Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 226 of 402
Found at i:22994058 original size:48 final size:46
Alignment explanation
Indices: 22993934--22994074 Score: 128
Period size: 48 Copynumber: 3.0 Consensus size: 46
22993924 ATGTATTTTA
* * *
22993934 TTATTATTATTATTATTATTATGTATATCTTTATTTATTTATTTATT
1 TTATTATTA-TATTATTATTATATATATTTTTATTTATATATTTATT
* * * *
22993981 TT-TTATCAGATTA-GATT-TATATGTATTTTATTTATATAGTTATATAT
1 TTATTATTATATTATTATTATATATAT-TTTTATTTATATA-TT-TAT-T
* *
22994028 TTATTATTATATTATTATTAT-TTTATTTTTATTTATTTATTTATT
1 TTATTATTATATTATTATTATATATATTTTTATTTATATATTTATT
22994073 TT
1 TT
22994075 TTCTTTTCTT
Statistics
Matches: 74, Mismatches: 13, Indels: 16
0.72 0.13 0.16
Matches are distributed among these distances:
43 5 0.07
44 14 0.19
45 9 0.12
46 11 0.15
47 7 0.09
48 21 0.28
49 6 0.08
50 1 0.01
ACGTcount: A:0.28, C:0.01, G:0.04, T:0.67
Consensus pattern (46 bp):
TTATTATTATATTATTATTATATATATTTTTATTTATATATTTATT
Found at i:22994478 original size:25 final size:25
Alignment explanation
Indices: 22994443--22994497 Score: 74
Period size: 26 Copynumber: 2.2 Consensus size: 25
22994433 CTGGGAGTGA
*
22994443 GAAAAAAATTTCTAGAAATTTCTGG
1 GAAAAAATTTTCTAGAAATTTCTGG
* *
22994468 CGAAAAAATTTTCTGGAAATTTTTGG
1 -GAAAAAATTTTCTAGAAATTTCTGG
22994494 GAAA
1 GAAA
22994498 TTTCCAGATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 4 0.15
26 22 0.85
ACGTcount: A:0.42, C:0.07, G:0.18, T:0.33
Consensus pattern (25 bp):
GAAAAAATTTTCTAGAAATTTCTGG
Found at i:22994664 original size:20 final size:20
Alignment explanation
Indices: 22994639--22994687 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
22994629 TCCGGCGAAC
*
22994639 TTCCGGCGAGATTTTCCAGA
1 TTCCGGCGAGAATTTCCAGA
22994659 TTCCGGCGAGAATTTCCAGA
1 TTCCGGCGAGAATTTCCAGA
*
22994679 ATCCGGCGA
1 TTCCGGCGA
22994688 AATCCCACCG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (20 bp):
TTCCGGCGAGAATTTCCAGA
Found at i:22994949 original size:14 final size:15
Alignment explanation
Indices: 22994930--22994971 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 15
22994920 CCGAGCCGAG
22994930 CCGAGCCGTTCTTC-
1 CCGAGCCGTTCTTCT
22994944 CCGAGCCG--CTTCT
1 CCGAGCCGTTCTTCT
22994957 CCGAGCCGTT-TTCT
1 CCGAGCCGTTCTTCT
22994971 C
1 C
22994972 TTCCTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 4 0.16
13 8 0.32
14 13 0.52
ACGTcount: A:0.07, C:0.43, G:0.21, T:0.29
Consensus pattern (15 bp):
CCGAGCCGTTCTTCT
Found at i:22994962 original size:13 final size:14
Alignment explanation
Indices: 22994930--22994966 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
22994920 CCGAGCCGAG
22994930 CCGAGCCGTTCTTC
1 CCGAGCCGTTCTTC
22994944 CCGAGCCG--CTTC
1 CCGAGCCGTTCTTC
22994956 TCCGAGCCGTT
1 -CCGAGCCGTT
22994967 TTCTCTTCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
12 4 0.20
13 8 0.40
14 8 0.40
ACGTcount: A:0.08, C:0.43, G:0.24, T:0.24
Consensus pattern (14 bp):
CCGAGCCGTTCTTC
Found at i:22995050 original size:15 final size:15
Alignment explanation
Indices: 22995018--22995060 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
22995008 CCGCTCCAGG
**
22995018 TTTTTTTTTTTT-TT
1 TTTTTTTTTTTTGAA
22995032 TTTTTTTTTTTTGAA
1 TTTTTTTTTTTTGAA
*
22995047 TTTTTTTTATTTGA
1 TTTTTTTTTTTTGA
22995061 CTTTGATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
14 12 0.48
15 13 0.52
ACGTcount: A:0.09, C:0.00, G:0.05, T:0.86
Consensus pattern (15 bp):
TTTTTTTTTTTTGAA
Found at i:22995054 original size:1 final size:1
Alignment explanation
Indices: 22995018--22995043 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
22995008 CCGCTCCAGG
22995018 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
22995044 GAATTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:22995384 original size:152 final size:152
Alignment explanation
Indices: 22995095--22995545 Score: 814
Period size: 152 Copynumber: 3.0 Consensus size: 152
22995085 TTTTTCTTTT
* *
22995095 TTTTTTTTTTTCCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTG
1 TTTTGTTTTTT-CTTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTG
*
22995160 TATACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATA
65 CATACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATA
22995225 ATTTCCAATAATTAATTGGATGA
130 ATTTCCAATAATTAATTGGATGA
22995248 TTTTGTATTTTT-TTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTG
1 TTTTGT-TTTTTCTTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTG
*
22995312 CATACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTTAATTGAGAATA
65 CATACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATA
22995377 ATTTCCAATAATTAATTGGATGA
130 ATTTCCAATAATTAATTGGATGA
*
22995400 TTTTGTTTTTTCTTTAATAAATCCGACGACGGAGCCCCTGCAAGTGAAACAGTAGTTTTTCTTGC
1 TTTTGTTTTTTCTTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGC
22995465 ATACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAA
66 ATACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAA
* *
22995530 TTTCCAACAACTAATT
131 TTTCCAATAATTAATT
22995546 ACTTGGTAAA
Statistics
Matches: 288, Mismatches: 8, Indels: 5
0.96 0.03 0.02
Matches are distributed among these distances:
151 5 0.02
152 273 0.95
153 5 0.02
154 5 0.02
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (152 bp):
TTTTGTTTTTTCTTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGC
ATACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAA
TTTCCAATAATTAATTGGATGA
Found at i:22999258 original size:15 final size:14
Alignment explanation
Indices: 22999231--22999285 Score: 55
Period size: 13 Copynumber: 4.1 Consensus size: 14
22999221 ACAATAGATG
22999231 AAAA-ATGAGAAAAA
1 AAAAGATGA-AAAAA
*
22999245 AGAAGATGAAAAAA
1 AAAAGATGAAAAAA
*
22999259 AAAA-AAGAAAAAA
1 AAAAGATGAAAAAA
22999272 AAAAG--GAAAAAA
1 AAAAGATGAAAAAA
22999284 AA
1 AA
22999286 TGAGAAAATG
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
12 9 0.25
13 12 0.33
14 11 0.31
15 4 0.11
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.04
Consensus pattern (14 bp):
AAAAGATGAAAAAA
Found at i:22999264 original size:19 final size:21
Alignment explanation
Indices: 22999226--22999304 Score: 64
Period size: 19 Copynumber: 4.0 Consensus size: 21
22999216 TATCAACAAT
22999226 AGATGAAAAATGAGAAAAAAGA
1 AGATGAAAAA-GAGAAAAAAGA
22999248 AGATGAAAAA-A-AAAAAAGA
1 AGATGAAAAAGAGAAAAAAGA
**
22999267 A-AAAAAAAAG-GAAAAAA-A
1 AGATGAAAAAGAGAAAAAAGA
*
22999285 ATGA-GAAAATGA-AAAAAAGA
1 A-GATGAAAAAGAGAAAAAAGA
22999305 TATTCAAATT
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
18 8 0.17
19 26 0.55
20 3 0.06
22 10 0.21
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (21 bp):
AGATGAAAAAGAGAAAAAAGA
Found at i:22999269 original size:12 final size:12
Alignment explanation
Indices: 22999254--22999304 Score: 57
Period size: 12 Copynumber: 4.1 Consensus size: 12
22999244 AAGAAGATGA
22999254 AAAAAAAAAAAG
1 AAAAAAAAAAAG
*
22999266 AAAAAAAAAAGG
1 AAAAAAAAAAAG
**
22999278 AAAAAAAATGAG
1 AAAAAAAAAAAG
22999290 AAAATGAAAAAAAG
1 AAAA--AAAAAAAG
22999304 A
1 A
22999305 TATTCAAATT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
12 24 0.77
14 7 0.23
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (12 bp):
AAAAAAAAAAAG
Found at i:23000650 original size:81 final size:80
Alignment explanation
Indices: 23000535--23001147 Score: 791
Period size: 81 Copynumber: 7.6 Consensus size: 80
23000525 ATGATTGTCA
* * *
23000535 AGGAGCAATTTAATTTTC-AAGTTCGT-TGCCTCTGTTTAGAGGAGCAATTTACATTTC-AAGTT
1 AGGAGCAATTTACTTTTCAAAG-TCGTGTGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAG-T
*
23000597 CGT-TGCCTCTGTTTAG
64 CGTGTGCCTCTGTTGAG
* *
23000613 AGGAGCAATTTACTATTCCAAAGTTCCGT-TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAG
1 AGGAGCAATTTACT-TTTCAAAG-T-CGTGTGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAG
23000677 TCGTGGTGCCTCTGTTGAG
63 TCGT-GTGCCTCTGTTGAG
23000696 AGGAGCAATTTA-TTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTC
1 AGGAGCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTC
*
23000760 GTGGTACCTCTGTTGAG
65 GT-GTGCCTCTGTTGAG
*
23000777 AGGAGCAATTTACTTTTCAAAGTCGTGGTACCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTT
1 AGGAGCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAG-T
*
23000842 CGT-TGCCTCTGTTTAG
64 CGTGTGCCTCTGTTGAG
* *
23000858 AGGAGCAATTTAC-TTTCAAAGTCGTGGTACCTCTGTTGAGAGGAGCAATTTATTTTTCAAAGTC
1 AGGAGCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTC
*
23000922 GTGGTACCTCTGTTGAG
65 GT-GTGCCTCTGTTGAG
*
23000939 AGGAGCAATTTACTTTTCAAAGTCCGT-TGCCTCTGTTTAGAGGAGGCAATTTACTTTTCAAAGT
1 AGGAGCAATTTACTTTTCAAAGT-CGTGTGCCTCTGTTGAGAGGA-GCAATTTACTTTTCAAAGT
23001003 CGTGGTGCCTCTGTTGAG
64 CGT-GTGCCTCTGTTGAG
* *
23001021 AGGAGCAA-TTACTTTTCAAAGTCGTGGTACCTCTGTTGAGAGGAGCAATTTACTTTCCAAAGTC
1 AGGAGCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGT-
* *
23001085 CAT-TGCCTCTGTTTAG
64 CGTGTGCCTCTGTTGAG
* * *
23001101 AGGAGCAATTTAC-TTTCAAAAGTCGTTGAGTCTCTGTTTAGAGGAGC
1 AGGAGCAATTTACTTTTC-AAAGTCG-TGTGCCTCTGTTGAGAGGAGC
23001148 TTCAGCAAAA
Statistics
Matches: 488, Mismatches: 26, Indels: 39
0.88 0.05 0.07
Matches are distributed among these distances:
78 13 0.03
79 10 0.02
80 81 0.17
81 230 0.47
82 123 0.25
83 31 0.06
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.35
Consensus pattern (80 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGTGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCG
TGTGCCTCTGTTGAG
Found at i:23000676 original size:41 final size:40
Alignment explanation
Indices: 23000535--23001147 Score: 791
Period size: 41 Copynumber: 15.2 Consensus size: 40
23000525 ATGATTGTCA
* *
23000535 AGGAGCAATTTAATTTTC-AAGTTCGT-TGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAG-TCGTGTGCCTCTGTTGAG
* *
23000574 AGGAGCAATTTACATTTC-AAGTTCGT-TGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAG-TCGTGTGCCTCTGTTGAG
* *
23000613 AGGAGCAATTTACTATTCCAAAGTTCCGT-TGCCTCTGTTTAG
1 AGGAGCAATTTACT-TTTCAAAG-T-CGTGTGCCTCTGTTGAG
23000655 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAG
1 AGGAGCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTGAG
23000696 AGGAGCAATTTA-TTTTCAAAGTCGTGGTGCCTCTGTTGAG
1 AGGAGCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTGAG
*
23000736 AGGAGCAATTTACTTTTCAAAGTCGTGGTACCTCTGTTGAG
1 AGGAGCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTGAG
*
23000777 AGGAGCAATTTACTTTTCAAAGTCGTGGTACCTCTGTTGAG
1 AGGAGCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTGAG
*
23000818 AGGAGCAATTTACTTTTCAAAGTTCGT-TGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAG-TCGTGTGCCTCTGTTGAG
*
23000858 AGGAGCAATTTAC-TTTCAAAGTCGTGGTACCTCTGTTGAG
1 AGGAGCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTGAG
* *
23000898 AGGAGCAATTTATTTTTCAAAGTCGTGGTACCTCTGTTGAG
1 AGGAGCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTGAG
*
23000939 AGGAGCAATTTACTTTTCAAAGTCCGT-TGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGT-CGTGTGCCTCTGTTGAG
23000979 AGGAGGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAG
1 AGGA-GCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTGAG
*
23001021 AGGAGCAA-TTACTTTTCAAAGTCGTGGTACCTCTGTTGAG
1 AGGAGCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTGAG
* * *
23001061 AGGAGCAATTTACTTTCCAAAGTCCAT-TGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGT-CGTGTGCCTCTGTTGAG
* * *
23001101 AGGAGCAATTTAC-TTTCAAAAGTCGTTGAGTCTCTGTTTAG
1 AGGAGCAATTTACTTTTC-AAAGTCG-TGTGCCTCTGTTGAG
23001142 AGGAGC
1 AGGAGC
23001148 TTCAGCAAAA
Statistics
Matches: 530, Mismatches: 25, Indels: 36
0.90 0.04 0.06
Matches are distributed among these distances:
38 4 0.01
39 65 0.12
40 178 0.34
41 228 0.43
42 55 0.10
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.35
Consensus pattern (40 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGTGCCTCTGTTGAG
Found at i:23000917 original size:203 final size:200
Alignment explanation
Indices: 23000535--23001147 Score: 873
Period size: 203 Copynumber: 3.0 Consensus size: 200
23000525 ATGATTGTCA
* *
23000535 AGGAGCAATTTAATTTTC-AAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACATTTC-AAGTTC
1 AGGAGCAATTTACTTTTCAAAG-TCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAG-TC
* *
23000598 GT--TGCCTCTGTTTAGAGGAGCAATTTACTATTCCAAAGTTCCGTTGCCTCTGTTTAGAGGAGC
64 GTGGTGCCTCTGTTGAGAGGAGCAATTTACT-TTTCAAAGTT-CGTTGCCTCTGTTTAGAGGAGC
23000661 AATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTATTTTCAAAGTCGTGGTGC
127 AATTTAC-TTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTATTTTCAAAGTCGTGGTGC
23000726 CTCTGTTGAG
191 CTCTGTTGAG
* *
23000736 AGGAGCAATTTACTTTTCAAAGTCGTGGTACCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTC
1 AGGAGCAATTTACTTTTCAAAGTCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTC
*
23000801 GTGGTACCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAA
64 GTGGTGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAA
* *
23000866 TTTACTTTCAAAGTCGTGGTACCTCTGTTGAGAGGAGCAATTTATTTTTCAAAGTCGTGGTACCT
129 TTTACTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTA-TTTTCAAAGTCGTGGTGCCT
23000931 CTGTTGAG
193 CTGTTGAG
23000939 AGGAGCAATTTACTTTTCAAAGTCCGTTGCCTCTGTTTAGAGGAGGCAATTTACTTTTCAAAGTC
1 AGGAGCAATTTACTTTTCAAAGT-CGTTGCCTCTGTTTAGAGGA-GCAATTTACTTTTCAAAGTC
* *
23001004 GTGGTGCCTCTGTTGAGAGGAGCAA-TTACTTTTCAAAG-TCGTGGTACCTCTGTTGAGAGGAGC
64 GTGGTGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTTCGT--TGCCTCTGTTTAGAGGAGC
* * * * *
23001067 AATTTACTTTCCAAAGTCCAT--TGCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCGTTGA
127 AATTTACTTT-CAAAGT-CGTGGTGCCTCTGTTGAGAGGAGCAATTTATTTTC-AAAGTCGTGGT
* *
23001130 GTCTCTGTTTAG
189 GCCTCTGTTGAG
23001142 AGGAGC
1 AGGAGC
23001148 TTCAGCAAAA
Statistics
Matches: 375, Mismatches: 23, Indels: 26
0.88 0.05 0.06
Matches are distributed among these distances:
201 25 0.07
202 73 0.19
203 229 0.61
204 21 0.06
205 27 0.07
