAGCC
1 TAGACATGGAATGAACTCCGTATGCCTAAGCC-AA-CCATGAAATGAGCGTGCGGGCGCTCAGCC
* * * * *
22674390 GGTTCAGAGAGGCAAGAATGCCGCGAAGCCAGGGATCGGCCCGATCCCCCGCTACGTGCT
64 -GATCGGAGAGGC-AGAATG-CGC-AAGCCGGGGATCGGCCAGGT-CCCC-CTACGTGCT
22674450 TGTCGATCCT
Statistics
Matches: 270, Mismatches: 42, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
197 22 0.08
198 12 0.04
199 46 0.17
200 107 0.40
201 18 0.07
202 49 0.18
203 16 0.06
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (196 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCATGAAATGAGCGTGCGGGCGCTCAGCCGA
TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCAGGTCCCCCTACGTGCTACCGATCCTACTG
CTGGTCCTGCTACCACAAACCCTTCGGTCTGGTCCGATCTAGACTTAGGAATGAACTCTATATGC
G
Found at i:22676574 original size:158 final size:157
Alignment explanation
Indices: 22676092--22676585 Score: 523
Period size: 159 Copynumber: 3.1 Consensus size: 157
22676082 CAGTCTGAAT
* * *
22676092 GCATACGGAGTTAATTCTCAGTCTAAGAATCAAACCGGATCAGAGGGTTACGACAGCAGGATCGG
1 GCATACGGAGTTAATTCCCAGTCTAAGAATC-AACC-GAACAGAGGGTTACGACAGCAGGATCGA
* * * * * *
22676157 CAGCATGTAGG-GGGACTGGGTCGATCCCCGGCTTGCGCATTCTACCTC-TCTGGCCGGTTGAGC
64 CAGCACGCAGGAGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTC-GG-CGGCTGAAC
22676220 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
127 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *** * * * *
22676251 GCATAGGGAGTTAATT-CCATGTCTAAGCCCCAACCGAACAGAGGGTTATGGCAGCGGGATCAAC
1 GCATACGGAGTTAATTCCCA-GTCTAAGAATCAACCGAACAGAGGGTTACGACAGCAGGATCGAC
* * * * * *
22676315 AGCACACA-GAGGGAGACCAGGTCGATCCCTGGCTTGCGTATTATGCCTCTTCGGCTGGCTCAAC
65 AGCACGCAGGA-GG-GACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGC-GGCTGAAC
* * *
22676379 ACCCGCACGCTCATTTTGTGGGTTGACTTAG
127 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
22676410 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGAACCA-AGGGTTACGATAGAAGGATCGA
1 GCATACGGAGTTAATTCCCAGTCTAAGAATCA-ACCGAA-CAGAGGGTTACGACAGCAGGATCGA
* * * *
22676473 CAGCACGCAGGAGGGACCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTTCGGTCGACTGAACG
64 CAGCACGCAGGAGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGG-CGGCTGAACA
*
22676538 CCCGCACGCTTGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
22676568 GGATACGGAGTTCATTCC
1 GCATACGGAGTTAATTCC
22676586 ATGTCAAGCT
Statistics
Matches: 273, Mismatches: 51, Indels: 23
0.79 0.15 0.07
Matches are distributed among these distances:
156 1 0.00
157 28 0.10
158 94 0.34
159 141 0.52
160 9 0.03
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTAATTCCCAGTCTAAGAATCAACCGAACAGAGGGTTACGACAGCAGGATCGACA
GCACGCAGGAGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCGGCTGAACACCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:22676982 original size:26 final size:26
Alignment explanation
Indices: 22676946--22677000 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
22676936 GTTGACTTAG
22676946 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
22676972 GCATACAGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
22676998 GCA
1 GCA
22677001 CATAGGGGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:22677299 original size:26 final size:26
Alignment explanation
Indices: 22677250--22677302 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22677240 GTTGGCTTAG
* * *
22677250 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACAGAGTTCATTCCACGTCTAA
*
22677276 GCATACAGAGTTCATTCCCCGTCTAA
1 GCATACAGAGTTCATTCCACGTCTAA
22677302 G
1 G
22677303 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCACGTCTAA
Found at i:22678002 original size:26 final size:26
Alignment explanation
Indices: 22677972--22678024 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22677962 GTTGACTTAG
22677972 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22677998 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22678024 G
1 G
22678025 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22678471 original size:158 final size:159
Alignment explanation
Indices: 22677998--22678530 Score: 403
Period size: 158 Copynumber: 3.4 Consensus size: 159
22677988 CCCAGTCTAA
* * * *** * ***
22677998 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGCCACGGTAG-AGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCAACA
* ** * * * * * * * * **
22678062 GAACGCAG-GGGGGATCGGGTCGATGCTCGGCTTGCGTATTTTGCCTCTCCGGCCGATTGAGTGC
66 GCACATAGAGGGGGATCGGGTCGATCCCCGACTTGCGCATTATACCTCTCCGGCCGACTCAGCAC
* * * * * * *
22678126 CCGTATGCCCGTTTCATGGGTTGGCTTAG
131 ACGCACGCTCATTTCATGGATTGACTTAG
* * ** ** ** ** **
22678155 GCATAAGGAGTTCATT-CCATGTCTAAG-CCCCAGCCGGACTAAGGGTTATGGCAGTGGGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAGCAGGATCAA
* * * *
22678218 TAGCACGTAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATACCTCTCCGGTCGACTCAGC
64 CAGCACATAGAGGGGGATCGGGTCGATCCCCGACTTGCGCATTATACCTCTCCGGCCGACTCAGC
* * ** *
22678283 GCCCGCACGCTTGTTTCGTGGATTGACTTAG
129 ACACGCACGCTCATTTCATGGATTGACTTAG
* * * * *
22678314 GCATACGGAGTTCATTCCCAGTTTGAGATCGGACGGGACTGTGGGTTGCGGCAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCAACA
* * * * *
22678379 GCACATAG-GGGGGA-CTGGGTCGGTCCCCGACTTGCGCATTCTACCTTTCCGGCCGGCTGAGCA
66 GCACATAGAGGGGGATC-GGGTCGATCCCCGACTTGCGCATTATACCTCTCCGGCCGACTCAGCA
* * *
22678442 CATGCACGCTCATTTCATGGGTTGGCTTAG
130 CACGCACGCTCATTTCATGGATTGACTTAG
* *
22678472 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGA
22678531 CCAGCAGTCG
Statistics
Matches: 297, Mismatches: 72, Indels: 13
0.78 0.19 0.03
Matches are distributed among these distances:
156 5 0.02
157 36 0.12
158 133 0.45
159 118 0.40
160 5 0.02
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCAACA
GCACATAGAGGGGGATCGGGTCGATCCCCGACTTGCGCATTATACCTCTCCGGCCGACTCAGCAC
ACGCACGCTCATTTCATGGATTGACTTAG
Found at i:22685523 original size:26 final size:26
Alignment explanation
Indices: 22685487--22685539 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22685477 GTTGACTTAG
*
22685487 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22685513 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22685539 G
1 G
22685540 ATCGGATTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22685819 original size:160 final size:158
Alignment explanation
Indices: 22685577--22686015 Score: 411
Period size: 158 Copynumber: 2.8 Consensus size: 158
22685567 TAGGATCGGT
* * * * * * * * **
22685577 AGCACGCAGGAGGGACCGGGGCAATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGG-TCAAGTG
1 AGCACACAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTC-AGCA
* * * * *
22685641 CCTGCACGC-CTATTTCGTGGCTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAGGCCCCCAG
65 CCCGCATGCTC-ATTTCGTGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG--ACCAG
* **
22685705 -CCAGACCGAGGGTTGTGGCAGC-GTGACCGAC
127 ACCAGACCAAGGGTTACGGCAGCAG-GACCGAC
*** *
22685736 AGCACACAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTTGGCTCAGCG
1 AGCACACAG-GGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCA
* * * * *
22685801 CCCGCATGGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGAC
65 CCCGCATGCTCATTTCGTGGCTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGAC
* * *
22685865 CGGACCAAGGGTTACGGTAGCAGGATCGAC
129 CAGACCAAGGGTTACGGCAGCAGGACCGAC
** * * * * * *
22685895 AGCACGTAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCAC
1 AGCACACAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCAC
* * *
22685960 CCGCATGCTCATTTCGTGGCTTGGCGTAGGCATACGGAGTTGATTCCATGTTTAAG
66 CCGCATGCTCATTTCGTGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
22686016 CATATAGAGT
Statistics
Matches: 228, Mismatches: 45, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 94 0.41
159 38 0.17
160 87 0.38
161 6 0.03
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (158 bp):
AGCACACAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCAC
CCGCATGCTCATTTCGTGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGACCA
GACCAAGGGTTACGGCAGCAGGACCGAC
Found at i:22686241 original size:198 final size:196
Alignment explanation
Indices: 22685883--22686409 Score: 678
Period size: 198 Copynumber: 2.7 Consensus size: 196
22685873 GGGTTACGGT
* * * *
22685883 AGCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGA
1 AGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG
* * * * * * *
22685948 CCGGCTGAGCACCCGCATGCTCATTTCGTGGCTTGGCGTAGGCATACGGAGTTGATTCCATGTTT
66 CCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * *
22686013 AAGCATATAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGGACCAG
131 AAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGACCAG
22686078 C
196 C
** *
22686079 AGCAGGATCGGTAGCACGTAAGGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC
1 AGCAGGATCGACAGCACGT-A-GGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC
* * *
22686144 GGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
64 GGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * * *
22686209 CTACGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGACC
129 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGACC
22686274 AGC
194 AGC
* * * * * * *
22686277 AGTAGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCTCGACTTACGCATTCTACCTCTCCGG
1 AGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG
* ** * * * * *
22686342 CCGACTGAATGCCTGTACGATCATTTCAT-CGTTGGCTTAGGCATATGGAGTTCATTCCATGTCT
66 CCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
22686406 AAGC
131 AAGC
22686410 CCCAGTCGGA
Statistics
Matches: 283, Mismatches: 46, Indels: 5
0.85 0.14 0.01
Matches are distributed among these distances:
195 36 0.13
196 76 0.27
197 2 0.01
198 169 0.60
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (196 bp):
AGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG
CCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGACCAG
C
Found at i:22686608 original size:26 final size:26
Alignment explanation
Indices: 22686579--22686631 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22686569 GTTGACTTAG
22686579 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
22686605 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
22686631 G
1 G
22686632 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:22686949 original size:158 final size:160
Alignment explanation
Indices: 22686692--22687039 Score: 479
Period size: 158 Copynumber: 2.2 Consensus size: 160
22686682 GATCGAGCCA
*
22686692 ATCCCCAGCTTGCGCATTCTGCCTC-TCTGACCGACTGAGCACCCTGCATGCCCGTTTCATGGGT
1 ATCCCCGGCTTGCGCATTCTGCCTCTTC-GACCGACTGAGCACCCTGCATGCCCGTTTCATGGGT
* * * **
22686756 TGGCTTAGTCATAGGGAGTTCATTCCATGTCTAAGCCACAGCCGGA-CTGAGGGTTGTGGTAGTG
65 TGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCACAGCCAGATC-GAGGGTTGTGGTAACG
* * * * *
22686820 GGATCGGTAGCACATCG-GGGGGACCGGGCTG
129 GGACCGATAGCACATAGAGGGGGACCAGGCCG
* * **
22686851 ATGCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGTGCCC-GCATGCCCGTTTCATGGGTT
1 ATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGACTGAGCACCCTGCATGCCCGTTTCATGGGTT
*
22686915 GGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCAGATCGAGGGTTGTGGTAACGGG
66 GGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCACAGCCAGATCGAGGGTTGTGGTAACGGG
*
22686980 ACCGATAGCACGTAGAGGGGGACCAGGCCG
131 ACCGATAGCACATAGAGGGGGACCAGGCCG
* *
22687010 ATCCCCGACTTGCGCATTATGCCTCTTCGA
1 ATCCCCGGCTTGCGCATTCTGCCTCTTCGA
22687040 TCAGCTCAGC
Statistics
Matches: 166, Mismatches: 20, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
158 88 0.53
159 76 0.46
160 2 0.01
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (160 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGACTGAGCACCCTGCATGCCCGTTTCATGGGTT
GGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCACAGCCAGATCGAGGGTTGTGGTAACGGG
ACCGATAGCACATAGAGGGGGACCAGGCCG
Found at i:22687225 original size:158 final size:157
Alignment explanation
Indices: 22686605--22687267 Score: 486
Period size: 159 Copynumber: 4.2 Consensus size: 157
22686595 CCCAATCTAA
* * ** * ***
22686605 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACTGGACCGAGGGTTACGACAATAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGCA-CAG-CCGGACCGAGGGTTGCGGTAACAGGATCAAC
* * *
22686669 AGCACGCAGGGGGGATCGAGCCAATCCCCAGCTTGCGCATTCTGCCTC-TCTGACC-GACTGAGC
64 AGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTC-GACCAG-CTGAGC
* *
22686732 ACCCTGCATGCCCGTTTCATGGGTTGGCTTAG
127 ACCC-GCACGCCCGTTTCATGGGTTGACTTAG
* * * * *** ***
22686764 TCATAGGGAGTTCATT-CCATGTCTAAGCCACAGCCGGACTGAGGGTTGTGGTAGTGGGATCGGT
1 GCATACGGAGTTCATTCCCA-GTCTAAG-CACAGCCGGACCGAGGGTTGCGGTAACAGGATCAAC
* * * * * **
22686828 AGCACATC-GGGGGGACCGGGCTGATGCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGTG
64 AGCAC-GCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCAGCTGAGCA
* *
22686892 CCCGCATGCCCGTTTCATGGGTTGGCTTAG
128 CCCGCACGCCCGTTTCATGGGTTGACTTAG
* * * * * * * * * *
22686922 GCATAGGGAGTTCATT-CCATGCCTAAGCCCCAGCCAGATCGAGGGTTGTGGTAACGGGACCGAT
1 GCATACGGAGTTCATTCCCA-GTCTAAG-CACAGCCGGACCGAGGGTTGCGGTAACAGGATCAAC
* * * * *
22686986 AGCACGTAGAGGGGGACCAGGCCGATCCCC-GACTTGCGCATTATGCCTCTTCGATCAGCTCAGC
64 AGCACGCAG-GGGGGACCGGGCCGATCCCCAG-CTTGCGCATTCTGCCTCTTCGACCAGCTGAGC
* * * * * * *
