Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 224 of 402
Found at i:22830871 original size:343 final size:343
Alignment explanation
Indices: 22830250--22830963 Score: 986
Period size: 343 Copynumber: 2.1 Consensus size: 343
22830240 GCTCATTTCA
**
22830250 TGGGTTGACTTAGGCATACGGAGTTCATCTCTGGGCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCTCCAGGCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
22830315 GATCGAATCGGACCGATGGTTACGACAGTAGGATCGATAGCACACGGGGGGGATCGGACCGATCT
66 GATCGAATCGGACCGAGGGTTACGACAGCAGGATCGATAGCACACAGGGCGAACCGGACCGATCC
* * *
22830380 TCAGCTAGCACATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCAGTTTCATGGGTTGGCTT
131 CCAGCTAGCACATTCTACCTCTCCAGCCGACTGAGCGCCCGCACGCCAGTTTCATGGGTTGGCTT
*
22830445 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGA
196 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGA
* *
22830510 CAGCATGCAGAAGGGGACCGGGCTGAT-CCTCGACGTGCGCATTATGCCTCTTCAGCCGGCTCAG
261 CAGCACGCAGAAGGGGACCGGGCCGATCCCT-GACGTGCGCATTATGCCTCTTCAGCCGGCTCAG
* *
22830574 CTCCCGCACGCTTGCTCCG
325 CGCCCGCACGCTCGCTCCG
*
22830593 TGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCTCCAGGCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * *
22830658 GATCGAATCGGATCGAGGGTTGCGACAGCAGGATCGATAGTACGA-AGGGCGAACC-GAGTCGAT
66 GATCGAATCGGACCGAGGGTTACGACAGCAGGATCGATAGCAC-ACAGGGCGAACCGGA-CCGAT
* ** * * * *
22830721 CCCC-GACTTGTGCATTCTACCTCTCCAGTCGGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGG
129 CCCCAG-CTAGCACATTCTACCTCTCCAGCCGACTGAGCGCCCGCACGCCAGTTTCATGGGTTGG
22830785 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGAC
193 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGAC
* * * * * *
22830850 CGATAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCTGCTC
258 CGACAGCACGCAGAAGGGGACCGGGCCGATCCCTGACGTGCGCATTATGCCTCTTCAGCCGGCTC
* * * **
22830915 AGCGCTCGTACGCTCGTTTTG
323 AGCGCCCGCACGCTCGCTCCG
* *
22830936 TGGGTTAACTTATGCATACGGAGTTCAT
1 TGGGTTGACTTAGGCATACGGAGTTCAT
22830964 TCCCAGCCTA
Statistics
Matches: 325, Mismatches: 42, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
342 3 0.01
343 318 0.98
344 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (343 bp):
TGGGTTGACTTAGGCATACGGAGTTCATCTCCAGGCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCGAATCGGACCGAGGGTTACGACAGCAGGATCGATAGCACACAGGGCGAACCGGACCGATCC
CCAGCTAGCACATTCTACCTCTCCAGCCGACTGAGCGCCCGCACGCCAGTTTCATGGGTTGGCTT
AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGA
CAGCACGCAGAAGGGGACCGGGCCGATCCCTGACGTGCGCATTATGCCTCTTCAGCCGGCTCAGC
GCCCGCACGCTCGCTCCG
Found at i:22830953 original size:159 final size:158
Alignment explanation
Indices: 22830632--22831134 Score: 397
Period size: 158 Copynumber: 3.2 Consensus size: 158
22830622 TCCAGTCTAA
* * * * * * *
22830632 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAATCGGATCGAGGGTTGCGACAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAG-ACCGAACCGAGGGTTGCGGCAGCAGGACCGAC
* * * * * * ** * * ** ** *
22830696 AGTAC-GAAGGGCGAACC-GAGTCGATCCCCGACTTGTGCATTCTACCTCTCCAGTCGGCTGAGC
65 AGCACACAAGGG-GGACCAG-GCCGATCCCTGGCTTGCACATTATGCCTCTCCAACCTACTCAGC
* * * **
22830759 GCCCGCATGCCCGTTTCATGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTAACTTAG
* * * *
22830790 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CC-AGACCGAGGGTTGTGGCAGCGGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCGA-ACCGAGGGTTGCGGCAGCAGGACCG
* * * * * ** *
22830852 ATAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCTGCTCAG
63 ACAGCACACA-AGGGGGACCAGGCCGATCCCTGGCTTGCACATTATGCCTCTCCAACCTACTCAG
* * * *
22830917 CGCTCGTACGCTCGTTTTGTGGGTTAACTTAT
127 CGCCCGCACGCTCGTTTCGTGGGTTAACTTAG
* *** * *
22830949 GCATACGGAGTTCATTCCCAGCCTAAGAGTGGACCGAACTGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGAACCGAGGGTTGCGGCAGCAGGACCGACA
* * * * *
22831014 GCATACATGGGGGACCAGGCTGATCCCTGGCTTGCACATTCTGCCTCTCCAACCTACTGAGCGCC
66 GCACACAAGGGGGACCAGGCCGATCCCTGGCTTGCACATTATGCCTCTCCAACCTACTCAGCGCC
**
22831079 CGCACGCTCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTAACTTAG
22831107 GCATACGGAGTTCATTCCCAGTCTAAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGA
22831135 TTTTGAGCCA
Statistics
Matches: 272, Mismatches: 63, Indels: 20
0.77 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 147 0.54
159 112 0.41
160 10 0.04
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGAACCGAGGGTTGCGGCAGCAGGACCGACA
GCACACAAGGGGGACCAGGCCGATCCCTGGCTTGCACATTATGCCTCTCCAACCTACTCAGCGCC
CGCACGCTCGTTTCGTGGGTTAACTTAG
Found at i:22831845 original size:26 final size:26
Alignment explanation
Indices: 22831815--22831893 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
22831805 GTTGACTTAG
*
22831815 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
22831841 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
22831867 GGATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22831893 G
1 G
22831894 ATCGGACCGG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 46 0.92
27 4 0.08
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22832170 original size:159 final size:158
Alignment explanation
Indices: 22831924--22832364 Score: 390
Period size: 159 Copynumber: 2.8 Consensus size: 158
22831914 ACGATAGCAA
* *
22831924 GATCGGTAGCATGTAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGC
1 GATCGGTAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGC
* * * * **
22831989 TGAGTGCCCGCACGTCTGTTTCATGGGTTG-GTTGAGGCATATGGAGTTCATT-CCATGTCTAAG
66 TCAGCGCCCGCACGTCTATTTCATGGGTTGACTT-AGGCATACAGAGTTCATTCCCA-GTCTAAG
22832052 CCCTAGCAGAACCGAGGGTTGTGGCAGCGG
129 CCCTAGCAGAACCGAGGGTTGTGGCAGCGG
* * * *
22832082 GATCGGTAGCACGCAGAGGGGGACCGGGCCGATCCTCGTCTTGTGCATTAC-GCCTCTCCGACCG
1 GATCGGTAGCACGCAG-GGGGGACCGAGCCGATCCCCGACTTGCGCATT-CTGCCTCTCCGACCG
*
22832146 GCTCAGCGCCCGCATG-CTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
64 GCTCAGCGCCCGCACGTCT-ATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
** * * * * * * * *
22832210 GATCAAACCGGACTGAGGGTTGCGGCAACAG
128 GCCCTAGCAGAACCGAGGGTTGTGGCAGCGG
*** * * * * * * * * *
22832241 GATCTACACCACGTAAGGGGGGATCGGGCTGGT-CCCGGCTTGCGTATTCTGCCTCTCCGACGGG
1 GATCGGTAGCACG-CAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGG
* * * * * * * *
22832305 TTGAGCGCCTGCACG-CTCGTTTCATAGGTTGGCTTAGGCACACGGAGTTCATTCCCAGTC
65 CTCAGCGCCCGCACGTCT-ATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
22832365 AAAGATCAAA
Statistics
Matches: 231, Mismatches: 45, Indels: 14
0.80 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 91 0.39
159 131 0.57
160 8 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GATCGGTAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGC
TCAGCGCCCGCACGTCTATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCC
CTAGCAGAACCGAGGGTTGTGGCAGCGG
Found at i:22832541 original size:26 final size:26
Alignment explanation
Indices: 22832512--22832564 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22832502 GTTGACTTAG
22832512 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* * *
22832538 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
22832564 G
1 G
22832565 ATTAGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:22833176 original size:673 final size:672
Alignment explanation
Indices: 22831841--22834320 Score: 2707
Period size: 673 Copynumber: 3.7 Consensus size: 672
22831831 CCTAGTCTAA
* * * * *
22831841 GCATACGAAGTTCATTCCCAGTCTAAGGATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGA-
1 GCATACGGAGTTCATCCCCAGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * * * * * * *
22831905 CGAAGGGTTACGATAGCAAGATCGGTAGCATGTAGGGGGGACCGAGCCGATCC-CCGACTTGCGC
66 CG-AGGGTTGCGACAGCAGGATCGGCAGCACGCAGGGGGGATCGGGCCGATCCTCAG-CTTGCGC
* * *
22831969 ATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACGTCTGTTTCATGGGTTGGTTGAGGCATATGGA
129 ATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCTGTTTCATGGGTTGGTTGAGGCATAGGGA
* * * * **
22832034 GTTCATTCCATGTCTAAGCCCTAGCAGAACCGAGGGTTGTGGCAGCGGGAT-CGGTAGCACGCAG
194 GTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACGGGATCCGACAGCACGCAG
* * * * * * *
22832098 AGGGGGACCGGGCCGATCCTCGTCTTGTGCATTACGCCTC-TCCGACCGGCTCAGCGCCCGCATG
259 AAGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGATCGGCTCAGCGCCCGCACG
* * *
22832162 CTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAG
324 CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAG
* * * * *
22832227 GGTTGCGGCAACAGGATCTACACCACGTAAGGGGGGATCGGGCTGGTCCC-GGCTTGCGTATTCT
389 GGTTGCGGCAACAGGATCTACAGCACGTAAGGGGGGAACGGGCCGGTCCCTGACTTGCGCATTCT
* *
22832291 GCCTCTCCGACGGGTTGAGCGCCTGCACGCTCGTTTCATAGGTTGGCTTAGGCACACGGAGTTCA
454 GCCTCTCCGATGGGTTGAGCGCCTGCACGCTCATTTCATAGGTTGGCTTAGGCACACGGAGTTCA
* *
22832356 TTCCCAGTCAAAGATCAAATTGGACCGAGGGTTACGGTAGTAGGACCAGCAGTAGGATTGACAGC
519 TTCCCAGTCAAAGATC-AATTGGACCGAGGGTTACGGTAGCAGGACCAGCAGCAGGATTGACAGC
* * * * *
22832421 ACGCAGGGGGGACCGGACTGATCCCCGGCTTGCGCATTCTGCCTCTCCAACCAGTTGAGCACCCG
583 ACGCAGGGGGGACCGAACCGAT-CCCAGCTTGCGCATTCTGCCTCTCCAACCGGCTGAGCACCCG
* *
22832486 CACACTCGTTCCGTGGGTTGACTTAG
647 CACGCTCGTTTCGTGGGTTGACTTAG
* * * **
22832512 GCATACGGAGTTCATCCCCAGCCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTAGATTGGAC
1 GCATACGGAGTTCATCCCCAGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * *
22832577 CGAGGGTTGCGACAGCAGGATCGGTAGCACGCAGGGGGGATCGGGTCGATCCTCAGCTTACGCAT
66 CGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTGCGCAT
* * * * * *
22832642 TCTGCCTCTCCGACTGGCTGAGCGCCCGTACGCCTATTTCACGGGTTGGTTGAGGCATACGAAGT
131 TCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCTGTTTCATGGGTTGGTTGAGGCATAGGGAGT
* * * * ** *
22832707 TCATTCCATATCTAAGCCCTAGCCGGACCGAGGGTTGTGGTAACGGGATCGGGTAGCACGCAGAG
196 TCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACGGGATCCGACAGCACGCAGAA
* * * *
22832772 GGGGACCGGGCCGATCCTCGGCTTGTGCATTATGCCTTTTCGGCT-GGCTCAGCGCCCGCACACT
261 GGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGATCGGCTCAGCGCCCGCACGCT
* * * * ** *
22832836 CGTTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCGGATCGGATTGAAGG
326 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGG
* * * *
22832901 TTGCGGCAACAGGATCTACAGCACGCAGGGGGGGAATGGGTCGGTCCCTGACTTGCGCATTCTGC
391 TTGCGGCAACAGGATCTACAGCACGTAAGGGGGGAACGGGCCGGTCCCTGACTTGCGCATTCTGC
* * ** *
22832966 CTCTCCGGTGGGCTGAGCGCCTGCACGCTCATTTTGTGGGTTGGCTTAGGCACACGGAGTTCATT
456 CTCTCCGATGGGTTGAGCGCCTGCACGCTCATTTCATAGGTTGGCTTAGGCACACGGAGTTCATT
* * * *
22833031 CCCAGTCAAAGATCGAATTGGATCGAGGGTTACGGCACCAGGACCAACAGCAGGATTGACAGCAC
521 CCCAGTCAAAGATC-AATTGGACCGAGGGTTACGGTAGCAGGACCAGCAGCAGGATTGACAGCAC
* * *
22833096 GCAGGGGGGACCGAACCGATCCCTAGTTTGCGCATTCTGCCTCTCCAACCGGCTAAGCACCTGCA
585 GCAGGGGGGACCGAACCGATCCC-AGCTTGCGCATTCTGCCTCTCCAACCGGCTGAGCACCCGCA
* *
22833161 CGCTCATTTCGTGGGTTGACTTTG
649 CGCTCGTTTCGTGGGTTGACTTAG
* * *
22833185 GCATACGGAGTTCATCCCCAGCCTAAGCATACGGAGTTCATTCCCAGTATAAAATCAGACCGGAC
1 GCATACGGAGTTCATCCCCAGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * * *
22833250 CGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGGGGGGATCGGG-CGATCCTCAGCTTGTGTAT
66 CGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTGCGCAT
* * * * * *
22833314 TCTGCCTCTTCGGCCGGCTGAGCGCCCGCACATCC-GTTTCGTGGGTTAGCTT-AGCCATAGGGA
131 TCTGCCTCTCCGACCGGCTGAGCGCCCGCAC-GCCTGTTTCATGGGTT-GGTTGAGGCATAGGGA
* * * *
22833377 GTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGC-AC-GAAACCGACAGCACGTAG
194 GTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACGGGATCCGACAGCACGCAG
*** * * * * *
22833440 AAGGGGACCGATTCGATCCTCGACTTGCGCATTATGCCTC-TCCGATCAGCTCAGTGCCCGCATG
259 AAGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGATCGGCTCAGCGCCCGCACG
* ** *
22833504 CTCGTTTCATGGGTTGACTTAGGCATGTGGAGTTCATTCCCAGTCGAAGATCGAACCGGACCGAG
324 CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAG
* * * * * * * *
22833569 GGGTGCGGCAGCAGGATCGATAGCAC-AAAAGGGGGACCGGCCCGGTCCCT-AGCTTGCGCATTC
389 GGTTGCGGCAACAGGATCTACAGCACGTAAGGGGGGAACGGGCCGGTCCCTGA-CTTGCGCATTC
* *** * ** * * **** * * **
22833632 TGCCTCTCACGCTCATTTTGTG-GGTTGCTTAGGCATACGGAGTTCATTCCATGTC-TAAGCGTA
453 TGCCTCTC-CGAT-GGGTTGAGCGCCTGC--ACGC-T-C--ATTTCATAGGTTGGCTTAGGCACA
* * * * * * * *
22833695 CGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCAAAGGTTGCGGTAGCAAGACCAGCAACAGG
510 CGGAGTTCATTCCCAGTCAAAGATCA-ATTGGACCGAGGGTTACGGTAGCAGGACCAGCAGCAGG
* * * * ** * ** *
22833760 ATCGGCAGCACACAGGGAGGACCGAGTCGATCCCCGACTTGTACATTCTGCCTCTCCAATCGGCT
574 ATTGACAGCACGCAGGGGGGACCGAACCGATCCCAG-CTTGCGCATTCTGCCTCTCCAACCGGCT
* ** *
22833825 GGGTGCCCGCACGCTCGTTTCATGGGTTGACTTAG
638 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** ** *
22833860 GTATACGGAGTTCATCCCCAATCTAAGCATACGAAGTTCATTCTTAGTCTAAGATCAGACCGGAT
1 GCATACGGAGTTCATCCCCAGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* *
22833925 C-AGGGGTTGCGATAGCAGGATCGGCAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCA
66 CGA-GGGTTGCGACAGCAGGATCGGCAGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTGCGCA
* * * * *
22833989 TTCTGCCTCTTC-AGTCGGTTGAGCGCCCGCACGCCCGTTTCATGGGTTGGTTTAGGCATAGGGA
130 TTCTGCCTCTCCGA-CCGGCTGAGCGCCCGCACGCCTGTTTCATGGGTTGGTTGAGGCATAGGGA
* * * *
22834053 GTTCATTCCATGTCCAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGA-CCGACAGCACACAG
194 GTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACGGGATCCGACAGCACGCAG
* * * * * *
22834117 AAGGGGATCGGGTCGATCC-CTAGCTTGCGCATTATACCTCTTC-GATCGGTTCAGCACCCGCAC
259 AAGGGGACCGGGCCGATCCTC-GGCTTGCGCATTATGCCTCTTCGGATCGGCTCAGCGCCCGCAC
* * **
22834180 GCTCATTTTATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAAACCGA
323 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGA
* * * * * * * *
22834245 GGGTTGTGGCAGCAGGATCAACAGCACGTAGGGGGGGACCGGGCCGATCCCTGGCTTGTGCATTC
388 GGGTTGCGGCAACAGGATCTACAGCACGTAAGGGGGGAACGGGCCGGTCCCTGACTTGCGCATTC
*
22834310 TACCTCTCCGA
453 TGCCTCTCCGA
22834321 CCGACTGAGC
Statistics
Matches: 1512, Mismatches: 266, Indels: 56
0.82 0.15 0.03
Matches are distributed among these distances:
668 1 0.00
669 40 0.03
670 143 0.09
671 210 0.14
672 273 0.18
673 312 0.21
674 4 0.00
675 235 0.16
676 112 0.07
677 142 0.09
678 40 0.03
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (672 bp):
GCATACGGAGTTCATCCCCAGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAC
CGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTGCGCAT
TCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCTGTTTCATGGGTTGGTTGAGGCATAGGGAGT
TCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACGGGATCCGACAGCACGCAGAA
GGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGATCGGCTCAGCGCCCGCACGCT
CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGG
TTGCGGCAACAGGATCTACAGCACGTAAGGGGGGAACGGGCCGGTCCCTGACTTGCGCATTCTGC
CTCTCCGATGGGTTGAGCGCCTGCACGCTCATTTCATAGGTTGGCTTAGGCACACGGAGTTCATT
CCCAGTCAAAGATCAATTGGACCGAGGGTTACGGTAGCAGGACCAGCAGCAGGATTGACAGCACG
CAGGGGGGACCGAACCGATCCCAGCTTGCGCATTCTGCCTCTCCAACCGGCTGAGCACCCGCACG
CTCGTTTCGTGGGTTGACTTAG
Found at i:22833703 original size:26 final size:26
Alignment explanation
Indices: 22833667--22833716 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
22833657 TGCTTAGGCA
22833667 TACGGAGTTCATTCC-ATGTCTAAGCG
1 TACGGAGTTCATTCCTA-GTCTAAGCG
22833693 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCTAGTCTAAG
22833717 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCTAGTCTAAGCG
Found at i:22834177 original size:159 final size:159
Alignment explanation
Indices: 22833960--22834389 Score: 468
Period size: 159 Copynumber: 2.7 Consensus size: 159
22833950 AGCACGCAGG
* * * *
22833960 GGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTC-AGTCGGTTGAGCGCCCGCACGCC
1 GGGGATCGGGCCGATCCCTAGCTTGCGCATTCTACCTCTTCGA-TCGGTTGAGCACCCGCACGCT
* * * ** **
22834024 CGTTTCATGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCCAAGCCCCAGTCGGACCGAGGG
65 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGAGGG
* *
22834089 TTGTGGCAGCGGGACCGACAGCACACAGAA
130 TTGTGGCAGCAGGACCAACAGCACACAGAA
* * *
22834119 GGGGATCGGGTCGATCCCTAGCTTGCGCATTATACCTCTTCGATCGGTTCAGCACCCGCACGCTC
1 GGGGATCGGGCCGATCCCTAGCTTGCGCATTCTACCTCTTCGATCGGTTGAGCACCCGCACGCTC
* * * * ** *
22834184 ATTTTATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCAAACCGAGGG
66 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCAAACCGAGGG
* ** **
22834248 TTGTGGCAGCAGGATCAACAGCACGTAGGG
130 TTGTGGCAGCAGGACCAACAGCACACAGAA
* * * * * ** * *
22834278 GGGGACCGGGCCGATCCCTGGCTTGTGCATTCTACCTCTCCGACCGACTGAGCACCCGTACGCTT
1 GGGGATCGGGCCGATCCCTAGCTTGCGCATTCTACCTCTTCGATCGGTTGAGCACCCGCACGCTC
* **
22834343 GTTTCATGGGTTGGCTTAGGCGTACGTTGTTCATTCCATGTCTAAGC
66 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
22834390 ATACGGAGTT
Statistics
Matches: 220, Mismatches: 48, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
158 3 0.01
159 213 0.97
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
GGGGATCGGGCCGATCCCTAGCTTGCGCATTCTACCTCTTCGATCGGTTGAGCACCCGCACGCTC
GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGAGGGT
TGTGGCAGCAGGACCAACAGCACACAGAA
Found at i:22835870 original size:26 final size:26
Alignment explanation
Indices: 22835834--22835912 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
22835824 GTTGACTTAG
22835834 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22835860 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
22835886 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22835912 G
1 G
22835913 ATCGGACCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22843143 original size:26 final size:26
Alignment explanation
Indices: 22843065--22843134 Score: 140
Period size: 26 Copynumber: 2.7 Consensus size: 26
22843055 GTTGGCTTAG
22843065 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
22843091 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
22843117 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
22843135 CAATCTAAGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:22843500 original size:26 final size:26
Alignment explanation
Indices: 22843471--22843523 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22843461 GTTGACTTAG
*
22843471 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
*
22843497 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
22843523 G
1 G
22843524 ATCATATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:22843817 original size:159 final size:160
Alignment explanation
Indices: 22843497--22844001 Score: 434
Period size: 159 Copynumber: 3.2 Consensus size: 160
22843487 CCCAGTCTAA
* * * ** * * *
22843497 GCATACGGAGTTAATTCCCA-GTCTAAG-ATCATATTGGACTGAGGGTTGCGGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * *** * * * * ** *
22843560 CAGCACGCAGTGGG-GATTGAGCCGATCCCTGGCTTACGCATTCTACCTCTCC-AGCCGGCTGAG
65 CAGCACGCAGGGGGAGACTGGGCCGATCCCCAACTTGCACATTATGCCTCTCCGA-CCGGCCCAA
* * *
22843623 CGCCCGCACGCCCGTTTCATGGGTTGACTTAG
129 CACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * ** *
22843655 GCATAGGGAGTTCATTCTATGTCTAAGCCCCAG-CTGGACTGAGGGTTGTGGTAGTGGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * **
22843719 AGCACGCAGAGGGG-GA-TCGGGCCGATCCTCAACTTGCACATTATGCCTCTTCGGTCGGCCCAA
66 AGCACGCAG-GGGGAGACT-GGGCCGATCCCCAACTTGCACATTATGCCTCTCCGACCGGCCCAA
22843782 CACCCGCACGCTCGTTTCGTGGGTTGACTTAG
129 CACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
22843814 GCATACGGAGTTCATTCCCA-ATCTAAG-ATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * *** *
22843877 CAGCACGTAGGGGGAGACTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGTTGAGC
65 CAGCACGCAGGGGGAGACTGGGCCGATCCCCAACTTGCACATTATGCCTCTCCGACCGGCCCAAC
* * * *
22843942 GCCCGCACGATCGTTTCGTTGGTTGGCTTAG
130 ACCCGCACGCTCGTTTCGTGGGTTGACTTAG
22843973 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
22844002 TACAGAGTTC
Statistics
Matches: 277, Mismatches: 59, Indels: 20
0.78 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 66 0.24
159 205 0.74
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
AGCACGCAGGGGGAGACTGGGCCGATCCCCAACTTGCACATTATGCCTCTCCGACCGGCCCAACA
CCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:22844009 original size:26 final size:26
Alignment explanation
Indices: 22843973--22844025 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22843963 GTTGGCTTAG
*
22843973 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
22843999 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22844025 G
1 G
22844026 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22844737 original size:26 final size:26
Alignment explanation
Indices: 22844707--22844756 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
22844697 GTTGACTTAG
*
22844707 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
22844733 GCATACGGAGTTCATTCCTAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
22844757 CAGATCTGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22846434 original size:26 final size:26
Alignment explanation
Indices: 22846398--22846450 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22846388 GTTGACTTAG
22846398 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
22846424 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22846450 G
1 G
22846451 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22846795 original size:26 final size:26
Alignment explanation
Indices: 22846766--22846818 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22846756 GTTGACTTAG
*
22846766 GCATACGGAGGTCATCCCCAGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
* * *
22846792 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
22846818 G
1 G
22846819 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGGTCATCCCCAGTCTAA
Found at i:22847255 original size:158 final size:158
Alignment explanation
Indices: 22846792--22847795 Score: 543
Period size: 158 Copynumber: 6.1 Consensus size: 158
22846782 CCCAGTCTAA
* * * *
22846792 GCATATGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGTAGCAGGATCGACA
* ** ** * * *
22846857 GCATGCAGGGGGGATCGAACCGATCCCTGGCTTACGCATTCTGCCACTCCGGCCGGCTGAACGA-
66 GCATGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC-AC
** * *
22846921 CTGTACGCCCGTTTCGTGGGTTGGCTTAG
130 CCATACGCTCATTTCGTGGGTTGGCTTAG
* * * ** * * * * * * *
22846950 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCATCGAAACTAAGGGTTGTGGCAGCGGGACCGG
1 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGATCG-GACCAAGGGTTGCGGTAGCAGGATCGA
* * * * * *
22847013 CAGCACGCAGAGGGGGACCGGGTCGATCCCCAGCTTGCGCATTATGCTTCTCCGGTCGGCTCAGC
64 CAGCATGCAG-GGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC
* * *
22847078 GCCCGA-ACGCTCATTTCGTGGTTTGACTTAG
128 ACCC-ATACGCTCATTTCGTGGGTTGGCTTAG
* * **
22847109 GTATACGAAGTTCATTCCCAGCCTAAGATTGGATCGGACCAAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGTAGCAGGATCGACA
* * *
22847174 GCATGTAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGCACC
66 GCATGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACC
* *
22847239 CATACACTCATTTCGTGGGTTGGCTTAC
131 CATACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * *
22847267 ACATACGGAGTTCATTCCTAGACTAAGATCAGACCAGACCAAGGCTGGCGGTAGTAGGACCAGTA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCAA-----G-GGT--T--G--CGGTA
* * * * * * *
22847332 GCAGGATCGACAGTACGCAGGGGGGACCGGGTCGATCCCC-GACTTACGCATTTTACCTCTCCAG
54 GCAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCCAG-CTTGCGCATTCTGCCTCTCCGG
* ** * * *
22847396 CCGGCTGAGCGCCCGCACGCTCGTATCGTGGGTTGACTTAG
118 CCGGCTGAGCACCCATACGCTCATTTCGTGGGTTGGCTTAG
* * * *** * *
22847437 GCATACGGAGTTCATACCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAAAT-CGG-
1 GCATACGAAGTTCATTCCCAGTCTAAG-AT-CAGA--TC-GGACCA----AGGGT----TGCGGT
* * * * *
22847500 ATCGAGGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGATCGGGCCAATCCCCGGCTTGCGCA
53 AGC-A-GGAT-CGACAGC---AT-----GCA-G--GGGGGACCGGGCCGATCCCCAGCTTGCGCA
* * ** ** * * * * *
22847565 TTCTGCCTCTCCGGTCGGTTGAGTGCCCGCACGCCCGTTTCGTGAGTTAGCTTAC
104 TTCTGCCTCTCCGGCCGGCTGAGCACCCATACGCTCATTTCGTGGGTTGGCTTAG
* * ** * * * * * *
22847620 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGATCGAGGGTTGTGGCAGCGGGATCGA
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCAAGGGTTGCGGTAGCAGGATCGA
* * *
22847683 CAGCATGCAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTTTCCGGCC-GCTGAGC
64 CAGCATGCAG-GGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC
* ** *
22847747 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 ACCCATACGCTCATTTCGTGGGTTGGCTTAG
22847778 GCATACGAAGTTCATTCC
1 GCATACGAAGTTCATTCC
22847796 ATCTCTAAGC
Statistics
Matches: 640, Mismatches: 155, Indels: 101
0.71 0.17 0.11
Matches are distributed among these distances:
157 8 0.01
158 198 0.31
159 153 0.24
160 8 0.01
161 3 0.00
163 1 0.00
164 3 0.00
166 3 0.00
168 1 0.00
169 10 0.02
170 119 0.19
171 7 0.01
172 11 0.02
173 2 0.00
174 4 0.01
175 6 0.01
178 1 0.00
179 3 0.00
180 3 0.00
181 1 0.00
182 5 0.01
183 89 0.14
184 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGTAGCAGGATCGACA
GCATGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACC
CATACGCTCATTTCGTGGGTTGGCTTAG
Found at i:22847815 original size:26 final size:26
Alignment explanation
Indices: 22847778--22847830 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22847768 GTTGGCTTAG
22847778 GCATACGAAGTTCATTCCATCTCTAA
1 GCATACGAAGTTCATTCCATCTCTAA
* * *
22847804 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATTCCATCTCTAA
22847830 G
1 G
22847831 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATCTCTAA
Found at i:22848529 original size:26 final size:26
Alignment explanation
Indices: 22848500--22848552 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22848490 GTTGACTTAG
* *
22848500 GCATGCAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
22848526 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22848552 G
1 G
22848553 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22848886 original size:159 final size:157
Alignment explanation
Indices: 22848526--22849023 Score: 428
Period size: 159 Copynumber: 3.1 Consensus size: 157
22848516 CCCAGTCTAA
*
22848526 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAGGATCGACA
** * * *
22848591 GCACGTAGGGTGGACCGAACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCC
65 GCACAAAGAGTGGACCGAACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTAAGCGCC
* *
22848656 CGTACGCCTGTTTCATGGGTTGGCTTAG
130 CGCACGCCTGTTTCATGGGTTGACTTAG
* * ** * **
22848684 GCATAGGGAGTTCAGTCCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGTAGTGGGA-CTGA
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGATCAGACCGAGGGTTGCGGTAGCAGGATC-GA
** * * * *
22848747 CAGTACACAAAGAG-GGACCGGGCTGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGACTCAG
63 CAG--CACAAAGAGTGGACCGAACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTAAG
* * *
22848811 TGCCCGCACG-ATCGTTTCGTGGGTTGACTTAG
126 CGCCCGCACGCCT-GTTTCATGGGTTGACTTAG
* * * ***
22848843 GCATACGGAGTTCATTACCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACCGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAGGATCGACA
*** * * * ** * * * * *
22848908 GCATGCAGGGGGGATCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
65 GCACAAAGAGTGGACCGAACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTAAGCGCC
* *
22848973 CGGACGCTTGCTCGTTTCATGGGTTGGCTTAG
130 CGCACGC---CT-GTTTCATGGGTTGACTTAG
* **
22849005 ACATACATAGTTCATTCCA
1 GCATACGGAGTTCATTCCA
22849024 TATCGAAGCA
Statistics
Matches: 270, Mismatches: 56, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 9 0.03
158 102 0.38
159 114 0.42
160 10 0.04
161 3 0.01
162 32 0.12
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAGGATCGACAG
CACAAAGAGTGGACCGAACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTAAGCGCCC
GCACGCCTGTTTCATGGGTTGACTTAG
Found at i:22849391 original size:26 final size:26
Alignment explanation
Indices: 22849361--22849413 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22849351 GTTGACTTAG
22849361 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
22849387 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22849413 G
1 G
22849414 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22849751 original size:159 final size:156
Alignment explanation
Indices: 22849454--22849860 Score: 474
Period size: 159 Copynumber: 2.6 Consensus size: 156
22849444 GATTGACAGC
* * * * * *
22849454 ACGCATTCTGCCTTTCCGATCGGTCGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA
1 ACGCATTATGCCTCTCCAACCGGTC-AGCACCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATA
* ** *** * **
22849519 GGGAGTTCATTCCATGTCTAAGCCCCAACCGGATTGAGGGTTGTGGCAGCGAGACCGGTAGCACA
65 CGGAGTTCATTCCA-GTCTAAG-ATCAACCGGAACAAGGGTTGCGGCAGCGAGACCGACAGCACA
22849584 CAGAGGGGGACCAGGCCGATCCCCGACTT
128 CAGAGGGGGACCAGGCCGATCCCCGACTT
* * *
22849613 ACGCATTATGCCTCTCCAACCGGTTCAGCACCCGCACGATCATTTTGTGGGTTGACTTATGCATA
1 ACGCATTATGCCTCTCCAACCGG-TCAGCACCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATA
*
22849678 CGGAGTTCATTCCTAGTCTAAGATCAGACCGGAACAAGGGTTGCGGCAGC-AGGATCGACAGCAC
65 CGGAGTTCATTCC-AGTCTAAGATCA-ACCGGAACAAGGGTTGCGGCAGCGA-GACCGACAGCAC
* * *
22849742 GCAGGGGGGGACCAGGCCGATCCCCGGCTT
127 ACAGAGGGGGACCAGGCCGATCCCCGACTT
** * * *
22849772 GTGCATTATGCCTCTCCAGCCGGCTGAGCACCCGCACGCTCATTTTGTAGGTTGGCTTAGGCATA
1 ACGCATTATGCCTCTCCAACCGG-TCAGCACCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATA
*
22849837 CGGAGTTCATTCCCAATCTAAGAT
65 CGGAGTTCATT-CCAGTCTAAGAT
22849861 TTTGAGCGAC
Statistics
Matches: 211, Mismatches: 32, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
158 3 0.01
159 203 0.96
160 5 0.02
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (156 bp):
ACGCATTATGCCTCTCCAACCGGTCAGCACCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATAC
GGAGTTCATTCCAGTCTAAGATCAACCGGAACAAGGGTTGCGGCAGCGAGACCGACAGCACACAG
AGGGGGACCAGGCCGATCCCCGACTT
Found at i:22850560 original size:26 final size:26
Alignment explanation
Indices: 22850530--22850582 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22850520 GTTGACTTAG
22850530 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
* *
22850556 GCATATGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22850582 G
1 G
22850583 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22851090 original size:159 final size:158
Alignment explanation
Indices: 22850611--22851090 Score: 460
Period size: 159 Copynumber: 3.0 Consensus size: 158
22850601 TTGTGAAAGC
* * * * * ** * * *
22850611 AGGATCGACAACACGTAG-GAGGGACCGGACCAATCCCTAACTTACGCATTCTGCCTTTTCGACC
1 AGGATCGACAGCACATAGAGAGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTTCGACC
* * * * *
22850675 GGCTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGCCATAAGGAGTTCATTCCATGTCTAA
66 GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
22850740 GCCCCAGTCGGACCGAGGGTTGTGGTAGC
131 GCCCCAG-CCGACCGAGGGTTGTGGCAGT
* * * * * * * *
22850769 GGGATCGGCAGCACGTAGAGAGGGATCGGGTCGATCCCCGGCTTGCACATTATGCCTCTTCGGCT
1 AGGATCGACAGCACATAGAGAGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTTCGACC
* * * * * * * *
22850834 AGCTCAACGCCTGAACGCTCATTTCATGGGTTGACTTAAGCATACAGAGTTCATTCCCA-GTCTA
66 GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
* ** * * **
22850898 AGATCGGATCAGACCGAGGGTTGCAGCAGT
130 AG-CCCCAGCCGACCGAGGGTTGTGGCAGT
* * * * * *
22850928 AGGATCGACAGCACATAGGGGGGGATTGGGCCGATCCCTGACTTGTACATTCTGCCTCTCCGACC
1 AGGATCGACAGCACATAGAGAGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTTCGACC
* *
22850993 GGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
66 GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
22851058 GCCCCAGCCGTACCGAGGGTTGTGGCAAT
131 GCCCCAGCCG-ACCGAGGGTTGTGGCAGT
22851087 AGGA
1 AGGA
22851091 CCGGCAGCGG
Statistics
Matches: 247, Mismatches: 70, Indels: 9
0.76 0.21 0.03
Matches are distributed among these distances:
158 22 0.09
159 220 0.89
160 5 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
AGGATCGACAGCACATAGAGAGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTTCGACC
GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCCCCAGCCGACCGAGGGTTGTGGCAGT
Found at i:22851253 original size:26 final size:26
Alignment explanation
Indices: 22851224--22851294 Score: 115
Period size: 26 Copynumber: 2.7 Consensus size: 26
22851214 AGGCATACAA
*
22851224 AGTTCATCCCCAGTCTAAGCATATGG
1 AGTTCATCCCCAGTCTAAGCATACGG
*
22851250 AGTTCATCCCCAGTCTAAACATACGG
1 AGTTCATCCCCAGTCTAAGCATACGG
*
22851276 AGTTCATTCCCAGTCTAAG
1 AGTTCATCCCCAGTCTAAG
22851295 ATTAGATCAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (26 bp):
AGTTCATCCCCAGTCTAAGCATACGG
Found at i:22852252 original size:153 final size:152
Alignment explanation
Indices: 22852016--22852305 Score: 336
Period size: 153 Copynumber: 1.9 Consensus size: 152
22852006 CGGATCGGAT
*
22852016 CGAGGGTTGTGATAGTAGGATCGGTAGCACGCAGGAGGGACCAGGCTGATCCCCGACTTGCACAT
1 CGAGGGTTGTGACAGTAGGATCGGTAGCACGCAGGAGGGACCAGGCTGATCCCCGACTTGCACAT
* * * * *
22852081 TCTGCCTCTCTGGCCGGCTGAGTGCCCGCATGC-C-CATTTCATGGGTTGACTTAGGCATAGGGA
66 TCTACCTCTCCGGCCGGCTCAGTG-CC-CATACACTCATTTCATGGGTTGACTTAGGCATACGGA
*
22852144 GTTCGTTCCATCCCCCAGTCAGAC
129 GTTCATTCCATCCCCCAGTCAGAC
* * * ** * * **
22852168 CGAGGGTTGTGGCAGTGGGA-CTGGTAGCACGCAGAGGGGGACTGGGCTGATCCTCGATTTGTGC
1 CGAGGGTTGTGACAGTAGGATC-GGTAGCACGCAG-GAGGGACCAGGCTGATCCCCGACTTGCAC
* * *
22852232 ATTAC-ACCTCTCCGGTCGGCTCAGTGCCCATACACTCGTTTCGTGGGTTGACTTAGGCATACGG
64 ATT-CTACCTCTCCGGCCGGCTCAGTGCCCATACACTCATTTCATGGGTTGACTTAGGCATACGG
22852296 AGTTCATTCC
128 AGTTCATTCC
22852306 CAATCTAAGA
Statistics
Matches: 114, Mismatches: 19, Indels: 9
0.80 0.13 0.06
Matches are distributed among these distances:
151 5 0.04
152 32 0.28
153 76 0.67
154 1 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (152 bp):
CGAGGGTTGTGACAGTAGGATCGGTAGCACGCAGGAGGGACCAGGCTGATCCCCGACTTGCACAT
TCTACCTCTCCGGCCGGCTCAGTGCCCATACACTCATTTCATGGGTTGACTTAGGCATACGGAGT
