Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 223 of 402
Found at i:22754901 original size:26 final size:26
Alignment explanation
Indices: 22754860--22754912 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
22754850 CCAGTCCGAT
22754860 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
22754886 CTTAGACTGGTG-ATGAACTCTGTATG
1 CTTAGACTGG-GAATGAACTCTGTATG
22754912 C
1 C
22754913 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:22755506 original size:26 final size:26
Alignment explanation
Indices: 22755468--22755520 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
22755458 AGCTCAAAAT
22755468 CTTAGACTAGGAATGAAC-TCCATATG
1 CTTAGACTAGGAATGAACAT-CATATG
22755494 CTTAGACGT-GGAATGAACATCATATG
1 CTTAGAC-TAGGAATGAACATCATATG
22755520 C
1 C
22755521 CTAAGCTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACATCATATG
Found at i:22755837 original size:159 final size:158
Alignment explanation
Indices: 22755652--22756082 Score: 375
Period size: 159 Copynumber: 2.7 Consensus size: 158
22755642 CCGGTCCTAT
** * * ** * *
22755652 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGTGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
* * * * * * * * * *
22755716 CTGACCAAAGAGGCATAATGCGCAAGTC-GAGGATCGGCCTGGTCCCCCTCTACGTGCTGTCGGT
65 CCGACCAAAGAGGCAGAATGCGCAAGCCTG-GCATCAGCCCGGTCCCCC-CGACATGCTGCCGAT
** * *
22755780 CCCGTTACCATAACCCTCAGTCTGGCTGGGG
128 CCCACTACCACAACCCTCAGTCCGGCTGGGG
* * * *
22755811 CTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
****
22755876 CGGTTGAAGAGGCAGAATGCGCAAGCCTGGCATCAGCCCGGTCCCCCCGACATGCTGCCGATCCC
66 CGACCAAAGAGGCAGAATGCGCAAGCCTGGCATCAGCCCGGTCCCCCCGACATGCTGCCGATCCC
* * *
22755941 ACTGCCACAACCCTCGGTCCGGCTGTGG
131 ACTACCACAACCCTCAGTCCGGCTGGGG
** * *
22755969 CTTAGACATGGAATGAACTCCCTATG-ACTAAGCCAACCCATAAAACGGGCATGCAGGGCGCTCA
1 CTTAGACATGGAATGAACTCCCTATGCA-TAAGCCAACCCACGAAACGAGCATGC-GGGCACTCA
* ** * * * **
22756033 GTCGGTCAGAGAGGTAGAATGCGCAAG-CTGGGGATTGGCCCGGTCCCCCC
64 GCCGACCAAAGAGGCAGAATGCGCAAGCCT-GGCATCAGCCCGGTCCCCCC
22756083 TGCGTGCTGT
Statistics
Matches: 222, Mismatches: 45, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
158 87 0.39
159 133 0.60
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
CGACCAAAGAGGCAGAATGCGCAAGCCTGGCATCAGCCCGGTCCCCCCGACATGCTGCCGATCCC
ACTACCACAACCCTCAGTCCGGCTGGGG
Found at i:22756000 original size:158 final size:159
Alignment explanation
Indices: 22755791--22756082 Score: 428
Period size: 158 Copynumber: 1.8 Consensus size: 159
22755781 CCGTTACCAT
* * * *
22755791 AACCCTCAGTCTGGCTGGGGCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 AACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATAAAA
*
22755856 CGGGCATGC-GGGCACTCAGCCGGT-TGAAGAGGCAGAATGCGCAAGCCT-GGCATCAGCCCGGT
66 CGGGCATGCAGGGCACTCAGCCGGTCAG-AGAGGCAGAATGCGCAAG-CTGGGCATCAGCCCGGT
22755918 CCCCCCGACATGCTGCCGATCCCACTGCCAC
129 CCCCCCGACATGCTGCCGATCCCACTGCCAC
* *
22755949 AACCCTCGGTCCGGCTGTGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATAAAA
1 AACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATAAAA
* * * * **
22756014 CGGGCATGCAGGGCGCTCAGTCGGTCAGAGAGGTAGAATGCGCAAGCTGGGGATTGGCCCGGTCC
66 CGGGCATGCAGGGCACTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCTGGGCATCAGCCCGGTCC
22756079 CCCC
131 CCCC
22756083 TGCGTGCTGT
Statistics
Matches: 118, Mismatches: 13, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
158 70 0.59
159 47 0.40
160 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.16
Consensus pattern (159 bp):
AACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATAAAA
CGGGCATGCAGGGCACTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCTGGGCATCAGCCCGGTCC
CCCCGACATGCTGCCGATCCCACTGCCAC
Found at i:22756132 original size:159 final size:157
Alignment explanation
Indices: 22755810--22756153 Score: 401
Period size: 159 Copynumber: 2.2 Consensus size: 157
22755800 TCTGGCTGGG
* * *
22755810 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATAAAACGGGCATGCGGGCACTCAG
*
22755875 CCGGTTGAAGAGGCAGAATGCGCAAGCCTGGCATCAGCCCGGTCCCCCCGACATGCTGCCGATCC
66 CCGGTAGAAGAGGCAGAATGCGCAAGCCTGGCATCAGCCCGGTCCCCCCGACATGCTGCCGATCC
*
22755940 CACTGCCACAACCCTCGGTCCGGCTGT
131 CACTGCCACAACCCTCGGTCCGGCCGT
*
22755967 GGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATAAAACGGGCATGCAGGGCGCTC
1 -GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATAAAACGGGCATGC-GGGCACTC
* * * ** * *
22756032 AGTCGGTCAG-AGAGGTAGAATGCGCAAG-CTGGGGATTGGCCCGGTCCCCCCTG-CGTGCTGTC
64 AGCCGGT-AGAAGAGGCAGAATGCGCAAGCCT-GGCATCAGCCCGGTCCCCCC-GACATGCTGCC
* * * ** *
22756094 GATCCTATTGTCGTAACCCTCGGTCCAGTCCGAT
126 GATCCCACTGCCACAACCCTCGGTCC-GGCCG-T
*
22756128 -CTTAGAC-TGGTAATGAACTCCGTATG
1 GCTTAGACATGG-AATGAACTCCCTATG
22756154 CTTAGATTGG
Statistics
Matches: 159, Mismatches: 20, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
158 57 0.36
159 96 0.60
160 5 0.03
161 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATAAAACGGGCATGCGGGCACTCAG
CCGGTAGAAGAGGCAGAATGCGCAAGCCTGGCATCAGCCCGGTCCCCCCGACATGCTGCCGATCC
CACTGCCACAACCCTCGGTCCGGCCGT
Found at i:22756549 original size:26 final size:26
Alignment explanation
Indices: 22756520--22756572 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22756510 CTGGTTCGAT
*
22756520 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
22756546 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
22756572 C
1 C
22756573 CTACGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:22756951 original size:159 final size:157
Alignment explanation
Indices: 22756548--22757046 Score: 438
Period size: 159 Copynumber: 3.2 Consensus size: 157
22756538 TCTGTATGCT
* ** *
22756548 TAGACATGGAATGAACTCCGTATGCCTACGCCAACCCACGAAAT-GAGTGTGCGGGTGCTCAGCC
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGAGCATGCGGGTGCT-GGCC
** * * ***
22756612 GATCAAAGAGGCAGAATACGCAAGCCAGGGATCGGCCCAATCCCCCTACGTGCTGTCGATCCTAC
65 GATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTACGTGCTGTCGATCCTAC
* * * *
22756677 TGCCATAACCCTCGGTCCGATCTGATCT
130 TGCCACAACCCTCGGTCCGAGCTGAGCC
* *
22756705 TAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAT-GAGCATGCGGGTGCTGAGC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGAGCATGCGGGTGCTG-GC
* * * * * * ** *
22756768 CAACCGGAAAGGCACAATGTGCAAGCTGGGGATCGGCCTGGTCCCCTTCTGTGTGCTGTCGGTCA
64 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCC--CTACGTGCTGTCGATC-
* * *
22756833 C-GCTGCCACAACCCTCGGTCTG-GCTGGGGCC
126 CTACTGCCACAACCCTCGGTCCGAGCT-GAGCC
* **
22756864 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAG-GCATGCGGGCACCTGGCC
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGAGCATGCGGG-TGCTGGCC
* * * *
22756928 GATCGGAGAGGTAGAATGCGCAAGCCGAGGATTGGCCTGGTCCCTCCTGCGTGCTG-CTGATCCT
65 GATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCC-CCTACGTGCTGTC-GATCCT
* * * * * * * *
22756992 ACTGTCGCAATCCTCGGTTCGATCCGATCT
128 ACTGCCACAACCCTCGGTCCGAGCTGAGCC
*
22757022 TAGAC-TGGGAATGAATTCCGTATGC
1 TAGACAT-GGAATGAACTCCGTATGC
22757047 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 58, Indels: 27
0.76 0.16 0.08
Matches are distributed among these distances:
156 1 0.00
157 90 0.33
158 52 0.19
159 120 0.44
160 7 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGAGCATGCGGGTGCTGGCCG
ATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTACGTGCTGTCGATCCTACT
GCCACAACCCTCGGTCCGAGCTGAGCC
Found at i:22766184 original size:159 final size:156
Alignment explanation
Indices: 22765876--22766218 Score: 368
Period size: 159 Copynumber: 2.2 Consensus size: 156
22765866 CCCAATCTAA
* * * ** * *
22765876 GCATATGGAGTTCATTCCTAGTCTAAGATC-AGATTGGACCAAGGGTTGTGGCAGCAGGATCGGC
1 GCATAAGGAGTTAATTCCCAGTCTAAGCCCTAG-TTGGACCAAGGGTTATGGCAGCAGGATCGAC
* * * * * *
22765940 AGCACGCAGGGGGACCGGGCTAATCCCCAGCTTGCACATTCTGCCTTTCCTGCCGGTTGAGCGCC
65 AGCACACAAGGGGACCGGGCTAATCCCCAGCTTGCACATTATGCC-TTCCTGCCCGCTCAGCGCC
* *
22766005 CGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCATGGGTTGACTTAG
* * *
22766033 GCATAAGGAGTTAATT-CCATGTCTAAGCCCTAGTTGGACCGAGGGTTATGGCTGCGGGATCGAC
1 GCATAAGGAGTTAATTCCCA-GTCTAAGCCCTAGTTGGACCAAGGGTTATGGCAGCAGGATCGAC
* * * *
22766097 AGCACACAAAAGGGGACTGGGCTGATCCCCAGCTTGCGCATTATGCC-TCCTTGGCCCGCTCAGT
65 AGCACAC--AAGGGGACCGGGCTAATCCCCAGCTTGCACATTATGCCTTCC-T-GCCCGCTCAGC
* *
22766161 GCCTGCACGCTCGTTTCATGGGTTGACTTTG
126 GCCCGCACGCTCGTTTCATGGGTTGACTTAG
* *
22766192 GCATACGGAGTTCATTCCCAGTCTAAG
1 GCATAAGGAGTTAATTCCCAGTCTAAG
22766219 ATTGGATCAA
Statistics
Matches: 153, Mismatches: 26, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
156 2 0.01
157 57 0.37
158 3 0.02
159 88 0.58
160 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (156 bp):
GCATAAGGAGTTAATTCCCAGTCTAAGCCCTAGTTGGACCAAGGGTTATGGCAGCAGGATCGACA
GCACACAAGGGGACCGGGCTAATCCCCAGCTTGCACATTATGCCTTCCTGCCCGCTCAGCGCCCG
CACGCTCGTTTCATGGGTTGACTTAG
Found at i:22766384 original size:26 final size:26
Alignment explanation
Indices: 22766344--22766401 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 26
22766334 CATCAGTTGG
22766344 CTAAGGCATACGGAGTTCATTCC-ATGT
1 CTAA-GCATACGGAGTTCATTCCTA-GT
22766371 CTAAGCATACGGAGTTCATTCCTAGT
1 CTAAGCATACGGAGTTCATTCCTAGT
22766397 CTAAG
1 CTAAG
22766402 ATCAGACTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCTAGT
Found at i:22768095 original size:158 final size:156
Alignment explanation
Indices: 22767788--22768458 Score: 465
Period size: 158 Copynumber: 4.2 Consensus size: 156
22767778 CCCAGTCTAA
* * * * * * * * *
22767788 GCATACAGAGTTCATTCCCAGTCTAAAATCAGATCGGACCGAGGGTTAC-GACAGCAGGATTGGC
1 GCATACGGAGTTCATTCCAAGTCTAAGACCAGA-CGAACCGAGGGTTGCAG-CAGTAGGATCGAC
* ** * * * *
22767852 AGCACGCAGGGGGGATCGGGCTGATCCCCGGCTTGTGCATTTTGCCTCTCCGACCGGCTGAGCGC
64 AACACGCAGGGGCAACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGACC-GCTGAGCGC
* *
22767917 CCGCACGC-CTGCTTCGTGGGTTGGCTTAG
128 CTGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * * ** * * **
22767946 GCATAGGGAGTTCATTCCAAGTC-AAGCCCCAGTA-GGACCGAGGGTTGTGGTAGTGGGATCGGT
1 GCATACGGAGTTCATTCCAAGTCTAAG-ACCAG-ACGAACCGAGGGTTGCAGCAGTAGGATCGAC
* * * * *
22768009 AGCACGTAGAGGGCAACCGGG-TAGATCCCCGTCTTGCGCATTATGCCCCTTCGACCTGCTGAGC
64 AACACGCAG-GGGCAACCGGGCT-GATCCCCGACTTGCGCATTATGCCTCTCCGACC-GCTGAGC
* * * *
22768073 GCCTGCATGCTCGTTTCATGGGTTGACTTAT
126 GCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
22768104 GCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGAACCGAGGGTTGCAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGACCAGA-CGAACCGAGGGTTGCAGCAGTAGGATCGACA
** * * *
22768169 ACACGCAGGGGGGACTGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCC
65 ACACGCAGGGGCAACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGACCG-CTGAGCGCC
22768234 TGCACGCTCGTTTCGTGGGTTGGCTTAG
129 TGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * * *
22768262 GCATACGGAGTTCATTCCATGTATAAGTCATAGTCGGATCGAGTGTTGTGGTAGCAGGACCGGTA
1 GCATACGGAGTTCATTCCAAGTCTAAGAC-CAGACGAACCGAG-G--GT--T-GCA-G--CAGTA
* * * * * *
22768327 GCAGTATCGACAGCATGCAGAGGG-GATCGGGCTGATCCTCGACTTGCGTATTATGCCTCTCC-A
56 G--G-ATCGACAACACGCAG-GGGCAACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGA
* * * *
22768390 GCCGGCTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
117 -CC-GCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
22768432 GCATATGGAGTTCATCCCCAGTCTAAG
1 GCATACGGAGTTCATTCCAAGTCTAAG
22768459 CATATAGAGT
Statistics
Matches: 403, Mismatches: 83, Indels: 42
0.76 0.16 0.08
Matches are distributed among these distances:
157 33 0.08
158 213 0.53
159 37 0.09
161 2 0.00
163 1 0.00
164 3 0.01
165 1 0.00
167 5 0.01
169 2 0.00
170 102 0.25
171 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAAGTCTAAGACCAGACGAACCGAGGGTTGCAGCAGTAGGATCGACAA
CACGCAGGGGCAACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGACCGCTGAGCGCCTG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:22768482 original size:26 final size:26
Alignment explanation
Indices: 22768432--22768484 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22768422 GTTGACTTAG
* *
22768432 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAATCTAA
* *
22768458 GCATATAGAGTTCATTCTCAATCTAA
1 GCATATAGAGTTCATCCCCAATCTAA
22768484 G
1 G
22768485 ATCAAACCGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAATCTAA
Found at i:22768970 original size:26 final size:26
Alignment explanation
Indices: 22768933--22768985 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
22768923 GTTGGCTTAG
22768933 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
22768959 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATTCCTAGTCTAA
22768985 G
1 G
22768986 ATTTTGAGCG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:22769920 original size:158 final size:157
Alignment explanation
Indices: 22769678--22770266 Score: 427
Period size: 158 Copynumber: 3.7 Consensus size: 157
22769668 ATCCCCAGTC
* *
22769678 TAAGCATATGGAATTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGCAGGATCG
1 TAAGCATAAGGAGTTCATT-CCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGCAGGATCG
** * * * * *
22769743 GTAGCACGCAGGGGTGACCGGACCGATCCTC-GACTTACGCATTCTGCGTCTTCGA-TCGGCTGA
65 ACAGCACGCAGGGGGGACCGGACCGATCCCCAG-CTTACACATTCTGCCTCTCCGACT-GGCTGA
* *
22769806 GCACCCGCATGCTCGTTTCGTGGGTCGGTT
128 GCACCCGCATGCCCGTTTCGTGGGTCGGCT
* * *
22769836 TAAGCATACA-GAGTTCATTCCTAGTCTAAGATC-GAACCAGA-CTGAGGGTTGCGGTAGTAGGA
1 TAAGCATA-AGGAGTTCATTCC-AGTCTAAGATCAG-ACCAGATC-GAGGGTTACGGCAGCAGGA
* *
22769898 TCGACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGACTGGCTG
62 TCGACAGCACGCAGGGGGGACCGGACCGATCCCCAGCTTACACATTCTGCCTCTCCGACTGGCTG
* *
22769963 AGCGCCCGCATGCCCGTTTCGTGGGTTGGCT
127 AGCACCCGCATGCCCGTTTCGTGGGTCGGCT
* ** * * ** * *
22769994 TAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGCAGCGGGACC
1 TAAGCATAAGGAGTTCATTCCA-GTCTAAG-ATCAGACCAGATCGAGGGTTACGGCAGCAGGATC
* * ** * * * * * * * * * ** *
22770058 GACAGCATGTAGAGAAGGATCGGGCCGATCCCCGGCTTTCGCGTTATGCCTCTCTGGCCAGCTCA
64 GACAGCACGCAG-GGGGGACCGGACCGATCCCCAGCTTACACATTCTGCCTCTCCGACTGGCTGA
** * * * * * *
22770123 GTGCCCGAACGCTCATTTCGTGGGTTGACT
128 GCACCCGCATGCCCGTTTCGTGGGTCGGCT
* * * * * * * * *
22770153 TAGGTATACGGAGTTCATTCCCAGTCTCAGATCAGACCGGATCGAGGGTTGCGGCTGTAGGATCA
1 TAAGCATAAGGAGTTCATT-CCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGCAGGATCG
* * * * * *
22770218 ATAGCACACAGGGGGGACCGGGA-CGGTCCTCGGCTTACGCATTCTGCCT
65 ACAGCACGCAGGGGGGACC-GGACCGATCCCCAGCTTACACATTCTGCCT
22770267 TTTCGATCGG
Statistics
Matches: 342, Mismatches: 74, Indels: 30
0.77 0.17 0.07
Matches are distributed among these distances:
157 6 0.02
158 211 0.62
159 121 0.35
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
TAAGCATAAGGAGTTCATTCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGCAGGATCGA
CAGCACGCAGGGGGGACCGGACCGATCCCCAGCTTACACATTCTGCCTCTCCGACTGGCTGAGCA
CCCGCATGCCCGTTTCGTGGGTCGGCT
Found at i:22770917 original size:26 final size:26
Alignment explanation
Indices: 22770867--22770919 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22770857 GTTGGCTTAG
* *
22770867 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
22770893 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
22770919 G
1 G
22770920 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:22771981 original size:159 final size:158
Alignment explanation
Indices: 22771614--22772062 Score: 431
Period size: 159 Copynumber: 2.8 Consensus size: 158
22771604 CCCAGTATAA
* * * *
22771614 GCATACGAAGTTCATTCCCAGTCTAAGATCGGAT-CAGATCAAGGGTTGCGACAGCAGGATCGAC
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGG-TCCAGACCAAGGGTTGTGGCAGCAGGACCGAC
* ** * *
22771678 AGTACGTACGGGGCACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCTGCTGAACGC
65 AGCACACACGGGGCACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTCAACGC
* *
22771743 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCATTTCGTGGGTTGACTTAG
* * ** * ** * * *
22771772 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGCCGGACCGG
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCGGTCCAGACCAAGGGTTGTGGCAGCAGGACCGA
* * * * ** * * *
22771835 TAGCACACAGTGGGGGACCGGGCTGATCCCTGGCTTGCGCGTTAC-GCCTCTCCGGCCGGCTCAA
64 CAGCACACA-CGGGGCACCGGGCCGATCCCCAGCTTGCGCATT-CTACCTCTCCGACCGGCTCAA
* * *
22771899 TGCCCGCATGCTCATTTCGTTGGTTGACTTAG
127 CGCCCGCACGCTCATTTCGTGGGTTGACTTAG
*
22771931 GCATACGAAGTTCATTCCCAGTCTAAGATCGGTCCAGACCAAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGTCCAGACCAAGGGTTGTGGCAGCAGGACCGACA
** * * * * * *
22771996 GCATGCAGGGGGGACCAGGCCGGTGCCC-GACTTGCGCATTCTACCTCTCCGACCGGCTGAACGC
66 GCACACACGGGGCACCGGGCCGATCCCCAG-CTTGCGCATTCTACCTCTCCGACCGGCTCAACGC
22772060 CCG
130 CCG
22772063 TTTCGTTGGT
Statistics
Matches: 224, Mismatches: 58, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
157 5 0.02
158 93 0.42
159 122 0.54
160 4 0.02
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGTCCAGACCAAGGGTTGTGGCAGCAGGACCGACA
GCACACACGGGGCACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTCAACGCC
CGCACGCTCATTTCGTGGGTTGACTTAG
Found at i:22772120 original size:26 final size:26
Alignment explanation
Indices: 22772081--22772132 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22772071 GTTGGCTTAG
22772081 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
22772107 GCATACGGATTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
22772133 TAGTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:22773332 original size:26 final size:26
Alignment explanation
Indices: 22773303--22773355 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22773293 GTTGGCTTAG
22773303 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
* *
22773329 GCATATGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22773355 G
1 G
22773356 ATCTGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22774002 original size:158 final size:157
Alignment explanation
Indices: 22773748--22774209 Score: 458
Period size: 158 Copynumber: 2.9 Consensus size: 157
22773738 GGACCGGATG
* * * * * * *
22773748 GAGGGTTACGACAGCAGGATCGGCAGCACGCAGGGGGGACTGGGCCGATCCCTGGCTTGCGCATT
1 GAGGGTTGCGACAGTAGCATCGACAGCACGCAGGGGGGACTGGGCTGATCCCCGGCTTGTGCATT
* * * * *
22773813 CTACCTCTCCGACCGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTT
66 CTGCCTCTCCGA-CGGCTGAG-AGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
*
22773878 CATTCCATGTCTAAGCCCCAG-CCAGAAC-
129 CATTCCATGTCTAAGCACCAGACCA-AACT
* * *
22773906 GAGGGTTGTGGCAGTGAG-A-CTGACAGCACGCAGAGGGGGA-TCGGGCTGATCCCCGGCTTATG
1 GAGGGTTGCGACAGT-AGCATC-GACAGCACGCAG-GGGGGACT-GGGCTGATCCCCGGCTTGTG
* * * * ** * *
22773968 CATTATGCCTCTCCGATCGGCTCAGTGCCGCACGCTCATTTTTTGGGTTGACTTAGTCATACGGA
62 CATTCTGCCTCTCCGA-CGGCTGAGAGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
* *
22774033 GTTCATTCCCA-GTCTAAG-ATCAGACCAATCT
126 GTTCATT-CCATGTCTAAGCACCAGACCAAACT
* *
22774064 GAGTGTTGCGACAGTAGCATCGACAGCACGCAGGGGGGACTGGG-TCGA-CCCCAGCTTGTGCAT
1 GAGGGTTGCGACAGTAGCATCGACAGCACGCAGGGGGGACTGGGCT-GATCCCCGGCTTGTGCAT
* * *
22774127 TCTGCCTCTCTGACGGGCTGAGCGCC-CACATGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAG
65 TCTGCCTCTCCGAC-GGCTGAGAGCCGCAC--GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
22774191 TTCATTCCATGTCTAAGCA
127 TTCATTCCATGTCTAAGCA
22774210 TATGGAGTTC
Statistics
Matches: 247, Mismatches: 41, Indels: 32
0.77 0.13 0.10
Matches are distributed among these distances:
155 4 0.02
156 37 0.15
157 59 0.24
158 99 0.40
159 48 0.19
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GAGGGTTGCGACAGTAGCATCGACAGCACGCAGGGGGGACTGGGCTGATCCCCGGCTTGTGCATT
CTGCCTCTCCGACGGCTGAGAGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
TTCCATGTCTAAGCACCAGACCAAACT
Found at i:22774217 original size:26 final size:26
Alignment explanation
Indices: 22774181--22774233 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22774171 GTTGGCTTAG
22774181 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
22774207 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
22774233 G
1 G
22774234 ATTAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:22774565 original size:26 final size:26
Alignment explanation
Indices: 22774532--22774587 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
22774522 TGGGTTGACT
22774532 TAAGCATACAGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
* *
22774558 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
22774584 TAAG
1 TAAG
22774588 ATCAGACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:22775022 original size:158 final size:158
Alignment explanation
Indices: 22774561--22775062 Score: 575
Period size: 158 Copynumber: 3.2 Consensus size: 158
22774551 CCCAGTCTAA
*
22774561 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTTGCGGCAGCAGGATC-AG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGTGGCAGCAGGATCGA-
* * * * *
22774624 CAGCACGCAGGGGGGATCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTAAGCA
64 CAGCACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCG
* * *
22774689 CCCGCACACCCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
22774719 GCATAGGGAGTTCATT-CCATGTCCAAGCCA-CAG-CCAGACCGAGGGTTGTGGCAGCAGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG--ATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCG
* * * * * * *
22774781 GCAGCACGCAAAGGGGGACCGGGCCGATCCCTGGCTTGTGCATTATGCCTCTTCGGCCGGCTCAG
63 ACAGCACGC-AAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAG
* *
22774846 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
22774878 GCATACGGATTTCATTCCCAATCTAAGATCGGATCGGACTGAGGGTTGTGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * *
22774943 GCACACATGGGGGATCGGGTCGATCCCCGGTTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCC
66 GCACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCGCC
*
22775008 CGCATGCTCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
22775036 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
22775063 CATACGGAGT
Statistics
Matches: 283, Mismatches: 51, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
157 7 0.02
158 148 0.52
159 124 0.44
160 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:22775065 original size:26 final size:26
Alignment explanation
Indices: 22775036--22775088 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22775026 GTTGGCTTAG
22775036 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22775062 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22775088 G
1 G
22775089 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22775788 original size:26 final size:26
Alignment explanation
Indices: 22775757--22775809 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22775747 GTTGACTTAG
*
22775757 GCATACGGAGTTCATGCCCAGTCTAA
1 GCATACGGAGTTCATGCACAGTCTAA
*
22775783 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATGCACAGTCTAA
22775809 G
1 G
22775810 ATAGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATGCACAGTCTAA
Found at i:22776663 original size:26 final size:24
Alignment explanation
Indices: 22776633--22776686 Score: 72
Period size: 26 Copynumber: 2.2 Consensus size: 24
22776623 TTAGGTAAAT
22776633 GGAGTTCATCCCCAGTCTAAGCATAC
1 GGAGTTCATCCCCAGTCTAAG-AT-C
* *
22776659 GGAGTTCATTCCTAGTCTAAGATC
1 GGAGTTCATCCCCAGTCTAAGATC
22776683 GGAG
1 GGAG
22776687 AGGATAGAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 5 0.19
25 2 0.08
26 19 0.73
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (24 bp):
GGAGTTCATCCCCAGTCTAAGATC
Found at i:22777164 original size:26 final size:26
Alignment explanation
Indices: 22777128--22777206 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
22777118 GTTGGCTTAG
*
22777128 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
22777154 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
22777180 GCATACGGATTTCATTTCCA-GTCTAA
1 GCATACGGAGTTCA-TTCCATGTCTAA
22777206 G
1 G
22777207 ATTTTGAGCC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 45 0.90
27 5 0.10
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:22777807 original size:26 final size:26
Alignment explanation
Indices: 22777770--22777822 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22777760 GTTGACTTAG
*
22777770 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
22777796 GCATACGAAGTTCATTCCCGGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
22777822 G
1 G
22777823 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:22778112 original size:159 final size:159
Alignment explanation
Indices: 22777895--22778299 Score: 408
Period size: 159 Copynumber: 2.6 Consensus size: 159
22777885 CCCCGGCTTA
* * * * * * * *
22777895 CGCATTCTGCCTCCCCGGTCGGCTGAATACCCACACGCCCGTTTCATGTGTTGGCTTAGGCATAA
1 CGCATTCTGCCTCTCCGATCGGCTGAACACCCGCACGCTCATTTCATGGGTTGACTTAGGCATAA
* * * *
22777960 GGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGCAGGACCGACAGCACG
66 GGAGTTCATTCCATGTCTAAGCACCAGACCGGACCAAGGGTTGAGGCAACAGGACCGACAACACG
** *
22778024 TAGAGGGGGACCCGGTCGATCCCTGACTTG
131 TAG-GGGGGACCCGGTCGATCCCCAACTAG
* * *
22778054 CGCATTATGCCTCTCCGATCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC
1 CGCATTCTGCCTCTCCGATCGGCTGAACACCCGCACGCTCATTTCATGGGTTGACTTAGGCATA-
* *** ** *
22778119 A-GAGTTCAGTTCTA-GTCTAAG-ATTGGACCGGACTGAGGGTTGAGGCAACAGGATCGACAACA
65 AGGAGTTCA-TTCCATGTCTAAGCACCAGACCGGACCAAGGGTTGAGGCAACAGGACCGACAACA
***
22778181 CGTAGGGGGGATTGGGTCGATCCCCAACTAG
129 CGTAGGGGGGACCCGGTCGATCCCCAACTAG
* * * * *
22778212 CGCATTCTACATCTCCGA-CTGGCTGAACGCCCGCACGCTCATTTCGTGGG-TCAGCTTAGGCAT
1 CGCATTCTGCCTCTCCGATC-GGCTGAACACCCGCACGCTCATTTCATGGGTTGA-CTTAGGCAT
* *
22778275 ACGGAGTTCATTTCATGTCTAAGCA
64 AAGGAGTTCATTCCATGTCTAAGCA
22778300 TACGGAGTTC
Statistics
Matches: 199, Mismatches: 39, Indels: 16
0.78 0.15 0.06
Matches are distributed among these distances:
157 6 0.03
158 86 0.43
159 102 0.51
160 5 0.03
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.23
Consensus pattern (159 bp):
CGCATTCTGCCTCTCCGATCGGCTGAACACCCGCACGCTCATTTCATGGGTTGACTTAGGCATAA
GGAGTTCATTCCATGTCTAAGCACCAGACCGGACCAAGGGTTGAGGCAACAGGACCGACAACACG
TAGGGGGGACCCGGTCGATCCCCAACTAG
Found at i:22778270 original size:158 final size:159
Alignment explanation
Indices: 22777995--22778297 Score: 371
Period size: 158 Copynumber: 1.9 Consensus size: 159
22777985 AGCCGGACCA
* * * ** *
22777995 AGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGACCCGGTCGATCCCTGACTTGCGCATT
1 AGGGTTGAGGCAACAGGACCGACAACACGTAGAGGGGGACCCGGTCGATCCCCAACTAGCGCATT
* * * *
22778060 ATGCCTCTCCGATCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTT
66 ATACATCTCCGATCGGCTCAACACCCGCACGCTCATTTCATGGGTAGACTTAGGCATACAGAGTT
22778125 CAGTTC-TAGTCTAAGATTGGACCGGACTG
131 CAGTTCAT-GTCTAAGATTGGACCGGACTG
* ***
22778154 AGGGTTGAGGCAACAGGATCGACAACACGTAG-GGGGGATTGGGTCGATCCCCAACTAGCGCATT
1 AGGGTTGAGGCAACAGGACCGACAACACGTAGAGGGGGACCCGGTCGATCCCCAACTAGCGCATT
* * * * *
22778218 CTACATCTCCGA-CTGGCTGAACGCCCGCACGCTCATTTCGTGGGTCAG-CTTAGGCATACGGAG
66 ATACATCTCCGATC-GGCTCAACACCCGCACGCTCATTTCATGGGT-AGACTTAGGCATACAGAG
*
22778281 TTCATTTCATGTCTAAG
129 TTCAGTTCATGTCTAAG
22778298 CATACGGAGT
Statistics
Matches: 121, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
157 1 0.01
158 90 0.74
159 30 0.25
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (159 bp):
AGGGTTGAGGCAACAGGACCGACAACACGTAGAGGGGGACCCGGTCGATCCCCAACTAGCGCATT
ATACATCTCCGATCGGCTCAACACCCGCACGCTCATTTCATGGGTAGACTTAGGCATACAGAGTT
CAGTTCATGTCTAAGATTGGACCGGACTG
Found at i:22778320 original size:26 final size:26
Alignment explanation
Indices: 22778271--22778323 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22778261 GTCAGCTTAG
*
22778271 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
22778297 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
22778323 G
1 G
22778324 ATAGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:22778904 original size:26 final size:26
Alignment explanation
Indices: 22778847--22778904 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 26
22778837 CGGAGTTCAT
22778847 TCTAAGCATACAGAGTTCATTCCATG
1 TCTAAGCATACAGAGTTCATTCCATG
* *
22778873 TTTAAGCGTACAGA-TTGCATTCTCA-G
1 TCTAAGCATACAGAGTT-CATTC-CATG
22778899 TCTAAG
1 TCTAAG
22778905 ATTTTGAGCC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 2 0.07
26 23 0.85
27 2 0.07
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (26 bp):
TCTAAGCATACAGAGTTCATTCCATG
Found at i:22779787 original size:26 final size:26
Alignment explanation
Indices: 22779757--22779807 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
22779747 CGGCTTCAGA
22779757 ATATGGAGTTCATTCC-ATGTCTAAGC
1 ATATGGAGTTCATTCCTA-GTCTAAGC