22687050 GCCTGCACACTCATTTCGTGGGTTGACTTAT
127 ACCCGCACGCCCGTTTCATGGGTTGACTTAG
* * * *
22687081 GCATACAGAGTTCATTCCCAGTCTAAG-ATAGGACCGGACCGAGGGTTGCGGTAGCAAGATCAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCACA-G-CCGGACCGAGGGTTGCGGTAACAGGATCAAC
* * *
22687145 AGCATGCAGGGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTC-TCTAGCCAGCTGAGCA
64 AGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGA-CCAGCTGAGCA
* * * * *
22687209 CCCGTACGCTCGTTTCGT-AGTTTAGCTTAG
128 CCCGCACGCCCGTTTCATGGGTTGA-CTTAG
22687239 GCATAC-GATGTTCATTCCACA-TCTAAGCA
1 GCATACGGA-GTTCATTCC-CAGTCTAAGCA
22687268 TATGGAGTTC
Statistics
Matches: 409, Mismatches: 77, Indels: 36
0.78 0.15 0.07
Matches are distributed among these distances:
157 10 0.02
158 173 0.42
159 215 0.53
160 10 0.02
161 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCACAGCCGGACCGAGGGTTGCGGTAACAGGATCAACAG
CACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCAGCTGAGCACCC
GCACGCCCGTTTCATGGGTTGACTTAG
Found at i:22687797 original size:26 final size:26
Alignment explanation
Indices: 22687746--22687798 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22687736 TTCATGGGAG
***
22687746 GCATACGGAGTTCATCCCCCGTCTAA
1 GCATACGGAGTTCATCCCCAACCTAA
*
22687772 GCATACGGAGTTCATTCCCAACCTAA
1 GCATACGGAGTTCATCCCCAACCTAA
22687798 G
1 G
22687799 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAACCTAA
Found at i:22688431 original size:159 final size:157
Alignment explanation
Indices: 22687844--22688590 Score: 512
Period size: 158 Copynumber: 4.7 Consensus size: 157
22687834 ACAGCACGCA
* * * ** * * * * *
22687844 AGGGGGATCGGGTCC-ATCCT-GGCTTGCGCATTCTGCCTCTCCAACCAGCTGAGCGCCTGTATG
1 AGGGGGACCGGG-CCGATCCTCGGCTTGCGCATTTTGCCTCTTCGGCCGGCTGAGAGCCCGCACG
* * * ** ** *
22687907 CCCATTTCATGGGTT-GCCTTAGGCATAGGGAGTTCATTCCATGTCTCAGCCCCAATCGGACCGA
65 CTCGTTTCAT-GGTTAG-CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCATAGCCAGACCGA
* * * * * ** ** *
22687971 AGGTTATCGCAGCAGGACCGGCAGCACACAG
128 GGGTTGTGGCAGCGGGATCGATAGCATGC-T
* * * * * * ** * *
22688002 AGGGGGACTGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGGTTGGCTCAGCA-CCCGCACT
1 AGGGGGACCGGGCCGATCCTCGGCTTGCGCATTTTGCCTCTTCGGCCGGCTGAG-AGCCCGCACG
* * * * *
22688066 CTCATTTCATGGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTAAGCCATAGCTAGATCGAG
65 CTCGTTTCAT-GGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCATAGCCAGACCGAG
* *
22688131 GGTTGTGGCAGTGGGATCGACAGCATG-T
129 GGTTGTGGCAGCGGGATCGATAGCATGCT
* * * * * * * * *
22688159 CGAGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGTTGAGTGCCCACACG
1 AG-GGGGACCGGGCCGATCCTCGGCTTGCGCATTTTGCCTCTTCGGCCGGCTGAGAGCCCGCACG
* * *
22688224 -TCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCTAGCCAGACCGA
65 CT-CGTTTCAT-GGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCATAGCCAGACCGA
* *
22688288 GGGTTGTGGTAGCGGGACCGATAGCATGCAT
128 GGGTTGTGGCAGCGGGATCGATAGCATGC-T
* * * * * *
22688319 AGGGGGACCAGGCCGATCCTCGGCTCGCGTATTTTGCCTCTTCGGTCGGCTCAGAGCTCGCACGC
1 AGGGGGACCGGGCCGATCCTCGGCTTGCGCATTTTGCCTCTTCGGCCGGCTGAGAGCCCGCACGC
* * * * * *
22688384 TCGTTTCGTGGATTAACTTATGCATATGGAGTTCATTCCCA-GTCTAAG--ATTGGACCGGACCG
66 TCGTTTCATGG-TTAGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCA-TAG-CCAGACCG
* *
22688446 AGGGTTGCGGCAGCAGGATCGATAGC--GCGT
127 AGGGTTGTGGCAGCGGGATCGATAGCATGC-T
* * *
22688476 AGGGGGGACCGGGCCGATCCTTGGCTTGCACATTTTGCCTC-TCTGGCCGGCTGAGCA-CCCGGA
1 A-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTTTGCCTCTTC-GGCCGGCTGAG-AGCCCGCA
* ** *
22688539 CGCTCGTTTCATAGGTTAGTTTAGGCATATAGAGTTCATTCCACGTCTAAGC
63 CGCTCGTTTCAT-GGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
22688591 ATATGGAGTT
Statistics
Matches: 467, Mismatches: 102, Indels: 39
0.77 0.17 0.06
Matches are distributed among these distances:
157 12 0.03
158 234 0.50
159 214 0.46
160 7 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
AGGGGGACCGGGCCGATCCTCGGCTTGCGCATTTTGCCTCTTCGGCCGGCTGAGAGCCCGCACGC
TCGTTTCATGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCATAGCCAGACCGAGGG
TTGTGGCAGCGGGATCGATAGCATGCT
Found at i:22688450 original size:317 final size:316
Alignment explanation
Indices: 22687911--22688590 Score: 677
Period size: 317 Copynumber: 2.1 Consensus size: 316
22687901 TGTATGCCCA
* * * *
22687911 TTTCATGGGTTGCCTTAGGCATAGGGAGTTCATTCCATGTCTCAGCCCCAATCGGACCGAAGGTT
1 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAAGGTT
* ** * *
22687976 ATCGCAGCAGGACCGGCAGCACACAGAGGGGGACTGGGTCGATCCCCGACTTGCGCATTATGCCT
66 ATCGCAGCAGGACCGACAGCACACAGAGGGGGACCAGGCCGATCCCCGACTCGCGCATTATGCCT
* * * **
22688041 CTCCGGTTGGCTCAGCACCCGCACTCTCATTTCATGGGTTGGCTTAGTCATAGGGAGTTCATTCC
131 CTCCGGTCGGCTCAGCACCCGCACGCTCATTTCATGGATTAACTTAGTCATAGGGAGTTCATTCC
* * * ** * *
22688106 ATGTCTAAGCCATAGCTAGATCGAGGGTTGTGGCAGTGGGATCGACAGCATGTCGAGGGGACCGG
196 ATGTCTAAG-CATAGCCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGACCGG
* * * **
22688171 GCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGTTGAGTGCCCACACG-TCCG
260 GCCGATCCCCGACTTGCACATTCTGCCTCTCCGGCCGGCTGAGCACCCACACGCT-CG
* * * *
22688228 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCTAGCCAGACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAAGGTT
* * * * * ** * * * * *
22688293 GTGGTAGCGGGACCGATAGCATGCATAGGGGGACCAGGCCGATCCTCGGCTCGCGTATTTTGCCT
66 ATCGCAGCAGGACCGACAGCACACAGAGGGGGACCAGGCCGATCCCCGACTCGCGCATTATGCCT
* * * * *
22688358 CTTCGGTCGGCTCAG-AGCTCGCACGCTCGTTTCGTGGATTAACTTA-TGCATATGGAGTTCATT
131 CTCCGGTCGGCTCAGCA-CCCGCACGCTCATTTCATGGATTAACTTAGT-CATAGGGAGTTCATT
* * * * *
22688421 CCCA-GTCTAAG-ATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCGCGTAGGGGGGA
194 -CCATGTCTAAGCA-TAG-CCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGA
** * * * **
22688484 CCGGGCCGATCCTTGGCTTGCACATTTTGCCTCTCTGGCCGGCTGAGCACCCGGACGCTCG
256 CCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGCCGGCTGAGCACCCACACGCTCG
* * * ** *
22688545 TTTCATAGGTTAGTTTAGGCATATAGAGTTCATTCCACGTCTAAGC
1 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
22688591 ATATGGAGTT
Statistics
Matches: 291, Mismatches: 66, Indels: 12
0.79 0.18 0.03
Matches are distributed among these distances:
315 1 0.00
316 4 0.01
317 282 0.97
318 4 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (316 bp):
TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAAGGTT
ATCGCAGCAGGACCGACAGCACACAGAGGGGGACCAGGCCGATCCCCGACTCGCGCATTATGCCT
CTCCGGTCGGCTCAGCACCCGCACGCTCATTTCATGGATTAACTTAGTCATAGGGAGTTCATTCC
ATGTCTAAGCATAGCCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGACCGGG
CCGATCCCCGACTTGCACATTCTGCCTCTCCGGCCGGCTGAGCACCCACACGCTCG
Found at i:22688593 original size:26 final size:26
Alignment explanation
Indices: 22688563--22688615 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22688553 GTTAGTTTAG
22688563 GCATATAGAGTTCATT-CCACGTCTAA
1 GCATATAGAGTTCATTCCCA-GTCTAA
*
22688589 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
22688615 G
1 G
22688616 ATTTTGGGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:22689784 original size:157 final size:157
Alignment explanation
Indices: 22689307--22689790 Score: 492
Period size: 159 Copynumber: 3.1 Consensus size: 157
22689297 AAGCATATGA
* ** * * * *
22689307 AGTTCATTCCCAGTCTAAGATTGGACTGGATCGAGGGTTGCGGCTGCAGGATCGACAGCACGTAG
1 AGTTCATTCCCAGTCTAACATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTA-
*
22689372 GGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGATCGACTAAGCACCCGCACG-T
65 GGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGGTCGACTAAGCACCCGCACGCT
*
22689436 CCATTTCGTGGGTTGGCTTAGGCATAGAG
130 -CATTTCGTGGGTTGGCTTAGGCATACAG
* * * * * * *
22689465 AGTTCATT-CCATGTGTAAGC-TCCAG-CCGGACTGAGGGTTGTGGTAGCGGGACCGGCAGCATG
1 AGTTCATTCCCA-GTCTAA-CAT-CAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * * * * * * * * *
22689527 TAGAGGGGGACCCGGCTGGTCCCCGACTTGCGCATTATGCCTCTTCGG-CCAGCTCAGCACCCGC
63 T--AGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGGTCGA-CTAAGCACCCGC
* * * *
22689591 ACGCTCGTTTCGCGGGTTGACTTATGCATACAG
125 ACGCTCATTTCGTGGGTTGGCTTAGGCATACAG
* *
22689624 AGTTCATTCCCAGTCTAACATCAGACCAGACCGAAGGTTGCGGCAGCAGGATCGGCAGCACGTAG
1 AGTTCATTCCCAGTCTAACATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAG
* * * * * * ** *
22689689 GGGGACCGGGCCAATGCCTGGCTCGTGCATTCTACTTCTCCGGTCGACTGAGTGCCCGCATGCTC
66 GGGGACCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGGTCGACTAAGCACCCGCACGCTC
22689754 ATTTCGTGGGTTGGCTTAGGCATACAG
131 ATTTCGTGGGTTGGCTTAGGCATACAG
22689781 AGTTCATTCC
1 AGTTCATTCC
22689791 ATGGCTAAGC
Statistics
Matches: 254, Mismatches: 61, Indels: 23
0.75 0.18 0.07
Matches are distributed among these distances:
157 82 0.32
158 50 0.20
159 117 0.46
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAACATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAG
GGGGACCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGGTCGACTAAGCACCCGCACGCTC
ATTTCGTGGGTTGGCTTAGGCATACAG
Found at i:22689803 original size:26 final size:25
Alignment explanation
Indices: 22689773--22689866 Score: 100
Period size: 26 Copynumber: 3.7 Consensus size: 25
22689763 GTTGGCTTAG
*
22689773 GCATACAGAGTTCATTCCATGGCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
* * *
22689799 GCATACAAAGTTCCTTCCCAGTCTAG
1 GCATACAGAGTTCATT-CCAGTCTAA
*
22689825 GCATAC-GAAGTTCATCCCAGTCTAA
1 GCATACAG-AGTTCATTCCAGTCTAA
*
22689850 GCATACGGAGTTCATTC
1 GCATACAGAGTTCATTC
22689867 GAAGTCTTAG
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
25 22 0.39
26 31 0.55
27 3 0.05
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:22689848 original size:25 final size:25
Alignment explanation
Indices: 22689773--22689864 Score: 96
Period size: 25 Copynumber: 3.6 Consensus size: 25
22689763 GTTGGCTTAG
* *
22689773 GCATAC-AGAGTTCATTCCATGGCTAA
1 GCATACGA-AGTTCATCCCA-GTCTAA
* * *
22689799 GCATACAAAGTTCCTTCCCAGTCTAG
1 GCATACGAAGTT-CATCCCAGTCTAA
22689825 GCATACGAAGTTCATCCCAGTCTAA
1 GCATACGAAGTTCATCCCAGTCTAA
*
22689850 GCATACGGAGTTCAT
1 GCATACGAAGTTCAT
22689865 TCGAAGTCTT
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
25 25 0.45
26 25 0.45
27 6 0.11
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (25 bp):
GCATACGAAGTTCATCCCAGTCTAA
Found at i:22689873 original size:51 final size:52
Alignment explanation
Indices: 22689770--22689873 Score: 122
Period size: 51 Copynumber: 2.0 Consensus size: 52
22689760 TGGGTTGGCT
* * *
22689770 TAGGCATACAGAGTTCATTCCATGGCTAAGCATACAAAGTTCCTTCCCAGTC
1 TAGGCATACAGAGTTCATCCCATGGCTAAGCATACAAAGTTCATTCCAAGTC
* ** *
22689822 TAGGCATAC-GAAGTTCATCCCA-GTCTAAGCATACGGAGTTCATTCGAAGTC
1 TAGGCATACAG-AGTTCATCCCATGGCTAAGCATACAAAGTTCATTCCAAGTC
22689873 T
1 T
22689874 TAGATTAGAT
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
51 25 0.57
52 19 0.43
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (52 bp):
TAGGCATACAGAGTTCATCCCATGGCTAAGCATACAAAGTTCATTCCAAGTC
Found at i:22691588 original size:26 final size:26
Alignment explanation
Indices: 22691552--22691604 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22691542 GTTGGCTTAG
*
22691552 GCATAGGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
22691578 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
22691604 G
1 G
22691605 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:22691949 original size:26 final size:25
Alignment explanation
Indices: 22691919--22691967 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
22691909 GTTGACTTAG
22691919 GCATACGGAGTTCATCCCCAGTCTGA
1 GCATA-GGAGTTCATCCCCAGTCTGA
* *
22691945 GCATATGAGTTCATTCCCAGTCT
1 GCATAGGAGTTCATCCCCAGTCT
22691968 AAGATCGGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (25 bp):
GCATAGGAGTTCATCCCCAGTCTGA
Found at i:22692455 original size:25 final size:25
Alignment explanation
Indices: 22692421--22692471 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
22692411 TTTGGCCTAG
*
22692421 GCATACAGAGTTTATT-CCAGTCTAA
1 GCATACAGAGTTCATTCCCAGT-TAA
22692446 GCATACAGAGTTCATTCCCAGTTAA
1 GCATACAGAGTTCATTCCCAGTTAA
22692471 G
1 G
22692472 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCCAGTTAA
Found at i:22693190 original size:26 final size:26
Alignment explanation
Indices: 22693154--22693206 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22693144 GTTGACTTAG
22693154 GCATACGGAGTTCA-TCCGTAGTCTAA
1 GCATACGGAGTTCATTCC-TAGTCTAA
22693180 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
22693206 G
1 G
22693207 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:22702046 original size:26 final size:26
Alignment explanation
Indices: 22701996--22702048 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22701986 GTTGGCTTAG
*
22701996 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
22702022 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
22702048 G
1 G
22702049 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:22702236 original size:26 final size:26
Alignment explanation
Indices: 22702206--22702258 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22702196 GTTGACTTAG
* *
22702206 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGATCATCCCCAATCTAA
*
22702232 GCATACAGAGATCATTCCCAATCTAA
1 GCATACAGAGATCATCCCCAATCTAA
22702258 G
1 G
