Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 225 of 402
Found at i:22921847 original size:158 final size:159
Alignment explanation
Indices: 22921503--22921866 Score: 416
Period size: 158 Copynumber: 2.3 Consensus size: 159
22921493 TCTCAGTTCA
* * *
22921503 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCGAGGGTA
* ** * * * * **
22921568 GTGGTAGCGGGACTGACAGCACACAGAGGGGGACCTGGCCAATCCCTGGCTTATGCATTATGCCT
66 GCGACAGCAGGACTGACAGCACACAGAGGGGGACCTGACCAATCCCTAGCTTACGCATTATAACT
*
22921633 CTTCGGTCGACTCAGCGCCCGCATGCTCG
131 CTCCGGTCGACTCAGCGCCCGCATGCTCG
* * * * *
22921662 TTTCGTGGGTTGACTTATGCATGCGGAGTTCATTCCCA-GTCTAA-CATCAGACCGGACTGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCGGACCGAGGG
* * * *
22921725 TTA-CGACAGCAGGA-TCGACAGCACACAG-GGGGGATC-GAACCGATCCCTAGCTTGCGCATTC
64 -TAGCGACAGCAGGACT-GACAGCACACAGAGGGGGACCTG-ACCAATCCCTAGCTTACGCATTA
* * *
22921786 TAACTCTCCGGTCGGCTGAGCGCCTGCATGCTCG
126 TAACTCTCCGGTCGACTCAGCGCCCGCATGCTCG
22921820 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
22921867 TACGGAGTTC
Statistics
Matches: 170, Mismatches: 28, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
157 4 0.02
158 94 0.55
159 67 0.39
160 5 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCGAGGGTA
GCGACAGCAGGACTGACAGCACACAGAGGGGGACCTGACCAATCCCTAGCTTACGCATTATAACT
CTCCGGTCGACTCAGCGCCCGCATGCTCG
Found at i:22921867 original size:26 final size:26
Alignment explanation
Indices: 22921838--22921890 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22921828 GTTGGCTTAG
22921838 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22921864 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22921890 G
1 G
22921891 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22928890 original size:159 final size:159
Alignment explanation
Indices: 22928657--22929262 Score: 532
Period size: 159 Copynumber: 3.8 Consensus size: 159
22928647 TGCGGTAGTA
* * ** * * * *
22928657 GGATCAGCAGCACGC-AAGGGGGATTGGGCCAATCCCCGGCTTGTGCATTCTACCTCTCCGACCG
1 GGATCGGCAGCACGCTGAGGGGGACCGAGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGGCTG
* * * *
22928721 GCTAAACGCCCGCATGCCCATTTCATGGGTTCG-CTTAGGCATAGGGAGTTCATTCCATGTGTAA
66 GCTGAGCGCCCGCACGCCCATTTCATGGGTT-GACTTAGGCATAGGGAGTTCATTCCATGTCTAA
22928785 GCCCCAACTGGACCGAGGGTTGTAGCAGCG
130 GCCCCAACTGGACCGAGGGTTGTAGCAGCG
* * *
22928815 GGATCGGCAGCACGCTGAGGGGGACC-AGGCCGATCCCCGGCTTGTGCATTAC-GCCTCTCCGGC
1 GGATCGGCAGCACGCTGAGGGGGACCGA-GCCAATCCCCGGCTTGCGCATT-CTACCTCTCCGGC
* * * *
22928878 TGGCTCAGCGCCCGCACGCTCATTTCATTGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCT
64 TGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATT-CCATGTCT
** * * *
22928942 AAG-ATCAGA-TCGAACCGAGGATTGTAGCAGCA
128 AAGCCCCA-ACT-GGACCGAGGGTTGTAGCAGCG
* * * ** * * * * * *
22928974 GGATCGACAGCACGCAG-GGGGGACCGAACTGATCTCTGGCTTACGCATTCTGCCTTTCCGGTTG
1 GGATCGGCAGCACGCTGAGGGGGACCGAGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGGCTG
* * * * *
22929038 GGTGAGCGCCCGCATGCCCATTTCGTGGGTTGTCTTAGGCATAGGGAGGTCATTCCATGTCTAAG
66 GCTGAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAG
* * * * *
22929103 CCCCAGCTGGACTGAGAGTTGTGGCAGTG
131 CCCCAACTGGACCGAGGGTTGTAGCAGCG
* * * * *
22929132 GGA-CTGGTAGCACGCAT-AGGGGGATCGCGCCAATCCCCGACTAGCGCATTCTACCTCT-CGGC
1 GGATC-GGCAGCACGC-TGAGGGGGACCGAGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGGC
* * * * * * * *
22929194 TCGGTTGAGCGCTCGCACGCTCGTTTCATTGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCT
64 T-GGCTGAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCT
22929259 AAGC
128 AAGC
22929263 ATGCAGAGTT
Statistics
Matches: 355, Mismatches: 77, Indels: 31
0.77 0.17 0.07
Matches are distributed among these distances:
157 5 0.01
158 134 0.38
159 212 0.60
160 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GGATCGGCAGCACGCTGAGGGGGACCGAGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGGCTG
GCTGAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAG
CCCCAACTGGACCGAGGGTTGTAGCAGCG
Found at i:22929079 original size:158 final size:158
Alignment explanation
Indices: 22928869--22929263 Score: 240
Period size: 158 Copynumber: 2.5 Consensus size: 158
22928859 TGCATTACGC
* * * *
22928869 CTCTCCGGCTGGCTCAGCGCCCGCACGCTCATTTCATTGGTTGACTTAGGCATATGGAGTTCATT
1 CTCTCCGGCTGGCTCAGCGCCCGCATGCCCATTTCATGGGTTG-CTTAGGCATAGGGAGTTCATT
*
22928934 CCCA-GTCTAAG-ATCAGA-TCGAACCGAGGATTGTAGCAGCAGGATCGACAGCACGCAG-GGGG
65 -CCATGTCTAAGCACCA-ACT-GAACCGAGGATTGTAGCAGCAGGATCGACAGCACGCAGAGGGG
* * *
22928995 GACC-GAACTGATCTCTGGCTTACGCATT-CTGC
127 GACCAG-ACCGATCCCCGGCTTACGCATTAC-GC
* * * * * *
22929027 CTTTCCGGTTGGGTGAGCGCCCGCATGCCCATTTCGTGGGTTGTCTTAGGCATAGGGAGGTCATT
1 CTCTCCGGCTGGCTCAGCGCCCGCATGCCCATTTCATGGGTTG-CTTAGGCATAGGGAGTTCATT
* * * * * ** ** *
22929092 CCATGTCTAAGCCCCAGCTGGACTGA-GAGTTGTGGCAGTGGGA-CTGGTAGCACGCATAGGGGG
65 CCATGTCTAAGCACCAACTGAACCGAGGA-TTGTAGCAGCAGGATC-GACAGCACGCAGAGGGGG
* * *
22929155 ATCGC-G-CCAATCCCCGAC-TAGCGCATT-CTAC
128 A-C-CAGACCGATCCCCGGCTTA-CGCATTAC-GC
* * * * * * * * *
22929186 CTCT-CGGCTCGGTTGAGCGCTCGCACGCTCGTTTCATTGGTTGGCTTAGTCATACGGAGTTCAT
1 CTCTCCGGCT-GGCTCAGCGCCCGCATGCCCATTTCATGGGTT-GCTTAGGCATAGGGAGTTCAT
22929250 TCCATGTCTAAGCA
64 TCCATGTCTAAGCA
22929264 TGCAGAGTTC
Statistics
Matches: 185, Mismatches: 41, Indels: 21
0.75 0.17 0.09
Matches are distributed among these distances:
157 6 0.03
158 92 0.50
159 83 0.45
160 2 0.01
161 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (158 bp):
CTCTCCGGCTGGCTCAGCGCCCGCATGCCCATTTCATGGGTTGCTTAGGCATAGGGAGTTCATTC
CATGTCTAAGCACCAACTGAACCGAGGATTGTAGCAGCAGGATCGACAGCACGCAGAGGGGGACC
AGACCGATCCCCGGCTTACGCATTACGC
Found at i:22929468 original size:26 final size:26
Alignment explanation
Indices: 22929431--22929483 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22929421 GTTCACTTAG
*
22929431 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGAAGTTCATTCC-CAGTCTAA
22929457 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22929483 G
1 G
22929484 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22929657 original size:26 final size:26
Alignment explanation
Indices: 22929628--22929679 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
22929618 GTTAACTTAG
22929628 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
22929654 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
22929680 TATCAGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:22929761 original size:197 final size:197
Alignment explanation
Indices: 22929391--22929764 Score: 480
Period size: 197 Copynumber: 1.9 Consensus size: 197
22929381 CCTCTTCGAC
* * * *
22929391 CGACTGAGCGCCCGCACGCTCCTTTCGTGGGTTCACTTAGGCATACGGAGTTCATCCTCAGTCTA
1 CGACTGAGCACCCGCACGCTCCTTTCGTGGGTTAACTTAGGCATACGAAGTTCATCCCCAGTCTA
** * * * * * *
22929456 AGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGGCAGTAGGACCAGC
66 AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCAAGACCAGC
* * * ** *
22929521 AGTACGCAGGGGGGATTGGGCCGCTCCCCAGCTTGCGCATTTTGCCTCTCCAGCCGTCATTTCTG
131 AGCACACAAGGGGGACCGGGCCGCTCCCCAGCTTGCACATTTTGCCTCTCCAGCCGTCATTTCTG
22929586 AT
196 AT
* *
22929588 CGACTGAGCACCCGCATGCTCGTTTCGTGGGTTAACTTAGGCATACGAAGTTCATCCCCAGTCTA
1 CGACTGAGCACCCGCACGCTCCTTTCGTGGGTTAACTTAGGCATACGAAGTTCATCCCCAGTCTA
* * *
22929653 AGCATACGAAGTTCATTCCCAGTCTAATATCAGACC-GAACCAAGGGTTACGACAGCAAGATCGG
66 AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCAAGGGTTACGACAGCAAGACCAG
* * * **
22929717 TAGCACACAAGGGGGACCGGGTCGTTCCCTGGCTTGCACATTTTGCCT
130 CAGCACACAAGGGGGACCGGGCCGCTCCCCAGCTTGCACATTTTGCCT
22929765 TTTCGAACGG
Statistics
Matches: 148, Mismatches: 28, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
196 1 0.01
197 147 0.99
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24
Consensus pattern (197 bp):
CGACTGAGCACCCGCACGCTCCTTTCGTGGGTTAACTTAGGCATACGAAGTTCATCCCCAGTCTA
AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCAAGACCAGC
AGCACACAAGGGGGACCGGGCCGCTCCCCAGCTTGCACATTTTGCCTCTCCAGCCGTCATTTCTG
AT
Found at i:22929962 original size:158 final size:158
Alignment explanation
Indices: 22929654--22930157 Score: 380
Period size: 158 Copynumber: 3.2 Consensus size: 158
22929644 CCCAGTCTAA
* * * ** * * * *
22929654 GCATACGAAGTTCATTCCCA-GTCTAA-TATCAGACCGAACCAAGGGTTACGACAGCAAGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCATCAGACCGGACCAAGGGTTGTGGCAGCAGGACCGA
* ** * * * * * * * * * *
22929717 TAGCACACAAGGGGGACCGGGTCGTTCCCTGGCTTGCACATTTTGCCTTTTC-GAACGGTTGAGC
65 CAGCACGGAAGGGGGACCGGCTCGATCCCCGGCTTGCACATTATACCTCTCCGGCA-GGCTCAGC
* *
22929781 GCCCGCACGCCCA-TTC-TGCGGGTTAGCTTTG
129 GCCCGCACGCTCATTTCAT--GGGTT-GCTTAG
* *
22929812 GCATAGGGAGTTCATTCCATGTCTAAGCCT-AG-CCGGACCAAGGGTTGTGGCAGCAGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCATCAGACCGGACCAAGGGTTGTGGCAGCAGGACCGAC
* ** ** * *
22929875 AGCACGCGAAGGGGGATCTGGCT-GATCCTTGGCTTGTGCATTATGCCTCTCCGGTAGGCTCAGC
66 AGCACG-GAAGGGGGA-CCGGCTCGATCCCCGGCTTGCACATTATACCTCTCCGGCAGGCTCAGC
22929939 GCCCGCACGCTCATTTCATGGGTTGACTTAG
129 GCCCGCACGCTCATTTCATGGGTTG-CTTAG
* * * *** *
22929970 GCATACGGAGTTAATTCTCA-GTCTAAG-ATCGGATCGGATTGAGGGTTGTGGCAGCAGGATCGA
1 GCATACGGAGTTCATTC-CATGTCTAAGCATCAGACCGGACCAAGGGTTGTGGCAGCAGGACCGA
* * * * * * * *
22930033 TAGCACGTAAGGGGGACCGGGTCGATCCCCGGCTTGCACTTTCTACCTCTCTGGCCGGCTGAGCG
65 CAGCACGGAAGGGGGACCGGCTCGATCCCCGGCTTGCACATTATACCTCTCCGGCAGGCTCAGCG
** * *
22930098 CTTGCACGTTCGTTTCATGGGTTGGCTTAG
130 CCCGCACGCTCATTTCATGGGTT-GCTTAG
22930128 GCATACGGAGTTCATTCCATGTCTAAGCAT
1 GCATACGGAGTTCATTCCATGTCTAAGCAT
22930158 TCGGAGTTCA
Statistics
Matches: 274, Mismatches: 57, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
157 39 0.14
158 188 0.69
159 46 0.17
160 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCATCAGACCGGACCAAGGGTTGTGGCAGCAGGACCGAC
AGCACGGAAGGGGGACCGGCTCGATCCCCGGCTTGCACATTATACCTCTCCGGCAGGCTCAGCGC
CCGCACGCTCATTTCATGGGTTGCTTAG
Found at i:22930361 original size:26 final size:26
Alignment explanation
Indices: 22930325--22930377 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22930315 GTTGACTTAG
*
22930325 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22930351 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22930377 G
1 G
22930378 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22936286 original size:26 final size:26
Alignment explanation
Indices: 22936250--22936302 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22936240 GTTGACTTAG
22936250 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
22936276 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22936302 G
1 G
22936303 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22936577 original size:159 final size:157
Alignment explanation
Indices: 22936276--22936660 Score: 441
Period size: 159 Copynumber: 2.4 Consensus size: 157
22936266 CCCAGTCTAA
* * ** *
22936276 GCATACGGAGTTCATTTCCAGTCTAAGAT-CGGATCGGACCGAGGGTTACGACAGCAGGATCGAT
1 GCATACGGAGTTCA-TTCCAGTCTAAGCTCCAG-TCGGACCGAGGGTTGTGGCAGCAGGATCGAT
* * * * *
22936340 AGCATACAGGGGGGACTGGGCCGATCTCCGGCTTACGCATTCTGCCTCTCTGACCGAATGAGCAC
64 AGCATACAGAGGGGACTGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGAATAAGCAC
*
22936405 CCGTACGCCCGTTTCATGGGTTGGCTTAG
129 CCGCACGCCCGTTTCATGGGTTGGCTTAG
* *
22936434 GCATA-GAGAGTTCATTCCATGTCTAAGCTCCAGTCGGACCGAGGGTTGTGGCAGCGGGATCGGT
1 GCATACG-GAGTTCATTCCA-GTCTAAGCTCCAGTCGGACCGAGGGTTGTGGCAGCAGGATCGAT
* * * * ** *
22936498 AGCTTGCAGAAGGGGATTGGGCCGATCCCCGGCTTTCGCATTCTACCTCTCCGACCGGTTAAGCG
64 AGCATACAG-AGGGGACTGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGAATAAGCA
* *
22936563 CTCGCACGCTCGTTTCATGGGTTGGCTTAG
128 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
* ** * * * *
22936593 GCATACGGAGTTCATTCCACGTCTAAGCCCCAACCGGATCGAGGGTTGTGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCA-GTCTAAGCTCCAGTCGGACCGAGGGTTGTGGCAGCAGGATCGATA
22936658 GCA
65 GCA
22936661 GGATCGACAG
Statistics
Matches: 189, Mismatches: 33, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
157 6 0.03
158 53 0.28
159 129 0.68
160 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGCTCCAGTCGGACCGAGGGTTGTGGCAGCAGGATCGATAG
CATACAGAGGGGACTGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGAATAAGCACCC
GCACGCCCGTTTCATGGGTTGGCTTAG
Found at i:22936665 original size:12 final size:12
Alignment explanation
Indices: 22936648--22936672 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22936638 TTGTGGTAGT
22936648 AGGATCGACAGC
1 AGGATCGACAGC
22936660 AGGATCGACAGC
1 AGGATCGACAGC
22936672 A
1 A
22936673 CACAGAGGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.24, G:0.32, T:0.08
Consensus pattern (12 bp):
AGGATCGACAGC
Found at i:22936813 original size:26 final size:26
Alignment explanation
Indices: 22936777--22936829 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22936767 GTTGACTTAG
22936777 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
22936803 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22936829 G
1 G
22936830 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22937120 original size:26 final size:26
Alignment explanation
Indices: 22937090--22937142 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22937080 GTTGACTTAG
*
22937090 GCATACAGTGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
22937116 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22937142 G
1 G
22937143 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22937499 original size:158 final size:159
Alignment explanation
Indices: 22937309--22937617 Score: 352
Period size: 158 Copynumber: 1.9 Consensus size: 159
22937299 AGCTCCAGCT
* ** * ** *
22937309 AGACCGAGGGTTGTGGCAGCTGGATCGGCAGCACGCAGAG-GGGGGTCGGGCCGATCCCCGGCTT
1 AGACCGAGGGTTGTGGCAGCAGGATCAACAGCACACAG-GTGGGGACCAGGCCGATCCCCGGCTT
* ** * * * *
22937373 ACGTATTATACCTCTCCAG-CGGCTCAACGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATA
65 ACGCATTATACCTCTCCAGCCCACTCAACGCACGTACGCTTATTCCATGGGTTGACTTAGGCATA
*
22937437 CTAAGTTCATTCCCAGTCTAAGATTGGATC
130 CGAAGTTCATTCCCAGTCTAAGATTGGATC
* * * *
22937467 AGACCGAGGGTTGTGGCAGCAGGATTAACAGCACACAGGTGGGGACCAGGTCGGTCCCCGGCTTG
1 AGACCGAGGGTTGTGGCAGCAGGATCAACAGCACACAGGTGGGGACCAGGCCGATCCCCGGCTTA
* * * * *
22937532 CGCATTCTGCCTCTCCAGCCCACTGACCGCACGTACGCTTATTCCATGGGTTGGCTTAGGCATAC
66 CGCATTATACCTCTCCAGCCCACTCAACGCACGTACGCTTATTCCATGGGTTGACTTAGGCATAC
* **
22937597 GGAGTTCATTCCTTGTCTAAG
131 GAAGTTCATTCCCAGTCTAAG
22937618 CATACGGAGT
Statistics
Matches: 122, Mismatches: 27, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
157 1 0.01
158 67 0.55
159 54 0.44
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
AGACCGAGGGTTGTGGCAGCAGGATCAACAGCACACAGGTGGGGACCAGGCCGATCCCCGGCTTA
CGCATTATACCTCTCCAGCCCACTCAACGCACGTACGCTTATTCCATGGGTTGACTTAGGCATAC
GAAGTTCATTCCCAGTCTAAGATTGGATC
Found at i:22937564 original size:497 final size:497
Alignment explanation
Indices: 22937006--22937955 Score: 1118
Period size: 497 Copynumber: 1.9 Consensus size: 497
22936996 GCATGTAGAA
* * * * ** * * *
22937006 GGGGACCGGGTCAGTCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGA-GCGCCCGCACGCT
1 GGGGACCAGGTCAGTCCCCGGCTTGCGCATTCTGCCTCTCCAGCCCACTGACCCGCACGTACGCT
* * * *
22937070 CGTTTCATGGGTTGACTTAGGCATACAGTGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCT
66 -ATTCCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
* * *
22937135 AGTCTAAGATCGGACCAGATCGAGCATTGCGGTAGCAGGATCGACAGCACGCAGGAGG-GACCGG
130 AGTCTAAGATCGAACCAGACCGAGCATT----TAGCAAGATCGACAGCACGCAGG-GGAGACCGG
* * * * * * * * * * *
22937199 GCCGATCCCTAGCTTGCGCATTTTGCCTTTTCGGTCGGCTGAGCGCCCGCACACCCGTTTCGTGT
190 GCCGATCCCCAGCTTACGCATTCTACCTCTACAGTCGGCTGAGCACCCGCACACCCATTTCATGG
* * *
22937264 GTTGGCTTAGGCATAGGGAGTTCATTAAATGTCTAAGCTCCAGCTAGACCGAGGGTTGTGGCAGC
255 GTTGGCTTAGGCATACGGAGTTCATTAAATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGC
* * * * * * * * * *
22937329 TGGATCGGCAGCACGCAGAGGGGGGTCGGGCCGATCCCCGGCTTACGTATTATACCTCTCC-AGC
320 GGGATCGGCAACACGCAGAAGGGGATCGAGCC-AACCCCAGCTTACGCAGTATACCTCTCCGACC
* * * *
22937393 GGCTCAACGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACTAAGTTCATTCCCA-GTCTA
384 GACTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATT-CCATGTCTA
22937457 AGATTGGATCAGACCGAGGGTTGTGGCAGCAGGATTAACAGCACACAGGT
448 AGATTGGATCAGACCGAGGGTTGTGGCAGCAGGATTAACAGCACACAGGT
*
22937507 GGGGACCAGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCAGCCCACTGA-CCGCACGTACGCT
1 GGGGACCAGGTCAGTCCCCGGCTTGCGCATTCTGCCTCTCCAGCCCACTGACCCGCACGTACGC-
* * * **
22937571 TATTCCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAGCATACGGAGTTCATTCCC
65 TATTCCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
* * ** * * *
22937636 AGTCTAAGATCGAATCGGACCGAGGGTTTAGCAAGATTGGCAGCACGCAGGGGAGATCGGGCCGA
130 AGTCTAAGATCGAACCAGACCGAGCATTTAGCAAGATCGACAGCACGCAGGGGAGACCGGGCCGA
* * * *
22937701 TCCCCGGCTTACGCATTCTACCTCTACAGTTGGCTGAGCACCTGCACACCTATTTCATGGGTTGG
195 TCCCCAGCTTACGCATTCTACCTCTACAGTCGGCTGAGCACCCGCACACCCATTTCATGGGTTGG
* ** *
22937766 CTTAGGCATTCGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGAT
260 CTTAGGCATACGGAGTTCATTAAATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGAT
* * * * * *
22937831 CTGTAACACGCAGAAGGGGATCGAGCCAACCCCAGCTTGCGCAGTCTGCCTCTCCGACCGACTGA
325 CGGCAACACGCAGAAGGGGATCGAGCCAACCCCAGCTTACGCAGTATACCTCTCCGACCGACTCA
* * *
22937896 ACGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
390 ACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAG
22937956 CATACGAAGT
Statistics
Matches: 371, Mismatches: 74, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
496 26 0.07
497 214 0.58
501 130 0.35
502 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (497 bp):
GGGGACCAGGTCAGTCCCCGGCTTGCGCATTCTGCCTCTCCAGCCCACTGACCCGCACGTACGCT
ATTCCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCGAACCAGACCGAGCATTTAGCAAGATCGACAGCACGCAGGGGAGACCGGGCCGAT
CCCCAGCTTACGCATTCTACCTCTACAGTCGGCTGAGCACCCGCACACCCATTTCATGGGTTGGC
TTAGGCATACGGAGTTCATTAAATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGATC
GGCAACACGCAGAAGGGGATCGAGCCAACCCCAGCTTACGCAGTATACCTCTCCGACCGACTCAA
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGATTGGA
TCAGACCGAGGGTTGTGGCAGCAGGATTAACAGCACACAGGT
Found at i:22937620 original size:26 final size:26
Alignment explanation
Indices: 22937591--22937643 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22937581 GTTGGCTTAG
**
22937591 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22937617 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22937643 G
1 G
22937644 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22937979 original size:26 final size:26
Alignment explanation
Indices: 22937929--22937981 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22937919 GTTGGCTTAG
* *
22937929 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
22937955 GCATACGAAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
22937981 G
1 G
22937982 ATCACCGCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:22938463 original size:26 final size:26