TCATTCCATCCCCCAGTCAGAC
Found at i:22852843 original size:26 final size:26
Alignment explanation
Indices: 22852814--22852866 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22852804 GTTGACTTAG
22852814 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22852840 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22852866 G
1 G
22852867 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22853142 original size:158 final size:159
Alignment explanation
Indices: 22852840--22853183 Score: 405
Period size: 158 Copynumber: 2.2 Consensus size: 159
22852830 CCCAGTCTAA
* * *
22852840 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGCGTTACGGTAGCGAGACTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGAACCGAGCGTTACGGTAGCAAGACTGACA
* ** **
22852905 ACACACAGAAGGGGATCGGGCCGATCCCTGGCTTACGCATTATGCCTCTCCGGTCGGCTCAACGC
66 ACACACAGAAGGGGACCAAGCCGATCCCTGGCTTACGCATTATGCCTCTCCGACCGGCTCAACGC
*
22852970 CCGAACGCTCATTTCGTGGGTTGACTTAG
131 CCGAACGCTCATTTCATGGGTTGACTTAG
* * * **
22852999 GCATACGGAGTTTATTCCCAGTCTAAGATCGAA-TCGAACTGAGGGTTGTGGTAGCAAGA-TCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACT-GAACCGAGCGTTACGGTAGCAAGACT-GA
* * * *
22853062 CAGCACACAG-GGGGGACCAAGCCGGT-CCTCGGCTTACGCATTCTGCCTCTCCGACCGGCT-AA
64 CAACACACAGAAGGGGACCAAGCCGATCCCT-GGCTTACGCATTATGCCTCTCCGACCGGCTCAA
* *
22853124 -GCACTCGCACGCTCATTTCATGGGTTGGCTTAG
128 CGC-C-CGAACGCTCATTTCATGGGTTGACTTAG
22853157 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
22853184 CATATGGAGT
Statistics
Matches: 158, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
156 2 0.01
157 9 0.06
158 87 0.55
159 60 0.38
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGAACCGAGCGTTACGGTAGCAAGACTGACA
ACACACAGAAGGGGACCAAGCCGATCCCTGGCTTACGCATTATGCCTCTCCGACCGGCTCAACGC
CCGAACGCTCATTTCATGGGTTGACTTAG
Found at i:22853214 original size:26 final size:26
Alignment explanation
Indices: 22853157--22853214 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
22853147 GTTGGCTTAG
*
22853157 GCATACGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
22853183 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
22853209 GCATAT
1 GCATAT
22853215 TTGGATCGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATGTCTAA
Found at i:22853348 original size:188 final size:188
Alignment explanation
Indices: 22853031--22853397 Score: 639
Period size: 188 Copynumber: 2.0 Consensus size: 188
22853021 CTAAGATCGA
* *
22853031 ATCGAACTGAGGGTTGTGGTAGCAAGATCGACAGCACACAGGGGGGACCAAGCCGGTCCTCGGCT
1 ATCGAACTGAGGGTTGTGGTAGCAAGATCGACAGCACACAGGGGGGACCAAGCCGATCCTCGACT
22853096 TACGCATTCTGCCTCTCCGACCGGCTAAGCACTCGCACGCTCATTTCATGGGTTGGCTTAGGCAT
66 TACGCATTCTGCCTCTCCGACCGGCTAAGCACTCGCACGCTCATTTCATGGGTTGGCTTAGGCAT
*
22853161 ACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCC-ATGTCTAAGCATATTTGG
131 ACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCTA-GTCTAAGCATATTTGG
*
22853219 ATCGAACTGAGGGTTGTGGTAGCAAGATCGACAGCACACAGGGGGGACCGAGCCGATCC-CTGAC
1 ATCGAACTGAGGGTTGTGGTAGCAAGATCGACAGCACACAGGGGGGACCAAGCCGATCCTC-GAC
* *
22853283 TTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCTCGCACGCTCATTTCATGGGTTGGCTTAGGCA
65 TTACGCATTCTGCCTCTCCGACCGGCTAAGCACTCGCACGCTCATTTCATGGGTTGGCTTAGGCA
*
22853348 TACAGAGTTTATTCCATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAG
130 TACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAG
22853398 ATCAGACTGG
Statistics
Matches: 170, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
187 1 0.01
188 168 0.99
189 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (188 bp):
ATCGAACTGAGGGTTGTGGTAGCAAGATCGACAGCACACAGGGGGGACCAAGCCGATCCTCGACT
TACGCATTCTGCCTCTCCGACCGGCTAAGCACTCGCACGCTCATTTCATGGGTTGGCTTAGGCAT
ACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGCATATTTGG
Found at i:22853754 original size:26 final size:26
Alignment explanation
Indices: 22853725--22853777 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22853715 GTTGACTTAG
22853725 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
22853751 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22853777 G
1 G
22853778 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22854275 original size:26 final size:26
Alignment explanation
Indices: 22854226--22854278 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22854216 GTTGGCTGAG
*
22854226 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
22854252 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
22854278 G
1 G
22854279 ATTGGAACGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:22854549 original size:13 final size:13
Alignment explanation
Indices: 22854531--22854558 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
22854521 TGCGTATTAT
22854531 GCCTCTCCGATCG
1 GCCTCTCCGATCG
22854544 GCCTCTCCGATCG
1 GCCTCTCCGATCG
22854557 GC
1 GC
22854559 TGAGCGCCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.46, G:0.25, T:0.21
Consensus pattern (13 bp):
GCCTCTCCGATCG
Found at i:22854950 original size:868 final size:873
Alignment explanation
Indices: 22853239--22855149 Score: 2219
Period size: 868 Copynumber: 2.2 Consensus size: 873
22853229 GGGTTGTGGT
* * * * *
22853239 AGCAAGATCGACAGCACACAGGGGGGACCGAGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGA
1 AGCAGGATCAACAGCACATAGGGGGGACCG-GCCGATCCCCGACTT-CGCATTTTGCCTCTCCGA
* * * * * * *
22853304 CCGGCTAAGCGCTCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTTATTCCATGTCT
64 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTGCATGTCT
* * * *
22853369 AAGCATATGGAGTTCATTCCTAGTCTAAGATCAGACTGGATTGAGGGTTGCGGCAGCAGGACCAG
129 AAGCATATGGAGTTCATTCCCAGTCTAAGATTAGACGGGATCGAGGGTTGCGGCAGCAGGACCAG
* * *
22853434 CAACAGGATCAACAGCACGTAGGGGGGGACCAAGTCGATCCCAGGCTTGCGCATTTTGCCTCTCT
194 CAACAAGATCAACAGCACGTAGGGGGGGACCAAGCCGATCCCAGGCTTGCGCATTTTGCCTCTCA
** * * * * *
22853499 GACCGACCTCTCACCCGGACGCTCGTTTCACGGGTTGGCTTAGGCATACGAAGTTCATTCCATGT
259 GACCGACCTAGCACCCGCACGATCATTTCACGAGTTGGCTTAGGCATACGAAGTTCATTCAATGT
** *
22853564 CTAAGCCTTAGCCGGACCAAGGGTTGTGGCAACAGGACCGGTAACGGGATTGACAACACGCAGAG
324 CTAAGCCCCAGCAGGACCAAGGGTTGTGGCAACAGGACCGG--AC-GG--TGACAACACG-AGAG
* * * * *
22853629 GGGGACCGACTGATCCCCGTCTTGCACATTATGCCTCTTCAGTCGGCCTCTCTGGCCGACTGAGC
383 AGGGACCGACTGATCCCCGGCTTGCACATTATGCCTCTCCAGTCGGCCTCTCCGACCGACTGAGC
* * *
22853694 GCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGG
448 GCCCGCATGCTCGTTTCATGGGTTGACTTAGGCAAACGGAGTTCATCCCCAGTCTAAGCATACGG
* * * * *
22853759 AGTTCATTCCCAGTCTAAGATCGGACCAGATCGAAGGTTACGACAGTAGGATCGACAGCATGTAG
513 AGTTCATTCCCAGTCTAAGATCAGACCAGATCCAAGGTTACGACAGCAGGATCGACAGCACGCAG
* * ** * * ***
22853824 GGGGGATCGGGTGGATCCCCGGCTTGCGCATTCTGCTTCTCCAACTGGCTGAGCGCTCGCATGTC
578 GGGGGACCAGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCAACTGGCTGAGCGCTCGCACACC
* * *** *
22853889 CGTTTCATGGGTTGGCTTAGTTTTAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
643 CATTTCACGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACAGAGGG
* * * * * *
22853954 TTGTGGCAGCGGGACCGGTAGCACGCAGAGAGGGATCGAGCCGATCCTCGGCTTGTGCATTATGC
708 TTATGGCAGCGGGACCGGCAACACACAGAGAGGGATCGAGCCAATCCTCGGCTTGCGCATTATGC
22854019 CTCTCCGACCGGCTCAACGCCCGAACACTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATT
773 CTCTCCGACCGGCTCAACGCCCGAACACTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATT
* ** *
22854084 CCCAGTCTAAGATCAGACCGGACCGAGGGTTTTGGC
838 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGAC
* ** * * * * *
22854120 AGTAGGATCAATGGTACGTAGGGGGGACCAGGCTGTTCCCCGACTTACGCATTTTGCCTCTCCGG
1 AGCAGGATCAACAGCACATAGGGGGGACC-GGCCGATCCCCGACTT-CGCATTTTGCCTCTCCGA
** * * *
22854185 TGGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTGAGGCATACGGAGTTCATTGCATGTCT
64 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTGCATGTCT
* *
22854250 AAGCATATGGAGTTCATTCCCAGTCTAAGATTGGAACGGGATCGAGGGTTGCGGTAGCAGGACCA
129 AAGCATATGGAGTTCATTCCCAGTCTAAGATTAG-ACGGGATCGAGGGTTGCGGCAGCAGGACCA
* * * * *
22854315 GTAGCAAGATCGACAGCACGTA-GGGGGGACCGAGCCGATCCCCA-GCTTGCGCATTTTATGTCT
193 GCAACAAGATCAACAGCACGTAGGGGGGGACCAAGCCGAT-CCCAGGCTTGCGCA-TTT-TGCCT
* * * * * *
22854378 C-CAG-CTG-GCTGAGCACCCGCCCTATCATTTCATC-AGTTGGCTTAGGCATATGGAGTTCATT
255 CTCAGACCGACCT-AGCACCCGCACGATCATTTCA-CGAGTTGGCTTAGGCATACGAAGTTCATT
* ** *
22854439 CAATGTCTAAGCCCCAGCAGGA-CAGAGGGTTTTGGCAGTAGGATCGG-C-G-G-C-ACACG-GA
318 CAATGTCTAAGCCCCAGCAGGACCA-AGGGTTGTGGCAACAGGACCGGACGGTGACAACACGAGA
* * ** * *
22854497 GAGGGACTGAGCTGATCCTCGGCTTGCGTATTATGCCTCTCC-GATCGGCCTCTCCGATCGGCTG
382 GAGGGACCGA-CTGATCCCCGGCTTGCACATTATGCCTCTCCAG-TCGGCCTCTCCGACCGACTG
*
22854561 AGCGCCCGCATGCTCG-TTCATGGGTTGACTTAGGCAAATGGAGTTCATCCCCAGTCTAAGCATA
445 AGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCAAACGGAGTTCATCCCCAGTCTAAGCATA
* * *
22854625 CGGAGTTCATTCCCAGTCTAAGATCAGACTAGA-CCAAGGGTTGCAGTC-GCAGGATCGACAGCA
510 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCCAA-GGTTAC-GACAGCAGGATCGACAGCA
* ** *
22854688 CGCA-GGGGGACCAGGCCGATCCCCGGCTTGCACATTCTGCCTCTTC-GGTCGGTTGAGCAGC-C
573 CGCAGGGGGGACCAGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCAACT-GGCTGAGC-GCTC
*
22854750 GCACACCCATTTCGCGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
636 GCACACCCATTTCACGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
* *
22854815 CAGAGGGTTATGGCAGCGGGACCGGCAACACACAGAGGGGGATCGGGCCAATCCTCGGCTTGCGC
701 CAGAGGGTTATGGCAGCGGGACCGGCAACACACAGAGAGGGATCGAGCCAATCCTCGGCTTGCGC
** * * * * * * * **
22854880 ATTATGCCTCTTTGGCTGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGA
766 ATTATGCCTCTCCGACCGGCTCAACGCCCGAACACTCATTTCGTGGGTTGACTTAGGCATACAAA
*
22854945 GTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGAC
831 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGAC
* * * * *
22854988 AGCAGGATCGACAGCACATAGAGGGGATCGGGCCAATCCCCAACTT-GCATATTCTGCCTCTCCG
1 AGCAGGATCAACAGCACATAGGGGGGA-CCGGCCGATCCCCGACTTCGCAT-TT-TGCCTCTCCG
* *
22855052 ACCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTTG-ATGA
63 ACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA-TTGCATGT
*
22855116 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
127 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATT
22855150 TTGAGCCACG
Statistics
Matches: 864, Mismatches: 148, Indels: 49
0.81 0.14 0.05
Matches are distributed among these distances:
866 4 0.00
867 3 0.00
868 377 0.44
869 113 0.13
870 60 0.07
871 5 0.01
872 1 0.00
873 1 0.00
876 1 0.00
878 1 0.00
880 4 0.00
881 233 0.27
882 56 0.06
883 5 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (873 bp):
AGCAGGATCAACAGCACATAGGGGGGACCGGCCGATCCCCGACTTCGCATTTTGCCTCTCCGACC
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTGCATGTCTAA
GCATATGGAGTTCATTCCCAGTCTAAGATTAGACGGGATCGAGGGTTGCGGCAGCAGGACCAGCA
ACAAGATCAACAGCACGTAGGGGGGGACCAAGCCGATCCCAGGCTTGCGCATTTTGCCTCTCAGA
CCGACCTAGCACCCGCACGATCATTTCACGAGTTGGCTTAGGCATACGAAGTTCATTCAATGTCT
AAGCCCCAGCAGGACCAAGGGTTGTGGCAACAGGACCGGACGGTGACAACACGAGAGAGGGACCG
ACTGATCCCCGGCTTGCACATTATGCCTCTCCAGTCGGCCTCTCCGACCGACTGAGCGCCCGCAT
GCTCGTTTCATGGGTTGACTTAGGCAAACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCAGATCCAAGGTTACGACAGCAGGATCGACAGCACGCAGGGGGGACC
AGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCAACTGGCTGAGCGCTCGCACACCCATTTCAC
GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACAGAGGGTTATGGCA
GCGGGACCGGCAACACACAGAGAGGGATCGAGCCAATCCTCGGCTTGCGCATTATGCCTCTCCGA
CCGGCTCAACGCCCGAACACTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCT
AAGATCAGACCAGACCGAGGGTTGCGAC
Found at i:22855084 original size:158 final size:158
Alignment explanation
Indices: 22854620--22855109 Score: 533
Period size: 159 Copynumber: 3.1 Consensus size: 158
22854610 CCCAGTCTAA
* *
22854620 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTAGACCAAGGGTTGCAGTC-GCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-AGACCGAGGGTTGC-GACAGCAGGATCGA
* * * * * *
22854683 CAGCACGCAG-GGGGACCAGGCCGATCCCCGGCTTGCACATTCTGCCTCTTCGGTCGGTTGAGCA
64 CAGCACACAGAGGGGATCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGGCTGAGC-
* * * *
22854747 G-CCGCACACCCATTTCGCGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * ** * * * *
22854777 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACAGAGGGTTATGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGA
* * * * * * *
22854840 CAACACACAGAGGGGGATCGGGCCAATCCTCGGCTTGCGCATTATGCCTCTTTGGCTGGCTCAGC
64 CAGCACACAGA-GGGGATCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGGCTGAGC
* *
22854905 GCCCGCACGCTCGTTTCGTGGGTTGACTTAT
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
22854936 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGACA
* ** * * *
22855001 GCACATAGAGGGGATCGGGCCAATCCCCAACTTGCATATTCTGCCTCTCCGACCGGCTGAGCGCC
66 GCACACAGAGGGGATCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGGCTGAGCGCC
*
22855066 CGCACGCTCGTTTTGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
22855094 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
22855110 TGATGACTAA
Statistics
Matches: 266, Mismatches: 58, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
156 5 0.02
157 46 0.17
158 94 0.35
159 118 0.44
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGACA
GCACACAGAGGGGATCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:22861933 original size:26 final size:26
Alignment explanation
Indices: 22861897--22861949 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22861887 GTTGGCTTAG
22861897 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22861923 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22861949 G
1 G
22861950 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22862306 original size:26 final size:26
Alignment explanation
Indices: 22862277--22862329 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22862267 GTTGACTTAG
22862277 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22862303 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22862329 G
1 G
22862330 ATCATATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22862761 original size:158 final size:158
Alignment explanation
Indices: 22862303--22862804 Score: 559
Period size: 158 Copynumber: 3.2 Consensus size: 158
22862293 CCCAGTCTAA
* * *
22862303 GCATACGGAGTTCATTCCCAGTCTAAGATCATATTGGACTGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCACACTGGACTGAGGGTTGTGGCAGCAGGATCGACA
* * * * * *
22862368 GCACGCAGTGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGTTGAGCGCC
66 GCACGCAGGGGGGATCGGGCAGATCCTCGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCGCC
*
22862433 CGCACGCCCGTTTCGTGGGTTGACTTAG
131 CGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * ** *
22862461 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCTGGACTAAGGGTTTTGGTAGTGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCACA-CTGGACTGAGGGTTGTGGCAGCAGGATCGA
* * * ***
22862524 CAGCACGCAGAGGGGGATCGGGCCA-ATCCTCGGCTTGCACATTATGCCTCT-TCGGTCGGCCCA
64 CAGCACGCAG-GGGGGATCGGG-CAGATCCTCGGCTTGCGCATTCTGCCTCTCT-GGCCGGTTGA
* *
22862587 ACACCCGCACGCTCGTTTCGTGGGTTGACTTAG
126 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** *
22862620 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGAC-GAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCACACTGGACTGAGGGTTGTGGCAGCAGGATCGACA
* *
22862684 GCACGTAGGGGGAGA-CTGGGCAGATCCTCGACTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCG
66 GCACGCAGGGGG-GATC-GGGCAGATCCTCGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCG
* * *
22862748 CCCGCACGGTCGTTTCGTTGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
22862778 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
22862805 CATACAGAGT
Statistics
Matches: 279, Mismatches: 53, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
157 15 0.05
158 164 0.59
159 94 0.34
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCACACTGGACTGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGATCGGGCAGATCCTCGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:22862807 original size:26 final size:26
Alignment explanation
Indices: 22862778--22862830 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22862768 GTTGGCTTAG
*
22862778 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
22862804 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22862830 G
1 G
22862831 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22864160 original size:26 final size:26
Alignment explanation
Indices: 22864131--22864183 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22864121 GTTGACTTAG
*
22864131 GCATACGGAGGTCATCCCCAGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
* * *
22864157 GCATACGAAGTTCATTCCCTGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
22864183 G
1 G
22864184 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGGTCATCCCCAGTCTAA
Found at i:22864445 original size:159 final size:156
Alignment explanation
Indices: 22864198--22864499 Score: 399
Period size: 159 Copynumber: 1.9 Consensus size: 156