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.35
Consensus pattern (200 bp):
AGGAGCAATTTACTTTTCAAAGTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGT
GGTGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATT
TACTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTATTTTCAAAGTCGTGGTGCCTCTG
TTGAG
Found at i:23001168 original size:9 final size:9
Alignment explanation
Indices: 23001154--23001268 Score: 101
Period size: 9 Copynumber: 12.7 Consensus size: 9
23001144 GAGCTTCAGC
23001154 AAAAAAAA-
1 AAAAAAAAT
23001162 AAAAAAAA-
1 AAAAAAAAT
*
23001170 ACAAAAAA-
1 AAAAAAAAT
*
23001178 ACAAAAAAT
1 AAAAAAAAT
*
23001187 CAAAAAAAT
1 AAAAAAAAT
*
23001196 CAAAAAAAT
1 AAAAAAAAT
*
23001205 CAAAAAAAT
1 AAAAAAAAT
*
23001214 CAAAAAAAT
1 AAAAAAAAT
*
23001223 CAAAAAAAT
1 AAAAAAAAT
*
23001232 CAAAAAAATAA
1 -AAAAAAA-AT
23001243 AAACAAAAAT
1 AAA-AAAAAT
23001253 AAAAAAAAT
1 AAAAAAAAT
23001262 CAAAAAA
1 -AAAAAA
23001269 TGTTGAGTTG
Statistics
Matches: 96, Mismatches: 6, Indels: 8
0.87 0.05 0.07
Matches are distributed among these distances:
8 23 0.24
9 49 0.51
10 19 0.20
11 5 0.05
ACGTcount: A:0.83, C:0.09, G:0.00, T:0.08
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:23001268 original size:1 final size:1
Alignment explanation
Indices: 23001154--23001260 Score: 61
Period size: 1 Copynumber: 107.0 Consensus size: 1
23001144 GAGCTTCAGC
* * ** ** ** **
23001154 AAAAAAAAAAAAAAAAACAAAAAAACAAAAAATCAAAAAAATCAAAAAAATCAAAAAAATCAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** ** * * *
23001219 AAATCAAAAAAATCAAAAAAATAAAAACAAAAATAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
23001261 TCAAAAAATG
Statistics
Matches: 78, Mismatches: 28, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 78 1.00
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.07
Consensus pattern (1 bp):
A
Found at i:23001466 original size:3 final size:3
Alignment explanation
Indices: 23001454--23001482 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
23001444 GTATTCTATG
23001454 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
23001483 GTATATCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:23001499 original size:4 final size:4
Alignment explanation
Indices: 23001490--23001600 Score: 56
Period size: 4 Copynumber: 27.8 Consensus size: 4
23001480 TATGTATATC
** *
23001490 TTTA TTTA TTTA TTTA TTT- TTTA TCAGA TTAGA TTTA TATGTA TTTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TT-TA TTTA T-T-TA -TTTA
* * *
23001538 TTTA TATA GTTA TATA TTTA -TTA -TTA TATTA -TTA -TTA TTT- TATT-
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TTTA T-TTA
23001582 TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTT
23001601 TTTCTTTTCT
Statistics
Matches: 86, Mismatches: 10, Indels: 22
0.73 0.08 0.19
Matches are distributed among these distances:
3 18 0.21
4 52 0.60
5 12 0.14
6 3 0.03
7 1 0.01
ACGTcount: A:0.28, C:0.01, G:0.04, T:0.68
Consensus pattern (4 bp):
TTTA
Found at i:23001566 original size:14 final size:15
Alignment explanation
Indices: 23001536--23001599 Score: 50
Period size: 14 Copynumber: 4.5 Consensus size: 15
23001526 ATATGTATTT
23001536 TATTTATATAGTTATA
1 TATTTAT-TAGTTATA
23001552 TATTTATTA-TTATA
1 TATTTATTAGTTATA
23001566 T-TATTATTA-TT-T-
1 TAT-TTATTAGTTATA
* *
23001578 TATTT-TTATTTATT
1 TATTTATTAGTTATA
23001592 TATTTATT
1 TATTTATT
23001600 TTTTCTTTTC
Statistics
Matches: 42, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
11 3 0.07
12 5 0.12
13 4 0.10
14 19 0.45
15 4 0.10
16 7 0.17
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.69
Consensus pattern (15 bp):
TATTTATTAGTTATA
Found at i:23001569 original size:11 final size:11
Alignment explanation
Indices: 23001550--23001591 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
23001540 TATATAGTTA
23001550 TATATTTATTAT
1 TATA-TTATTAT
23001562 TATATTATTAT
1 TATATTATTAT
* *
23001573 TATTTTATTTT
1 TATATTATTAT
23001584 TAT-TTATT
1 TATATTATT
23001592 TATTTATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
10 5 0.18
11 19 0.68
12 4 0.14
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TATATTATTAT
Found at i:23001585 original size:48 final size:46
Alignment explanation
Indices: 23001461--23001601 Score: 128
Period size: 48 Copynumber: 3.0 Consensus size: 46
23001451 ATGTATTTTA
* * *
23001461 TTATTATTATTATTATTATTATGTATATCTTTATTTATTTATTTATT
1 TTATTATTA-TATTATTATTATATATATTTTTATTTATATATTTATT
* * * *
23001508 TT-TTATCAGATTA-GATT-TATATGTATTTTATTTATATAGTTATATAT
1 TTATTATTATATTATTATTATATATAT-TTTTATTTATATA-TT-TAT-T
* *
23001555 TTATTATTATATTATTATTAT-TTTATTTTTATTTATTTATTTATT
1 TTATTATTATATTATTATTATATATATTTTTATTTATATATTTATT
23001600 TT
1 TT
23001602 TTCTTTTCTT
Statistics
Matches: 74, Mismatches: 13, Indels: 16
0.72 0.13 0.16
Matches are distributed among these distances:
43 5 0.07
44 14 0.19
45 9 0.12
46 11 0.15
47 7 0.09
48 21 0.28
49 6 0.08
50 1 0.01
ACGTcount: A:0.28, C:0.01, G:0.04, T:0.67
Consensus pattern (46 bp):
TTATTATTATATTATTATTATATATATTTTTATTTATATATTTATT
Found at i:23001999 original size:26 final size:25
Alignment explanation
Indices: 23001970--23002024 Score: 83
Period size: 26 Copynumber: 2.2 Consensus size: 25
23001960 CTGGGAGTGA
23001970 GAAAAAAATTTCTAGAAATTTCTGG
1 GAAAAAAATTTCTAGAAATTTCTGG
* *
23001995 CGAAAAAATTTTCTGGAAATTTCTGG
1 -GAAAAAAATTTCTAGAAATTTCTGG
23002021 GAAA
1 GAAA
23002025 TTTCCAGATT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 4 0.15
26 23 0.85
ACGTcount: A:0.42, C:0.09, G:0.18, T:0.31
Consensus pattern (25 bp):
GAAAAAAATTTCTAGAAATTTCTGG
Found at i:23002191 original size:20 final size:20
Alignment explanation
Indices: 23002166--23002214 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
23002156 TCCGGCGAAC
*
23002166 TTCCGGCGAGATTTTCCAGA
1 TTCCGGCGAGAATTTCCAGA
23002186 TTCCGGCGAGAATTTCCAGA
1 TTCCGGCGAGAATTTCCAGA
*
23002206 ATCCGGCGA
1 TTCCGGCGA
23002215 AATCCCACCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (20 bp):
TTCCGGCGAGAATTTCCAGA
Found at i:23002476 original size:14 final size:15
Alignment explanation
Indices: 23002457--23002498 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 15
23002447 CCGAGCCGAG
23002457 CCGAGCCGTTCTTC-
1 CCGAGCCGTTCTTCT
23002471 CCGAGCCG--CTTCT
1 CCGAGCCGTTCTTCT
23002484 CCGAGCCGTT-TTCT
1 CCGAGCCGTTCTTCT
23002498 C
1 C
23002499 TTCCTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 4 0.16
13 8 0.32
14 13 0.52
ACGTcount: A:0.07, C:0.43, G:0.21, T:0.29
Consensus pattern (15 bp):
CCGAGCCGTTCTTCT
Found at i:23002489 original size:13 final size:14
Alignment explanation
Indices: 23002457--23002493 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
23002447 CCGAGCCGAG
23002457 CCGAGCCGTTCTTC
1 CCGAGCCGTTCTTC
23002471 CCGAGCCG--CTTC
1 CCGAGCCGTTCTTC
23002483 TCCGAGCCGTT
1 -CCGAGCCGTT
23002494 TTCTCTTCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
12 4 0.20
13 8 0.40
14 8 0.40
ACGTcount: A:0.08, C:0.43, G:0.24, T:0.24
Consensus pattern (14 bp):
CCGAGCCGTTCTTC
Found at i:23002579 original size:16 final size:16
Alignment explanation
Indices: 23002545--23002590 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
23002535 CCGCTCCAGG
**
23002545 TTTTTTTTTTTTT-TT
1 TTTTTTTTTTTTTGAA
23002560 TTTTTTTTTTTTTGAA
1 TTTTTTTTTTTTTGAA
*
23002576 TTTTTTTTTATTTGA
1 TTTTTTTTTTTTTGA
23002591 CTTTGATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 13 0.48
16 14 0.52
ACGTcount: A:0.09, C:0.00, G:0.04, T:0.87
Consensus pattern (16 bp):
TTTTTTTTTTTTTGAA
Found at i:23002584 original size:1 final size:1
Alignment explanation
Indices: 23002545--23002572 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
23002535 CCGCTCCAGG
23002545 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
23002573 GAATTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:23002588 original size:10 final size:10
Alignment explanation
Indices: 23002545--23002588 Score: 54
Period size: 10 Copynumber: 4.3 Consensus size: 10
23002535 CCGCTCCAGG
23002545 TTTTTTTTT-
1 TTTTTTTTTA
*
23002554 TTTTTTTTTT
1 TTTTTTTTTA
23002564 TTTTTTTTTGAA
1 TTTTTTTTT--A
23002576 TTTTTTTTTA
1 TTTTTTTTTA
23002586 TTT
1 TTT
23002589 GACTTTGATT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
9 9 0.29
10 13 0.42
12 9 0.29
ACGTcount: A:0.07, C:0.00, G:0.02, T:0.91
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:23002801 original size:152 final size:152
Alignment explanation
Indices: 23002625--23003075 Score: 814
Period size: 152 Copynumber: 3.0 Consensus size: 152
23002615 TTTTTCTTTT
* *
23002625 TTTTTTTTTTTCCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTG
1 TTTTGTTTTTT-CTTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTG
*
23002690 TATACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATA
65 CATACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATA
23002755 ATTTCCAATAATTAATTGGATGA
130 ATTTCCAATAATTAATTGGATGA
23002778 TTTTGTATTTTT-TTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTG
1 TTTTGT-TTTTTCTTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTG
*
23002842 CATACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTTAATTGAGAATA
65 CATACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATA
23002907 ATTTCCAATAATTAATTGGATGA
130 ATTTCCAATAATTAATTGGATGA
*
23002930 TTTTGTTTTTTCTTTAATAAATCCGACGACGGAGCCCCTGCAAGTGAAACAGTAGTTTTTCTTGC
1 TTTTGTTTTTTCTTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGC
23002995 ATACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAA
66 ATACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAA
* *
23003060 TTTCCAACAACTAATT
131 TTTCCAATAATTAATT
23003076 ACTTGGTAAA
Statistics
Matches: 288, Mismatches: 8, Indels: 5
0.96 0.03 0.02
Matches are distributed among these distances:
151 5 0.02
152 273 0.95
153 5 0.02
154 5 0.02
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (152 bp):
TTTTGTTTTTTCTTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGC
ATACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAA
TTTCCAATAATTAATTGGATGA
Found at i:23003849 original size:147 final size:147
Alignment explanation
Indices: 23003582--23003851 Score: 348
Period size: 147 Copynumber: 1.8 Consensus size: 147
23003572 CAGGATCGGT
* * * * *
23003582 AGCACGCAGGGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCAGTCTACTGAGTG
1 AGCACCCAGAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCAGCCGACTGAGTG
* * * * *
23003647 CTCATACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGGTCATTCCATGTCTAAGCCCTAGCC
66 CCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGGTCATCCCATGTCTAAGCCCTAGCC
23003712 AGACCGAAGGTTGTGGC
131 AGACCGAAGGTTGTGGC
* *
23003729 AGCACCCAGAGGGGGACCAGGCTGATGCCCAGCTTGCGCATTATGCCTCTCC-GACCGACTGAGT
1 AGCACCCAGAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCAG-CCGACTGAGT
* * * *
23003793 GCCCGCACGCAT-ATTTCATGGGTTGACTTAGGTATATGGAGTTCATCCCCA-GTCTAAGC
65 GCCCACACGC-TCATTTCATGGGTTGACTTAGGCATACGGAGGTCAT-CCCATGTCTAAGC
23003852 GTATGGAGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
146 1 0.01
147 99 0.95
148 4 0.04
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (147 bp):
AGCACCCAGAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCAGCCGACTGAGTG
CCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGGTCATCCCATGTCTAAGCCCTAGCC
AGACCGAAGGTTGTGGC
Found at i:23003857 original size:26 final size:26
Alignment explanation
Indices: 23003827--23003876 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
23003817 GACTTAGGTA
23003827 TATGGAGTTCATCCCCAGTCTAAGCG
1 TATGGAGTTCATCCCCAGTCTAAGCG
*
23003853 TATGGAGTTCATTCCCAGTCTAAG
1 TATGGAGTTCATCCCCAGTCTAAG
23003877 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TATGGAGTTCATCCCCAGTCTAAGCG
Found at i:23004881 original size:26 final size:26
Alignment explanation
Indices: 23004845--23004897 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23004835 GTTGGCTTAG
23004845 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23004871 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23004897 G
1 G
23004898 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23005770 original size:12 final size:12
Alignment explanation
Indices: 23005753--23005780 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
23005743 GGGTTGTGGT
23005753 AGCAAGACTAGC
1 AGCAAGACTAGC
23005765 AGCAAGACTAGC
1 AGCAAGACTAGC
23005777 AGCA
1 AGCA
23005781 GGATTGGCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.25, G:0.25, T:0.07
Consensus pattern (12 bp):
AGCAAGACTAGC
Found at i:23006442 original size:26 final size:26
Alignment explanation
Indices: 23006406--23006456 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
23006396 ATTGGCATAG
*
23006406 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
23006432 GCATACAGAGTTCATTCCCATTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
23006457 TGATTGGACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23007549 original size:159 final size:159
Alignment explanation
Indices: 23007363--23007742 Score: 383
Period size: 158 Copynumber: 2.4 Consensus size: 159
23007353 CGGTAGGTTG
* * * *
23007363 AGCGTCCGCACG-TCCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
1 AGCGCCCGCACGCT-CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAC
** * * * * * * * *
23007427 CAGTTC-GACTGACGGTTGTGGTAGCGGGACCGACAACATGCAGAGGGGGA-CTAGGTTGATCCC
65 CAGACCGGACCGACGGTTGCGGCAGCAGGACCGACAACACGCAG-GGGGAATC-AGGCTAATCCC
*
23007490 CGGCTTGCGCATTATGCCTCTCTAATCAGCTC
128 CGGCTTGCGCATTATACCTCTCTAATCAGCTC
* * * *
23007522 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCTCA-GTCTAAG-AT
1 AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCAC
* * * * * * *
23007585 CGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGAATCGGGCTAATCCCTG
65 CAGACCGGACCGACGGTTGCGGCAGCAGGACCGACAACACGCAGGGGGAATCAGGCTAATCCCCG
* * * * * *
23007650 GCTTGCGCATTCTATCTCTCTGATCGGTTG