22702259 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (26 bp):
GCATACAGAGATCATCCCCAATCTAA
Found at i:22702579 original size:26 final size:26
Alignment explanation
Indices: 22702549--22702601 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22702539 GTTGGCTTAG
*
22702549 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
22702575 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22702601 G
1 G
22702602 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22703607 original size:159 final size:158
Alignment explanation
Indices: 22703336--22703627 Score: 370
Period size: 159 Copynumber: 1.8 Consensus size: 158
22703326 CAGACTGGAT
* * ** * *
22703336 CGAGGGTTGCGGCAGCAGGATCGGTAGCATGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCAT
1 CGAGGGTTGCGGCAACAGGATCGGCAGCATGCAAAGGGGACCGGGCCGATCCCCGGCTTGCCCAT
* * * * * ** * * *
22703401 TCTGCCTTTCGGGCCGGTTGAGCACCCGCACGCCTATTTTGTTGGTTGGCTTAGGTATAGGGAGT
66 TCTACCTCTCCGGCCGGCTGAGCACCCGCAAGCCTATTTCATGGGTTGGCTTAGGCATACGGAGT
22703466 TCACTCCATCTCAAAGCCCCAGTCAGAC
131 TCACTCCATCTCAAAGCCCCAGTCAGAC
* *
22703494 CGAGGGTTGTGGCAACGGGATCGGCAGCATGCAAAAGGGGACCGGGCCGATCCCCGGCTTGCCCA
1 CGAGGGTTGCGGCAACAGGATCGGCAGCATGC-AAAGGGGACCGGGCCGATCCCCGGCTTGCCCA
* * *
22703559 TTCTACCTCTCCGGCTGGCTGAGCGCCCGCAAG-CTCGTTTCATGGGTTGGCTTAGGCATACGGA
65 TTCTACCTCTCCGGCCGGCTGAGCACCCGCAAGCCT-ATTTCATGGGTTGGCTTAGGCATACGGA
22703623 GTTCA
129 GTTCA
22703628 TTCTATGTCT
Statistics
Matches: 111, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
158 30 0.27
159 81 0.73
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.22
Consensus pattern (158 bp):
CGAGGGTTGCGGCAACAGGATCGGCAGCATGCAAAGGGGACCGGGCCGATCCCCGGCTTGCCCAT
TCTACCTCTCCGGCCGGCTGAGCACCCGCAAGCCTATTTCATGGGTTGGCTTAGGCATACGGAGT
TCACTCCATCTCAAAGCCCCAGTCAGAC
Found at i:22704135 original size:26 final size:26
Alignment explanation
Indices: 22704098--22704150 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22704088 GTTGAATTAG
22704098 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
22704124 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
22704150 G
1 G
22704151 ATCAGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:22704621 original size:158 final size:157
Alignment explanation
Indices: 22704124--22704622 Score: 494
Period size: 157 Copynumber: 3.2 Consensus size: 157
22704114 CCCAGTCTAA
* * ** *
22704124 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATAGGACCGAGGGTTACGACAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGTAGTAGGATCGACA
* * * * *
22704189 GCATGCA-GGGGGAACGGGTCAATCCTCGGCTTGCGCATTCTACCTCTCCGATCGACTGAGCGCC
66 GCACGCAGGGGGGAAC-GGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
* *
22704253 CGTACGCCCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * ** *
22704281 GCATA-GGAAGTTCATT-CCATGTCTAAGCCCCAG-CCAGATCGAGGGTTGTGGTAGTGGGA-CT
1 GCATACGG-AGTTCATTCCCA-GTCTAAG-ATCAGATCGGATCGAGGGTTACGGTAGTAGGATC-
* ** * * * * * * *
22704342 GGCAGCACATAGAGGGGGATCGGGCTGAT-CCCGGCTTGCGCATTATGCCTCT-CGACCTGTTCA
62 GACAGCACGCAG-GGGGGAACGGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGA
*
22704405 GCGCCCGCACGCTCGTTTCAG-GGGTTGACTTAG
125 GCGCCCGCACGCTCGTTTC-GTGGGTTGGCTTAG
* * *
22704438 GCATACAGAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGTAGTAGGATCGACA
* * * * *
22704503 GCACGCAGGGGGGACCGCGTCGGTCCCCGGCTTGCCCATTCTGCCTCTCCTATCGGCTGAGCACC
66 GCACGCAGGGGGGAACG-GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
*
22704568 CGCACGCTTGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
22704596 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
22704623 CATACGAAGT
Statistics
Matches: 267, Mismatches: 58, Indels: 33
0.75 0.16 0.09
Matches are distributed among these distances:
156 19 0.07
157 152 0.57
158 87 0.33
159 9 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGTAGTAGGATCGACA
GCACGCAGGGGGGAACGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:22704633 original size:26 final size:26
Alignment explanation
Indices: 22704596--22704648 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22704586 GTTGGCTTAG
*
22704596 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
22704622 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22704648 G
1 G
22704649 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22705005 original size:26 final size:26
Alignment explanation
Indices: 22704976--22705025 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
22704966 GTTGACTTAG
22704976 GCATACGAAGCTC-TTCCCCAGTCTCA
1 GCATACGAAGCTCATT-CCCAGTCTCA
* *
22705002 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGAAGCTCATTCCCAGTCT
22705026 AAGATCAGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 19 0.90
27 2 0.10
ACGTcount: A:0.22, C:0.34, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTCA
Found at i:22705387 original size:159 final size:158
Alignment explanation
Indices: 22705002--22705394 Score: 400
Period size: 159 Copynumber: 2.5 Consensus size: 158
22704992 CCCAGTCTCA
*
22705002 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * **
22705067 GCA--CACAGGGGGACCGAGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGTGC
65 GCACGCAGAGGGGGACCGAGCCAATCCCCAGCTTACGCATTATGCCTCTCCGGCCGACTCAACGC
* * **
22705130 CCGCATGCCCGTTTCGTAGGTTGGCTTAG
130 CCGAACGCCCGTTTCGTAGGTTAACTTAG
* * * * ** * * * * **
22705159 CCATAGGGAATTCATT-CCATGTCTACGCCCCAGCCAGACCGAGGGTTGTGGCAGTGGGATCGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACGGACCGAGGGTTGCGACAGCAGGATCGAC
* * *
22705223 AGCACGCAGAGGGGGACC-AGGTCGAT-CCCAGGCTTACGCATTATGCCTCTCCGGCCGGCTCAA
64 AGCACGCAGAGGGGGACCGA-GCCAATCCCCA-GCTTACGCATTATGCCTCTCCGGCCGACTCAA
* *
22705286 CGCCCGAACGCTCGTTTCGTGGGTTAACTTAG
127 CGCCCGAACGCCCGTTTCGTAGGTTAACTTAG
* * * *
22705318 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGGCCGAGGGTTACGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTGCGACAGCAGGATCGACA
*
22705383 GCACGTAGAGGG
65 GCACGCAGAGGG
22705395 ATCTGGTCGG
Statistics
Matches: 183, Mismatches: 45, Indels: 14
0.76 0.19 0.06
Matches are distributed among these distances:
156 3 0.02
157 46 0.25
158 12 0.07
159 119 0.65
160 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.20
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACCGAGGGTTGCGACAGCAGGATCGACAG
CACGCAGAGGGGGACCGAGCCAATCCCCAGCTTACGCATTATGCCTCTCCGGCCGACTCAACGCC
CGAACGCCCGTTTCGTAGGTTAACTTAG
Found at i:22705972 original size:26 final size:26
Alignment explanation
Indices: 22705922--22705973 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22705912 GTTTGCTTAG
*
22705922 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
22705948 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
22705974 TAGTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:22706655 original size:26 final size:26
Alignment explanation
Indices: 22706625--22706677 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22706615 GTTGACTTAG
*
22706625 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
*
22706651 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
22706677 G
1 G
22706678 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:22706958 original size:159 final size:159
Alignment explanation
Indices: 22706651--22707155 Score: 468
Period size: 159 Copynumber: 3.2 Consensus size: 159
22706641 CCCAGTCTAA
* * * * * * *
22706651 GCATACGGAGTTCATTCCCA-GCCTAAG-ATCA-AACTGGACCAAGGGTTACGACAGCAGAAT-A
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATC-GGACCGAGGGTTACGGCAGCAGGATCG
** * * * * *
22706712 AGCAGCACGCAGGGGGGATCAAGCCGATCCCTGGCTTACGCATTTTGTCTCTCCGGCCGGCTGAG
64 A-CAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAG
* *
22706777 CAACCGCACGCTCGTTTGATGGGTTGGCTTAG
128 CAACCGCACGCTCATTTCATGGGTTGGCTTAG
* * ** **
22706809 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGTGGGA-CTGA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGACCGAGGGTTACGGCAGCAGGATC-GA
* ** * *
22706872 CAGCACGCAGAGGGGGATCGGGTCGATCCCCAACTTGCGCATTATGCCTCTCCGGTCGGGTCAGC
65 CAGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGC
* * *
22706937 ACCCGCACGCTCCTTTCATGGGTTGACTTAG
129 AACCGCACGCTCATTTCATGGGTTGGCTTAG
* * *** * *
22706968 GCATACAGATTTCATTCCCA-GTCTAAG-ATTGGATGGGACCGAGGGTTACGGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCGGACCGAGGGTTACGGCAGCAGGATCGA
* * * *
22707031 CAGCACACAGGGGGGGACCGGCCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
65 CAGCACGCA-GGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGC
** ** **
22707096 GGCCATACGCTCATTTTGTGGGTTGGCTTAG
129 AACCGCACGCTCATTTCATGGGTTGGCTTAG
22707127 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
22707156 TAAGAGCTCA
Statistics
Matches: 274, Mismatches: 61, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 52 0.19
159 213 0.78
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGACCGAGGGTTACGGCAGCAGGATCGAC
AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCAA
CCGCACGCTCATTTCATGGGTTGGCTTAG
Found at i:22708779 original size:159 final size:159
Alignment explanation
Indices: 22708403--22708894 Score: 466
Period size: 157 Copynumber: 3.1 Consensus size: 159
22708393 AAGCATATAA
* *** *
22708403 AGTTCATTCCCAGTCTAAGATCGGACCGAACAGAGGGTTGC-GATGTAGGATCGGTAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCAGACACAGGATCGATAGCACGTAG
* * * * *
22708467 -GTGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTTC-GACTGGCTGAGCGCCCGCACG
66 AGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTC-TCGGACAGGCTGAGCGCCCGCACG
* * *
22708530 CCCATTTCGTGGGTTGGCTTAGGCATAGGG
130 CTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * ** * * * * *
22708560 AGTTCATT-CGATGTCTAAG-CCCCAGTCGAACCGAGGG-T-CATGGCACCGGGACCGACAGCAC
1 AGTTCATTCCCA-GTCTAAGATCGGA-CCGAACCGAGGGTTGCA-GACA-CAGGATCGATAGCAC
* * *
22708621 GTAGAGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGA-AGGCTCAGCGCCCG
62 GTAGAGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCT-CGGACAGGCTGAGCGCCCG
* * *
22708685 CACGCTCGTTTCGTGGGTTGACTTAGGAATATGG
126 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * *
22708719 AGTTCATTCCCAGTATAAGATCGGACCGGACCGAGGGTTGCAGCCACAGGATTGATAGCACGT--
1 AGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCAGACACAGGATCGATAGCACGTAG
* * * * * * * * *
22708782 AGGGGGATCGGGCTGGTCCCCAGCATACACATTCTGCCTCTCGGACCGACTGAGCGTCCGCTCGC
66 AGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCGGACAGGCTGAGCGCCCGCACGC
*
22708847 TCGTTTCATGGGTTGGCTTAGGCATACGG
131 TCGTTTCGTGGGTTGGCTTAGGCATACGG
22708876 AGTTCATT-CCATGTCTAAG
1 AGTTCATTCCCA-GTCTAAG
22708895 CATACGGAGT
Statistics
Matches: 265, Mismatches: 56, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
155 1 0.00
156 12 0.05
157 113 0.43
158 15 0.06
159 112 0.42
160 10 0.04
161 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (159 bp):
AGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCAGACACAGGATCGATAGCACGTAG
AGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCGGACAGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATACGG
Found at i:22708898 original size:26 final size:26
Alignment explanation
Indices: 22708868--22708920 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22708858 GTTGGCTTAG
22708868 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22708894 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22708920 G
1 G
22708921 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22709313 original size:250 final size:250
Alignment explanation
Indices: 22708872--22709373 Score: 934
Period size: 250 Copynumber: 2.0 Consensus size: 250
22708862 GCTTAGGCAT
*
22708872 ACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAG
1 ACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAG
* *
22708937 GGTTGTGGCAGCAGGACTAGCAGTAGGATCAGCAACACGTAGGGGGGGTCAAGTTGATCCCTGGC
66 GGTTGTGGCAGCAGGACTAGCAGTAGGATCAGCAACACGTAGGGGGGGTCAAGTCGATCCCCGGC
22709002 TTGCGCATTTTGCCTCTCTAGCCGACTGAGCGCCTGCACGCTCGTTTCGTAGGTTGGCTTAGGCA
131 TTGCGCATTTTGCCTCTCTAGCCGACTGAGCGCCTGCACGCTCGTTTCGTAGGTTGGCTTAGGCA
22709067 TACGGAGTTCATTCCATGTCTAATCCCCAGTCGGACCGAGGGTTGTGGCAGCAGG
196 TACGGAGTTCATTCCATGTCTAATCCCCAGTCGGACCGAGGGTTGTGGCAGCAGG
22709122 ACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAG
1 ACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAG
*
22709187 GGTTGTGGTAGCAGGACTAGCAGTAGGATCAGCAACATC-TAGGGGGGGTCAAGTCGATCCCCGG
66 GGTTGTGGCAGCAGGACTAGCAGTAGGATCAGCAACA-CGTAGGGGGGGTCAAGTCGATCCCCGG
* *
22709251 CTTGCGCATTTTGCCTCTCTAGCCGACTGAGCGCCTGTACGCTTGTTTCGTAGGTTGGCTTAGGC
130 CTTGCGCATTTTGCCTCTCTAGCCGACTGAGCGCCTGCACGCTCGTTTCGTAGGTTGGCTTAGGC
22709316 ATACGGAGTTCATTCCATGTCTAATCCCCAGTCGGACCGAGGGTTGTGGCAGCAGG
195 ATACGGAGTTCATTCCATGTCTAATCCCCAGTCGGACCGAGGGTTGTGGCAGCAGG
22709372 AC
1 AC
22709374 CAGCAGCGGG
Statistics
Matches: 245, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
250 244 1.00
251 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (250 bp):
ACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAG
GGTTGTGGCAGCAGGACTAGCAGTAGGATCAGCAACACGTAGGGGGGGTCAAGTCGATCCCCGGC
TTGCGCATTTTGCCTCTCTAGCCGACTGAGCGCCTGCACGCTCGTTTCGTAGGTTGGCTTAGGCA
TACGGAGTTCATTCCATGTCTAATCCCCAGTCGGACCGAGGGTTGTGGCAGCAGG
Found at i:22709830 original size:159 final size:159
Alignment explanation