Alignment explanation
Indices: 22938433--22938483 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
22938423 GTTGACTTAG
22938433 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
22938459 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAATCTA
22938484 TGATCGAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:22938854 original size:26 final size:26
Alignment explanation
Indices: 22938824--22938876 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22938814 GTTGACTTAG
*
22938824 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
22938850 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22938876 G
1 G
22938877 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22941574 original size:158 final size:156
Alignment explanation
Indices: 22941162--22941600 Score: 450
Period size: 159 Copynumber: 2.8 Consensus size: 156
22941152 GTAGGATCGG
* * * * * *
22941162 CAGCACGCAGGGGGGATCTGGGCGATCCCTGACTTATGCATTCTTCGTCTCCGGCCGGCTGAGCG
1 CAGCACGTAGGGGGGATC-GGGCGATCCCTGGCTTGTGCATTATGCCTCTCCGGCC-GCTGAGCG
* * *
22941227 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
64 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCC
* * * **
22941292 GGACCGAGGGTTGTGGCAGCAAGACCGG
129 GGACCGAAGGTTGTGACAACAAGACCAA
* * * * * *
22941320 CAGCACGTAGAGGGGGACCGGGCCGATCCTTGGCTCGAGCATTATGCCTCTCCGGTCAGCTCAGC
1 CAGCACGTAG-GGGGGATCGGG-CGATCCCTGGCTTGTGCATTATGCCTCTCCGG-CCGCTGAGC
* * * **
22941385 GTCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAG-ATTAG
63 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG
* * * *
22941448 ACTGGATCGAAGGTTGTGACAATAAGATCAA
127 -CCGGACCGAAGGTTGTGACAACAAGACCAA
* * *
22941479 TAGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCAGCCGCTTGAGCG
1 CAGCACGTAGGGGGGATCGGG-CGATCCCTGGCTTGTGCATTATGCCTCTCCGGCCGC-TGAGCG
* * ** *
22941544 CCCGCATGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAG
64 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
22941601 AAAACAGAGT
Statistics
Matches: 228, Mismatches: 46, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
157 5 0.02
158 102 0.45
159 117 0.51
160 4 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (156 bp):
CAGCACGTAGGGGGGATCGGGCGATCCCTGGCTTGTGCATTATGCCTCTCCGGCCGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGG
ACCGAAGGTTGTGACAACAAGACCAA
Found at i:22941954 original size:159 final size:158
Alignment explanation
Indices: 22941741--22942114 Score: 448
Period size: 158 Copynumber: 2.4 Consensus size: 158
22941731 CGACCGAGCA
* * * *
22941741 CCCGCACGC-CAATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA-TTCCTAG
1 CCCGCACGCTC-ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGGTCCGA-
* * * *
22941804 TCGGTCTGAGGGTTGTGGCAGCAGGACCGATAGCACGTAGAAGGGGACCGGGCCGATCCCCGACT
64 TCGGACTGAGGGTTGCGGCAGCAGGACCGACAGCACGCAG-AGGGGACCGGGCCGATCCCCGACT
* * *
22941869 TGCACATTATGCCTCTCT-AGCTGGCTCAACG
128 TACACATTATGCCTCTCTGATC-GACTCAACG
* * * *
22941900 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCCGTCTAAGGTCGGATC
1 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGGTCCGATC
* * * * * *
22941965 GGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTAC
66 GGACTGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGGGGACCGGGCCGATCCCCGACTTAC
* *
22942030 ACATTCTGCCTCTCTGATCGACTGAACG
131 ACATTATGCCTCTCTGATCGACTCAACG
* * * *
22942058 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCTATGTCTAAG
1 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAG
22942115 CATACGGAGT
Statistics
Matches: 182, Mismatches: 30, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
158 93 0.51
159 85 0.47
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGGTCCGATC
GGACTGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGGGGACCGGGCCGATCCCCGACTTAC
ACATTATGCCTCTCTGATCGACTCAACG
Found at i:22941956 original size:514 final size:512
Alignment explanation
Indices: 22941154--22942343 Score: 1408
Period size: 514 Copynumber: 2.3 Consensus size: 512
22941144 TTGCAGTAGT
* * * * * * * * *
22941154 AGGATCGGCAGCACGCAGGGGGGATCTGGGCGATCCCTGACTTATGCATTCTTCGTCTCCGGCCG
1 AGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCCGGGCTTGTGCATTCTGCCTCTCCGGCCG
22941219 GCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
66 GCTGAGCGCCCGCACG-CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
* * * * *
22941284 CCCCAGCCGGACCGAGGGTTGTGGCAGCAAGACCGGCAGCACGTAGAGGGGGACCGGGCCGATCC
130 CCCCAGCCGGTCTGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAAGGGGACCGGGCCGATCC
** * * * * * *
22941349 TTGGCTCGAGCATTATGCCTCTCCGGTCAGCTCAGCGTCCGCACGCTCGTTTCATGGGTTGACTT
195 CCGACTCGAGCATTATGCCTCTCAGCTCAGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTT
* * * *
22941414 AGGCATATGGAGTTCATTCCCAGTCTAAGATTAGA-CTGGA-TCGAAGGTTGTGACAATAAGATC
260 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACT-GAAGGTTGCGACAACAAGATC
* * ***
22941477 AATAGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCAG-CCG-CTTG
323 AACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTACACATTATGCCTCT-CAGACCGAC-TG
* * *
22941540 AGCGCCCGCATGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATT-TCATGTCTAAGAAA
386 AACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCT-ATGTCTAAGAAA
* * * * *
22941604 ACAGAGTTCATTCCTAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGACCAGCAGC
450 ACAGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGCGTTGTCGCAGCAAGACCAGCAGC
*
22941667 AGGATCGACAGCACGCAAAGGGGGACCAGGTCGATCCCGGGCTTGTGCATTCTGCCTCTCCGGCC
1 AGGATCGACAGCACGC-AGGGGGGACCAGGTCGATCCCGGGCTTGTGCATTCTGCCTCTCCGGCC
* * * * *
22941732 GACCGAGCACCCGCACGCCAATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
65 GGCTGAGCGCCCGCACGCC-GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
** * * *
22941797 TTCCTAGTCGGTCTGAGGGTTGTGGCAGCAGGACCGATAGCACGTAGAAGGGGACCGGGCCGATC
129 GCCCCAGCCGGTCTGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAAGGGGACCGGGCCGATC
* *
22941862 CCCGACTTGCA-CATTATGCCTCTCTAGCT-GGCTCAACGCCCGCACGCTCATTTCATGGGTTGA
194 CCCGACTCG-AGCATTATGCCTCTC-AGCTCAGCTCAACGCCCGCACGCTCATTTCATGGGTTGA
* * * * ** * *
22941925 CTTAGGCATACGGAGTTCATTCCCCGTCTAAGGTCGGATCGGACTGAGGGTTGCGGTAGCAGGAT
257 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAAGGTTGCGACAACAAGAT
* * * *
22941990 CGACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTACACATTCTGCCTCTCTGATCGACTGA
322 CAACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTACACATTATGCCTCTCAGACCGACTGA
* * * *
22942055 ACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCTATGTCTAAGCATAC
387 ACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGAAAAC
* * * * * *
22942120 GGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGCGTTGTCGTAGCAAGACCAGCAGT
452 AGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGCGTTGTCGCAGCAAGACCAGCAGC
* * *** *
22942181 AGGATCGATAGCACGCAGGGGGTGACCGGGTCGATCCCCGGG-TTGCATATTCTGCCTCTCCAGC
1 AGGATCGACAGCACGCAGGGGG-GACCAGGTCGAT-CCCGGGCTTGTGCATTCTGCCTCTCCGGC
* * ** * *
22942245 CGGTTGAGTGCCCATACGCTCGTTTCATGGGTTGGCTTAGGGATACGGAGTTCATTCCATGTCTA
64 CGGCTGAGCGCCCGCACGC-CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
*
22942310 AGCCCCAGCCCGGT-TGAGGGTTGTGGCAACAGGA
128 AGCCCCAG-CCGGTCTGAGGGTTGTGGCAGCAGGA
22942344 TTGGCAGTGG
Statistics
Matches: 567, Mismatches: 97, Indels: 25
0.82 0.14 0.04
Matches are distributed among these distances:
513 24 0.04
514 525 0.93
515 18 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (512 bp):
AGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCCGGGCTTGTGCATTCTGCCTCTCCGGCCG
GCTGAGCGCCCGCACGCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
CCCAGCCGGTCTGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAAGGGGACCGGGCCGATCCC
CGACTCGAGCATTATGCCTCTCAGCTCAGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAAGGTTGCGACAACAAGATCAAC
AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTACACATTATGCCTCTCAGACCGACTGAACGC
CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGAAAACAGAG
TTCATTCCCAATCTAAGATCAGACCGAACCGAGCGTTGTCGCAGCAAGACCAGCAGC
Found at i:22942087 original size:158 final size:158
Alignment explanation
Indices: 22941662--22942114 Score: 498
Period size: 159 Copynumber: 2.9 Consensus size: 158
22941652 AGCAGGACCA
* * * **
22941662 GCAGCAGGATCGACAGCACGCAAAGGGGGACCAGGTCGATCCCGGGCTTGTGCATTCTGCCTCTC
1 GCAGCAGGATCGACAGCACGC-AGGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTC
* * * * * * *
22941727 CGGCCGACCGAGCACCCGCACGC-CAATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
65 TGACCGACTGAACGCCCGCACGCTC-ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAC
* * * *
22941791 GTCTAATTCCTAGTCGGTCTGAGGGTTGTG
129 GTCTAAGTCCGAGTCGGACTGAGGGTTGCG
* * * * * * *
22941821 GCAGCAGGACCGATAGCACGTAGAAGGGGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTC
1 GCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTC
* * * * * *
22941886 T-AGCTGGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCC
65 TGA-CCGACTGAACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAC
*
22941950 GTCTAAGGTCGGA-TCGGACTGAGGGTTGCG
129 GTCTAA-GTCCGAGTCGGACTGAGGGTTGCG
* * *
22941980 GTAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTACACATTCTGCCTCTCT
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCT
* * * * *
22942045 GATCGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCTATGT
66 GACCGACTGAACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGT
22942110 CTAAG
131 CTAAG
22942115 CATACGGAGT
Statistics
Matches: 238, Mismatches: 51, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 93 0.39
159 140 0.59
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCT
GACCGACTGAACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGT
CTAAGTCCGAGTCGGACTGAGGGTTGCG
Found at i:22943567 original size:26 final size:26
Alignment explanation
Indices: 22943537--22943589 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22943527 GTTGACTTAG
*
22943537 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
22943563 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22943589 G
1 G
22943590 ACCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22944100 original size:26 final size:26
Alignment explanation
Indices: 22944050--22944102 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22944040 GTTGGCTTAG
*
22944050 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
22944076 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
22944102 G
1 G
22944103 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:22944462 original size:26 final size:26
Alignment explanation
Indices: 22944433--22944483 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
22944423 TGACTTAGGT
22944433 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
22944459 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
22944484 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:22944758 original size:158 final size:158
Alignment explanation
Indices: 22944457--22944957 Score: 483
Period size: 158 Copynumber: 3.2 Consensus size: 158
22944447 CCCAGTCTAA
* * * * * **
22944457 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACTGGACCAAGGGTTGC-G-AAGCAAGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCGAACCAAGGGTTACGGCAA-CAGGATCAA
* * * * * * * *
22944519 CAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCCGTCTCTCCGATCGGTTGAGCG
64 CAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCAACCGGCTGAGCG
*
22944584 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * ** * *
22944614 GCATAGGGAGTTCATTCCATGTCTTAGCCCCAG-CCGAACCAAGGGTTGTGGCAACGGGA-CGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCGAACCAAGGGTTACGGCAACAGGATCAAC
* * * * * *
22944677 AGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCAACCGGGTCAGTG
65 AGCACGCAG-GGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCAACCGGCTGAGCG
* *
22944742 CCCGCACGCTCATTTCGTGGGTTGACTTAT
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * * **
22944772 GCAAACGGAGTTCATTCC-TAGTCTAAGATCAGATCGGAGCGAGGGTTACGGTAGTAGGATCAAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGACCAGACCGAACCAAGGGTTACGGCAACAGGATCAAC
* * * * *
22944836 AGCACGTAGGGGGGGATCGGGTCGATCCTCGACTTGCGCATTCTACCTCTCCAGCCAGCTGAGCG
65 AGCACGCA-GGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCAACCGGCTGAGCG
*
22944901 CCCGCACGCTCATTTCATGGGTTGGCTTAG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
*
22944931 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
22944958 CATATGGAGT
Statistics
Matches: 276, Mismatches: 58, Indels: 18
0.78 0.16 0.05
Matches are distributed among these distances:
156 3 0.01
157 50 0.18
158 114 0.41
159 107 0.39
160 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCGAACCAAGGGTTACGGCAACAGGATCAACA
GCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCAACCGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:22947476 original size:26 final size:26
Alignment explanation
Indices: 22947398--22947476 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
22947388 CTTGACTTAG
*
22947398 GCATACGGAGTTCATCCCCA-GTCTAA
1 GCATACGGAGTTCAT-TCCATGTCTAA
*
22947424 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
* *
22947450 GCATACGGAGTTCATTTCTTGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
22947476 G
1 G
22947477 ATTGGACCGG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 3 0.06
26 44 0.94
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:22947794 original size:26 final size:26
Alignment explanation
Indices: 22947716--22947794 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
22947706 CTTGACTTAG
*
22947716 GCATACGGAGTTCATCCCCA-GTCTAA
1 GCATACGGAGTTCAT-TCCATGTCTAA
*
22947742 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
* *
22947768 GCATACGGAGTTCATTTCTTGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
22947794 G
1 G
22947795 ATTGGACCGG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 3 0.06
26 44 0.94
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:22947904 original size:318 final size:318
Alignment explanation
Indices: 22947322--22947936 Score: 1185
Period size: 318 Copynumber: 1.9 Consensus size: 318
22947312 GGTGTCTCCG
* *
22947322 GTTCAATCCCCGACTTATGCATCCTGCCTCTCTGGTCGGCTGAGTGCCCGTACGCTCATTTCGTG
1 GTTCAATCCCCGACTTACGCATCCTGCCTCTCTGGTCAGCTGAGTGCCCGTACGCTCATTTCGTG
22947387 GCTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCATGTTTAAGC
66 GCTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCATGTTTAAGC
*
22947452 ATACGGAGTTCATTTCTTGTCTAAGATTGGACCGGATCGAGTGTTACGGCAGTAGGATCGGCAAC
131 ATACGGAGTTCATTTCTTGTCTAAGATTGGACCGGATCGAGGGTTACGGCAGTAGGATCGGCAAC
22947517 ACGTAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCG
196 ACGTAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCG
22947582 CACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTGCTCGAACCCACCTACCACTC
261 CACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTGCTCGAACCCACCTACCACTC
* *
22947640 GTTCGATCCCCGACTTACGCATCCTGCCTCTCTGGTCAGCTGAGTGCCCGTACGCTCGTTTCGTG
1 GTTCAATCCCCGACTTACGCATCCTGCCTCTCTGGTCAGCTGAGTGCCCGTACGCTCATTTCGTG
22947705 GCTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCATGTTTAAGC
66 GCTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCATGTTTAAGC
22947770 ATACGGAGTTCATTTCTTGTCTAAGATTGGACCGGATCGAGGGTTACGGCAGTAGGATCGGCAAC
131 ATACGGAGTTCATTTCTTGTCTAAGATTGGACCGGATCGAGGGTTACGGCAGTAGGATCGGCAAC
22947835 ACGTAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCG
196 ACGTAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCG
22947900 CACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGT
261 CACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGT
22947937 TCATTCTATG
Statistics
Matches: 292, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
318 292 1.00
ACGTcount: A:0.18, C:0.28, G:0.28, T:0.26
Consensus pattern (318 bp):
GTTCAATCCCCGACTTACGCATCCTGCCTCTCTGGTCAGCTGAGTGCCCGTACGCTCATTTCGTG
GCTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCATGTTTAAGC
ATACGGAGTTCATTTCTTGTCTAAGATTGGACCGGATCGAGGGTTACGGCAGTAGGATCGGCAAC
ACGTAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCG
CACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTGCTCGAACCCACCTACCACTC
Found at i:22948069 original size:159 final size:159
Alignment explanation
Indices: 22947843--22948271 Score: 490
Period size: 159 Copynumber: 2.7 Consensus size: 159
22947833 ACACGTAGGG
* * ** *
22947843 GGGATCGGGCCGA-TCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGCCC
1 GGGACCGGGCCGATTCC-CGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCACCCGCACGCTC
* *
22947907 ATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAG-CCGGACCAAGGG
65 ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCACCAGACCGGACCAAGGG
* ** *
22947971 TTGT-GGCAGCGGGACCGGTAGCACGCAGAGA
130 TTGTAGG-AGCAGGACCGACAGCACACAG-GA
* * * * * * *
22948002 TGGACCGGGCCGATTCCCGGCTTGCGCATTATGCCTATCCAGTCAGCTCAGCAACCGCACGCTCA
1 GGGACCGGGCCGATTCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCACCCGCACGCTCA
* * * *
22948067 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTA-GTCTAAG-ATCAGACCGGATCGAGGG
66 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CTATGTCTAAGCACCAGACCGGACCAAGGG
* *
22948130 TTGTAGGAGCAGGATCGACAGCACACAGGG
130 TTGTAGGAGCAGGACCGACAGCACACAGGA
* * * * * **
22948160 GGGATCGGGCCAATCCCCAGCTTGCACATTCTGCCTCTCCGGCCAGCTGAGCACCCGCACGCTTG
1 GGGACCGGGCCGATTCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCACCCGCACGCTCA
* *
22948225 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCA
22948272 TACGAAGTTT
Statistics
Matches: 223, Mismatches: 41, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
157 2 0.01
158 94 0.42
159 119 0.53
160 8 0.04
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
GGGACCGGGCCGATTCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCACCCGCACGCTCA
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCACCAGACCGGACCAAGGGT
TGTAGGAGCAGGACCGACAGCACACAGGA
Found at i:22948245 original size:158 final size:160
Alignment explanation
Indices: 22947768--22948269 Score: 572
Period size: 158 Copynumber: 3.2 Consensus size: 160
22947758 CCATGTTTAA
* ** *
22947768 GCATACGGAGTTCATTTCT-TGTCTAAGATTGGACCGGATCGAGGG-T-TACGGCAGTAGGATCG
1 GCATACGGAGTTCATTCCTATGTCTAAGATCAGACCGGATCGAGGGTTGTA-GGCAGCAGGATCG
* * * * *
22947830 GCAACACGTAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGT
65 GCAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGC
* *
22947895 GCCCGCACGCCCATTTCATGGGTTGGCTTAG
130 ACCCGCACGCTCATTTCATGGGTTGGCTTAG
* ** * * * *
22947926 GCATAGGGAGTTCATT-CTATGTCTAAGCCCCAG-CCGGACCAAGGGTTGT-GGCAGCGGGACCG
1 GCATACGGAGTTCATTCCTATGTCTAAG-ATCAGACCGGATCGAGGGTTGTAGGCAGCAGGATCG
* ** * * * * * * *
22947988 GTAGCACGCAGAGATGGACCGGGCCGATTCCCGGCTTGCGCATTATGCCTATCCAGTCAGCTCAG
65 GCAGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAG
* *
22948053 CAACCGCACGCTCATTTCATGGGTTGACTTAG
129 CACCCGCACGCTCATTTCATGGGTTGGCTTAG
*