130 GCTTGCGCATTATACCTCTCTAATCAGCTC
* *
23007680 AGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
1 AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
23007743 TACGGAGTTC
Statistics
Matches: 179, Mismatches: 36, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 93 0.52
159 81 0.45
160 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACC
AGACCGGACCGACGGTTGCGGCAGCAGGACCGACAACACGCAGGGGGAATCAGGCTAATCCCCGG
CTTGCGCATTATACCTCTCTAATCAGCTC
Found at i:23007744 original size:26 final size:26
Alignment explanation
Indices: 23007714--23007765 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23007704 GTTGGCTTAG
*
23007714 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23007740 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23007766 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23008978 original size:26 final size:26
Alignment explanation
Indices: 23008939--23008991 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23008929 GTTGGCTTAG
*
23008939 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATAGGGACTTCATTCCCA-GTCTAA
*
23008965 GCATATGGACTTCATTCCCAGTCTAA
1 GCATAGGGACTTCATTCCCAGTCTAA
23008991 G
1 G
23008992 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATAGGGACTTCATTCCCAGTCTAA
Found at i:23009819 original size:158 final size:157
Alignment explanation
Indices: 23009337--23009834 Score: 481
Period size: 159 Copynumber: 3.2 Consensus size: 157
23009327 ATTCTAAGTG
* **
23009337 TATGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCAGGATCGATAGC
1 TATGGAGTTCATT-CCATGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGATAGC
* * * * * * * * *
23009401 ACG-AGGGGGGACTGGGCCGATCCTCGGCTTGCACATTCTACCTCTCCGGT-CGGCTGAGTGCCC
65 ACGCAAGAGGGACCGGGCCAATCC-CGGCTTGCGCATTCTGCCTCT-CTGTCCGGCTGAGCGCCT
* *
23009464 GCACGCTCATTTCGTGGGTTGGCTTAGGCA
128 GCACGCTCGTTTCGTGGGTTGGCTTAGGTA
* * ** * ** * * *
23009494 TAGGGAGTTCATTCCATGTCTAAG-CCCCAGCCAGACTGAGGGTTGTTACAGCGGGACCGGTAGC
1 TATGGAGTTCATTCCATGTCTAAGATCGGA-CCAGACCGAGGGTTGCGACAGCAGGATCGATAGC
* * * * * * *
23009558 ACGCAAAAGAGGATCGGGTCAATCCCTGGCTTGCGCATTATGCCTCT-TCGACCGACTCAGCGCC
65 ACGCAAGAG-GGACCGGGCCAATCCC-GGCTTGCGCATTCTGCCTCTCT-GTCCGGCTGAGCGCC
*
23009622 TGCACGCTCGTTTCGTGGGTTGACTTATGCGTA
127 TGCACGCTCGTTTCGTGGGTTGGCTTA-G-GTA
* ** *
23009655 CA--GAGTTCATTCC-TAGTCTAAGATCGGACTGGTCCGAGGGTTGCGACAGCAGGATCGATAGC
1 TATGGAGTTCATTCCAT-GTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGATAGC
* * *
23009717 ACGCAAGAGGGACCGGGCCAATCCGCGGCTTACGTATTCTGCCTCTCTGTCCGGCTGAGCACCTG
65 ACGCAAGAGGGACCGGGCCAATCC-CGGCTTGCGCATTCTGCCTCTCTGTCCGGCTGAGCGCCTG
*
23009782 CACACTCGTTTCGTGGGTTGGCTTAGGTA
129 CACGCTCGTTTCGTGGGTTGGCTTAGGTA
23009811 TATGGAGTTCATTCCATGTCTAAG
1 TATGGAGTTCATTCCATGTCTAAG
23009835 CATACGAAGT
Statistics
Matches: 267, Mismatches: 58, Indels: 31
0.75 0.16 0.09
Matches are distributed among these distances:
156 9 0.03
157 48 0.18
158 89 0.33
159 115 0.43
160 3 0.01
161 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
TATGGAGTTCATTCCATGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGATAGCA
CGCAAGAGGGACCGGGCCAATCCCGGCTTGCGCATTCTGCCTCTCTGTCCGGCTGAGCGCCTGCA
CGCTCGTTTCGTGGGTTGGCTTAGGTA
Found at i:23009985 original size:184 final size:184
Alignment explanation
Indices: 23009658--23010019 Score: 489
Period size: 184 Copynumber: 2.0 Consensus size: 184
23009648 ATGCGTACAG
* * * * * *
23009658 AGTTCATTCCTAGTCTAAGATCGGACTGGTCCGAGGGTTGCGACAGCAGGATCGATAGCACGCAA
1 AGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTCCGACAGCAGAAACGACAGCACGCAA
* * * *
23009723 GAGGGACCGGGCCAATCCGCGGCTTACGTATTCTGCCTCTCTGTCCGGCTGAGCACCTGCACACT
66 GAGGGACCGGGCCAATCCGCAGCTTACGTATTCTACCTCTCTGTCCGGCTGAGCACCCGCACACC
* * *
23009788 CGTTTCGTGGGTTGGCTTAGGTATATGGAGTTCATTCCATGTCTAAGCATACGA
131 CGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCATACGA
**
23009842 AGTTCATT-CTCAGTCTAAGATCAGACTGGACCGAGGGTTCCGGTAGCAGAAACGACAGCACGC-
1 AGTTCATTCCT-AGTCTAAGATCAGACTGGACCGAGGGTTCCGACAGCAGAAACGACAGCACGCA
* * *
23009905 AGGGAGGACCGGGCCAATTCC-CAGCTTGCGTATTCTACCTCTCTGGT-CGGCTGAGCGCCCGCA
65 AGAG-GGACCGGGCCAA-TCCGCAGCTTACGTATTCTACCTCTCT-GTCCGGCTGAGCACCCGCA
*
23009968 CGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
127 CACCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
23010020 CCCAGCCGGA
Statistics
Matches: 155, Mismatches: 19, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
183 5 0.03
184 145 0.94
185 5 0.03
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
AGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTCCGACAGCAGAAACGACAGCACGCAA
GAGGGACCGGGCCAATCCGCAGCTTACGTATTCTACCTCTCTGTCCGGCTGAGCACCCGCACACC
CGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCATACGA
Found at i:23010128 original size:158 final size:157
Alignment explanation
Indices: 23009870--23010334 Score: 488
Period size: 157 Copynumber: 2.9 Consensus size: 157
23009860 GATCAGACTG
* * * * * *
23009870 GACCGAGGGTTCCGGTAGCAGAAACGACAGCACGCAG-GGAGGACCGGGCCAATTCCCAGCTTGC
1 GACCGAGGGTTGCGGTAGCAGGACCGACAGCACGCAGAGG-GGACCGGGCCGATCCCCGGCTTGC
* * * * * *
23009934 GTATTCTACCTCTCTGGTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAG
65 GCATTCTGCCTCTCCGGTCGGCTG-GCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAG
* *
23009999 GAGTTCATTCCATGTCTAAGCCCCAGCCG
129 GAGTTCATTCCATGTCTAAGCCCCAACCA
* * ** *
23010028 GACTGAGGGTTGTGGTAGTGGGACCGACAGCACGCAGAAGGGGACCGGGCTGATCCCCGGCTTGC
1 GACCGAGGGTTGCGGTAGCAGGACCGACAGCACGCAG-AGGGGACCGGGCCGATCCCCGGCTTGC
* * * *
23010093 G-ATTATGCCTCTCCGGTCGGCTCGGCACCTACACGCTCATTTCATGGGTTGACTTAGGCATACA
65 GCATTCTGCCTCTCCGGTCGGCT-GGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATA-A
** * *
23010157 -GAGTTCATTCCA-GTCTAAGATCGAACTA
128 GGAGTTCATTCCATGTCTAAGCCCCAACCA
* * * * * *
23010185 GACCGAGGGTTGCGGTAGCAGGATCGACAGTACGCATAGGGGACCCGACCGATCCCCGACTTGCG
1 GACCGAGGGTTGCGGTAGCAGGACCGACAGCACGCAGAGGGGACCGGGCCGATCCCCGGCTTGCG
* * * * * *
23010250 CATTCTGCCTCTTCGGTCGGCTAAGCACATGCACGCTCGATTCGTGGGTTGGCTTAGGCATACGG
66 CATTCTGCCTCTCCGGTCGGCT-GGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGG
*
23010315 AGTTCATTCCATGCCTAAGC
130 AGTTCATTCCATGTCTAAGC
23010335 ATACGGAGTT
Statistics
Matches: 250, Mismatches: 50, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
156 24 0.10
157 103 0.41
158 98 0.39
159 23 0.09
160 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GACCGAGGGTTGCGGTAGCAGGACCGACAGCACGCAGAGGGGACCGGGCCGATCCCCGGCTTGCG
CATTCTGCCTCTCCGGTCGGCTGGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGA
GTTCATTCCATGTCTAAGCCCCAACCA
Found at i:23010271 original size:157 final size:153
Alignment explanation
Indices: 23009834--23010325 Score: 472
Period size: 158 Copynumber: 3.1 Consensus size: 153
23009824 CCATGTCTAA
* *
23009834 GCATAC-GAAGTTCATTCTCAGTCTAAGATCAGACTGGACCGAGGGTTCCGGTAGCAGAAACGAC
1 GCATACAG-AGTTCATTC-CAGTCTAAGATCA-ACTGGACCGAGGGTTGCGGTAGCAGGAACGAC
* * * *
23009898 AGCACGCAGGGAGGACCGGGCCAATTCCC-AGCTTGCGTATTCTACCTC-TCTGGTCGGCTGAGC
63 AGCACGCAAGG-GGACCGGGCCGATCCCCGA-CTTGCG-ATTCTGCCTCTTC-GGTCGGCTG-GC
* * * *
23009961 GCCCGCACGCCCGTTTCATGGGTTGGCTTAG
123 ACCTGCACGCTCATTTCATGGGTTGGCTTAG
** * * * * ** *
23009992 GCATA-AGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGTAGTGGGACCGAC
1 GCATACA-GAGTTCATTCCA-GTCTAAG-ATCAACTGGACCGAGGGTTGCGGTAGCAGGAACGAC
* * * *
23010056 AGCACGCAGAAGGGGACCGGGCTGATCCCCGGCTTGCGATTATGCCTCTCCGGTCGGCTCGGCAC
63 AGCACGC--AAGGGGACCGGGCCGATCCCCGACTTGCGATTCTGCCTCTTCGGTCGGCT-GGCAC
* *
23010121 CTACACGCTCATTTCATGGGTTGACTTAG
125 CTGCACGCTCATTTCATGGGTTGGCTTAG
* *
23010150 GCATACAGAGTTCATTCCAGTCTAAGATCGAACTAGACCGAGGGTTGCGGTAGCAGGATCGACAG
1 GCATACAGAGTTCATTCCAGTCTAAGATC-AACTGGACCGAGGGTTGCGGTAGCAGGAACGACAG
* * * * *
23010215 TACGCATAGGGGACCCGACCGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGCTAAGCACAT
65 CACGCA-AGGGGACCGGGCCGATCCCCGACTTGCG-ATTCTGCCTCTTCGGTCGGCT-GGCACCT
*
23010280 GCACGCTCGA-TTCGTGGGTTGGCTTAG
127 GCACGCTC-ATTTCATGGGTTGGCTTAG
*
23010307 GCATACGGAGTTCATTCCA
1 GCATACAGAGTTCATTCCA
23010326 TGCCTAAGCA
Statistics
Matches: 271, Mismatches: 49, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
155 1 0.00
156 25 0.09
157 104 0.38
158 112 0.41
159 26 0.10
160 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (153 bp):
GCATACAGAGTTCATTCCAGTCTAAGATCAACTGGACCGAGGGTTGCGGTAGCAGGAACGACAGC
ACGCAAGGGGACCGGGCCGATCCCCGACTTGCGATTCTGCCTCTTCGGTCGGCTGGCACCTGCAC
GCTCATTTCATGGGTTGGCTTAG
Found at i:23010716 original size:26 final size:26
Alignment explanation
Indices: 23010686--23010738 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23010676 GTTGACTTAG
23010686 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
23010712 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
23010738 G
1 G
23010739 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:23011072 original size:158 final size:155
Alignment explanation
Indices: 23010712--23011134 Score: 400
Period size: 158 Copynumber: 2.7 Consensus size: 155
23010702 CCCAGTCTAA
* *
23010712 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGG-AGCAAGATCAACA
1 GCATACG-AGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGACA
* * * * * * *
23010776 GCACGTAGGGGGACTGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTTAGCGCCC
64 GCATGCAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCATCTCCGACCGGCTCAGCGCCC
* * *
23010841 GCACGCCCATTTCATGGGTTGGCTTAG
129 GCACGACCATTTCATGGATTGACTTAG
* * ** * * * *
23010868 GCATAGGGAGTTCGTTCCATGTCTAAGCCCCAG-CCAGACCAAGGGTTGTGGCAGCGAGACCGAC
1 GCATA-CGAGTTCATTCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGAC
* * *
23010932 AGCATGCAGAGGGGACCGGGCTGATCCCTAGCTTGCGCATTATGCATCTTCGACCGGCTCAGTGC
63 AGCATGCAG-GGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCATCTCCGACCGGCTCAGCGC
* *** * *
23010997 CCGTACGATTGTTTCGTGGATTGACTTAT
127 CCGCACGACCATTTCATGGATTGACTTAG
* * * * *
23011026 GCATACAGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAGTAGGATCGACA
1 GCATAC-GAGTTCATTCC-AGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGACA
* * * * *
23011091 GCATGCAGGGGGCACCAGGCTGATCCTCGGCATGTGCATTATGC
64 GCATGCAGGGGG-ACCGGGCTGATCCCCAGCTTGCGCATTATGC
23011135 CTCTTCGGCC
Statistics
Matches: 210, Mismatches: 48, Indels: 16
0.77 0.18 0.06
Matches are distributed among these distances:
155 3 0.01
156 34 0.16
157 27 0.13
158 145 0.69
159 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (155 bp):
GCATACGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGACAGC
ATGCAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCATCTCCGACCGGCTCAGCGCCCGC
ACGACCATTTCATGGATTGACTTAG
Found at i:23011452 original size:26 final size:26
Alignment explanation
Indices: 23011423--23011478 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
23011413 TGGGTTTGCT
*
23011423 TAAGCATAGGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
23011449 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
23011475 TAAG
1 TAAG
23011479 ATCAGACTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:23011595 original size:184 final size:184
Alignment explanation
Indices: 23011275--23011637 Score: 469
Period size: 184 Copynumber: 2.0 Consensus size: 184
23011265 TAGGCATCCA
* * * **
23011275 GAGTTCATTCCCAGTCTAAGATCGGATCGGCCCGAGGGTTGCGGTAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGATTGCGACAGCAGGATCGACAGCACGCA
* * * * **
23011340 GTGGGGACTGGGCTGATCCCCAGCTTGCACATTCTGCCTCTCTGGCCGGTTGAGCGCCAGCACGT
66 GGGGGGACTGGGCTGATCCCCAGCTTGCACATTCTACCTCTCTGGCCGGCTGAGCACCAGCACAC
* * *
23011405 TCGTTTCGTGGGTTTGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCATACG
131 TCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATACG
* * *
23011459 GAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCGAGGATTGTGACAGTAGGATCGGCAGCACGC
1 GAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGATTGCGACAGCAGGATCGACAGCACGC
* * * * * *
23011523 AGGGGGGA-TCGGGTTGATCCTCGGCTTGCCCATTCTACCTCTCTGGCCGGCTGAGCACCCGCAT
65 AGGGGGGACT-GGGCTGATCCCCAGCTTGCACATTCTACCTCTCTGGCCGGCTGAGCACCAGCAC
* *
23011587 ACTCGTTTCATGGGTTGGCTTAGGCGTACGGAGTTCATTCCATGTCTAAGC
129 ACTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGC
23011638 CCCAGCTGGA
Statistics
Matches: 152, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
183 2 0.01
184 150 0.99
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (184 bp):
GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGATTGCGACAGCAGGATCGACAGCACGCA
GGGGGGACTGGGCTGATCCCCAGCTTGCACATTCTACCTCTCTGGCCGGCTGAGCACCAGCACAC
TCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATACG
Found at i:23012286 original size:158 final size:157
Alignment explanation
Indices: 23011826--23012321 Score: 493
Period size: 158 Copynumber: 3.1 Consensus size: 157
23011816 CTAAGCGTAT
* * *
23011826 GGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACG
1 GGAGTTCATT-CCATGTCTAAGATCAGACCGGTCCGAGGGTTGCGACAGCAGGATCGATAGCACG
* * * * * * * * * *
23011890 CAGGAAGGACTGGGTCGATCCTCGGCTTGCACATTCTACCTCTCCGGT-CAGCTGAGCGCCCGCA
65 CAAGAGGGACCGGGCCAATCC-CGGCTTGCGCATTCTGCCTCT-CTGTCCGGCTGAGCGCCTGCA
* *
23011954 CGCTCATTTCGTGGGTTGGCTTAGGCATAG
128 CGCTCGTTTCGTGGGTTGGCTTAGGCATAC
** ** * ** * *
23011984 GGAGTTCATTCCATGTCTAAGCCCCAG-CCGGAT-TAAGGGTTGTTG-CAGTGGGACCGGTAGCA
1 GGAGTTCATTCCATGTCTAAG-ATCAGACCGG-TCCGAGGGTTG-CGACAGCAGGATCGATAGCA
* * * * * *
23012046 CGCAAAAGAGGATCGGGCCAATCCCTGGCTTGCGCATTATGCCTCT-TCGACCGACTCAGCGCCT
63 CGCAAGAG-GGACCGGGCCAATCCC-GGCTTGCGCATTCTGCCTCTCT-GTCCGGCTGAGCGCCT
* * *
23012110 GCACGCTCGTTTCGTGGGTTGACTTATGCGTAC
125 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* *
23012143 AGAGTTCATTCC-TAGTCTAAGATCGGACCGGTCCGAGGGTTGCGACAGCAGGATCGATAGCACG
1 GGAGTTCATTCCAT-GTCTAAGATCAGACCGGTCCGAGGGTTGCGACAGCAGGATCGATAGCACG
* *
23012207 CAAGAGGGACCGGGCCAATCCGCGGCTTGCGTATTCTGCCTCTCTGTCCGGCTGAGCACCTGCAC
65 CAAGAGGGACCGGGCCAATCC-CGGCTTGCGCATTCTGCCTCTCTGTCCGGCTGAGCGCCTGCAC