22779783 ATATGGAGTTCATTCCTAGTCTAAG
1 ATATGGAGTTCATTCCTAGTCTAAG
22779808 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATGGAGTTCATTCCTAGTCTAAGC
Found at i:22780152 original size:26 final size:26
Alignment explanation
Indices: 22780122--22780174 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22780112 GTTAACTTAG
22780122 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22780148 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22780174 G
1 G
22780175 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22780427 original size:355 final size:357
Alignment explanation
Indices: 22779915--22780740 Score: 982
Period size: 368 Copynumber: 2.3 Consensus size: 357
22779905 TCCGATCGAT
* * *
22779915 TGAGCACCCGCACGCTCGTTTCAAGGGTTGGCTTAGGCATACGAAGTTCATTCAATGTCTAAGCC
1 TGAGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACG-AGTTCATTCCATGTCTAAGCC
* *
22779980 CCAGCCAGACCCAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGACAGCACACAGAGGGGAACC
65 CCAGCCAGACCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGACAGCACACAAAGGGGAACC
* * * * *
22780045 GGGCTGATCCTCAGCTTGCGTATTATGCC-TTT-CCGA-TCGACTGAGCGCTCACACGCTCGTTT
130 GGGCTAATCCCCAGCTTGCGCATTATGCCTTTTGCCGACTCGACTGAGCGCCCACACGCTCATTT
* * *
22780107 CATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
195 CATGGGTTAACTTAGGCATACAGAGTTCATCCCCAGTCCAAGCAGACGGAGTTCATTCCCAGTCT
* * * * *
22780172 AAGATCAGATCGGATCGAAAGTTGCGAC-AGCAGGATCGACAGTACGCAGGAGGGATCGGGCCGA
260 AAGATCAGACCGGACCGAAAGTTGCGACTA-CAAGATCGACAGCACGCAGGAGGGACCGGGCCGA
* *
22780236 TCCCCAGCTTGTGCATTCTGCCTCTCCG-GTCAGC
324 TCCCCAGCTTGCGCATTCTGCCTCTCCGACT-AGC
* *
22780270 TGAGCACCCGCACACTCGTTTCATGGGTTCGATTAGGCATACAGAGTTCATTCCATGTCTAAGCC
1 TGAGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGCC
* * * **
22780335 CCAGCCAGATCGAGGGTTGTGGTAGCAGGACTGGCAGCGGGATCGACAGCACGCAAAAGGGG-GT
65 CCAGCCAGACCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGACAGCACAC-AAAGGGGAAC
* * *
22780399 CGGGCTAATCCCC-GACTTGTGCATTATGCCTTTTCGGCCGACCTCTCCGGTCGGCTGAGTGCCC
129 CGGGCTAATCCCCAG-CTTGCGCATTATGCCTTTT--GCCGA------C--TCGACTGAGCGCCC
* * ** *
22780463 GCTCGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCCAAGCAGACGGAGTT
183 ACACGCTCATTTCATGGGTTAACTTAGGCATACAGAGTTCATCCCCAGTCCAAGCAGACGGAGTT
* ** * ** *
22780528 CATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCTACAAGATCGGTAGCACGCTGGAGG
248 CATTCCCAGTCTAAGATCAGACCGGACCGAAAGTTGCGACTACAAGATCGACAGCACGCAGGAGG
* * *
22780593 GACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACTGGC
313 GACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACTAGC
* * *
22780638 TGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
1 TGAGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATA-CGAGTTCATTCCATGTCTAAGCC
* * * *
22780703 CCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGC
65 CCAGCCAGACCGAGGGTTGTGGTAGCAGGACCGGCAGC
22780741 ATGCAGAGGG
Statistics
Matches: 396, Mismatches: 56, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
354 1 0.00
355 132 0.33
356 10 0.03
359 4 0.01
368 247 0.62
369 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (357 bp):
TGAGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGCCC
CAGCCAGACCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGACAGCACACAAAGGGGAACCG
GGCTAATCCCCAGCTTGCGCATTATGCCTTTTGCCGACTCGACTGAGCGCCCACACGCTCATTTC
ATGGGTTAACTTAGGCATACAGAGTTCATCCCCAGTCCAAGCAGACGGAGTTCATTCCCAGTCTA
AGATCAGACCGGACCGAAAGTTGCGACTACAAGATCGACAGCACGCAGGAGGGACCGGGCCGATC
CCCAGCTTGCGCATTCTGCCTCTCCGACTAGC
Found at i:22781002 original size:159 final size:158
Alignment explanation
Indices: 22780520--22781017 Score: 551
Period size: 158 Copynumber: 3.1 Consensus size: 158
22780510 GTCCAAGCAG
* **
22780520 ACGGAGTTCATTCC-TAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCTA-CAAGATCGGTAGC
1 ACGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACCGAGGGTTGCGG-TAGCAGGATCGACAGC
* * * *
22780583 ACGCT--GGAGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACTGGCTGAGCGCC
64 ACG-TAGGGGGGGACCGGGCCGAT-CCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGCC
* * *
22780646 CGCACACCCGTTTCATGGGTTGGCTTAGGCAT
127 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
* ** * * * *
22780678 AGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCA
1 ACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCA
* * * * * * * *
22780742 TGCAGAGGGGGACCGAGCCGATCCTCGACTTTCGCA-TATGCCTCTTCGGCCGGCTCAGTGCCCG
65 CGTAGGGGGGGACCGGGCCGATCC-CGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGCCCG
* * * *
22780806 TATGCTCGTTTCGTGGGTTGACTTATGCAT
129 CACGCTCGTTTCGTGGGTTGGCTTAGGCAT
* *
22780836 ACAGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGCAGGATCGACAGCA
1 ACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCA
* * * * *
22780900 CGTAGGGGGGGATCGGGTCGATACCCGGCTTGCACATTTTGCCTCTCCGGCCGGCTGAGCGCCCG
65 CGTAGGGGGGGACCGGGCCGAT-CCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGCCCG
22780965 CACGCTCGTTTCGTGGGTTGGCTTAGGCAT
129 CACGCTCGTTTCGTGGGTTGGCTTAGGCAT
22780995 ACGGAGTTCATTCCATGTCTAAG
1 ACGGAGTTCATTCCATGTCTAAG
22781018 CATACTGAGT
Statistics
Matches: 273, Mismatches: 56, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
157 4 0.01
158 169 0.62
159 100 0.37
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
ACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCAC
GTAGGGGGGGACCGGGCCGATCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGGCTTAGGCAT
Found at i:22781027 original size:26 final size:26
Alignment explanation
Indices: 22780991--22781043 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22780981 GTTGGCTTAG
22780991 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
22781017 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22781043 G
1 G
22781044 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22781744 original size:26 final size:26
Alignment explanation
Indices: 22781713--22781765 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22781703 GTTGACTTAG
22781713 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
22781739 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
22781765 G
1 G
22781766 ACCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:22782245 original size:25 final size:25
Alignment explanation
Indices: 22782208--22782258 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 25
22782198 GTTGGTTTAG
22782208 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCA-GTCTAA
22782234 GCATAC-AAGTTCATTCCAGTCTAA
1 GCATACGAAGTTCATTCCAGTCTAA
22782258 G
1 G
22782259 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 7 0.28
25 12 0.48
26 6 0.24
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAGTCTAA
Found at i:22782455 original size:26 final size:26
Alignment explanation
Indices: 22782426--22782478 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22782416 GTTGACTTAG
22782426 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22782452 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22782478 G
1 G
22782479 ATTGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22782699 original size:22 final size:22
Alignment explanation
Indices: 22782665--22782714 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
22782655 TTGTGGCAAC
*
22782665 GGGACC-GGTAGCACGCAGAGG
1 GGGACCGGGTAGCACGCAGAGA
22782686 GGGACCGGGTAGCACGCAGAGA
1 GGGACCGGGTAGCACGCAGAGA
22782708 GGGACCG
1 GGGACCG
22782715 AGCCGATCAC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 6 0.22
22 21 0.78
ACGTcount: A:0.24, C:0.24, G:0.48, T:0.04
Consensus pattern (22 bp):
GGGACCGGGTAGCACGCAGAGA
Found at i:22783206 original size:26 final size:25
Alignment explanation
Indices: 22783148--22783206 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
22783138 TCGTGGGTTG
* *
22783148 ACTTAGGCATACAGAGTTCATCCCC
1 ACTTAAGCATACAGAGTTCATCCCA
* *
22783173 AGTCTAAGCATACGGAGTTCATTCCCA
1 ACT-TAAGCATACAGAGTTCA-TCCCA
22783200 ACTTAAG
1 ACTTAAG
22783207 ATCGAATCGG
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
25 2 0.07
26 19 0.70
27 6 0.22
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (25 bp):
ACTTAAGCATACAGAGTTCATCCCA
Found at i:22783403 original size:26 final size:26
Alignment explanation
Indices: 22783373--22783425 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22783363 GTTGGCTTAG
22783373 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
22783399 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22783425 G
1 G
22783426 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22784122 original size:26 final size:26
Alignment explanation
Indices: 22784093--22784145 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22784083 GTTGACTTAG
*
22784093 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
22784119 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22784145 G
1 G
22784146 ATCGAACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22784632 original size:26 final size:26
Alignment explanation
Indices: 22784582--22784634 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22784572 GTTGGCTTAG
**
22784582 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCACATCTAA
* *
22784608 GCATATGGAGTTCATTCCCCATCTAA
1 GCATACGGAGTTCATTCCACATCTAA
22784634 G
1 G
22784635 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACATCTAA
Found at i:22784977 original size:26 final size:26
Alignment explanation
Indices: 22784947--22785002 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
22784937 TGGGTTGACT
22784947 TAAGCATAC-AGAGTTCA-TCCCTAGTC
1 TAAGCATACGA-AGTTCATTCCC-AGTC
22784973 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
22784999 TAAG
1 TAAG
22785003 ATCGGACCGG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:22785488 original size:26 final size:26
Alignment explanation
Indices: 22785452--22785504 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22785442 GTTGGCTTAG
*
22785452 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
22785478 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22785504 G
1 G
22785505 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22785705 original size:26 final size:25
Alignment explanation
Indices: 22785661--22785712 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
22785651 GTTGACTTGG
22785661 GCATACGAGTTCATCCCCAGTCTAA
1 GCATACGAGTTCATCCCCAGTCTAA
*
22785686 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACG-AGTTCATCCCCAGTCTAA
22785712 G
1 G
22785713 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (25 bp):
GCATACGAGTTCATCCCCAGTCTAA
Found at i:22786557 original size:552 final size:551
Alignment explanation
Indices: 22785367--22786816 Score: 1802
Period size: 552 Copynumber: 2.6 Consensus size: 551
22785357 AGCACGTAAG
* * * * *
22785367 GGGGGACCGGGTCGGTCCTCGGCTTGTGCATTCTACCTCTCCGGCTGGCTGAGCGCCCGCACACT
1 GGGGGATCGGGTCGATCCTCGACTTGCGCATTCTACCTCTCCGGCTGGCTGAGCGCCCGCACGCT
* *
22785432 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCC
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
* * * * * * *
22785497 AGTCTAAGATCGGATCAGACCGAGGGTTGCAACAACAGGACCAGCAGTAAGATCGGCAACACGCA
131 AGTCTAAGATCAGAACAGACCGAGGGTTGCGACAGCAGGACCAGCAGTAGGATCGGTAGCACGCA
* * * * *
22785562 GGGGGGATCAGGTCGATCCCCAACTTTTGCATTCTGCCTCTCCAGCTGGCCTCTCCAG-TCGGCT
196 GAGGGGACCAGGCCGATCCCCAACTTTTGCATTCTGCCTCTCCGGCCGGCCTCTCCAGCT-GGCT
* * * *
22785626 GAGCA-TCCGCACGCTTGTTTTGTGGGTTGACTTGGGCATAC-GAGTTCATCCCCAGTCTAAGCA
260 GAGCACT-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCA
* * *
22785689 TACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGCGGCAATAGGATCGACAACA
324 TACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTACGGCAACAGGATCGACAACA
* * * * * *
22785754 CGCAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCAGCTGACTGAGCGCCCGTA
389 CGCAGGGGGACCGGGCCGATCCCCAGCTTGAGCATTCTGCCTCTCCAGCCGACTGAGCACCAGTA
* *
22785819 TGCCTGTTTCGTGGGTTGGTTGAGGCATAGGGAATTCATTCCATATCTAAGCCCCAGTCGAAAAG
454 TGCCCGTTTCGTGGGTTGGTTGAGGCATAGGGAATTCATTCCATATCTAAGCCCCAGCCGAAAAG
* * * * *
22785884 AGGGTTGTGGCAGCGGGACCGATAGAATGTGGA
519 AGGGTTGTGGCAGCGAGACCGACAAAAAGTAGA
** * * * * *
22785917 AAGGGATCAGGCCGATCCTCGACTTGTC-CATTTTACCTCTCCGGCTGGCTGAGCACCCGCATGC
1 GGGGGATCGGGTCGATCCTCGACTTG-CGCATTCTACCTCTCCGGCTGGCTGAGCGCCCGCACGC
* *
22785981 TCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTGATTCC
65 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
* * * *
22786046 CAATCTAAGACCAGAACGGACCGAGGGTTGCGACAGCAGGACCAGCAGCAGGATCGGTAGCACGC
130 CAGTCTAAGATCAGAACAGACCGAGGGTTGCGACAGCAGGACCAGCAGTAGGATCGGTAGCACGC
** * * * * **
22786111 AGAGGGGACCAGGCCGATCCTTAACTTTTGCATTCTGCCTTTTCGGCCGGCCTGTCCGGCTGGAA
195 AGAGGGGACCAGGCCGATCCCCAACTTTTGCATTCTGCCTCTCCGGCCGGCCTCTCCAGCTGGCT
* *
22786176 GAGCACTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCAC
260 GAGCACTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCAT
* ** * * * ** *
22786241 ACGGAGTTCATTCCCAGTGTAAGATCGAACTGGACCGAGGGTTATGGCAACAGGGTCGGTAGCAC
325 ACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTACGGCAACAGGATCGACAACAC
* * * **
22786306 GCAGGGGGGATCGGGCCGATCCCCAGCTTGATCATTCTGCCTCTCCGGCCGGTTGAGCACCAGTA
390 GCA-GGGGGACCGGGCCGATCCCCAGCTTGAGCATTCTGCCTCTCCAGCCGACTGAGCACCAGTA
* * * * **
22786371 TGCCCGTTTTGTGGGTTGGCTT-AGGCATAGTGAGTTCATTCCATGTCTAAGCCCCAGCCAGATC
454 TGCCCGTTTCGTGGGTTGG-TTGAGGCATAGGGAATTCATTCCATATCTAAGCCCCAGCC-GAAA
* *
22786435 A-AGGGTTGTGGTAGTGAGACCGACAAAAAGTAGA
517 AGAGGGTTGTGGCAGCGAGACCGACAAAAAGTAGA
* *
22786469 GGGGGATCGGGTCGATCCTCGACTTGCGCATTCTGCCTCT-CGAG-TCGGTTGAGCGCCCGCACG
1 GGGGGATCGGGTCGATCCTCGACTTGCGCATTCTACCTCTCCG-GCT-GGCTGAGCGCCCGCACG
* *
22786532 CTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTTACGGAGTTCATTC
64 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
* * ** *
22786597 CCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGACCAGCAGTAGGATTGGTAGCACG
129 CCAGTCTAAGATCAGAACAGACCGAGGGTTGCGACAGCAGGACCAGCAGTAGGATCGGTAGCACG
* * *** * * * * *
22786662 TAGAGGGGACC-GGACCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCGACCCCTCTAGCCGG
194 CAGAGGGGACCAGG-CCGATCCCCAACTTTTGCATTCTGCCTCTCCGGCCGGCCTCTCCAGCTGG
* * *
22786726 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGT
258 CTGAGCACTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGC
22786791 ATACGGAGTTCATTCCCAGTCTAAGA
323 ATACGGAGTTCATTCCCAGTCTAAGA
22786817 GTTTGAGCCA
Statistics
Matches: 759, Mismatches: 130, Indels: 20
0.83 0.14 0.02
Matches are distributed among these distances:
550 251 0.33
551 85 0.11
552 418 0.55
553 5 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (551 bp):
GGGGGATCGGGTCGATCCTCGACTTGCGCATTCTACCTCTCCGGCTGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
AGTCTAAGATCAGAACAGACCGAGGGTTGCGACAGCAGGACCAGCAGTAGGATCGGTAGCACGCA
GAGGGGACCAGGCCGATCCCCAACTTTTGCATTCTGCCTCTCCGGCCGGCCTCTCCAGCTGGCTG
AGCACTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTACGGCAACAGGATCGACAACACG
CAGGGGGACCGGGCCGATCCCCAGCTTGAGCATTCTGCCTCTCCAGCCGACTGAGCACCAGTATG
CCCGTTTCGTGGGTTGGTTGAGGCATAGGGAATTCATTCCATATCTAAGCCCCAGCCGAAAAGAG
GGTTGTGGCAGCGAGACCGACAAAAAGTAGA
Found at i:22786593 original size:26 final size:26
Alignment explanation
Indices: 22786557--22786606 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
22786547 GGCTTAGGCA
22786557 TACGGAGTTCATT-CCATGTCTAAGCT
1 TACGGAGTTCATTCCCA-GTCTAAGCT
22786583 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
22786607 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:22786801 original size:26 final size:26
Alignment explanation
Indices: 22786765--22786815 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
22786755 TGACTTAGGC
22786765 ATACGGAGTTCA-TCCCTAGTCTAAGT
1 ATACGGAGTTCATTCCC-AGTCTAAGT
22786791 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
22786816 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:22787515 original size:26 final size:26
Alignment explanation
Indices: 22787485--22787537 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22787475 GTTGACTTAG
22787485 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22787511 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22787537 G
1 G
22787538 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22787907 original size:159 final size:159
Alignment explanation
Indices: 22787619--22788013 Score: 373
Period size: 159 Copynumber: 2.5 Consensus size: 159
22787609 ACTCATTTTA
* * * * * * * *** ** *
22787619 CCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGTTTGGGTTAGGCATAGGGAGTTCAT
1 CCTCTCCGACAGACTCAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACAGACTTCAT
** * ** * * *
22787684 TCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTATGGTAGCAGGATCGATAGCACGCAGAGGGGG
66 TCCATGTCTAAG-ATCAGACCGGACTAAGGGTTATGGTAGAAGGATCGACAGCACACAGAGGGGG
*
22787748 ATCAAGCCAATCCCCGACTTGCACATTGTG
130 ATCAAGCCAATCCCCGACTTGCACATTCTG
* *
22787778 CCTCTCCGACAGGCTCAGCACCCGCACGCTCGTTTTGTGGGGTTAACTTAGGCATACAGACTTCA
1 CCTCTCCGACAGACTCAGCACCCGCACGCTCGTTTCGT-GGGTTAACTTAGGCATACAGACTTCA
* *
22787843 TTCCCA-GTCTAAGATCAGACCGGACTAAGGGTTGTGGTAGAAGGATCGACAGCACATAGA-GGG
65 TT-CCATGTCTAAGATCAGACCGGACTAAGGGTTATGGTAGAAGGATCGACAGCACACAGAGGGG
** * ** *
22787906 GATCGGGTCGGTCCCTGACTTGCACATTCTG
129 GATCAAGCCAATCCCCGACTTGCACATTCTG
* * ** * ** * *
22787937 CCTCTCCGACCGACTGAGTGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCCGACAGACTCAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACAGACTTCAT
22788002 TCCATGTCTAAG
66 TCCATGTCTAAG
22788014 CATACAGAGT
Statistics
Matches: 191, Mismatches: 41, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 3 0.02
158 31 0.16
159 93 0.49
160 61 0.32
161 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
CCTCTCCGACAGACTCAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACAGACTTCAT
TCCATGTCTAAGATCAGACCGGACTAAGGGTTATGGTAGAAGGATCGACAGCACACAGAGGGGGA
TCAAGCCAATCCCCGACTTGCACATTCTG
Found at i:22788037 original size:26 final size:26
Alignment explanation
Indices: 22787987--22788039 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22787977 GTTGGCTTAG
* **
22787987 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCAAATCTAA
22788013 GCATACAGAGTTCATTCCAAATCTAA
1 GCATACAGAGTTCATTCCAAATCTAA
22788039 G
1 G
22788040 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAATCTAA
Found at i:22788384 original size:26 final size:26
Alignment explanation
Indices: 22788354--22788404 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
22788344 GTTGACTTAG
*
22788354 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22788380 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
22788405 TGGTCGGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22789404 original size:26 final size:26
Alignment explanation
Indices: 22789368--22789420 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22789358 GTTGGCTTAG
22789368 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
22789394 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22789420 G
1 G
22789421 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22790673 original size:26 final size:26
Alignment explanation
Indices: 22790644--22790696 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22790634 GTTGACTTAG
22790644 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22790670 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22790696 G
1 G
22790697 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22790978 original size:554 final size:554
Alignment explanation
Indices: 22789906--22791003 Score: 1465
Period size: 554 Copynumber: 2.0 Consensus size: 554
22789896 TCGTCTTGCG
22789906 ACGAAACTTCACATGAAGGCATAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTA
1 ACGAAACTTCACATGAAGGCATAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTA
** *
22789971 GCAAGGGAAAAATATGAAGATGTGCTTGAACCCACCTACCACCGATTCGATCCCCGACTTGCGCA
66 GCAAGACAAAAATATGAAGATGTGCTTGAACCCACCTACCACCGATTCGATCCCCGACTTGCACA
* * *
22790036 TCCTGCCTCTCTGATCGGCTGAGCGTCCGTAGCTCGTTTCATGGGTTGACTTAGGCATACAGAGT
131 TCCTGCCTCTCTGATCGGCTGAGCATCCGCAACTCGTTTCATGGGTTGACTTAGGCATACAGAGT
* * * *
22790101 TCATCCCTAGTCTAAGCATACAGAGGTCATTTCCAATCTAAGATCAAATCTGACCGAGGGTTACG
196 TCATCCCCAGTCTAAGCATACAGAGGTCATTCCCAATCTAAGATCAAACCGGACCGAGGGTTACG
* * *
22790166 GCAGCAGGATCGACAACACGCAGGAGGGACCGGGCCGATCCTCGACTTATGCATTTGCCTCTCCG
261 GCAGCAGGATCAACAACACGCAGGAGGGACCGGGCCAATCCTCGACTTACGCATTTGCCTCTCCG
* * * * *
22790231 ACCAGCTGAGTGCCCGCACTCCGATTTCATGGGTTAGCTTATGCATAGGGAGTTCATTCCATGTC
326 ACCAGCTGAGCGCCCACACCCCGATTTCATAGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTC
* * ** * ** *
22790296 TAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACTGGTAGGACGTAGATGGTGATCAGGTCG
391 TAAGCCCCAGACAGACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAGATGGCGATCAGGTCG
* * * * * **
22790361 ATCCTCGGCTTGCGCATTATGCCTTTTCGGCTGGTTCAGCGCTCGCACGCTTGTTCCGTGGGTT-
456 ATCCCCGACTTGCGCATTATGCCTCTCCGGCTGGCTCAGCGCTCGCACGCTCATTCCGTGGGTTG
22790425 ACTTAGGCATACT-GAGTTCATTCCATGTCCTACC
521 ACTTAGGCATA-TGGAGTTCATTCCATGTCCTACC
22790459 ACGAAACTTCACATGAAGGCATAGGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
1 ACGAAACTTCACATGAAGGCATA-GGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
22790524 GGCATGACAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCG-TTCGATCCCCGGCTTGCA
65 AGCAAGACAAAAATATGAAGATGTGCTTGAACCCACCTACCA-CCGATTCGATCCCCGACTTGCA
* ** *
22790588 CATCCTGCCTCTCTGGTCGGCTGAGCATTTGCACACTCGTTTCAT-GGTTGACTTAGGCATACGG
129 CATCCTGCCTCTCTGATCGGCTGAGCATCCGCA-ACTCGTTTCATGGGTTGACTTAGGCATACAG
* * * ** *
22790652 AGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTT
193 AGTTCATCCCCAGTCTAAGCATACAGAGGTCATTCCCAATCTAAGATCAAACCGGACCGAGGGTT
** * * * * * *
22790717 GTGGCAGTAGGATCAACAGCACGCAGG-GGGACCGGGTCAATCC-CTGGCTTGCGTATTCTGCCT
258 ACGGCAGCAGGATCAACAACACGCAGGAGGGACCGGGCCAATCCTC-GACTTACGCATT-TGCCT
* * * *
22790780 CTTCGATCGGCTGAGCGCCCACACGCCCG-TTTCATAGGTTAGCTTAGGCATAGGGAGTTCATTT
321 CTCCGACCAGCTGAGCGCCCACAC-CCCGATTTCATAGGTTAGCTTAGGCATAGGGAGTTCATTC
* * * *
22790844 CATGTCTAAGCCCTAGACGGACTGAGGGTTGTGGCAGCGGGACCGACAGCACACAGATGGCGATC
385 CATGTCTAAGCCCCAGACAGACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAGATGGCGATC
* * * *
22790909 AGG-CTGATCCCCGACTTGTGCATTATGCCTCTCCGGCTGGCTCAGTGCTCGCATGCTCATTTCG
450 AGGTC-GATCCCCGACTTGCGCATTATGCCTCTCCGGCTGGCTCAGCGCTCGCACGCTCATTCCG
22790973 TGGGTTGACTTAGGCATATGGAGTTCATTCC
514 TGGGTTGACTTAGGCATATGGAGTTCATTCC
22791004 TAGTCTAAGA
Statistics
Matches: 469, Mismatches: 67, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
552 1 0.00
553 46 0.10
554 384 0.82
555 38 0.08
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (554 bp):
ACGAAACTTCACATGAAGGCATAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTA
GCAAGACAAAAATATGAAGATGTGCTTGAACCCACCTACCACCGATTCGATCCCCGACTTGCACA
TCCTGCCTCTCTGATCGGCTGAGCATCCGCAACTCGTTTCATGGGTTGACTTAGGCATACAGAGT
TCATCCCCAGTCTAAGCATACAGAGGTCATTCCCAATCTAAGATCAAACCGGACCGAGGGTTACG
GCAGCAGGATCAACAACACGCAGGAGGGACCGGGCCAATCCTCGACTTACGCATTTGCCTCTCCG
ACCAGCTGAGCGCCCACACCCCGATTTCATAGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTC
TAAGCCCCAGACAGACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAGATGGCGATCAGGTCG
ATCCCCGACTTGCGCATTATGCCTCTCCGGCTGGCTCAGCGCTCGCACGCTCATTCCGTGGGTTG
ACTTAGGCATATGGAGTTCATTCCATGTCCTACC
Found at i:22791154 original size:158 final size:157
Alignment explanation
Indices: 22790670--22791170 Score: 483
Period size: 159 Copynumber: 3.2 Consensus size: 157
22790660 CCCAGTCTAA
* * *
22790670 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGTAGGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * * *
22790734 AGCACGCA-GGGGGACCGGGTCAATCCCTGGCTTGCGTATTCTGCCTCTTCGATCGGCTGAGCGC
65 AGCACGCAGGGGGGATCGAGCCGATCCC-CGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGC
* * * *
22790798 CCACACGCCCGTTTCATAGGTTAGCTTAG
129 CCGCATGCTCGTTTCATAGGTTGGCTTAG
* * ** * *
22790827 GCATAGGGAGTTCATTTCATGTCTAAGCCCTAGA-CGGACTGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATC-AGACCGGACTGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
22790891 AGCACACAGATGGCGATC-AGGCTGATCCCCGACTTGTGCATTATGCCTCTCCG-GCTGGCTCAG
65 AGCACGCAG-GGGGGATCGA-GCCGATCCCCG-CTTGTGCATTCTGCCTCTCCGATC-GGCTGAG
* * * * * *
22790954 TGCTCGCATGCTCATTTCGTGGGTTGACTTAG
126 CGCCCGCATGCTCGTTTCATAGGTTGGCTTAG
* * * * * *
22790986 GCATATGGAGTTCATTCC-TAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAAGATCGAT
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGAC
* * * *
22791050 AGCACGTAGGGGGGATCGAGCCGGTCCCCAGCTTATGCATTCTGCCTCTCCGATCGGCTGAACGC
65 AGCACGCAGGGGGGATCGAGCCGATCCCC-GCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGC
22791115 CCGCATGCTCGTTTCATAGGTTGGCTTAG
129 CCGCATGCTCGTTTCATAGGTTGGCTTAG
22791144 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
22791171 CATACAGAGT
Statistics
Matches: 268, Mismatches: 63, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
156 2 0.01
157 56 0.21
158 96 0.36
159 114 0.43
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGATCGAGCCGATCCCCGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
GCATGCTCGTTTCATAGGTTGGCTTAG
Found at i:22791174 original size:26 final size:26
Alignment explanation
Indices: 22791144--22791196 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22791134 GTTGGCTTAG
*
22791144 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
22791170 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
22791196 G
1 G
22791197 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:22791553 original size:26 final size:26
Alignment explanation
Indices: 22791523--22791575 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22791513 GTTGACTTAG
*
22791523 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
* *
22791549 GCATATGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
22791575 G
1 G
22791576 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:22791901 original size:26 final size:26
Alignment explanation
Indices: 22791865--22791916 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22791855 TTGGCTTAGC
22791865 CATACAGAGTTCATT-CCATGTCTAAG
1 CATACAGAGTTCATTCCCA-GTCTAAG
*
22791891 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
22791917 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:22792278 original size:26 final size:26
Alignment explanation
Indices: 22792242--22792294 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22792232 GTTGACTTAG
*
22792242 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
22792268 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22792294 G
1 G
22792295 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22792618 original size:26 final size:26
Alignment explanation
Indices: 22792569--22792621 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22792559 GTTGGCTTAG
*
22792569 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
22792595 GCATACGGAGTTTATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
22792621 G
1 G
22792622 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:22792956 original size:159 final size:159
Alignment explanation
Indices: 22792688--22792975 Score: 407
Period size: 159 Copynumber: 1.8 Consensus size: 159
22792678 AGGAGTGGAC
* * * * *
22792688 CGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGATCAGCTGAGCGCCCACATGCCCGTTTCG
1 CGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGATCAGCTGAGCGCCCACACGCCCATTTCA
** **
22792753 TGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTACACCCCAGCCGGATTGAGGGTTGTGGC
66 TGAGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTACACCCCAGCCGGACCGAGGGTTGTGGC
22792818 AGTGGGATCGACAGCACGCAGAGGGGGAA
131 AGTGGGATCGACAGCACGCAGAGGGGGAA
* * * * *
22792847 CGGGTCGATCCCCGACTTATGCATTCTGCCTCTCCGATCGGCTGAGTGCCCACACGCTCATTTCA
1 CGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGATCAGCTGAGCGCCCACACGCCCATTTCA
* * *
22792912 TGGGTTGGCTTAGGCTTACAGAGTTCATTCTATGTCTA-AGCCCCAGCCGGACCGAGGGTTGTGG
66 TGAGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTACA-CCCCAGCCGGACCGAGGGTTGTGG
22792976 TAGCAGGATC
Statistics
Matches: 111, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
158 1 0.01
159 110 0.99
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.24
Consensus pattern (159 bp):
CGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGATCAGCTGAGCGCCCACACGCCCATTTCA
TGAGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTACACCCCAGCCGGACCGAGGGTTGTGGC
AGTGGGATCGACAGCACGCAGAGGGGGAA
Found at i:22792985 original size:159 final size:159
Alignment explanation