Indices: 22709611--22710027 Score: 414
Period size: 159 Copynumber: 2.6 Consensus size: 159
22709601 GACTGAGGTG
* * * * * * * * * *
22709611 ATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCACCCGCAC-ATCTATTTCGTGGGTT
1 ATCCCAAGCTTGCGCATTATACCTATCCGGTCGGCTCAGCGCCCGCACGCTC-GTTTCGTGGGTT
* * * * * * *
22709675 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGATCGAGGGTTGTGGCAGTGG
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACTAGACCGAGGGTTGCGGCAGTAG
*
22709739 GACC-AGCAGCACGCAGAGGGGGACCGAGCCG
130 GACCGA-CAGCACGCAG-GGGGGACCGAGCCA
* * * * * * *
22709770 ATCATC-GGCTTGCGCATTATGCCTTTTCGGTCGGCTCAGTGCCCGCATGCTCGTTTCGTGGGTT
1 ATC-CCAAGCTTGCGCATTATACCTATCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
22709834 GACTTATGCATACGGAGTTCATTCCCA-ATCTAAG-ACCAGACTAGACCGAGGGTTGCGGCAGTA
65 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACTAGACCGAGGGTTGCGGCAGTA
* * * * *
22709897 GGATCGATAGCACGCAGGGGGGATCGGGCTA
129 GGACCGACAGCACGCAGGGGGGACCGAGCCA
* * *
22709928 ATCCCAAGCTTGCGCATTCTACCTATCCGGTCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTG
1 ATCCCAAGCTTGCGCATTATACCTATCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTG
*
22709993 GCTTAGGCATACGGAGTTTATTCCATGTCTAAGCA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
22710028 TACGGAGTTC
Statistics
Matches: 207, Mismatches: 43, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
157 4 0.02
158 93 0.45
159 103 0.50
160 7 0.03
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (159 bp):
ATCCCAAGCTTGCGCATTATACCTATCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACTAGACCGAGGGTTGCGGCAGTAGG
ACCGACAGCACGCAGGGGGGACCGAGCCA
Found at i:22710003 original size:158 final size:156
Alignment explanation
Indices: 22709532--22710025 Score: 462
Period size: 158 Copynumber: 3.1 Consensus size: 156
22709522 AAGCACATGA
* * * * * *
22709532 AGTTCATTCCCAGTCTAAGACCCA-ACTGGATCGAGAGTTGCGGTAGCAGGATTGGCAACACGCA
1 AGTTCATTCCCAGTCTAAGA-CCAGACTGGATCGAGGGTTGCGGCAGTAGGATCGACAGCACGCA
* * * * *
22709596 AGGGGGACTGAGG-TGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCACCCGCAC-
65 GGGGGGAC-G-GGCTGAT-CCCAGCTTGCGCATTCTGCCTATCCGGTCGGCTGAGCGCCCGCACG
* * *
22709659 ATCTATTTCGTGGGTTGGCTTAGGCATAGGG
127 CT-TGTTTCGTGGGTTGGCTTAGGCATACGG
* * * * *
22709690 AGTTCATT-CCATGTCTAAGCCCCAGTC-GGATCGAGGGTTGTGGCAGTGGGA-CCAGCAGCACG
1 AGTTCATTCCCA-GTCTAAG-ACCAGACTGGATCGAGGGTTGCGGCAGTAGGATCGA-CAGCACG
* * * * * * * * *
22709752 CAGAGGGGGACCGAGCCGATCATCGGCTTGCGCATTATGCCTTTTCGGTCGGCTCAGTGCCCGCA
63 CAG-GGGGGA-CGGGCTGATC-CCAGCTTGCGCATTCTGCCTATCCGGTCGGCTGAGCGCCCGCA
* * * *
22709817 TGCTCGTTTCGTGGGTTGACTTATGCATACGG
125 CGCTTGTTTCGTGGGTTGGCTTAGGCATACGG
* * * *
22709849 AGTTCATTCCCAATCTAAGACCAGACTAGACCGAGGGTTGCGGCAGTAGGATCGATAGCACGCAG
1 AGTTCATTCCCAGTCTAAGACCAGACTGGATCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAG
* *
22709914 GGGGGATCGGGCTAATCCCAAGCTTGCGCATTCTACCTATCCGGTCGGCTGAGCGCCCGCACGCT
66 GGGGGA-CGGGCTGATCCC-AGCTTGCGCATTCTGCCTATCCGGTCGGCTGAGCGCCCGCACGCT
22709979 TGTTTCGTGGGTTGGCTTAGGCATACGG
129 TGTTTCGTGGGTTGGCTTAGGCATACGG
*
22710007 AGTTTATT-CCATGTCTAAG
1 AGTTCATTCCCA-GTCTAAG
22710026 CATACGGAGT
Statistics
Matches: 264, Mismatches: 58, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
157 7 0.03
158 140 0.53
159 110 0.42
160 7 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (156 bp):
AGTTCATTCCCAGTCTAAGACCAGACTGGATCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAG
GGGGGACGGGCTGATCCCAGCTTGCGCATTCTGCCTATCCGGTCGGCTGAGCGCCCGCACGCTTG
TTTCGTGGGTTGGCTTAGGCATACGG
Found at i:22710028 original size:26 final size:26
Alignment explanation
Indices: 22709999--22710050 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22709989 GTTGGCTTAG
*
22709999 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22710025 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22710051 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22710488 original size:26 final size:26
Alignment explanation
Indices: 22710458--22710508 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
22710448 GTTGACTTAG
*
22710458 GCATACGGAGTTCGTCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22710484 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
22710509 GGATCAGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22710865 original size:158 final size:158
Alignment explanation
Indices: 22710484--22710984 Score: 564
Period size: 158 Copynumber: 3.2 Consensus size: 158
22710474 CCCAGTCTAA
* **
22710484 GCATACGGAGTTCATTCCCAGTCTAGGATCAGACTGGATCGAGGGTTGTGGCAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGGCAGCAGGATCGACA
* * * ** * *
22710549 GCACGC-AGGGGGATCGGGCCGATCCTCGGCCTGTGCATTCTGCCTCTCCGGTCGGTTGAGCACC
66 GCACGCAAGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
*
22710613 CGCACGCCCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** *
22710641 GCATAGGGAGTTCATT-CCATGTCTAAG-TCCCA-ACTGGATTGAGGGTTGTGGCAGTGGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGAT--CAGACTGGATCGAGGGTTGTGGCAGCAGGATCG
* * * *
22710703 ACAGCACGCGAAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCTGGTCGGCTCAG
63 ACAGCACGC-AAGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAG
* * *
22710768 CGCCCGCA-GCTCGTTTCATGGATTGACTTAG
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * ** *
22710799 GCATACAGAGTTCATTCCCAGTATAAGATTAGACTAGACCGAGGGTTGTGATAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGGCAGCAGGATCGACA
* ** *
22710864 GCACGCAGGGGGGGATCGGGTTGATCCCC-AGCTTACGCATTCTACCTCTCCGGTCGGCTGAGCG
66 GCACGCA-AGGGGGATCGGGCCGATCCCCGA-CTTACGCATTCTGCCTCTCCGGTCGGCTGAGCG
22710928 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* **
22710958 GTATACGGAGTTCATTCCTTGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
22710985 CATATGGAGT
Statistics
Matches: 281, Mismatches: 52, Indels: 20
0.80 0.15 0.06
Matches are distributed among these distances:
156 4 0.01
157 57 0.20
158 123 0.44
159 97 0.35
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAAGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:22711718 original size:26 final size:26
Alignment explanation
Indices: 22711681--22711733 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22711671 GTTGACTTAG
*
22711681 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
22711707 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
22711733 G
1 G
22711734 ATCAGACTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:22712173 original size:159 final size:157
Alignment explanation
Indices: 22711707--22712199 Score: 481
Period size: 159 Copynumber: 3.1 Consensus size: 157
22711697 CCCAGTCTAA
* ** *
22711707 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTTGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGACA
* * ** *
22711772 GCATGCA-GGGGGGATCGAGCTGATCCTCGGCTTGCTTATTCTGCCTCTCCGGTTGGCTAAGCAC
66 GCATGCAGGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGG-TGGCTAAGCGC
*
22711836 CCGCACGCCTGTTTTATGGGTT-AGCTTAG
130 CCGCACGCC-GTTTTGTGGGTTGA-CTTAG
*** ** * * * * *
22711865 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CCGGACTGAGGGTTGTGGCAGCGGGATCCA
1 GCATACAAAGTTCATTCCCA-GTCTAAGATC-AGACCAGACTGAGGGTTGCGACAGCAGGATCGA
* * * * * * * *
22711928 CAGCATGCAGAGAGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAGTCGGCTCAGT
64 CAGCATGCAGGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGT-GGCTAAGC
* * *
22711993 GCCTGCACGCTCATTTCGTGGGTTGACTTAG
128 GCCCGCACGC-CGTTTTGTGGGTTGACTTAG
* * *
22712024 GTATACAAAGTTCATTCCCAGTCTAAGGTCAGACCAGACTGAGGGTTGCGACAGCATGATCGACA
1 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGACA
* * * * ** *
22712089 GCACGCAGGGGGGGATCGGGCCGATCCTCGACTTACGCATTCTGTCTCTCCGGCTAACTGAGCGC
66 GCATGCAGGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGG-TGGCTAAGCGC
* *
22712154 CCGTACGCACGTTTTGTGGGTTGGCTTAG
130 CCGCACGC-CGTTTTGTGGGTTGACTTAG
*
22712183 GCATACAGAGTTCATTC
1 GCATACAAAGTTCATTC
22712200 AGTGTTTAAG
Statistics
Matches: 264, Mismatches: 62, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 57 0.22
159 198 0.75
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGACA
GCATGCAGGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTGGCTAAGCGCC
CGCACGCCGTTTTGTGGGTTGACTTAG
Found at i:22712586 original size:26 final size:26
Alignment explanation
Indices: 22712550--22712602 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22712540 GTGGACCTAG
22712550 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
22712576 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22712602 G
1 G
22712603 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22712616 original size:367 final size:353
Alignment explanation
Indices: 22712081--22712782 Score: 807
Period size: 367 Copynumber: 1.9 Consensus size: 353
22712071 GCGACAGCAT
** * * * * *
22712081 GATCGACAGCACGCAGGGGGGGATCGGGCCGATCCTCGACTTACGCATTCTGTCTCTCCGGCTAA
1 GATCGACAGCACGCAGAAGGGGATCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCAGCCAA
* * * * * ** * *
22712146 CTGAGCGCCCGTACGCACGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCAGTGTTTAAGG
66 CTGAGAGCCCGCACGCACGTTTTATGGGTTGGCCTAGGCATACAGAGTTCATCCACAGTCTAAGC
* * *
22712211 ATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGTGACAGCAGGACCAGCAGT
131 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGACC-G--GT
*
22712276 AGGATCGACAGCACGCACAGGGGGACCGGGCCAAT-CCTCGGCTTGTGAATTCTACCTCTTCGGC
193 A-G--C-AC-GC-CG----GGGGGACCGGGCCAATCCCT-GGCTTGTGAATTCTACCTCTTCGAC
** * * *
22712340 TGGCTGAGCGTCCGTACACTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTA
247 TGGCTGAGCACCCG--CACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
*
22712405 AGCCCCAGCCGGACCAAGGGTTGTGGTAGTAGGACTGGTAGCTG
310 AGCCCCAGCCAGACCAAGGGTTGTGGTAGTAGGACTGGTAGCTG
** * **
22712449 GATCGACAGCAC-CAGAAGGGGATCGGGTTGATCCCCGACTTGCGCATTATGCCTCTCCAGCCGG
1 GATCGACAGCACGCAGAAGGGGATCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCAGCCAA
* * *
22712513 CTGAGAGCCCGCACGCATGTTTTATGGG-TGGACCTAGGCATACGGAGTTCATCCCCAGTCTAAG
66 CTGAGAGCCCGCACGCACGTTTTATGGGTTGG-CCTAGGCATACAGAGTTCATCCACAGTCTAAG
* * *
22712577 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGATAGCAGGATCGGTAG
130 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGACCGGTAG
* * * * * * *
22712642 CACGCTGGGGGGATCGGGCCGATCCCTGGCTTGTGCATTTTGCCTCTTCGACTGGCTGAGTACCC
195 CACGCCGGGGGGACCGGGCCAATCCCTGGCTTGTGAATTCTACCTCTTCGACTGGCTGAGCACCC
* *
22712707 GCACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACC
260 GCACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACC
*
22712772 GAGGGTTGTGG
325 AAGGGTTGTGG
22712783 CAGCGGGACC
Statistics
Matches: 285, Mismatches: 47, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
352 68 0.24
354 46 0.16
355 3 0.01
358 1 0.00
359 2 0.01
360 2 0.01
361 1 0.00
363 1 0.00
364 3 0.01
366 4 0.01
367 142 0.50
368 12 0.04
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (353 bp):
GATCGACAGCACGCAGAAGGGGATCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCAGCCAA
CTGAGAGCCCGCACGCACGTTTTATGGGTTGGCCTAGGCATACAGAGTTCATCCACAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGACCGGTAGC
ACGCCGGGGGGACCGGGCCAATCCCTGGCTTGTGAATTCTACCTCTTCGACTGGCTGAGCACCCG
CACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCA
AGGGTTGTGGTAGTAGGACTGGTAGCTG
Found at i:22712917 original size:26 final size:26
Alignment explanation
Indices: 22712887--22712939 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22712877 GTTGACTTAT
22712887 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
22712913 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
22712939 G
1 G
22712940 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:22713417 original size:26 final size:26
Alignment explanation
Indices: 22713387--22713439 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22713377 GTTGGCTTAG
22713387 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22713413 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22713439 G
1 G
22713440 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22720057 original size:26 final size:26
Alignment explanation
Indices: 22720021--22720070 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
22720011 GAGTTAGGCG
22720021 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAGTCTAAGCA
* *
22720047 TACGGAGTTCATTCCCAGTTTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
22720071 ATCAGATTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCA
Found at i:22720403 original size:159 final size:158
Alignment explanation
Indices: 22720044--22720429 Score: 402
Period size: 159 Copynumber: 2.4 Consensus size: 158
22720034 CCCAGTCTAA
* * * * * *
22720044 GCATACGGAGTTCATTCCCAGTTTAAGATCAGATTGGACCAAGGGTTGTGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATTGGACCGAGGGTTGTGACAGCAGGACCGACA
* ** * * *
22720109 GCACGCAGGGGGGGACCGGGCCAATCCCCAGCTTGCACATTCTGCCTTTCCAGCCGGTTGAGCGC
66 GCACACAAAGGGGGACCGGGCCAATCCCCAGCTTGCACATTATGCCTTT-CAGCCGGCTCAGCGC
* *
22720174 CCGTACGCTCGTTTCATGGGTTGGCTTAT
130 CCGCACGCTCGTTTCATGGGTTGACTTAT
* ** * *
22720203 GCATAAGGAGTTCATT-CCATGTCTAAGCCCTAG-TTGGACCGAGGGTTGTGACTGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATTAGATTGGACCGAGGGTTGTGACAGCAGGACCGA