* *
23012272 ACTCGTTTCGTGGGTTGGCTTAGGTATAC
129 GCTCGTTTCGTGGGTTGGCTTAGGCATAC
23012301 GGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
23012322 CATACGGAGT
Statistics
Matches: 265, Mismatches: 58, Indels: 30
0.75 0.16 0.08
Matches are distributed among these distances:
157 3 0.01
158 141 0.53
159 121 0.46
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GGAGTTCATTCCATGTCTAAGATCAGACCGGTCCGAGGGTTGCGACAGCAGGATCGATAGCACGC
AAGAGGGACCGGGCCAATCCCGGCTTGCGCATTCTGCCTCTCTGTCCGGCTGAGCGCCTGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATAC
Found at i:23012333 original size:26 final size:26
Alignment explanation
Indices: 23012297--23012347 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23012287 TGGCTTAGGT
23012297 ATACGGAGTTCATTC-CATGTCTAAGC
1 ATACGGAGTTCATTCTCA-GTCTAAGC
23012323 ATACGGAGTTCATTCTCAGTCTAAG
1 ATACGGAGTTCATTCTCAGTCTAAG
23012348 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCTCAGTCTAAGC
Found at i:23012467 original size:184 final size:184
Alignment explanation
Indices: 23012144--23012504 Score: 507
Period size: 184 Copynumber: 2.0 Consensus size: 184
23012134 TATGCGTACA
* * *
23012144 GAGTTCATTCCTAGTCTAAGATCGGACCGGTCCGAGGGTTGCGACAGCAGGATCGATAGCACGCA
1 GAGTTCATTCCTAGTCTAAGATCGGACCGGTCCGAGGGTTCCGACAGCAGGAACGATAGCACACA
* *
23012209 AGAGGGACCGGGCCAATCCGCGGCTTGCGTATTCTGCCTCTCTGTCCGGCTGAGCACCTGCACAC
66 AGAGGGACCGGGCCAATCCGCGGCTTGCGTATTCTACCTCTCTGTCCGGCTGAGCACCCGCACAC
* * * *
23012274 TCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCATACG
131 CCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCATACG
* * *
23012328 GAGTTCATT-CTCAGTCTAAGATCGGACCGGAT-TGAGGGTTCCGGCAGTAGGAACGATAGCACA
1 GAGTTCATTCCT-AGTCTAAGATCGGACCGG-TCCGAGGGTTCCGACAGCAGGAACGATAGCACA
* *
23012391 C-AGGGAGGACCGGGCCAATTCC-CGGCTTGCGTATTCTACCTCTCTAG-CCGGCTGAGCGCCCG
64 CAAGAG-GGACCGGGCCAA-TCCGCGGCTTGCGTATTCTACCTCTCT-GTCCGGCTGAGCACCCG
*
23012453 CACGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
126 CACACCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
23012505 TCCCCAGCTG
Statistics
Matches: 157, Mismatches: 15, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
183 5 0.03
184 147 0.94
185 5 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (184 bp):
GAGTTCATTCCTAGTCTAAGATCGGACCGGTCCGAGGGTTCCGACAGCAGGAACGATAGCACACA
AGAGGGACCGGGCCAATCCGCGGCTTGCGTATTCTACCTCTCTGTCCGGCTGAGCACCCGCACAC
CCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCATACG
Found at i:23012823 original size:26 final size:26
Alignment explanation
Indices: 23012793--23012845 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23012783 GTTGGCTTAG
23012793 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
23012819 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
23012845 G
1 G
23012846 ATTCGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:23012865 original size:498 final size:501
Alignment explanation
Indices: 23011769--23012874 Score: 1438
Period size: 501 Copynumber: 2.2 Consensus size: 501
23011759 GAGCGTCCGT
* * * * * *
23011769 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATCCCCA-ATCTAAGCGTATGGAGTTC
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTC
* * ** * * *
23011833 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGCAGGAAGG
65 ATTTCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGTAGGAACGACAGCACACAGGAAGG
* * * * * *
23011898 ACTGGGTCGATCCTCGGCTTGCACATTCTACCTCTCCGGTCAGCTGAGCGCCCGCACGCTCATTT
130 ACCGGGCCAATCCTCGGCTTGCACATTCTACCTCTCCAGCCAGCTGAGCGCCCGCACGCCCATTT
* ** * *
23011963 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATTAAGGGTTGTT
195 CGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACGAAGGGTTATG
** * * *
23012028 GCAGTGGGACCGGTAGCACGCAAAAGAGGATCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTT
260 GCAGTGGGACCGACAGCACGCAAAAGAGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTC
* * * *
23012093 CGACCGACTCAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTATGCGTACAGAGTTCATTCCTAG
325 CGACCGACTCAACGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAG
* * *
23012158 TCTAAGATCGGACCGGTCCGAGGGTTGCGACAGCAGGATCGATAGCACGCAAGAGGGACCGGGCC
390 TCTAAGATCGGACCGGACCCAGGGTTGCGACAGCAGGATCGATAGCACGCAAGAGGGACCCGGCC
* * * *
23012223 AATCCGCGGCTTGCGTATTCTGCCTCTCTGTCCGGCTGAGCACCTGC
455 AATCCCCGACTTGCGTATTCTGCCTCTCTGTCCGGCTAAGCACATGC
* * *
23012270 ACACTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCA
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCA
* ** * * *
23012335 -TTCTCAGTCTAAGATCGGACCGGATTGAGGGTTCCGGCAGTAGGAACGATAGCACACAGGGAGG
66 TTTC-CAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGTAGGAACGACAGCACACAGGAAGG
** * *
23012399 ACCGGGCCAATTCC-CGGCTTGCGTATTCTACCTCTCTAGCCGGCTGAGCGCCCGCACGCCCATT
130 ACCGGGCCAA-TCCTCGGCTTGCACATTCTACCTCTCCAGCCAGCTGAGCGCCCGCACGCCCATT
* *
23012463 TCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAATCCCCAGCTGGAACGAA-GGTTA
194 TCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGG-ACGAAGGGTTA
* * * * **
23012527 TGGTAGTGGGACCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCG-A-TATGCCTC
258 TGGCAGTGGGACCGACAGCACGCAAAAGAGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTC
** *
23012590 TCCGGTCGGCTCAACGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CT
323 TCCGACCGACTCAACGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCT
* * * * *
23012654 AGTCTAAGATCGGATCGGACCCAGGGTTGCGGCAGCAGGATCGATAGTACGTAGGAGGGACCCGG
388 AGTCTAAGATCGGACCGGACCCAGGGTTGCGACAGCAGGATCGATAGCACGCAAGAGGGACCCGG
* *
23012719 CCGATCCCCGACTTGTGTATTCTGCCTCTCCTG-CCGGCTAAGCACATGC
453 CCAATCCCCGACTTGCGTATTCTGCCTCT-CTGTCCGGCTAAGCACATGC
*
23012768 ACGCTCGATTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCA
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCA
*
23012833 TTTCCAGTCTAAGATTC-GACCGAACCGAGGGTTACGGCAGTA
66 TTTCCAGTCTAAGA-TCAGACCGGACCGAGGGTTACGGCAGTA
23012875 AGACCAGTAG
Statistics
Matches: 520, Mismatches: 78, Indels: 17
0.85 0.13 0.03
Matches are distributed among these distances:
498 190 0.37
499 70 0.13
500 6 0.01
501 248 0.48
502 6 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (501 bp):
ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCA
TTTCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGTAGGAACGACAGCACACAGGAAGGA
CCGGGCCAATCCTCGGCTTGCACATTCTACCTCTCCAGCCAGCTGAGCGCCCGCACGCCCATTTC
GTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACGAAGGGTTATGG
CAGTGGGACCGACAGCACGCAAAAGAGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCC
GACCGACTCAACGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGT
CTAAGATCGGACCGGACCCAGGGTTGCGACAGCAGGATCGATAGCACGCAAGAGGGACCCGGCCA
ATCCCCGACTTGCGTATTCTGCCTCTCTGTCCGGCTAAGCACATGC
Found at i:23013208 original size:26 final size:26
Alignment explanation
Indices: 23013172--23013224 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23013162 GTTGACTTAG
23013172 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
23013198 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
23013224 G
1 G
23013225 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23013344 original size:26 final size:26
Alignment explanation
Indices: 23013288--23013338 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
23013278 GGGCTGACCC
23013288 CGGCTTGCGCATTCTGCCTCTCCGGT
1 CGGCTTGCGCATTCTGCCTCTCCGGT
23013314 CGGCTTGCGCATTCTGCCTCTCCGG
1 CGGCTTGCGCATTCTGCCTCTCCGG
23013339 CTGGCTCAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.04, C:0.39, G:0.27, T:0.29
Consensus pattern (26 bp):
CGGCTTGCGCATTCTGCCTCTCCGGT
Found at i:23014163 original size:26 final size:26
Alignment explanation
Indices: 23014127--23014179 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23014117 GTTGACTTAG
*
23014127 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
23014153 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
23014179 G
1 G
23014180 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23014732 original size:355 final size:355
Alignment explanation
Indices: 23014079--23014744 Score: 843
Period size: 355 Copynumber: 1.9 Consensus size: 355
23014069 AAACGGGTCG
* * * * * *
23014079 TCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCC
1 TCTCTGGCCGGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCC
* * * ***
23014144 CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGCA
66 ACAATCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTGCGGCAGCA
* * * * * *
23014209 GGATCGGCAGCATGCAGGGGGGACCGGGCCGATCCCTGGCTTACGTATTTTGCCTCTTCGATCGA
131 GGATCGGCAGCATGCAGGGGGGACCAGACCGATCCCCGGCTTACATATTCTGCCTCTTCGACCGA
* * * * **
23014274 CTGAGCGCCTGCACGCCCATTTCGTGGGTTGGCTTTGGAATAGGGAGTTCATTCCATGCCTAAGC
196 CTCAGCACCCGCACGCCCATTTCGTGGGTTGACTTTGGAATACAGAGTTCATTCCATGCCTAAGC
* ** ** *
23014339 CCCAGTCGGACTGAGGGTTGTGGTAGCGGGACCGACAGCACGCAGGGGGGATTGGGCCGATCTCC
261 CCCAGTCGGACCGAGGGTTACGACAGCAGGACCGACAGCACGCAGGGGGGATTGGGCCGATCTCC
23014404 GACTTGCGCATTATGCCTTTTCGGCCGGCC
326 GACTTGCGCATTATGCCTTTTCGGCCGGCC
* *
23014434 TCTCTGGCCGGTTGAGCACCCATACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCC
1 TCTCTGGCCGGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCC
* * * *
23014499 ATAATCTAAGGATGCAAAGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTGCGGCAGTA
66 ACAATCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTGCGGCAGCA
* * * *
23014564 GGATCGGCAGCATGCAGGGGGGGCCAGACCGGTCCCCGGCTTGCATATTCTGCCTCTTCGACCGG
131 GGATCGGCAGCATGCAGGGGGGACCAGACCGATCCCCGGCTTACATATTCTGCCTCTTCGACCGA
* * * *
23014629 CTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAT-GCATACAGAGTTCATTCCCA-GTCTAA
196 CTCAGCACCCGCACGCCCATTTCGTGGGTTGACTT-TGGAATACAGAGTTCATT-CCATGCCTAA
** * * *
23014692 G-ATCGGATCGGACCGAGGGTTACGACAGCAGGATCGACAGCACGCGGGGGGGA
259 GCCCCAG-TCGGACCGAGGGTTACGACAGCAGGACCGACAGCACGCAGGGGGGA
23014745 CCGGGCTAAT
Statistics
Matches: 259, Mismatches: 49, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
354 2 0.01
355 253 0.98
356 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (355 bp):
TCTCTGGCCGGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCC
ACAATCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTGCGGCAGCA
GGATCGGCAGCATGCAGGGGGGACCAGACCGATCCCCGGCTTACATATTCTGCCTCTTCGACCGA
CTCAGCACCCGCACGCCCATTTCGTGGGTTGACTTTGGAATACAGAGTTCATTCCATGCCTAAGC
CCCAGTCGGACCGAGGGTTACGACAGCAGGACCGACAGCACGCAGGGGGGATTGGGCCGATCTCC
GACTTGCGCATTATGCCTTTTCGGCCGGCC
Found at i:23014805 original size:158 final size:158
Alignment explanation
Indices: 23014516--23014850 Score: 370
Period size: 158 Copynumber: 2.1 Consensus size: 158
23014506 AAGGATGCAA
* * * * * *
23014516 AGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTGCGGCAGTAGGATCGGCAGCATGCAG
1 AGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGACAGCAGGATCGACAGCACGCAG
** * * * *
23014581 GGGGGGCCAGACCGGTCCCCGGCTTGCATATTCTGCCTCTTCGACCGGCTCAGCACCCGCACGCT
66 GGGGGGCCAGACCAATCCCCGGCTTGCACATTCTGCCTCTCCGACCGACTCAGCACCAGCACGCT
* *
23014646 CGTTTCGTGGGTT-GACTTATGCATACAG
131 CGTTTCATGGGTTAG-CTTAGGCATACAG
* **
23014674 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGCAGGATCGACAGCACGC-G
1 AGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGACAGCAGGATCGACAGCACGCAG
* * * * * * * * *
23014738 GGGGGGACCGGGCTAATCCCCGGTTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCAGCATGC
66 GGGGGG-CCAGACCAATCCCCGGCTTGCACATTCTGCCTCTCCGACCGACTCAGCACCAGCACGC
*
23014803 TCGTTTCATGGGTTAGCTTAGGCATACGG
130 TCGTTTCATGGGTTAGCTTAGGCATACAG
*
23014832 AGCTCATT-CCATGTCTAAG
1 AGTTCATTCCCA-GTCTAAG
23014851 CATACGGAGT
Statistics
Matches: 146, Mismatches: 28, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
157 10 0.07
158 135 0.92
159 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGACAGCAGGATCGACAGCACGCAG
GGGGGGCCAGACCAATCCCCGGCTTGCACATTCTGCCTCTCCGACCGACTCAGCACCAGCACGCT
CGTTTCATGGGTTAGCTTAGGCATACAG
Found at i:23014854 original size:26 final size:26
Alignment explanation
Indices: 23014824--23014876 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23014814 GTTAGCTTAG
23014824 GCATACGGAGCTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
*
23014850 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
23014876 G
1 G
23014877 ATTTTGAGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:23015088 original size:26 final size:26
Alignment explanation
Indices: 23015052--23015102 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23015042 TGACTTAGGG
23015052 ATACAGAGTTCA-TCCTCAGTCTAAGC
1 ATACAGAGTTCATTCC-CAGTCTAAGC
*
23015078 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
23015103 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:23015474 original size:159 final size:155
Alignment explanation
Indices: 23015076--23015569 Score: 467
Period size: 159 Copynumber: 3.1 Consensus size: 155
23015066 CTCAGTCTAA
* * * *
23015076 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGGCAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACTGAAGGTTGCGGTAGCAGGATCGACA
* * * *
23015141 GCACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGTTGAGCGCT
65 GCACGC-AGGGGGACCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* *
23015206 CGCATGCCCGTTTCATGGGTTGGCTTAG
128 CGCATGCTCTTTTCATGGGTTGGCTTAG
* * * * * * *
23015234 GCATAGGGAGTTCATT-CCATGTCTAAGACCCAG-CCGAATCGATGGTTGTGGCT-G-AGGGACC
1 GCATACGGAGTTCATTCCCA-GTCTAAGA-TCAGACGGACT-GAAGGTTGCGG-TAGCA-GGATC
* * * *
23015295 GATAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATTCCTCTCCGACCGGCTCA
61 GACAGCACGC--AGGGGGACCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGA
* * *
23015360 GCACCCACATGCTCTTTTCATGGGTTGACTTAG
123 GCGCCCGCATGCTCTTTTCATGGGTTGGCTTAG
* * * *
23015393 GCTTACGGAGTTCATTCCCAGCCTAAGATCAGACTGGACTGAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACTGAAGGTTGCGGTAGCAGGATCGACA
** * ** ***
23015458 GCATACAGGTGAGGACCGGGCTGATCACCGGCTTATGCATTCTGCCTCTCCGGTTGGCTGAGCGC