Indices: 22792657--22792991 Score: 404
Period size: 159 Copynumber: 2.1 Consensus size: 159
22792647 AACAGGACCA
** * * * * *
22792657 GCAGCAGGATCGGTAGCATGCAG-GAGTGGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCT
1 GCAGCAGGATCGACAGCACGCAGAG-GGGGAACGGGCCGATCCCCGACTTACGCATTCTGCCTCT
* * * **
22792721 CCGATCAGCTGAGCGCCCACATGCCCGTTTCGTGAGTTGGCTTAGGCATAGGGAGTTCATTCCAT
65 CCGATCAGCTGAGCGCCCACACGCCCATTTCATGAGTTGGCTTAGGCATACAGAGTTCATTCCAT
**
22792786 GTCTACACCCCAGCCGGATTGAGGGTTGTG
130 GTCTACACCCCAGCCGGACCGAGGGTTGTG
** * *
22792816 GCAGTGGGATCGACAGCACGCAGAGGGGGAACGGGTCGATCCCCGACTTATGCATTCTGCCTCTC
1 GCAGCAGGATCGACAGCACGCAGAGGGGGAACGGGCCGATCCCCGACTTACGCATTCTGCCTCTC
* * * * * *
22792881 CGATCGGCTGAGTGCCCACACGCTCATTTCATGGGTTGGCTTAGGCTTACAGAGTTCATTCTATG
66 CGATCAGCTGAGCGCCCACACGCCCATTTCATGAGTTGGCTTAGGCATACAGAGTTCATTCCATG
22792946 TCTA-AGCCCCAGCCGGACCGAGGGTTGTG
131 TCTACA-CCCCAGCCGGACCGAGGGTTGTG
* *
22792975 GTAGCAGGATCGGCAGC
1 GCAGCAGGATCGACAGC
22792992 GCGATCAGTA
Statistics
Matches: 146, Mismatches: 28, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
158 1 0.01
159 144 0.99
160 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
GCAGCAGGATCGACAGCACGCAGAGGGGGAACGGGCCGATCCCCGACTTACGCATTCTGCCTCTC
CGATCAGCTGAGCGCCCACACGCCCATTTCATGAGTTGGCTTAGGCATACAGAGTTCATTCCATG
TCTACACCCCAGCCGGACCGAGGGTTGTG
Found at i:22793145 original size:26 final size:26
Alignment explanation
Indices: 22793109--22793161 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22793099 GTTGACTTAG
22793109 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
22793135 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
22793161 G
1 G
22793162 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:22793485 original size:26 final size:26
Alignment explanation
Indices: 22793455--22793504 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
22793445 GGCTGAGGCA
22793455 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGGAGTTCATTCCCA-GTCTAAGCG
22793481 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
22793505 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:22793809 original size:353 final size:343
Alignment explanation
Indices: 22793079--22793832 Score: 784
Period size: 353 Copynumber: 2.2 Consensus size: 343
22793069 CGATTGAGTG
* * * * *
22793079 CCCGCTCGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCTAGTCTAAGCATATGG
1 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATACGG
* * * * *
22793143 AGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGTGACAGTAGGATCGACAACATGTAG
65 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGAAAACATGTAG
* *
22793208 AGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGTCTGAGCACCCGCACGCC
130 AGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCC
* * * *
22793273 TATTTTGTCGGTTGACTTAGGCATAGGGGGCTCATTCCATGTCTAAGCCCCAGCCGGACCAAAGG
195 CATTTCGTCGGTTGACTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAGACCAAAGG
* ** *
22793338 TTGTGGCAATGGGACCGACAGCACGCAGAGGGGGACCGGACCGATCCCTGACCTGTGCATTCTGC
260 TTGTGGCAACGGGACCGACAGCACGCAGAGGGGGACCGGACCGATCCCTGACCTACGCACTCTGC
**
22793403 CTCTCCAGCCGGATGAGTG
325 CTCTCCAGCCGGATGAGCA
* * *
22793422 CCCACACGCTCATTTCATGGGTTGGCTGAGGCATACGGAGTTCATTCCATGTCTAAGCGTACGGA
1 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
*
22793487 GTTCATTCCCAGTCTAAGATCAGACCGGACCGATGGTTGCGACAGTAGGA-C-AAATAGCAGGAT
66 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGAAA-A-C---AT
* * * * * *
22793550 AGATAGCACACAGGGGGACCGGGTCGATTCTC-GACTTGTGCATTCTGCCTCTCCGGCCGACTGA
126 -G-TAG-----A-GGGGACCGAGCCGATCCCCAG-CTTGCGCATTCTGCCTCTCCGACCGACTGA
** * * * * * * ** **
22793614 GTGCCTGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGTATTTCATTCCATGTC-AAGCCCTG
182 GCACCCGCACGCCCATTTCGTCGGTTGACTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCA
* ** * * * *
22793678 GCCAGACCGAAGGTTGTGGCAACGGGACCGGTAGCATGCAGAGGGGGATC-GAGCTGATCCCTGG
247 GCCAGACCAAAGGTTGTGGCAACGGGACCGACAGCACGCAGAGGGGGACCGGA-CCGATCCCTGA
* * * *
22793742 CTTACGCACTCTGTCTCT-CAGGTCGGTTGAGCA
311 CCTACGCACTCTGCCTCTCCA-GCCGGATGAGCA
* * *
22793775 CCCGCGCGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
22793833 CCCAGCCGGA
Statistics
Matches: 334, Mismatches: 60, Indels: 24
0.80 0.14 0.06
Matches are distributed among these distances:
341 2 0.01
342 2 0.01
343 98 0.29
344 4 0.01
346 2 0.01
347 1 0.00
348 3 0.01
352 4 0.01
353 134 0.40
354 84 0.25
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (343 bp):
CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGAAAACATGTAGA
GGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCCC
ATTTCGTCGGTTGACTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAGACCAAAGGT
TGTGGCAACGGGACCGACAGCACGCAGAGGGGGACCGGACCGATCCCTGACCTACGCACTCTGCC
TCTCCAGCCGGATGAGCA
Found at i:22794290 original size:26 final size:26
Alignment explanation
Indices: 22794261--22794313 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22794251 GTTGACTTAG
*
22794261 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
*
22794287 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
22794313 G
1 G
22794314 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:22794673 original size:159 final size:157
Alignment explanation
Indices: 22794287--22794684 Score: 372
Period size: 159 Copynumber: 2.5 Consensus size: 157
22794277 CCCAGTCTAA
* * *
22794287 GCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGGACAGAGGGTTGCGACAGCAAGATTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACA-AGGGTTGCGACAGCAAGATCGACA
* * * * * * * * *
22794352 GCACACAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
65 GCACGCAGAGGGGACCGGGTCAATCCCCGGCTTGCGCATTATGCCTCTCCGATCGACTCAACGCA
** * *
22794417 CTTACGCTCGTTTCATGGGTTGGCTTAT
130 CAAACGCTCGTTTCATGGGTTGACTTAG
* * ** * * * * ** *
22794445 GCATAGGGAGTTCATT-CCATTTCTAAGCCCCAG-TCGGACCAAAGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGA-CAAGGGTTGCGACAGCAAGATCGA
* * *
22794508 CAGCACGCAGAAGGGGACCGAGGT-AATCCCCGGCTTGTGCATTATGTCTCTTCGA-CAGACTCA
63 CAGCACGCAG-AGGGGACCG-GGTCAATCCCCGGCTTGCGCATTATGCCTCTCCGATC-GACTCA
22794571 ACGCACAAACGCTCGTTTCATGGGTTGACTTAG
125 ACGCACAAACGCTCGTTTCATGGGTTGACTTAG
* * * *
22794604 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGAAAGTATGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CAAGGGTTGCGACAGCAAGATCGACA
* *
22794669 GCACGAAGGGGGGACC
65 GCACGCAGAGGGGACC
22794685 AGGCCGGTCC
Statistics
Matches: 185, Mismatches: 47, Indels: 16
0.75 0.19 0.06
Matches are distributed among these distances:
157 3 0.02
158 58 0.31
159 118 0.64
160 6 0.03
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.21
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAAGGGTTGCGACAGCAAGATCGACAG
CACGCAGAGGGGACCGGGTCAATCCCCGGCTTGCGCATTATGCCTCTCCGATCGACTCAACGCAC
AAACGCTCGTTTCATGGGTTGACTTAG
Found at i:22794812 original size:26 final size:26
Alignment explanation
Indices: 22794762--22794814 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22794752 GTTGGCTTAG
*
22794762 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
22794788 GCATACGGAGTTCATTTCCA-ATCTAA
1 GCATACGAAGTTCA-TTCCATATCTAA
22794814 G
1 G
22794815 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:22795544 original size:25 final size:26
Alignment explanation
Indices: 22795515--22795566 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
22795505 GTTGACTTAG
22795515 GCATACGGAGTTCATCCCT-GTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
22795540 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
22795566 G
1 G
22795567 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:22795901 original size:159 final size:159
Alignment explanation
Indices: 22795678--22796042 Score: 364
Period size: 159 Copynumber: 2.3 Consensus size: 159
22795668 CCCGCACGCC
* * * * *
22795678 CGTTTCGTGGGTT-AGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAATCGGATCGAGG
1 CGTTTAGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAACCAGATCGAGG
** ** *
22795742 GTTGTGGCAGCGGGACCGATAGCACGCA-GAGGGGGACCGGGCCAATCCCCGGCTTACGCATTAT
65 GTTACGGCAGCAAGACCGATAGCACACATG-GGGGGACCGGGCCAATCCCCGGCTTACGCATTAT
* *
22795806 CCCTCTCCGACTAGCTCAGTGCCCCCGCACT
129 CCCTCTCCGACTAGCTCAGCGCCCCCACACT
*
22795837 CGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCAGA-CTGA
1 CGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCTA-ACCAGATC-GA
* * * * * ** *
22795899 GGGTTACGGTAGTAAGATCGATAGCACATATGGGGGGACCGGGTCGGTCCCCGGCTTACGCATTC
63 GGGTTACGGCAGCAAGACCGATAGCACACATGGGGGGACCGGGCCAATCCCCGGCTTACGCATTA
** * * * * *
22795964 TGGCTTTCTGGCTGGCTCAGCGCCCGCACACT
128 TCCCTCTCCGACTAGCTCAGCGCCCCCACACT
* *
22795996 CATTTCA-TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CGTTT-AGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
22796043 CATACGGAGT
Statistics
Matches: 169, Mismatches: 30, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
158 5 0.03
159 158 0.93
160 6 0.04
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
CGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAACCAGATCGAGGG
TTACGGCAGCAAGACCGATAGCACACATGGGGGGACCGGGCCAATCCCCGGCTTACGCATTATCC
CTCTCCGACTAGCTCAGCGCCCCCACACT
Found at i:22796046 original size:26 final size:25
Alignment explanation
Indices: 22796016--22796067 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
22796006 GTTGGCTTAG
22796016 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
22796042 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
22796067 G
1 G
22796068 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:22797318 original size:159 final size:156
Alignment explanation
Indices: 22796958--22797331 Score: 408
Period size: 159 Copynumber: 2.4 Consensus size: 156
22796948 CCTTATCTAA
* * * * *
22796958 GCATACAGAGTTCATTCCCAGTCTAAGGTCGGACCAGACCGAGGGTTTCGACAGCAAGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAA-GTCGGACCAGACTGAGGGTTT-GGCAGCAGGACTGACA
* * * * *
22797023 GCACGCAGAGGGGACCGAGCCGATCCCCGGCTTGCGCATTTTACCTCTCCGACCGGTTGAGCGCC
64 GCACGCAGAGGGGACCGAGCCGATCCCCAGCTTACGCATTATACCTCTCCGACCGGCTCAGCGCC
* * *
22797088 CGTACGCCCGTTTTGTGGGTTGGCTTAG
129 CGTACGCCCATTTCGTGGGTTGACTTAG
* * * ** * * *
22797116 GCATAGGGAGCTCATT-CCATGTCTAAGCCCCAGCTAAACTGAGGGTTGTGGCAGCAGGACTGCC
1 GCATACGGAGTTCATTCCCA-GTCTAAGTCGGA-CCAGACTGAGGGTT-TGGCAGCAGGACTGAC
* * * * *
22797180 AGCATGCAGAGGGGGACTGGGCCGATCCCCAGCTTACGCATTATGCCTCTCCGATCGGCTCAGCG
63 AGCACGCAGA-GGGGACCGAGCCGATCCCCAGCTTACGCATTATACCTCTCCGACCGGCTCAGCG
*
22797245 CCCGTACGCTCATTTCGTGGGTTGACTTAG
127 CCCGTACGCCCATTTCGTGGGTTGACTTAG
* *
22797275 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTATGGTAGCAG
1 GCATACGGAGTTCATTCCCAGTCTAAG-TCGGACCAGACTGAGGGTT-TGGCAGCAG
22797332 TATCGATAGC
Statistics
Matches: 173, Mismatches: 37, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
157 6 0.03
158 50 0.29
159 112 0.65
160 5 0.03
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGTCGGACCAGACTGAGGGTTTGGCAGCAGGACTGACAGC
ACGCAGAGGGGACCGAGCCGATCCCCAGCTTACGCATTATACCTCTCCGACCGGCTCAGCGCCCG
TACGCCCATTTCGTGGGTTGACTTAG
Found at i:22798048 original size:884 final size:879
Alignment explanation
Indices: 22796360--22798205 Score: 2173
Period size: 884 Copynumber: 2.1 Consensus size: 879
22796350 TGGTCAACCG
* * * *
22796360 AGCGCCCACACTCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCA
1 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * *
22796425 AACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGAGACCGGGCTTACCCCCGGC
66 GACCAGACCGAGGGTTATGGTAGCAGGATCGACAGCACGAAGGGGAGACAGGGCTGACCCCCGAC
* * * *
22796490 TTGTACATTCTGCCTCTCTGGCCGGCTGAGTGCCCATATGCTCATTTCCTGGGTTGGCTTAGGCA
131 TTGCACATTCTGCCTCTCTGACCGGCTGAGTGCCCATACGCTCATTTCCTGGGTTGCCTTAGGCA
* * * *** * *
22796555 TATGGAATTCATTCCATGCCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGAATTGA
196 GATCGAATTCATTCCATGCCTAAGCATAAAAAGTTCATTCCCAGTCTAAGATCGAACCGAATCGA
* * * *
22796620 GGGTTGCGGCTACAGGACCAACAACAGGATCGGTAGCACGTAGGGAGGGATCGGGTCGATCCCCA
261 GAGTTGCGGCTACAGGACCAACAACAGGATCGGCAGCACGTAGGGAGGGATCGAGCCGATCCCCA
* * * * *
22796685 GCTTGCACATTTTACCTCTCCTGTCAGTTGAACACCCGCACCCTCATTTCCTGGGTTGGCTTAGG
326 GCTTGCACATTCTACCTCTCCGGCCAGCTGAACACCCGCACCCTCATTTCCTGGCTTGGCTTAGG
* *
22796750 CATACGGAGTTCATTCCATGTCTAAACCGCAGTCGGACCGAGGGTTGTGGCAGCAGGATCGGTAA
391 CATACGGAGTTCATTCCATGTCTAAACCGCAGCCGAACCGAGGGTTGTGGCAGCAGGATCGGTAA
* * * *
22796815 TCGGATCGACAGCACGCAGAGGGGACCGGGCTGATCCCCGACTTGGACATTATGCCTCTTCGACC
456 TCAGATCGACAGCACGCAGAGGGGACCGGGCTGATCCCCGACTTGCACATTATGCCTCTCCGACA
* * *
22796880 GACCGCTCCGGTCGGCTGAGCGCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTC
521 GACCGCTCCGGTCGGCTGAGCCCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTC
* *
22796945 ATCCCTTATCTAAGCATACAGAGTTCATTCCCAGTCTAAGGTCGGACCAGACCGAGGGTTTCGAC
586 ATCCC-TATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCGAC
* *
22797010 AGCAAGATTGACAGCACGCAGAGGGGACCGAGCCGATCCCCGGCTTGCGCATTTTACCTCTCCGA
649 AGCAAGATCGACAGCACGCAGAGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGA
* * * **
22797075 CCGGTTGAGCGCCCGTACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCT
714 CCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCT
* * *
22797140 AAGCCCCAGCTAAACTGAGGGTTGTGGCAGC-AGGA-CTGCCAGCATGCAGAGGGGGA-CTGGGC
779 AAGCCCCAGCCAAACTGAGGGTTGTGGCAGCGA-GACCAG-CAGCACGCAGAGGGGGATC-GGGC
* *
22797202 CGATCCCCAGCTTACGCATTATGCCTCTCCGATCGGCTC
841 CGATCCCCAGCTTACACATTATGCCTCTCCGAGCGGCTC
*
22797241 AGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
1 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
** * * * * *
22797306 GACCAGATTGAGGGTTATGGTAGCAGTATCGATAGCACGTAAGGGG-GATCAGGTC-GATCCTCG
66 GACCAGACCGAGGGTTATGGTAGCAGGATCGACAGCACG-AAGGGGAGA-CAGGGCTGACCCCCG
* * * * * *
22797369 ACTTGCACATTTTGCCTCTCTGATCGGCTGAGTGCTCGTACGCACACTCGTTTCGTGGGTTGCCT
129 ACTTGCACATTCTGCCTCTCTGACCGGCTGAGTGCCCATACG----CTCATTTCCTGGGTTGCCT
*
22797434 TAGGCAGA-CGAAGTTCATTCCATGTCTAAGCATAAAAAGTTCATTCCCAGTCTAAGATC-AGAC
190 TAGGCAGATCGAA-TTCATTCCATGCCTAAGCATAAAAAGTTCATTCCCAGTCTAAGATCGA-AC
* * * * *
22797497 CGGATCGAGAGTTGCTGC-AGCAGGACCAGCAGCAGGATTGGCAGCACGTAGGG-GGGATCGAGC
253 CGAATCGAGAGTTGCGGCTA-CAGGACCAACAACAGGATCGGCAGCACGTAGGGAGGGATCGAGC
*** ** * * ** *
22797560 CGATCCTTGGCTTGTGCATTCT-CTCTCTCCGGCCAGCTGAGCACCCGCACGCTTGTTTCGTGGC