* * * *
22720266 CAGCACACAAAGGGGGACTGGGCCGATCCCCAGCTTGCGCATTATGCCTCCTT-GGCCGGCTCAG
64 CAGCACACAAAGGGGGACCGGGCCAATCCCCAGCTTGCACATTATGCCT--TTCAGCCGGCTCAG
*
22720330 TGCCCGCACGCTCGTTTCATGGGTTGACTT-T
127 CGCCCGCACGCTCGTTTCATGGGTTGACTTAT
* * * * ** * *
22720361 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGAACCGAAGGTTGCAATAGCAGGATCGAC
1 -GCATACGGAGTTCATTCCCAGTCTAAGATTAGATTGGACCGAGGGTTGTGACAGCAGGACCGAC
22720426 AGCA
65 AGCA
22720430 TGTAGGGGGG
Statistics
Matches: 183, Mismatches: 37, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
158 6 0.03
159 170 0.93
160 5 0.03
161 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTAGATTGGACCGAGGGTTGTGACAGCAGGACCGACA
GCACACAAAGGGGGACCGGGCCAATCCCCAGCTTGCACATTATGCCTTTCAGCCGGCTCAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAT
Found at i:22720555 original size:26 final size:26
Alignment explanation
Indices: 22720515--22720572 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 26
22720505 CATCAGTTGG
22720515 CTAAGGCATACGGAGTTCATTCC-ATGT
1 CTAA-GCATACGGAGTTCATTCCTA-GT
22720542 CTAAGCATACGGAGTTCATTCCTAGT
1 CTAAGCATACGGAGTTCATTCCTAGT
22720568 CTAAG
1 CTAAG
22720573 ATCAGACTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCTAGT
Found at i:22721341 original size:11 final size:11
Alignment explanation
Indices: 22721325--22721351 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
22721315 CCCGGGGCAC
22721325 CATCGTCGGAG
1 CATCGTCGGAG
22721336 CATCGTCGGAG
1 CATCGTCGGAG
22721347 CATCG
1 CATCG
22721352 CCGAAGAGCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:22722249 original size:158 final size:158
Alignment explanation
Indices: 22721961--22722631 Score: 510
Period size: 158 Copynumber: 4.2 Consensus size: 158
22721951 CCCAGTCTAA
* * * * ** * * *
22721961 GCATACAGAGTTCATTCCCAGTCTAAAATCAGATCGGACCGAGGGTTGC-GACAGCAGGATCGGC
1 GCATACGGAGTTCATTCCAAGTCTAAGACCCCAGCAGACCGAGGGTTGCAG-CAGCAGGATCGAC
** * * * * * * * * * * *
22722025 AGGACGCAGGGGGGATCAGGCCGATCCCTGGCTTGTGCATTTTGCCTCTCCGGCCGGCTGAGCGC
65 AACACGCAAGGGGAACCGGGCAGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTGAGCGC
* *
22722090 CCGCACGC-CTGCTTCGTGGGTTGGCTTAG
130 CCGCAAGCTC-GTTTCGTGGGTTGGCTTAG
* ** * ** *
22722119 GCATAGGGAGTTCATTCCAAGTC-AAG-CCCCAGCAGGACCGAGGGTTGTGGTAGTGGGATCGGC
1 GCATACGGAGTTCATTCCAAGTCTAAGACCCCAGCA-GACCGAGGGTTGCAGCAGCAGGATCGAC
* * * *
22722182 AGCACGCAGAGGGTAACCGGGCAGATCCCCGTCTTGCGCATTATGCCTCTTCGACCTGCTGAGCG
65 AACACGCA-AGGGGAACCGGGCAGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTGAGCG
* * * *
22722247 CCCGCATGCTCGTTTCATGGGTTGACTTAT
129 CCCGCAAGCTCGTTTCGTGGGTTGGCTTAG
* * ** *
22722277 GCATACGGAGTTCATTCCCAGTCTAAGATCTGATCAGACCGAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGACCCCAGCAGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * *
22722342 ACACGCAAGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCT
66 ACACGCAAGGGGAACCGGGCAGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTGAGCGCC
22722407 CGCAAGCTCGTTTCGTGGGTTGGCTTAG
131 CGCAAGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * *
22722435 GCATATGGAGTTCATTCCATGTGTAAG-CCATAGTCGGATCGAGTGTTGTGGCAGCAGGACCGAT
1 GCATACGGAGTTCATTCCAAGTCTAAGACCCCAG-CAGACCGAG-G--GTTGCAGCA-G--C---
* * * * *
22722499 AGCAGTATCGACAGCACGCAGAGGGG-ACCGGGCTGATCCTCGACTTGCGTATTATGCCTC-TCC
56 AG--G-ATCGACAACACGCA-AGGGGAACCGGGCAGATCCCCGACTTGCGCATTATGCCTCTTCG
* * * *
22722562 AGCCGGCTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
117 A-CCGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAG
* *
22722605 GCATACGGAGTTCATCCCCAGTCTAAG
1 GCATACGGAGTTCATTCCAAGTCTAAG
22722632 CATATAGAGT
Statistics
Matches: 408, Mismatches: 84, Indels: 30
0.78 0.16 0.06
Matches are distributed among these distances:
156 3 0.01
157 33 0.08
158 212 0.52
159 34 0.08
160 4 0.01
161 8 0.02
162 1 0.00
164 1 0.00
167 2 0.00
169 4 0.01
170 101 0.25
171 5 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAAGTCTAAGACCCCAGCAGACCGAGGGTTGCAGCAGCAGGATCGACA
ACACGCAAGGGGAACCGGGCAGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTGAGCGCC
CGCAAGCTCGTTTCGTGGGTTGGCTTAG
Found at i:22723143 original size:26 final size:26
Alignment explanation
Indices: 22723106--22723158 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22723096 GTTGGCTTAG
*
22723106 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
22723132 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22723158 G
1 G
22723159 ATTTTGAGCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22723869 original size:26 final size:26
Alignment explanation
Indices: 22723830--22723883 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
22723820 GGGTTGACTT
22723830 AGCATATAGGGTTCATCCCCAGTCTA
1 AGCATATAGGGTTCATCCCCAGTCTA
*
22723856 AGCATAT-GGAGTTCATTCCCAGTCTA
1 AGCATATAGG-GTTCATCCCCAGTCTA
22723882 AG
1 AG
22723884 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCATATAGGGTTCATCCCCAGTCTA
Found at i:22724162 original size:160 final size:158
Alignment explanation
Indices: 22723854--22724201 Score: 411
Period size: 160 Copynumber: 2.2 Consensus size: 158
22723844 ATCCCCAGTC
* *
22723854 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTGCGGCAGCAGGATCG
1 TAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTGCGACAGCAGGATCG
* * * * *
22723919 GCAGCACGCAAGGGTGACCGGACCGATCCCCGGCTTACACATTCTACGTCTTCGGTCGGCTGAGC
66 ACAGCACGCAAGGGGGACCGGACCGATCCCCGGCTTACACATTCTACCTCTCCGCTCGGCTGAGC
* *
22723984 ACCCGCATGCTCGTTTCGTGGGTCGGTT
131 ACCCGCATGCCCGTTTCGTGGGTCGGCT
* * *
22724012 TAAGCATACGGAGTTTATTCCCAGTCTAAGATC-GAACCAGA-CTGAGGGTTGCGACAGTC-GGA
1 TAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAG-ACCAAATC-GAGGGTTGCGACAG-CAGGA
* * * *
22724074 TCGACAGCCAC-CAGGGGGGGACCGGGCCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACT-G
63 TCGACAG-CACGCA-AGGGGGACC-GGACCGATCCCCGGCTTACACATTCTACCTCTCCG-CTCG
* *
22724137 GCTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCT
124 GCTGAGCACCCGCATGCCCGTTTCGTGGGTCGGCT
*
22724172 TAGGCATAAGGAGTTCATT-CCATGTCTAAG
1 TAAGCATAAGGAGTTCATTCCCA-GTCTAAG
22724202 CCCCAGTCGG
Statistics
Matches: 162, Mismatches: 20, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
157 2 0.01
158 60 0.37
159 14 0.09
160 85 0.52
161 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
TAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTGCGACAGCAGGATCG
ACAGCACGCAAGGGGGACCGGACCGATCCCCGGCTTACACATTCTACCTCTCCGCTCGGCTGAGC
ACCCGCATGCCCGTTTCGTGGGTCGGCT
Found at i:22724221 original size:160 final size:158
Alignment explanation
Indices: 22723854--22724242 Score: 394
Period size: 160 Copynumber: 2.4 Consensus size: 158
22723844 ATCCCCAGTC
* * * *
22723854 TAAGCATATGGAGTTCATTCCCAGTCTAAGA-TCAGACCAAATCGAGGGTTGCGGCAGCAGGATC
1 TAAGCATAAGGAGTTCATTCCCAGTCTAAGACCCA-ACCAGATCGAGGGTTGCGACAGCAGGATC
* * * * *
22723918 GGCAGCACGCAAGGGTGACCGGACCGATCCCCGGCTTACACATTCTACGTCTTCGGTCGGCTGAG
65 GACAGCACGCAAGGGGGACCGGACCGATCCCCGGCTTACACATTCTACCTCTCCGCTCGGCTGAG
* *
22723983 CACCCGCATGCTCGTTTCGTGGGTCGGTT
130 CACCCGCATGCCCGTTTCGTGGGTCGGCT
* * * *
22724012 TAAGCATACGGAGTTTATTCCCAGTCTAAGATCGAACCAGA-CTGAGGGTTGCGACAGTC-GGAT
1 TAAGCATAAGGAGTTCATTCCCAGTCTAAGACCCAACCAGATC-GAGGGTTGCGACAG-CAGGAT
* * * *
22724075 CGACAGCCAC-CAGGGGGGGACCGGGCCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACT-GG
64 CGACAG-CACGCA-AGGGGGACC-GGACCGATCCCCGGCTTACACATTCTACCTCTCCG-CTCGG
* *
22724138 CTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCT
125 CTGAGCACCCGCATGCCCGTTTCGTGGGTCGGCT
* * ** * * * * *
22724172 TAGGCATAAGGAGTTCATT-CCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCGGGACC
1 TAAGCATAAGGAGTTCATTCCCA-GTCTAAGACCCAACCAGATCGAGGGTTGCGACAGCAGGATC
22724236 GACAGCA
65 GACAGCA
22724243 TGTAGAGAAG
Statistics
Matches: 190, Mismatches: 31, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
157 1 0.01
158 58 0.31
159 18 0.09
160 111 0.58
161 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.21
Consensus pattern (158 bp):
TAAGCATAAGGAGTTCATTCCCAGTCTAAGACCCAACCAGATCGAGGGTTGCGACAGCAGGATCG
ACAGCACGCAAGGGGGACCGGACCGATCCCCGGCTTACACATTCTACCTCTCCGCTCGGCTGAGC
ACCCGCATGCCCGTTTCGTGGGTCGGCT
Found at i:22725094 original size:26 final size:26
Alignment explanation
Indices: 22725044--22725096 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22725034 GTTGGCTTAG
* *
22725044 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
22725070 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
22725096 G
1 G
22725097 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:22726087 original size:159 final size:152
Alignment explanation
Indices: 22725793--22726289 Score: 402
Period size: 159 Copynumber: 3.2 Consensus size: 152
22725783 CCTAGTATAA
* * * * * *
22725793 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGAT-CGGATCAAGGGTTGCGACAGCAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCGG-TCCAGACCAAGGGTTGTGGCAGCAGGACCG
* * * * *
22725855 ACAGCACGTAGGGGGCACCGGGCCGAT-CCCCAGCTTGCGCATTCTACCTCTTCGGCCTGCTGAG
64 ACAGCACGCAGGGGGGACCAGGCCGATGCCCGA-CTTGCGCATTCTACCTC-T---CCGGC--A-
22725919 CGGCCCGCACGCCCATTTCGTGGGTTGGCTTAG
121 -GGCCCGCACGCCCATTTCGTGGGTTGGCTTAG
* * ** ** * *
22725952 GCATAGGGAGTTCATTCCATGTCTAAGCCCCGG-CTGGACTGAGGGTTGTGGCAGCCGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCGGTCCAGACCAAGGGTTGTGGCAGCAGGACCGAC
* * * * * *
22726016 AGCACGTAGAGGGGGACCGGGCTGAT-CCCTGGCTTGCGCGTTAC-GCCTCTCCAGTCGGCTCAG
66 AGCACGCAG-GGGGGACCAGGCCGATGCCC-GACTTGCGCATT-CTACCTCT-C---CGG--CAG
* * *
22726079 CGCCCGCACGCTCATTTCGTTGGTTGACTTAG
122 -GCCCGCACGCCCATTTCGTGGGTTGGCTTAG
* * *
22726111 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCGGTCCAGACCAAGGGTTGTGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCGGTCCAGACCAAGGGTTGTGGCAGCAGGACCGA
* * * *
22726174 CAGCATGCAGGGGGGACCAGGCCGGTGCCCGACTTGCGCATTCTACCTCTCCGGCAGG-CTGAAC
65 CAGCACGCAGGGGGGACCAGGCCGATGCCCGACTTGCGCATTCTACCTCTCCGGCAGGCCCGCAC
*
22726238 GCCCGTTTCGTGGGTTGGCTTAG
130 GCCCATTTCGTGGGTTGGCTTAG
22726261 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
22726290 TACGAATTTC
Statistics
Matches: 271, Mismatches: 49, Indels: 44
0.74 0.13 0.12
Matches are distributed among these distances:
149 3 0.01
150 45 0.17
151 2 0.01
152 3 0.01
154 3 0.01
157 3 0.01
158 35 0.13
159 136 0.50
160 39 0.14
161 1 0.00
162 1 0.00
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (152 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCGGTCCAGACCAAGGGTTGTGGCAGCAGGACCGAC
AGCACGCAGGGGGGACCAGGCCGATGCCCGACTTGCGCATTCTACCTCTCCGGCAGGCCCGCACG
CCCATTTCGTGGGTTGGCTTAG
Found at i:22726300 original size:26 final size:26
Alignment explanation
Indices: 22726261--22726312 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22726251 GTTGGCTTAG
*
22726261 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
*
22726287 GCATACGAATTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
22726313 TAGTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:22729133 original size:26 final size:26
Alignment explanation
Indices: 22729104--22729154 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
22729094 CGGTCCAATC
22729104 TAGACT-GGGAATGAACTCCGTATGCT
1 TAGACTAGGG-ATGAACTCCGTATGCT
*
22729130 TAGACTAGGGATGAACTTCGTATGC
1 TAGACTAGGGATGAACTCCGTATGC
22729155 ATAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTAGGGATGAACTCCGTATGCT
Found at i:22729851 original size:26 final size:26
Alignment explanation
Indices: 22729822--22729872 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
22729812 CCGATCTGAT
**
22729822 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACACGGAATGAACTCCGTATC
* *
22729848 CTTAGACACTGAATGAACTCTGTAT
1 CTTAGACACGGAATGAACTCCGTAT
22729873 GCCTAAGCCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATC
Found at i:22730195 original size:159 final size:157
Alignment explanation
Indices: 22729847--22730341 Score: 480
Period size: 158 Copynumber: 3.1 Consensus size: 157
22729837 AACTCCGTAT
* * *
22729847 CCTTAGACACT-GAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGTGCGTGCGGGCGCTCA
1 CCTTAGACA-TGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * ** *
22729911 GCTAGCCGGAGAGATAGAATGCGTAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
64 GCCAACCGGAGAGGTAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
* * * *
22729976 ATGCTGTCGCAACCCTCAGTCTGGTCTGA
129 ACGCTGCCACAACCCTCAGTCCGGTCTGA
* * * * *
22730005 CCTTAGAC-TAGGAATGAGCTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTGA
1 CCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * *
22730069 GCCGACTGGAGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGAT
64 GCCAACCGGAGAGGTAGAATGCACAAGCCGAGGATCGGCCCGATCCCCC-CTGCGTGCTGTCGAT
* *
22730134 CCCGCTGCCACAACCCTCAGTCCGG-CTAGG
128 CACGCTGCCACAACCCTCAGTCCGGTCT-GA
* * * * *
22730164 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAAT-AGGCGTGCGAGTGCTTA
1 CCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAATGA-GCGTGCGGGCGCTCA
* * *
22730228 GCCAACCGGAGAGGTAGAAT-AAGCAAGCCGAGGATCAGTCCGATCCCCCCTGCGTGCTGTCGAT
64 GCCAACCGGAGAGGTAGAATGCA-CAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGAT
** * * * ** *
22730292 CGTGCTGTCGCAACCCTCGGTCAAGTCTAA
128 CACGCTGCCACAACCCTCAGTCCGGTCTGA