65 GCACGCAGG-G-GGACCGGGC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* *
23015523 CCGCACGCTCGTTTT-GTGGGTTGGCTTAG
127 CCGCATGCTC-TTTTCATGGGTTGGCTTAG
23015552 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
23015570 ATGTCTTAGC
Statistics
Matches: 267, Mismatches: 54, Indels: 29
0.76 0.15 0.08
Matches are distributed among these distances:
157 10 0.04
158 51 0.19
159 195 0.73
160 11 0.04
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACTGAAGGTTGCGGTAGCAGGATCGACAG
CACGCAGGGGGACCGGGCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGC
ATGCTCTTTTCATGGGTTGGCTTAG
Found at i:23016064 original size:26 final size:26
Alignment explanation
Indices: 23016034--23016085 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23016024 TTGACTTAGA
*
23016034 CATATGGAGTTCATCCCCAGTCTAAG
1 CATATAGAGTTCATCCCCAGTCTAAG
*
23016060 CATATAGAGTTCATTCCCAGTCTAAG
1 CATATAGAGTTCATCCCCAGTCTAAG
23016086 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATATAGAGTTCATCCCCAGTCTAAG
Found at i:23016814 original size:157 final size:157
Alignment explanation
Indices: 23016304--23016888 Score: 502
Period size: 159 Copynumber: 3.7 Consensus size: 157
23016294 CACATAGAAA
* * * ** * * * * *
23016304 GGGATCGGGTTAATCCCCAGCTTGCGTATTATGCCTCTCC-GACCGGCTGAGCGCTCGTACACTC
1 GGGATCGGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCC-GCTGAGCGCCCGCACGCTC
** *
23016368 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATTGTGTCGGACCGAGGG
65 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGA-TCAGCCGGACCGAGGG
* ** *
23016432 TTGCAGTAGCAAGATCGACCAGCACACAGGG
128 TTGCAGTAGCAGGATC-AATAGCACGCAGGG
* * * * * *
23016463 AGGCACCGGGCCT-ATCCCCGGCTTGCGCATTCTGCCTCGT-C-GACCGTTGAGCGCCCGCACAC
1 -GGGATCGGG-CTGATCCCCGGCTTGCACATTCTGCCTC-TCCGGTCCGCTGAGCGCCCGCACGC
* * * ** *
23016525 CCGTTTCGTGGGTT-AGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAG
63 TCGTTTCATGGGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAAG-ATCAGCCGGACCGAG
** * * * * * *
23016589 GGTTGTTGCAGCGGGACCAGTAACACGCTGAGG
126 GGTTGCAGTAGCAGGATCAATAGCACGCAG-GG
* * * * * * * **
23016622 GGGATCGAG-TCGATCCTCGACTTGCACATTATGCCTCTCCGGTCTGCTCAGTGTTCGCACGCTC
1 GGGATCGGGCT-GATCCCCGGCTTGCACATTCTGCCTCTCCGGTCCGCTGAGCGCCCGCACGCTC
* * * *
23016686 ATTTCATGGATTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGATCAGACCGGACTGATGGT
65 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAG-CCGGACCGAGGGT
*
23016750 TGCAATAGCAGGATCAATAGCACGCAGGG
129 TGCAGTAGCAGGATCAATAGCACGCAGGG
* * *
23016779 GGGATCGGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGGTGAGCGCCCGCACGCTCG
1 GGGATCGGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCCGCTGAGCGCCCGCACGCTCG
* *
23016844 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
23016889 CATACGGAGT
Statistics
Matches: 333, Mismatches: 78, Indels: 30
0.76 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 91 0.27
158 79 0.24
159 124 0.37
160 36 0.11
161 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (157 bp):
GGGATCGGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCCGCTGAGCGCCCGCACGCTCG
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGCCGGACCGAGGGTTG
CAGTAGCAGGATCAATAGCACGCAGGG
Found at i:23016912 original size:26 final size:26
Alignment explanation
Indices: 23016862--23016914 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23016852 GTTGGCTTAG
*
23016862 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
23016888 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
23016914 G
1 G
23016915 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:23017446 original size:25 final size:26
Alignment explanation
Indices: 23017417--23017466 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
23017407 GTTGACTTAG
23017417 GCATACAGAGTTCAT-CCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
**
23017442 GCATATGGAGTTCATCCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
23017467 CGATTGAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23017884 original size:157 final size:159
Alignment explanation
Indices: 23017526--23017900 Score: 406
Period size: 159 Copynumber: 2.4 Consensus size: 159
23017516 GGGCTCGACA
** * * *
23017526 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
1 CCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCC
** * *
23017591 AGACCAAGGGTTGGGGCAGTGGGACCGGCAGCACGCAGAGGGGGACTGGGCCGATCCCCGACTTT
66 AGACCAAGGGTTGGGGCAGCAGGACCGACAGCACGCAGAGGGGGACTGGGCCGAACCCCGACTTT
*
23017656 CGCATTATGCCTCTTCGATCGGCTCAGCG
131 CGCATTATGCCTCTTCCATCGGCTCAGCG
* * ** *
23017685 CCCGCACGCTT-GTTTCATGGCTTAACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAG
1 CCCGCACG-TTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG
* * * * *
23017747 ACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGACTGGG-CTAACCCTTG-
64 -CCAGACCAAGGGTTGGGGCAGCAGGACCGACAGCACGCAGAGGGGGACTGGGCCGAACCC-CGA
* *
23017809 CTTGT-GCATTCTGCCTC-TCCATCCGGCTGAGCG
127 CTT-TCGCATTATGCCTCTTCCAT-CGGCTCAGCG
* * * *
23017842 CCCGCACGTTCGTTTCGTGGGTTGGCTTCGGTATATGGAGTTCATTACATGTCTAAGCA
1 CCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
23017901 TACGGAGTTC
Statistics
Matches: 177, Mismatches: 30, Indels: 19
0.78 0.13 0.08
Matches are distributed among these distances:
156 8 0.05
157 71 0.40
158 17 0.10
159 78 0.44
160 3 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
CCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCC
AGACCAAGGGTTGGGGCAGCAGGACCGACAGCACGCAGAGGGGGACTGGGCCGAACCCCGACTTT
CGCATTATGCCTCTTCCATCGGCTCAGCG
Found at i:23018287 original size:25 final size:26
Alignment explanation
Indices: 23018251--23018302 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
23018241 GTTGACTTAG
*
23018251 GCATACGAAGTTCA-TCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
23018276 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
23018302 G
1 G
23018303 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:23018775 original size:158 final size:157
Alignment explanation
Indices: 23018276--23018777 Score: 431
Period size: 158 Copynumber: 3.2 Consensus size: 157
23018266 CCTAGTCTAA
* * * * *
23018276 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCGGACTGAGGGTTGCGGCAGCAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACTGGACAGAGGGTTACGGTAGCAGGATCGAT
* * * * * *
23018340 AGCACACT-GGGGGGATCGGGCCGA-TCCCCATCTTACATATTCTACCTCTTCGATCGGATGAGC
65 AGCAC-GTAGGGGGGA-CGGGTCGATTCCCGA-CTTGCACATTCTACCTCTTCGATCGGTTGAGC
* *
23018403 ACCCGCACGCCCGTTTTATGGGTTGGCTTAG
127 ACCCGCACGCTCATTTTATGGGTTGGCTTAG
* * * ** * * * *
23018434 GCGTAGGGAGTTCATTCCATGCCTAAGGCCCAA-TCGGACAGAGGGTTATGGTAGC-GAGACCAA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAAACT-GGACAGAGGGTTACGGTAGCAG-GATCGA
* * * ** * * * *
23018497 CAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGTGCATTATAACTCTCCGACCGGCTT-AG
64 TAGCACGTAG-GGGGGA-CGGGTCGATTCCCGACTTGCACATTCTACCTCTTCGATCGG-TTGAG
* * * ** *
23018561 CTCTCGGACGCTCATTTCGTGGGTTGACTTAG
126 CACCCGCACGCTCATTTTATGGGTTGGCTTAG
* * ** *
23018593 GCATACGAAGTTCATTCCAAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAAACTGGACAGAGGGTTACGGTAGCAGGATCGATA
* * * * *
23018658 GCACGTAGGGGGGACAAGGTCAATTCTCGACTTGCACATTCTGCCTCTTCGGTCGGTTGAGCACC
66 GCACGTAGGGGGGAC-GGGTCGATTCCCGACTTGCACATTCTACCTCTTCGATCGGTTGAGCACC
* *
23018723 CGCATGCTCTTTTTATGGGTTGGCTTAG
130 CGCACGCTCATTTTATGGGTTGGCTTAG
23018751 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
23018778 CATACGGAGT
Statistics
Matches: 258, Mismatches: 75, Indels: 22
0.73 0.21 0.06
Matches are distributed among these distances:
157 8 0.03
158 132 0.51
159 112 0.43
160 6 0.02
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACTGGACAGAGGGTTACGGTAGCAGGATCGATA
GCACGTAGGGGGGACGGGTCGATTCCCGACTTGCACATTCTACCTCTTCGATCGGTTGAGCACCC
GCACGCTCATTTTATGGGTTGGCTTAG
Found at i:23018803 original size:26 final size:26
Alignment explanation
Indices: 23018751--23018803 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23018741 GTTGGCTTAG
*
23018751 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
23018777 GCATACGGAGTTCATTCCCA-GTATAA
1 GCATACGGAGTTCATT-CCATGTATAA
23018803 G
1 G
23018804 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:23019375 original size:871 final size:859
Alignment explanation
Indices: 23017527--23020485 Score: 2965
Period size: 871 Copynumber: 3.4 Consensus size: 859
23017517 GGCTCGACAC
23017527 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCA
1 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCA
* * * * ** *
23017592 GACCAAGGGTTGGGGCAGTGGGACCGGCAGCACGCAGAGGGGGACTGGGCCGATCCCCGACTT-T
66 GACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGT
* * * ** * * *
23017656 CGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTTGTTTCATGGCTTAACTTAGGCATAC
131 -GCATTATGCCTCTTCGACCGGCTTAGCTCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
* * **
23017721 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
195 GAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGC
* * * ** * *
23017786 AGGGGGGACTGGGCTAACCCTTGCTTGTGCATTCTGCCTCTCCATCCGGCTGAGCGCCCGCACGT
260 AGGGGGGAC-GGTC-AA--CTCGCTTG-CCATTCTGCCTCTCGGT-CGGTTGAGC-CCCGCACGC
* * * * *
23017851 TCGTTTCGTGGGTTGGCTTCGGTATATGGAGTTCATTACATGTCTAAGCATACGGAGTTCATTCC
318 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
* * * ** * * **
23017916 CAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGACCAGCA-CAGGATCGATAGCATAC
383 CAGTCTAAGATCGGATCGGACTGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATTGACAGCACGC
* * ** * **
23017980 AGGGGGGAT-CGGGTGGATCCCTGACTTACGCATTTTGGCTCTCCGATCGGCTGAGTGCCTACAC
448 AGGGGGG-TCCGGGTCGATCCCTGACTTACGCATTCT-GCTCTCCGGCCGGTTGAGTGCCCGCAC
*
23018044 GCTCATTTCGTTGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGA
511 GCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCC-G---GA
* * * * *
23018109 GGGTTGTGGCAGCAGAACCGGCAGC-AGGATCGGTAACATGCAGAGGGGGATCGGGCTGATCCTC
572 ----T-CGGCAGGAGGACCGGCAGCGA-GATCGATAGCATGCAGAGGGGGATCGGGCTGATCC-C
* * *
23018173 GACTTGCGCATTATGCCTCTCTGA-CTGGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTC
630 -ACCTGCGCATTATGCCTCTC-GATC-GGCCTCTCCGACCGGCTGAGCACCCGTACGCTCGTTTC
23018237 GTGGGTTGACTTAGGCATACGAAGTTCAT--CCTAGTCTAAGCATACGGAGTTCATTCCCAGTCT
692 GTGGGTTGACTTAGGCATACGAAGTTCATCCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * *
23018300 AAGATCAAACCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACACTGGGGGGATCGGGCCGAT
757 AAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACACAGGGGGGATC-GGCCAAT
** * * * *
23018365 CCCCATCTTACATATTCTACCTCTTCGATCGGATGAGCAC
821 CCCCGGCTTACGTATTCTACCTCTCCGACCGGATGAGC-G
** * * * * *
23018405 CCGCACGCCCGTTTTATGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGCCTAAGGCCCAATCG
1 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCA
* * * * * * * *
23018470 GACAGAGGGTTATGGTAGCGAGACCAACAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGT
66 GACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGT
** * * *
23018535 GCATTATAACTCTCCGACCGGCTTAGCTCTCGGACGCTCATTTCGTGGGTTGACTTAGGCATACG
131 GCATTATGCCTCTTCGACCGGCTTAGCTCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
* * * * * *
23018600 AAGTTCATTCCAAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCAGGATCGATAGCACGTA
196 AAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCA
*
23018665 GGGGGGACAAGGTCAATTCTCGACTTGCACATTCTGCCTCTTCGGTCGGTTGAGCACCCGCATGC
261 GGGGGGAC--GGTCAA--CTCG-CTTGC-CATTCTGCCTC-TCGGTCGGTTGAGC-CCCGCACGC
* *
23018730 TCTTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
318 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
* * * * * * *
23018795 CAGTATAAGATTGGATCGGGCTGAAGGTTACGGTAGCGGGACCAGCAGTAGGATTGACAGCACGC
383 CAGTCTAAGATCGGATCGGACTGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATTGACAGCACGC
* * * * *
23018860 AGGGGGGTCCGAGTTGATCCCTGGCTTACGCATTCTACTTCTCTGGCCGGTTGAGTGCCCGCACG
448 AGGGGGGTCCGGGTCGATCCCTGACTTACGCATTCTGC-TCTCCGGCCGGTTGAGTGCCCGCACG
* * * * **
23018925 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCACTGCATGTCTAAGCCCCAGTTGGATCGGC
512 CTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGGC
* * * * *
23018990 AGGAGGACCGACAGCGAGATCAATAGTACGCAGA-GGGGATCGAGCTGATCCCAAGCCTGCGCAT
577 AGGAGGACCGGCAGCGAGATCGATAGCATGCAGAGGGGGATCGGGCTGATCCC-A-CCTGCGCAT
* * * * *
23019054 TATGCCTCTTCGATCGGCCTCTCCGACCGGCTCAACCCCCGTAAGCTCGTTTCATGGGTTGACTT
640 TATGCCTC-TCGATCGGCCTCTCCGACCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTT
* * * * * * * * *
23019119 AGGCATACGGAGTTCGTCCCCTA-TTTAAGCATACAGAGTGCATTCCTAATTTAAGATCGGACCG
704 AGGCATACGAAGTTCATCCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * *
23019183 AAATGAGGGTGGCGGTAGTAGGATCGGTAGCACACAGGGGGGATCAGGCCAATCCCCGGCTTACG
769 GACTGAGGGTTGCGGCAGCAGGATCGGTAGCACACAGGGGGGATC-GGCCAATCCCCGGCTTACG
** * * *
23019248 TATTCTGGCTCTCCGGCCGGTTGAGTG
833 TATTCTACCTCTCCGACCGGATGAGCG
* *
23019275 CCAGCACGTCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
1 CC-GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* ** *
23019340 GGACCGAGGGTTGTGGCAGCGGGACCGGTAGCACGTAGAGGGGGACCAGGCCGATCCCCGGCTTG
65 AGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTG
* * * * *
23019405 CGCATTATGCCTCTTCAACCGG-TTCAG-TGCCCGCATGCTCGTTTCGTGGGTTGACTTATGCAT
130 TGCATTATGCCTCTTCGACCGGCTT-AGCT-CCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
* * * * *
23019468 TCAAAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTAAGGCAGCAAGATCGACAGCAC
193 ACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCAC
* * *
23019533 GCA---GGG--GGT-GA-TCG--GGCC-GT-T-CC-CT-GG-C--TT--G---CGCACGCTCGTT
258 GCAGGGGGGACGGTCAACTCGCTTGCCATTCTGCCTCTCGGTCGGTTGAGCCCCGCACGCTCGTT
* *
23019576 TCATGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGGGTTCATTCCCAGTC
323 TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTC
* * *