317 CGATCCCCAGCTTGCACATTCTAC-CTCTCCGGCCAGCTGAACACCCGCACCCTCATTTCCTGGC
*
22797624 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC-CGAGCCGAACCGAGGGTTGTGGCAGC
381 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCGC-AGCCGAACCGAGGGTTGTGGCAGC
* * * *
22797688 AGGA-CTGGT-AGCTAGATCGACAGCACGTAGAGGGGTACCGGGCTGATCCCTGGCTTGCACATT
445 AGGATC-GGTAATC-AGATCGACAGCACGCAGAGGGG-ACCGGGCTGATCCCCGACTTGCACATT
* * * *
22797751 ATGCCTCTCCAGTCAG-CCTCTCCGGTCGGTTGAGCCCCCGCACGCTCGTTTCGTGGGTTGACTT
507 ATGCCTCTCC-GACAGACCGCTCCGGTCGGCTGAGCCCCCGCACGCTCGTTTCATGGGTTGACTT
* * * * *
22797815 AGGCATACGGAGTTCATCCAC-AGTCTAAGCATACGGAGTTCATTCCCAGTTTAAGAT-TATGCA
571 AGGCATACAGAGTTCATCC-CTA-TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGA-CCA
* ** * ** * * * * *
22797878 GACCGAGGGTTGCGGCATTAGGATCGGTAGCATGCAG-GATGGAGCGGGCTGATCCCCGGCTTGC
633 GACCGAGGGTTGCGACAGCAAGATCGACAGCACGCAGAG-GGGACCGAGCCGATCCCCGGCTTGC
* *
22797942 GCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGG
697 GCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGG
* * * * *
22798007 GAGTTCATTCCATGTCTAAGCCCCAGCCAGA-TCGAGGGTTGTGGTAGCGAGACCAGTAGCACGT
762 GAGCTCATTCCATGTCTAAGCCCCAGCCAAACT-GAGGGTTGTGGCAGCGAGACCAGCAGCACGC
* * * *
22798071 AGAGGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTTCGGGCGGCTC
826 AGAGGGGGATCGGGCCGATCCCCAGCTTACACATTATGCCTCTCCGAGCGGCTC
* * * * * *
22798125 AGTGCCCGCATGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAATCTAAGATCG
1 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
*
22798190 GATC-GTACCGAGGGTT
66 GACCAG-ACCGAGGGTT
22798206 GCGGCTGATG
Statistics
Matches: 810, Mismatches: 131, Indels: 45
0.82 0.13 0.05
Matches are distributed among these distances:
881 133 0.16
882 9 0.01
883 9 0.01
884 419 0.52
885 236 0.29
886 4 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (879 bp):
AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
GACCAGACCGAGGGTTATGGTAGCAGGATCGACAGCACGAAGGGGAGACAGGGCTGACCCCCGAC
TTGCACATTCTGCCTCTCTGACCGGCTGAGTGCCCATACGCTCATTTCCTGGGTTGCCTTAGGCA
GATCGAATTCATTCCATGCCTAAGCATAAAAAGTTCATTCCCAGTCTAAGATCGAACCGAATCGA
GAGTTGCGGCTACAGGACCAACAACAGGATCGGCAGCACGTAGGGAGGGATCGAGCCGATCCCCA
GCTTGCACATTCTACCTCTCCGGCCAGCTGAACACCCGCACCCTCATTTCCTGGCTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAACCGCAGCCGAACCGAGGGTTGTGGCAGCAGGATCGGTAA
TCAGATCGACAGCACGCAGAGGGGACCGGGCTGATCCCCGACTTGCACATTATGCCTCTCCGACA
GACCGCTCCGGTCGGCTGAGCCCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTC
ATCCCTATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGACCAGACCGAGGGTTGCGACAG
CAAGATCGACAGCACGCAGAGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACC
GGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAA
GCCCCAGCCAAACTGAGGGTTGTGGCAGCGAGACCAGCAGCACGCAGAGGGGGATCGGGCCGATC
CCCAGCTTACACATTATGCCTCTCCGAGCGGCTC
Found at i:22799087 original size:26 final size:26
Alignment explanation
Indices: 22799058--22799109 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
22799048 GTTGACTTAG
*
22799058 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22799084 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22799110 AATCAGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22799447 original size:159 final size:157
Alignment explanation
Indices: 22799278--22799584 Score: 341
Period size: 157 Copynumber: 1.9 Consensus size: 157
22799268 GCCCCAGTCG
* ** * * *
22799278 GACCGAGGGTTGTGGCAGT-GAGATCGGTAGCATGCAGAAGGGGACCGAGCTGATCCTCGGCTTG
1 GACCGAGGGTTGCGGCAGTAG-GATCGACAGCATGCAG--GGGGACCGAGCCGATCCCCGGCTTA
* * * *
22799342 TGCATTATGCCTCTCCAGCCGGCTCAATGC-CC-GTATGCTCATTTTGTTGGTTGACTTAGGCAT
63 TGCATTATACCTCTCCAGCCGGCT-AA-GCACCTGCATGCTCATTTCGTGGGTTGACTTAGGCAT
**
22799405 ACGAAGTTCATTCCCATTCTAAGATCGGATCA
126 ACGAAGTTCATTCAAATTCTAAGATCGGATCA
* * * *
22799437 GACCGAGGGTTGCGGTAGTAGGATCGACAGCATGTAGGGGGATCGGGCCGATCCCCGGCTTATGC
1 GACCGAGGGTTGCGGCAGTAGGATCGACAGCATGCAGGGGGACCGAGCCGATCCCCGGCTTATGC
* * * * * * *
22799502 ATTCTACCTCTCCGGTCGGCTAAGCACCTGCATGCTCGTTTCGTGGGTTGGCTTAGTCATACGGA
66 ATTATACCTCTCCAGCCGGCTAAGCACCTGCATGCTCATTTCGTGGGTTGACTTAGGCATACGAA
22799567 GTTCATTCAAATTCTAAG
131 GTTCATTCAAATTCTAAG
22799585 CATACAGAGT
Statistics
Matches: 122, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
155 2 0.02
156 4 0.03
157 85 0.70
159 30 0.25
160 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (157 bp):
GACCGAGGGTTGCGGCAGTAGGATCGACAGCATGCAGGGGGACCGAGCCGATCCCCGGCTTATGC
ATTATACCTCTCCAGCCGGCTAAGCACCTGCATGCTCATTTCGTGGGTTGACTTAGGCATACGAA
GTTCATTCAAATTCTAAGATCGGATCA
Found at i:22799557 original size:157 final size:156
Alignment explanation
Indices: 22799084--22799584 Score: 438
Period size: 159 Copynumber: 3.2 Consensus size: 156
22799074 CCCAGTCTAA
* * * * * *
22799084 GCATACGGAGTTCATTCCCAGTCTAAAATCAGATCGGATCGAGTGTTGCGACAGTAAGATCGATA
1 GCATACGGAGTTCATTCCCATTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGTAGGATCGATA
** * ** * ** * *
22799149 GCACCCAGTGGGGACCGGATCGATCCCCGTCTTACACATTCTACCTCTCCGACTGGTTGAGCAGC
66 GCATGCAGAGGGGACCGGGCCGATCCCCGGCTTATGCATTCTACCTCTCCGAC-GGCTAAGCA-C
* *
22799214 CGCACTAC-CGTTTCATGGGTTGGCTTAG
129 CGCA-TGCTCGTTTCGTGGGTTGGCTTAG
* ** *
22799242 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGT-GAGATCG
1 GCATACGGAGTTCATTCCCAT-TCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAGTAG-GATCG
* * * * * * * *
22799304 GTAGCATGCAGAAGGGGACCGAGCTGATCCTCGGCTTGTGCATTATGCCTCTCCAGCCGGCTCAA
63 ATAGCATGCAG-AGGGGACCGGGCCGATCCCCGGCTTATGCATTCTACCTCTCC-GACGGCT-AA
* * * * *
22799369 TGC-CCGTATGCTCATTTTGTTGGTTGACTTAG
125 -GCACCGCATGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
22799401 GCATACGAAGTTCATTCCCATTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCATTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGTAGGATCGATA
* * *
22799466 GCATGTAG-GGGGATCGGGCCGATCCCCGGCTTATGCATTCTACCTCTCCGGTCGGCTAAGCACC
66 GCATGCAGAGGGGACCGGGCCGATCCCCGGCTTATGCATTCTACCTCTCC-GACGGCTAAGCACC
22799530 TGCATGCTCGTTTCGTGGGTTGGCTTAG
130 -GCATGCTCGTTTCGTGGGTTGGCTTAG
* **
22799558 TCATACGGAGTTCATTCAAATTCTAAG
1 GCATACGGAGTTCATTCCCATTCTAAG
22799585 CATACAGAGT
Statistics
Matches: 266, Mismatches: 64, Indels: 27
0.75 0.18 0.08
Matches are distributed among these distances:
155 2 0.01
156 4 0.02
157 88 0.33
158 55 0.21
159 107 0.40
160 8 0.03
161 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCATTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGTAGGATCGATA
GCATGCAGAGGGGACCGGGCCGATCCCCGGCTTATGCATTCTACCTCTCCGACGGCTAAGCACCG
CATGCTCGTTTCGTGGGTTGGCTTAG
Found at i:22799608 original size:26 final size:26
Alignment explanation
Indices: 22799559--22799610 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
22799549 TTGGCTTAGT
* *
22799559 CATACGGAGTTCATTCAAATTCTAAG
1 CATACAGAGTTCATTCAAAGTCTAAG
**
22799585 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCAAAGTCTAAG
22799611 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCAAAGTCTAAG
Found at i:22799968 original size:26 final size:26
Alignment explanation
Indices: 22799938--22799990 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22799928 TTTGACTTAG
22799938 GCATACGGAGTTCA-TCCCAAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
22799964 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22799990 G
1 G
22799991 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22805073 original size:26 final size:26
Alignment explanation
Indices: 22805016--22805073 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
22805006 TATGGGTTGA
*
22805016 CTTAGGCATACAGAGTTCATCCCCAG
1 CTTAAGCATACAGAGTTCATCCCCAG
* *
22805042 -TCTAAGCATACGGAGTTCATTCCCAG
1 CT-TAAGCATACAGAGTTCATCCCCAG
22805068 CTTAAG
1 CTTAAG
22805074 ATCGAATCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 1 0.04
26 25 0.93
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAAGCATACAGAGTTCATCCCCAG
Found at i:22805270 original size:26 final size:26
Alignment explanation
Indices: 22805240--22805292 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22805230 GTTGGCTTAG
22805240 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
22805266 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22805292 G
1 G
22805293 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22805997 original size:26 final size:26
Alignment explanation
Indices: 22805968--22806020 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22805958 GTTGACTTAG
22805968 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
22805994 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22806020 G
1 G
22806021 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22806498 original size:26 final size:26
Alignment explanation
Indices: 22806469--22806521 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22806459 GTTGGCTTAG
*
22806469 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
*
22806495 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
22806521 G
1 G
22806522 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACGTCTAA
Found at i:22806866 original size:26 final size:26
Alignment explanation
Indices: 22806836--22806888 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22806826 GTTGACTTAG
*
22806836 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
22806862 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
22806888 G
1 G
22806889 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:22807374 original size:26 final size:26
Alignment explanation
Indices: 22807338--22807390 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22807328 GTTGGCTTAG
*
22807338 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
22807364 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22807390 G
1 G
22807391 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22808115 original size:26 final size:26
Alignment explanation
Indices: 22808086--22808138 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22808076 GTTGACTTAG
*
22808086 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
22808112 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
22808138 G
1 G
22808139 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:22808377 original size:541 final size:546
Alignment explanation
Indices: 22807275--22808691 Score: 1543
Period size: 541 Copynumber: 2.6 Consensus size: 546
22807265 CGGTCCTCAG
* * * * *
22807275 CTTGTGCATTCTACCTCTCCGGCTGGCTGGGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGC
1 CTTGTGCATTCTACCTCTTCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* *
22807340 ATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCG
66 ATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAACGGACCG
*
22807405 AGGGTTGCAACAACAGGACCAGCAGTAAGATCGACAACACGTAGGGGGGACCGGGCCGATCCCTA
131 AGGGTTGCAACAACAGG--CAGCAGTAAGA-CGACAACACG-AGGGGGGACCAGGCCGATCCCTA
* ** * * *
22807470 ACTTTTACATTCTGCCTCTCCAGCTGGCCTCTCCAGTCGGCTGAGCATCCGCACGCTTGTTTTGT
192 ACTTTTACATTCTGCCTCTCCAGCTGGCCTCTCCACTCGGAAGAGCACCCGCACGCTCGTTTCGT
*
22807535 GGGTTGACTTGGGCATACGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGA
257 GGGTTGACTTAGGCATACGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGA
* **
22807600 TCGAACCAGACCGAGGGTTACGGCAGTAGGATCGATAGCACGCAGGGGGATCGGGCTGATCCCTG
322 TCGAACCAGACCGAGGGTTACGGCAGCAGGATCGATAGCACGCAGGGGGATCGGGCTGATCCCCA
* * * * * *
22807665 GCTTGCACATTCTGCCTCTTCGGCTGACTGAGCGCCTGTATGCCTGTTTCGTGGGTTGGCTTAGG
387 GCTTGCACATTCTGCCTCTCCGGCCGACTGAGCACCAGTATGCCCGTTTCATGGGTTGGCTTAGG
* * *
22807730 CATAGGGAGTTCATTCCATATCTAAGCCCCAGTCGAAAAGAGGGTTGTGGCAGCGGGACCGACAG
452 CATAGGGAGTTCATTCCATATCTAAGCCCCAGCCGAAAAGAGGGTTGTGGCAGCGAGACCGACAA
* * * ** *
22807795 AATGTGGAGAGGGATCGGGCCGATCCTTGG
517 AAAGTAGAGAGGGATCAGGCCGATCCCCGA
* * * * *
22807825 CTTGTGCATTCTGCCTCTTCGACTGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTTGCTTCGGC
1 CTTGTGCATTCTACCTCTTCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * * * *
22807890 ATACAGAGTTCATTCCATGTCTAAGCATACAAAGTTGATTCCCAATCTAAGACCAGAACGGACCG
66 ATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAACGGACCG
* ** * * *
22807955 AGGGTTGCGACAGTAGG-ATCAGT-AG-C-AC-GCA-G-GGGGGGACCAGGCCGATCCTTAACTT
131 AGGGTTGCAACAACAGGCAGCAGTAAGACGACAACACGAGGGGGGACCAGGCCGATCCCTAACTT
* * * * *
22808013 TTGCATTCTGCCTCTTC-GGTCGGCCTGTCCGACT-GGAAGAGCACCCGTACGCTCGTTTCGTGG
196 TTACATTCTGCCTCTCCAGCT-GGCCTCTCC-ACTCGGAAGAGCACCCGCACGCTCGTTTCGTGG
* *
22808076 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGAT
259 GTTGACTTAGGCATAC-GAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGAT
** * * *
22808141 CGAACTGGACCGAGGGTTATGGCAGCAGTG-TCGGTAGCACGTATGGGGGATCGGGCTGATCCCC
323 CGAACCAGACCGAGGGTTACGGCAGCAG-GATCGATAGCACGCA-GGGGGATCGGGCTGATCCCC
* *
22808205 AGCTTG-ATCATTCTGCCTCTCCGGCCGATTGAGCACCAGTATGCCCGTTTTATGGGTTGGCTTA
386 AGCTTGCA-CATTCTGCCTCTCCGGCCGACTGAGCACCAGTATGCCCGTTTCATGGGTTGGCTTA
* * ** * *
22808269 GGCATAGTGAGTTCATTCCATGTCTAAGCCCCAGCC-AGATCGAGGGTTGTGGTAGCGAGACTGA
450 GGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCGA-AAAGAGGGTTGTGGCAGCGAGACCGA
* *
22808333 CAAAAAGTAGAGGGGGATCAGGCTGATCCCCGA
514 CAAAAAGTAGAGAGGGATCAGGCCGATCCCCGA
* * * * * *
22808366 CTTGCGCATTCTACCTC-TCCAGCCGGTTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCATAGG
1 CTTGTGCATTCTACCTCTTCGA-CTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* ** * * * *
22808430 CATATGGAGTTCATTAAATGTCTAAGCTTACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
65 CATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAACGGACC
* *** * * ** * * *
22808495 GAGGGTTACGGTAGCAGGACCAGCAGT-AGTATTGGTAACACGTAGAGGGGACCGGGTCGATCCC
130 GAGGGTTGCAACAACAGG--CAGCAGTAAG-A-CGACAACACG-AGGGGGGACCAGGCCGATCCC
* * ** * * * * ** * *
22808559 CAGCTTGCACATTCTACCTCTCC-GATCGGCCCCTCTAGC-CGGCTGAGCACCCGCACGTTCATT
190 TAACTTTTACATTCTGCCTCTCCAGCT-GGCCTCTCCA-CTCGGAAGAGCACCCGCACGCTCGTT
* * **
22808622 TCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCCGTCTAAGTATACGGAGTTCATTCCCAGTC
253 TCGTGGGTTGACTTAGGCATAC-GAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTC
22808687 TAAGA
317 TAAGA
22808692 GTTTGAGCCA
Statistics
Matches: 719, Mismatches: 127, Indels: 40
0.81 0.14 0.05
Matches are distributed among these distances:
538 2 0.00
539 85 0.12
540 88 0.12
541 268 0.37
542 2 0.00
543 2 0.00
544 8 0.01
546 2 0.00
547 5 0.01