22948085 GCATACGGAGTTCATTCCTA-GTCTAAGATCAGACCGGATCGAGGGTTGTAGG-AGCAGGATCGA
1 GCATACGGAGTTCATTCCTATGTCTAAGATCAGACCGGATCGAGGGTTGTAGGCAGCAGGATCGG
* * * *
22948148 CAGCACACAGGGGGGATCGGGCCAATCCCCAGCTTGCACATTCTGCCTCTCCGGCCAGCTGAGCA
66 CAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCA
** *
22948213 CCCGCACGCTTGTTTCGTGGGTTGGCTTAG
131 CCCGCACGCTCATTTCATGGGTTGGCTTAG
22948243 GCATACGGAGTTCATTCC-ATGTCTAAG
1 GCATACGGAGTTCATTCCTATGTCTAAG
22948270 CATACGAAGT
Statistics
Matches: 279, Mismatches: 56, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 147 0.53
159 123 0.44
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCTATGTCTAAGATCAGACCGGATCGAGGGTTGTAGGCAGCAGGATCGG
CAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCA
CCCGCACGCTCATTTCATGGGTTGGCTTAG
Found at i:22948280 original size:26 final size:26
Alignment explanation
Indices: 22948243--22948295 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22948233 GTTGGCTTAG
*
22948243 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
*
22948269 GCATACGAAGTTTATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
22948295 G
1 G
22948296 ATTGGATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:22948476 original size:26 final size:26
Alignment explanation
Indices: 22948447--22948508 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
22948437 AGGCATACAA
*
22948447 AGTTCATTCCATGTCTAAGCATACGG
1 AGTTCATTCCATCTCTAAGCATACGG
* *
22948473 AGTTCATTCCTTCTTTAAGCATACGG
1 AGTTCATTCCATCTCTAAGCATACGG
22948499 AGTTCATTCC
1 AGTTCATTCC
22948509 CAGTGTAAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.35
Consensus pattern (26 bp):
AGTTCATTCCATCTCTAAGCATACGG
Found at i:22948517 original size:26 final size:26
Alignment explanation
Indices: 22948447--22948517 Score: 81
Period size: 26 Copynumber: 2.7 Consensus size: 26
22948437 AGGCATACAA
22948447 AGTTCATT-CCATGTCTAAGCATACGG
1 AGTTCATTCCCA-GTCTAAGCATACGG
*** *
22948473 AGTTCATTCCTTCTTTAAGCATACGG
1 AGTTCATTCCCAGTCTAAGCATACGG
*
22948499 AGTTCATTCCCAGTGTAAG
1 AGTTCATTCCCAGTCTAAG
22948518 ATTTTGAGCC
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
26 35 0.97
27 1 0.03
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (26 bp):
AGTTCATTCCCAGTCTAAGCATACGG
Found at i:22949034 original size:26 final size:26
Alignment explanation
Indices: 22949004--22949056 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22948994 GTTGGCATAG
22949004 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22949030 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22949056 G
1 G
22949057 ATCGGAACGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22949236 original size:26 final size:26
Alignment explanation
Indices: 22949200--22949278 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
22949190 GTTGGCTTAG
22949200 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
22949226 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
22949252 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
22949278 G
1 G
22949279 ATTTTGAGCC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 47 0.96
27 2 0.04
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:22949982 original size:26 final size:26
Alignment explanation
Indices: 22949952--22950002 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
22949942 TGACTTAGGC
22949952 ATACAGAGTTCATCCCCAGTCTAAGT
1 ATACAGAGTTCATCCCCAGTCTAAGT
*
22949978 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
22950003 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGT
Found at i:22950346 original size:159 final size:158
Alignment explanation
Indices: 22949978--22950354 Score: 429
Period size: 159 Copynumber: 2.4 Consensus size: 158
22949968 CAGTCTAAGT
** * *
22949978 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAACAAGATCGGCAGC
1 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCAGCAGC
** * * * * *
22950043 ATGCAGGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACAGGCTGAGATTCCG
66 ACACAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACAGGCTCAGATGCCG
* *
22950108 CACGCCCGTTTCGTGGGTTGGCTTAGGC
131 CACGCCCGTTTCATGGGTTGACTTAGGC
** ** * * *
22950136 ATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACCAAGGGTTGTGGTAGCGAGATCAGCA
1 ATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCAGCA
* *
22950199 GCACACAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCTGTTC-GGCTCAG-T
64 GCACACAG-GGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCG-ACAGGCTCAGAT
*
22950262 GCCTGCACGCTCGTTTCATGGGTTGACTTAGGC
127 GCC-GCACGCCCGTTTCATGGGTTGACTTAGGC
* * * * *
22950295 ATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGAGTTGCGGTAGCAGGATCA
1 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCA
22950355 ACAATAGGTA
Statistics
Matches: 177, Mismatches: 35, Indels: 13
0.79 0.16 0.06
Matches are distributed among these distances:
157 3 0.02
158 56 0.32
159 114 0.64
160 4 0.02
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (158 bp):
ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCAGCAGC
ACACAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACAGGCTCAGATGCCG
CACGCCCGTTTCATGGGTTGACTTAGGC
Found at i:22950485 original size:26 final size:26
Alignment explanation
Indices: 22950455--22950507 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22950445 GTTGGCTTAG
22950455 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
22950481 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22950507 G
1 G
22950508 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22952050 original size:26 final size:26
Alignment explanation
Indices: 22952021--22952073 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22952011 GTTGACTTAG
*
22952021 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
22952047 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
22952073 G
1 G
22952074 ATCGAACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:22952899 original size:26 final size:26
Alignment explanation
Indices: 22952850--22952902 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22952840 GTTGACTTAG
*
22952850 GCATACGGAGTTCATCCTCCGTCTAA
1 GCATACGGAGTTCATCCTCAGTCTAA
22952876 GCATACGGAGTTCATTCCT-AGTCTAA
1 GCATACGGAGTTCA-TCCTCAGTCTAA
22952902 G
1 G
22952903 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAGTCTAA
Found at i:22953181 original size:159 final size:158
Alignment explanation
Indices: 22952876--22955155 Score: 675
Period size: 159 Copynumber: 14.1 Consensus size: 158
22952866 CTCCGTCTAA
* * ** * * * * *
22952876 GCATACGGAGTTCATTCCTAGTCTAAG-ATCAGATCGGACCGAGGGTTATGGCAGCAGGATCGAC
1 GCATAGGGAGTTCATTCCCAGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGCGGGACCGAC
* * * * ** * *
22952940 AGCACGC--AGGGGGACCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGCTGACTGAGCG
65 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTTGGC-GACTCAACG
* * *
22953003 CCCGCACACCCATTTCGTGGGTTGGCTTAG
129 CCCGCACACTCATTTCATGGGTTGACTTAG
** **
22953033 GCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGGGACCGGTA
1 GCATAGGGAGTTCATTCCCAGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGGGACCGACA
** * * *
22953098 GCTGGTAGAGGGGGACTGGGCCGATCCCCGGCTTACGCATTATGCCTCTTTGGCAGGCTCAACGC
66 GCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTTGGC-GACTCAACGC
* *
22953163 CCGCACACTCATTGCGTGGGTTGACTTAG
130 CCGCACACTCATTTCATGGGTTGACTTAG
** * * * * * *
22953192 GCAT-GCGGAGTTCATTCCCAGTCTAAG-ATCGGACTGGACCAAGGGTTGCGACAGCAGGATCGA
1 GCATAG-GGAGTTCATTCCCAGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGCGGGACCGA
* * * * * *
22953255 CAGCACCCAGACGGGGACCGGGTCGATCCCCGGCTTATGCATTCTGCCTC--T--C--C-GAACG
64 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTTGGCGACTCAACG
*
22953313 CCCG--------TTTCATGGGTTGGCTTAG
129 CCCGCACACTCATTTCATGGGTTGACTTAG
* * * * *
22953335 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAGCCGGATCGAGGGTTGTGGTAGCGAGACCGAC
1 GCATAGGGAGTTCATTCCCA-GTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGGGACCGAC
**
22953399 AGCACGCAGAGGGGGACCGGGCCGATCCCTAGCTTACGCATTATGCCT-TTTCGGTCGACTCAAC
65 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTT-GG-CGACTCAAC
* * * *
22953463 ACCCGCACGCTCGTTTCATGGGTTGACTTAC
128 GCCCGCACACTCATTTCATGGGTTGACTTAG
* ** * * * * * ** *
22953494 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCAGACCGAGGGTTGCGACAGCAGGATTGAT
1 GCATAGGGAGTTCATTCCCAGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGCGGGACCGAC
* * * * * ** * * * **
22953558 AGCACCCA-AGGGGGGATCGGGCCGATCCCCAGCTTACGCATTCTACCTCTCCAGCCGGCTGAGT
65 AGCACGCAGA-GGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCT-TTGGCGACTCAAC
* * * *
22953622 GCCTGCACGCTCATTTCTTGGGTTGGCTTAG
128 GCCCGCACACTCATTTCATGGGTTGACTTAG
* * * * *
22953653 GCATACGGAGTTCATT-CCATGTGTAA-CCATACGGAGTTCATTCCGAGTCTAAGATCGGTCTG-
1 GCATAGGGAGTTCATTCCCA-GTCTAAGCC---C------CA-GCCG-GACCAAG---GGT-TGT
* * * ** * * * * *
22953715 GACCGAGGGTTGCGACAGGACAAGCAGTAGGATCTACAGCACGCAGGGGGGATCGGACCAATCCT
50 GGCAGCGGG-ACCGACA-G-CACGCAG-AGG------GGGAC-C-----GG----G-CCGATCCC
* ** * * * * * * * * * *
22953780 CAGCTTGTGCATTCTGCCTCTTTGGTGGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTA
94 CGGCTTACGCATTATGCCTCTTTGG-CGACTCAACGCCCGCACACTCATTTCATGGGTTGACTTA
22953845 G
158 G
* * * * * * *
22953846 GCATAGGGAGTTCATT-ACATGTCTAAGCCCCAACTGGACCTAGGGTTGTGGTAGCGGGACTGTC
1 GCATAGGGAGTTCATTCCCA-GTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGGGACCGAC
* * * * * * * * * * ** * *
22953910 AGCATGTAGTGGGGGACCAGACTGATCCCCCGCTTGCGCGTTATACCTCTCAGGCCGACTGAGCG
65 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTTGG-CGACTCAACG
** *
22953975 CCCGCATGCTCATTTTATGGGTTGACTTAG
129 CCCGCACACTCATTTCATGGGTTGACTTAG
* * * ** ** * * *
22954005 GCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGGATTGGATCGGAC
1 GCATAGGGAGTTCATTCCCAGTCTAAGC---CCCAG--C---CGGA-CCAAGGGTT-G-T-GG--
* * * * * * *
22954070 CGAGGGTTGTGATAGCAGGATCGACAGCATGCAG-GGGGGATCGAGTCGATCCCCAGCTTGCGCA
52 C-AGCG--G-G--A-C-----CGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGCA
* ** * ** * * * * * * * *
22954134 TTCTGCCTCTCCGATCGGTTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAC
105 TTATGCCTCTTTG-GCGACTCAACGCCCGCACACTCATTTCATGGGTTGACTTAG
* * ** *
22954189 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAATGGGACCGGC
1 GCATAGGGAGTTCATTCCCA-GTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGGGACCGAC
** * * * * * *
22954253 AGCATACAGAGGGGGACCGGGCCGATCCCCGACTTGCGTATTATGCCTCTTCGGCCGGCTCAGCG
65 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTTGG-CGACTCAACG
* *
22954318 CCCGCACGCTCATTTCATGGGTTGACTTAT
129 CCCGCACACTCATTTCATGGGTTGACTTAG
* ** * * * * * ** *
22954348 GCATACGGAGTTCATTCCCAGTCTAAG-ATCGGATC-GACCGAGGGTTGCGGTAGTAGGATCGAC
1 GCATAGGGAGTTCATTCCCAGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGCGGGACCGAC
* * * ** * * * ** * * *
22954411 ACCACGCAGGGGGGGATCAAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGGCT-AGGC
65 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTTGG-CGACTCA-AC
* * * *
22954475 ACCCGCA-AGCTCGTTTCGTGGGTTGGCTTAG
128 GCCCGCACA-CTCATTTCATGGGTTGACTTAG
* * * ** *
22954506 GCATAGGGAGTTCATT-CCATGTCTAGGCCCTAGCCAGACTGAGGGTTGTGGCAGCAGGACCGAC
1 GCATAGGGAGTTCATTCCCA-GTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGGGACCGAC
** * * * * * * * * *
22954570 AGCTGGTAGAGGGAGACCAGGCCCATCCCCGGCTTGCGCGTTATGCCTCTCTGGCCAGCTCAACA
65 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTTGGCGA-CTCAACG
** *
22954635 CCCGCACACTTGTTTCGTGGGTTGACTTAG
129 CCCGCACACTCATTTCATGGGTTGACTTAG
** *** * * * ** * *
22954665 GCATACAGAGTTCATTCCCAGTCTAA-CATTAGACCAGATCGAGGGTTACGGCAGCAGGATCGAC
1 GCATAGGGAGTTCATTCCCAGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGCGGGACCGAC
* * * * * ** * * * **
22954729 AGCACGCAG-GGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGTCTCTCCGACCGGCTGAGTG
65 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTTG-GCGACTCAACG
* * * * *
22954793 CCCGTACGCCCGTTTCATGGGTTGGCTTAG
129 CCCGCACACTCATTTCATGGGTTGACTTAG
* * * * *
22954823 GCATAAGGAGTTCATT--CATGTCTGAGCCCCAGCCGGATCGAA-GGTTGTGGTAGCAGGACCGA
1 GCATAGGGAGTTCATTCCCA-GTCTAAGCCCCAGCCGGA-CCAAGGGTTGTGGCAGCGGGACCGA
* * * * * * * * * * *
22954885 CAGCAGGTAGAGAGGGACCGAGTCGATCCCCGGCTTGCGCATTATACCTCTCTGGTAGGCTTAAC
64 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTTGG-CGACTCAAC
* * *
22954950 GCCCACACACTCGTTTCGTGGGTTGACTTAG
128 GCCCGCACACTCATTTCATGGGTTGACTTAG
** ** * * * * *** *
22954981 GCATACAGAGTTCATTCCCAGTCTAAG-ATCGGACCAGACCGAGGGTTGCGGCAATAGGATCGAC
1 GCATAGGGAGTTCATTCCCAGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGCGGGACCGAC
* * * * ** * * *
22955045 AGCACGCAG-GGAGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCG
65 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTTGG-CGACTCAACG
* * * * *
22955109 CCCGTACGCTCGTTTCGTGGGTTGGCTTAG
129 CCCGCACACTCATTTCATGGGTTGACTTAG
**
22955139 GCATACAGAGTTCATTC
1 GCATAGGGAGTTCATTC
22955156 GATGTCTAAG
Statistics
Matches: 1580, Mismatches: 418, Indels: 249
0.70 0.19 0.11
Matches are distributed among these distances:
142 3 0.00
143 99 0.06
144 3 0.00
148 1 0.00
150 1 0.00
151 15 0.01
152 1 0.00
155 1 0.00
156 2 0.00
157 91 0.06
158 392 0.25
159 657 0.42
160 17 0.01
162 2 0.00
163 1 0.00
164 3 0.00
166 1 0.00
167 2 0.00
168 11 0.01
169 8 0.01
170 5 0.00
171 2 0.00
172 11 0.01
173 6 0.00
174 5 0.00
175 10 0.01
176 7 0.00
177 7 0.00
178 1 0.00
179 7 0.00
180 9 0.01
181 3 0.00
182 2 0.00
183 8 0.01
184 86 0.05
185 12 0.01
188 2 0.00
191 1 0.00
192 2 0.00
193 81 0.05
194 2 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATAGGGAGTTCATTCCCAGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGGGACCGACA
GCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTTGGCGACTCAACGCC
CGCACACTCATTTCATGGGTTGACTTAG
Found at i:22953352 original size:302 final size:302
Alignment explanation
Indices: 22953015--22953609 Score: 827
Period size: 302 Copynumber: 2.0 Consensus size: 302
22953005 CGCACACCCA
* *
22953015 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGCCGGACCAAGGGTT
1 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTT
* ** ** * * *
22953080 GTGGCAGCGGGACCGGTAGCTGGTAGAGGGGGACTGGGCCGATCCCCGGCTTACGCATTATGCCT
66 GTGGCAGCGAGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCT
* * * * *
22953145 CTTT-GG-CAGGCTCAACGCCCGCACACTCATTGCGTGGGTTGACTTAGGCATGCGGAGTTCATT
131 -TTTCGGTC-GACTCAACACCCGCACACTCATTGCATGGGTTGACTTACGCATACGGAGTTCATT
* **
22953208 CCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGACAGCAGGATCGACAGCACCC-AGACGGGGA
194 CCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATCGACAGCACCCAAG-CGGGGA
* * * *
22953272 CCGGGTCGATCCCCGGCTTATGCATTCTGCCTCTCCGAACGCCCG
258 CCGGGCCGATCCCCAGCTTACGCATTCTACCTCTCCGAACGCCCG
* * *
22953317 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGATCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTT
* *
22953382 GTGGTAGCGAGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTAGCTTACGCATTATGCCT
66 GTGGCAGCGAGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCT
* * *
22953447 TTTCGGTCGACTCAACACCCGCACGCTCGTTTCATGGGTTGACTTACGCATACGGAGTTCATTCC
131 TTTCGGTCGACTCAACACCCGCACACTCATTGCATGGGTTGACTTACGCATACGGAGTTCATTCC
* * * * *
22953512 CAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATTGATAGCACCCAAGGGGGGATCG
196 CAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATCGACAGCACCCAAGCGGGGACCG
22953577 GGCCGATCCCCAGCTTACGCATTCTACCTCTCC
261 GGCCGATCCCCAGCTTACGCATTCTACCTCTCC
22953610 AGCCGGCTGA
Statistics
Matches: 255, Mismatches: 35, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
301 3 0.01
302 249 0.98
303 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (302 bp):
TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTT
GTGGCAGCGAGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCT
TTTCGGTCGACTCAACACCCGCACACTCATTGCATGGGTTGACTTACGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATCGACAGCACCCAAGCGGGGACCG
GGCCGATCCCCAGCTTACGCATTCTACCTCTCCGAACGCCCG
Found at i:22954034 original size:26 final size:26
Alignment explanation
Indices: 22954005--22954055 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
22953995 GTTGACTTAG
22954005 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
22954031 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATCCCCAGTCTA
22954056 GGATTGGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:22954239 original size:343 final size:339
Alignment explanation
Indices: 22953369--22954374 Score: 1002
Period size: 352 Copynumber: 2.9 Consensus size: 339
22953359 AAGCCCTAGC
* * * * *
22953369 CGGATCGAGGGTTGTGGTAGC-GAGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTAGCT
1 CGGACCGAGGGTTGTGATAGCAG-GATCGACAGCACGCAG-GGGGGATC-GGCCGATCCCCAGCT
* * * * * * *
22953433 TACGCATTATGCCTTTTCGGTCGACTCAACACCCGCACGCTCGTTTCATGGGTTGACTTACGCAT
63 TGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTACGCAT
* ** * * * *
22953498 ACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGACAGCAGGATTGAT-AG
128 AGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCGGGACTG-TCAG
** * * * * *
22953560 CACCCAAGGGGGGATCGGGCCGATCCCCAGCTTACGCATTCTACCTCTCCA-GCCGGCTGAGTGC
190 CA-TAAAGGGGGGACCGGGCCGATCCCCCGCTTGCGCATTATACCTCT-CAGGCCGGCTGAGCGC
* * * * *
22953624 CTGCACGCTCATTTCT-TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTGTAACCATACGGA
253 CCGCACGCTCATTT-TATGGGTTGACTTAGGCATACGGAGTTCATCCCA-GTCTAAGCATACGGA
*
22953688 GTTCATTCCGAGTCTAAGATCGGT
316 GTTCATTCCCAGTCTAAGATCGGT
* * * *
22953712 CTGGACCGAGGGTTGCGACAGGACAAGCAGTAGGATCTACAGCACGCAGGGGGGATCGGACCAAT
1 C-GGACCGAGGGTT--G---TGA-TAGC---AGGATCGACAGCACGCAGGGGGGATCGG-CCGAT
* * * * *
22953777 CCTCAGCTTGTGCATTCTGCCTCTTTGGTGGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGC
55 CCCCAGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGC
* * * ** * *
22953842 TTAGGCATAGGGAGTTCATTACATGTCTAAGCCCCAACTGGACCTAGGGTTGTGGTAGCGGGACT
120 TTACGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACT
** * * * * *
22953907 GTCAGCATGTAGTGGGGGACCAGACTGATCCCCCGCTTGCGCGTTATACCTCTCAGGCCGACTGA
185 GTCAGCATAAAG-GGGGGACCGGGCCGATCCCCCGCTTGCGCATTATACCTCTCAGGCCGGCTGA
* *
22953972 GCGCCCGCATGCTCATTTTATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATAC
249 GCGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATAC
* *
22954037 GGAGTTCATTCCCAGTCTAGGATTGGAT
313 GGAGTTCATTCCCAGTCTAAGATCGG-T
* *
22954065 CGGACCGAGGGTTGTGATAGCAGGATCGACAGCATGCAGGGGGGATCGAGTCGATCCCCAGCTTG
1 CGGACCGAGGGTTGTGATAGCAGGATCGACAGCACGCAGGGGGGATCG-GCCGATCCCCAGCTTG
* * * * * *
22954130 CGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTACGCATAG
65 CGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTACGCATAG
** * * *
22954195 GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAATGGGACCGGCAGCATAC
130 GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACTGTCAGCATAA
* * *
22954260 AGAGGGGGACCGGGCCGAT-CCCCGACTTGCGTATTATGCCTCTTC-GGCCGGCTCAGCGCCCGC