22864188 GATCGGATCG
* * *
22864198 AGGGTTGCGGCAGCAGGATCGACAGATGCAGGGGGACCGGACCGATCCCTAGCTTGCACATTCTG
1 AGGGTTGCGGCAGCAGGATCGACAGACGCAGGGGGACCGGACCGATCCCCAGCTTGCACATTATG
* * * * * *
22864263 CCTCTCTAGTCGGCTGAGTGCCCGTACGCCCGTTTCATCGGTTGGCTTAGGCATAGGGAGTTCAT
66 CCTCTCGAGCCGGCTCAGTGCCCGCACGCCCATTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
22864328 TCCATGTCTAAGCCCCAGTGGAACTA
131 TCCATGTCTAAGCCCCAGTGGAACTA
* * ** *
22864354 AGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCAGCTTGCGCATT
1 AGGGTTGCGGCAGCAGGATCGACAG-ACGC--AGGGGGACCGGACCGATCCCCAGCTTGCACATT
* ** *
22864419 ATGCCTCTCCGA-CCGGCTCAGTGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGT
63 ATGCCTCT-CGAGCCGGCTCAGTGCCCGCACGCCCATTTCATCGGTTGGCTTAGGCATACGGAGT
22864483 TCATTCCATGTCTAAGC
127 TCATTCCATGTCTAAGC
22864500 ATATGGAGTT
Statistics
Matches: 124, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
156 23 0.19
157 3 0.02
159 96 0.77
160 2 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (156 bp):
AGGGTTGCGGCAGCAGGATCGACAGACGCAGGGGGACCGGACCGATCCCCAGCTTGCACATTATG
CCTCTCGAGCCGGCTCAGTGCCCGCACGCCCATTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCCCCAGTGGAACTA
Found at i:22864508 original size:26 final size:26
Alignment explanation
Indices: 22864472--22864524 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22864462 GTTGGCTTAG
22864472 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
22864498 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22864524 G
1 G
22864525 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22865227 original size:26 final size:26
Alignment explanation
Indices: 22865191--22865243 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22865181 GTTGACTTAG
22865191 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
22865217 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22865243 G
1 G
22865244 ATCGAACGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22865230 original size:196 final size:195
Alignment explanation
Indices: 22864889--22865275 Score: 521
Period size: 196 Copynumber: 2.0 Consensus size: 195
22864879 AGGGTTGTGA
* ** * *
22864889 CAGCAGGATCGATAGCATGTAGGGGGGACTGGGTCGATCCCCGACTTACGCATTCTACCTCTCCA
1 CAGCAGGATCGACAGCACATAGGGGGGACCGAGTCGATCCCCGACTTACGCATTCTACCTCTCCA
* * * * *
22864954 GTCGGCTGAGCGCTCACACGCTCATTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
66 GCCGGCTGAGCGCCCACACACTCATTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCT
22865019 AAGCATACGGAGTTCATTCCCAGTCAAAGATC-AGAC-CAGACCGAGGGTTGCGACAACAGGACC
131 AAGCATACGGAGTTCATTCCCAGTCAAAGATCGA-ACGCAGACCGAGGG-TGCGACAACAGGACC
22865082 AG
194 AG
* ** * **
22865084 CAGCAGGATCGACAGCACATAGGGGGGACCGAGTCGATCCCCGGCTTGTGCATTCTACCTGTCTG
1 CAGCAGGATCGACAGCACATAGGGGGGACCGAGTCGATCCCCGACTTACGCATTCTACCTCTCCA
*
22865149 GCCGGCCT-AGCGCCCGCACACTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCC-TAG
66 GCCGG-CTGAGCGCCCACACACTCA-TTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCAT-G
* * *
22865212 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACGCAGATCGAGGGTGCGACAGCAGGA
128 TCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGAACGCAGACCGAGGGTGCGACAACAGGA
22865276 TCGACAGTAT
Statistics
Matches: 167, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
195 72 0.43
196 84 0.50
197 11 0.07
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (195 bp):
CAGCAGGATCGACAGCACATAGGGGGGACCGAGTCGATCCCCGACTTACGCATTCTACCTCTCCA
GCCGGCTGAGCGCCCACACACTCATTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCT
AAGCATACGGAGTTCATTCCCAGTCAAAGATCGAACGCAGACCGAGGGTGCGACAACAGGACCAG
Found at i:22866608 original size:27 final size:25
Alignment explanation
Indices: 22866578--22866630 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 25
22866568 GTTGGCTTAG
22866578 GCATACGAAGTTTCATTCCATCTCTAA
1 GCATACGAAG-TTCATTCC-TCTCTAA
* *
22866605 GCATACGGAGTTCATTCCTGTCTAA
1 GCATACGAAGTTCATTCCTCTCTAA
22866630 G
1 G
22866631 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 8 0.33
27 9 0.38
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCTCTCTAA
Found at i:22868174 original size:26 final size:26
Alignment explanation
Indices: 22868144--22868196 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22868134 GTTGACTTAG
22868144 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
22868170 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22868196 G
1 G
22868197 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22868727 original size:11 final size:11
Alignment explanation
Indices: 22868711--22868741 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
22868701 CCTGGGGCAC
22868711 CATCGTCGGAG
1 CATCGTCGGAG
22868722 CATCGTCGGAG
1 CATCGTCGGAG
22868733 CATCGTCGG
1 CATCGTCGG
22868742 TGAGCCTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.16, C:0.29, G:0.35, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:22869354 original size:26 final size:26
Alignment explanation
Indices: 22869324--22869376 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22869314 GTTGACTTAG
22869324 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
* *
22869350 GCATATGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22869376 G
1 G
22869377 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22869882 original size:158 final size:157
Alignment explanation
Indices: 22869405--22869882 Score: 517
Period size: 158 Copynumber: 3.0 Consensus size: 157
22869395 TTGCGAAAGC
* * * * * ** * * *
22869405 AGGATCGACAACACGTAGGAGGGACCGGACCAATCCCTAACTTACGCATTCTGCCTTTTCGACCG
1 AGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTTCGACCG
* * *
22869470 GCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGCCATAAGGAGTTCATTCCATGTCTAAG
66 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * *
22869535 CCCCAGTCGGACCGAGGGTTGTGGTAGC
131 CCCCAG-CCGACCGAGGGTTGTGGCAGT
* * * * * * * **
22869563 GGGATCGGCAGCACGTAGAGGGGATCGGGTCGATCCCCGGCTTGCACATTATGCCTCTTCGGCTA
1 AGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTTCGACCG
* * * * * * * *
22869628 GCTCAACGCCTGAACGCTCATTTCATGGGTTGACTTAAGCATACAGAGTTCATTCCCA-GTCTAA
66 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA
* ** * * **
22869692 GATCGGATCAGACCGAGGGTTGCAGCAGT
130 G-CCCCAGCCGACCGAGGGTTGTGGCAGT
*
22869721 AGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGACCG
1 AGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTTCGACCG
* *
22869786 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
*
22869851 CCCCAGCCGTACCGAGGGTTGTGGCAAT
131 CCCCAGCCG-ACCGAGGGTTGTGGCAGT
22869879 AGGA
1 AGGA
22869883 CCGGCAGCGG
Statistics
Matches: 249, Mismatches: 67, Indels: 8
0.77 0.21 0.02
Matches are distributed among these distances:
157 7 0.03
158 237 0.95
159 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
AGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTTCGACCG
GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CCCCAGCCGACCGAGGGTTGTGGCAGT
Found at i:22870045 original size:26 final size:26
Alignment explanation
Indices: 22870016--22870086 Score: 115
Period size: 26 Copynumber: 2.7 Consensus size: 26
22870006 AGGCATACAA
*
22870016 AGTTCATCCCCAGTCTAAGCATATGG
1 AGTTCATCCCCAGTCTAAGCATACGG
*
22870042 AGTTCATCCCCAGTCTAAACATACGG
1 AGTTCATCCCCAGTCTAAGCATACGG
*
22870068 AGTTCATTCCCAGTCTAAG
1 AGTTCATCCCCAGTCTAAG
22870087 ATTAGATCAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (26 bp):
AGTTCATCCCCAGTCTAAGCATACGG
Found at i:22870472 original size:158 final size:157
Alignment explanation
Indices: 22870061--22870551 Score: 452
Period size: 158 Copynumber: 3.1 Consensus size: 157
22870051 CCAGTCTAAA
* * *
22870061 CATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGTTGCGGTAGTAGGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGGTTGCGGTAGCAGGATCGACAG
* * * * * * * *
22870126 CACACAGGGGAGACCGGGCTAATCCCTGGCTTACGTATTCTGTCTCTCCGGTTGGCTGAGTGCCT
66 CACGCAGGGGGGACCGGGCTGATCCC-GGCTTACGTATTCTGCCTCTTCGGTCGGCTGAGCGCCC
* * *
22870191 GCACGCCCGTTTCGTCGGTTGGCTTAGG
130 GCACGCTCGTTTCGTGGGTTGACTTAGG
* * * ** * ** * * * **
22870219 CATA-GGCAATTGATT-TCATGTC-AAGCCCTAGCCAGACTGAGGGTTGTGGTAGCGGGGCCGAC
1 CATACGG-AGTTCATTCCCA-GTCTAAGATCAAATCAGACCGAGGGTTGCGGTAGCAGGATCGAC
* * ** * * * *
22870281 AGCATGCAGAGGGGGATCGGG-TCGATCCTCGGCTTGTGCATTATGCCTCTTCGATCGGCTCAGC
64 AGCACGCAG-GGGGGACCGGGCT-GATCC-CGGCTTACGTATTCTGCCTCTTCGGTCGGCTGAGC
* *
22870345 GCCCGCACGCTCGTTCCGTGGGTTGACTTATG
126 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* **
22870377 CATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTGCGGTAGCAGGATCGGTAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGGTTGCGGTAGCAGGATCGACAG
* * *
22870442 CACGCAGGGGGGACCGGGCTGATCCACGGCTTACGTATTCTGCCTCTTCGGCCAGCTGAGCACCC
66 CACGCAGGGGGGACCGGGCTGATCC-CGGCTTACGTATTCTGCCTCTTCGGTCGGCTGAGCGCCC
* * *
22870507 GCACGTTCATTTCGTGAGTT-AGCTTAGG
130 GCACGCTCGTTTCGTGGGTTGA-CTTAGG
*
22870535 CATACGCAGTTCATTCC
1 CATACGGAGTTCATTCC
22870552 ATTACTAAGC
Statistics
Matches: 252, Mismatches: 71, Indels: 20
0.73 0.21 0.06
Matches are distributed among these distances:
157 40 0.16
158 171 0.68
159 41 0.16
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGGTTGCGGTAGCAGGATCGACAG
CACGCAGGGGGGACCGGGCTGATCCCGGCTTACGTATTCTGCCTCTTCGGTCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGG
Found at i:22870772 original size:26 final size:26
Alignment explanation
Indices: 22870743--22870795 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22870733 GTTGACTTAG
22870743 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
22870769 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22870795 G
1 G
22870796 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22871121 original size:704 final size:707
Alignment explanation
Indices: 22870034--22871381 Score: 1667
Period size: 704 Copynumber: 1.9 Consensus size: 707
22870024 CCCAGTCTAA
* *
22870034 GCATATGGAGTTCATCCCCAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGAC
1 GCATACGGAGTTCATCCCCAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGAC
* * * * **
22870099 CGAGGGTTGCGGTAGTAGGATCGACAGCACACAGGGGAGACCGGGCTAATCCCTGGCTTACGTAT
66 CGAGGGTTGCGGTAGCAGGATCGACAGCACACAGGGGAGACCAGGCTAATCCCCGACTTACACAT
* ** * * * *
22870164 TCTGTCTCTCCGGTTGGCTGAGTGCCTGCACGCCCGTTTCGTCGGTTGGCTTAGGCATAGGCAAT
131 TCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGCCCATTTCATCGGTTGACTTAGGCATAGGCAAT
* * * * * *
22870229 TGATTTCATGTCAAGCCCTAGCCAGACTGAGGGTTGTGGTAGCGGGGCCGACAGCATGCAGAGGG
196 TGATTCCA-GTC-A-CCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGG
* ** * * *
22870294 GGATCGGGTCGATCCTCGGCTTGTGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTCGT
258 GGATCGGGTCGATCCTCGACTTGTGCATTACACCTCTCCGATCGGCTCAGCGCCCACACACTCGT
* * *
22870359 TCCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTG
323 TCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAAATCGGACCGAGGGTTA
* ** *
22870424 CGGTAGCAGGATCGGTAGCACGCAGGGGGGACCGGG-CTGATCCAC-GGCTTACGTATTCTGCCT
388 CGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTC-GATCC-CTGGCTTACGCATTCTGCCT
* * * *
22870487 CTTCGGCCAGCTGAGCACCCGCACGTTCATTTCGTGAGTTAGCTTAGGCATACGCAGTTCATTCC
451 CTCCGACCAGCTGAGCACCCACACGCTCATTTCGTGAGTTAGCTTAGGCATACGCAGTTCATTCC
* *
22870552 AT-TACTAAGCATATGGAGATCATTCCCAGTCTAAGATCAG-ACTGGACCGAGGGTTACGATAAG
516 ATGT-CTAAGCATACGGAGATCATTCCCAGTCTAAGATCAGAAC-GGACCAAGGGTTACGAT-AG
* * ** * *
22870615 -AGCACCAGTAACAGGATCGACAGCACGTAG-GGAGGATCGAGTTGATCCCCGGCTTGTGCATTC
578 CAGCACCAGCAACAGGATCGACAGCACGCAGAGGAGGATCGAGCCGATCCACGGCTTGCGCATTC
22870678 TACCTCTTCGGCCGGCCTCTCCGATCGATTGAGTGCCCACACGGTCGTTTTGTGGGTTGACTTAG
643 TACCTCTTCGGCCGGCCTCTCCGATCGATTGAGTGCCCACACGGTCGTTTTGTGGGTTGACTTAG
* * *
22870743 GCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGAC
1 GCATACGGAGTTCATCCCCAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGAC
* ** ** * *
22870808 CGAGGGTTGCGGTAGCAGGATTGGTAGCATGCAGGAGG-GACCAGGCTGATCCCCGACTTGCACA
66 CGAGGGTTGCGGTAGCAGGATCGACAGCACACAGG-GGAGACCAGGCTAATCCCCGACTTACACA
* * * * *
22870872 TTCTGCCTCTCTGGCCGGCTGAGTGCCCGCATGCCCATTTCATGGGTTGACTTAGGCATAGGGAG
130 TTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGCCCATTTCATCGGTTGACTTAGGCATAGGCAA
* * * **
22870937 TTCG-TTCCA-TC-CCCCAGTCAGACCGAGGGTTGTGGCAGTGGGACTGGTAGCACGCAGAGGGG
195 TT-GATTCCAGTCACCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGG
* * * *
22870999 GA-CTGGG-CTGATCCTCGATTTGTGCATTACACCTCTCCGGTCGGCTCAGTGCCCATACACTCG
259 GATC-GGGTC-GATCCTCGACTTGTGCATTACACCTCTCCGATCGGCTCAGCGCCCACACACTCG
* * *
22871062 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAATTGGACCGAGGGTT
322 TTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAAATCGGACCGAGGGTT
* * *
22871127 ACGGCAGCAGGATCGACAGCACGCAGGGGGGACTGGGTCGGTCCCTGGCTTGCGCATTCTGCCTC
387 ACGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTACGCATTCTGCCTC
* * * * * * * *
22871192 TCCGATCGGTTGAGCACCCACACGCTCATTTTGTGGGTTGGCTTAGGCATATGGAGTTCATTCCA
452 TCCGACCAGCTGAGCACCCACACGCTCATTTCGTGAGTTAGCTTAGGCATACGCAGTTCATTCCA
** * * * * *
22871257 TGTCTAAGGGTACGGAGTTCATTCCCATTCTAAGATCAGAACGGACCAAGGGTTGCGGTAGCAGG
517 TGTCTAAGCATACGGAGATCATTCCCAGTCTAAGATCAGAACGGACCAAGGGTTACGATAGCAGC
* *
22871322 ACCAGCAGCAGGATCGACAGCACGCAGAGGGGGATCGAGCCGATCCACGGCTTGCGCATT
582 ACCAGCAACAGGATCGACAGCACGCAGAGGAGGATCGAGCCGATCCACGGCTTGCGCATT
22871382 TTGCCTCTCC
Statistics
Matches: 536, Mismatches: 93, Indels: 24
0.82 0.14 0.04
Matches are distributed among these distances:
703 5 0.01
704 328 0.61
705 31 0.06
707 2 0.00
709 167 0.31
710 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (707 bp):
GCATACGGAGTTCATCCCCAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGAC
CGAGGGTTGCGGTAGCAGGATCGACAGCACACAGGGGAGACCAGGCTAATCCCCGACTTACACAT
TCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGCCCATTTCATCGGTTGACTTAGGCATAGGCAAT
TGATTCCAGTCACCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGA
TCGGGTCGATCCTCGACTTGTGCATTACACCTCTCCGATCGGCTCAGCGCCCACACACTCGTTCC
GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAAATCGGACCGAGGGTTACGG
CAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCG
ACCAGCTGAGCACCCACACGCTCATTTCGTGAGTTAGCTTAGGCATACGCAGTTCATTCCATGTC
TAAGCATACGGAGATCATTCCCAGTCTAAGATCAGAACGGACCAAGGGTTACGATAGCAGCACCA
GCAACAGGATCGACAGCACGCAGAGGAGGATCGAGCCGATCCACGGCTTGCGCATTCTACCTCTT
CGGCCGGCCTCTCCGATCGATTGAGTGCCCACACGGTCGTTTTGTGGGTTGACTTAG
Found at i:22871639 original size:26 final size:26
Alignment explanation
Indices: 22871603--22871655 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22871593 GTTGACTTAG
22871603 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
22871629 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22871655 G
1 G
22871656 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22871923 original size:158 final size:157
Alignment explanation
Indices: 22871629--22871970 Score: 431
Period size: 158 Copynumber: 2.2 Consensus size: 157
22871619 CCTAGTCTAA
* * * *
22871629 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCAAGCATTACGGTAGCGAGACCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAATCGAACAAGCATTACGGTAGCAAGACCGACA
* *
22871694 ACACAGAAGGGGACCGAGCCGATCCTCGGCTTGCGCATTATGCCTCACCGGCCGGCTCAACGCCC
66 ACACAGAAGGGGACCAAGCCGATCCTCGGCTTGCGCATTATGCCTCACCGACCGGCTCAACGCCC
22871759 GAACGCTCATTTCATGGGCTGACTTAG
131 GAACGCTCATTTCATGGGCTGACTTAG
* ** ** *
22871786 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAATCGAACTGAGGGTTGTGGTAGCAAGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAATCGAAC-AAGCATTACGGTAGCAAGACCGAC
* * * *
22871850 AGCACACAG-GGGGGACCAAGCCGGTCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCT-AAGC
65 A--ACACAGAAGGGGACCAAGCCGATCCTCGGCTTGCGCATTATGCCTCACCGACCGGCTCAA-C
* * * *
22871913 GCTCGCACGCTCATTTCATGGGTTGGCTTAG
127 GCCCGAACGCTCATTTCATGGGCTGACTTAG
22871944 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
22871971 CATATGGAGT
Statistics
Matches: 160, Mismatches: 20, Indels: 9
0.85 0.11 0.05
Matches are distributed among these distances:
156 6 0.04
157 53 0.33
158 95 0.59
159 6 0.04
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGAATCGAACAAGCATTACGGTAGCAAGACCGACA
ACACAGAAGGGGACCAAGCCGATCCTCGGCTTGCGCATTATGCCTCACCGACCGGCTCAACGCCC
GAACGCTCATTTCATGGGCTGACTTAG
Found at i:22872001 original size:26 final size:26
Alignment explanation
Indices: 22871944--22872001 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
22871934 GTTGGCTTAG
*
22871944 GCATACGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
22871970 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
22871996 GCATAT
1 GCATAT
22872002 TTGGATCGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATGTCTAA
Found at i:22872025 original size:188 final size:188
Alignment explanation
Indices: 22871786--22872184 Score: 630
Period size: 188 Copynumber: 2.1 Consensus size: 188
22871776 GCTGACTTAG
* * * *