23019641 TAAGATCGGATCGGATTGAGGGTTGCGGTAGCAGGACTAGCAGCAGGA-TCAGCAGCACGCAGGG
388 TAAGATCGGATCGGACTGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATTGA-CAGCACGCAGGG
* *
23019705 GGGACCGGGTCGAT-CCTCGACTTGCGCATTCTGCCTCTCCGGCCGGTTGAGTGCCCGCACGCTC
452 GGGTCCGGGTCGATCCCT-GACTTACGCATTCTG-CTCTCCGGCCGGTTGAGTGCCCGCACGCTC
* *
23019769 ATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGC
515 ATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGATC---GGC
* * * * * *
23019834 TGTGGCGGCAGGACAGGTAGCGGGATCGACAGCATGCAGAGGGGGACCGGGCTGAT--C-CCTG-
577 -----AGG-AGGACCGGCAGCGAGATCGATAGCATGCAGAGGGGGATCGGGCTGATCCCACCTGC
* * * *
23019895 GC--T-TGCGC-ATC-AT--GCCTCTCCGGCTGGCTGAGCACCCGTACTCTCGTTTCGTGGGTTG
636 GCATTATGC-CTCTCGATCGGCCTCTCCGACCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTG
* * *
23019953 ACTTAGGCATACGAAGTTCATCCCC-AGTCTAAGAATACGGACTTCTTTCCCAGTCTAAGATCAG
700 ACTTAGGCATACGAAGTTCATCCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * **
23020017 ACCGGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGTAGGGGGGATCGAGCCAATCCCCGGCT
765 ACCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACACAGGGGGGATCG-GCCAATCCCCGGCT
** * * * *
23020082 TGTGCATTTTACCTATCCGACCGGCTGAGCG
829 TACGTATTCTACCTCTCCGACCGGATGAGCG
* *
23020113 CTCGCACACCCGTTTCGTTGGTTGGCTTAGGCATAGGG-GTTCATTCCATGTCTAAGCCCCAGTC
1 C-CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * * * * *
23020177 AGACCGAGGGTTGTGGCA-CTGGGACCGACAGCACGCAAAAGGGGATCAGGTCGATCCTCAGCTT
65 AGACCGAGGGTTGTGGCAGC-GGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTT
* * * * *
23020241 GTGCATTATGCCTTTTCGGCCAGCTTAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATA
129 GTGCATTATGCCTCTTCGACCGGCTTAGCTCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
* * * * *
23020306 CGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATTGACAGCACG
194 CGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACG
* * * * * * *** * * ** *
23020371 CAGGGGGGACCGGGCTGATCCCCGGCTTACGCATTCTACCTCTCCGGCCGACGGGGGCTTGTACG
259 CAGGGGGGA-C-GG-TCA-ACTC-GCTTGC-CATTCTGCCTCT-CGGTCGGTTGAGCCCCGCACG
23020436 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
317 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
23020486 CCCAGTCGGA
Statistics
Matches: 1704, Mismatches: 311, Indels: 144
0.79 0.14 0.07
Matches are distributed among these distances:
836 1 0.00
837 188 0.11
838 195 0.11
839 1 0.00
840 10 0.01
841 227 0.13
842 4 0.00
843 2 0.00
844 5 0.00
845 4 0.00
846 4 0.00
847 2 0.00
848 1 0.00
849 5 0.00
850 25 0.01
851 15 0.01
852 2 0.00
853 3 0.00
854 2 0.00
855 3 0.00
856 3 0.00
857 2 0.00
858 2 0.00
859 1 0.00
860 3 0.00
863 2 0.00
864 3 0.00
866 53 0.03
868 3 0.00
869 2 0.00
870 98 0.06
871 351 0.21
872 6 0.00
876 2 0.00
878 228 0.13
879 131 0.08
880 115 0.07
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (859 bp):
CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCA
GACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGT
GCATTATGCCTCTTCGACCGGCTTAGCTCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
AAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCA
GGGGGGACGGTCAACTCGCTTGCCATTCTGCCTCTCGGTCGGTTGAGCCCCGCACGCTCGTTTCA
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCGGATCGGACTGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATTGACAGCACGCAGGGGGGT
CCGGGTCGATCCCTGACTTACGCATTCTGCTCTCCGGCCGGTTGAGTGCCCGCACGCTCATTTCG
TGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGGCAGGAGGACC
GGCAGCGAGATCGATAGCATGCAGAGGGGGATCGGGCTGATCCCACCTGCGCATTATGCCTCTCG
ATCGGCCTCTCCGACCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAG
TTCATCCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTG
CGGCAGCAGGATCGGTAGCACACAGGGGGGATCGGCCAATCCCCGGCTTACGTATTCTACCTCTC
CGACCGGATGAGCG
Found at i:23019622 original size:26 final size:26
Alignment explanation
Indices: 23019592--23019644 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23019582 CTTGGCTTAG
23019592 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
23019618 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23019644 G
1 G
23019645 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23020419 original size:158 final size:157
Alignment explanation
Indices: 23019987--23020419 Score: 388
Period size: 158 Copynumber: 2.7 Consensus size: 157
23019977 CAGTCTAAGA
* * * *
23019987 ATACGGACTTCTTTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGGCAGC
1 ATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGC
* * ** * * * * *
23020052 ACGTAGGGGGGATCGAGCCAATCCCCGGCTTGTGCATTTTACCTATCCGACCGGCTGAGCGCTCG
65 ACGCAGGGGGGATCGGGCTGATCCCCGGCTTGTGCATTATACCTATCCGGCCAGCTGAGCACCCG
* * *
23020117 CACACCCGTTTCGTTGGTTGGCTTAGGC
130 CACACCCATTTCGTGGGTTGACTTAGGC
* ** * * * * *
23020145 ATA-GGGGTTCATTCCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCA-CTGGGACCGACA
1 ATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGC-AGGATCGACA
** * * * * * * *
23020207 GCACGCAAAAGGGGATCAGG-TCGATCCTCAGCTTGTGCATTATGCCTTTTCGGCCAGCTTAGCA
63 GCACGC-AGGGGGGATCGGGCT-GATCCCCGGCTTGTGCATTATACCTATCCGGCCAGCTGAGCA
* * *
23020271 CCCGCACGCTCATTTTGTGGGTTGACTTAGGC
126 CCCGCACACCCATTTCGTGGGTTGACTTAGGC
* *
23020303 ATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATTGACAGC
1 ATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGC
* ** * *
23020368 ACGCAGGGGGGACCGGGCTGATCCCCGGCTTACGCATTCTACCTCTCCGGCC
65 ACGCAGGGGGGATCGGGCTGATCCCCGGCTTGTGCATTATACCTATCCGGCC
23020420 GACGGGGGCT
Statistics
Matches: 207, Mismatches: 58, Indels: 20
0.73 0.20 0.07
Matches are distributed among these distances:
156 4 0.02
157 42 0.20
158 111 0.54
159 48 0.23
160 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
ATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
CGCAGGGGGGATCGGGCTGATCCCCGGCTTGTGCATTATACCTATCCGGCCAGCTGAGCACCCGC
ACACCCATTTCGTGGGTTGACTTAGGC
Found at i:23020596 original size:13 final size:13
Alignment explanation
Indices: 23020578--23020604 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
23020568 TACGGATTAT
23020578 GCCTCTCCGATCG
1 GCCTCTCCGATCG
23020591 GCCTCTCCGATCG
1 GCCTCTCCGATCG
23020604 G
1 G
23020605 TTGAACGTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.44, G:0.26, T:0.22
Consensus pattern (13 bp):
GCCTCTCCGATCG
Found at i:23021421 original size:55 final size:55
Alignment explanation
Indices: 23021354--23021462 Score: 155
Period size: 55 Copynumber: 2.0 Consensus size: 55
23021344 ACTGTAGCAC
* * * *
23021354 ACCAGTCGCCCGCACGCAAGGTTGACACCAACCTTTATGCTAGTCCCGCAAGGGG
1 ACCAGTCACCCGCACGCAAGGTTGACACCAACCATCATGCTAGCCCCGCAAGGGG
** *
23021409 ACCAGTCACCCGCATTCATGGTTGACACCAACCATCATGCTAGCCCCGCAAGGG
1 ACCAGTCACCCGCACGCAAGGTTGACACCAACCATCATGCTAGCCCCGCAAGGG
23021463 ACATGGGTGG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 47 1.00
ACGTcount: A:0.25, C:0.36, G:0.23, T:0.17
Consensus pattern (55 bp):
ACCAGTCACCCGCACGCAAGGTTGACACCAACCATCATGCTAGCCCCGCAAGGGG
Found at i:23023539 original size:24 final size:24
Alignment explanation
Indices: 23023512--23023566 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
23023502 TCGTGATCTT
23023512 CTGACCACAAG-AACTCACGGTCCA
1 CTGACCA-AAGCAACTCACGGTCCA
* * *
23023536 CTGACCAACGCAGCTCATGGTCCA
1 CTGACCAAAGCAACTCACGGTCCA
23023560 CTGACCA
1 CTGACCA
23023567 TCTCGCTTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 2 0.07
24 25 0.93
ACGTcount: A:0.29, C:0.38, G:0.18, T:0.15
Consensus pattern (24 bp):
CTGACCAAAGCAACTCACGGTCCA
Found at i:23026250 original size:26 final size:26
Alignment explanation
Indices: 23026220--23026324 Score: 147
Period size: 26 Copynumber: 4.0 Consensus size: 26
23026210 GTTGACTTAG
23026220 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
23026246 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
23026272 GCGTATGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23026298 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23026324 G
1 G
23026325 ATCGGACCGG
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 66 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23026289 original size:52 final size:52
Alignment explanation
Indices: 23026226--23026324 Score: 171
Period size: 52 Copynumber: 1.9 Consensus size: 52
23026216 TTAGGCATAC
*
23026226 GGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGCGTAT
1 GGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGCGTAT
* *
23026278 GGAGTTTATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
1 GGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG
23026325 ATCGGACCGG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (52 bp):
GGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGCGTAT
Found at i:23026783 original size:26 final size:26
Alignment explanation
Indices: 23026754--23026832 Score: 117
Period size: 26 Copynumber: 3.0 Consensus size: 26
23026744 GTTGGCTTAG
23026754 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
23026780 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
23026806 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
23026832 G
1 G
23026833 ATCGGATTGG
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
26 46 0.94
27 3 0.06
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:23027015 original size:26 final size:26
Alignment explanation
Indices: 23026985--23027037 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23026975 GTTGACTTAG
23026985 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
23027011 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
23027037 G
1 G
23027038 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:23027449 original size:26 final size:26
Alignment explanation
Indices: 23027407--23027496 Score: 117
Period size: 26 Copynumber: 3.4 Consensus size: 26
23027397 CAACAGGATC
23027407 CCCAGTCTAAGCATACAGAGTTCATT
1 CCCAGTCTAAGCATACAGAGTTCATT
* * * * *
23027433 CTCAGTCTAAACGTACAAGAGTTTATC
1 CCCAGTCTAAGCATAC-AGAGTTCATT
*
23027460 CCCAGTCTAAGCATACGGAGTTCATT
1 CCCAGTCTAAGCATACAGAGTTCATT
23027486 CCCAGTCTAAG
1 CCCAGTCTAAG
23027497 ATCGGACCGG
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
26 31 0.60
27 21 0.40
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CCCAGTCTAAGCATACAGAGTTCATT
Found at i:23027965 original size:26 final size:26
Alignment explanation
Indices: 23027929--23027978 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
23027919 GACTTAGGCA
23027929 TACGGAGTTCATCCCCAGTCTAAGCT
1 TACGGAGTTCATCCCCAGTCTAAGCT
*
23027955 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
23027979 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCT
Found at i:23028424 original size:26 final size:25
Alignment explanation
Indices: 23028394--23028444 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 25
23028384 GTTGGCTTAG
23028394 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
23028420 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
23028445 AATGGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:23029183 original size:159 final size:158
Alignment explanation
Indices: 23028804--23029296 Score: 404
Period size: 159 Copynumber: 3.1 Consensus size: 158
23028794 AAGCATACGG
* * * *
23028804 AGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTACGGTAGCAGGATCGGTAG-CACA-T
1 AGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGATCGATAGACGCAGT
* * *
23028867 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCACACGC
66 A-GGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTCAGCGCCCACACGC
** ***
23028932 CCATTTCATCGGTTGGCTTAGGCATAGGG
130 CCATTTCATCGGTTAACTTAGGCATACAA
** ** * * * * * *
23028961 AGTTCATT-CCATGTCTAAGCCCCAACCGGATCGAGGGCTGTGGTAACGGGAAT-GACAGCACGC
1 AGTTCATTCCCA-GTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGG-ATCGATAG-ACGC
* ** ** * *
23029024 AGTAAGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGTTCAGCGCCCGCAT
63 AGTAGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTCAGCGCCCACAC
* *
23029089 GCTCATTTCATGGGTTAACTTAGGCATACAA
128 GCCCATTTCATCGGTTAACTTAGGCATACAA
* * * *
23029120 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCAAGATCGATAGAACGCAG
1 AGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGATCGATAG-ACGCAG
* * ** * * * * **
23029185 -AGGGGACCGGGTCGATCCCC-AGTTTGTACATTTTACCTCTCCGACCGACTGAGCACCCGGACG
65 TAGGGGACCGGGCCGATCCCCGA-CTTGCGCATTATGCCTCTCCGACCGACTCAGCGCCCACACG
* * * ** **
23029248 CTCATTTCGTGGGTTGGCTTAGGCATACGG
129 CCCATTTCATCGGTTAACTTAGGCATACAA
**
23029278 AGTTCATTCCGTGTCTAAG
1 AGTTCATTCCCAGTCTAAG
23029297 CCTCAGCCGG
Statistics
Matches: 260, Mismatches: 68, Indels: 15
0.76 0.20 0.04
Matches are distributed among these distances:
156 3 0.01
157 39 0.15
158 92 0.35
159 121 0.47
160 5 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGATCGATAGACGCAGT
AGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTCAGCGCCCACACGCC
CATTTCATCGGTTAACTTAGGCATACAA
Found at i:23029317 original size:158 final size:158
Alignment explanation
Indices: 23028869--23029317 Score: 447
Period size: 159 Copynumber: 2.8 Consensus size: 158
23028859 TAGCACATAG
* * *
23028869 GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCACACGCCC
1 GGGGACCGGGCCGATCCCC-GCTTGCGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTC
* * * * * *
23028934 ATTTCATCGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGC
65 ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAGCCGGACCGAGGGT
** * ** *
23028999 TGTGGTAACGGGAATGACAGCACGCAGTA
130 TGCAGCAACAAGAATGACAGAACGCAGTA
* ** ** * *
23029028 AGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGTTCAGCGCCCGCATGCTC
1 GGGGACCGGGCCGATCCCCG-CTTGCGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTC
** ** * * *
23029093 ATTTCATGGGTTAACTTAGGCATACAAAGTTCATTCCCA-GTCTAAG-ATCGGATCGGACCGAGG
65 ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCTCAG-CCGGACCGAGG
* *
23029156 GTTGCAGCAGCAAG-ATCGATAGAACGCAG-A
128 GTTGCAGCAACAAGAAT-GACAGAACGCAGTA