195 AG-GGGGGACCGGGCCGATCCCCCG-CTTGCGCATTATACCTC-TCAGGCCGGCTGAGCGCCCGC
* *
22954323 ACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
257 ACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTCTAAG
22954375 ATCGGATCGA
Statistics
Matches: 538, Mismatches: 101, Indels: 48
0.78 0.15 0.07
Matches are distributed among these distances:
342 5 0.01
343 236 0.44
344 15 0.03
346 4 0.01
347 2 0.00
349 1 0.00
350 4 0.01
351 10 0.02
352 239 0.44
353 21 0.04
354 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (339 bp):
CGGACCGAGGGTTGTGATAGCAGGATCGACAGCACGCAGGGGGGATCGGCCGATCCCCAGCTTGC
GCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTACGCATAGG
GAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACTGTCAGCATAAA
GGGGGGACCGGGCCGATCCCCCGCTTGCGCATTATACCTCTCAGGCCGGCTGAGCGCCCGCACGC
TCATTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGGAGTTCATTCCC
AGTCTAAGATCGGT
Found at i:22954516 original size:158 final size:159
Alignment explanation
Indices: 22954031--22955155 Score: 918
Period size: 158 Copynumber: 7.1 Consensus size: 159
22954021 CCCAGTCTAA
* ** * * **
22954031 GCATACGGAGTTCATTCCCAGTCTAGGATTGGATCGGACCGAGGGTTGTGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * ** *
22954096 GCATGCA-GGGGGGATCGAGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGG-TTGAGCG
66 GCACGCAGGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTAG-GCG
* * * *
22954159 CCCGTACGCCCGTTTCATGGGTTGGCTTAC
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *** * *
22954189 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCAGACCGAGGGTTGTGGCAATGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCCGA-CCAGACCGAGGGTTGTGGCAGCAGGATCGA
** * * * * * *
22954252 CAGCATACAGAGGGGGACCGGGCCGATCCCCGACTTGCGTATTATGCCTCTTCGGCCGGCTCA-G
64 CAGCACGCAGGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCT-AGG
* * * *
22954316 CGCCCGCACGCTCATTTCATGGGTTGACTTAT
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
22954348 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GACCGAGGGTTGCGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * ** ** *
22954412 CCACGCAGGGGGGGATCAAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGGCTAGGCAC
66 GCACGCAGGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTAGGCGC
*
22954477 CCGCAAGCTCGTTTCGTGGGTTGGCTTAG
131 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * *
22954506 GCATAGGGAGTTCATT-CCATGTCT-AGGCCCTAGCCAGACTGAGGGTTGTGGCAGCAGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCCGA-CCAGACCGAGGGTTGTGGCAGCAGGATCGA
** * * * * * * * * * * *
22954569 CAGCTGGTAGAGGGAGACCAGGCCCATCCCCGGCTTGCGCGTTATGCCTCTCTGGCCAGCTCA-A
64 CAGCACGCAGGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCT-AGG
* * * *
22954633 CACCCGCACACTTGTTTCGTGGGTTGACTTAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * **
22954665 GCATACAGAGTTCATTCCCAGTCTAACATTAGACCAGATCGAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * *
22954730 GCACGCA-GGGGGGATCGGG-CTGATCCCCGGCTTGCGCATTCTGTCTCTCCGACCGGCT-GAGT
66 GCACGCAGGGGGGGACCGGGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTAG-GC
* * *
22954792 GCCCGTACGCCCGTTTCATGGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * * * *
22954823 GCATAAGGAGTTCATT--CATGTCTGAG-CCCCAGCCGGATCGAAGGTTGTGGTAGCAGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCCGA-CCAGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * * * * ** *
22954885 CAGCAGGTAGAGAGGGACCGAGTCGATCCCCGGCTTGCGCATTATACCTCTCTGGTAGGCTTA-A
64 CAGCACGCAGGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGC-TAGG
* * *
22954949 CGCCCACACACTCGTTTCGTGGGTTGACTTAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * **
22954981 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAATAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * *
22955046 GCACGCA-GGGAGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGGCCGGCT-GAGCG
66 GCACGCAGGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTAG-GCG
*
22955109 CCCGTACGCTCGTTTCGTGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
22955139 GCATACAGAGTTCATTC
1 GCATACGGAGTTCATTC
22955156 GATGTCTAAG
Statistics
Matches: 740, Mismatches: 199, Indels: 56
0.74 0.20 0.06
Matches are distributed among these distances:
156 3 0.00
157 50 0.07
158 401 0.54
159 270 0.36
160 16 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTAGGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:22954986 original size:316 final size:314
Alignment explanation
Indices: 22954031--22955163 Score: 1364
Period size: 317 Copynumber: 3.6 Consensus size: 314
22954021 CCCAGTCTAA
* * * * * * **
22954031 GCATACGGAGTTCATTCCCAGTCTAGGATTGGATCGGACCGAGGGTTGTGATAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
22954096 GCATGCAGGGGGGATCGAGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCC
66 GCACGCAGGGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* *
22954161 CGTACGCCCGTTTCATGGGTTGGCTTACGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
131 CGTACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCT-AGCCCCAGCCAG
*** * *** * *
22954226 ACCGAGGGTTGTGGCAATGGGACCGGCAGCATACAGAGGGGGACCGGGCCGATCCCCGACTTGCG
195 A-CGAGGGTTGTGGCAGCAGGACCGACAGCAGGTAGA-GGGGACCGAGCCGATCCCCGGCTTGCG
* * * * * * *
22954291 TATTATGCCTCT-TCGGCCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAT
258 CATTATGCCTCTCT-GGCAGGCTCAACGCCCGCACACTCGTTTCGTGGGTTGACTTAG
* * * *
22954348 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GACCGAGGGTTGCGGTAGTAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *** *
22954412 CCACGCAGGGGGGGATCAAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGGCT-AGGCA
66 GCACGCA-GGGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGA-GCG
* * * * * *
22954476 CCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAGGCCCTAGCC
129 CCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTA-GCCCCAGCC
* *
22954541 AGACTGAGGGTTGTGGCAGCAGGACCGACAGCTGGTAGAGGGAGACC-AGGCCCATCCCCGGCTT
193 AGAC-GAGGGTTGTGGCAGCAGGACCGACAGCAGGTAGAGGG-GACCGA-GCCGATCCCCGGCTT
* * *
22954605 GCGCGTTATGCCTCTCTGGCCA-GCTCAACACCCGCACACTTGTTTCGTGGGTTGACTTAG
255 GCGCATTATGCCTCTCTGG-CAGGCTCAACGCCCGCACACTCGTTTCGTGGGTTGACTTAG
* ** * *
22954665 GCATACAGAGTTCATTCCCAGTCTAACATTAGACCAGATCGAGGGTTACGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *
22954730 GCACGCAGGGGGGATCG-GGCTGATCCCCGGCTTGCGCATTCTGTCTCTCCGACCGGCTGAGTGC
66 GCACGCAGGGGGGATCGAGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
*
22954794 CCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATT-CATGTCTGAGCCCCAGCCG
130 CCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCT-AGCCCCAGCCA
* * *
22954858 GATCGAAGGTTGTGGTAGCAGGACCGACAGCAGGTAGAGAGGGACCGAGTCGATCCCCGGCTTGC
194 GA-CGAGGGTTGTGGCAGCAGGACCGACAGCAGGTAGAG-GGGACCGAGCCGATCCCCGGCTTGC
* * * *
22954923 GCATTATACCTCTCTGGTAGGCTTAACGCCCACACACTCGTTTCGTGGGTTGACTTAG
257 GCATTATGCCTCTCTGGCAGGCTCAACGCCCGCACACTCGTTTCGTGGGTTGACTTAG
**
22954981 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAATAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
22955046 GCACGCAGGGAGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
66 GCACGCAGGGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * *
22955111 CGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACA-GAGTTCATTCGATGTCTA
131 CGTACGCCCGTTTCATGGGTTGGCTTAGGCATA-AGGAGTTCATTCCATGTCTA
22955164 AGAATACGGA
Statistics
Matches: 702, Mismatches: 95, Indels: 39
0.84 0.11 0.05
Matches are distributed among these distances:
315 1 0.00
316 309 0.44
317 358 0.51
318 34 0.05
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (314 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGTACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAGCCCCAGCCAGA
CGAGGGTTGTGGCAGCAGGACCGACAGCAGGTAGAGGGGACCGAGCCGATCCCCGGCTTGCGCAT
TATGCCTCTCTGGCAGGCTCAACGCCCGCACACTCGTTTCGTGGGTTGACTTAG
Found at i:22955504 original size:26 final size:26
Alignment explanation
Indices: 22955475--22955527 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22955465 GTTGGCTTAG
*
22955475 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
22955501 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22955527 G
1 G
22955528 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22956103 original size:26 final size:26
Alignment explanation
Indices: 22956053--22956106 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
22956043 GTTGACATAG
*
22956053 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
22956079 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22956105 GC
1 GC
22956107 GCCCGCACGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22956484 original size:26 final size:26
Alignment explanation
Indices: 22956455--22956507 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22956445 GTTAGCTTAG
22956455 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22956481 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22956507 G
1 G
22956508 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22957780 original size:317 final size:316
Alignment explanation
Indices: 22957203--22958009 Score: 1000
Period size: 317 Copynumber: 2.5 Consensus size: 316
22957193 CTCAGTCTAA
* * * *
22957203 GCATACGGAGTTCATT-TCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGAAGTTCATTCT-CAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * *
22957267 AGCACGTAGGGTGGACCGGGTCGATCCTCGGCTTGCACATTCTACCTCTCTGGCCGGTTGAGCGC
65 AGCACGCAGGGGGGACCGGGTCGATCCTTGGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGC
* *
22957332 C-TGCATGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT
130 CGTACGTGC-C-TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT
*
22957396 GGACCGAGGGTTGTGGCAACGGGACCGACAGCACACAGAGGGGGACTGAGCCGATCCCCGACTTG
193 GGACCGAGGGTTGAGGCAACGGGACCGACAGCACACAGAGGGGGACTGAGCCGATCCCCGACTTG
* * *
22957461 CGCATTATGCCTCTACGG-TCGGCTTAGCACCCGAACACTCGTTTCGTGGGTTCACTTAG
258 CGCATTATGCCTCTACGGCT-GGCTCAGCACCCGAACACTCGTTTCGTGGGCTAACTTAG
*
22957520 GCATACGAAGTTCATTCTCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAAGATCGACA
1 GCATACGAAGTTCATTCTCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
22957585 GCACACAGGGGGGACCGAGCCGATCCTTAGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGTC
66 GCACGCAGGGGGGACCGGGTCGATCCTTGGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCG-C
*
22957650 CGTACGTGCCTTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TAG
130 CGTACGTGCCTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-G
** ** * * * *
22957714 GATTGAGGGTTGAGGCAGTGGGACCGGCAGCACGCAGAGGGGGACT-AGGCCGATCCTCGGCTTG
194 GACCGAGGGTTGAGGCAACGGGACCGACAGCACACAGAGGGGGACTGA-GCCGATCCCCGACTTG
** * * * *
22957778 CGCATTATGCCTCTTTGGCTGGCTCAGCGCCCGCACGCTCGTTTCGTGGGCTAACTTAT
258 CGCATTATGCCTCTACGGCTGGCTCAGCACCCGAACACTCGTTTCGTGGGCTAACTTAG
* * *
22957837 GCATAC-ATAGTTCATTC-CAGGTCTAAGATCGGATCGGACCAAGGGTTGTGGCAGTAGGATCGA
1 GCATACGA-AGTTCATTCTCA-GTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * ** * *
22957900 CAGCATGCATGGGGGACCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCG
64 CAGCACGCAGGGGGGACCGGGTCGATCCTTGGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCG
* * * **
22957965 CCCGCACGCT-CGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
129 -CCGTACG-TGCCTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
22958010 CCCTAGGCTA
Statistics
Matches: 423, Mismatches: 58, Indels: 18
0.85 0.12 0.04
Matches are distributed among these distances:
316 5 0.01
317 407 0.96
318 6 0.01
319 5 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (316 bp):
GCATACGAAGTTCATTCTCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGTCGATCCTTGGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCC
GTACGTGCCTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGA
CCGAGGGTTGAGGCAACGGGACCGACAGCACACAGAGGGGGACTGAGCCGATCCCCGACTTGCGC
ATTATGCCTCTACGGCTGGCTCAGCACCCGAACACTCGTTTCGTGGGCTAACTTAG
Found at i:22958021 original size:158 final size:157
Alignment explanation
Indices: 22957203--22959023 Score: 742
Period size: 158 Copynumber: 11.2 Consensus size: 157
22957193 CTCAGTCTAA
* * *
22957203 GCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
22957268 GCACG-TAGGGTGGACCGGGTCGAT-CCTCGGCTTGCACATTCTACCTCTCTGGCCGGTTGAGCG
65 GCACGCAAGGG-GGACCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* * * *
22957331 CCTGCATGCTCATTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** * * * * *
22957361 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCTGGACCGAGGGTTGTGGCAACGGGACCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * * *
22957425 AGCACACAGAGGGGGACTGAGCCGATCCCCGACTTGCGCATTATGCCTCTACGGTCGGCTTAGCA
64 AGCACGCA-AGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* * *
22957490 CCCGAACACTCGTTTCGTGGGTTCACTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
22957520 GCATACGAAGTTCATTCTCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
22957585 GCACACAGGGGGGACCGAGCCGATCCTTAGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGTC
65 GCACGCAAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
* * *
22957650 CGTACG-TGCCTTTCGTGGGTTGGCTTAG
130 CGCACGCT-CGTTTCGTGGGTTGACTTAG
* * * ** * ** * ** * *
22957678 GTATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTAGGATTGAGGGTTGAGGCAGTGGGACCGGC
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGGA-TCGGACCGAGGGTTGCGGCAGCAGGATCGAC
** * ** * *
22957742 AGCACGCAGAGGGGGACTAGGCCGAT-CCTCGGCTTGCGCATTATGCCTCTTTGGCTGGCTCAGC
64 AGCACGCA-AGGGGGACCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC
* * *
22957806 GCCCGCACGCTCGTTTCGTGGGCTAACTTAT
127 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
** * * *
22957837 GCATACATAGTTCATTCCAGGTCTAAGATCGGATCGGACCAAGGGTTGTGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
22957902 GCATGCATGGGGGACCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCGCC
65 GCACGCAAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
22957967 CGCACGCTCGTTTCGTGGGTTGACTTAG
130 CGCACGCTCGTTTCGTGGGTTGACTTAG
* * * ** * * * * *
22957995 GCATACAGAGTTCATCCCTAGGCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
1 GCATACGGAGTTCATTCC-AGTCTAAG-AT-C-G-G---A-TCGGA-CCGAGGGT-TG--CGG-C
* * * * *** * ** *
22958060 TG-AGGGTTGCGACAACAGGATCGACAGCACG-CAGGGGGGATCGAGCCGATCCCTGGCTTGTGC
52 AGCA-GGAT-CGACAGCACG--C-A-AGGGGGACCGGGCCGAT---------CCCTGGCTTGCGC
** ** ** * * *
22958123 ATTCTATCTCTTTGGCCAACTGAGCGCCCGCACGCCCGTTTCGTAGGTTGGCTTAG
102 ATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** * * ** * * *
22958179 GCATAGGGAGTTCATTCCATGTCTAAG-CCCTAGTTGGACGGAGGGTTGTAGTAGCGGGACCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGGA-TCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * * *** * *
22958243 AGCATGCAGAGAGGGACCGGGCTGATCCCCGACTTACGCATTATGCATCTTCGATTGGCTCAACG
64 AGCACGCA-AGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* *
22958308 CCCGCACGCTCATTTCGTGGGTTGACTTAT
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * *
22958338 GCATACAGAGTTCATTCCCAATCTAAGATCAGA-CTGGACCGAGGGTTACAGTAGGAAGG-TCGA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCA-GCAGGATCGA
* * * * * **
22958401 CAGCACGCAGGGGGGATCGGGTCGAT-CCTCGGCTTGTGCATTCTGCCTCTTCGATCGGCTGAGC
63 CAGCACGCAAGGGGGACCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC
* *
22958465 GCCCACACGCTCGTTTCGTGGGTTAACTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *** * * *
22958496 GCATACAGAGTTCATCCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGG-A
1 GCATACGGAGTTCATTC-CAGTCTAAG-AT-CGGA--TC-GGACC-G---AGGGTTG--C-GGCA
* * * * * ** * ** * *
22958560 CCGAGGGCTGCGGCAGCA-GGATTGACAGTACGCAGGGGAGATCAGGTCGATCCCCGGCTTGCGT
53 GC-A-GGAT-CGACAGCACGCA-AG-GGGGAC-C-GGGCCG---------ATCCCTGGCTTGCGC
* * * * * * * * *
22958624 TTTCTGCCTCTTCGGTCGACTGAGCGCCTGTATC-CCCATTTCGTGGGTTGGCTTAG
102 ATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCA-CGCTCGTTTCGTGGGTTGACTTAG
* * ** * * * * *** *
22958680 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCGGACAGAGTGTTGTGGTAATGGGACCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGGA-TCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * ** * * * * * * *
22958744 AGCATGCAGAAGGGGACCGGGCCGATCCCCAGCTTGTGCATTATGACTCTCCGACCGGTTCAGTG
64 AGCACGCA-AGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* * * *
22958809 CCCGTACGCTCATTTTGTGGGTTGACTTTG
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
22958839 GCATACGGAGTTCATTCTCAGTCTAAGACCGGA-CTGGACCGAGGGTTGCGGCAGCAGGATCAAC
1 GCATACGGAGTTCATTC-CAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *** * *
22958903 AGCACGCAGGGGGGATCGGGTCGATCCCTGACTTATACATTCTACCTCTCCGACCGGCTGAGCGC
64 AGCACGCAAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* * *
22958968 CCGCACGCTCGTTTCATAGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGACTTAG
22958997 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
22959024 CATACAGAGT
Statistics
Matches: 1204, Mismatches: 367, Indels: 184
0.69 0.21 0.10
Matches are distributed among these distances:
157 18 0.01
158 433 0.36
159 429 0.36
160 31 0.03
161 1 0.00
162 1 0.00
163 3 0.00
164 1 0.00
165 1 0.00
166 3 0.00
167 11 0.01
168 13 0.01
169 4 0.00
170 24 0.02
171 15 0.01
172 19 0.02
173 3 0.00
174 3 0.00
175 18 0.01
176 5 0.00
178 1 0.00
179 1 0.00
180 2 0.00
181 3 0.00
183 3 0.00
184 155 0.13
185 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:22958147 original size:184 final size:184
Alignment explanation
Indices: 22957837--22958193 Score: 473
Period size: 184 Copynumber: 1.9 Consensus size: 184
22957827 GCTAACTTAT
* * * * * **
22957837 GCATACATAGTTCATTCCAGGTCTAAGATCGGATCGGACCAAGGGTTGTGGCAGTAGGATCGACA
1 GCATACAGAGTTCATTCCAGGTCTAAGATCAGACCGGACCAAGGGTTGCGACAACAGGATCGACA
* * * * * * *
22957902 GCATGCATGGGGGACCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCGCC
66 GCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGTGCATTCTACCTCTCCGGCCAACTGAGCGCC
* *
22957967 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCTAGGCTAA
131 CGCACGCCCGTTTCGTAGGTTGACTTAGGCATACAGAGTTCATCCCTAGGCTAA
**
22958021 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCGGACTGAGGGTTGCGACAACAGGATCGAC
1 GCATACAGAGTTCATT-CCAGGTCTAAGATCAGACCGGACCAAGGGTTGCGACAACAGGATCGAC
* * **
22958085 AGCACGCAGGGGGGATCGAGCCGATCCCTGGCTTGTGCATTCTATCTCTTTGGCCAACTGAGCGC
65 AGCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGTGCATTCTACCTCTCCGGCCAACTGAGCGC
* **
22958150 CCGCACGCCCGTTTCGTAGGTTGGCTTAGGCATAGGGAGTTCAT
130 CCGCACGCCCGTTTCGTAGGTTGACTTAGGCATACAGAGTTCAT
22958194 TCCATGTCTA
Statistics
Matches: 147, Mismatches: 25, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
184 144 0.98
185 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCAGGTCTAAGATCAGACCGGACCAAGGGTTGCGACAACAGGATCGACA
GCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGTGCATTCTACCTCTCCGGCCAACTGAGCGCC
CGCACGCCCGTTTCGTAGGTTGACTTAGGCATACAGAGTTCATCCCTAGGCTAA
Found at i:22958476 original size:501 final size:499
Alignment explanation
Indices: 22957520--22959241 Score: 1912