22871786 GCATACGGAGTTCATTCCCAGTCTAAG---A-TCGAATCGAACTGAGGGTTGTGGTAGCAAGATC
1 GCATATGGAGTTCATTCCTAGTCTAAGCATATTTGGATCGAACTGAGGGTTGTGGTAGCAAGATC
* * *
22871847 GACAGCACACAGGGGGGACCAAGCCGGT-CCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAA
66 GACAGCACACAGGGGGAACCAAGCCGATCCCT-GACTTGCGCATTCTGCCTCTCCGACCGGCTAA
*
22871911 GCGCTCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 GCGCTCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
22871970 GCATATGGAGTTCATTCC-ATGTCTAAGCATATTTGGATCGAACTGAGGGTTGTGGTAGCAAGAT
1 GCATATGGAGTTCATTCCTA-GTCTAAGCATATTTGGATCGAACTGAGGGTTGTGGTAGCAAGAT
* *
22872034 CGACAGCACACAGGGGGAACCGAGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGCCGGCTAA
65 CGACAGCACACAGGGGGAACCAAGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGCTAA
* *
22872099 GCGCTCGCACGCTGATTTCATGGGTTGGCTTAGGCATACAGAGTTTATTCCATGTCTAA
130 GCGCTCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
22872158 GCATATGGAGTTCATTCCTAGTCTAAG
1 GCATATGGAGTTCATTCCTAGTCTAAG
22872185 ATCAGACCGG
Statistics
Matches: 197, Mismatches: 11, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
183 1 0.01
184 24 0.12
187 1 0.01
188 167 0.85
189 4 0.02
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.25
Consensus pattern (188 bp):
GCATATGGAGTTCATTCCTAGTCTAAGCATATTTGGATCGAACTGAGGGTTGTGGTAGCAAGATC
GACAGCACACAGGGGGAACCAAGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGCTAAG
CGCTCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:22872547 original size:26 final size:26
Alignment explanation
Indices: 22872511--22872561 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
22872501 TTGACTTAGG
22872511 CATACGGAGTTCATCCCCAGTCTAAT
1 CATACGGAGTTCATCCCCAGTCTAAT
* *
22872537 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
22872562 GATCGGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAT
Found at i:22873037 original size:158 final size:157
Alignment explanation
Indices: 22872537--22873026 Score: 448
Period size: 158 Copynumber: 3.1 Consensus size: 157
22872527 CCAGTCTAAT
* * * * * * * *
22872537 CATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACGACAGTAGGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTATGGCAGTAGGATCGATAG
* ** * *
22872602 CATGTAGGGGGGATCGGGTGGATCCCCGGCTTGCGCATTCTGCTTCTCC-AACTGGCTGAGCGCT
66 CACGTAGGGGGGATC-GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAAC-GGCTGAGCGCC
* * *
22872666 CGCATG-TCCGTTTCATGGGTTGGCTTAGT
129 CGCACGCT-CGTTTCGTGGGTTGGCTTAGG
** * ** * ** * *
22872695 TTTAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGACCGGT
1 CATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTATGGCAGTAGGATCGAT
* * * * * * * *
22872758 AGCACGCAGAGAGGGATCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGGCTCAACA
64 AGCACGTAG-GGGGGATCG-GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAACGGCTGAGCG
* * * *
22872823 CCCGAACACTCATTTCGTGGGTTGACTTAGG
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* * *
22872854 CATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTTTGGCAGTAGGATCGATGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTATGGCAGTAGGATCGATAG
* * * * **
22872919 CACGTAGGGGGGACCAGGCCGTTCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
66 CACGTAGGGGGGATC-GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAACGGCTGAGCGCCC
*
22872984 GCACGCTCGTTTCGTGGGTTGGCTGAGG
130 GCACGCTCGTTTCGTGGGTTGGCTTAGG
22873012 CATACGGAGTTCATT
1 CATACGGAGTTCATT
22873027 GCATGTCTAA
Statistics
Matches: 255, Mismatches: 68, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
157 3 0.01
158 131 0.51
159 115 0.45
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTATGGCAGTAGGATCGATAG
CACGTAGGGGGGATCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAACGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAGG
Found at i:22873060 original size:26 final size:26
Alignment explanation
Indices: 22873011--22873063 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22873001 GTTGGCTGAG
*
22873011 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
22873037 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
22873063 G
1 G
22873064 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:22879724 original size:26 final size:26
Alignment explanation
Indices: 22879695--22879747 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22879685 GTTGACTTAG
22879695 GCATACGAACTTCATCCCCAATCTAA
1 GCATACGAACTTCATCCCCAATCTAA
* * *
22879721 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAACTTCATCCCCAATCTAA
22879747 G
1 G
22879748 ATCGGATCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACGAACTTCATCCCCAATCTAA
Found at i:22880809 original size:25 final size:25
Alignment explanation
Indices: 22880765--22880823 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
22880755 GTTGACTTAG
22880765 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGA-TTCATCCCCAGTCTAA
*
22880791 GCATACGGATTCATTCCCAGTCTAA
1 GCATACGGATTCATCCCCAGTCTAA
22880816 G-AT-CGGAT
1 GCATACGGAT
22880824 CGGATCGAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
23 5 0.16
24 2 0.06
25 16 0.50
26 9 0.28
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (25 bp):
GCATACGGATTCATCCCCAGTCTAA
Found at i:22881175 original size:159 final size:157
Alignment explanation
Indices: 22880791--22881282 Score: 503
Period size: 159 Copynumber: 3.1 Consensus size: 157
22880781 CCCAGTCTAA
* * *
22880791 GCATACGGA-TTCATTCCCAGTCTAAGATCGGATCGGA-TCGAGGGTTGCGACAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACT-GAGGGTTGCGGCAGCAGGATCGAC
* * * * *
22880854 AGCACGCAGGGGGGACTGGGCCGATCCCCGGCTTGCACATTCTACCTCTCCGGCCGGCTGAGCGC
65 AGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATACCTCTCC-GCCGACTGAGCGC
* * * *
22880919 CCGCATGCCCATTACATGGGTTGGCTTAG
129 CCGCACGCTCATTTCATGGGTTGACTTAG
* * * * * *
22880948 GCATAGGGAGTTCATT-CCATGACTAA-ACCCCAG-TCGGACTGAGGGTTGTGGCAGCGGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGA--TCAGATCGGACTGAGGGTTGCGGCAGCAGGATCG
* * * * * *
22881010 ATAGCACGCAGAGAGGGACCGAGCCAATCCCCGGCTTGCGCATTATGCCTCTCCAGCTGACTCAG
63 ACAGCACGCAG-GGGGGACCGAGCCGATCCCCGGCTTGCGCATTATACCTCTCC-GCCGACTGAG
**
22881075 CGCGTGCACGCTCATTTCATGGGTTGACTTAG
126 CGCCCGCACGCTCATTTCATGGGTTGACTTAG
* * * *
22881107 GCATACGGTGTTCATTCCCAGTCTAAGATCAGACCAGACTGA-GGTTGCGGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGC-GGCAGCAGGATCGAC
* * *
22881171 AGCACGCAGGGGGGATC-AGGCCGATCCCCGGCTTACGCATTCTTACCTCTCCGACCGACTGAGC
65 AGCACGCAGGGGGGACCGA-GCCGATCCCCGGCTTGCGCATT-ATACCTCTCCG-CCGACTGAGC
* * *
22881235 ACCCACACGCTCATTTCATGGGTTGCCTTAG
127 GCCCGCACGCTCATTTCATGGGTTGACTTAG
*
22881266 GCATACAGAGTTCATTC
1 GCATACGGAGTTCATTC
22881283 TGTGTCTAAG
Statistics
Matches: 269, Mismatches: 53, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
157 13 0.05
158 78 0.29
159 174 0.65
160 4 0.01
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATACCTCTCCGCCGACTGAGCGCCC
GCACGCTCATTTCATGGGTTGACTTAG
Found at i:22881315 original size:26 final size:26
Alignment explanation
Indices: 22881266--22881318 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22881256 GTTGCCTTAG
***
22881266 GCATACAGAGTTCATTCTGTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
22881292 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22881318 G
1 G
22881319 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22881492 original size:197 final size:194
Alignment explanation
Indices: 22881162--22881685 Score: 579
Period size: 197 Copynumber: 2.7 Consensus size: 194
22881152 TGCGGGTAGC
* * ** * ** * *
22881162 AGGATCGACAGCACGCAGGGGGGATCAGGCCGATCCCCGGCTTACGCATTCTTACCTCTCCGACC
1 AGGA-CGACAGCACGCAAGGGGGA-CCGAACGATCCCCGACTTGTGCATTC-TGCCTCTCCGGCC
* * * * * * * **
22881227 GACTGAGCACCCACACGCTCATTTCATGGGTTGCCTTAGGCATACAGAGTTCATTCTGTGTCTAA
63 GACTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
22881292 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATC-AAGGGTTGCGACAGTAGGACCAGT
128 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CGAAGGGTTGCGACAGCA-GACCAGC
22881356 AGC-
191 AGCA
* * *
22881359 AGGATCGACAGCACGCAGGGGGGGACCGAACCGATCCCCGACTTGTGTATTCTGCCT-TTCGGTC
1 AGGA-CGACAGCACGCA-AGGGGGACCGAA-CGATCCCCGACTTGTGCATTCTGCCTCTCCGG-C
* * * * *
22881423 GGATTGA-CGCTTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCT
62 CGACTAAGCGC-CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * *
22881487 AAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACGAAGGGTTGCGACAGCAGACGAGC
126 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACGAAGGGTTGCGACAGCAGACCAGC
22881552 AGCA
191 AGCA
* *
22881556 AGGACGACAGCACGCAAGGGGGACTGGACGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGAC
1 AGGACGACAGCACGCAAGGGGGACCGAACGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGAC
* * * *
22881621 TAAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGTGTTTCATTCCATGTCTAAGC
66 TAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TTCATTCCATGTCTAAGC
22881686 TTCAGTCGGA
Statistics
Matches: 277, Mismatches: 41, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
194 65 0.23
195 33 0.12
196 26 0.09
197 129 0.47
198 24 0.09
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (194 bp):
AGGACGACAGCACGCAAGGGGGACCGAACGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGAC
TAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACGAAGGGTTGCGACAGCAGACCAGCAGCA
Found at i:22881499 original size:26 final size:26
Alignment explanation
Indices: 22881463--22881515 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22881453 GTTGGCTTAG
22881463 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
22881489 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
22881515 G
1 G
22881516 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:22882022 original size:707 final size:704
Alignment explanation
Indices: 22880364--22882024 Score: 1754
Period size: 709 Copynumber: 2.3 Consensus size: 704
22880354 TGGTCGGCTG
* * * * * *
22880364 AGCGCCCGCACGCTCATTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGATC
1 AGCGCGCGCACGATCA-TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACATC
** * * * * * * * * *
22880429 GGATCAGACCAAGGGTTGCTG-CAGCAGGATCGACAGCACACAGGGGGGATCGGGTCGATACCCG
65 AAACCAGACCGA-GGTTGCGGAAAGCAGGATCGACAGCACGCAGGAGGGATCAGGCCGATCCCCG
* * * * * * * *
22880493 ACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGTACGCTTGTTTTATAGGTTGGCTTAGG
129 ACTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGCCTTAGG
* *
22880558 CATACGGAGTTCATTCCATGTCTAAGCATA-TAGAGTTCATTCCCAATCTAAGATCAGACCAGAC
194 CATACGAAGTTCATTCCATGTCTAAGCATACT-GAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* ** * * * *
22880622 CGAGGGTTGCGGTAGTAGGACCAGCAGCAGGATCGACAGCACGTAGGGGGATCAGGCTGATCCCC
258 CAAGGGTTGCGACAGTAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGACCAGACCGATCCCC
* *
22880687 GGCTTGCACTTTCTGCCTCTCCGATCGGCCTCTCCGACCAGCTGAGCGCCTGTACGCTCATTTCA
323 GACTTGCACTTTCTGCCTCTCCGATCGGCATCT-CGACCAGCT-AGCGCC--TACGCTCATTTCA
22880752 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGATTCATTCCCAGTCTAAG
384 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGATTCATTCCCAGTCTAAG
* * * *
22880817 ATCGGATCGGATCGAGGGTTGCGACAGTAGGATCGACAGCACGCAGGGGGGACTGGGCCGATCCC
449 ATCGGATCGGATCGAGGGTTGCGACAGGAGGAACGACAGCACGCAAGGGGGACTGGGACGATCCC
* * * *
22880882 CGGCTTGCACATTCTACCTCTCCGGCCGGCTGAGCGCCCGCATGCCCATTACATGGGTTGGCTTA
514 CGACTTGCACATTCTACCTCTCCGGCCGACTAAGCGCCCGCACGCCCATTACATGGGTTGGCTTA
22880947 GGCATAGGGAGTTCATTCCATGACTAAACCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCGAT
579 GGCATAGGGAGTTCATTCCATGACTAAACCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCGAT
* * *
22881012 AGCACGCAGAGAGGGACCGAGCCAATCCCCGGCTTGCGCATTATGCCTCTCCAGCTGACTC
644 AGCACGCAGAGAGGGACCGAGCCAATCCCCGACTTGCACATTAGGCCTCTCCAGCTGACTC
* * * *
22881073 AGCGCGTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGTGTTCATTCCCAGTCTAAGATCA
1 AGCGCGCGCACGATCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACATCA
* * ** * *
22881138 GACCAGACTGAGGTTGCGGGTAGCAGGATCGACAGCACGCAGGGGGGATCAGGCCGATCCCCGGC
66 AACCAGACCGAGGTTGCGGAAAGCAGGATCGACAGCACGCAGGAGGGATCAGGCCGATCCCCGAC
* * * *
22881203 TTACGCATTCTTACCTCTCCGACCGACTGAGCACCCACACGCTCATTTCATGGGTTGCCTTAGGC
131 TTACGCATTC-TGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGCCTTAGGC
** * ** * *
22881268 ATAC-AGAGTTCATTCTGTGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATC
195 ATACGA-AGTTCATTCCATGTCTAAGCATACTGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
*
22881332 AAGGGTTGCGACAGTAGGACCAGTAGCAGGATCGACAGCACGCAGGGGGGGACC-GAACCGATCC
259 AAGGGTTGCGACAGTAGGACCAGCAGCAGGATCGACAGCACGCA--GGGGGACCAG-ACCGATCC
** * * * * *
22881396 CCGACTTG-TGTATTCTGCCT-TTCGGTCGG-AT-T-GA-C-GCT-TCG-C-ACGCTCGTTTCGT
321 CCGACTTGCACT-TTCTGCCTCTCCGATCGGCATCTCGACCAGCTAGCGCCTACGCTCATTTCAT
* * * *
22881451 GGGTTGGCTTAGGCATATGGAGTTCAT-TCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
385 GGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGA-TTCATTCCCAGTCTAA
22881515 GATCGGA-CTGGA-CGAAGGGTTGCGACAGCAGACGAGCAGCAAGGACGACAGCACGCAAGGGGG
448 GATCGGATC-GGATCG-AGGGTTGCG--A-CAG--GAG--G--A--ACGACAGCACGCAAGGGGG
** * * * *
22881578 ACT-GGACGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGACTAAGTGCCCGCACGCCCGTTT
500 ACTGGGACGATCCCCGACTTGCACATTCTACCTCTCCGGCCGACTAAGCGCCCGCACGCCCATTA
* * * * **
22881642 CGTGGGTTGGCTTAGGCATAGGGTGTTTCATTCCATGTCTAAGCTTCAGTCGGACTGAGGGTTGT
565 CATGGGTTGGCTTAGGCATAGGGAG-TTCATTCCATGACTAAACCCCAGTCGGACTGAGGGTTGT
* * * * * * *
22881707 GGCAGC-GGA-CGGTAGCATGCAGAGGGGGACTGGGCCGATCCCCGACTTGCACATTAGGCCTTT
629 GGCAGCGGGACCGATAGCACGCAGAGAGGGACCGAGCCAATCCCCGACTTGCACATTAGGCCTCT
* * *
22881770 TC-GGTCGGCTC
694 CCAGCT-GACTC
*
22881781 AGCGTC-CGCAC-ATGCATTTCATGGG-TGACTTATGCATACGGAGTTCATTCCCAGTCTAACAT
1 AGCG-CGCGCACGAT-CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACAT
* * * ** * * * *
22881843 CAAACCGGACCGAGGGTTG-TGAAAGTAGGATCGGTTAG-ACGTAGGAGGGATCGGGCTGATCCT
64 CAAACCAGACCGA-GGTTGCGGAAAGCAGGATC-GACAGCACGCAGGAGGGATCAGGCCGATCCC
* *
22881906 CGAACTTACGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGTCTT
127 CG-ACTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGCCTT
* * * * *
22881971 AGGCATACGAAATTCATTCCATGTTTACGCGTACTGAGTTCATTTCCAGTCTAA
191 AGGCATACGAAGTTCATTCCATGTCTAAGCATACTGAGTTCATTCCCAGTCTAA
22882025 AATTTTGAGC
Statistics
Matches: 795, Mismatches: 126, Indels: 64
0.81 0.13 0.06
Matches are distributed among these distances:
697 3 0.00
698 53 0.07
699 35 0.04
701 2 0.00
702 5 0.01
704 5 0.01
705 1 0.00
706 3 0.00
707 173 0.22
708 190 0.24
709 227 0.29
710 70 0.09
711 28 0.04
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (704 bp):
AGCGCGCGCACGATCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACATCA
AACCAGACCGAGGTTGCGGAAAGCAGGATCGACAGCACGCAGGAGGGATCAGGCCGATCCCCGAC
TTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGCCTTAGGCA
TACGAAGTTCATTCCATGTCTAAGCATACTGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAA
GGGTTGCGACAGTAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGACCAGACCGATCCCCGAC
TTGCACTTTCTGCCTCTCCGATCGGCATCTCGACCAGCTAGCGCCTACGCTCATTTCATGGGTTG
ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGATTCATTCCCAGTCTAAGATCGGAT
CGGATCGAGGGTTGCGACAGGAGGAACGACAGCACGCAAGGGGGACTGGGACGATCCCCGACTTG
CACATTCTACCTCTCCGGCCGACTAAGCGCCCGCACGCCCATTACATGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGACTAAACCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCGATAGCACGC
AGAGAGGGACCGAGCCAATCCCCGACTTGCACATTAGGCCTCTCCAGCTGACTC
Found at i:22882721 original size:26 final size:26
Alignment explanation
Indices: 22882684--22882736 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22882674 GTTGACTTAG
*
22882684 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
22882710 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
22882736 G
1 G
22882737 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:22883184 original size:157 final size:157
Alignment explanation
Indices: 22882710--22883209 Score: 546
Period size: 159 Copynumber: 3.2 Consensus size: 157
22882700 CCCAGTCTAA
* * *
22882710 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GACAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAA-ATCAAACCAGACCGAGGGTTGCTG-CAGCAGGATCGAC
* * *
22882774 AGCACGCAGGGGGGACCGAGACAATCCCTGGCTTGCGCATTCTGCCTCTCCGGGCGGCTGAGCGC
64 AGCACGCAGGGGGGACCGAGACGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGC
**
22882839 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTTGTTTCGTGGGTTGGCTTAG
* * * ** * *
22882868 GCATAGGGAGTTCATT-CCATGTCTAAACCCCAGTCGGACCGAGGGTTG-TGGCAGC-GAGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAA-TCAAACCAGACCGAGGGTTGCT-GCAGCAG-GATCG
* * * * * *
22882930 ACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTC-TCTGGCCGGCTCA
62 ACAGCACGCAG-GGGGGACCGAGACGATCCCTGGCTTGCGCATTCTGCCTCTTC-GGCCGGCTGA
* **
22882994 GCGCCCGCACGCTTGTTTTGTGGGTTGAATTAG