549 2 0.00
550 128 0.18
551 1 0.00
552 126 0.18
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (546 bp):
CTTGTGCATTCTACCTCTTCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAACGGACCG
AGGGTTGCAACAACAGGCAGCAGTAAGACGACAACACGAGGGGGGACCAGGCCGATCCCTAACTT
TTACATTCTGCCTCTCCAGCTGGCCTCTCCACTCGGAAGAGCACCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGA
ACCAGACCGAGGGTTACGGCAGCAGGATCGATAGCACGCAGGGGGATCGGGCTGATCCCCAGCTT
GCACATTCTGCCTCTCCGGCCGACTGAGCACCAGTATGCCCGTTTCATGGGTTGGCTTAGGCATA
GGGAGTTCATTCCATATCTAAGCCCCAGCCGAAAAGAGGGTTGTGGCAGCGAGACCGACAAAAAG
TAGAGAGGGATCAGGCCGATCCCCGA
Found at i:22808676 original size:26 final size:26
Alignment explanation
Indices: 22808640--22808690 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
22808630 TGACTTAGGC
*
22808640 ATACGGAGTTCATCCCCCGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
*
22808666 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
22808691 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:22809392 original size:26 final size:26
Alignment explanation
Indices: 22809362--22809414 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22809352 GTTGACTTAG
22809362 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
22809388 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22809414 G
1 G
22809415 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22809868 original size:152 final size:155
Alignment explanation
Indices: 22809475--22809885 Score: 404
Period size: 159 Copynumber: 2.6 Consensus size: 155
22809465 GACGAGGCTG
* * * * * *
22809475 ATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGTTTG
1 ATCCCCGACTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * * * *
22809540 TG-TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGG
66 -GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGAACCAAGGGTTGTGGCAGAAGG
** *
22809604 ACCGGTAGCACATAGAGAGGGATCGGGCCA
130 ACCGACAGCACACAGAGAGGGA----GCCA
* * * * * * * *
22809634 ATCCCCGACTTGCACA-TGTGCCTTTCCGGCAGGCTCAGCACCCGCACGCTCATTTTGTGGGGTT
1 ATCCCCGACTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGT-GGGTT
* * * * *
22809698 GACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACTAAGGGTTGTGGTAGAA
65 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCGAACCAAGGGTTGTGGCAGAA
*
22809761 GGATCGACAGCACACAGAG-GGGA-CC-
128 GGACCGACAGCACACAGAGAGGGAGCCA
* * * *
22809786 GTCCCCGAGTTGCACATTCTGCCTCTCCGACCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTG
1 ATCCCCGACTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
22809851 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
22809886 TACAGAGTTC
Statistics
Matches: 202, Mismatches: 43, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
151 3 0.01
152 47 0.23
153 35 0.17
158 39 0.19
159 75 0.37
160 3 0.01
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (155 bp):
ATCCCCGACTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGAACCAAGGGTTGTGGCAGAAGGA
CCGACAGCACACAGAGAGGGAGCCA
Found at i:22809893 original size:26 final size:26
Alignment explanation
Indices: 22809857--22809909 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22809847 GTTGGCTTAG
*
22809857 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
22809883 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22809909 G
1 G
22809910 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22810179 original size:171 final size:170
Alignment explanation
Indices: 22809938--22810251 Score: 409
Period size: 171 Copynumber: 1.8 Consensus size: 170
22809928 TTGCAATAGT
* ** * * *
22809938 AGGACCAGTAGCAGGATCGGTAGCATGCAGGGGGGACCAGGCTGATCCCCGAGTTACGTATTTTG
1 AGGACCAGTAACAGGATCAATAGCACGCAGGGGGGACCAGGCTGATCCCCGAGTTACGCATTATG
* * * * *
22810003 CCTCT-CTGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGATTTCA
66 CCTCTCCAG-CCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
*
22810067 T-TCCATGTCTAAGCCCTAACCAGATCGAGGTTTGTGGTAGC
130 TCCCCAT-TCTAAGCCCTAACCAGATCGAGGTTTGTGGTAGC
* * *
22810108 AGGACCGGTAACAGGATCAATAGCACGCAGAGGGGGACTAGGCTGATCCTCG-GCTTACGCATTA
1 AGGACCAGTAACAGGATCAATAGCACGCAG-GGGGGACCAGGCTGATCCCCGAG-TTACGCATTA
* * *
22810172 TGCCTCTCCAGTCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTC
64 TGCCTCTCCAGCCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTC
22810237 ATCCCCATTCTAAGC
129 ATCCCCATTCTAAGC
22810252 ATACGGAGTT
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
170 26 0.21
171 90 0.74
172 6 0.05
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (170 bp):
AGGACCAGTAACAGGATCAATAGCACGCAGGGGGGACCAGGCTGATCCCCGAGTTACGCATTATG
CCTCTCCAGCCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
CCCCATTCTAAGCCCTAACCAGATCGAGGTTTGTGGTAGC
Found at i:22810254 original size:26 final size:26
Alignment explanation
Indices: 22810224--22810274 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
22810214 GTTGACTTAG
* *
22810224 GCATATGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22810250 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
22810275 TGATCGGATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22811135 original size:26 final size:26
Alignment explanation
Indices: 22811098--22811148 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
22811088 TGGCTTAGGC
22811098 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACGGAGTTCATTCCCA-GTCTAAGT
*
22811124 ATACGGATTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
22811149 AGTTTGAACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:22812374 original size:26 final size:26
Alignment explanation
Indices: 22812338--22812390 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22812328 GTTGACTTAG
22812338 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22812364 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22812390 G
1 G
22812391 ATCATACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22812867 original size:26 final size:26
Alignment explanation
Indices: 22812838--22812890 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22812828 GTTGGCTTAG
* *
22812838 GCATACGGAGTTTATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
22812864 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
22812890 G
1 G
22812891 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:22814242 original size:26 final size:26
Alignment explanation
Indices: 22814193--22814245 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22814183 GTTGGCTTAG
*
22814193 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
22814219 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
22814245 G
1 G
22814246 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:22814570 original size:159 final size:159
Alignment explanation
Indices: 22814281--22814615 Score: 415
Period size: 159 Copynumber: 2.1 Consensus size: 159
22814271 AACAGGACCA
** * * * * * *
22814281 GCAGCAGGATCGGTAGCATGCAGGGGTGGATCGGGCTGATCCCCGACTTGCTCATTCTGCTTCTC
1 GCAGCAGGATCGACAGCACGCAGGGGTGGAACGGGCCGATCCCCGACTTGATCATTCTACCTCTC
* * * * * *
22814346 CGGTCAGCTGAGCGCCCACATGCCCATTTCGTGAGTTGGTTTATGCATAGGGAGTTCATTCCATG
66 CGATCAGCTGAGCGCCCACACGCCCATTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATG
*
22814411 TCTACA-CCCCAGCCGGACTGAGGGTTGTG
131 TCTA-AGCCCCAGCCGGACTGAGGGTTATG
* *
22814440 GCAGCGGGATCGACAGCACGCAGAGGG-GGAACGGGCCGATCCCCGGCTT-ATGCATTCTACCTC
1 GCAGCAGGATCGACAGCACGCAG-GGGTGGAACGGGCCGATCCCCGACTTGAT-CATTCTACCTC
* * * * *
22814503 TCCGATCGGCTGAGTGCCCACACGCTCATTTCATGGGTTGGCTTAGGCTTACGGAGTTCATTCCA
64 TCCGATCAGCTGAGCGCCCACACGCCCATTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCA
22814568 TGTCTAAGCCCCAGCCGGACTGAGGGTTATG
129 TGTCTAAGCCCCAGCCGGACTGAGGGTTATG
*
22814599 GTAGCAGGATCGACAGC
1 GCAGCAGGATCGACAGC
22814616 GCGATTAGTA
Statistics
Matches: 149, Mismatches: 24, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
158 2 0.01
159 144 0.97
160 3 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GCAGCAGGATCGACAGCACGCAGGGGTGGAACGGGCCGATCCCCGACTTGATCATTCTACCTCTC
CGATCAGCTGAGCGCCCACACGCCCATTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATG
TCTAAGCCCCAGCCGGACTGAGGGTTATG
Found at i:22814769 original size:26 final size:26
Alignment explanation
Indices: 22814733--22814785 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22814723 GTTGACTTAG
22814733 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
22814759 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
22814785 G
1 G
22814786 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:22815109 original size:26 final size:26
Alignment explanation
Indices: 22815079--22815128 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
22815069 GGCTTAGGCA
22815079 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGGAGTTCATTCCCA-GTCTAAGCG
22815105 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
22815129 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:22815365 original size:355 final size:343
Alignment explanation
Indices: 22814711--22815458 Score: 813
Period size: 355 Copynumber: 2.1 Consensus size: 343
22814701 TGCCCGCTCA
* * *
22814711 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCTAGTCTAAGCATACGGAGTTCATT
1 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATACGGAGTTCATT
* * * *
22814775 CCTAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGTAGGATCGATAGCATGTAGAGGGGACC
65 CCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGTAGGATCGATAGCATGCAGAGGGGACC
* * * * * * * * *
22814840 GAGCCGATCCCCGGCTTGCGCATTCTTCCTCTTCGATCGTCTGAGCACTCACACGCCTATTTTGT
130 GAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGACTGAGCACCCACACGCCCATTTCGT
* *
22814905 GGGTTGGCTTAGGCATAGGGGGCTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTGTGGCA
195 GGATTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTGTGGCA
* * * * * *
22814970 ATGGGACCGGCAGTACGCAAAGGGGGATCAGACGGATCCTCGACCTGCGCATTCTGCCT-TTCCA
260 ACGGGACCGACAGCACGCAAAGAGGGATCAGACGGATCCTCGACCTACGCACTCTGCCTCTT--A
* *
22815034 -GCCGGATGAGCGCCCACACG
323 GGCCGGATAAGCACCCACACG
*
22815054 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCGTACGGAGTTCATTC
1 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
* *
22815119 CCAGTCTAAGATCAGATCGGACCGATGGTTGCGACAGTAGGACCAATAACAGGATAGACA-GCAC
66 CCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGTAGG----AT--C--GATAG-CATG---
* * * * * * *
22815183 ACAGAGGGGATCGGGTCGATCCTCGACTTATGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCA
119 -CAGAGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGACTGAGCACCCACA
* * ** **
22815248 TGCCCGTTTCGTGGATTGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCTGGCCAGACCG
183 CGCCCATTTCGTGGATTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAGACCG
* * * * * *
22815313 AGGGTTGTGGCAACGGGACCGACAGCACGTAAAGAGGGATCGGGTC-GATCCTCGGCTTACGCAC
248 AAGGTTGTGGCAACGGGACCGACAGCACGCAAAGAGGGATC-AGACGGATCCTCGACCTACGCAC
* * * * *
22815377 TCTGTCTCTTAGGTCGGTTAAGCACCCGCGCG
312 TCTGCCTCTTAGGCCGGATAAGCACCCACACG
* *
22815409 CCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
22815459 CCCAGCCGGA
Statistics
Matches: 333, Mismatches: 55, Indels: 22
0.81 0.13 0.05
Matches are distributed among these distances:
343 92 0.28
344 4 0.01
347 2 0.01
349 1 0.00
351 6 0.02
352 2 0.01
354 1 0.00
355 221 0.66
356 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (343 bp):
CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGTAGGATCGATAGCATGCAGAGGGGACCG
AGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGACTGAGCACCCACACGCCCATTTCGTG
GATTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTGTGGCAA
CGGGACCGACAGCACGCAAAGAGGGATCAGACGGATCCTCGACCTACGCACTCTGCCTCTTAGGC
CGGATAAGCACCCACACG
Found at i:22815917 original size:26 final size:26
Alignment explanation
Indices: 22815888--22815940 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22815878 GTTGACTTAG
*
22815888 GCATACGGAATTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGCCTAA
* *
22815914 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAATTCATCCCCAGCCTAA
22815940 G
1 G
22815941 ATCAGAATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGCCTAA
Found at i:22816438 original size:26 final size:26
Alignment explanation
Indices: 22816388--22816440 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22816378 GTTGGCTTAG
*
22816388 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
22816414 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
22816440 G
1 G
22816441 ATCGAATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:22817139 original size:25 final size:26
Alignment explanation
Indices: 22817111--22817162 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
22817101 GTTGACTTAG
* *
22817111 GCATACGGAGTTTA-TCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
22817136 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22817162 G
1 G
22817163 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22817497 original size:159 final size:157
Alignment explanation
Indices: 22817136--22817498 Score: 349
Period size: 159 Copynumber: 2.3 Consensus size: 157
22817126 CCCTGTCTAA
* * * *
22817136 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * * * * *
22817201 GCATGCACGGGGGACTGGGCCGATCCCTGGCTTGCCCATTCTGCCACTCCGACCGGCTGAGTGTC
66 GCACGCAAGGGGGACCGGGCCAATCCCCGACTTACCCATTATCCCACTCCGACCGGCTCAGTGCC
* *
22817266 GCACACTCGTTTCGTGGGTTAGCTTAG
131 CCACACTCGTTTAGTGGGTTAGCTTAG
* * ** * * *
22817293 GCATAGGGAGTTCATT-CTATGTCTAAGCCCCA-ATCGGA-TCGAGGGTTGTGGCAGCGGGA-CT
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACT-GAGGGTTGCGGCAGCAGGATC-
* * * *
22817354 GACAGCACGTAGAGGGGGACCGGGCCAATCCCCGACTTACGCATTATCCCTCTCCGACTGGCTCA
62 GACAGCACGCA-AGGGGGACCGGGCCAATCCCCGACTTACCCATTATCCCACTCCGACCGGCTCA
22817419 GTGCCCCCACACTCGTTTAGTGGGTT-GACTTAG
126 GTG-CCCCACACTCGTTTAGTGGGTTAG-CTTAG
* **
22817452 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAGCAAACTGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
22817499 ACGACAGTAA
Statistics
Matches: 162, Mismatches: 34, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
156 3 0.02
157 52 0.32
158 48 0.30
159 56 0.35
160 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAAGGGGGACCGGGCCAATCCCCGACTTACCCATTATCCCACTCCGACCGGCTCAGTGCC
CCACACTCGTTTAGTGGGTTAGCTTAG