*
22730322 TCTTAGAC-TGGGAATGAACT
1 CCTTAGACAT-GGAATGAACT
22730342 TCATATGCTT
Statistics
Matches: 274, Mismatches: 53, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
156 1 0.00
157 1 0.00
158 145 0.53
159 126 0.46
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
CCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CAACCGGAGAGGTAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCAC
GCTGCCACAACCCTCAGTCCGGTCTGA
Found at i:22731296 original size:158 final size:157
Alignment explanation
Indices: 22731072--22731573 Score: 593
Period size: 158 Copynumber: 3.2 Consensus size: 157
22731062 ACTCCATATG
** * *
22731072 CTTAGACAAGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * *
22731137 CGACCGGAGAGGCAAAATGCACAAGCTGGGGATCAGCCCGATCCCCCCTGCATGCTGTCAATCCT
66 CGACCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTGC-TGCTGTCGATCCT
* *
22731202 ACTGTCACAACCCTCGGTCTAGTCTGAT
130 ACTGCCACAACCCTCGGTCCAGTCTGAT
* * * *
22731230 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAATCCACGAAATGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * *
22731295 CGACCGGAGAGGCATAATACGCAAG-TCGGGGATCGGCCCGATCCCGCTCCGTG-TGCTGTCGGT
66 CGACCGGAGAGGCAAAATGCGCAAGCT-GGGGATCGGCCCGATCCC-C-CC-TGCTGCTGTCGAT
* *
22731358 CCCACTGCCACAACCCTCGATCCAGT-TGGGA-
127 CCTACTGCCACAACCCTCGGTCCAGTCT--GAT
* *
22731389 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACT-AGCGTGCGGGTGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TGAGCGTGCGGGCGCTCA
* * * * * * * **
22731452 GCCGGCAGGAGAGGCAGAATGCGCAGGCCGAGGATCGGCCTGATCCCCCCTGCGTGCTACCGATC
64 GCCGACCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTGC-TGCTGTCGATC
*
22731517 CTGCTGCCACAACCCTCGGTCCAGTCTGAT
128 CTACTGCCACAACCCTCGGTCCAGTCTGAT
*
22731547 CCTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
22731574 TTAGATTGGG
Statistics
Matches: 292, Mismatches: 38, Indels: 28
0.82 0.11 0.08
Matches are distributed among these distances:
156 2 0.01
157 6 0.02
158 153 0.52
159 123 0.42
160 6 0.02
161 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTGCTGCTGTCGATCCTA
CTGCCACAACCCTCGGTCCAGTCTGAT
Found at i:22731588 original size:26 final size:26
Alignment explanation
Indices: 22731549--22731599 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
22731539 AGTCTGATCC
22731549 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
* * *
22731575 TAGATTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
22731600 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:22732449 original size:159 final size:159
Alignment explanation
Indices: 22732022--22732452 Score: 464
Period size: 159 Copynumber: 2.7 Consensus size: 159
22732012 AACTCCGTAT
*
22732022 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACA-AGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGCGCTCA
* * * *
22732086 GCCGACCGGATAGGTAGAATGCGTAAGCTTG-GGATCGGCCCGATCCCCC-CTGCGTGCTGTCGA
66 GCCGACCGGAAAGGCAGAATGCGCAAGC-TGAGGATCGGCCCG-TCCCCCTCTGCATGCTGTCGA
* ** * *
22732149 TCCTACTACCGTAACCCTCGGTCTAGTCTGG
129 TCCCACTACCACAACCCTCGATCTAGACTGG
* * * * * * *
22732180 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAA-TGAGCGTGCAGGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGCGCTC
* * * * * *
22732243 AGCCGACCGAAAAGGCATAATGCGCAAGCCGATGATCGGCCCGGTCCCCCTCTGCATGCTGTTGG
65 AGCCGACCGGAAAGGCAGAATGCGCAAGCTGAGGATCGGCCC-GTCCCCCTCTGCATGCTGTCGA
* * *
22732308 TCCCGCTGCCACAACCCTCGATC-CGACTGGG
129 TCCCACTACCACAACCCTCGATCTAGACT-GG
* *
22732339 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGA-TGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGCGCTCA
* * *
22732403 ACCGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATC-GCCTCAGTCCCCCT
66 GCCGACCGGAAAGGCAGAATGCGCAAGCTGAGGATCGGCC-C-GTCCCCCT
22732453 TACGTGTTGC
Statistics
Matches: 221, Mismatches: 43, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
157 2 0.01
158 97 0.44
159 119 0.54
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGCGCTCA
GCCGACCGGAAAGGCAGAATGCGCAAGCTGAGGATCGGCCCGTCCCCCTCTGCATGCTGTCGATC
CCACTACCACAACCCTCGATCTAGACTGG
Found at i:22732506 original size:951 final size:954
Alignment explanation
Indices: 22730654--22732567 Score: 2818
Period size: 951 Copynumber: 2.0 Consensus size: 954
22730644 TTTGTCCCCA
*
22730654 AATTTGGTAGAGGTGATCCCTATATTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCAA
1 AATTTGGTAGAGGTGATCCCTATATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
* * * *
22730719 AGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTGCTG
66 AGTCGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTA
* * *
22730784 GCAGCAAACCTATAAAATGTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGG
131 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAAGG
* * *
22730849 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGTGCACACCCCCCGG
196 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGA
* *
22730914 CCCCCCCAATCGCCGGAATCCCCAATGCCGCCGATTAGGCTCTCCGGCGATGCTTCTATGATGGT
261 CCCCCCCAATCACCGGAACCCCCAATGCCGCCGATTAGGCTCTCC-GCGA-G----T-TGATGGT
* * * *
22730979 GCCCCGGGCGAAAAAAATGCGGCACCAGTACATGCCCGAGCCCAGCATGTGCACCGTGGCTCAAA
319 GCCCCAGGCGAAAAAAATGCGGCACCAGCAAATGCCCGAGCCCAGCATGTGCACCATGGCTCAAA
* * *
22731044 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACAAGGAATGAACTCTGTATGCCTAAGCCAAC
384 ATATTAGACTGGGAATGAACTCCATATGCTTAGACAAGGAATAAACTCCGTATGCCTAAGCCAAC
*
22731109 CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAAAATGCACAAGCTGGGGATCAGC
449 CCACGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAAAATGCACAAGCTGGGGATCAGC
**
22731174 CCGATCCCCCCTGCATGCTGTCAATCCTACTGTCACAACCCTCGGTCTAGTCTGATCTTAGACTG
514 CCGATCCCCCCTGCATGCTGTCAATCCTACTACCACAACCCTCGGTCTAGTCTGATCTTAGACTG
* * * * * * *
22731239 GGAATGAACTCTGTATGCCTAAGTCAATCCACGAAATGAGCGTGCGGGCGCTGAGCCGACCGGAG
579 GGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCAGGCACTGAGCCGACCGAAA
* * * **
22731304 AGGCATAATACGCAAGTCGGGGATCGGCCCGATCCCGCTCCGTGTGCTGTCGGTCCCACTGCCAC
644 AGGCATAATACGCAAGCCGAGGATCGGCCCGATCCCCCTCCGCATGCTGTCGGTCCCACTGCCAC
*
22731369 AACCCTCGATCCAGTTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
709 AACCCTCGATCCAGCTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * *
22731434 CTAGCGTGCGGGTGCTCAGCCGGCAGGAGAGGCAGAATGCGCAGGCCGAGGATCGGCCTGATCCC
774 CTAGCGTGCGGGCGCTCAACCGGCAGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCTCATCCC
* * * *
22731499 CCCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCAGTCTGATCCTAGACTGGGAATGAA
839 CCCTACGTGCTACCAATCCTGCTACCACAACCCTCGATCCAGTCTGATCCTAGACTGGGAATGAA
* *
22731564 CTCCGTATGCTTAGATTGGGGATGAACTCTGTATGCCTAAGTCAACCCACG
904 CTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACG
* * * *
22731615 AATTTGGTAGAGGTGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGA
1 AATTTGGTAGAGGTGATCCCTATATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
*
22731680 AGTCGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTAT-GGACACTTTAATGGCTACT
66 AGTCGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATT-TCAGACACTTTAATGGCTACT
*
22731744 AGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
130 AGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAAG
*
22731809 GATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCG
195 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * *
22731874 ACCCCCTCAATCACCGGAACCCCCAATGCCGCCGGTTAGGCTCT-C-CG-G-TGATGGTGCCTCA
260 ACCCCCCCAATCACCGGAACCCCCAATGCCGCCGATTAGGCTCTCCGCGAGTTGATGGTGCCCCA
*
22731935 GGCGAAAAAGAATGCGGCACCAGCAAATGCTCGAGCCCAGCATGTGCACCATGGCTCAAAATATT
325 GGCGAAAAA-AATGCGGCACCAGCAAATGCCCGAGCCCAGCATGTGCACCATGGCTCAAAATATT
* * *
22732000 AGATTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACG
389 AGACTGGGAATGAACTCCATATGCTTAGACAAGGAATAAACTCCGTATGCCTAAGCCAACCCACG
* * * ** * *
22732065 AAACAAGCGTGCGGGCGCTCAGCCGACCGGATAGGTAGAATGCGTAAGCTTGGGATCGGCCCGAT
454 AAACAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAAAATGCACAAGCTGGGGATCAGCCCGAT
* * ** *
22732130 CCCCCCTGCGTGCTGTCGATCCTACTACCGTAACCCTCGGTCTAGTCTGGTCTTAGACTGGGAAT
519 CCCCCCTGCATGCTGTCAATCCTACTACCACAACCCTCGGTCTAGTCTGATCTTAGACTGGGAAT
22732195 GAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCAGGCACTGAGCCGACCGAAAAGGCA
584 GAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCAGGCACTGAGCCGACCGAAAAGGCA
* * * * * *
22732260 TAATGCGCAAGCCGATGATCGGCCCGGTCCCCCTCTGCATGCTGTTGGTCCCGCTGCCACAACCC
649 TAATACGCAAGCCGAGGATCGGCCCGATCCCCCTCCGCATGCTGTCGGTCCCACTGCCACAACCC
*
22732325 TCGATCC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AG
714 TCGATCCAG-CTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACTAG
* * *
22732388 ATGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATC-GCCTCAGTCCCCC
778 -CGTGCGGGCGCTCAACCGGCAGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCTCA-TCCCCC
* * * ** * * *
22732452 TTACGTGTTGCCAATCCTGCTACTGCAACTCTCGATCCAGTTTGATCTTAGACTGGGAATGAACT
841 CTACGTGCTACCAATCCTGCTACCACAACCCTCGATCCAGTCTGATCCTAGACTGGGAATGAACT
* * * *
22732517 TCTTGTGCTTAGACTGGGGATGAACTCCGTATGCCTAATTCAACCCACG
906 CCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACG
22732566 AA
1 AA
22732568 ACGAGCGTGC
Statistics
Matches: 854, Mismatches: 94, Indels: 20
0.88 0.10 0.02
Matches are distributed among these distances:
950 28 0.03
951 542 0.63
956 1 0.00
958 2 0.00
960 1 0.00
961 279 0.33
962 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (954 bp):
AATTTGGTAGAGGTGATCCCTATATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
AGTCGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTA
GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAAGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGA
CCCCCCCAATCACCGGAACCCCCAATGCCGCCGATTAGGCTCTCCGCGAGTTGATGGTGCCCCAG
GCGAAAAAAATGCGGCACCAGCAAATGCCCGAGCCCAGCATGTGCACCATGGCTCAAAATATTAG
ACTGGGAATGAACTCCATATGCTTAGACAAGGAATAAACTCCGTATGCCTAAGCCAACCCACGAA
ACAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAAAATGCACAAGCTGGGGATCAGCCCGATCC
CCCCTGCATGCTGTCAATCCTACTACCACAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGA
ACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCAGGCACTGAGCCGACCGAAAAGGCATA
ATACGCAAGCCGAGGATCGGCCCGATCCCCCTCCGCATGCTGTCGGTCCCACTGCCACAACCCTC
GATCCAGCTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACTAGCGT
GCGGGCGCTCAACCGGCAGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCTCATCCCCCCTACG
TGCTACCAATCCTGCTACCACAACCCTCGATCCAGTCTGATCCTAGACTGGGAATGAACTCCGTA
TGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACG
Found at i:22733260 original size:159 final size:157
Alignment explanation
Indices: 22732901--22733347 Score: 481
Period size: 159 Copynumber: 2.8 Consensus size: 157
22732891 AACTCCATAT
* * * * * *
22732901 GCTTAGACATGAAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGAGCAGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
22732966 TCAGTCAGAGAGGCAGAATGCGTATGCTGGGGATCGACCCGGT-CCCCCTACGTGCTGTCAATCC
66 CCAGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
* * *
22733030 TGTGGCTGCAACCCTCGGTCTGGTCTGA
131 TGTGCCTG-AACCCTCGGTCTCGACTGA
* * * * * *
22733058 TCTTATAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCCTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
** * * *
22733122 GCCTTTCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGAT
65 GCCAGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTACGTGCTGTCGAT
*
22733187 -CTCGCTGCCATG-ACCCTCGGTC-CGACTGGG
129 CCT-G-TGCC-TGAACCCTCGGTCTCGACT-GA
* *
22733217 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
22733282 CCAGTCGAAGAGGCAAAATGCGCAAGTCGGGGATCGACCCGATCCCACCTACGTGCTATCGATCC
66 CCAGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
22733347 T
131 T
22733348 ACATCGCAAC
Statistics
Matches: 237, Mismatches: 44, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
156 1 0.00
157 86 0.36
158 22 0.09
159 122 0.51
160 4 0.02
161 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
TGTGCCTGAACCCTCGGTCTCGACTGA
Found at i:22733411 original size:26 final size:26
Alignment explanation
Indices: 22733375--22733427 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22733365 TCGGTCCGAT
22733375 CTTAGACTGGGAATGAACTTC-ATATG
1 CTTAGACTGGGAATGAAC-TCAATATG
*
22733401 CTTAGACTGGGGATGAACTCAATATG
1 CTTAGACTGGGAATGAACTCAATATG
22733427 C
1 C
22733428 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAATATG
Found at i:22736165 original size:26 final size:27
Alignment explanation
Indices: 22736136--22736193 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 27
22736126 TCGGTCCAAT
22736136 CTTAGACTAGGAATGAACTCCATATG-
1 CTTAGACTAGGAATGAACTCCATATGC
* *
22736162 CTTAGACTAGGGATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCATATGC
22736189 CTTAG
1 CTTAG
22736194 TCAACCCACG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (27 bp):
CTTAGACTAGGAATGAACTCCATATGC
Found at i:22736716 original size:159 final size:157
Alignment explanation
Indices: 22736360--22736816 Score: 370
Period size: 159 Copynumber: 2.9 Consensus size: 157
22736350 TCTGTATGCT
* * * *
22736360 TAGACAT-GAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCG
* * * * ** * * * * * * **
22736424 GTCGAAGAGGTAGAATGCACAAGCCAGGTACCGAC-CAGAT-CCCCTACGTGCTATCGATCCTGC