* * ** * * * *
23029186 GGGGACCGGGTCGATCCCCAGTTTGTACATTTTACCTCTCCGACCGACTGAGCACCCGGACGCTC
1 GGGGACCGGGCCGATCCCC-GCTTGCGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTC
* *
23029251 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCGTGTCTAAGCCTCAGCCGGACCGAGGGT
65 ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAGCCGGACCGAGGGT
23029316 TG
130 TG
23029318 TGATAGCAGG
Statistics
Matches: 228, Mismatches: 55, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 104 0.46
159 119 0.52
160 3 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (158 bp):
GGGGACCGGGCCGATCCCCGCTTGCGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTCA
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAGCCGGACCGAGGGTT
GCAGCAACAAGAATGACAGAACGCAGTA
Found at i:23029484 original size:26 final size:26
Alignment explanation
Indices: 23029454--23029506 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23029444 GTTGACTTAG
23029454 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
23029480 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23029506 G
1 G
23029507 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23029874 original size:27 final size:26
Alignment explanation
Indices: 23029816--23029875 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
23029806 TAGGCACACG
* *
23029816 GAGTTCATCCCCAGTCTAAGCATACG
1 GAGTTCATCCCCAGTCTAAGCAGACC
*
23029842 GAGTTCATTCCCAGTCTAAGATCAGACC
1 GAGTTCATCCCCAGTCTAAG--CAGACC
23029870 G-GTTCA
1 GAGTTCA
23029876 AGGGTTGCGG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 19 0.66
27 5 0.17
28 5 0.17
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (26 bp):
GAGTTCATCCCCAGTCTAAGCAGACC
Found at i:23029896 original size:355 final size:355
Alignment explanation
Indices: 23029120--23030081 Score: 1060
Period size: 355 Copynumber: 2.7 Consensus size: 355
23029110 AGGCATACAA
** * *
23029120 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCAAGATCGATAGAACGCAG
1 AGTTCATTCCCAGTCTAAGATCGGATCGGTTCGAGGGTTGCGGCAGCAGGATCGATAGAACGCAG
* ** * ** * * *
23029185 AGGGGACCGGGTCGATCCCCAGTTTGTACATTTTACCTCTCCGACCGACTGAGCACCCGGACGCT
66 GGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGAACGCT
* * *
23029250 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCGTGTCTAAGCCTCAGCCGGACCGAGGG
131 C-GTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
* * * **
23029315 TTGTGATAGCAGGACCGACAGTGGGATCGGCAGCATGCAAAGGGGGACCAAGCTGATCCGCGGCT
195 TTGTG---GCA-G--C-A-A----GATCGACAGCATGCAGAGGGGGATCGGGCTGATCCGCGGCT
* * * * *
23029380 TAGACATTATGGCTCTCCATCCGACCTCTTCGGCCGACTAAGCTCCCGTACACTCGTTTCATGGG
248 TAGACATTATGCCTCTCCATCCGACCTCTTCGACCGACTAAGCGCCCGCACACTCATTTCATGGG
*
23029445 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
313 TTGACTTAGGCACACGGAGTTCATCCCCAGTCTAAGCATACGG
* * * * * *
23029488 TGTTCATTCCCAGTCTAAGATCGGATTGGATT-GAGGGTTACGACAGTAGGATCGATAGCACGCA
1 AGTTCATTCCCAGTCTAAGATCGGATCGG-TTCGAGGGTTGCGGCAGCAGGATCGATAGAACGCA
* * *
23029552 GGGGGGACCGAG-CTGATCCCTGGCTTGCGCATTCTGCCTCTCCAACCGACTTAGCACCCGAACG
65 GGGGGGACCGGGTC-GATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGAACG
* *
23029616 CATCGTTCGTGGGTTGGCTTAGCCATACGGAGTTCATTCCATCTCTAAGCCCCAGCCGGACCGAG
129 C-TCGTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAG
* * *
23029681 GGTTGTGG-AGTAAGACCGACAGCATGCAGAGGGGGATCGGGCTGATCC-CTGG-TTTGCACATT
193 GGTTGTGGCAGCAAGATCGACAGCATGCAGAGGGGGATCGGGCTGATCCGC-GGCTTAG-ACATT
* * * *
23029743 ATGCCTCTCCGAT-CGACCTTTTCGATCGACTGAA-CGCCCGCACGCTCATTTCGTGGGTTGACT
256 ATGCCTCTCC-ATCCGACCTCTTCGACCGACT-AAGCGCCCGCACACTCATTTCATGGGTTGACT
23029806 TAGGCACACGGAGTTCATCCCCAGTCTAAGCATACGG
319 TAGGCACACGGAGTTCATCCCCAGTCTAAGCATACGG
* * * * * * *
23029843 AGTTCATTCCCAGTCTAAGATCAGACCGGTTCAAGGGTTGCGGTAGCAGGATCGGTTGTACGCAG
1 AGTTCATTCCCAGTCTAAGATCGGATCGGTTCGAGGGTTGCGGCAGCAGGATCGATAGAACGCAG
* * * * * * *
23029908 GGGGGACGGGGTCGAT-CCTCGGCTTACGCATTCTGCCTCTCGGGCCGGCTGAGCGCCCGCACGC
66 GGGGGACCGGGTCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGAACGC
* * * *
23029972 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGG
130 TCG-TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
** *
23030037 GTTGTGGCAGCGGGATCGACAGCACGCAGCA-GGGGATCGGGCTGA
194 GTTGTGGCAGCAAGATCGACAGCATGCAG-AGGGGGATCGGGCTGA
23030082 ACCCCGAATT
Statistics
Matches: 503, Mismatches: 78, Indels: 38
0.81 0.13 0.06
Matches are distributed among these distances:
354 11 0.02
355 281 0.56
356 35 0.07
357 1 0.00
359 1 0.00
360 1 0.00
363 1 0.00
364 1 0.00
365 1 0.00
367 1 0.00
368 167 0.33
369 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (355 bp):
AGTTCATTCCCAGTCTAAGATCGGATCGGTTCGAGGGTTGCGGCAGCAGGATCGATAGAACGCAG
GGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGAACGCT
CGTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGT
TGTGGCAGCAAGATCGACAGCATGCAGAGGGGGATCGGGCTGATCCGCGGCTTAGACATTATGCC
TCTCCATCCGACCTCTTCGACCGACTAAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCAC
ACGGAGTTCATCCCCAGTCTAAGCATACGG
Found at i:23033061 original size:27 final size:27
Alignment explanation
Indices: 23033031--23033082 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
23033021 GTTGACTTAG
23033031 GCATACAGAGTTCA-TCCCCAAGTCTAA
1 GCATACAGAGTTCATTCCCC-AGTCTAA
*
23033058 GCATACGGAGTTCATTCCCCAGTCT
1 GCATACAGAGTTCATTCCCCAGTCT
23033083 CAAGATTGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (27 bp):
GCATACAGAGTTCATTCCCCAGTCTAA
Found at i:23033569 original size:26 final size:26
Alignment explanation
Indices: 23033532--23033584 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23033522 GTTGGCTTAG
23033532 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
*
23033558 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
23033584 G
1 G
23033585 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:23037565 original size:158 final size:156
Alignment explanation
Indices: 23037247--23037747 Score: 423
Period size: 158 Copynumber: 3.2 Consensus size: 156
23037237 CTCCTTATGG
23037247 TTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
1 TTAGACATGGAATGAACT-CGTATGCCTAAGCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
** *
23037312 GTCAGAGAGGTAGAATACGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGAGCTGTCGATCCTGC
65 GTCAGAGAGACAGAATACGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGAGCTGTCGATCCCGC
** *
23037377 TACCGTAACCCTCGGTTCGATCCGATC
130 TACCACAACCCTCGGTTCGATCCGAGC
* * * * *
23037404 TTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGTTGAGC
1 TTAGACAT-GGAATGAACTC-GTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* ** *
23037468 CGG-C-GAAGAGACATAATGTGCAAGTCGGGGATC-AGCCCGGTCCCCCTCTGC-ATGCTGTCGG
63 CGGTCAG-AGAGACAGAATACGCAAGTCGGGGATCGA-CCCGGTCCCCC-CTGCGA-GCTGTCGA
* * ** *
23037529 TCCCGCTGCCACAACCCTCGG-TCTGTTGGGGGC
124 TCCCGCTACCACAACCCTCGGTTC-GATCCGAGC
* * **
23037562 TTAGACATGGAATGAACATCCTATGCCTAAGCCAACCCATGAAACGGGCCGTGCGACTCGCTCAG
1 TTAGACATGGAATGAAC-TCGTATGCCTAAG-CAACCCATGAAACGAG-CGTGCG-GGCGCTCAG
* * * * * * *
23037627 CCGG-CCGAAGAGGCAGAATGC-CAAAG-CTGGGGATC-AGCTCGATCCCCCCTGCGTGCTGCCG
62 CCGGTCAG-AGAGACAGAATACGC-AAGTC-GGGGATCGA-CCCGGTCCCCCCTGCGAGCTGTCG
* * * *
23037688 ATCCTG-TCACCGCAACCCTCGATTCGATCCGATC
123 ATCCCGCT-ACCACAACCCTCGGTTCGATCCGAGC
23037722 TTAGAC-TGGGAATGAACTCTGTATGC
1 TTAGACAT-GGAATGAACTC-GTATGC
23037748 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 48, Indels: 37
0.76 0.13 0.10
Matches are distributed among these distances:
156 4 0.01
157 63 0.23
158 101 0.37
159 13 0.05
160 60 0.22
161 35 0.13
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
TTAGACATGGAATGAACTCGTATGCCTAAGCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGG
TCAGAGAGACAGAATACGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGAGCTGTCGATCCCGCT
ACCACAACCCTCGGTTCGATCCGAGC
Found at i:23037757 original size:26 final size:26
Alignment explanation
Indices: 23037721--23037773 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23037711 TCGATCCGAT
*
23037721 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23037747 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23037773 C
1 C
23037774 CAAGTCAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23038150 original size:26 final size:26
Alignment explanation
Indices: 23038113--23038164 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23038103 CGGTCTGATT
*
23038113 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
23038139 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
23038165 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:23038501 original size:159 final size:157
Alignment explanation
Indices: 23038137--23038639 Score: 480
Period size: 158 Copynumber: 3.2 Consensus size: 157
23038127 AACTTCGTAT
*
23038137 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
* * * * *
23038202 CCAGTCGGAGAGGCAGAATACGCAAGCTGGGGATCGACCTGGTCCCCCT-TATGTGCTATCGATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCTGCA--TGCTGTCGATC
** * * ** *
23038266 TTGCTGTCACAACCCTCGGTGTGATCTGA
129 CCGCTGCCACAACCCTCGATCCGAGCTGA
* * * * * * ** *
23038295 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGTGTGTGCGAGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCA
*
23038359 GCCGGTCGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGGTCCTCCGCTGCATGCTGTCGAT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCC-CC-CTGCATGCTGTCGAT
* *
23038424 CCCGCTGCCATAACCCTCGATCCG-GCTGGG
128 CCCGCTGCCACAACCCTCGATCCGAGCT-GA
* * * *
23038454 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCCATGAAACGGGCGTGC-AGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGA-GCGCTCA
* * * * *
23038518 ACCGGCCAGAGAGGCAGAATGCGCAAG-TCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGAT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGACCCGGT-CCCCCTGCATGCTGTCGAT
* * * * **
23038582 CCTGCTACCGCAACCCTCGGTCC-AGTCCAA
128 CCCGCTGCCACAACCCTCGATCCGAG-CTGA
* *
23038612 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
23038640 TTAGACTGGG
Statistics
Matches: 279, Mismatches: 54, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
157 2 0.01
158 154 0.55
159 117 0.42
160 5 0.02
161 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCTGCATGCTGTCGATCCC
GCTGCCACAACCCTCGATCCGAGCTGA
Found at i:23038649 original size:26 final size:26
Alignment explanation
Indices: 23038613--23038665 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23038603 CCAGTCCAAT
23038613 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
23038639 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
23038665 C
1 C
23038666 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:23039716 original size:160 final size:156
Alignment explanation
Indices: 23039359--23039767 Score: 376
Period size: 160 Copynumber: 2.6 Consensus size: 156
23039349 AACTCCGTAT
*
23039359 GCTTAGAAATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGTTCAG
1 GCTTAG-AATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* * * * * *
23039424 CCAACCGGAGAGGCAGAATGTGCAAGCCGGGGACCAGTCCGGTCACCCTGCTTGCTGTCGATCCT
65 CCAACCGAAGAGGCAGAATGCGCAAGCCAGGGACCAGCCCGATCACCCTGCTTGCTGTCGATCCC
* *
23039489 GCTGCCGCAACCCTTGGTTCGGTCTGA
130 GCTACCACAACCCTTGGTTCGGTCTGA
* * * * * *
23039516 TCTTAGAATGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAATGAGTGTACGGGGCGCTGA
1 GCTTAGAAT-GGAATGAACTTCATATGCCTAAGCCAACCCACGAAATGAGCGTAC-GGGCGCTCA
*** * ** ** *
23039581 GCCGGTCGAAGAGGCATAATGCGCAATTCAGGGTTCGGCCCGATC-CCCTGCTGCGTGCTGTCGA
64 GCCAACCGAAGAGGCAGAATGCGCAAGCCAGGGACCAGCCCGATCACCCTGCT---TGCTGTCGA
* *
23039645 TCCCGCTACCACAGCCCTTGG-TCTGG-CTGGG
126 TCCCGCTACCACAACCCTTGGTTC-GGTCT-GA
* * * * * * *
23039676 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGAGCGCTCAG
1 GCTTAGA-ATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
** *
23039741 CCGGCCCG-AGAGGCAGAATGCGTAAGC
65 CC-AACCGAAGAGGCAGAATGCGCAAGC
23039768 TGAGGATCGA
Statistics
Matches: 199, Mismatches: 44, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
156 3 0.02
157 53 0.27
158 38 0.19
159 29 0.15
160 74 0.37
161 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.19
Consensus pattern (156 bp):
GCTTAGAATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
CAACCGAAGAGGCAGAATGCGCAAGCCAGGGACCAGCCCGATCACCCTGCTTGCTGTCGATCCCG
CTACCACAACCCTTGGTTCGGTCTGA
Found at i:23040440 original size:26 final size:25
Alignment explanation
Indices: 23040411--23040498 Score: 95
Period size: 26 Copynumber: 3.4 Consensus size: 25
23040401 CCGGTCCGAT
23040411 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
* * **
23040437 CTTAGACTGGGGATAAACTCCGTACA
1 CTTAGACT-GGAATGAACTCCGTATG
* *
23040463 TTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTG-GAATGAACTCCGTATG
23040489 CTTAGACTGG
1 CTTAGACTGG
23040499 GGATCCTGCT
Statistics
Matches: 49, Mismatches: 12, Indels: 3
0.77 0.19 0.05
Matches are distributed among these distances:
25 2 0.04
26 47 0.96
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:23040893 original size:26 final size:26
Alignment explanation
Indices: 23040857--23040909 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23040847 CCGGTCTGAT
23040857 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
23040883 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
23040909 C
1 C
23040910 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23041099 original size:26 final size:26
Alignment explanation
Indices: 23041062--23041140 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
23041052 CCAGTCCGAT
*
23041062 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23041088 TTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23041114 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23041140 C
1 C
23041141 CTAAGCCAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 48 0.98
27 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23041598 original size:26 final size:26