Found at i:22817641 original size:26 final size:25
Alignment explanation
Indices: 22817611--22817662 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
22817601 GTTGGCTTAG
*
22817611 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
22817637 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
22817662 G
1 G
22817663 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:22818186 original size:26 final size:26
Alignment explanation
Indices: 22818144--22818197 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
22818134 TGGGTTGGCT
*
22818144 TAGGCATATGGAATTCATTCCACGTC
1 TAGGCATATGGAATTCATTCCAAGTC
22818170 TAGGCATA-GGAAGTTCATTCCAAGTC
1 TAGGCATATGGAA-TTCATTCCAAGTC
22818196 TA
1 TA
22818198 AGATCGAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 4 0.15
26 22 0.85
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
TAGGCATATGGAATTCATTCCAAGTC
Found at i:22818577 original size:26 final size:26
Alignment explanation
Indices: 22818527--22818579 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22818517 GTTGACTTAG
*
22818527 GCATACAGAGTTCATCCCTGATCTAA
1 GCATACAGAGTTCATCCCAGATCTAA
22818553 GCATACAGAGTTCATTCCCAG-TCTAA
1 GCATACAGAGTTCA-TCCCAGATCTAA
22818579 G
1 G
22818580 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCAGATCTAA
Found at i:22818962 original size:170 final size:170
Alignment explanation
Indices: 22818604--22818970 Score: 441
Period size: 170 Copynumber: 2.2 Consensus size: 170
22818594 AGGGTTTCGA
* * ** * ** * ** *
22818604 CAGCAAGATCAACAGCACACAGAGGGGACCGAACCGATCCTCGGCTTGCACATTTTAC-CTCTCC
1 CAGCAGGATCGACAGCACGTAGAGGGGATCGAGTCGATCCCCGGCTTGTGCATTCT-CTCTCTCC
* * * *
22818668 GACCAGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGT
65 GACCAGCTGAGCACCCGCACGCCCGTTTCGTGGCTTGGCTTAGGCATACGAAGCTCATTCCATGT
22818733 CTAAGCCCCAGCCAAACCGAGGGTTGAGGCAGCAGGACCAG
130 CTAAGCCCCAGCCAAACCGAGGGTTGAGGCAGCAGGACCAG
* * *
22818774 CAGCAGGATTGGCAGCACGTAGGGGGGATCGAGTCGATCCCCGGCTTGTGCATTCTCTCTCTCCG
1 CAGCAGGATCGACAGCACGTAGAGGGGATCGAGTCGATCCCCGGCTTGTGCATTCTCTCTCTCCG
* * ** * *
22818839 ACTAGCTGAGCACCCGCAGGCTTGTTTCGTGGCTTGGCTTAGGTATACGAAGTTCATTCCATGTC
66 ACCAGCTGAGCACCCGCACGCCCGTTTCGTGGCTTGGCTTAGGCATACGAAGCTCATTCCATGTC
* * * *
22818904 TAAGCCCCAGTCGAACCGAGGGTTGTGGCAGCAGGACCGG
131 TAAGCCCCAGCCAAACCGAGGGTTGAGGCAGCAGGACCAG
*
22818944 TAGCTA-GATCGACAGCACGTAGAGGGG
1 CAGC-AGGATCGACAGCACGTAGAGGGG
22818971 TACCGGGCTG
Statistics
Matches: 163, Mismatches: 32, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
169 1 0.01
170 161 0.99
171 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.20
Consensus pattern (170 bp):
CAGCAGGATCGACAGCACGTAGAGGGGATCGAGTCGATCCCCGGCTTGTGCATTCTCTCTCTCCG
ACCAGCTGAGCACCCGCACGCCCGTTTCGTGGCTTGGCTTAGGCATACGAAGCTCATTCCATGTC
TAAGCCCCAGCCAAACCGAGGGTTGAGGCAGCAGGACCAG
Found at i:22818978 original size:538 final size:537
Alignment explanation
Indices: 22818326--22819316 Score: 1391
Period size: 538 Copynumber: 1.8 Consensus size: 537
22818316 CGCACCCTCA
* * * *
22818326 TTTCTTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
1 TTTCGTGGCTTGGCTTAAGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTT
* * *
22818391 GTGGCAGCAGGACCGGTAATCGGATCGACAGCACGCAGAGGGGACCGGGCTGATCCTCGGCTTGG
66 GTGGCAGCAGGACCGGTAATCAGATCGACAGCACGCAGAGGGGACCGGGCTGATCCTCAGCTTGC
* * * * *
22818456 ACATTATGCCTCTTC-GACCGACCTCTCCGGTCGGCTGAGCGCCCGTACGCTTGTTTCATGGGTT
131 ACATTATGCCTCTCCAG-CCGACCTCTCCGGTCGGCTGAGCCCCCGCACGCTCGTTTCATAGGTT
* *
22818520 GACTTAGGCATACAGAGTTCAT-CCCTGATCTAAGCATAC-AGAGTTCATTCCCAGTCTAAGATC
195 GACTTAGGCATACAGAGTTCATCCCCAG-TCTAAGCATACGA-AGATCATTCCCAGTCTAAGATC
* * * *
22818583 GGACCGGACCGAGGGTTTCGACAGCAAGATCAACAGCACACA-GAGGGGACCGAACCGATCCTCG
258 GGACCAGACCGAGGGTTGCGACAGCAAGATCAACAGCACACAGGA-GGGAACGAACCGATCCCCG
* *
22818647 GCTTGCACATTTTACCTCTCCGACC-AGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
322 GCTTGCACATTCTACCTCTCCGACCGA-CTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAG
22818711 GCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGAGGCAGCAGGACCAGCA
386 GCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGAGGCAGCAGGACCAGCA
22818776 GCAGGATTGGCAGCACGTAGGGGGGATCGAGTCGATCCCCGGCTTGTGCATTCTCTCTCTCCGAC
451 GCAGGATTGGCAGCACGTAGGGGGGATCGAGTCGATCCCCGGCTTGTGCATTCTCTCTCTCCGAC
22818841 TAGCTGAGCACCCGCAGGCTTG
516 TAGCTGAGCACCCGCAGGCTTG
* *
22818863 TTTCGTGGCTTGGCTTAGGTATACGAAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTT
1 TTTCGTGGCTTGGCTTAAGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTT
* * *
22818928 GTGGCAGCAGGACCGGT-AGCTAGATCGACAGCACGTAGAGGGGTACCGGGCTGATCCTTAGCTT
66 GTGGCAGCAGGACCGGTAATC-AGATCGACAGCACGCAGAGGGG-ACCGGGCTGATCCTCAGCTT
* * * *
22818992 GCACATTATGCCTCTCCAGTCGGCCTCTCCGGTCGGTTGAGCCCCCGCACGCTCGTTTCGTAGGT
129 GCACATTATGCCTCTCCAGCCGACCTCTCCGGTCGGCTGAGCCCCCGCACGCTCGTTTCATAGGT
*
22819057 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGATCATTCCCAGTCTAAGATCG
194 TGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGATCATTCCCAGTCTAAGATCG
** * ** * ** ** * **
22819122 GAGTAGACCGAGGGTTGCGGCATTAGGATCGGCAGCATGCAGGATGGAACGGGCCGATCCCCGGC
259 GACCAGACCGAGGGTTGCGACAGCAAGATCAACAGCACACAGGAGGGAACGAACCGATCCCCGGC
* * * * *
22819187 TTGCGCATTCTGCCTCTTCGATCGACTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCA
324 TTGCACATTCTACCTCTCCGACCGACTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCA
* * * * * *
22819252 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGTAGCAGGACCAGTAGCA
389 TAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGAGGCAGCAGGACCAGCAGCA
22819317 CATAGAGGGG
Statistics
Matches: 393, Mismatches: 54, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
536 2 0.01
537 96 0.24
538 286 0.73
539 9 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (537 bp):
TTTCGTGGCTTGGCTTAAGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTT
GTGGCAGCAGGACCGGTAATCAGATCGACAGCACGCAGAGGGGACCGGGCTGATCCTCAGCTTGC
ACATTATGCCTCTCCAGCCGACCTCTCCGGTCGGCTGAGCCCCCGCACGCTCGTTTCATAGGTTG
ACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGATCATTCCCAGTCTAAGATCGGA
CCAGACCGAGGGTTGCGACAGCAAGATCAACAGCACACAGGAGGGAACGAACCGATCCCCGGCTT
GCACATTCTACCTCTCCGACCGACTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA
GGGAGCTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGAGGCAGCAGGACCAGCAGCAGG
ATTGGCAGCACGTAGGGGGGATCGAGTCGATCCCCGGCTTGTGCATTCTCTCTCTCCGACTAGCT
GAGCACCCGCAGGCTTG
Found at i:22819105 original size:26 final size:26
Alignment explanation
Indices: 22819065--22819117 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22819055 GTTGACTTAG
* *
22819065 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGATCATCCCCAGTCTAA
*
22819091 GCATACGAAGATCATTCCCAGTCTAA
1 GCATACGAAGATCATCCCCAGTCTAA
22819117 G
1 G
22819118 ATCGGAGTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGATCATCCCCAGTCTAA
Found at i:22820344 original size:26 final size:26
Alignment explanation
Indices: 22820308--22820359 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
22820298 GTTGACTTAG
22820308 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22820334 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22820360 AATCAGATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22820651 original size:159 final size:158
Alignment explanation
Indices: 22820472--22820836 Score: 391
Period size: 157 Copynumber: 2.3 Consensus size: 158
22820462 GCCGCACTCC
* * * *
22820472 CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACTGAGG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGACCGAGG
* ** * * *
22820536 GTTGTGGCAGT-GAGATCGGTAGCACACAGAGGGGGATCGGGCTAATCCTCGGTTTGTGCATTAT
66 GTTGCGGCAGTAG-GATCGACAGCACAC--AGGGGGATCGGGCCAATCCTCGGCTTATGCATTAT
* *
22820600 GCCTCTCCGACCGGCTCAACGC-CC-GTACGCT
128 ACCTCTCCGACCGGCT-AA-GCACCTGCACGCT
* * * * * *
22820631 CATTTCGTTGGTTGACTTAGGCATACGAAGTTCATTCCCA-ATCTAAG-ATCGGATCGGACCGAG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCGGACCGAG
* ** * *
22820694 GGTTGCGGTAGTAGGATCGACAGCATGCAGGGGGATCGGGCCGATCCTCGGCTTATGCATTCTAC
65 GGTTGCGGCAGTAGGATCGACAGCACACAGGGGGATCGGGCCAATCCTCGGCTTATGCATTATAC
**
22820759 CTCTCCGGTCGGCTAAGCACCTGCACGCT
130 CTCTCCGACCGGCTAAGCACCTGCACGCT
* *
22820788 CGTTTCGTGGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAAGCA
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
22820837 TACAGAGTTC
Statistics
Matches: 168, Mismatches: 31, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
155 2 0.01
156 7 0.04
157 86 0.51
158 3 0.02
159 66 0.39
160 4 0.02
ACGTcount: A:0.19, C:0.25, G:0.29, T:0.26
Consensus pattern (158 bp):
CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGACCGAGG
GTTGCGGCAGTAGGATCGACAGCACACAGGGGGATCGGGCCAATCCTCGGCTTATGCATTATACC
TCTCCGACCGGCTAAGCACCTGCACGCT
Found at i:22821408 original size:26 final size:26
Alignment explanation
Indices: 22821358--22821410 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22821348 GTTGGCTTAG
* *
22821358 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
22821384 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
22821410 G
1 G
22821411 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:22828030 original size:26 final size:26
Alignment explanation
Indices: 22828000--22828052 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22827990 GTTGACTTAG
22828000 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
22828026 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
22828052 G
1 G
22828053 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:22828356 original size:343 final size:339
Alignment explanation
Indices: 22827622--22828712 Score: 1184
Period size: 343 Copynumber: 3.2 Consensus size: 339
22827612 GCTGAGCACT
* * *
22827622 CCGCACGATCGTTTCGTGGGTTGACATTAGGCATATAGAGTTCATCCCCAGTCTAAGCATACGGA
1 CCGCACGCTTGTTT-GTGGGTTGAC-TTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGA
* * * ** *
22827687 GTTCATATCCTAATCTAAGGATCGAACCGGACTGAGGGTTTACGGTAGCAGGATCGACCAGCACG
64 GTTCAT-TCCCAGTCTAA-GATCGAACCGGACCGAGGG-TTACGACAGCAGGATCG-GCAGCACG
* * * * *
22827752 CAGCGGGGACATCCGGGCCGATCCCCCGTTTGCGGCATTCCTGCCTCTCCGGTCC-GTTGAGAGC
125 CAG-GGGG-GAT-CAGGCCAATCCCCGGCTTG-GGCATT-CTGCCTCTCCGG-CCGGTTGAGA-C
* * *
22827816 CCGCATGCCCTGCTTT-GTGGTTTGGCTTAGGCATAGGGAGTTTTATTCCATGTCTAAGACCCCA
183 CCGCACGCCC-G-TTTCGTGGGTTGGCTTAGGCATAGGGAG-TTCATTCCATGTCTAAG-CCCCA
* * * *
22827880 GCCCGGACCGAGGGTTGTGGCAGCAAGACTGG-A--A-GC-A---GGATCGGGCTAATCCCACGG
244 G-CCGGACCGAGGGTTGTGGCAGCAGGACTGGCAGCATGCAAGGGGGACCGGGCCAAT-CCTCGG
* * * *
22827937 CTTGCGCGTTATGCCTCTCCGATCGCTTGAGCGC
307 CTTGCGCATTATGCCTCTTCGGTCGC-TCAGCGC
* * * * * *
22827971 CCCCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATATGGAG
1 CCGCACGCTTGTTT-GTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAG
* * *
22828036 TTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAGCAAGATCGGCAACACGCAGGG
65 TTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAGGG
* *
22828101 GGGATCAGGCCAATCCCTGGCTTGGGCATTCTGCCTCTCTGGCCGGTTGAGCACCCGCACGCCCG
130 GGGATCAGGCCAATCCCCGGCTTGGGCATTCTGCCTCTCCGGCCGGTTGAG-ACCCGCACGCCCG
* *
22828166 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAAGGTT
194 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
* * * *
22828231 ATGGCAACAGGACCGGCAGCATGCAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCT
259 GTGGCAGCAGGACTGGCAGCATGCA-AGGGGGACCGGGCCAATCCTCGGCTTGCGCATTATGCCT
*
22828296 CTTCGGTCGGCTCAACGC
323 CTTCGGTC-GCTCAGCGC
*
22828314 CCGCACGCTTGTTCTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATGCGGAG
1 CCGCACGCTTGTT-TGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAG
* * * * *
22828379 TTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGAAGGG
65 TTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAGGG
** * * * * *
22828444 CAGA-CCGAG-CAGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGTGCCCGCACGCC
130 GGGATCAG-GCCA-ATCCCCGGCTTGGGCATTCTGCCTCTCCGGCCGGTTGAG-ACCCGCACGCC
* * *
22828507 CGTTTCGTGGGTTGGCTTAGTCATAGGGAGTTCATTCCGTGTCTAAGCCCCAGCCAGACCGAGGG
192 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
*
22828572 TTGTGGCAGCGGGACTGGCAGCATGCAAAGGGGGACC-GGCCTAATCCTCGGCTTGCGCATTATG
257 TTGTGGCAGCAGGACTGGCAGCATGC-AAGGGGGACCGGGCC-AATCCTCGGCTTGCGCATTATG
* *
22828636 CCTTTTCGGGCAGCTCAGCGC
320 CCTCTTCGGTC-GCTCAGCGC
* * * * *
22828657 CTGCACGCTTGTTT-TGTGTATGGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
1 CCGCACGCTTGTTTGTGGGT-T-GACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
22828713 ATCAGACCAA
Statistics
Matches: 637, Mismatches: 85, Indels: 46
0.83 0.11 0.06
Matches are distributed among these distances:
335 25 0.04
336 6 0.01
337 19 0.03
338 27 0.04
339 29 0.05
340 7 0.01
341 19 0.03
342 12 0.02
343 367 0.58
344 23 0.04
345 14 0.02
346 17 0.03
347 9 0.01
348 41 0.06
349 22 0.03
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (339 bp):
CCGCACGCTTGTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAGGGG
GGATCAGGCCAATCCCCGGCTTGGGCATTCTGCCTCTCCGGCCGGTTGAGACCCGCACGCCCGTT
TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGT
GGCAGCAGGACTGGCAGCATGCAAGGGGGACCGGGCCAATCCTCGGCTTGCGCATTATGCCTCTT
CGGTCGCTCAGCGC
Found at i:22828372 original size:26 final size:26
Alignment explanation
Indices: 22828343--22828395 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22828333 GTTGACTTAG
22828343 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
22828369 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22828395 G
1 G
22828396 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22828879 original size:26 final size:26
Alignment explanation
Indices: 22828843--22828895 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22828833 GTTGGCTTAG
22828843 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
22828869 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22828895 G
1 G
22828896 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22830642 original size:26 final size:26
Alignment explanation
Indices: 22830606--22830658 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22830596 GTTGACTTAG
22830606 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
22830632 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22830658 G
1 G
22830659 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.