Period size: 501 Copynumber: 3.4 Consensus size: 499
22957510 GTTCACTTAG
* * * * * *
22957520 GCATAC-GAAGTTCATTCTCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAAGATCGAC
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAACAGGATCGAC
* * * * * *
22957584 AGCACACAGGGGGGACCGAGCCGATCCTTAGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGT
65 AGCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGC
* * * *
22957649 CCGTACGTGCC-TTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGTA
130 CCGCACG-CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
** * * * * ** * *
22957713 GGATTGAGGGTTG-AGGCAGTGGGACCGGCAGCACGCAGAGGGGGACTAGGCCGATCCTCGGCTT
194 GGACAGAGGGTTGTA-GTAGTGGGACCGACAGCATGCAGAGAGGGACCGGGCCGATCCCCGACTT
* * * * * *
22957777 GCGCATTATGCCTCTTTGGCTGGCTCAGCGCCCGCACGCTCGTTTCGTGGGCTAACTTATGCATA
258 GCGCATTATGCATCTTCGACTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATA
* *
22957842 CATAGTTCATT-CCAGGTCTAAGATCGGA-TCGGACCAAGGGTTGTGGCAGTAGGA--TCGACAG
323 CAGAGTTCATTCCCA-GTCTAAGATCGGACT-GGACCGAGGG-T-T-GCAGTAGGAGGTCGACAG
* * * * *
22957903 CATGCATGGGGGACCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCGCCC
383 CACGCAGGGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
*
22957968 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCTAGGCTAA
448 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT-CCTAGTCTAA
*
22958021 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAACAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAACAGGATCGACA
* * ** ** *
22958086 GCACGCAGGGGGGATCGAGCCGATCCCTGGCTTGTGCATTCTATCTCTTTGGCCAACTGAGCGCC
66 GCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCC
* * *
22958151 CGCACGCCCGTTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTTGG
131 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
* * * *
22958216 ACGGAGGGTTGTAGTAGCGGGACCGACAGCATGCAGAGAGGGACCGGGCTGATCCCCGACTTACG
196 ACAGAGGGTTGTAGTAGTGGGACCGACAGCATGCAGAGAGGGACCGGGCCGATCCCCGACTTGCG
* *
22958281 CATTATGCATCTTCGATTGGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACAG
261 CATTATGCATCTTCGACTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACAG
* * *
22958346 AGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTACAGTAGGAAGGTCGACAGCACGCAG
326 AGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGTAGG-AGGTCGACAGCACGCAG
* *
22958411 GGGGGATCGGGTCGAT-CCTCGGCTTGTGCATTCTGCCTCTTCGATCGGCTGAGCGCCCACACGC
390 GGGGGATCGGGTCGATCCCT-GGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGC
*
22958475 TCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATCCTCAGTCTAA
454 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCT-AGTCTAA
* * * * * *
22958522 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGACCGAGGGCTGCGGCAGCAGGATTGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGACAACAGGATCGAC
* * * * * ** * *
22958586 AGTACGCAGGGGAGATC-AGGTCGATCCCCGGCTTGCGTTTTCTGCCTCTTCGGTCGACTGAGCG
65 AGCACGCAGGGGGGACCGA-GCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCG
* * *
22958650 CCTGTATC-CCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
129 CCCGCA-CGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
* * *
22958714 CGGACAGAGTGTTGTGGTAATGGGACCGACAGCATGCAGA-AGGGGACCGGGCCGATCCCC-AGC
193 CGGACAGAGGGTTGTAGTAGTGGGACCGACAGCATGCAGAGA-GGGACCGGGCCGATCCCCGA-C
* * * * * * *
22958777 TTGTGCATTATG-ACTCTCCGACCGGTTCAGTGCCCGTACGCTCATTTTGTGGGTTGACTT-TGG
256 TTGCGCATTATGCA-TCTTCGACTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAT-G
* * * * * * *
22958840 CATACGGAGTTCATTCTCAGTCTAAGACCGGACTGGACCGAGGGTTGCGGCAGCAGGATCAACAG
319 CATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGTAGGAGG-TCGACAG
* * * * *
22958905 CACGCAGGGGGGATCGGGTCGATCCCTGACTTATACATTCTACCTCTCCGACCGGCTGAGCGCCC
383 CACGCAGGGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
* * * *
22958970 GCACGCTCGTTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCC-ATGTCTAA
448 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA-TCCTA-GTCTAA
* **
22959023 GCATACAGAGTTCATTCCCAGTCTAAGATCAAATTGGACCGAGGGTTGTGGCAGTAGGACCAGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG-T-T-GC-----GA-CA--A
* * * *
22959088 GCAGGATCGACAGCACGCAGGGGGGACCGGGTCGAT-CCTCGGCTTGCGTATTCTGCCTCTCCGA
55 -CAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGG
* ** * * * *
22959152 CCGGCTGAGCGCTAGCACGCTCGTTTTGTGGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCT
118 CCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
*
22959217 AAGCCCCAGTCGGACCGAGGGTTGT
183 AAGCCCCAGTCGGACAGAGGGTTGT
22959242 GGCAGCAGGA
Statistics
Matches: 1033, Mismatches: 151, Indels: 62
0.83 0.12 0.05
Matches are distributed among these distances:
498 7 0.01
499 2 0.00
500 19 0.02
501 857 0.83
502 13 0.01
503 1 0.00
504 2 0.00
509 1 0.00
510 2 0.00
512 3 0.00
513 126 0.12
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (499 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAACAGGATCGACA
GCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCC
CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
ACAGAGGGTTGTAGTAGTGGGACCGACAGCATGCAGAGAGGGACCGGGCCGATCCCCGACTTGCG
CATTATGCATCTTCGACTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACAG
AGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGTAGGAGGTCGACAGCACGCAGG
GGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCTAGTCTAA
Found at i:22958532 original size:26 final size:26
Alignment explanation
Indices: 22958496--22958548 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22958486 GTTAACTTAG
22958496 GCATACAGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
*
22958522 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22958548 G
1 G
22958549 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22958668 original size:184 final size:184
Alignment explanation
Indices: 22958338--22958707 Score: 433
Period size: 184 Copynumber: 2.0 Consensus size: 184
22958328 GTTGACTTAT
* *
22958338 GCATACAGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTACAGTAGGAAGGTCGACA
1 GCATACAGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGCTACAGCAGGAAGGTCGACA
* * * * *
22958403 GCACGCAGGGGGGATCGGGTCGATCCTCGGCTTGTGCATTCTGCCTCTTCGATCGGCTGAGCGCC
66 GCACGCAGGGGAGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGACTGAGCGCC
* *
22958468 CACACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATCCTCA-GTCTAA
131 CACACGCCCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATCC-CATGTCTAA
* * * * * *
22958522 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGACCGAGGGCTGCGGCA-GCAGGATTGA
1 GCATACAGAGTTCATTCCCAATCTAAGATCAG-ACTGGACCGAGGGCTACAGCAGGAAGG-TCGA
* ** *
22958585 CAGTACGCAGGGGAGATCAGGTCGATCCCCGGCTTGCGTTTTCTGCCTCTTCGGTCGACTGAGCG
64 CAGCACGCAGGGGAGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGACTGAGCG
*** ** ** *
22958650 CCTGTATC-CCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
129 CCCACA-CGCCCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATCCCATGTCTAA
22958706 GC
1 GC
22958708 CCCAGTCGGA
Statistics
Matches: 155, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
183 7 0.05
184 147 0.95
185 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGCTACAGCAGGAAGGTCGACA
GCACGCAGGGGAGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGACTGAGCGCC
CACACGCCCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATCCCATGTCTAA
Found at i:22959027 original size:26 final size:26
Alignment explanation
Indices: 22958997--22959049 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22958987 GTTGGCTTAG
*
22958997 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
22959023 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22959049 G
1 G
22959050 ATCAAATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22959422 original size:26 final size:26
Alignment explanation
Indices: 22959380--22959429 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
22959370 GACTTAGGCG
22959380 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAGTCTAAGCA
* *
22959406 TACGGAGTTGATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
22959430 ATCAGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCA
Found at i:22959929 original size:26 final size:26
Alignment explanation
Indices: 22959881--22959930 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
22959871 GGCTTAGGCA
*
22959881 TACGGAGTTCATTCCATGTCTAAGCG
1 TACGGAGTTCATTCCATGACTAAGCG
22959907 TACGGAGTTCATTCCCA-GACTAAG
1 TACGGAGTTCATT-CCATGACTAAG
22959931 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCATGACTAAGCG
Found at i:22966538 original size:26 final size:26
Alignment explanation
Indices: 22966501--22966553 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22966491 GTTGACTTAG
*
22966501 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
22966527 GCATAC-AGAGTTCATTCCCAATCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
22966553 G
1 G
22966554 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:22967012 original size:26 final size:26
Alignment explanation
Indices: 22966983--22967035 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22966973 GTTGGCTTAG
22966983 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
22967009 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22967035 G
1 G
22967036 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22967387 original size:26 final size:26
Alignment explanation
Indices: 22967357--22967409 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22967347 GTTGACTTAG
22967357 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
22967383 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
22967409 G
1 G
22967410 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:22968168 original size:158 final size:159
Alignment explanation
Indices: 22967419--22970369 Score: 752
Period size: 158 Copynumber: 18.0 Consensus size: 159
22967409 GATCGGATCG
* ** * * * * * *
22967419 GACCGAGGGTTGCGAAAGCAGGATCGACAGCACGCAG-TGGGGACCAGGCCGATTCCCAACTTGC
1 GACCGAGGGTTGTGGCAGCGGGATCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGC
* *
22967483 GCATTCTGCCTCTTCGGCCAGCTGAGCGCCTGCACGC-CTATTTCGTGGGTTGGCTTAGGCATAG
66 GCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTC-ATTTCGTGGGTTGGCTTAGGCATAG
* *
22967547 GGAGTTCATTCCATGTCTAAGCCCCAGCCG
130 GGAGTTCATTCCATGTCTAAGCACCAGCCA
* * * * * * * * *
22967577 GACCGAGGGTTATGGCAGCGGGATTGGCAGCATGCA-TGGGGGACCGAGCCGATCCCCGGCTTAC
1 GACCGAGGGTTGTGGCAGCGGGATCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGC
* ** * * * * * *
22967641 GCATTCTACCTCTTCGATCGGATGAGCACCCACACACTCGTTTCATGGGTTGGCTTAGGCATAGG
66 GCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGG
* * * * *
22967706 GAGTTCATTGCATGTGTAAGCTCCAGTCG
131 GAGTTCATTCCATGTCTAAGCACCAGCCA
* * * * *
22967735 GACCGAGGGTTGTGGCAGCGGGATCGACAGCATGTAGAGGGGGATCGGGCTGATCCCTGGCTTGC
1 GACCGAGGGTTGTGGCAGCGGGATCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGC
* * * ** * * * * ** * *
22967800 GTATTATGCCTCTCCGGCTAGCTCAACACTCGCACAATCATTTCGTGGGTTGACTTAGGCATACG
66 GCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGG
* * * *
22967865 GAGTTCATTCCCA-GTGTAAG-ATCGGATCA
131 GAGTTCATT-CCATGTCTAAGCACCAG-CCA
* ** ** * * **
22967894 GACCGAGGGTTGCGATAGTAGGATCGGACCA-CACGTAG-TGAGGACCGGGCTAATCCCC-AGCT
1 GACCGAGGGTTGTGGCAGCGGGATC-GA-CAGCACGTAGAGGGGGACCGGGCCGATCCCCGA-CT
* * * * * * *
22967956 TGTGCATTCTGCCTTTTCGGCCGGATGAGTGCCCGTATGCTCGTTTCGTGGGTTGGCTTAGGCAT
63 TGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
*
22968021 AGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
128 AGGGAGTTCATTCCATGTCTAAGCACCAGCCA
* * *
22968053 GACCGAGGGTTGTGTCTA-TGGGA-CGATAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTG
1 GACCGAGGGTTGTGGC-AGCGGGATCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTG
* * * * * * * *
22968116 CGCATTATGCCTCTTCGGCCGGCTCAACGCCCGTACGCTCATTTCATGGGTTGACTTATGCATAC
65 CGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAG
*
22968181 GGAGTTCATTCCCA-GTCTAAG-ATCAGACCA
130 GGAGTTCATT-CCATGTCTAAGCACCAG-CCA
* * * * * *
22968211 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACG--CA-GGGGATCGAGCTGATCCTACG-CTTG
1 GACCGAGGGTTGTGGCAGCGGGATCGACAGCACGTAGAGGGGGACCGGGCCGATCC-CCGACTTG
* * * * * * * * * ** *
22968272 CACATTCTGCCTCTCCAGTCGGCTGAGCACCCGTACGCTCGTTTTGTTGGTTAACTTAGGCATAC
65 CGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAG
* * * *
22968337 AGAGTTCATCTGCA-GTCTAAGCATACGGAGTTCA
130 GGAGTTCAT-TCCATGTCTAAGC--AC-CAG-CCA
** * ** * * * ** * *
22968371 CTCCTAGTCTAAGATTGG-A-CCGGACCGAGGGTTGTGCA-GTAGGATCGGTAGCACGCAGGGGG
1 GACCGAGGGT-TG--TGGCAGCGGGATCGA-----CAGCACGTA-GA--GG-GGGAC-C---GGG
* * * * * * * *
22968433 ATCGAGCCGATCCTCGGCTTGCGCATTCTACCAC-TC-CCCAGCTGAGCGCCC-TACGGC-CATT
50 -CC-----GATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCAC-GCTCATT
** * * *
22968494 TCGTGGAATGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
108 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGCCA
* * * * *
22968546 GACCGAGGGTTGTGGCAGCGGG-GCGACAGCACGCA-AGGGGGACCGAGTCGATCCCCGGCTTGC
1 GACCGAGGGTTGTGGCAGCGGGATCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGC
* * * * * * * * * * * *
22968609 GCATTATGCCTC-TCGACCGACTCAACACCCACACACTCGTCTCGTGGGTTGACTTAGGCATACG
66 GCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGG
* * *
22968673 GAGTTCATTCCCTGTCTAAG-ATCGGACCA
131 GAGTTCATTCCATGTCTAAGCACCAG-CCA
* ** * * * * * * * *
22968702 GACC-AAGGTTACGGTAGCAGGATCGATAGGACGTAGA-GGGGACCAGGCTGATCCCCG-CTCGT
1 GACCGAGGGTTGTGGCAGCGGGATCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGC
* ** * * * * *
22968764 GCA-TCTGCCTCTCCGATCGGCCGAGCACCTGTACGCTCATCTTCGTGGGTTGGCTTA-GCATAC
66 GCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCAT-TTCGTGGGTTGGCTTAGGCATAG
* *
22968827 GGAGTTCATTCCATGTCTAAGCATACGGAGTTCA
130 GGAGTTCATTCCATGTCTAAGC--AC-CAG-CCA
** * ** * * * * * * *
22968861 CTCCCA-TCTAAGATCGGACGACCGATGGTTGTGGCAGCAGGATCAGTAGCACGCAGGGGGATCA
1 GACCGAGGGT-TG-T-GG-C-AGCG--GG--ATCG-A-CAGCA-C-GT---A-G-AGGGGGACCG
* * ** * * *
22968925 GGCCGAT-CCCTAGCTTGCGCATTCTGCCTC-TCCG-ATGCTGAGCACCCGTACGCTCGTTTCGT
48 GGCCGATCCCCGA-CTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCATTTCGT
* ** * * *
22968987 GGGTTCGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCCGCCG
112 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGCCA
* * * * * * *
22969035 GACTGAGGGTTGTGGCAGCAGGACCAGCAGTAGGATCGGTAGCACGCAGAAGGGGATCAGGCTGA
1 GACCGAGGGTTGTGGCAGC-GG----G-A-T-CGA-C---AGCACGTAGAGGGGGACCGGGCCGA
* * * ** * ** * * ** * *
22969100 TCCCCGAATTGTGCATTATGAGTCTCCAACCGTCTGAGCGACCGCACGCTTGTTTCATGGGTTGA
54 TCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGG
* * * * * *
22969165 CTCAGGCATACGGAGTTCCTCCCCA-GTCTAAGCATACGGAGTTCA
119 CTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC--AC-CAG-CCA
** * ** * * * * *
22969210 TTCCTAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGGATCAATAGTACGGAGTGGGAC
1 GACCGAGGGT-TG-T--G-GC--A--GCGGGAT-CGACAGC---A-C----GTA--GAGGGGGAC
* * * * * ** * * * *
22969275 CAGGCCGATCCCTGGCTTACGCATTCTGCCAC-TCTAACCGGCTGAGCGCCCGTATGCCCGTTTC
46 CGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTC-GGCCGGCTGAGCGCCCGCACGCTCATTTC
* * * * * *
22969339 GTGGGTTAGCTTAGGCATAGGGAGTTCATTCAATGTCGAAGCCCCAGTCG
110 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGCCA
* * * * * * * * * *
22969389 GACCGAGGGTTGTGGCTGTGGGATTGGCAGCATGTAGAGGGGGATCAGGTCAATCCCCGGCTTGC
1 GACCGAGGGTTGTGGCAGCGGGATCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGC
* * * * * * * *
22969454 GCATTATGCCTCTCCGGCTGGCTCAGCGCCAGCACGCTCATTTTCGTGGGTTGACTTAGGTATAC
66 GCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCA-TTTCGTGGGTTGGCTTAGGCATAG
* * * ***
22969519 GGAGTTCGTTCCCA-GTCTAAG-ATCGGATTG
130 GGAGTTCATT-CCATGTCTAAGCACCAG-CCA
* * ** * * * * *
22969549 GACTGAGGGTTGCGGCAGCAAGATCGATAGCACGTAGA--GGGATCGGGTCGATCCCCGGCTTGT
1 GACCGAGGGTTGTGGCAGCGGGATCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGC
* * * * * * *
22969612 GCATTCTGCCTCTCCGACCGACTGAGTGCCCGCACAC-CTGTTTCATGGGTTGGCTTAGGCATAG
66 GCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTC-ATTTCGTGGGTTGGCTTAGGCATAG
* *
22969676 GGAGTTCATTCCATGTCTAACGC-CCAGTCG
130 GGAGTTCATTCCATGTCTAA-GCACCAGCCA
* * * ** *
22969706 GACCGAGGGTTATGGCTGCGGGACCGGCAGTGGGATTGGCAGCACGCGGAGGGGGACCGGGCTGA
1 GACCGAGGG-T-T-G-T--------GGCAGCGGGATCGACAGCACGTAGAGGGGGACCGGGCCGA
** * * * *
22969771 TCCCCGACTTGCATATTATGCCTC-TCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTG
54 TCCCCGACTTGCGCATTCTGCCTCTTC-GGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTG
* * * *
22969835 ACTTAGGCATACGGAGTTCATCACCA-GTCTAAGCATACGAAGTTCATTCCCA
118 GCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC--AC------CA--GCCA
* * * * * * * * * ** *
22969887 TTCTAAGTCGAAAGGAATCGAGGGTTGCAGCAGTA-GGATCGGCA-GTACGCAAGGGGGGTCAGG
1 ----GA-CCG--AGG-GTTG----TGGCAGCGGGATCGA-CAGCACGTA-G--AGGGGGACCGGG
* * * *** * * * *
22969950 CCGATCCCAGGCTTGCGCATTCTGCCTCTCCAATCGGCTGAGCGCCCGTACTCCCATTTTGTGGG
50 CCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGG
22970015 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC-CCTAGCCA
115 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACC-AGCCA
* * * * * *
22970060 GACCGAGGGTTGTTGCAGTGGGACCGGCAGCACGTAGAGGGAGACCGGGCCGATCCCCGGCTTGC
1 GACCGAGGGTTGTGGCAGCGGGATCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGC
* * * * * * * ** * * * **
22970125 GCATTATGCCTCTTCGACCGGCTCAGTGCCTGCTCGCTCGTTTCAAGGGTTGACTTATGCGTACA
66 GCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGG
* * **
22970190 GAGTTCATTCCCA-GTCTAAG-ATCGGACTG
131 GAGTTCATT-CCATGTCTAAGCACCAG-CCA
* *** * * * * * * * ** * *
22970219 GACCCAGGGTTACCGCAGCAGGATCGATAGAACGCA-TGGGGGACCAGGTCGATCCAAGGCTTGT
1 GACCGAGGGTTGTGGCAGCGGGATCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGC
* * * * * * * *
22970283 GCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGTACGCTCGTTTCATAGGTTGGCTTAGGCATACG
66 GCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGG
*
22970348 TAGTTCATTCCATGTCTAAGCA
131 GAGTTCATTCCATGTCTAAGCA
22970370 TACGGAGTTC
Statistics
Matches: 1999, Mismatches: 602, Indels: 383
0.67 0.20 0.13
Matches are distributed among these distances:
154 31 0.02
155 73 0.04
156 176 0.09
157 67 0.03
158 415 0.21
159 393 0.20
160 95 0.05
161 28 0.01
162 7 0.00
163 4 0.00
164 5 0.00
165 5 0.00
166 9 0.00
167 1 0.00
168 8 0.00
169 54 0.03
170 20 0.01
171 137 0.07
172 16 0.01
173 18 0.01
174 14 0.01
175 18 0.01
176 12 0.01
177 26 0.01
178 62 0.03
179 55 0.03
180 27 0.01
181 18 0.01
182 26 0.01
183 168 0.08
184 2 0.00
185 1 0.00
186 3 0.00
188 4 0.00
189 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GACCGAGGGTTGTGGCAGCGGGATCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGC
GCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCACCAGCCA
Found at i:22968236 original size:317 final size:317
Alignment explanation
Indices: 22967419--22968246 Score: 880
Period size: 317 Copynumber: 2.6 Consensus size: 317