125 GCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAG
* *
22883027 GCATATGGAGTTCATTCCCAGTCTACAATCAAACCAGACCGAGGGTTGCTGCAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTA-AATCAAACCAGACCGAGGGTTGCTGCAGCAGGATCGACA
* * * ** * *
22883092 GCACGTAGGGGGG-CCGAGTCGATCCCTGACTTATGCATTCTACCTCTTCGACCGGCTGAGCGCC
65 GCACGCAGGGGGGACCGAGACGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCC
* *
22883156 CGCACGCTTGTTTCATTGGTTGGCTTAG
130 CGCACGCTTGTTTCGTGGGTTGGCTTAG
22883184 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22883210 GCATACGGAG
Statistics
Matches: 279, Mismatches: 50, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
156 4 0.01
157 85 0.30
158 60 0.22
159 123 0.44
160 7 0.03
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAATCAAACCAGACCGAGGGTTGCTGCAGCAGGATCGACAG
CACGCAGGGGGGACCGAGACGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCC
GCACGCTTGTTTCGTGGGTTGGCTTAG
Found at i:22883234 original size:26 final size:26
Alignment explanation
Indices: 22883184--22883236 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22883174 GTTGGCTTAG
*
22883184 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
22883210 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
22883236 G
1 G
22883237 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:22883366 original size:184 final size:183
Alignment explanation
Indices: 22883027--22883395 Score: 458
Period size: 184 Copynumber: 2.0 Consensus size: 183
22883017 GTTGAATTAG
* * * *
22883027 GCATATGGAGTTCATTCCCAGTCTACAATCAAACCAGACCGAGGGTTGCTGCAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAATCTACAATCAAACCAGACCGAGAGTTACTGCAGCAGGATCAACA
* * * * *
22883092 GCACGTAGGGGGGCCGAGTCGATCCCTGACTTATGCATTCTACCTCTTCGACCGGCTGAGCGCCC
66 GCACGCAGGGGGGCCGAGTCGATCCCTGACTTACGCATTCTACCTCTTCAACCAGCTGAGCACCC
* *
22883157 GCACGCTTGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
22883210 GCATACGGAGTTCATTCCCAATCTA-AGATCAGACCAGATCGAGAGTTAC-GACAGTAGGATCAG
1 GCATACGGAGTTCATTCCCAATCTACA-ATCAAACCAGACCGAGAGTTACTG-CAGCAGGATCAA
* * ** * * *
22883273 CAGCACGCAGGGGGGATCGGGTCGAT-CCTCGGTTTACGCATTCTGCCT-TTCCAATCAGTTGAG
64 CAGCACGCAGGGGGG-CCGAGTCGATCCCT-GACTTACGCATTCTACCTCTT-CAACCAGCTGAG
*
22883336 CACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
126 CACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
22883394 GC
1 GC
22883396 CCCAGCCGAA
Statistics
Matches: 158, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
182 2 0.01
183 70 0.44
184 86 0.54
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.25
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAATCTACAATCAAACCAGACCGAGAGTTACTGCAGCAGGATCAACA
GCACGCAGGGGGGCCGAGTCGATCCCTGACTTACGCATTCTACCTCTTCAACCAGCTGAGCACCC
GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:22883542 original size:171 final size:170
Alignment explanation
Indices: 22883258--22883566 Score: 465
Period size: 171 Copynumber: 1.8 Consensus size: 170
22883248 TCGAGAGTTA
* * * *
22883258 CGACAGTAGGATCAGCAGCACGCAGGGGGGATCGGGTCGATCCTCGGTTTACGCATTCTGCCTTT
1 CGACAGTAGGATCAGCAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTACGCATTATGCCTCT
* *
22883323 CCAATCAGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
66 CCAACCAGTTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
22883388 GTCTAAGCCCCAGCCGAACCGAGGGTTCTGGTAGTAGGAC
131 GTCTAAGCCCCAGCCGAACCGAGGGTTCTGGTAGTAGGAC
* * * * *
22883428 CGACAGTGGGATCAGCAGCACGTAGAGGGGGATCGGGTTGATCCCCGGCTTGCTCATTATGCCTC
1 CGACAGTAGGATCAGCAGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTACGCATTATGCCTC
** * * *
22883493 TCCGGCCAGTTGAGCGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATGCGGAGTTCATTCCA
65 TCCAACCAGTTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
22883558 TGTCTAAGC
130 TGTCTAAGC
22883567 ATACGGAGTT
Statistics
Matches: 122, Mismatches: 16, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
170 23 0.19
171 99 0.81
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (170 bp):
CGACAGTAGGATCAGCAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTACGCATTATGCCTCT
CCAACCAGTTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
GTCTAAGCCCCAGCCGAACCGAGGGTTCTGGTAGTAGGAC
Found at i:22883575 original size:26 final size:26
Alignment explanation
Indices: 22883539--22883591 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22883529 GTTGGCTTAG
*
22883539 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22883565 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22883591 G
1 G
22883592 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22883752 original size:26 final size:26
Alignment explanation
Indices: 22883723--22883775 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
22883713 GTTGGCTTAG
*
22883723 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTTATTCCCA-GTCTAA
* *
22883749 GCATTCAGAGTTTGTTCCCAGTCTAA
1 GCATACAGAGTTTATTCCCAGTCTAA
22883775 G
1 G
22883776 ATAGAACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACAGAGTTTATTCCCAGTCTAA
Found at i:22883777 original size:184 final size:190
Alignment explanation
Indices: 22883436--22883946 Score: 574
Period size: 184 Copynumber: 2.7 Consensus size: 190
22883426 ACCGACAGTG
* * * *
22883436 GGATCAGCAGCACGTAGAGGGGGA-TCGGGTTGATCCCCGGCTTGCT-CATTATGCCTCTCCGGC
1 GGATCAACAGCACGTA-AGGGGGACT-GGGTCGATCCCCGGCTT-ATGCATTATGCCTCTCCGAC
* * * *
22883499 CAGTTGAGCGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTA
63 CGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
*
22883564 AGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGG-T-T-GT-GG-CAGC-A
128 AGCATACAGAGTTCATTCCCAGTCTAAGAT-AGAACCAGACCGAGGGTTGTAGTAGGACAGCAA
* *
22883621 GGATCAACAGCACGTAAGGGAGACTGGGTCAATCCCCGGCTTATGCATTATGCCTCTCCGACCGG
1 GGATCAACAGCACGTAAGGGGGACTGGGTCGATCCCCGGCTTATGCATTATGCCTCTCCGACCGG
*
22883686 TTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGC
66 TTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* ** ** *
22883751 ATTCAGAGTTTGTTCCCAGTCTAAGATAGAACTGGACTGAGGGTTGCGGTAGTAGGACCAGCAAT
131 ATACAGAGTTCATTCCCAGTCTAAGATAGAACCAGACCGAGGGTT---GTAGTAGGA-CAGC-A-
22883816 A
190 A
* * * * * * * * *
22883817 GGATCGACATCACGTAGGGGGGACCGGGTCGATCCTCGGCTTGTGCATTCTACCTCTCTGACCGG
1 GGATCAACAGCACGTAAGGGGGACTGGGTCGATCCCCGGCTTATGCATTATGCCTCTCCGACCGG
* * * *
22883882 CTGAGCGCCTGCACG-TCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAG
66 TTGAGCGCCCGCACGCT-CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
22883946 C
130 C
22883947 CCCAGCAGGA
Statistics
Matches: 276, Mismatches: 34, Indels: 21
0.83 0.10 0.06
Matches are distributed among these distances:
183 3 0.01
184 133 0.48
185 17 0.06
189 1 0.00
190 2 0.01
191 2 0.01
193 4 0.01
195 1 0.00
196 113 0.41
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (190 bp):
GGATCAACAGCACGTAAGGGGGACTGGGTCGATCCCCGGCTTATGCATTATGCCTCTCCGACCGG
TTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ATACAGAGTTCATTCCCAGTCTAAGATAGAACCAGACCGAGGGTTGTAGTAGGACAGCAA
Found at i:22884052 original size:538 final size:530
Alignment explanation
Indices: 22883027--22884103 Score: 1226
Period size: 538 Copynumber: 2.0 Consensus size: 530
22883017 GTTGAATTAG
*
22883027 GCATATGGAGTTCATTCCCAGTCTACAATCAAACCAGACCGAGGGTTGCTGCAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTACAATCAAACCAGACCGAGGGTTGCTGCAGCAGGATCAACA
* * * * * *
22883092 GCACGTAGGGGGGCCGAGTCGATCCCTGACTTATGCATTCTACCTCTTCGACCGGCTGAGCGCCC
66 GCACGTAGGGAGACCGAGTCAATCCCCGACTTATGCATTATACCTCTCCGACCGGCTGAGCGCCC
* * *
22883157 GCACGCTTGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTT
131 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTT
22883222 CATTCCCAATCTAAGATCAGACCAGATCGAGAGTTACGACAGTAGGATCAGCAGCACGCAGGGGG
196 CATTCCCAATCTAAGATCAGACCAGATCGAGAGTTACGACAGTAGGATCAGCAGCACGCAGGGGG
* * * * * *
22883287 GATCGGGTCGATCCTCGGTTTACGCATTCTGCCTTTCCAATCAGTTGAGCACCCGCACGCTCGTT
261 GACCGGGTCGATCCTCGGCTTACGCATTCTACCTCTCCAACCAGCTGAGCACCCGCACGCTCGTT
* *
22883352 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTCT
326 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCCCCAGCAGAACCGAGGGTTCT
* * * * * *
22883417 GGTAGTAGGACCGACAGTGGGATCAGCAGCACGTAGAGGGGGATCGGGTTGATCCCCGGCTTGCT
391 GGCAGTAGG--CGAC---GCGAT---CAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCA
* * * ** * * *
22883482 CATTATGCCTCTCCGGCCAGTTGAGCGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATGCGG
448 CATTATGCCACTCCGGCCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAAGCATACGG
22883547 AGTTCATT-CCATGTCTAA
513 AGTTCATTCCCA-GTCTAA
*
22883565 GCATACGGAGTTCATTCCCAGTCTA-AGATCAGACCAGACCGAGGGTTG-TGGCAGCAGGATCAA
1 GCATACGGAGTTCATTCCCAGTCTACA-ATCAAACCAGACCGAGGGTTGCT-GCAGCAGGATCAA
* * * * *
22883628 CAGCACGTAAGGGAGACTGGGTCAATCCCCGGCTTATGCATTATGCCTCTCCGACCGGTTGAGCG
64 CAGCACGT-AGGGAGACCGAGTCAATCCCCGACTTATGCATTATACCTCTCCGACCGGCTGAGCG
* * *
22883693 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATTCAGA
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGA
** * * *
22883758 GTTTGTTCCCAGTCTAAGAT-AGAACTGGACTGAGGGTTGCG-GTAG-TAGGACCAGCAATAGGA
193 GTTCATTCCCAATCTAAGATCAG-AC----C--A--GAT-CGAG-AGTTACGA-CAG---TAGGA
* * ** ** *
22883820 TC-GACATCACGTAGGGGGGACCGGGTCGATCCTCGGCTTGTGCATTCTACCTCTCTGACCGGCT
243 TCAG-CAGCACGCAGGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTACCTCTCCAACCAGCT
* * *
22883884 GAGCGCCTGCACG-TCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCC
307 GAGCACCCGCACGCT-CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCC
* ** *
22883948 CCAGCAGGATTGA-GGTTGTGGCAGT-GG-GAC-CGAT-AGCACGCAGAGGGGGACCGGGCTGAT
371 CCAGCAGAACCGAGGGTTCTGGCAGTAGGCGACGCGATCAGCACGCAGAGGGGGACCGGGCTGAT
* ** *
22884008 CCCTGGCTTGCACATTATGCCACTTTGGCCAGCTCAGTGCCCGCACGCTCATTTCATGGGTTGAC
436 CCCCGGCTTGCACATTATGCCACTCCGGCCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGAC
22884073 TTAAGCATACGGAGTTCATTCCCAGTCTAA
501 TTAAGCATACGGAGTTCATTCCCAGTCTAA
22884103 G
1 G
22884104 ATCGGACCGG
Statistics
Matches: 454, Mismatches: 64, Indels: 42
0.81 0.11 0.08
Matches are distributed among these distances:
537 2 0.00
538 169 0.37
539 126 0.28
542 3 0.01
543 1 0.00
545 1 0.00
546 3 0.01
547 7 0.02
548 7 0.02
549 2 0.00
550 12 0.03
551 121 0.27
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (530 bp):
GCATACGGAGTTCATTCCCAGTCTACAATCAAACCAGACCGAGGGTTGCTGCAGCAGGATCAACA
GCACGTAGGGAGACCGAGTCAATCCCCGACTTATGCATTATACCTCTCCGACCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTT
CATTCCCAATCTAAGATCAGACCAGATCGAGAGTTACGACAGTAGGATCAGCAGCACGCAGGGGG
GACCGGGTCGATCCTCGGCTTACGCATTCTACCTCTCCAACCAGCTGAGCACCCGCACGCTCGTT
TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCCCCAGCAGAACCGAGGGTTCT
GGCAGTAGGCGACGCGATCAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCACATTATGC
CACTCCGGCCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAAGCATACGGAGTTCATT
CCCAGTCTAA
Found at i:22884460 original size:26 final size:26
Alignment explanation
Indices: 22884430--22884482 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
22884420 GTTGACTTAG
22884430 GCATACGGAA-TTCA-TCCCTAGTCTAA
1 GCATAC-GAAGTTCATTCCC-AGTCTAA
22884456 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22884482 G
1 G
22884483 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 3 0.12
26 18 0.72
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22884818 original size:159 final size:157
Alignment explanation
Indices: 22884648--22884956 Score: 354
Period size: 158 Copynumber: 1.9 Consensus size: 157
22884638 AAGCCCCAGT
* * * * * * *
22884648 CGGACCGAGGGTTGTGGCAGCGGGA-CCGACAGCACGCAGAGGGGGATCGGGCTGAT-CCTCGAC
1 CGGACCAAGGGTTGCGACAGCAGGATCC-ACAGCACGCAG-GGGGGACCGAGCCGATCCCT-GAC
* * *
22884711 TT-ACGTGTTATGCCTCTTCGGCTGGCTCAGTGCCCGCACGCTCATTTTGTGGGTTAACTTATGC
63 TTCAC-T-TTATGCCTCTTCGGCTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTAACTTAGGC
22884775 AAACGAAGTTCATTCACAGTCTAAGATCAGAC
126 AAACGAAGTTCATTCACAGTCTAAGATCAGAC
* *
22884807 CGGACCAAGGGTTGCGACAGCAGGATCCACAGCACGTAGGGGGGACCGAGCCGATCCCTGGCTTG
1 CGGACCAAGGGTTGCGACAGCAGGATCCACAGCACGCAGGGGGGACCGAGCCGATCCCTGACTT-
* * * ** * *
22884872 CACTTTCTGCCTCTTCGGCTGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATAT
65 CACTTTATGCCTCTTCGGCTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCAAAC
* *
22884937 GGAGTTCATTCCCAGTCTAA
130 GAAGTTCATTCACAGTCTAA
22884957 TATTTTGAGC
Statistics
Matches: 125, Mismatches: 21, Indels: 9
0.81 0.14 0.06
Matches are distributed among these distances:
158 86 0.69
159 35 0.28
160 4 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
CGGACCAAGGGTTGCGACAGCAGGATCCACAGCACGCAGGGGGGACCGAGCCGATCCCTGACTTC
ACTTTATGCCTCTTCGGCTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCAAACG
AAGTTCATTCACAGTCTAAGATCAGAC
Found at i:22885956 original size:158 final size:156
Alignment explanation
Indices: 22885560--22886134 Score: 497
Period size: 159 Copynumber: 3.6 Consensus size: 156
22885550 CCGTTCGATC
* * * * * *
22885560 CCCGACTTGCGCATCCTGCCTCTCTGGTCGGTTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCT
1 CCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCT
* ** * * * **
22885625 TAGGCATACGGAGTTCATTCCATGTCTAAG-CCCTAGCCGGACCGAGGGTTGTGGTAGTGGGACC
66 TAGGCATACGGAGTTCATTCCA-GTCTAAGATCGGA-CCGAACCGAGGGTTGCGATAGCAGGACC
* * * * *
22885689 GGCAGCACACAGACGGGGATCGGGTTGCT
129 GACAGCACGCAG-GGGGGATCGGGTCGGT
* * * * * * * ** * **
22885718 CCCCGGCTTGTGAATTATGCCTCTCAGGCCGGCTCAGCGCCCGCACGCTCGTTTTGTGAGTTGAT
1 -CCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGC
* * * *
22885783 TTAGGCATATGGAGTTCATTCCTAGTCTAAGATCGGACCAAACCGAGGGTTGCGATAGCAAGATC
65 TTAGGCATACGGAGTTCATTCC-AGTCTAAGATCGGACCGAACCGAGGGTTGCGATAGCAGGACC
* *
22885848 GACAGCACGTAGGGGGGATCGAGTCGGT
129 GACAGCACGCAGGGGGGATCGGGTCGGT
** * *
22885876 CCTCGACTTGCGCATTCTGCCTCTCCGGTTGGTTGAGCACCCGCGA-GCTCATTTCATGGGTTGG
1 CC-CGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGC-ACGCTCATTTCATGGGTTGG
*
22885940 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTACGGTAGCAGGAC
64 CTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGAACCGAGGG-T----T-GC--G--
* * *
22886005 CAACAGCAGGACCGACAGCACGCAGGGGGGGACCGGGCCGGT
118 --ATAGCAGGACCGACAGCACGCA-GGGGGGATCGGGTCGGT
* * * *
22886047 CCCTGGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCATGGATTGGC
1 CCC-GACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGC
22886112 TTAGGCATACGGAGTTCATTCCA
65 TTAGGCATACGGAGTTCATTCCA
22886135 TCTCTAAGCC
Statistics
Matches: 328, Mismatches: 68, Indels: 29
0.77 0.16 0.07
Matches are distributed among these distances:
157 2 0.01
158 99 0.30
159 110 0.34
160 3 0.01
163 1 0.00
164 2 0.01
166 1 0.00
170 23 0.07
171 87 0.27
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (156 bp):
CCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCT
TAGGCATACGGAGTTCATTCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGATAGCAGGACCGA
CAGCACGCAGGGGGGATCGGGTCGGT
Found at i:22886131 original size:171 final size:171
Alignment explanation
Indices: 22885847--22886311 Score: 503
Period size: 171 Copynumber: 2.7 Consensus size: 171
22885837 ATAGCAAGAT
* * * * * **
22885847 CGACAGCACGTA-GGGGGGATCGAGTCGGT-CCTCGACTTGCGCATTCTGCCTCTCCGGTTGGTT
1 CGACAGCACGCAGGGGGGGATCGGGCCGGTCCCT-GGCTTGCGCATTATGCCTCTCCGGCCGGTT
* *
22885910 GAGCACCCGCGA-GCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-A
65 GAGCGCCCGC-ACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCC
* * *
22885973 TCGGACCGAA-CTGAGGGTTACGGTAGCAGGACCAACAGCAGGAC
129 CCAG-CCGAATC-GAGGGTTACGGCAGCAGGACCAACAGCAGGAC
* * * *
22886017 CGACAGCACGCAGGGGGGGACCGGGCCGGTCCCTGGCTTGCGCATTTTGCCTCTCCGACCGGCTG
1 CGACAGCACGCAGGGGGGGATCGGGCCGGTCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGTTG
* *
22886082 AGCGCCCGCACGCTCATTTCATGGATTGGCTTAGGCATACGGAGTTCATT-CCATCTCTAAGCCC
66 AGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCCC
* * ** ** *
22886146 CAGCTGGATCGAGGGTTGTGGCAGCAGGACCGGCAGCAGGAT
130 CAGCCGAATCGAGGGTTACGGCAGCAGGACCAACAGCAGGAC
* * *** ** * *
22886188 CGACAACACGCAGAGGGGGATCGGGCTAATCCCCAGCTTGCGCATTATGCCTTTCCGGCCAGTTG
1 CGACAGCACGCAGGGGGGGATCGGGCCGGTCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGTTG
* *
22886253 AGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCTAGTCTA
66 AGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTA
22886312 GGCATACGGA
Statistics
Matches: 246, Mismatches: 41, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
170 16 0.07
171 223 0.91
172 7 0.03
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.22
Consensus pattern (171 bp):
CGACAGCACGCAGGGGGGGATCGGGCCGGTCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGTTG
AGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCC
AGCCGAATCGAGGGTTACGGCAGCAGGACCAACAGCAGGAC
Found at i:22886314 original size:26 final size:26
Alignment explanation
Indices: 22886284--22886337 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
22886274 TGGGTTGACT
22886284 TAGGCATACGGAGTTCA-TCCCTAGTC