66 GCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTC-GGTCCCCCTGCGTGCTGTCGATCCCAC
* ** * * * ** *
22736487 TGTCGCAACCCTCGGCCCGATCT-GATCT
130 TGCCATAACCCTCGGTCTG-GCTGGGGCG
* ** ** * * * *
22736515 TATAC-TGGGAATGAACTCTGTATGCCTAAGTTAACCCACGAAACGAGCGTTCGGGCGTTGAGCC
1 TAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCC
* *
22736579 GGCCGGAGAGGCATAATGCGTAAGCCT-GGGATCGGC-CTGGTCCCCCTCTGCGTGCTGTCGATC
65 GGCCGGAGAGGCAGAATGCGCAAG-CTGGGGATCGGCTC-GGT-CCCC-CTGCGTGCTGTCGATC
22736642 CCACTGCCATAACCCTCGGTCTGGCTGGGGCG
126 CCACTGCCATAACCCTCGGTCTGGCTGGGGCG
* * * *
22736674 TAGACATGGAATGAACTCCCTATGGCTAAGCCAACCTACGAAACGGGCATGCGGGCGCTCAGTCG
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCG
* * * *
22736739 GTCGGAGAGGCAGAATGCGCAAGCTGGGGATTGGCTCGGTCCCCCTGTGTGCTGTCGATCCTACT
66 GCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCTGCGTGCTGTCGATCCCACT
* *
22736804 GTCGTAACCCTCG
131 GCCATAACCCTCG
22736817 ATCCAGTCTG
Statistics
Matches: 238, Mismatches: 54, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
154 1 0.00
155 4 0.02
156 76 0.32
157 31 0.13
158 11 0.05
159 113 0.47
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCG
GCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCTGCGTGCTGTCGATCCCACT
GCCATAACCCTCGGTCTGGCTGGGGCG
Found at i:22737243 original size:26 final size:26
Alignment explanation
Indices: 22737205--22737257 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22737195 CCAGTCTGAT
*
22737205 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22737231 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22737257 C
1 C
22737258 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22737574 original size:159 final size:158
Alignment explanation
Indices: 22737230--22737732 Score: 432
Period size: 158 Copynumber: 3.2 Consensus size: 158
22737220 AACTTCGTAT
* *
22737230 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC-GAAATAAGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC-CTGAAATGAGCGTACGGGTGCTCA
* * * * * * * * *
22737294 GCCGACAGGAGAGGCAGAATGCGCAA-ACGGGGACCGACGCGGTCCCTCCCTGCGTGCTGTCGAT
65 ACGGTC-GGAGAGGCAGAATGCGCAAGCCGGGGACAGACCCGATCCCTCCCTACGTGCTGCCGAT
* *
22737358 CCCGCTACCGTAACCCTCGATCCGATCCGA
129 CCCACTACCATAACCCTCGATCCGATCCGA
* * * *
22737388 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCCTGAAATGAGCGTACGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCCTGAAATGAGCGTACGGGTGCTCA
* * *
22737452 ACAGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAG-CCCGATCCCTCTCTATGTGCTGCC-A
65 AC-GGTCGGAGAGGCAGAATGCGCAAGCCGGGGA-CAGACCCGATCCCTCCCTACGTGCTGCCGA
* * ** *
22737515 GTCCCACTACCATAACCCTC-AGTCTGGTTGGG
128 -TCCCACTACCATAACCCTCGA-TCCGATCCGA
* * * **
22737547 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA-CCCTCGAAACGGGCGTACGGACGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCCT-GAAATGAGCGTACGGGTGCTCA
* * ** ** * * **
22737611 GTCGATCGGAGAGGCAGAATGCGCAAGCCAAGGATTGACCC-ATTCCC-CCCTGCATGCTATCGA
65 -ACGGTCGGAGAGGCAGAATGCGCAAGCCGGGGACAGACCCGA-TCCCTCCCTACGTGCTGCCGA
* * * *
22737674 TCCTACTGCCATAACCCTCGATCCTATCTGA
128 TCCCACTACCATAACCCTCGATCCGATCCGA
*
22737705 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
22737733 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 57, Indels: 30
0.76 0.16 0.08
Matches are distributed among these distances:
157 3 0.01
158 134 0.49
159 132 0.48
160 4 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCCTGAAATGAGCGTACGGGTGCTCAA
CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGACAGACCCGATCCCTCCCTACGTGCTGCCGATCC
CACTACCATAACCCTCGATCCGATCCGA
Found at i:22737747 original size:26 final size:26
Alignment explanation
Indices: 22737706--22737758 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22737696 CCTATCTGAT
22737706 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
22737732 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22737758 C
1 C
22737759 CTAATTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22738227 original size:26 final size:26
Alignment explanation
Indices: 22738191--22738240 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
22738181 GGGGGCGCTC
*
22738191 AGACATGGAATGAACTTCGTATGCTT
1 AGACATGGAATGAACTCCGTATGCTT
22738217 AGACATGGAATGAACTCCGTATGC
1 AGACATGGAATGAACTCCGTATGC
22738241 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (26 bp):
AGACATGGAATGAACTCCGTATGCTT
Found at i:22738581 original size:25 final size:26
Alignment explanation
Indices: 22738531--22738582 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
22738521 CCAGTCTGAT
* **
22738531 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
22738557 CTTAGACTAGG-ATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
22738582 C
1 C
22738583 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:22739291 original size:26 final size:26
Alignment explanation
Indices: 22739253--22739305 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22739243 GGCTCAAACT
22739253 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22739279 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22739305 C
1 C
22739306 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22739626 original size:26 final size:26
Alignment explanation
Indices: 22739596--22739648 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22739586 CTGATCCGAT
*
22739596 CTTAGACTGGGAATGATCTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
22739622 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
22739648 C
1 C
22739649 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:22739836 original size:26 final size:26
Alignment explanation
Indices: 22739807--22739859 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22739797 CCAGTCCGAT
22739807 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
22739833 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
22739859 C
1 C
22739860 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22747669 original size:159 final size:159
Alignment explanation
Indices: 22747377--22747762 Score: 361
Period size: 159 Copynumber: 2.4 Consensus size: 159
22747367 CCCCCCCTGC
* * * *
22747377 GTGCTGTCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTTCAT
1 GTGCTGTCGATCCCGCTACCACAACCCTCAGTCTGGTCTGAGCTTAGACTGGGAATGAACTCCAT
* * * * * *
22747442 ATGCATAAGTCAACCCACAAAATGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGCGCA
66 ATGCATAAGCCAACCCACAAAATGAGCATGCGGGCGCTCAGCCGACAGAAGAGGCAAAATGCACA
22747507 AGCC-GAGGATCGGCATAGTCCCCCTTTGT
131 AGCCAG-GGATCGGCATAGTCCCCCTTTGT
* * * *
22747536 GTGCTGTCGGTCCCGCTGCCACAACCCTCTGTCTGG-CTGGGGCTTAGACAT-GGAATGAACTCC
1 GTGCTGTCGATCCCGCTACCACAACCCTCAGTCTGGTCT-GAGCTTAGAC-TGGGAATGAACTCC
* * * * * * *
22747599 CTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCGCTCAGCCGATAGGAGAGGCAAAATTCA
64 ATATGCATAAGCCAACCCACAAAATGAGCATGCGGGCGCTCAGCCGACAGAAGAGGCAAAATGCA
* ** * *
22747664 TAAGCCAGGGATCGGC-CCGATCCCCC-CTGC
129 CAAGCCAGGGATCGGCATAG-TCCCCCTTTGT
* * ** * * * * * *
22747694 GTGCTATCGATCCTGCTGTCGCAACCCTCGGTCCGAT-TCGATCTTAGACTGGGAATGAACTCCG
1 GTGCTGTCGATCCCGCTACCACAACCCTCAGTCTGGTCT-GAGCTTAGACTGGGAATGAACTCCA
22747758 TATGC
65 TATGC
22747763 TTAGAATGAG
Statistics
Matches: 183, Mismatches: 38, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
157 1 0.01
158 59 0.32
159 121 0.66
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (159 bp):
GTGCTGTCGATCCCGCTACCACAACCCTCAGTCTGGTCTGAGCTTAGACTGGGAATGAACTCCAT
ATGCATAAGCCAACCCACAAAATGAGCATGCGGGCGCTCAGCCGACAGAAGAGGCAAAATGCACA
AGCCAGGGATCGGCATAGTCCCCCTTTGT
Found at i:22748145 original size:26 final size:26
Alignment explanation
Indices: 22748103--22748155 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22748093 CCAGTCCGAT
*
22748103 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
*
22748129 CTTAGACAT-GGATTGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCTATATG
22748155 C
1 C
22748156 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:22749730 original size:159 final size:159
Alignment explanation
Indices: 22749402--22749805 Score: 379
Period size: 159 Copynumber: 2.5 Consensus size: 159
22749392 CGGTCGAAGA
* * ** *
22749402 GGCCCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCAGTCTGGTCTGATCTTAG
1 GGCCCGGTCCCCCCCTGCGTGCTGCCGATCCCGCTACCACAACCCTCAGTCTGGTCTGAGCTTAG
* * * *
22749467 ACTGGGAATGAACTTCATATGCATAAGTCAACCCACAAAATGAGCGTGCGGGCGCTGAGCCGACC
66 ACTGGGAATGAACTCCATATGCATAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGACA
*
22749532 GAAGAGGCATAATGCGCAAGCCGAGGATC
131 GAAGAGGCAGAATGCGCAAGCCGAGGATC
*** * * * * * *
22749561 GGCATAGTCCCCCTCTGTGTGCTGCCGGTCCCGCTGCCACAACCCTCTGTCTGG-CTGGGGCTTA
1 GGCCCGGTCCCCCCCTGCGTGCTGCCGATCCCGCTACCACAACCCTCAGTCTGGTCT-GAGCTTA
* * * *
22749625 GACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG-GACGTGCGGGTGCTCAGCCA
65 GAC-TGGGAATGAACTCCATATGCATAAGCCAACCCACAAAATGAG-CGTGCGGGCGCTCAGCC-
* * *
22749688 GTCAG-AGAGGTAGAATGCGTAAGCC-AGGGATC
127 GACAGAAGAGGCAGAATGCGCAAGCCGA-GGATC
* * ** * ** * * * *
22749720 GGCCCGGT-CCCCCCTGCGTTCTGTCGATCTTGCTGCCGGAACCCTCGGTCTGATCCGATCTTAG
1 GGCCCGGTCCCCCCCTGCGTGCTGCCGATCCCGCTACCACAACCCTCAGTCTGGTCTGAGCTTAG
*
22749784 ACTGGGAATGAACTCCGTATGC
66 ACTGGGAATGAACTCCATATGC
22749806 TTACACTGGG
Statistics
Matches: 194, Mismatches: 44, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.01
158 63 0.32
159 126 0.65
160 4 0.02
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.21
Consensus pattern (159 bp):
GGCCCGGTCCCCCCCTGCGTGCTGCCGATCCCGCTACCACAACCCTCAGTCTGGTCTGAGCTTAG
ACTGGGAATGAACTCCATATGCATAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGACA
GAAGAGGCAGAATGCGCAAGCCGAGGATC
Found at i:22749808 original size:26 final size:26
Alignment explanation
Indices: 22749779--22749909 Score: 156
Period size: 26 Copynumber: 5.0 Consensus size: 26
22749769 CTGATCCGAT
22749779 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
22749805 CTTACACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22749831 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * **
22749857 CCTAGACTGGGAAGGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
22749883 CTTAGCCAT-TGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22749909 C
1 C
22749910 CTAAGCCAAC
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 90 0.99
27 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22750378 original size:26 final size:26
Alignment explanation
Indices: 22750356--22750428 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
22750346 CTAAGACTTC
22750356 GAATGAACTCCATATGCTTAGACTGG
1 GAATGAACTCCATATGCTTAGACTGG
* * *
22750382 GGATGAACTCCGTATGCCTAGACTGG
1 GAATGAACTCCATATGCTTAGACTGG
* *
22750408 GAAGGAACTCTATATGCTTAG
1 GAATGAACTCCATATGCTTAG
22750429 CCATTGAATG
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
GAATGAACTCCATATGCTTAGACTGG
Found at i:22750839 original size:541 final size:541
Alignment explanation
Indices: 22749402--22751494 Score: 2694
Period size: 541 Copynumber: 3.8 Consensus size: 541
22749392 CGGTCGAAGA
* * ** ** * *
22749402 GGCCCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCAGTCTGGTCTGATCTTAG
1 GGCCCGGT-CCCCTCTGTGTGCTGTCGATCCTGCTGTCACAACCCTCAGTCTGGTCCGATGTTAG
** * * * * *
22749467 ACTGGGAATGAACTTCATATGCATAAGTCAACCCA-CAAAATGAGCGTGCGGGCGCTGAGCCGAC
65 AC-GAAAATGAACTCCATATGCATAAGTCAACCCATGAAACT-AGCGTGCGGGTGCTGAGCCGGC
* * * * * ** * * ** * *
22749531 CGAAGAGGCATAATGCGCAAGCCGAGGATC-GGCATAGTCCCCCTCTGTGTGCTGCCGGTCCCGC
128 TGAAGAGGCATAATGCGTAAGTCGAGGACCAGCCCGA-TCCCCCTCTGCGCGCTGTTGGCCCCAC
* *
22749595 TGCCACAACCCTCTG-TCTGGCTGGGGCTTAGACATGGAATGAACT-CCCTATGCCTAAGCCAAC
192 TGCCACAACCCTCGGTTC-GGCTGGGGCTTACACATGGAATGAA-TACCCTATGCCTAAGCCAAC
* * * ** * *
22749658 CCACGAAATGGACGTGCGGGTGCTCAGCCAGTCAGAGAGG-TAGAATGCGTAAGCCAGGGATCGG
255 CCACGAAACGGGCGTACGGGTGCTCAGCCAGTTGGAGAGGCT-GAATGCGCAAGCCAGGGATCAG
* * * **
22749722 CCCGGTCCCCCCTGCGTTCTGTCGATCTTGCTGCCGGAACCCTCGGTCTGATCCGATCTTAGACT
319 CCCGGTCCCCCCTACATGCTGTCGATCTTGCTGCCACAACCCTC-G---G-TCCGATC-----C-
** * *
22749787 GGGAATGAACTCCGTATGCTTACACTGGGGATGAACTCCGTATGCTTAGACTGGGGATGAACTCC
373 ---AAT---CTAAG-A--CTT---C---GAATGAACTCCATATGCTTAGACTGGGGATGAACTCC
22749852 GTATGCCTAGACTGGGAAGGAACTCTATATGCTTAGCCATTGAATGAACTCTGTATGCCTAAGCC
423 GTATGCCTAGACTGGGAAGGAACTCTATATGCTTAGCCATTGAATGAACTCTGTATGCCTAAGCC
22749917 AACCCACGAAACGAGCATGCGAGCCGGAGAAGCAGAATGCACGAGCCAGGGATT
488 AACCCACGAAACGAGCATGCGAGCCGGAGAAGCAGAATGCACGAGCCAGGGATT
22749971 GGCCCGGTCCCCTCTGTGTGCTGTCGATCCTGCTGTCACAACCCTCAGTCTGGTCCGATGTTAGA
1 GGCCCGGTCCCCTCTGTGTGCTGTCGATCCTGCTGTCACAACCCTCAGTCTGGTCCGATGTTAGA
22750036 CGAAAATGAACTCCATATGCATAAGTCAACCCATGAAACTAGCGTGCGGGTGCTGAGCCGGCTGA
66 CGAAAATGAACTCCATATGCATAAGTCAACCCATGAAACTAGCGTGCGGGTGCTGAGCCGGCTGA
22750101 AGAGGCATAATGCGTAAGTCGAGGACCAGCCCGATCCCCCTCTGCGCGCTGTTGGCCCCACTGCC
131 AGAGGCATAATGCGTAAGTCGAGGACCAGCCCGATCCCCCTCTGCGCGCTGTTGGCCCCACTGCC
22750166 ACAACCCTCGGTTCGGCTGGGGCTTACACATGGAATGAATACCCTATGCCTAAGCCAACCCACGA
196 ACAACCCTCGGTTCGGCTGGGGCTTACACATGGAATGAATACCCTATGCCTAAGCCAACCCACGA
22750231 AACGGGCGTACGGGTGCTCAGCCAGTTGGAGAGGCTGAATGCGCAAGCCAGGGATCAGCCCGGTC
261 AACGGGCGTACGGGTGCTCAGCCAGTTGGAGAGGCTGAATGCGCAAGCCAGGGATCAGCCCGGTC