22967409 GATCGGATCG
* ** * * * * * *
22967419 GACCGAGGGTTGCGAAAGCAGGATCGACAGCACGCAG-TGGGGACCAGGCCGATTCCCAACTTGC
1 GACCGAGGGTTGTGGCAGCGGGATCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGC
* * * * * *
22967483 GCATTCTGCCTCTTCGGCCAGCTGAGCGCCTGCACGC-CTATTTCGTGGGTTGGCTTAGGCATAG
66 GCATTATGCCTCTTCGGCCAGCTCAACGCCCGCACGCTC-ATTTCGTGGGTTGACTTAGGCATAC
** * * * * *
22967547 GGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTATGGCAGCGGGATTGGCAGCAT
130 GGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCAC
* * * *
22967610 GCATGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTTCGATCGGATGAGCACCCACA
193 GCATGGAGGACCGAGCCAATCCCCAGCTTACGCATTCTACCTCTTCGACCGGATGAGCACCCACA
* * * * *
22967675 CACTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTGTAAGCTCCAGTCG
258 CACTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * *
22967735 GACCGAGGGTTGTGGCAGCGGGATCGACAGCATGTAGAGGGGGATCGGGCTGATCCCTGGCTTGC
1 GACCGAGGGTTGTGGCAGCGGGATCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGC
* * * * * **
22967800 GTATTATGCCTCTCCGGCTAGCTCAACACTCGCACAATCATTTCGTGGGTTGACTTAGGCATACG
66 GCATTATGCCTCTTCGGCCAGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
* * * * ** *
22967865 GAGTTCATTCCCAGTGTAAGATCGGATCAGACCGAGGGTTGCGATAGTAGGATCGGACCA-CACG
131 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGG--CAGCACG
* * * ** * * * ** **
22967929 TA-GTGAGGACCGGGCTAATCCCCAGCTTGTGCATTCTGCCTTTTCGGCCGGATGAGTGCCCGTA
194 CATG-GAGGACCGAGCCAATCCCCAGCTTACGCATTCTACCTCTTCGACCGGATGAGCACCCACA
** *
22967993 TGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
258 CACTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * *
22968053 GACCGAGGGTTGTGTCTA-TGGGA-CGATAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTG
1 GACCGAGGGTTGTGGC-AGCGGGATCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTG
* * * *
22968116 CGCATTATGCCTCTTCGGCCGGCTCAACGCCCGTACGCTCATTTCATGGGTTGACTTATGCATAC
65 CGCATTATGCCTCTTCGGCCAGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
*
22968181 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
130 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGC
22968246 A
195 A
22968247 GGGGATCGAG
Statistics
Matches: 410, Mismatches: 93, Indels: 18
0.79 0.18 0.03
Matches are distributed among these distances:
315 2 0.00
316 38 0.09
317 243 0.59
318 124 0.30
319 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (317 bp):
GACCGAGGGTTGTGGCAGCGGGATCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGC
GCATTATGCCTCTTCGGCCAGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCA
TGGAGGACCGAGCCAATCCCCAGCTTACGCATTCTACCTCTTCGACCGGATGAGCACCCACACAC
TCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
Found at i:22968367 original size:26 final size:26
Alignment explanation
Indices: 22968331--22968383 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22968321 GTTAACTTAG
*
22968331 GCATACAGAGTTCATCTGC-AGTCTAA
1 GCATACAGAGTTCA-CTCCTAGTCTAA
*
22968357 GCATACGGAGTTCACTCCTAGTCTAA
1 GCATACAGAGTTCACTCCTAGTCTAA
22968383 G
1 G
22968384 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCTAGTCTAA
Found at i:22969017 original size:178 final size:180
Alignment explanation
Indices: 22968666--22969026 Score: 457
Period size: 178 Copynumber: 2.0 Consensus size: 180
22968656 GTTGACTTAG
* * *
22968666 GCATACGGAGTTCATTCCCTGTCTAAGATCGGACCAGACCAAGGTTACGGTAGCAGGATCGATAG
1 GCATACGGAGTTCACTCCCTATCTAAGATCGGACCAGACCAAGGTTACGGCAGCAGGATCGATAG
* * * * * *
22968731 GACGTAGAGGGGACCAGGCTGATCCCCGCTCGTGCATCTGCCTCTCCGATCGGCCGAGCACCTGT
66 CACGCAGAGGGGACCAGGCCGATCCCAGCTCGCGCATCTGCCTCTCCGATC-GCCGAGCACCCGT
* *
22968796 ACGCTCATCTTCGTGGGTTGGCTTAGCATACGGAGTTCATTCCATGTCTAA
130 ACGCTCATCTTCGTGGGTTCGCTTAGCATACAGAGTTCATTCCATGTCTAA
* **
22968847 GCATACGGAGTTCACTCCC-ATCTAAGATCGGA-C-GACCGATGGTTGTGGCAGCAGGATC-AGT
1 GCATACGGAGTTCACTCCCTATCTAAGATCGGACCAGACC-AAGGTTACGGCAGCAGGATCGA-T
* * *
22968908 AGCACGCAG-GGGGATCAGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGAT-GCTGAGCACC
64 AGCACGCAGAGGGGACCAGGCCGATCCC-AGCTCGCGCA-TCTGCCTCTCCGATCGCCGAGCACC
*
22968971 CGTACGCTCGT-TTCGTGGGTTCGCTTAGGCATACAGAGTTCATTCCATGTCTAA
127 CGTACGCTCATCTTCGTGGGTTCGCTTA-GCATACAGAGTTCATTCCATGTCTAA
22969025 GC
1 GC
22969027 CCCCGCCGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 13
0.84 0.10 0.07
Matches are distributed among these distances:
177 15 0.10
178 66 0.42
179 32 0.20
180 26 0.17
181 18 0.11
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (180 bp):
GCATACGGAGTTCACTCCCTATCTAAGATCGGACCAGACCAAGGTTACGGCAGCAGGATCGATAG
CACGCAGAGGGGACCAGGCCGATCCCAGCTCGCGCATCTGCCTCTCCGATCGCCGAGCACCCGTA
CGCTCATCTTCGTGGGTTCGCTTAGCATACAGAGTTCATTCCATGTCTAA
Found at i:22969206 original size:26 final size:26
Alignment explanation
Indices: 22969170--22969222 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22969160 GTTGACTCAG
*
22969170 GCATACGGAGTTCCTCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
22969196 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22969222 G
1 G
22969223 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22970282 original size:671 final size:669
Alignment explanation
Indices: 22968847--22970368 Score: 1794
Period size: 671 Copynumber: 2.3 Consensus size: 669
22968837 CCATGTCTAA
* * * *
22968847 GCATACGGAGTTCACTCCCA-TCTAAGATCGGAC--GACCGATGGTTGTGGCAGCAGGATC-AGT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGA-T
* * * * *
22968908 AGCACGCAGGGGGATCAGGCCGATCCCTA-GCTTGCGCATTCTGCCTCTCCGATGCTGAGCACCC
65 AGCACGCAGGGGGATCAGGTCGAT-CCAAGGCTTGTGCATTCTGCCTCTCCGACGCTGAGCGCCC
* * * *
22968972 GTACGCTCGTTTCGTGGGTTCGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCCGCCGGA
129 GTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
* * * *
22969037 CTGAGGGTTGTGGCAGCAGGACCAGCAGTAGGATCGGTAGCACGCAGAAGGGGATCAGGCTGATC
194 CCGAGGGTTATGGCAGCAGGACCAGCAGTAGGATCGGCAGCACGCAGAAGGGGACCAGGCTGATC
** * * *
22969102 CCCGAATTGTGCATTATGAGTCTCCAACCGTCTGAGCGACCGCACGCTTGTTTCATGGGTTGACT
259 CCCGAATTGCACATTATGACTCTCCAACCGGCTGAGCGACCGCACGCTCGTTTCATGGGTTGACT
* * * * *
22969167 CAGGCATACGGAGTTCCTCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCA
324 CAGGCATACGGAGTTCATCACCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACAA
* * * *
22969232 AACCGAGGGTTGCGACAGCAGGATCAATAGTACGGAGTGGGACCAGGCCGATCCCTGGCTTACGC
389 AACCGAGGGTTGCGACAGCAGGATCAACAGTACGAAGGGGGACCAGGCCGATCCCAGGCTTACGC
* *
22969297 ATTCTGCCACTCTAACCGGCTGAGCGCCCGTATGCCCGTTTCGTGGGTTAGCTTAGGCATAGGGA
454 ATTCTGCCACTCCAACCGGCTGAGCGCCCGTATGCCCATTTCGTGGGTTAGCTTAGGCATAGGGA
* * * ** *
22969362 GTTCATTCAATGTCGAAGCCCCAGTCGGACCGAGGGTTGTGGCTGTGGGATTGGCAGCATGTAGA
519 GTTCATTCAATGTCGAAGCCCCAGCCAGACCGAGGGTTGTGGCAGTGGGACCGGCAGCACGTAGA
* * * * *
22969427 GGGGGATCAGGTCAATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGCGCCAGCACGCT
584 GGGAGACCAGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCAGCACGCT
* **
22969492 CATTTTCGTGGGTTGACTTAG
649 CAGTTTCAAGGGTTGACTTAG
* * * * * *
22969513 GTATACGGAGTTCGTTCCCAGTCTAAGATCGGATTGGACTGAGGGTTGCGGCAGCAAGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGATA
* * * ** *
22969578 GCACGTAGAGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGTGCCC
66 GCACGCAGGGGGATCAGGTCGATCCAAGGCTTGTGCATTCTGCCTCTCCGA-CG-CTGAGCGCCC
* * * *
22969643 GCACAC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA-CGCCCAGTCG
129 GTACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC-CCCAGCCG
* * * * * * * *
22969706 GACCGAGGGTTATGGCTGCGGGACCGGCAGTGGGATTGGCAGCACGCGGAGGGGGACCGGGCTGA
192 GACCGAGGGTTATGGCAGCAGGACCAGCAGTAGGATCGGCAGCACGCAGAAGGGGACCAGGCTGA
* * * *** * *
22969771 TCCCCGACTTGCATATTATGCCTCTCTGGCTGGCTGAGC-ACCCGCACGCTCGTTTCGTGGGTTG
257 TCCCCGAATTGCACATTATGACTCTCCAACCGGCTGAGCGA-CCGCACGCTCGTTTCATGGGTTG
* *
22969835 ACTTAGGCATACGGAGTTCATCACCAGTCTAAGCATACGAAGTTCATTCCCATTCTAAG-TC-GA
321 ACTCAGGCATACGGAGTTCATCACCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
* * ** **
22969898 -AAGGAATCGAGGGTTGC-AGCAGTAGGATCGGCAGTACGCAAGGGGGGTCAGGCCGATCCCAGG
386 CAA--AACCGAGGGTTGCGA-CAGCAGGATCAACAGTACG-AAGGGGGACCAGGCCGATCCCAGG
* * * * *
22969961 CTTGCGCATTCTGCCTCTCCAATCGGCTGAGCGCCCGTACT-CCCATTTTGTGGGTTGGCTTAGG
447 CTTACGCATTCTGCCACTCCAACCGGCTGAGCGCCCGTA-TGCCCATTTCGTGGGTTAGCTTAGG
* * * *
22970025 CATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTTGCAGTGGGACCGGCAG
511 CATAGGGAGTTCATTCAATGTCGAAGCCCCAGCCAGACCGAGGGTTGTGGCAGTGGGACCGGCAG
* * * *
22970090 CACGTAGAGGGAGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGTGCC
576 CACGTAGAGGGAGACCAGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCC
* * *
22970155 TGCTCGCTC-GTTTCAAGGGTTGACTTAT
641 AGCACGCTCAGTTTCAAGGGTTGACTTAG
* * * *
22970183 GCGTACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCCAGGGTTACCGCAGCAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGATA
* * * *
22970248 GAACGCATGGGGGACCAGGTCGATCCAAGGCTTGTGCATTCTGCCTCTCCGGTCGGTTGAGCGCC
66 GCACGCA-GGGGGATCAGGTCGATCCAAGGCTTGTGCATTCTGCCTCTCC-GAC-GCTGAGCGCC
* *
22970313 CGTACGCTCGTTTCATAGGTTGGCTTAGGCATACGTAGTTCATTCCATGTCTAAGC
128 CGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
22970369 ATACGGAGTT
Statistics
Matches: 711, Mismatches: 125, Indels: 34
0.82 0.14 0.04
Matches are distributed among these distances:
666 17 0.02
667 12 0.02
668 3 0.00
669 67 0.09
670 109 0.15
671 498 0.70
672 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (669 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGATA
GCACGCAGGGGGATCAGGTCGATCCAAGGCTTGTGCATTCTGCCTCTCCGACGCTGAGCGCCCGT
ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
GAGGGTTATGGCAGCAGGACCAGCAGTAGGATCGGCAGCACGCAGAAGGGGACCAGGCTGATCCC
CGAATTGCACATTATGACTCTCCAACCGGCTGAGCGACCGCACGCTCGTTTCATGGGTTGACTCA
GGCATACGGAGTTCATCACCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACAAAA
CCGAGGGTTGCGACAGCAGGATCAACAGTACGAAGGGGGACCAGGCCGATCCCAGGCTTACGCAT
TCTGCCACTCCAACCGGCTGAGCGCCCGTATGCCCATTTCGTGGGTTAGCTTAGGCATAGGGAGT
TCATTCAATGTCGAAGCCCCAGCCAGACCGAGGGTTGTGGCAGTGGGACCGGCAGCACGTAGAGG
GAGACCAGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCAGCACGCTCA
GTTTCAAGGGTTGACTTAG
Found at i:22970371 original size:26 final size:25
Alignment explanation
Indices: 22970341--22970392 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
22970331 GTTGGCTTAG
*
22970341 GCATACGTAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
22970367 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
22970392 G
1 G
22970393 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:22971099 original size:26 final size:26
Alignment explanation
Indices: 22971063--22971114 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
22971053 TTGACTTAGC
22971063 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
22971089 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
22971115 ATCAAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:22971969 original size:26 final size:26
Alignment explanation
Indices: 22971939--22971991 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22971929 GTAGACTTAG
*
22971939 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATACCCAATCTAA
*
22971965 GCATACAGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAATCTAA
22971991 G
1 G
22971992 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAATCTAA
Found at i:22972217 original size:367 final size:354
Alignment explanation
Indices: 22971719--22972543 Score: 870
Period size: 354 Copynumber: 2.3 Consensus size: 354
22971709 TCCGGCTAGT
* * * * *
22971719 TGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAATTCATTCCATGTCTAAGCC
1 TGAGCGCCCGCACTCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * ** *
22971784 CTAGCCAGACTGAGGGTTGTGG-TAGCAGGACCAACAACAGGATCGACAGCACGCAGAGGGGGAC
66 CTAGCCAGACCGAGGGTTGTGGCT-GCGGGACCGGCAGCAGGATCGACAGCACGCAGAGGGGGAC
** * * *
22971848 CGGGCTAATCCTTGGCTTGTGCATTATTCCTCTTCGATCGGCCTCTCCGGCCGGCTGAGCGCTCG
130 CGGGCTAATCCCCGAC-T-TGCA-TA------TT--AT--GCCTCTCCGGCCGGCTGAGCACCCG
* *
22971913 TACGCTCATTTCATGGGTAGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATAC-AGAGTT
182 CACGCTCATTTCATGGGTAGACTTAGGCATACAGAGTTCATCACCAATCTAAGCATACGA-AGTT
** ** * * *
22971977 CATACCCAGTCTAAGATCAGACTGG-ACCGAGGGTTGTGGCTGCAGGATCGATAGCACG-TAGGG
246 CATACCCAGTCTAAG-TC-GAAAGGAACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAAGGG
* * * **
22972040 GGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGAC
309 GGATCAGGCCGATCCCAGGCTTGCGCATTCTGCCTCTCCAATCGAC
** ** *
22972086 TGAGCGCTTGCACGT-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACG
1 TGAGCGCCCGCAC-TCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA-G
* * * ** * * *
22972150 CCC-AGTCGGACCGAGGGTTATGGCTGCGGGACCGGCAGTGGGATTGGCAGCACGCGGAGGGGGA
64 CCCTAGCCAGACCGAGGGTTGTGGCTGCGGGACCGGCAGCAGGATCGACAGCACGCAGAGGGGGA
* * * *
22972214 CCGGGCTGATCCCCGACTTGCATATTATGCCTCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTC
129 CCGGGCTAATCCCCGACTTGCATATTATGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCATTTC
* * * * * *
22972279 GTGGGTTGACTTAGGCATACGGAGTTCATCACCAGTCTAAGCATACGAAGTTCATTCCCATTCTA
194 ATGGGTAGACTTAGGCATACAGAGTTCATCACCAATCTAAGCATACGAAGTTCATACCCAGTCTA
* * * * *
22972344 AGTCGAAAGGAATCGAGGGTTGCAGCAGTAGGATCGGCAGTACGCAAGGGGGGTCAGGCCGATCC
259 AGTCGAAAGGAACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAAGGGGGATCAGGCCGATCC
*
22972409 CAGGCTTGCGCATTCTGCCTCTCCAATCGGC
324 CAGGCTTGCGCATTCTGCCTCTCCAATCGAC
* *
22972440 TGAGCGCCCGTACTCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
1 TGAGCGCCCGCACTCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * *
22972505 CTAGCCAGACCGAGGGTTGTTGCAGTGGGACCGGCAGCA
66 CTAGCCAGACCGAGGGTTGTGGCTGCGGGACCGGCAGCA
22972544 CGTAGAGGGA
Statistics
Matches: 377, Mismatches: 73, Indels: 29
0.79 0.15 0.06
Matches are distributed among these distances:
352 4 0.01
353 32 0.08
354 214 0.57
355 1 0.00
356 2 0.01
358 2 0.01
364 2 0.01
365 4 0.01
366 1 0.00
367 110 0.29
368 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (354 bp):
TGAGCGCCCGCACTCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
CTAGCCAGACCGAGGGTTGTGGCTGCGGGACCGGCAGCAGGATCGACAGCACGCAGAGGGGGACC
GGGCTAATCCCCGACTTGCATATTATGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCATTTCAT
GGGTAGACTTAGGCATACAGAGTTCATCACCAATCTAAGCATACGAAGTTCATACCCAGTCTAAG
TCGAAAGGAACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAAGGGGGATCAGGCCGATCCCA
GGCTTGCGCATTCTGCCTCTCCAATCGAC
Found at i:22972823 original size:26 final size:25
Alignment explanation
Indices: 22972793--22972844 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
22972783 GTTGGCTTAG
*
22972793 GCATACGTAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
22972819 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
22972844 G
1 G
22972845 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:22973552 original size:26 final size:26
Alignment explanation
Indices: 22973516--22973567 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
22973506 TTGACTTAGC
22973516 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
22973542 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
22973568 ATCAAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:22974422 original size:26 final size:26
Alignment explanation
Indices: 22974392--22974444 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22974382 GTAGACTTAG
*
22974392 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATACCCAATCTAA
** *
22974418 GCATATGGAGTTCATACCCACTCTAA
1 GCATACAGAGTTCATACCCAATCTAA
22974444 G
1 G
22974445 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAATCTAA
Found at i:22974778 original size:159 final size:157
Alignment explanation
Indices: 22974415--22974832 Score: 386
Period size: 159 Copynumber: 2.6 Consensus size: 157
22974405 ATCCCCAATC
* * * * * *
22974415 TAAGCATATGGAGTTCATACCCACTCTAAGATCAGACCGGACCGAGGGTTGTGGCTGCAGGATCG
1 TAAGCATATGGGGTTCATTCCCAGTCTAAGAT-TGATCGGA-CGAGGGTTGTGGCAGCAGGATCG
* * * * * *
22974480 ATAGCACGC--AGGGGGACCGGGCCGATCCCCGGCTTGTGGATTCTGCCTCTCCGGTCGGTTGAG
64 ACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCAGTCCGTTCAG
*
22974543 CGCCCGCAAGTCTGTTTCATGGGTTGGCT
129 CGCCCGCAAGTCTGTTTCATGGGTTGACT
** * *
22974572 TAAGCATA-GGGAGTTCATT-CCATGTCTAAGCCCCTG-TCAGACTGAGGGTTGTGGCAGCGGGA
1 TAAGCATATGGG-GTTCATTCCCA-GTCTAAG--ATTGATCGGAC-GAGGGTTGTGGCAGCAGGA
* * *
22974634 -CTGGCAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGTGCATTATGCCTCTTCAG-CCGT
61 TC-GACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCAGTCCGT
* * * *
22974697 CTCAGTGCCCGTACG-CTCGTTTCGTGGGTTGACT
125 -TCAGCGCCCGCAAGTCT-GTTTCATGGGTTGACT
* **
22974731 TATGCATATGGGGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGTGGTGGCAGGATCG
1 TAAGCATATGGGGTTCATTCCCAGTCTAAGATT-GATCGGA-CGAGGGTTGTGGCAGCAGGATCG
** * *
22974796 ACAGCACGCAG-GGGGGACCAAGTCGATCCCCGACTTG
64 ACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTG
22974833 CACATTCTAC
Statistics
Matches: 208, Mismatches: 37, Indels: 31
0.75 0.13 0.11
Matches are distributed among these distances:
156 7 0.03
157 49 0.24
158 28 0.13
159 116 0.56
160 8 0.04
ACGTcount: A:0.18, C:0.26, G:0.33, T:0.23
Consensus pattern (157 bp):
TAAGCATATGGGGTTCATTCCCAGTCTAAGATTGATCGGACGAGGGTTGTGGCAGCAGGATCGAC
AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCAGTCCGTTCAGCG
CCCGCAAGTCTGTTTCATGGGTTGACT
Found at i:22974922 original size:26 final size:26
Alignment explanation
Indices: 22974892--22974944 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22974882 GTTGCTTTAG
22974892 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
22974918 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22974944 G
1 G
22974945 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22975651 original size:26 final size:26
Alignment explanation
Indices: 22975615--22975666 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
22975605 TTGACTTAGC
22975615 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
22975641 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
22975667 ATCAAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:22976521 original size:26 final size:26
Alignment explanation
Indices: 22976491--22976543 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22976481 GTAGACTTAG
*
22976491 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATACCCAATCTAA
** *
22976517 GCATATGGAGTTCATACCCACTCTAA
1 GCATACAGAGTTCATACCCAATCTAA
22976543 G
1 G
22976544 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAATCTAA
Found at i:22976877 original size:159 final size:157
Alignment explanation
Indices: 22976514--22977017 Score: 377
Period size: 159 Copynumber: 3.2 Consensus size: 157
22976504 ATCCCCAATC
* * * * * *
22976514 TAAGCATATGGAGTTCATACCCACTCTAAGATCAGACCGGACCGAGGGTTGTGGCTGCAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGAT-TGACCAGA-CGAGGGTTGTGGCAGCAGGATCG
* * * * *
22976579 ATAGCACGC--AGGGGGACCGGGCCGATCCCCGGCTTGTGGATTCTGCCTCTCCGGTCGGTTGAG