1 TAGGCATACGGAGTTCATTCCC-AGTC
22886310 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
22886336 TA
1 TA
22886338 AGATTAGGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:22886822 original size:26 final size:26
Alignment explanation
Indices: 22886786--22886838 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22886776 GTTAGCTTAG
*
22886786 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
22886812 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
22886838 G
1 G
22886839 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:22888275 original size:26 final size:26
Alignment explanation
Indices: 22888223--22888275 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
22888213 GTTGACTTAG
* * *
22888223 GCATACGGAGTTCATCCCTAGTGTAA
1 GCATACAGAGTTCATCCCTAATCTAA
22888249 GCATACAGAGTTCATTCCC-AATCTAA
1 GCATACAGAGTTCA-TCCCTAATCTAA
22888275 G
1 G
22888276 ATCAAACCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:22889706 original size:161 final size:157
Alignment explanation
Indices: 22889316--22889707 Score: 349
Period size: 161 Copynumber: 2.5 Consensus size: 157
22889306 CCCAATCTAA
* * * * * * *
22889316 GCATACGAAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTACGGTAGCAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGGTAGCAAGATCGACA
* * * * * * *
22889381 ACACGCAGGCGGGACTGAGTCGATCCTCGGCTTGCGCATTCTGCCCTCCGATCAGTTGAGCACCT
66 ACACGCAGGCGGGACCGAGCCGATCCTCGGCTCGCGCATTATGCCCTCCGATCAGCTCAGCACCC
*
22889446 GCACGCCCATTTTGTGGGTTGCCTTAG
131 GCACGCCCATTTCGTGGGTTGCCTTAG
* * ** * * * *** *
22889473 GCATAGGGAGTTCATT-CCATGTCAAAGCCCCAG-CCAGA-TCGAGGGTTGTGGCAGTGGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACT-GAGGGTTGCGGTAGCAAGATCG
* * ** *
22889535 ACAGCACGCAGAGGGGGACCGAGCCTCTCCGGTCGGCTCGCGCATTATGCCTCTCCGATCGGCTC
63 ACAACACGCAG-GCGGGACCGAGCCGATCC--TCGGCTCGCGCATTATGCC-CTCCGATCAGCTC
** * *** *
22889600 AGTGCCCGTACGCTTGTTTCGTGGGTTGGCTTAG
124 AGCACCCGCACGCCCATTTCGTGGGTTGCCTTAG
*
22889634 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACTGAGGGTTGCGGTAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGGTAGCAAGATCGACA
22889699 ACACGCAGG
66 ACACGCAGG
22889708 GGACCGGGCC
Statistics
Matches: 174, Mismatches: 51, Indels: 17
0.72 0.21 0.07
Matches are distributed among these distances:
156 3 0.02
157 46 0.26
158 15 0.09
160 21 0.12
161 85 0.49
162 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGGTAGCAAGATCGACA
ACACGCAGGCGGGACCGAGCCGATCCTCGGCTCGCGCATTATGCCCTCCGATCAGCTCAGCACCC
GCACGCCCATTTCGTGGGTTGCCTTAG
Found at i:22889833 original size:26 final size:26
Alignment explanation
Indices: 22889790--22889842 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
22889780 GTTGGCTTAG
* * **
22889790 GCATACGGAGTGCTTTCCTTGTCTAA
1 GCATACCGAGTGCATTCCCAGTCTAA
*
22889816 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTGCATTCCCAGTCTAA
22889842 G
1 G
22889843 ATCAGACTGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACCGAGTGCATTCCCAGTCTAA
Found at i:22890206 original size:26 final size:26
Alignment explanation
Indices: 22890170--22890222 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22890160 GTTAACTTAG
22890170 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
22890196 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22890222 G
1 G
22890223 ATTGGACGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22890383 original size:26 final size:26
Alignment explanation
Indices: 22890354--22890406 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22890344 GTTGGCTTAG
*
22890354 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22890380 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22890406 G
1 G
22890407 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22891431 original size:26 final size:26
Alignment explanation
Indices: 22891379--22891431 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22891369 GTTGGCTTAG
*
22891379 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGGAGTTCATTCCATGTCTAA
22891405 GCATACGGAGTTCATTCTCA-GTCTAA
1 GCATACGGAGTTCATTC-CATGTCTAA
22891431 G
1 G
22891432 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:22894443 original size:23 final size:23
Alignment explanation
Indices: 22894413--22894458 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
22894403 AATGGCAGTC
22894413 TTGCAAGCAACGAGCTCACTGGT
1 TTGCAAGCAACGAGCTCACTGGT
22894436 TTGCAAGCAACGAGCTCACTGGT
1 TTGCAAGCAACGAGCTCACTGGT
22894459 AAGCTCTTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.22
Consensus pattern (23 bp):
TTGCAAGCAACGAGCTCACTGGT
Found at i:22895251 original size:26 final size:26
Alignment explanation
Indices: 22895221--22895273 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22895211 GTTGACTTAG
22895221 GCATACAAACTTCATCCCCAATCTAA
1 GCATACAAACTTCATCCCCAATCTAA
** * *
22895247 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAAACTTCATCCCCAATCTAA
22895273 G
1 G
22895274 ATCGGATCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.30, G:0.11, T:0.25
Consensus pattern (26 bp):
GCATACAAACTTCATCCCCAATCTAA
Found at i:22896294 original size:26 final size:26
Alignment explanation
Indices: 22896244--22896296 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22896234 GTTGGCTTAG
* *
22896244 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
22896270 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
22896296 G
1 G
22896297 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:22896455 original size:196 final size:195
Alignment explanation
Indices: 22895939--22896467 Score: 641
Period size: 197 Copynumber: 2.7 Consensus size: 195
22895929 GAGGGTTGCG
* ** * * *
22895939 GCAGTAGGATCGACAGCACGCAGGGGGGA-TCGGGCCGGTCCCCGGCTTACGCATTCTACCTCTC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACT-GGGCCAATCCCCGACTTGCGCATTCTGCCTCTC
* * * * * * **
22896003 CGACCGACTGAGTACCCACACGCTCGTTTCATGGGTTGCCTTAGGCATACAGAGTTCATTCTGTG
65 CGGCCGATTGAGTGCCCGCACGCTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTTCATTCCATG
** * * * * *
22896068 TCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCAAGGGTTGCGATAGCAGGAC
129 TCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTACGACAGCAGGAC
22896133 CA
194 CA
* * * ** * *
22896135 GTAGCAGGATCGACAGCACACAGGGGGGGACCGAACCAATCCCCGACTTGCGCATTCTGCCTTTT
1 GCAGCAGGATCGACAGCACGCA-GGGGGGACTGGGCCAATCCCCGACTTGCGCATTCTGCCTCTC
* *
22896200 CGGTC-AGTTGAGTGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
65 CGGCCGA-TTGAGTGCCCGCACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCAT
*
22896264 GTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAA-GGTTACGACAGCAGG
128 GTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACC-AAGGGTTACGACAGCAGG
*
22896328 ACGA
192 ACCA
* *
22896332 GCAGCAGGAGCGACAGCACGCAGGGGGGACTGGGCCAATCCCCGACTTGTGCATTCTGCCTCTCC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACTGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCC
* * *
22896397 GGCCGATTGAGTGCCCGCACGCTCGTTCCGTGGGTTAGCTTAGGCATAGGGTGTTCATTCCATGT
66 GGCCGATTGAGTGCCCGCACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATGT
22896462 CTAAGC
130 CTAAGC
22896468 TCCAGCCGGA
Statistics
Matches: 280, Mismatches: 47, Indels: 12
0.83 0.14 0.04
Matches are distributed among these distances:
196 120 0.43
197 157 0.56
198 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (195 bp):
GCAGCAGGATCGACAGCACGCAGGGGGGACTGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCC
GGCCGATTGAGTGCCCGCACGCTCGTTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTACGACAGCAGGACCA
Found at i:22896733 original size:159 final size:159
Alignment explanation
Indices: 22896346--22896779 Score: 441
Period size: 159 Copynumber: 2.7 Consensus size: 159
22896336 CAGGAGCGAC
* * * * *
22896346 AGCACGCAG-GGGGGACTGGGCCAATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGATTGAGTG
1 AGCACGCAGAGGGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCG
* ** * * *
22896410 CCCGCACGCTCGTTCCGTGGGTT-AGCTTAGGCATAGGGTGTTCATTCCATGTCTAAGCTCCAGC
66 CCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACAGAGTTCATTCCATGTCTAAGCTCAAAC
* ** *
22896474 CGGACCGAGGGTTGTGGCAGTGGGACCGGT
130 CAGACCGAGGGTTGTGAAAGTAGGACCGGT
* * * * * * *
22896504 AGCACGCAGAGGGGGACTGGGTCGATCCCCGACTTGCACATTATGCCTTTTCGGTCGGCTCAGCG
1 AGCACGCAGAGGGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCG
* * * * *
22896569 TCCGCACACGCGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAA-CATCAAA
66 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCTAAGC-TCAAA
*
22896632 CCAGACCGAGGGTTGTGAAAGTAGGATCGGT
129 CCAGACCGAGGGTTGTGAAAGTAGGACCGGT
* * * * *
22896663 AGGACGTAGGGGGGGA-TCGGG-CTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAG
1 AGCACGCAGAGGGGGACT-GGGTC-GATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAG
* * *
22896726 CGCCCGCACGCTCGTTTTGTGGGTTGTCTTAGGCATAC-GAAATTCATTCCATGT
64 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCATGT
22896780 TTACGCATAC
Statistics
Matches: 220, Mismatches: 48, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
158 16 0.07
159 200 0.91
160 4 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
AGCACGCAGAGGGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCTCAAACC
AGACCGAGGGTTGTGAAAGTAGGACCGGT
Found at i:22897498 original size:26 final size:26
Alignment explanation
Indices: 22897469--22897521 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22897459 GTTGACTTAG
*
22897469 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
22897495 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
22897521 G
1 G
22897522 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:22898377 original size:26 final size:26
Alignment explanation
Indices: 22898343--22898395 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22898333 GTTGGCTTAG
*
22898343 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22898369 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22898395 G
1 G
22898396 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22899263 original size:26 final size:26
Alignment explanation
Indices: 22899233--22899285 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22899223 GTTGACTTAG
22899233 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
22899259 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22899285 G
1 G
22899286 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22900751 original size:158 final size:158
Alignment explanation
Indices: 22900361--22900782 Score: 443
Period size: 159 Copynumber: 2.7 Consensus size: 158
22900351 ACCCGTTCGA
* * * *
22900361 TCCCCGACTTGCGCATCCTGCCTCTCTGGTCGGTTGAGCGCCCGCACGCTTGTTTGATGGGTTGG
1 TCCCCGACTTGCGCATTCTGCCTCTCAGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
* ** ** * * **
22900426 CTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCTAGCCGGACCGAGGCTTGTGGTAGCGGGA
66 CTTAGGCATACGGAGTTCATTCCA-GTCTAAGATCGGA-CCAAACCGAGGCTTGCGATAGCAAGA
* * *
22900490 CCGGCAGCACACAGACGGGGATCGGGTTGC
129 CCGACAGCACACAGACGGGGATCGAGTCGC
* * * * * * * ** * *
22900520 TCCCCGGCTTGTGCATTATGCCTCTTAGGCCGGCTCAGCGCCCGCACGCTCGTTTTGTGAGTTGA
1 TCCCCGACTTGCGCATTCTGCCTCTCAGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
* * *
22900585 TTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAAACCGAGGGTTGCGATAGCAAGAT
66 CTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCGGACCAAACCGAGGCTTGCGATAGCAAGAC
** * *
22900650 CGACAGCACGTAG-GGGGGATCGAGTCGG
130 CGACAGCACACAGACGGGGATCGAGTCGC
* * * * *
22900678 TCCTCGACTTGCGCATTCTGCCTCTCCGGTCAGTTGAGCACCCGCGCGCTCGTTTCATGGGTTGG
1 TCCCCGACTTGCGCATTCTGCCTCTCAGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
22900743 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
66 CTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGGACC
22900783 GGACTGAGGG
Statistics
Matches: 210, Mismatches: 50, Indels: 7
0.79 0.19 0.03
Matches are distributed among these distances:
158 96 0.46
159 111 0.53
160 3 0.01
ACGTcount: A:0.17, C:0.28, G:0.30, T:0.25
Consensus pattern (158 bp):
TCCCCGACTTGCGCATTCTGCCTCTCAGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
CTTAGGCATACGGAGTTCATTCCAGTCTAAGATCGGACCAAACCGAGGCTTGCGATAGCAAGACC
GACAGCACACAGACGGGGATCGAGTCGC
Found at i:22900794 original size:158 final size:159
Alignment explanation
Indices: 22900361--22900794 Score: 460
Period size: 158 Copynumber: 2.7 Consensus size: 159
22900351 ACCCGTTCGA
* * * *
22900361 TCCCCGACTTGCGCATCCTGCCTCTCTGGTCGGTTGAGCGCCCGCACGCTTGTTTGATGGGTTGG
1 TCCCCGACTTGCGCATTCTGCCTCTCAGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
* ** * * * **
22900426 CTTAGGCATACGGAGTTCATT-CCATGTCTAAG-CCCTAGCCGGACCGAGGCTTGTGGTAGCGGG
66 CTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGCGATAGCAAG
* * *
22900489 ACCGGCAGCACACAGACGGGGATCGGGTTGC
129 ACCGACAGCACACAGACGGGGATCGAGTCGC
* * * * * * * ** * *
22900520 TCCCCGGCTTGTGCATTATGCCTCTTAGGCCGGCTCAGCGCCCGCACGCTCGTTTTGTGAGTTGA
1 TCCCCGACTTGCGCATTCTGCCTCTCAGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
* * ** *
22900585 TTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAAACCGAGGGTTGCGATAGCAAGAT
66 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCAAGAC
** * *
22900650 CGACAGCACGTAG-GGGGGATCGAGTCGG
131 CGACAGCACACAGACGGGGATCGAGTCGC
* * * * *
22900678 TCCTCGACTTGCGCATTCTGCCTCTCCGGTCAGTTGAGCACCCGCGCGCTCGTTTCATGGGTTGG
1 TCCCCGACTTGCGCATTCTGCCTCTCAGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
*
22900743 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTT
66 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
22900795 ACGGTAGTAG
Statistics
Matches: 218, Mismatches: 55, Indels: 5
0.78 0.20 0.02
Matches are distributed among these distances:
158 107 0.49
159 107 0.49
160 4 0.02
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.25
Consensus pattern (159 bp):
TCCCCGACTTGCGCATTCTGCCTCTCAGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCAAGAC
CGACAGCACACAGACGGGGATCGAGTCGC
Found at i:22900932 original size:170 final size:171
Alignment explanation
Indices: 22900685--22901113 Score: 486
Period size: 170 Copynumber: 2.5 Consensus size: 171
22900675 CGGTCCTCGA
* * ** * *
22900685 CTTGCGCATTCTGCCTCTCCGGTCAGTTGAGCACCCGCGCGCTCGTTTCATGGGTTGGCTTAGGC
1 CTTGCGCATTATGCCTCTCCGGCCAACTGAGCACCGGCACGCTCGTTTCATGGGTTGGCTTAGGC
** * * * *
22900750 ATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCGGACTGAGGGTTACGGTAGTAGGACCAGCAG
66 ATACGGAGTTCATTCCCAGTCTAAGCCCCAG-CCGGACCGAGGGTTACGGCAGCAGGACCAGCAG
* * **
22900814 TAGGACCGACAGCATGCAG-GGGGGACCGGGCCGGTCCCTGG
130 CAGGACCGACAGCACGCAGAGGGGGACCGGGCCAATCCCTGG
* * * * *
22900855 CTTGTGCATTTTGCCTCTCCGGCCAACTGAGCATCGGCATGCTCGTTTCATGGATTGGCTTAGGC
1 CTTGCGCATTATGCCTCTCCGGCCAACTGAGCACCGGCACGCTCGTTTCATGGGTTGGCTTAGGC
* * * ** *
22900920 ATACGAAGTTCATT-CCATCTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCAGGACCGGCAG
66 ATACGGAGTTCATTCCCA-GTCTAAGCCCCAGCCGGACCGAGGGTTACGGCAGCAGGACCAGCAG
* * *
22900984 CAGGATCGACAGCACGCAGAGGGGGATCGGGCTAATCCCTGG
130 CAGGACCGACAGCACGCAGAGGGGGACCGGGCCAATCCCTGG
* ** * * *
22901026 CTTGCGCATTATGCCTTTCCGGCCGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGC
1 CTTGCGCATTATGCCTCTCCGGCCAACTGAGCACCGGCACGCTCGTTTCATGGGTTGGCTTAGGC
*
22901091 ATACGGAGTTCATCCCCAGTCTA
66 ATACGGAGTTCATTCCCAGTCTA
22901114 GGCATACGGA
Statistics
Matches: 212, Mismatches: 43, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
169 3 0.01
170 116 0.55
171 90 0.42
172 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (171 bp):
CTTGCGCATTATGCCTCTCCGGCCAACTGAGCACCGGCACGCTCGTTTCATGGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGCCCCAGCCGGACCGAGGGTTACGGCAGCAGGACCAGCAGC
AGGACCGACAGCACGCAGAGGGGGACCGGGCCAATCCCTGG
Found at i:22901116 original size:26 final size:26
Alignment explanation
Indices: 22901086--22901139 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
22901076 TGGGTTGACT
22901086 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
*
22901112 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
22901138 TA
1 TA
22901140 AGATTAGACC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:22901601 original size:158 final size:155
Alignment explanation
Indices: 22901112--22901616 Score: 460
Period size: 158 Copynumber: 3.2 Consensus size: 155
22901102 ATCCCCAGTC
* * *
22901112 TAGGCATACGGAGTTCATTCCCA-GTCTAAGATTAGACCAGACCGAGGGTTGCGACAGCAGGATC
1 TAGGCATACGGAGTTCATT-CCATGTCTAAGATTAGACCGGACCGAGGGTTGTGGCAGCAGGAT-
* * ** * * *
22901176 AGAAGCACGCAAGGGGGACCAGGCCGATCCCCGGCTTGCGCAGTCTACCTCTCCGACCGGCTGAG
64 AGAAGCACG-TAGGGGGACCGGGTTGATCCCCGGCTTGCGCATTCTACCTCTCTGACTGGCTGAG
*
22901241 TGCCCGCACACCCGTTTCGTGGGTTGGCT
128 TGCCCGCACACTCGTTTCGTGGGTT-GCT
* *** * * * * *
22901270 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ATCGGACCGAGGATTGTGGTAGCGGGACC
1 TAGGCATACGGAGTTCATTCCATGTCTAAG-ATTAGACCGGACCGAGGGTTGTGGCAGCAGGA-T
* * * * * * *