22750296 CCCCCTACATGCTGTCGATCTTGCTGCCACAACCCTCGGTCCGATCCAATCTAAGACTTCGAATG
326 CCCCCTACATGCTGTCGATCTTGCTGCCACAACCCTCGGTCCGATCCAATCTAAGACTTCGAATG
22750361 AACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAGACTGGGAAGGAACTCTATATGCT
391 AACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAGACTGGGAAGGAACTCTATATGCT
22750426 TAGCCATTGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCCGGAGAAGC
456 TAGCCATTGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCCGGAGAAGC
22750491 AGAATGCACGAGCCAGGGATT
521 AGAATGCACGAGCCAGGGATT
* *
22750512 GGCCCAGTCCCCTCTGTGTGCTATCGATCCTGCTGTCACAACCCTCAGTCTGGTCCGATGTTAGA
1 GGCCCGGTCCCCTCTGTGTGCTGTCGATCCTGCTGTCACAACCCTCAGTCTGGTCCGATGTTAGA
22750577 CGAAAATGAACTCCATATGCATAAGTCAACCCATGAAACTAGCGTGCGGGTGCTGAGCCGGCTGA
66 CGAAAATGAACTCCATATGCATAAGTCAACCCATGAAACTAGCGTGCGGGTGCTGAGCCGGCTGA
22750642 AGAGGCATAATGCGTAAGTCGAGGACCAGCCCGATCCCCCTCTGCGCGCTGTTGGCCCCACTGCC
131 AGAGGCATAATGCGTAAGTCGAGGACCAGCCCGATCCCCCTCTGCGCGCTGTTGGCCCCACTGCC
22750707 ACAACCCTCGGTTCGGCTGGGGCTTACACATGGAATGAATACCCTATGCCTAAGCCAACCCACGA
196 ACAACCCTCGGTTCGGCTGGGGCTTACACATGGAATGAATACCCTATGCCTAAGCCAACCCACGA
22750772 AACGGGCGTACGGGTGCTCAGCCAGTTGGAGAGGCTGAATGCGCAAGCCAGGGATCAGCCCGGTC
261 AACGGGCGTACGGGTGCTCAGCCAGTTGGAGAGGCTGAATGCGCAAGCCAGGGATCAGCCCGGTC
22750837 CCCCCTACATGCTGTCGATCTTGCTGCCACAACCCTCGGTCCGATCCAATCTAAGACTTCGAATG
326 CCCCCTACATGCTGTCGATCTTGCTGCCACAACCCTCGGTCCGATCCAATCTAAGACTTCGAATG
*
22750902 AACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAGACTGGGAAGGAACTCTGTATGCT
391 AACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAGACTGGGAAGGAACTCTATATGCT
* *
22750967 TAGCCATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCAGTTG
456 TAGCCATTGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGC--G-----A----
* **
22751032 GCCGGGGAAGCAGAATGCGTGAGCCAGGGATT
510 GCCGGAGAAGCAGAATGCACGAGCCAGGGATT
* * * * * *
22751064 GGCCCGGTCCCC-CTATGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATGTTAGA
1 GGCCCGGTCCCCTCTGTGTGCTGTCGATCCTGCTGTCACAACCCTCAGTCTGGTCCGATGTTAGA
** ** ** * * **
22751128 CTGGGAATGAACTCTGTATGCATAAGTCAACCCGCGAAACGAGCGTGCGGGTGTTGAGCCGGCCA
66 C-GAAAATGAACTCCATATGCATAAGTCAACCCATGAAACTAGCGTGCGGGTGCTGAGCCGGCTG
* * * * * ** ** * *
22751193 AAGAGGCATAATGCGCAAGTCGGGGACCAGTCGGGTCCCCCTCTGCATGCTGCCGGTCCCGCTGC
130 AAGAGGCATAATGCGTAAGTCGAGGACCAGCCCGATCCCCCTCTGCGCGCTGTTGGCCCCACTGC
* * * * *
22751258 CACAACCCTCGGTCCGACTGGAGCTTGCACATGGAATGAACT-CCCTATGCCTAATCCAACCCAC
195 CACAACCCTCGGTTCGGCTGGGGCTTACACATGGAATGAA-TACCCTATGCCTAAGCCAACCCAC
* * * ** * * * * * *
22751322 GAAATGGGCATGCGGGTGCTTC-GCTGGTCGGAGAGGCAGAATGCACAACCCGGGGATCGGCCCG
259 GAAACGGGCGTACGGGTGC-TCAGCCAGTTGGAGAGGCTGAATGCGCAAGCCAGGGATCAGCCCG
* * * * * * * **
22751386 GTCCCCCCTGCATGTTGCCGATCCTG-TAGCCGCAACCCTCGATCC-AGTCCAATCTTAGACTGG
323 GTCCCCCCTACATGCTGTCGATCTTGCT-GCCACAACCCTCGGTCCGA-TCCAATCTAAGACTTC
* * *
22751449 GAATGAACTTCGTATGCTTAGACTGGGTATGAACTCCGTATGCCTA
386 GAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTA
22751495 AGTCAACCCA
Statistics
Matches: 1392, Mismatches: 111, Indels: 59
0.89 0.07 0.04
Matches are distributed among these distances:
541 656 0.47
543 1 0.00
544 1 0.00
547 3 0.00
548 1 0.00
549 1 0.00
550 3 0.00
551 48 0.03
552 347 0.25
553 6 0.00
557 1 0.00
562 7 0.01
563 1 0.00
566 2 0.00
567 246 0.18
568 60 0.04
569 8 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (541 bp):
GGCCCGGTCCCCTCTGTGTGCTGTCGATCCTGCTGTCACAACCCTCAGTCTGGTCCGATGTTAGA
CGAAAATGAACTCCATATGCATAAGTCAACCCATGAAACTAGCGTGCGGGTGCTGAGCCGGCTGA
AGAGGCATAATGCGTAAGTCGAGGACCAGCCCGATCCCCCTCTGCGCGCTGTTGGCCCCACTGCC
ACAACCCTCGGTTCGGCTGGGGCTTACACATGGAATGAATACCCTATGCCTAAGCCAACCCACGA
AACGGGCGTACGGGTGCTCAGCCAGTTGGAGAGGCTGAATGCGCAAGCCAGGGATCAGCCCGGTC
CCCCCTACATGCTGTCGATCTTGCTGCCACAACCCTCGGTCCGATCCAATCTAAGACTTCGAATG
AACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAGACTGGGAAGGAACTCTATATGCT
TAGCCATTGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCCGGAGAAGC
AGAATGCACGAGCCAGGGATT
Found at i:22750919 original size:26 final size:26
Alignment explanation
Indices: 22750897--22750991 Score: 111
Period size: 26 Copynumber: 3.7 Consensus size: 26
22750887 CTAAGACTTC
*
22750897 GAATGAACTCCATATGCTTAGACTGG
1 GAATGAACTCCGTATGCTTAGACTGG
* *
22750923 GGATGAACTCCGTATGCCTAGACTGG
1 GAATGAACTCCGTATGCTTAGACTGG
* * *
22750949 GAAGGAACTCTGTATGCTTAGCCAT-G
1 GAATGAACTCCGTATGCTTAGAC-TGG
*
22750975 GAATGAACTCTGTATGC
1 GAATGAACTCCGTATGC
22750992 CTAAGCCAAC
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
26 58 0.98
27 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
GAATGAACTCCGTATGCTTAGACTGG
Found at i:22751475 original size:26 final size:26
Alignment explanation
Indices: 22751439--22751491 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22751429 CCAGTCCAAT
*
22751439 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22751465 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22751491 C
1 C
22751492 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22752188 original size:25 final size:24
Alignment explanation
Indices: 22752152--22752200 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
22752142 GCCCAAAATC
22752152 TTAGACTGGAATGAACTACGTATG
1 TTAGACTGGAATGAACTACGTATG
*
22752176 TTAGACGTGGAATGAACTCCGTATG
1 TTAGAC-TGGAATGAACTACGTATG
22752201 CCTAGCTAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (24 bp):
TTAGACTGGAATGAACTACGTATG
Found at i:22752783 original size:159 final size:158
Alignment explanation
Indices: 22752459--22752897 Score: 471
Period size: 159 Copynumber: 2.8 Consensus size: 158
22752449 ATGCTGTCGG
* * *
22752459 TCCCACTACCACAACCCTCGGTCTGGCTGGGGCTTAGGCAT-GAATGAACTCCCTATGCCTAAGC
1 TCCCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * *
22752523 CAA-CCACGAAACGGCGTGCGGGCACTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGAAT
66 CAACCCATGAAACGGAGTGCGGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCCAGGGAAT
22752587 CAGCTCGGTCCCCTCGGTGTGCTACCAA
131 CAGCTCGGTCCCCTCGGTGTGCTACCAA
* * *
22752615 TCCCACTGCCACAACCCTCGGTCCGGCTGTGGCTTAGACATGGAATGAACTACCTATGACTAAGC
1 TCCCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * *
22752680 CAACCCATGAAACGAGAGTGCGGGC-GTCGAGCC-AGCCGAAGAGGCATAATGTTGCAAGTCAGG
66 CAACCCATGAAACG-GAGTGCGGGCACTC-AACCGA-CCGAAGAGGCAGAATG-CGCAAGCCAGG
* * **
22752743 G-ATC-GC-CGGGTCCCCCTCTGTGTGCTGCCGT
127 GAATCAGCTC-GGT-CCCCTCGGTGTGCTACCAA
* * * * * *
22752774 TCCCGCTGCCATAACCCTCGGTTCGACTGGGGCTGAGACATGGAATGAACTCCCTATGCCTAAGG
1 TCCCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * *
22752839 CAACCCATGAAACGG-GCATGCAGGCACTCAGCCGACTGGATAGGCAGAATGCGCAAGCC
66 CAACCCATGAAACGGAG--TGCGGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCC
22752898 GAGATGAACC
Statistics
Matches: 234, Mismatches: 37, Indels: 22
0.80 0.13 0.08
Matches are distributed among these distances:
156 37 0.16
157 26 0.11
158 24 0.10
159 135 0.58
160 12 0.05
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (158 bp):
TCCCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
CAACCCATGAAACGGAGTGCGGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCCAGGGAAT
CAGCTCGGTCCCCTCGGTGTGCTACCAA
Found at i:22753621 original size:26 final size:26
Alignment explanation
Indices: 22753583--22753635 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22753573 GGCTCAAAAT
22753583 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
22753609 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
22753635 C
1 C
22753636 CTAATCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:22753964 original size:159 final size:157
Alignment explanation
Indices: 22753608--22754028 Score: 486
Period size: 159 Copynumber: 2.7 Consensus size: 157
22753598 AACTCCGCAT
* *
22753608 GCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTG-TTAG
* * * * * *
22753673 CCGGTCGAAGAGGTAGAATGTGCAAGCCGAGGATCGGTCCAGTCCCCCCTACGTGCTGTCGATCC
65 CCGGCCGAAGAGGTAGAATGAGCAAGCCGGGGATCGGCCCAATCCCCCCTACGTGCTATCGATCC
* **
22753738 TGCTACTGCAACCCTCAGTCTGGTCTGA
130 CGCTACCACAACCCTCAGTCTGGTCTGA
* * * * * *
22753766 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCAGGTGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGTT-A
* * * ** *
22753830 GCCGACCGAAGAGGCATAATGAGCAAGCCGGGGATCGGCCCAATCCCCCTCTGTGTGCTATCGGT
64 GCCGGCCGAAGAGGTAGAATGAGCAAGCCGGGGATCGGCCCAATCCCCC-CTACGTGCTATCGAT
* * *
22753895 CCCGCTGCCACAACCCTCGGTCTGG-CTGGG
128 CCCGCTACCACAACCCTCAGTCTGGTCT-GA
* *
22753925 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTG-TTAG
* * * *
22753990 CTGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCC
65 CCGGCCGAAGAGGTAGAATGAGCAAGCCGGGGATCGGCC
22754029 GCGAAACGAG
Statistics
Matches: 216, Mismatches: 41, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
157 2 0.01
158 95 0.44
159 116 0.54
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGTTAGC
CGGCCGAAGAGGTAGAATGAGCAAGCCGGGGATCGGCCCAATCCCCCCTACGTGCTATCGATCCC
GCTACCACAACCCTCAGTCTGGTCTGA
Found at i:22754203 original size:223 final size:223
Alignment explanation
Indices: 22753808--22754251 Score: 622
Period size: 223 Copynumber: 2.0 Consensus size: 223
22753798 GTCAACCCAT
* * * *
22753808 GAAATGAGCGTGCAGGTGTTGAGCCGACCGAAGAGGCATAATGAGCAAGCCGGGGATCGGCCCAA
1 GAAACGAGCGTGCAGGTGCTGAGCCGACCGAAGAGGCATAATGAGCAAGCCGGGGACCAGCCCAA
** * * *
22753873 TCCCCCTCTGTGTGCTATCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGA
66 TCCCCCTCTACGTGCTACCGGTCCCGCTACCACAACCCTCGGTCTGGCTGGGGCTTACACATGGA
* * * *
22753938 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTTAG-CTGGCCGGAGAG
131 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-CGCCGGAGAG
* *
22754002 GTAGAATGCGCAAGCCAGGGATCGGCCGC
195 GCAGAATACGCAAGCCAGGGATCGGCCGC
* * * * *
22754031 GAAACGAGCGTG-AGGGTGCTGAGCCGATCGAAGAGGCATAATGCGCAAGTCGGGGACCAGTCGA
1 GAAACGAGCGTGCA-GGTGCTGAGCCGACCGAAGAGGCATAATGAGCAAGCCGGGGACCAGCCCA
* * *
22754095 GTCCCCCTCTACGTTCTGCCGGTCCCGCTACCACAACCCTCGGTCTGGCTGGGGCTTACACATGG
65 ATCCCCCTCTACGTGCTACCGGTCCCGCTACCACAACCCTCGGTCTGGCTGGGGCTTACACATGG
* *
22754160 AATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCCGTCGGAGAG
130 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCCGCCGGAGAG
*
22754225 GCAGAATACGCAAGCCGGGGATCGGCC
195 GCAGAATACGCAAGCCAGGGATCGGCC
22754252 CGATCCCCCC
Statistics
Matches: 193, Mismatches: 26, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
222 1 0.01
223 191 0.99
224 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.32, T:0.16
Consensus pattern (223 bp):
GAAACGAGCGTGCAGGTGCTGAGCCGACCGAAGAGGCATAATGAGCAAGCCGGGGACCAGCCCAA
TCCCCCTCTACGTGCTACCGGTCCCGCTACCACAACCCTCGGTCTGGCTGGGGCTTACACATGGA
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCCGCCGGAGAGG
CAGAATACGCAAGCCAGGGATCGGCCGC
Found at i:22754336 original size:26 final size:26
Alignment explanation
Indices: 22754307--22754411 Score: 133
Period size: 26 Copynumber: 4.0 Consensus size: 26
22754297 CCGATCCGAT
22754307 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
22754333 CTTACACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
22754359 CCTAGACTGGGAA-GCAACTCTGTATG
1 CTTAGACTGGGAATG-AACTCCGTATG
*
22754385 CTTAGCCAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
22754411 C
1 C
22754412 CTAAGCCAAC
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.01
26 64 0.96
27 2 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22754812 original size:159 final size:158
Alignment explanation
Indices: 22754391--22754886 Score: 423
Period size: 158 Copynumber: 3.1 Consensus size: 158
22754381 TATGCTTAGC
* *
22754391 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCAGTCGGCTG
1 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAGCCGGC-G
* * * * * * *
22754456 GAGAAGCAGAAT--GTACGAGCCGAGGATTGACCCGATCCCCC-CTGCGTGCTGCCGATCCTACT
65 GAGAGGCAGAATGCGTA--AGTCGGGGATCGACCCGATCCCCCTCTGCGTGCTACCGACCCCACT
* * * * *
22754518 GTCGCAACCCTCGGTCCGGTCCGATGTTAGA
128 GCCACAACCCTCGATCCGGTCCGAGGTTACA
* * * * * * * *
22754549 C-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACTAGCGTGCGGGTGCTGAGCCGGCC
1 CAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAGCCGG-C
* * * * * * *
22754613 GAAGAGGCATAATGCGCAAGTCGGGGA-CTAGCCCGATCCCCCTCTGCATGCTACCGGCCCCGCT
64 GGAGAGGCAGAATGCGTAAGTCGGGGATCGA-CCCGATCCCCCTCTGCGTGCTACCGACCCCACT
* * *
22754677 GCCACAACCCTCGATCTGG-CTGGGGCTTACA
128 GCCACAACCCTCGATCCGGTCCGAGG-TTACA
* * *
22754708 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAGGCGCTCAGCCGGTCG
1 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAGCCGG-CG
* * * * * *
22754773 GAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGGT-CCCCTCTGCGTGCTGCCGATCCTACAGT
65 GAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCTCTGCGTGCTACCGACCCCACTGC
* * * ** *
22754837 CGCAACCCTCGGTCCAGTCCGATCTTAGA
130 CACAACCCTCGATCCGGTCCGAGGTTACA
*
22754866 C-TGGGAATGAACTTCGTATGC
1 CAT-GGAATGAACTCCGTATGC
22754887 TTAGACTGGT
Statistics
Matches: 259, Mismatches: 68, Indels: 22
0.74 0.19 0.06
Matches are distributed among these distances:
157 3 0.01
158 135 0.52
159 116 0.45
160 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAGCCGGCGG
AGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCTCTGCGTGCTACCGACCCCACTGCC
ACAACCCTCGATCCGGTCCGAGGTTACA
Done.