64 ACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCAGTCCGTTGAG
* *
22976642 CGCCCGCAAGTCTGTTTCATGGGTTGGCT
129 CGCCCGCAAGTCTATTTCATGGGTTGACT
* ** * *
22976671 TAAGCATAGGGAGTTCATT-CCATGTCTAAGCCCCTG-TCAGACTGAGGGTTGTGGCAGCGGGA-
1 TAAGCATACGGAGTTCATTCCCA-GTCTAAG--ATTGACCAGAC-GAGGGTTGTGGCAGCAGGAT
* * *
22976733 CTGGCAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGTGCATTATGCCTCTTCAG-CCGTC
62 C-GACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCAGTCCGT-
* * * *
22976797 TCG-GTGCTCGCACG-CTCATTTCGTGGGTTGACT
125 T-GAGCGCCCGCAAGTCT-ATTTCATGGGTTGACT
* **
22976830 TATGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGTGGTGGCAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATT-GACCAGA-CGAGGGTTGTGGCAGCAGGATCG
** * * ** * * * * *
22976895 ACAGCACGCAG-GGGGGACCAAGTCGATCCCCGACTTGCACATTCTACCTCT-CTGGCCTGCTGA
64 ACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCAGTCC-GTTGA
* * *
22976958 GCACCCGCACG-CTCGTTTCATGGGTTG-CTT
128 GCGCCCGCAAGTCT-ATTTCATGGGTTGAC-T
* *
22976988 TAGGCATACAGAGTTCATT-CCATGTCTAAG
1 TAAGCATACGGAGTTCATTCCCA-GTCTAAG
22977018 CATACGGAGT
Statistics
Matches: 276, Mismatches: 51, Indels: 39
0.75 0.14 0.11
Matches are distributed among these distances:
156 5 0.02
157 59 0.21
158 88 0.32
159 118 0.43
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATTGACCAGACGAGGGTTGTGGCAGCAGGATCGAC
AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCAGTCCGTTGAGCG
CCCGCAAGTCTATTTCATGGGTTGACT
Found at i:22977021 original size:26 final size:26
Alignment explanation
Indices: 22976991--22977043 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22976981 GTTGCTTTAG
22976991 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
22977017 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22977043 G
1 G
22977044 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22977662 original size:26 final size:25
Alignment explanation
Indices: 22977629--22977680 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
22977619 GTTGGCTTAG
22977629 GCATAGGAGTTCATT-CCATGTCTAA
1 GCATAGGAGTTCATTCCCA-GTCTAA
22977654 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCAT-AGGAGTTCATTCCCAGTCTAA
22977680 G
1 G
22977681 ATCGAAGCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 4 0.16
26 18 0.72
27 3 0.12
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATAGGAGTTCATTCCCAGTCTAA
Found at i:22977854 original size:26 final size:26
Alignment explanation
Indices: 22977824--22977876 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22977814 GTTGACTTAG
*
22977824 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22977850 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22977876 G
1 G
22977877 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22978150 original size:158 final size:158
Alignment explanation
Indices: 22977850--22978350 Score: 476
Period size: 158 Copynumber: 3.2 Consensus size: 158
22977840 CCCAGTCTAA
* * * * *
22977850 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACC-AGACCAAGGGTTGCGGCAGTAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCGA-ACCAAGGGTTGTGGCAGCAAGATCGA
** * * * * * * **
22977913 CAGCACGTAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTACCTCTCCCACTGGCTGAGTG
64 CAGCACGTAGGGGGGACCGGGCCAATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTCAGCA
* * * *
22977978 CCCGCAC-TCCCGTTTCTTGGATTGGCTTAG
129 CCCTCACGT-TCGTTTCATGGGTTGGCTTAG
* * ** *
22978008 GCATAGGGAGTTCATTCCATGTCTAA-ACCCCAG-CCGAACCGAGGGTTGTGGCAGCGGGATCGG
1 GCATACGGAGTTCATTCCATGTCTAAGA--CCAGACCGAACCAAGGGTTGTGGCAGCAAGATCGA
* * * ***
22978071 TAGCACGTAGAGGGGGATCGGGCCAATCCTCGGCTTACGCATTCTGCCTCTCCGGTTGGCTCAGC
64 CAGCACGTAG-GGGGGACCGGGCCAATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTCAGC
* * * **
22978136 ACCGT-ACGTTCGTTTCGTGGGTTGACTTCT
128 ACCCTCACGTTCGTTTCATGGGTTGGCTTAG
* * * *
22978166 GCATACGAAGTTCATTCCCA-GTCGAAGATCAGACCGGACCAAGGGTTGTGGCAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCGAACCAAGGGTTGTGGCAGCAAGATCGAC
* ** * *
22978230 AGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGC
65 AGCACGTAGGGGGGACCGGGCCAATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTCAGCAC
* *
22978295 CCTCATGTTCATTTCATGGGTTGGCTTAG
130 CCTCACGTTCGTTTCATGGGTTGGCTTAG
22978324 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
22978351 CATACGGAGT
Statistics
Matches: 275, Mismatches: 57, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
157 58 0.21
158 164 0.60
159 53 0.19
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCGAACCAAGGGTTGTGGCAGCAAGATCGACA
GCACGTAGGGGGGACCGGGCCAATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTCAGCACC
CTCACGTTCGTTTCATGGGTTGGCTTAG
Found at i:22979263 original size:158 final size:157
Alignment explanation
Indices: 22978972--22979537 Score: 560
Period size: 158 Copynumber: 3.6 Consensus size: 157
22978962 ACCACCCGTT
* * * * * * * *
22978972 CGATCCCCGACTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCA-TTCACACGCTCGTTTCATGGG
1 CGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCACCT-GCACGCTCGTTTCATGGG
* * *
22979036 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGACAGCA
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GAACTGAGGGTTGCGGCAGCA
22979101 GGATCGGCAGCACGTAAGGGGGACCGGGC
129 GGATCGGCAGCACGTAAGGGGGACCGGGC
* * * *
22979130 CGATCCCAGGCTTGTGTATTCTGCCTCTCCGATCGACTGAGCACCTGCACGCCCGTTTCATGGGT
1 CGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCACCTGCACGCTCGTTTCATGGGT
* * ** * * * *
22979195 TGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCGAACCGAGGGTTGTGGCAGCG
66 TGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACGAACTGAGGGTTGCGGCAGCA
* * * * *
22979259 GGATCGGTAGCACGCAGAAGAGGACCGAGC
129 GGATCGGCAGCACGTA-AGGGGGACCGGGC
* * * ** * * **
22979289 CGATCCCTGACTTGCGCATTATGCCTCTTTGGTCGGCTCAGCACCTGCACGCTCGTTTTGTGGGT
1 CGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCACCTGCACGCTCGTTTCATGGGT
* * * * * *
22979354 TGACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATCGGGCCAGATTGAGGGTTGCAGCAGCAG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGA-ACTGAGGGTTGCGGCAGCAG
* * * * *
22979419 GATCGACAGCACCTAGGGGGGATCGGGT
130 GATCGGCAGCACGTAAGGGGGACCGGGC
* * * * *
22979447 CGATCCTTGGCTTGTGCATTCTGCCTCTCCGGTCGATTGAGCGCCCGCACACTCGTTTCATGGGT
1 CGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCACCTGCACGCTCGTTTCATGGGT
* **
22979512 TGGCTTACTCATACGGAGTTCATTCC
66 TGACTTAGGCATACGGAGTTCATTCC
22979538 ATATCTAATC
Statistics
Matches: 322, Mismatches: 80, Indels: 12
0.78 0.19 0.03
Matches are distributed among these distances:
157 3 0.01
158 194 0.60
159 122 0.38
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (157 bp):
CGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCACCTGCACGCTCGTTTCATGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAACTGAGGGTTGCGGCAGCAGG
ATCGGCAGCACGTAAGGGGGACCGGGC
Found at i:22979550 original size:26 final size:26
Alignment explanation
Indices: 22979520--22979571 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22979510 GTTGGCTTAC
*
22979520 TCATACGGAGTTCATT-CCATATCTAA
1 TCATACAGAGTTCATTCCCA-ATCTAA
22979546 TCATACAGAGTTCATTCCCAATCTAA
1 TCATACAGAGTTCATTCCCAATCTAA
22979572 GATCAGACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.25, G:0.10, T:0.33
Consensus pattern (26 bp):
TCATACAGAGTTCATTCCCAATCTAA
Found at i:22979678 original size:184 final size:181
Alignment explanation
Indices: 22979369--22979914 Score: 567
Period size: 184 Copynumber: 3.0 Consensus size: 181
22979359 TAGGCATAAG
* * * *
22979369 GAGTTCATTCCCAGTCTAAGATCGGGCCAGATTGAGGGTTGCAGCAGCAGGATCGACAGCACCTA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGTAGCAGGATCGACAGCACC-A
* * *
22979434 GGGGGGA-TCGGGTCGATCCTTGGCTTGTGCATTCTGCCTCTCCGGTCGATTGAGCGCCCGCACA
65 GGGGGGACT-GGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACA
* ** *
22979498 CTCGTTTCATGGGTTGGCTTACTCATACGGAGTTCATTCCATATCTAATCATAC
129 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCA-ATCTAAGCATAC
* ** * * * *
22979552 AGAGTTCATTCCCAATCTAAGATCAGACTGGATCAAGAGTTGCGGTAGCAAGATCGACAGCACGC
1 -GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGTAGCAGGATCGACAGCAC-C
* * * *
22979617 AGGGGGGACTGAGCCGATCCCCGGCTTATGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACG
64 AGGGGGGACTGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACA
** * * * * *
22979682 CTCGTTTTGTGGGTTGACTTGGGCATACAGAGTTCATCCCCAGTCTAAGCATGC
129 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-TCCAATCTAAGCATAC
* * *
22979736 GAAGTTCATTCCCAGTCTAACATCAGACCAGATCGAGGGTTGCAGTAGCAGGAT-TAGCAGCATA
1 G-AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGTAGCAGGATCGA-CAGCA-C
* * * * * * * * * * *
22979800 CAGTGAGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCAGTTGGCTCAGTGCCCGAAC
63 CAGGGGGGACTGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCAC
* *
22979865 ACT-GATTTCATGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
128 ACTCG-TTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCAATCTAAG
22979915 ATCAGACCAG
Statistics
Matches: 294, Mismatches: 60, Indels: 16
0.79 0.16 0.04
Matches are distributed among these distances:
183 3 0.01
184 286 0.97
185 5 0.02
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.25
Consensus pattern (181 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGTAGCAGGATCGACAGCACCAG
GGGGGACTGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACACT
CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAATCTAAGCATAC
Found at i:22980074 original size:26 final size:26
Alignment explanation
Indices: 22980045--22980097 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22980035 GTTGGCTTAG
22980045 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
*
22980071 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
22980097 G
1 G
22980098 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATGTCTAA
Found at i:22980276 original size:26 final size:26
Alignment explanation
Indices: 22980240--22980294 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
22980230 GTTGACCTAG
* *
22980240 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
22980266 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
22980292 GCA
1 GCA
22980295 GCACGCAGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:22980577 original size:26 final size:26
Alignment explanation
Indices: 22980527--22980579 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22980517 TTTGGCTTAG
*
22980527 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
22980553 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
22980579 G
1 G
22980580 ATTTTTTGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:22981834 original size:25 final size:26
Alignment explanation
Indices: 22981783--22981834 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22981773 ATGGACTTAG
* *
22981783 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
*
22981809 GCATACGAAGTTCAT-TCCAGCCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
22981834 G
1 G
22981835 TAACACGCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGCCTAA
Found at i:22982324 original size:26 final size:26
Alignment explanation
Indices: 22982288--22982365 Score: 138
Period size: 26 Copynumber: 3.0 Consensus size: 26
22982278 TTAACTTAGA
* *
22982288 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
22982314 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
22982340 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
22982366 ATCTTACTGG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:22983521 original size:158 final size:158
Alignment explanation
Indices: 22983096--22983549 Score: 484
Period size: 159 Copynumber: 2.9 Consensus size: 158
22983086 CACCCATTGC
* ** * * *
22983096 GGCAGTAGGATCGGTAGCACGGAGGGGGGACCGGGCCGATCCCCTGCTTGCGCATTCTACCTCTC
1 GGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTC
* * *
22983161 CGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
66 CGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* *
22983226 TCTAAGCCCCAGCCAGATCGAGAGATGT
131 TCTAAGCCCCAGCCAGACCAAGAGATGT
* * * * * * * * *
22983254 GGTAGCGGGATCGACAGCACGCAGAAGGGGACCAGGTCGATCCCCGGTTTGTGCATTATGCCTCT
1 GGCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCT
* * * * * * * *
22983319 TCGACTGGCTCAGCGCCCTCACGCTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATT-CAT
65 CCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
**** *
22983383 AGTCTAAG-ATTGGACCAGACCAA-AGGTTGT
130 -GTCTAAGCCCCAG-CCAGACCAAGA-GATGT
*
22983413 GGCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCAGCTTG-GCAATTCTGCCTCT
1 GGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGC-ATTCTGCCTCT
* * * * *
22983477 CCGGCCAGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCAAACGGAGTTCAATCCAC
65 CCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
22983542 GTCTAAGC
130 GTCTAAGC
22983550 ATACGGAGTT
Statistics
Matches: 236, Mismatches: 53, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
157 2 0.01
158 110 0.47
159 124 0.53
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTC
CGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
TCTAAGCCCCAGCCAGACCAAGAGATGT
Found at i:22983694 original size:184 final size:184
Alignment explanation
Indices: 22983364--22983764 Score: 522
Period size: 184 Copynumber: 2.2 Consensus size: 184
22983354 GTTGACTTAG
* ** * *
22983364 GCATATGGAGTTCATTCATAGTCTAAGATTGGACCAGACCAAAGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAAGGTTGTGGCAACAGGATCGACA
* *
22983429 GCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGGCAATTCTGCCTCTCCGGCCAGCTGAGCGCC
66 GCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGGCAATTCTACCTCTCCGACCAGCTGAGCGCC
22983494 CGCACGCTCATTTCATGGGTTGGCTTAGGCAAACGGAGTTCAATCCACGTCTAA
131 CGCACGCTCATTTCATGGGTTGGCTTAGGCAAACGGAGTTCAATCCACGTCTAA
* * *
22983548 GCATACGGAGTTCATTCCCAGTCTAAGATCGGGCCAGACCGACGGTTGTGGCAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAAGGTTGTGGCAACAGGATCGACA
* * * * * * * *
22983613 GTACGTAGGGGGGATCGGGTCGGTCCTC-GACTT-GCGTATTCTACCTCTCCGA-CTGACTGAGT
66 GCACGTAGGGGGGACCGGGCCGATCCCCAG-CTTGGC-AATTCTACCTCTCCGACCAG-CTGAGC
* ** * * *
22983675 GCCTGCACTG-TTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
128 GCCCGCAC-GCTCATTTCATGGGTTGGCTTAGGCAAACGGAGTTCAATCCACGTCTAA
22983732 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA
22983765 TCGGACCGAG
Statistics
Matches: 188, Mismatches: 25, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
183 5 0.03
184 182 0.97
185 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAAGGTTGTGGCAACAGGATCGACA
GCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGGCAATTCTACCTCTCCGACCAGCTGAGCGCC
CGCACGCTCATTTCATGGGTTGGCTTAGGCAAACGGAGTTCAATCCACGTCTAA
Found at i:22983736 original size:26 final size:26
Alignment explanation
Indices: 22983706--22983758 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22983696 GTTGGCTTAG
22983706 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22983732 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22983758 G
1 G
22983759 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22984121 original size:26 final size:26
Alignment explanation
Indices: 22984085--22984137 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22984075 GTTGACTTAG
22984085 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22984111 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22984137 G
1 G
22984138 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22984722 original size:11 final size:11
Alignment explanation
Indices: 22984706--22984730 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22984696 CCCGAGGCAC
22984706 CATCGTCGGAG
1 CATCGTCGGAG
22984717 CATCGTCGGAG
1 CATCGTCGGAG
22984728 CAT
1 CAT
22984731 TACCGGAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.20
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:22985345 original size:26 final size:26
Alignment explanation
Indices: 22985316--22985368 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22985306 GTTGACTTAG
22985316 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
22985342 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
22985368 G
1 G
22985369 ATCTGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:22986619 original size:158 final size:157
Alignment explanation
Indices: 22986162--22986641 Score: 453
Period size: 159 Copynumber: 3.0 Consensus size: 157
22986152 TCATCCCCAC
* * ** *
22986162 TCTAAGACGGACCGGACTGAGGGTTGCCGAAAGTAGGATCGACAGCACGCA-GGGGGACCAACCC
1 TCTAAGACGGACCGGACCGAGGGTTG-CGGAAGTAGGATCGACAGCACGCAGGGGGGACTGAGCC
* * * * * * * * *
22986226 AATACCCGGCTTGCGTATTCTGCCTCTCCGACCGGCTAAGCACCTGCATGCCCATTTTGTGTGTT
65 GATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCCCGCACGCTCATTTTGTGGGTT
*
22986291 GGCTTAGGCATAGGGAGTTCATTCCATG
130 GGCTTAGGCATACGGAGTTCATTCCATG
* ** * * * * ** * * * *
22986319 TCTAAGCCCCAGCTGGACCGGGGGTTGTGGCAGCGGGACCGACAACACGTAGAGAGGGA-TCGAG
1 TCTAAGACGGA-CCGGACCGAGGGTTGCGGAAGTAGGATCGACAGCACGCAG-GGGGGACT-GAG
* * * * * * * * * *
22986383 TCGATCCTCGACTTACGCATTATGCCTCTTCGGCCGGTTCAGTGCGCGCACGCTCATTTTGTGGG
63 CCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCCCGCACGCTCATTTTGTGGG
* * *
22986448 TTGACTTATGCATACGGAATTCATTCCCA-G
128 TTGGCTTAGGCATACGGAGTTCATT-CCATG
* *
22986478 TCTAAGATCGGACCGGACCGAGGGTTGCGGTAGTAGGATCGACAGCACGCAGGGGGGACTGGGCC
1 TCTAAGA-CGGACCGGACCGAGGGTTGCGGAAGTAGGATCGACAGCACGCAGGGGGGACTGAGCC
* * * * *
22986543 GATCCCCAACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
65 GATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCCCGCACGCTCATTTTGTGGGTT
22986608 GGCTTAGGCATACGGAGTTCATTCCATG
130 GGCTTAGGCATACGGAGTTCATTCCATG
22986636 TCTAAG
1 TCTAAG
22986642 CATACAGAGT
Statistics
Matches: 243, Mismatches: 72, Indels: 15
0.74 0.22 0.05
Matches are distributed among these distances:
157 27 0.11
158 99 0.41
159 112 0.46
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
TCTAAGACGGACCGGACCGAGGGTTGCGGAAGTAGGATCGACAGCACGCAGGGGGGACTGAGCCG
ATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCCCGCACGCTCATTTTGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATG
Found at i:22986651 original size:26 final size:26
Alignment explanation
Indices: 22986615--22986667 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22986605 GTTGGCTTAG
*
22986615 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
22986641 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
22986667 G
1 G
22986668 ATCAGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:22987813 original size:159 final size:161
Alignment explanation
Indices: 22987650--22987958 Score: 370
Period size: 171 Copynumber: 1.9 Consensus size: 161
22987640 CCGTTTCGTT
* * * * * *
22987650 GGTTGGCTTAGGCATAGGGAGTTCATTCCACATCTAATCGCTAGCCAGACCGA-TGGT-TCTGGC
1 GGTTGGCTTAGGCATACGAAGTTCATTCCACATCTAAGCCCCAGCCAGACCGAGTGGTGACTGGC
* * *
22987713 AGTGGGATCGACAGCACGCAGAGGGGGACTGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCG
66 AGTGGGATCGACAGCACGCAGAGGGGGACCGGATCGATCCTCGGCTTGCACATTATGCCTCTCCG
* *
22987778 GTCTGCTGAGCGATCGTACGTTTATTTTGTG
131 ATCGGCTGAGCGATCGTACGTTTATTTTGTG
** *
22987809 GGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAG
1 GGTTGGCTTAGGCATACGAAGTTCATTCCACATCTAAGCCCCAGCCAGACCGA-----GTGGT--
* *
22987874 CAGGACTGGCAGTGGGATCGACTGCACGCAGAGGGGGACCGGATTGATCCTCGGCTTGCACATTA
59 ---GACTGGCAGTGGGATCGACAGCACGCAGAGGGGGACCGGATCGATCCTCGGCTTGCACATTA
22987939 TGCCTCTCCGATCGGCTGAG
121 TGCCTCTCCGATCGGCTGAG
22987959 AGCCCACTCG
Statistics
Matches: 122, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
159 45 0.37
165 4 0.03
171 73 0.60
ACGTcount: A:0.19, C:0.24, G:0.32, T:0.25
Consensus pattern (161 bp):
GGTTGGCTTAGGCATACGAAGTTCATTCCACATCTAAGCCCCAGCCAGACCGAGTGGTGACTGGC
AGTGGGATCGACAGCACGCAGAGGGGGACCGGATCGATCCTCGGCTTGCACATTATGCCTCTCCG
ATCGGCTGAGCGATCGTACGTTTATTTTGTG
Found at i:22987993 original size:171 final size:171
Alignment explanation
Indices: 22987708--22988018 Score: 437
Period size: 171 Copynumber: 1.8 Consensus size: 171
22987698 ACCGATGGTT
* * *
22987708 CTGGCAGTGGGATCGACAGCACGCAGAGGGGGACTGGGTCGATCCTCGGCTTGCGCATTATGCCT
1 CTGGCAGTGGGATCGACAGCACGCAGAGGGGGACCGGATCGATCCTCGGCTTGCACATTATGCCT
* * * * * * * * * *
22987773 CTCCGGTCTGCTGAGCGATCGTACGTTTATTTTGTGGGTTGGCTTAGGCATACGAAGTTCAT-TC
66 CTCCGATCGGCTGAGAGACCCTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCC
22987837 CATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAGCAGGA
131 CA-GTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAGCAGGA
* *
22987879 CTGGCAGTGGGATCGACTGCACGCAGAGGGGGACCGGATTGATCCTCGGCTTGCACATTATGCCT
1 CTGGCAGTGGGATCGACAGCACGCAGAGGGGGACCGGATCGATCCTCGGCTTGCACATTATGCCT
* *
22987944 CTCCGATCGGCTGAGAGCCCACT-CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCC
66 CTCCGATCGGCTGAGAGACC-CTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCC
22988008 CCAGTCTAAGC
130 CCAGTCTAAGC
22988019 ATATGGAGGT
Statistics
Matches: 121, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
171 117 0.97
172 4 0.03
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (171 bp):
CTGGCAGTGGGATCGACAGCACGCAGAGGGGGACCGGATCGATCCTCGGCTTGCACATTATGCCT
CTCCGATCGGCTGAGAGACCCTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCC
CAGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAGCAGGA
Found at i:22988031 original size:26 final size:26
Alignment explanation
Indices: 22987991--22988043 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22987981 GTTGACTTAG
*
22987991 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGGTCATCCCCAGTCTAA
* *
22988017 GCATATGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATCCCCAGTCTAA
22988043 G
1 G
22988044 ATTAGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGGTCATCCCCAGTCTAA
Found at i:22988319 original size:159 final size:158
Alignment explanation
Indices: 22988052--22988360 Score: 359
Period size: 159 Copynumber: 1.9 Consensus size: 158
22988042 AGATTAGATT
* * * *
22988052 GGACCGAGGGTTGCGGCAACAGGATCGGCAGCACGCAAGGGGGACCGAGCCAATCCCCGGCTTGC
1 GGACCGAGGGTTGCGGCAACAGGACCAGCAGCACACAAGGGGGACCGAGCCAATCCCCGACTTGC
* **** * * * ** *
22988117 ACATTCTGCCTCTTCGGTTGGCTGAGCGCCCGTACGCCCGTTTCGTGGGCTGGCTTAGGCATAGG
66 ACATTATGCCTCTTCGACCAGCTCAACGCCCGGACGCCCGTTTCGTGGGCTAACTTAGGCATACG
22988182 GAGTTCATTCC-ATGTCTAAGCCCCAACC
131 GAGTTCATTCCTA-GTCTAAGCCCCAACC
* * * * * * *
22988210 GGACCGAGGGTTGTGGCAGCGGGACCAGTAGCACACAGAGGGGGACCGGGCCGATCCTCGACTTG
1 GGACCGAGGGTTGCGGCAACAGGACCAGCAGCACACA-AGGGGGACCGAGCCAATCCCCGACTTG
* * * *
22988275 CGCATTATGCCTCTTCGACCAGCTCAACGCCCGGACGCTCGTTTCGTGGGTTAACTTATGCATAC
65 CACATTATGCCTCTTCGACCAGCTCAACGCCCGGACGCCCGTTTCGTGGGCTAACTTAGGCATAC
22988340 GGAGTTCATTCCTAGTCTAAG
130 GGAGTTCATTCCTAGTCTAAG
22988361 ATCAGACCAG
Statistics
Matches: 123, Mismatches: 26, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
158 30 0.24
159 92 0.75
160 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (158 bp):
GGACCGAGGGTTGCGGCAACAGGACCAGCAGCACACAAGGGGGACCGAGCCAATCCCCGACTTGC
ACATTATGCCTCTTCGACCAGCTCAACGCCCGGACGCCCGTTTCGTGGGCTAACTTAGGCATACG
GAGTTCATTCCTAGTCTAAGCCCCAACC
Found at i:22989247 original size:26 final size:26
Alignment explanation
Indices: 22989217--22989269 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22989207 GTTGACTTAG
22989217 GCATACAG-AGTTCATCCCCAGTCTAA
1 GCATA-AGAAGTTCATCCCCAGTCTAA
* *
22989243 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATCCCCAGTCTAA
22989269 G
1 G
22989270 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCCAGTCTAA
Found at i:22989626 original size:159 final size:159
Alignment explanation
Indices: 22989251--22989662 Score: 408
Period size: 159 Copynumber: 2.6 Consensus size: 159
22989241 AAGCATATGA
* * *
22989251 AGTTCATTCCCAGTCTAAGATCAGACCAGATCGACGGTTGCGGTAGCAGGATCG-CAGCACGC--
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
* * * * * * * * *
22989313 AAGAGGGACCGAGCTGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGTTGAGTGCCCGCACG
66 AAG-GGGACCGGGCTGATCCTCGGCTTGCGCATTATGCCTCTCCAACCGGCTCAGCGCCCACACG
* * **
22989378 CCCGTTTCGTGGGTTGGCTTAGGCATAGGG
130 CCCATTTCGTGGGTTGACTTAGGCATACAG
** ** * * *
22989408 AGTTCATT-CCATGTCTAAGCCCCAG-CTGGACTGAGGGTTGTGGCAGCAGGA-CCAGCAGCACG
1 AGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACG
* * *
22989470 CAGAAGGGGATCGGGCTGATCCTCGGCTTGCGCATTATGCCTCTTCAACTGGCTCAGCGCCCACA
63 CAGAAGGGGACCGGGCTGATCCTCGGCTTGCGCATTATGCCTCTCCAACCGGCTCAGCGCCCACA
* *
22989535 CGCTCATTTCGTGGGTTGACTTATGCATACAG
128 CGCCCATTTCGTGGGTTGACTTAGGCATACAG
** * * * *
22989567 AGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGGCAACAAGATCGACAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
**
22989632 --GGGGACCGGGCCAATCCTCGGCTTGCGCATT
66 AAGGGGACCGGGCTGATCCTCGGCTTGCGCATT
22989663 CTGTTTCTAT
Statistics
Matches: 202, Mismatches: 44, Indels: 18
0.77 0.17 0.07
Matches are distributed among these distances:
156 4 0.02
157 62 0.31
158 12 0.06
159 116 0.57
160 8 0.04
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (159 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
AAGGGGACCGGGCTGATCCTCGGCTTGCGCATTATGCCTCTCCAACCGGCTCAGCGCCCACACGC
CCATTTCGTGGGTTGACTTAGGCATACAG
Found at i:22990265 original size:26 final size:26
Alignment explanation
Indices: 22990236--22990288 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22990226 GTTGACTTAG
*
22990236 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22990262 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22990288 G
1 G
22990289 ATCAGGCCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22990630 original size:26 final size:26
Alignment explanation
Indices: 22990594--22990643 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
22990584 TTGACTTGGG
*
22990594 CATACAGAGTTTATCCCCAGTCTAAT
1 CATACAGAGTTAATCCCCAGTCTAAT
* *
22990620 CATACGGAGTTAATTCCCAGTCTA
1 CATACAGAGTTAATCCCCAGTCTA
22990644 TGATTAGACC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (26 bp):
CATACAGAGTTAATCCCCAGTCTAAT
Found at i:22991122 original size:26 final size:26
Alignment explanation
Indices: 22991092--22991144 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22991082 GTTGGCTTAG
22991092 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
22991118 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22991144 G
1 G
22991145 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22991835 original size:26 final size:26
Alignment explanation
Indices: 22991799--22991851 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22991789 GTTGACATAG
*
22991799 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
22991825 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
22991851 G
1 G
22991852 ATCAGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:22992412 original size:368 final size:350
Alignment explanation
Indices: 22991470--22992431 Score: 877
Period size: 368 Copynumber: 2.6 Consensus size: 350
22991460 GTTGACTTAG
* * * * * *
22991470 GCATACGCAGTTCATTCCCAATCTAAGATCGGATCGAATTGAGGGTTGCGGCAGCAAGATCGATA
1 GCATACGGAGTTCATT-CCAATCTAAGATCGGATAGGA-TGAGGGTTGCGACAGCAGGATCGGTA
* * * * * *
22991535 ACAAGCAAAGGGGGACTGGGTTGGTCCCTGGCTTACGCATTTTGCCTCTCCGACCGGCTGAGCGC
64 GCAAGC-AGGGGGGACCGGGTCGATCCC-GGCTTACGCATTCTGCCTCTCCGA-CGGCTGAGCGC
* * * *
22991600 CGTACGCTCGTTTCGTGGGTTGGCTTAGGCATATGAAGTTCATTCCCTGTCTAAGCCCCAGCCGG
126 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * * * *
22991665 ATCGGAGGTTGTGGCAGCAGGACCGGCAGCGGGATCAACAGCACAGAGAAGGGGATCGAGCTGAT
191 ATCGGGGGTTGTGGCAGCAAGACCGACAGCAGGATCAACAGCACAGAGAAGGGGATCGAGCTAAT
* * * * *
22991730 CCTTGGCTTACGCATTATGCCTCTCCTGCCGGTTGAGCACCCTCACGCTCGTTTCGTGAGTTGAC
256 CCTCGGCTTACGCATTATGCCTCTCCGGCCGGTTGAGAACCCACACGCTCATTTCGTGAGTTGAC
***
22991795 ATAGGCATATGGAGTTCATCCCCAGTCTAA
321 ATAGGCATACAAAGTTCATCCCCAGTCTAA
* *
22991825 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATAGGATCGAGGGTTACAGTAGCAGGACCAGTA
1 GCATACGGAGTTCATT-CCAATCTAAGATCGGATAGGAT-GAGGG-T----T-GC--GA-C---A
* * * * * *
22991890 GCAGGATCGGCAGCAAGTAGGAAGGGATCAGG-CTGATCCCCGACTTACGCATTCTGCCTCTCCG
52 GCAGGATCGGTAGCAAGCAGG-GGGGACCGGGTC-GAT-CCCGGCTTACGCATTCTGCCTCTCCG
* * * * * *
22991954 ACTGGCTGAGTGCCCGCACACTCATTTCGTGGGTTGACCTAGGCGTACGGAGTTCATTCCATGTC
114 AC-GGCTGAGCG-CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* * * ** * * * * *
22992019 CAAGCCCCAGTCGGACCAAGGGTTGTGGTAGCAAGACTGACAGCAGGATCGACAGCAC-GCCGAG
177 TAAGCCCCAGCCGGATCGGGGGTTGTGGCAGCAAGACCGACAGCAGGATCAACAGCACAG-AGAA
* * *
22992083 GGGGATCGGGCTAATCCTCGGCTTACGCATTATGCTTCTTCGGCCGGCCTCTCTTGTCGACTGAA
241 GGGGATCGAGCTAATCCTCGGCTTACGCATTATGCCTCTCCGGCCGG-------T-T-GA--GAA
* * * * *
22992148 TGCCCACACGCTTATTTTGTGGGTTGACTTGGGCATACAAAGTTCATCCCCAGTCTAA
295 --CCCACACGCTCATTTCGTGAGTTGACATAGGCATACAAAGTTCATCCCCAGTCTAA
* *
22992206 GCATACGGAGTTCATTCTCGATCTAAGATTGGACT-GGACTGAGGGTTGCGACAGCAGGATCGGT
1 GCATACGGAGTTCATTC-CAATCTAAGATCGGA-TAGGA-TGAGGGTTGCGACAGCAGGATCGGT
*
22992270 AGCACGCAGGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGC
63 AGCAAGCAGGGGGGACCGGGTCGATCC-CGGCTTACGCATTCTGCCTCTCCGA-CGGCTGAGCGC
* * * *
22992335 TCGCACGCCCGTTTCATGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
126 -CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* *
22992400 GATCGGGGGTTGTGGCAGCGATACCGACAGCA
190 GATCGGGGGTTGTGGCAGCAAGACCGACAGCA
22992432 CGTAGAGGGG
Statistics
Matches: 477, Mismatches: 91, Indels: 65
0.75 0.14 0.10
Matches are distributed among these distances:
354 1 0.00
355 38 0.08
356 1 0.00
360 1 0.00
361 2 0.00
363 1 0.00
364 1 0.00
366 3 0.01
367 56 0.12
368 255 0.53
369 21 0.04
372 1 0.00
373 2 0.00
375 3 0.01
376 2 0.00
377 2 0.00
379 2 0.00
380 2 0.00
381 81 0.17
382 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (350 bp):
GCATACGGAGTTCATTCCAATCTAAGATCGGATAGGATGAGGGTTGCGACAGCAGGATCGGTAGC
AAGCAGGGGGGACCGGGTCGATCCCGGCTTACGCATTCTGCCTCTCCGACGGCTGAGCGCCGCAC
GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGG
GGGTTGTGGCAGCAAGACCGACAGCAGGATCAACAGCACAGAGAAGGGGATCGAGCTAATCCTCG
GCTTACGCATTATGCCTCTCCGGCCGGTTGAGAACCCACACGCTCATTTCGTGAGTTGACATAGG
CATACAAAGTTCATCCCCAGTCTAA
Found at i:22992691 original size:156 final size:155
Alignment explanation
Indices: 22992206--22992705 Score: 476
Period size: 159 Copynumber: 3.2 Consensus size: 155
22992196 CCCAGTCTAA
* *
22992206 GCATACGGAGTTCATT-C-TCGATCTAAGATTGGACTGGA-CTGAGGGTTGCGACAGCAGGATCG
1 GCATACGGAGTTCATTCCAT-G-TCTAAGATCGGAC-GGATC-GAGGGTTGTGACAGCAGGATCG
** * * *
22992268 GTAGCACGCAGGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGC
62 ACAGCACGCAGGGGGGACCGGG-CGATCC-CCGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGC
* * *
22992333 GCTCGCACGCCCGTTTCATGGGTTGGCTTAG
125 GCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * ** * * * *
22992364 ACATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGGGGGTTGTGGCAGC--GATACCGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCGGACGGATCGAGGGTTGTGACAGCAGGAT--CGA
* * * *
22992427 CAGCACGTAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATCCCTCTTCGATCGGCTCAA-
63 CAGCACGCAG-GGGGGACCGGGC-GATCCCC-GCTTGCGCATTCTGCCTCTCCGATCGGCT-AAG
* * * * *
22992491 CGTCTGAACGCTCATTTCGTGGGTTGACTTAG
124 CGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* *
22992523 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGATCGGATCGAGGGTTGTGACAGCAGGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGA-CGGATCGAGGGTTGTGACAGCAGGATCGAC
* * * * *
22992587 AGCACGCAGGGGGG-CCGGGCCAGTCCCCACTTGCGTATTCTGTCTCTCCGGTCGGCTAAGCGCC
64 AGCACGCAGGGGGGACCGGGCGA-TCCCCGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGCGCC
*
22992651 CGCACGCTCATTTTATGGGTTGGCTTAG
128 CGCACGCTCATTTCATGGGTTGGCTTAG
*
22992679 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
22992706 CATATGGAGT
Statistics
Matches: 272, Mismatches: 53, Indels: 36
0.75 0.15 0.10
Matches are distributed among these distances:
155 5 0.02
156 73 0.27
157 11 0.04
158 54 0.20
159 121 0.44
160 5 0.02
161 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACGGATCGAGGGTTGTGACAGCAGGATCGACAG
CACGCAGGGGGGACCGGGCGATCCCCGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGCGCCCGC
ACGCTCATTTCATGGGTTGGCTTAG
Found at i:22993081 original size:159 final size:158
Alignment explanation
Indices: 22992792--22993297 Score: 570
Period size: 159 Copynumber: 3.2 Consensus size: 158
22992782 ACATGCAGGA
* * * * * **
22992792 GGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCCTTTTGCCCGCACGCCCA
1 GGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGTC-AGTGCCCGCACGCCCA
* *
22992857 TTTCGTGGGTCGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
65 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
*
22992922 GTGGCAGTGGGACCGACAGCACGCATAGG
130 GTGGCAGTGGGACAGACAGCACGCATAGG
* * * * *
22992951 GGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTTCAGCCGGATCAGTGCCCGTACCCCCG
1 GGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGG-TCAGTGCCCGCACGCCCA
* *
22993016 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
65 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
* * *
22993081 GTGGCAGCGGGACTGACAGCACGCAGAGG
130 GTGGCAGTGGGACAGACAGCACGCATAGG
* * * * * *
22993110 GGGACTGGGCCGATCCTCGGCTTGTGCATTATGCCTCTTCGGCTGGCTCAGTGCCCGCACGCTCA
1 GGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGG-TCAGTGCCCGCACGCCCA
* * * * ** *
22993175 TTTCGTGGGTTGACTTATGCATACGAAATTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGG
65 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGG
** * * *
22993238 TTACGACAGTAGGATAGACAGCA--CATAGGG
128 TTGTGGCAGTGGGACAGACAGCACGCATA-GG
* *
22993268 GGGACTGAGTCGATCCCCGGCTTGCGCATT
1 GGGACCGAGCCGATCCCCGGCTTGCGCATT
22993298 CTACCTCTCC
Statistics
Matches: 291, Mismatches: 52, Indels: 9
0.83 0.15 0.03
Matches are distributed among these distances:
157 3 0.01
158 31 0.11
159 253 0.87
160 4 0.01
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.23
Consensus pattern (158 bp):
GGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGTCAGTGCCCGCACGCCCAT
TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTG
TGGCAGTGGGACAGACAGCACGCATAGG
Found at i:22993348 original size:158 final size:158
Alignment explanation
Indices: 22993162--22993525 Score: 401
Period size: 158 Copynumber: 2.3 Consensus size: 158
22993152 CTGGCTCAGT
* * * * *
22993162 GCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACGAAATTCATTCCCAGTCTAAGATCAGAC
1 GCCCGAACGCTCGTTTCATGGGTGGACTTAGGCATACGAAATTCATTCCCAGTCTAAGATCAGAC
* * ** * * *
22993227 CGGA-TCGAGGGTTACGACAGTAGGATAGACAGCACATAGGGGGGACTGAG-TCGATCCCCGGCT
66 CGGACT-GAGGGTTACGACAATAGGATAGACAGCACACAGGGCAGACCGGGCT-GATCCCCGACT
22993290 TGCGCATTCTACCTCTCCGATCGGCTTAGC
129 TGCGCATTCTACCTCTCCGATCGGCTTAGC
* * *
22993320 GCTCGAACGCTCGTTTCATTGGTGGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGAC
1 GCCCGAACGCTCGTTTCATGGGTGGACTTAGGCATACGAAATTCATTCCCAGTCTAAGATCAGAC
* * * * * * *
22993385 CGGACTGAGGGTTGCGGCAATAGGATCGATAGCACGCAGGGCAGACCGGGCTGGTCCTCGACTTG
66 CGGACTGAGGGTTACGACAATAGGATAGACAGCACACAGGGCAGACCGGGCTGATCCCCGACTTG
* * * *
22993450 TGCTTTCTACCTCTCTGATCGGTTTAGC
131 CGCATTCTACCTCTCCGATCGGCTTAGC
* * * * *
22993478 GCCCGCACGCTCGTTTCATGGATTGG-TTTAGGCATACGGAGTTCATTC
1 GCCCGAACGCTCGTTTCATGG-GTGGACTTAGGCATACGAAATTCATTC
22993526 ACAATCTATG
Statistics
Matches: 171, Mismatches: 32, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
158 166 0.97
159 5 0.03
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.26
Consensus pattern (158 bp):
GCCCGAACGCTCGTTTCATGGGTGGACTTAGGCATACGAAATTCATTCCCAGTCTAAGATCAGAC
CGGACTGAGGGTTACGACAATAGGATAGACAGCACACAGGGCAGACCGGGCTGATCCCCGACTTG
CGCATTCTACCTCTCCGATCGGCTTAGC
Found at i:22993939 original size:3 final size:3
Alignment explanation
Indices: 22993927--22993955 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
22993917 GTATTCTATG
22993927 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
22993956 GTATATCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:22993972 original size:4 final size:4
Alignment explanation
Indices: 22993963--22994073 Score: 56
Period size: 4 Copynumber: 27.8 Consensus size: 4
22993953 TATGTATATC
** *
22993963 TTTA TTTA TTTA TTTA TTT- TTTA TCAGA TTAGA TTTA TATGTA TTTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TT-TA TTTA T-T-TA -TTTA
* * *
22994011 TTTA TATA GTTA TATA TTTA -TTA -TTA TATTA -TTA -TTA TTT- TATT-
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TTTA T-TTA
22994055 TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTT
22994074 TTTCTTTTCT
Statistics
Matches: 86, Mismatches: 10, Indels: 22
0.73 0.08 0.19
Matches are distributed among these distances:
3 18 0.21
4 52 0.60
5 12 0.14
6 3 0.03
7 1 0.01
ACGTcount: A:0.28, C:0.01, G:0.04, T:0.68
Consensus pattern (4 bp):
TTTA
Found at i:22994039 original size:14 final size:15
Alignment explanation
Indices: 22994009--22994072 Score: 50
Period size: 14 Copynumber: 4.5 Consensus size: 15
22993999 ATATGTATTT
22994009 TATTTATATAGTTATA
1 TATTTAT-TAGTTATA
22994025 TATTTATTA-TTATA
1 TATTTATTAGTTATA
22994039 T-TATTATTA-TT-T-
1 TAT-TTATTAGTTATA
* *
22994051 TATTT-TTATTTATT
1 TATTTATTAGTTATA
22994065 TATTTATT
1 TATTTATT
22994073 TTTTCTTTTC
Statistics
Matches: 42, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
11 3 0.07
12 5 0.12
13 4 0.10
14 19 0.45
15 4 0.10
16 7 0.17
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.69
Consensus pattern (15 bp):
TATTTATTAGTTATA
Found at i:22994042 original size:11 final size:11
Alignment explanation
Indices: 22994023--22994064 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
22994013 TATATAGTTA
22994023 TATATTTATTAT
1 TATA-TTATTAT
22994035 TATATTATTAT
1 TATATTATTAT
* *
22994046 TATTTTATTTT
1 TATATTATTAT
22994057 TAT-TTATT
1 TATATTATT
22994065 TATTTATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
10 5 0.18
11 19 0.68
12 4 0.14
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TATATTATTAT
Done.