22901334 AGCAGCACGTAGAGGAGGACCGGGTTCATCCCTGTCTTGCGCATTATACCTCTTTGACCT-GCTC
64 AGAAGCACGTAG-GG-GGACCGGGTTGATCCCCGGCTTGCGCATTCTACCTCTCTGA-CTGGCTG
* * *
22901398 AATGCCCACACACTCATTTCGTGGGTTGACT
126 AGTGCCCGCACACTCGTTTCGTGGGTTG-CT
* * * * * * * *
22901429 TATGTATACAGAGTTCTTTCC-TAGTCTAAGATTGGACCGGATCGAGGGTTGTGGCACCAGGATT
1 TAGGCATACGGAGTTCATTCCAT-GTCTAAGATTAGACCGGACCGAGGGTTGTGGCAGCAGGATA
* * * * *
22901493 GATAACACATATGGGGGATCGGGTTGATCCCCGGCTTGCACATTCTGCCTCTCTGACTGGCTGAG
65 GA-AGCACGTA-GGGGGACCGGGTTGATCCCCGGCTTGCGCATTCTACCTCTCTGACTGGCTGAG
*
22901558 TGCCCGCACACTCGTTTCGTGTGTTAGCT
128 TGCCCGCACACTCGTTTCGTGGGTT-GCT
22901587 TAGGCATACGGAGTTCATTCCATGTCTAAG
1 TAGGCATACGGAGTTCATTCCATGTCTAAG
22901617 CATACGGAGT
Statistics
Matches: 266, Mismatches: 67, Indels: 28
0.74 0.19 0.08
Matches are distributed among these distances:
157 7 0.03
158 143 0.54
159 114 0.43
160 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.25
Consensus pattern (155 bp):
TAGGCATACGGAGTTCATTCCATGTCTAAGATTAGACCGGACCGAGGGTTGTGGCAGCAGGATAG
AAGCACGTAGGGGGACCGGGTTGATCCCCGGCTTGCGCATTCTACCTCTCTGACTGGCTGAGTGC
CCGCACACTCGTTTCGTGGGTTGCT
Found at i:22901626 original size:26 final size:26
Alignment explanation
Indices: 22901590--22901642 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22901580 GTTAGCTTAG
*
22901590 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
22901616 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
22901642 G
1 G
22901643 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:22902349 original size:26 final size:26
Alignment explanation
Indices: 22902312--22902364 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22902302 GTTGACTTAG
* *
22902312 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAATCTAA
*
22902338 GCATATGAAGTTCATTCCCAATCTAA
1 GCATATGAAGTTCATCCCCAATCTAA
22902364 G
1 G
22902365 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAATCTAA
Found at i:22902696 original size:159 final size:157
Alignment explanation
Indices: 22902346--22902822 Score: 375
Period size: 159 Copynumber: 3.0 Consensus size: 157
22902336 AAGCATATGA
* * ** ** * * * *
22902346 AGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTACGGTAGCAAGATCGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGTGGCAGCAGGACCGACAACACGCAG
* * * * * * * * * * * * * *
22902411 GCGGGACTGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCTGCACGCC
66 GGGGGACCGGGCCAATCCCCGGCTTGCGCAATATACCTCTCCGACCGGCTCAG-GCCGGCACGCT
* ** * *
22902476 CATTTTGTGGGTTGCCTTAGGCATAGGG
130 CGTTTCATGGGTTGGCTTAGGCATACGG
** * * * ** *
22902504 AGTTCATT-CCATGT-TGAAGCCCCCG-CCAGACCGAGGGTTGTGGCAGTGGGACCGACAGCACG
1 AGTTCATTCCCA-GTCT-AAG-ATCAGATCAAACCGAGGGTTGTGGCAGCAGGACCGACAACACG
* * * * * * ** *
22902566 CAGAGGGGGATCGGGCCAATCCTCGGCTTGTGCATTATGCCTCTTCGGTCGGCTCAGTGCCGGTA
63 CAG-GGGGGACCGGGCCAATCCCCGGCTTGCGCAATATACCTCTCCGACCGGCTCAG-GCCGGCA
* *
22902631 CGCTTGTTTCGTGGGTTGGCTTAGGCATACGG
126 CGCTCGTTTCATGGGTTGGCTTAGGCATACGG
* *
22902663 AGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGTGGTAGCAGGATCGACAACACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGTGGCAGCAGGACCGACAACACGCAG
* * * * * *
22902728 GGGGGACCGGGTCGATCCCCGGCTTGCGCAATCTACCTCTCCGACCTGCTGAGGCCTGCACGCTC
66 GGGGGACCGGGCCAATCCCCGGCTTGCGCAATATACCTCTCCGACCGGCTCAGGCCGGCACGCTC
22902793 GTTTCATGGGTTGGCTTAGGCATACGG
131 GTTTCATGGGTTGGCTTAGGCATACGG
22902820 AGT
1 AGT
22902823 GCTTTCCTTG
Statistics
Matches: 251, Mismatches: 61, Indels: 15
0.77 0.19 0.05
Matches are distributed among these distances:
157 42 0.17
158 85 0.34
159 120 0.48
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGTGGCAGCAGGACCGACAACACGCAG
GGGGGACCGGGCCAATCCCCGGCTTGCGCAATATACCTCTCCGACCGGCTCAGGCCGGCACGCTC
GTTTCATGGGTTGGCTTAGGCATACGG
Found at i:22902855 original size:26 final size:26
Alignment explanation
Indices: 22902812--22902864 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
22902802 GTTGGCTTAG
* * **
22902812 GCATACGGAGTGCTTTCCTTGTCTAA
1 GCATACCGAGTGCATTCCCAGTCTAA
*
22902838 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTGCATTCCCAGTCTAA
22902864 G
1 G
22902865 ATCAGACTGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACCGAGTGCATTCCCAGTCTAA
Found at i:22903230 original size:26 final size:26
Alignment explanation
Indices: 22903192--22903244 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22903182 GTTGACTTAG
*
22903192 GCATACAGCGTTCATCCCCAGCCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
* * *
22903218 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
22903244 G
1 G
22903245 ATTGGACGAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGCCTAA
Found at i:22903412 original size:26 final size:26
Alignment explanation
Indices: 22903376--22903428 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22903366 GTTGGCTTAG
*
22903376 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22903402 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22903428 G
1 G
22903429 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22904432 original size:26 final size:26
Alignment explanation
Indices: 22904396--22904446 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
22904386 TGACTTAGGT
22904396 ATACGAAGTTCATT-CCATGTCTAAGC
1 ATACGAAGTTCATTCCCA-GTCTAAGC
*
22904422 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
22904447 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:22911450 original size:159 final size:158
Alignment explanation
Indices: 22911225--22911823 Score: 593
Period size: 159 Copynumber: 3.8 Consensus size: 158
22911215 GTAGGATCAA
* * * * *
22911225 CAGCACGCA-AGGGGGATTGGGCCAATCCCCGGCTTGTGCATTCTACCTCTCCGACCGGCTAAGC
1 CAGCACGCAGAGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTAAGC
* *
22911289 GCCCGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAGCCCCAAC
66 GCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC
*
22911354 TGGATCGAGGGCTGTGGCAGCGGGATCGG
131 TGGA-CGAGGGTTGTGGCAGCGGGATCGG
* * * * *
22911383 CAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGTGCATTAC-GCCTCTCCGGCTGGCTCAG
1 CAGCACGCAGAGGGGGATCGGGCCAATCCCCGGCTTGCGCATT-CTGCCTCTCCGGCTGGCTAAG
* * * * **
22911447 CGCCCGCACGCTCATTTCATGGGTTGACTTAGACATATGGAGTTCATTCCCA-GTCTAAG-ATCA
65 CGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCA
** * * * * *
22911510 GA-TCAAACCAAGGATTGTAGCAGCAGGATCGA
129 -ACT-GGA-CGAGGGTTGTGGCAGCGGGATCGG
** * * * * *
22911542 CAGCACGCAG-GGGGGATC-GAACAGATCTCTGGCTTACGCATTCTGCCTCTCCGGTTGGCTGAG
1 CAGCACGCAGAGGGGGATCGGGCCA-ATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTAAG
* * * * * * *
22911605 CGCCCACATGCCCGTTTCGTGGGTTGTCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAG
65 CGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA
* * *
22911670 CTGGACTGAGAGTTGTGGCAGTGGGACCGG
130 CTGGAC-GAGGGTTGTGGCAGCGGGATCGG
* * * * *
22911700 TAGCACGTAGAGGGGGATCGGGCCAATCCCCGACTTGCGCATTCTGCCTCT-CGGGTCGGTTAAG
1 CAGCACGCAGAGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGCT-GGCTAAG
* * * *
22911764 CGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 CGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
22911824 ATGCAGAGTT
Statistics
Matches: 351, Mismatches: 76, Indels: 27
0.77 0.17 0.06
Matches are distributed among these distances:
157 7 0.02
158 124 0.35
159 213 0.61
160 7 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
CAGCACGCAGAGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTAAGC
GCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC
TGGACGAGGGTTGTGGCAGCGGGATCGG
Found at i:22911751 original size:317 final size:317
Alignment explanation
Indices: 22911163--22911822 Score: 790
Period size: 317 Copynumber: 2.1 Consensus size: 317
22911153 CCAATCTAAG
* * ** * * * * *
22911163 CATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGTAGGATCAACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCAAGGATTGCAGCAGCAGGATCAACAG
* ** **
22911228 CACGCAAGGGGGATTGGGCCAATCCCCGGCTTGTGCATTCTACCTCTCCGACCGGCTAAGCGCCC
66 CACGCAAGGGGGATTCGAACAATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTAAGCGCCC
* * *
22911293 GCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAGCCCCAACTGGA
131 ACATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAACTGGA
* * * * *
22911358 TCGAGGGCTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGTGC
196 TCGAGAGCTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCAGGCCAATCCCCGACTTGCGC
*
22911423 ATTACGCCTCTCCGGCT-GGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGA
261 ATTACGCCTCT-CGGCTCGGCTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGA
* * *
22911480 CATATGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCAAGGATTGTAGCAGCAGGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCAAGGATTGCAGCAGCAGGATCAACAG
* * * * *** *
22911545 CACGCAGGGGGGA-TCGAACAGATCTCTGGCTTACGCATTCTGCCTCTCCGGTTGGCTGAGCGCC
66 CACGCAAGGGGGATTCGAACA-ATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTAAGCGCC
* * * *
22911609 CACATGCCCGTTTCGTGGGTTGTCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCTGG
130 CACATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAACTGG
* * * * * *
22911674 A-CTGAGAGTTGTGGCAGTGGGACCGGTAGCACGTAGAGGGGGATCGGGCCAATCCCCGACTTGC
195 ATC-GAGAGCTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCAGGCCAATCCCCGACTTGC
* * * * * *
22911738 GCATT-CTGCCTCTCGGGTCGGTTAAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGG
259 GCATTAC-GCCTCTCGGCTCGGCTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGA
22911797 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
22911823 CATGCAGAGT
Statistics
Matches: 287, Mismatches: 51, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
316 13 0.05
317 274 0.95
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (317 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCAAGGATTGCAGCAGCAGGATCAACAG
CACGCAAGGGGGATTCGAACAATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTAAGCGCCC
ACATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAACTGGA
TCGAGAGCTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCAGGCCAATCCCCGACTTGCGC
ATTACGCCTCTCGGCTCGGCTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGA
Found at i:22912041 original size:26 final size:26
Alignment explanation
Indices: 22911993--22912043 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
22911983 GTTCACTTAG
* *
22911993 GCATACGGAGTTTATCCTTAGTCTAA
1 GCATACGGAGTTCATCCTCAGTCTAA
22912019 GCATACGGAGTTCATTCC-CAGTCTA
1 GCATACGGAGTTCA-TCCTCAGTCTA
22912044 CGATTGGACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAGTCTAA
Found at i:22912227 original size:26 final size:26
Alignment explanation
Indices: 22912191--22912267 Score: 118
Period size: 26 Copynumber: 3.0 Consensus size: 26
22912181 TTAACTTAGA
*
22912191 CATACGAAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
22912217 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
** *
22912243 CATATAGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
22912268 TATCAGATCG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.26
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:22912549 original size:157 final size:157
Alignment explanation
Indices: 22912285--22912742 Score: 361
Period size: 158 Copynumber: 2.9 Consensus size: 157
22912275 TCGAACCGAG
* * * ** * ** * *
22912285 GGTTGCGGCAACAAGATCGACAGCACACAAGGGGGACTGGGTC-ATTCCCTGGCTTGCACATTTT
1 GGTTGCGGTAACAGGACCGACAGCACGGAAAGGGGACTGGGTCGA-TCCCCAGCTTGCGCATTAT
* ** * * * * ** * *
22912349 GCCTCTTCGAACGGTTGAGCGCCTGCACGAC-CATTTCGCGGGTTAGCTTTGGCATAGGGAGTTC
65 GCCTCTCCGGCCGGCTCAGCACCCGCACG-CTCATTTCATGGGTT-GCTTAGGCATACGGAGTTC
*
22912413 ATTCCATGTCTAAGCCTAG-CCGGAAC-AA
128 ATTCCATGTCTAAGCCTAGACCAGAACGAA
* * * * * *
22912441 GGTTGTGGTAACAGGACCGGCAGCACGCGAAGGGGGATTGGG-CTGATCCTCAGCTTGTGCATTA
1 GGTTGCGGTAACAGGACCGACAGCACG-GAAAGGGGACTGGGTC-GATCCCCAGCTTGCGCATTA
* *
22912505 TGCCTCTCCGGTCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTA
64 TGCCTCTCCGGCCGGCTCAGCACCCGCACGCTCATTTCATGGGTTG-CTTAGGCATACGGAGTTC
** * * * *
22912570 ATTCTCA-GTCTAAGATTGGATCAGATCGAG
128 ATTC-CATGTCTAAGCCTAGACCAGAACGAA
* * * * * *
22912600 GGTTGCGGTAGCAGGATCGATAGCACGTAAAGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTG
1 GGTTGCGGTAACAGGACCGACAGCACGGAAAGGGGACTGGGTCGATCCCCAGCTTGCGCATTATG
* * * ** * *
22912665 CCTCTCTGGCCGGCTGAGCGCTTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCAT
66 CCTCTCCGGCCGGCTCAGCACCCGCACGCTCATTTCATGGGTT-GCTTAGGCATACGGAGTTCAT
22912730 TCCATGTCTAAGC
130 TCCATGTCTAAGC
22912743 ATTCAGAGTT
Statistics
Matches: 236, Mismatches: 55, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
156 24 0.10
157 88 0.37
158 99 0.42
159 25 0.11
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (157 bp):
GGTTGCGGTAACAGGACCGACAGCACGGAAAGGGGACTGGGTCGATCCCCAGCTTGCGCATTATG
CCTCTCCGGCCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGCTTAGGCATACGGAGTTCATT
CCATGTCTAAGCCTAGACCAGAACGAA
Found at i:22912749 original size:26 final size:26
Alignment explanation
Indices: 22912715--22912767 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22912705 GTTGGCTTAG
22912715 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
* *
22912741 GCATTCAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
22912767 G
1 G
22912768 ATTGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:22912984 original size:197 final size:197
Alignment explanation
Indices: 22912641--22912996 Score: 491
Period size: 197 Copynumber: 1.8 Consensus size: 197
22912631 GGGGACTGGG
* * * * **
22912641 TCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCTTGCACGCTCGTTTCATGGG
1 TCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGACGACTAAGCACCCGCACGCTCGTTTCATGGG
* * * * *
22912706 TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATTCAGAGTTCATTCCCTGTCTAAGATT
66 TTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
* ** * * *
22912771 GGATTGGACGGAGGGTTGCGGCAGCAGGACCAGTAGTAGGATCGGCAGCATGCAGGGGTGGACCG
131 AGACCGGACCGAGGGTTACGACAGCAGGACCAGTAGTAGGATCGGCAGCATGCAGGGGTGGACCG
22912836 AT
196 AT
* *
22912838 TCGATCCCCGGCTTGCGCATTCTGCCTCTC-GGAATGACTAAGCACCCGCACGCTCGTTTTATGG
1 TCGATCCCCGGCTTGCGCATTCTGCCTCTCTGG-ACGACTAAGCACCCGCACGCTCGTTTCATGG
**
22912902 GTTGACTTAGGCATATGGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
65 GTTGACTTAGGCATACAGAGTTCAT-CCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
22912966 TCAGACCGGACCGAGGGTTACGACAGCAGGA
129 TCAGACCGGACCGAGGGTTACGACAGCAGGA
22912997 TCGGCAGCAC
Statistics
Matches: 136, Mismatches: 21, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
196 2 0.01
197 131 0.96
198 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (197 bp):
TCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGACGACTAAGCACCCGCACGCTCGTTTCATGGG
TTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
AGACCGGACCGAGGGTTACGACAGCAGGACCAGTAGTAGGATCGGCAGCATGCAGGGGTGGACCG
AT
Found at i:22913291 original size:26 final size:26
Alignment explanation
Indices: 22913255--22913323 Score: 138
Period size: 26 Copynumber: 2.7 Consensus size: 26
22913245 GTTGGCTTAG
22913255 GCATACGGAGTTCATTCAATGTCTAA
1 GCATACGGAGTTCATTCAATGTCTAA
22913281 GCATACGGAGTTCATTCAATGTCTAA
1 GCATACGGAGTTCATTCAATGTCTAA
22913307 GCATACGGAGTTCATTC
1 GCATACGGAGTTCATTC
22913324 CCAATCTAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCAATGTCTAA
Found at i:22914039 original size:26 final size:26
Alignment explanation
Indices: 22914002--22914054 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22913992 GTTGACTTAG
*
22914002 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
22914028 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
22914054 G
1 G
22914055 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:22920287 original size:26 final size:26
Alignment explanation
Indices: 22920244--22920296 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
22920234 GTTGGCTTAG
* * **
22920244 GCATACGGAGTGCTTTCCTTGTCTAA
1 GCATACCGAGTGCATTCCCAGTCTAA
*
22920270 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTGCATTCCCAGTCTAA
22920296 G
1 G
22920297 ATCAGACTGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACCGAGTGCATTCCCAGTCTAA
Found at i:22920659 original size:26 final size:26
Alignment explanation
Indices: 22920623--22920675 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22920613 GTTAACTTAG
22920623 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
22920649 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22920675 G
1 G
22920676 ATTGGACGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22920838 original size:26 final size:26
Alignment explanation
Indices: 22920809--22920861 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22920799 GTTGGCTTAG
*
22920809 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22920835 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22920861 G
1 G
22920862 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.