Alignment explanation
Indices: 23041569--23041673 Score: 131
Period size: 26 Copynumber: 4.0 Consensus size: 26
23041559 CCGGTCCGAT
*
23041569 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
23041595 CTTAGACTGGGGATAAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
23041621 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23041647 CTTAGACTATGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
23041673 C
1 C
23041674 CTAAGTCAAC
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 65 0.98
27 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23041647 original size:52 final size:52
Alignment explanation
Indices: 23041569--23041670 Score: 150
Period size: 52 Copynumber: 2.0 Consensus size: 52
23041559 CCGGTCCGAT
* * *
23041569 CTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCCGTACG
1 CTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGGATAAACTCCGTACG
* * *
23041621 CTTAGACTGAGAATGAACTCTGTATGCTTAGACTATGGATGAACTCCGTA
1 CTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGGATAAACTCCGTA
23041671 TGCCTAAGTC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (52 bp):
CTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGGATAAACTCCGTACG
Found at i:23046486 original size:55 final size:55
Alignment explanation
Indices: 23046424--23046532 Score: 182
Period size: 55 Copynumber: 2.0 Consensus size: 55
23046414 CCACCCAAGT
* *
23046424 CCCTTGCGGGACTAGCATGATGGTTGGTGTCAACCATGCATGCGGGCGACTGGTC
1 CCCTTGCGGGACTAGCATAAAGGTTGGTGTCAACCATGCATGCGGGCGACTGGTC
* *
23046479 CCCTTGCGGGACTAGCATAAAGGTTGGTGTCAACCTTGCGTGCGGGCGACTGGT
1 CCCTTGCGGGACTAGCATAAAGGTTGGTGTCAACCATGCATGCGGGCGACTGGT
23046533 GTGCTGCAGC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 50 1.00
ACGTcount: A:0.17, C:0.25, G:0.35, T:0.24
Consensus pattern (55 bp):
CCCTTGCGGGACTAGCATAAAGGTTGGTGTCAACCATGCATGCGGGCGACTGGTC
Found at i:23047300 original size:13 final size:13
Alignment explanation
Indices: 23047282--23047308 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
23047272 GGACGTTCAA
23047282 CCGATCGGAGAGG
1 CCGATCGGAGAGG
23047295 CCGATCGGAGAGG
1 CCGATCGGAGAGG
23047308 C
1 C
23047309 ATAATCCGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.26, G:0.44, T:0.07
Consensus pattern (13 bp):
CCGATCGGAGAGG
Found at i:23047924 original size:26 final size:26
Alignment explanation
Indices: 23047874--23047925 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
23047864 TCCGGTCTGA
*
23047874 TCTTAGACTGGGAAAGAAGTCCGTAT
1 TCTTAGACTGGGAAAGAACTCCGTAT
* * *
23047900 TCTTAGACTGGGGATGAACTTCGTAT
1 TCTTAGACTGGGAAAGAACTCCGTAT
23047926 GCCCTAAGTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGGAAAGAACTCCGTAT
Found at i:23048271 original size:26 final size:26
Alignment explanation
Indices: 23048242--23048294 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23048232 CCGATCCGAT
23048242 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
23048268 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23048294 C
1 C
23048295 CTAAGCCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23049443 original size:159 final size:158
Alignment explanation
Indices: 23049108--23049610 Score: 382
Period size: 158 Copynumber: 3.2 Consensus size: 158
23049098 AACTCCGTAT
* * * *
23049108 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAAGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAAGAGCGTCCGAGAGCTAAG
** * * **
23049173 CCGACCGAAGAGGCAGAATGTGCAAGTCGAGAATTGACCTTGTCCCCCCTACGTGCTGTCGATCC
66 CCGACCGAAGAGGCAGAATGCACAAGCCGAGAATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
**
23049238 TGCTACCGTAACCCTCGGTCCAGTCCGA
131 TGCTACCACAACCCTCGGTCCAGTCCGA
* * * * * *
23049266 TCTTAGACTTGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTCCGAGAGCTAAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAAGAGCGTCCGAGAGCTAAG
** * ** * * * * *
23049331 CCGGTCGGAGAGTTATAATGCACAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTGTTGGT-
66 CCGACCGAAGAGGCAGAATGCACAAGCCGAGAATCGACCCGGTCCCCC-CTACGTGCTGTCGATC
* * * *
23049395 CTCGCTACCACAACCCTCGGT-CTGGCTGGG
130 CT-GCTACCACAACCCTCGGTCCAGTC-CGA
* * * * * * * * * * *
23049425 GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATAAAACGGGCATGCGGGTGCTCAT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAAGAGCGTCCGAGAGCTAAG
** **** ** * * * * *
23049490 CCGGTCGAAGAGGCAGAATATGTAAGATGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCC
66 CCGACCGAAGAGGCAGAATGCACAAGCCGAGAATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
* * * * **
23049555 TGCTGCCGCAACCCTCAGTCCGGTTTGA
131 TGCTACCACAACCCTCGGTCCAGTCCGA
*
23049583 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
23049611 TTAGACTAGG
Statistics
Matches: 265, Mismatches: 74, Indels: 12
0.75 0.21 0.03
Matches are distributed among these distances:
157 1 0.00
158 144 0.54
159 120 0.45
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAAGAGCGTCCGAGAGCTAAG
CCGACCGAAGAGGCAGAATGCACAAGCCGAGAATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
TGCTACCACAACCCTCGGTCCAGTCCGA
Found at i:23049634 original size:25 final size:26
Alignment explanation
Indices: 23049584--23049635 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
23049574 CCGGTTTGAT
* *
23049584 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
23049610 CTTAGACTAGG-ATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
23049635 C
1 C
23049636 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:23049694 original size:13 final size:13
Alignment explanation
Indices: 23049676--23049704 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
23049666 CGCTCAGTCG
23049676 GTCGGAGAGGCCA
1 GTCGGAGAGGCCA
23049689 GTCGGAGAGGCCA
1 GTCGGAGAGGCCA
23049702 GTC
1 GTC
23049705 AGAAAGGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.21, C:0.24, G:0.45, T:0.10
Consensus pattern (13 bp):
GTCGGAGAGGCCA
Found at i:23050145 original size:892 final size:871
Alignment explanation
Indices: 23048349--23050375 Score: 2215
Period size: 892 Copynumber: 2.3 Consensus size: 871
23048339 TCGATCACCG
* * * * *
23048349 CCTGCGTGCTGTCGATCTTGCTGCCTTAACCGTCGATCCGATTCGATCTTAGACTGGGAATGAAC
1 CCTGCGTGCTGTCGATCCTGCTGCCATAACCCTCGGTCCG-TCCGATCTTAGACTGGGAATGAAC
* * * * * * *
23048414 TTTGAATGCATAAGTCAACCCATGAAACGAGCATGCGGGCA-CTGAA-CTAGTTGAAGAGGCATA
65 TTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG-AGCT-AAGCCAGTCGAAGAGGCATA
* * * *
23048477 ATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTACGTGCTACCGGTCCCGCTGCCACAACCCTC
128 ATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGGTCTCGCTGCCACAACCCTC
23048542 -GTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGT
193 GGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGT
* ** * * * * *
23048606 GCTGGCACTCAACCGGCCGGAGAGCCAGAATACGTAAGCCGGGGATTGGCCCGATCCCCCCTGTG
258 GCGGGTGCTCAACCGGCCGAAGAGCCAGAATACGTAAGACGGGGATCGACCCGATCCCCCCTGCG
* * * * *
23048671 TGCTACCGATCCTACTGCCGCCACCCTCGTTTCGGTCCGATCTTAAATTGGGAATGCACTCTGTA
323 TGCTACCGATCCTACTGCCGCAACCCTCGTTCCGGTCCGATCTTAAACTGGGAATGAACTCCGTA
* * ** **
23048736 TGCTTAGATCGGGGACGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCTTACGGGGGTTGA
388 TGCTTAGATCGAGGACGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCTTACGGGGGGAGA
* * * * *
23048801 GCCGGTCGGAGAGGCCGATCGAAGAGGCATAATGCGCAGGCTTGGGATCAGCTCGGTCCCCTCTG
453 GCCAGTCGGAGAGGCCGATCGAAGAGGCATAATGCGCAAGCTCGGGATCAGCCCGATCCCCTCTG
* ** * * ** *
23048866 CGTACTATTGATCCCGCTGTCGGTCCTCCTGCCGATCCGACTGGGGCTTAGACATGCAGTGAACT
518 CATACTACCGATCCCACTGCCGGTCCTCCCCCCGATCCGACTGGGGCTTAGACATGCAATGAACT
* *
23048931 CCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAAAGAAGCAGAATG
583 CCGTATGCCTAAGCCAACCAACGAAACGAGCGTACGGGCACTCAGCCGGCCAAAGAAGCAGAATG
* * * * * *
23048996 CGTAAGCCAGGGATCAACTCGGACCCCCCCTGCGTGTTGTCGATCCTACTGTTGGTCCCGCTACC
648 CGCAAGCCAGGGATCAACTCCGACCCCCCCTACATGCTATCGATCCTACTGTTGGTCCCGCTACC
* * * * *
23049061 GTAACCTTCAGCCCGGTCCAATCTTATACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAA
713 GCAACCCTCAGCCCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAA
* * * * *
23049126 CTCCGTATGCCTAAGCCAACCCACAAAAAGAGCGTGCGGGTGCTCAGCCGACCGAAGAGGCAGAA
778 CTCCATATACCGAAGCCAACCCACAAAAAGAACGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAA
** * * **
23049191 TGTGCAAGTCGAGAATTGACCTTGTCCCC
843 TGCACAAGCCAAGAATTGACCCAGTCCCC
* * * *
23049220 CCTACGTGCTGTCGATCCTGCTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTTGGAATGAAC
1 CCTGCGTGCTGTCGATCCTGCTGCCATAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAAC
* * * * * **
23049285 TTCGTATGCCTAAGTCAACCCACGAAATGAGCGTCCGAGAGCTAAGCCGGTCGGAGAGTTATAAT
65 TTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTAAGCCAGTCGAAGAGGCATAAT
* ** *
23049350 GCACAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTGTTGGTCTCGCTACCACAACCCTCGG
130 GCACAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGGTCTCGCTGCCACAACCCTCGG
* * * ** * *
23049415 TCTGGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATAAAACGGGCATGC
195 TCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGC
* * * * *
23049480 GGGTGCTCATCCGGTCGAAGAGGCAGAATATGTAAGATGGGGATCGACCCGATCCCCCCTGCGTG
260 GGGTGCTCAACCGGCCGAAGAGCCAGAATACGTAAGACGGGGATCGACCCGATCCCCCCTGCGTG
* * ** *
23049545 CTGCCGATCCTGCTGCCGCAACCCTCAG-TCCGGTTTGATCTTAGACTGGGAATGAACTCCGTAT
325 CTACCGATCCTACTGCCGCAACCCTC-GTTCCGGTCCGATCTTAAACTGGGAATGAACTCCGTAT
* * * *
23049609 GCTTAGA-CTAGGATGAACTTCATATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGCGCTCAG
389 GCTTAGATCGAGGACGAACTCCATATGCCTAAGTCAACCCACAAAACGAGC-T-T--ACG----G
*
23049673 TCGGTCGGAGAGGCCAGTCGGAGAGGCC-AGTCAGAA-AGGCATAATGCGTAAGC-CGAGGATCA
446 --GG--GGAGA-GCCAGTCGGAGAGGCCGA-TC-GAAGAGGCATAATGCGCAAGCTCG-GGATCA
** * * *
23049735 GCCCGATCCCCCTCTGCATGTTACCGATCCTACTGCCGGTTCTGCTGCCACAACCCTCGGTCCGG
503 GCCCGAT-CCCCTCTGCATACTACCGATCCCACTGCCGG-TC--CT--C-C--CCC-CGATCCGA
* * * * *
23049800 CTGGGGCTTAGACATGGAATTAACTTCGTATGCCTAAGCCAACCAACGAAATGAGCGTACTGGCA
558 CTGGGGCTTAGACATGCAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTACGGGCA
* ** * * * * *
23049865 CTCAGCCGGTCGGAG-AGCCAGAATGTGCAAGTCAGGGATCCAC-CCGATCCCCCCTATATGCTA
623 CTCAGCCGGCCAAAGAAG-CAGAATGCGCAAGCCAGGGATCAACTCCGACCCCCCCTACATGCTA
* * ** * * *
23049928 TCGATCCT-GTGTTGGTCCTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAA
687 TCGATCCTACTGTTGGTCCCGCTACCGCAACCCTCAGCCCGATCCAATCTTAGACTAGGAATGAA
* * * *
23049992 CTCCGTATGCTTAGACATGTAATGAACTCCATATACCGAAGCCAACCCACGAAATGAATGTGCGG
752 CTCCGTATGCTTAGACATGGAATGAACTCCATATACCGAAGCCAACCCACAAAAAGAACGTGCGG
* * * * * *
23050057 GCGCTCAGCCGGCTGGAGAGGCAGAATGCATAAGCCAAGGATTGGCCCAGTCCCC
817 GCGCTCAGCCGACCGAAGAGGCAGAATGCACAAGCCAAGAATTGACCCAGTCCCC
* * * *
23050112 CCTGTGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
1 CCTGCGTGCTGTCGATCCTGCTGCCATAACCCTCGGTC-CGTCCGATCTTAGACTGGGAATGAAC
* * * * * * *
23050177 TTCATATGCCTAAGTCAAGCCACGAAACAAGCGTGCGGGCGTTGAGCCAATCGAAGAGGCATAAT
65 TTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTAAGCCAGTCGAAGAGGCATAAT
* * * * * * *
23050242 GCAAAAGTCAGGGATCGGCCCAGTCCCCCTCTGCGTGCTGCCGGTCTCGCTGCCCCAACCCTTGG
130 GCACAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGGTCTCGCTGCCACAACCCTCGG
23050307 TCCGACTGGGGCTTAGACATGG-ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGC
195 TCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGC
23050371 GGGTG
260 GGGTG
23050376 TTGAGCCCCC
Statistics
Matches: 940, Mismatches: 183, Indels: 46
0.80 0.16 0.04
Matches are distributed among these distances:
870 3 0.00
871 192 0.20
872 172 0.18
873 2 0.00
875 2 0.00
879 1 0.00
881 2 0.00
883 5 0.01
884 43 0.05
885 26 0.03
886 2 0.00
888 2 0.00
890 1 0.00
891 43 0.05
892 324 0.34
893 24 0.03
894 96 0.10
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (871 bp):
CCTGCGTGCTGTCGATCCTGCTGCCATAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACT
TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTAAGCCAGTCGAAGAGGCATAATG
CACAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGGTCTCGCTGCCACAACCCTCGGT
CCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCG
GGTGCTCAACCGGCCGAAGAGCCAGAATACGTAAGACGGGGATCGACCCGATCCCCCCTGCGTGC
TACCGATCCTACTGCCGCAACCCTCGTTCCGGTCCGATCTTAAACTGGGAATGAACTCCGTATGC
TTAGATCGAGGACGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCTTACGGGGGGAGAGCC
AGTCGGAGAGGCCGATCGAAGAGGCATAATGCGCAAGCTCGGGATCAGCCCGATCCCCTCTGCAT
ACTACCGATCCCACTGCCGGTCCTCCCCCCGATCCGACTGGGGCTTAGACATGCAATGAACTCCG
TATGCCTAAGCCAACCAACGAAACGAGCGTACGGGCACTCAGCCGGCCAAAGAAGCAGAATGCGC
AAGCCAGGGATCAACTCCGACCCCCCCTACATGCTATCGATCCTACTGTTGGTCCCGCTACCGCA
ACCCTCAGCCCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTC
CATATACCGAAGCCAACCCACAAAAAGAACGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGC
ACAAGCCAAGAATTGACCCAGTCCCC
Found at i:23050262 original size:158 final size:158
Alignment explanation
Indices: 23050000--23050382 Score: 373
Period size: 158 Copynumber: 2.4 Consensus size: 158
23049990 AACTCCGTAT
* * * * * * *
23050000 GCTTAGACATGTAATGAACTCCATATACCGAAGCCAACCCACGAAATGAA-TGTGCGGGCGCTCA
1 GCTTAGACATG-GATGAACTCCATATGCCTAAGCCAACCCACGAAA-CAAGCGTGCGGGCGTTGA
** * * * * *
23050064 GCC-GGCTGGAGAGGCAGAATGCATAAGCCAAGGATTGGCCCAGTCCCCC-CTGTGTGCTGTCGA
64 GCCAATC-GAAGAGGCAGAATGCAAAAGCCAAGGATCGGCCCAGTCCCCCTCTGCGTGCTGCCGA
* *
23050127 TC-CTGCTGCCACAACCCTCGGTCTGGTCT-GA
128 TCTC-GCTGCCACAACCCTCGGTC-CGACTGGA
* * * *
23050158 TCTTAGAC-TGGGAATGAACTTCATATGCCTAAGTCAAGCCACGAAACAAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GG-ATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGTTGA
* * * *
23050222 GCCAATCGAAGAGGCATAATGCAAAAGTCAGGGATCGGCCCAGTCCCCCTCTGCGTGCTGCCGGT
64 GCCAATCGAAGAGGCAGAATGCAAAAGCCAAGGATCGGCCCAGTCCCCCTCTGCGTGCTGCCGAT
* * *
23050287 CTCGCTGCCCCAACCCTTGGTCCGACTGGG
129 CTCGCTGCCACAACCCTCGGTCCGACTGGA
* *** *
23050317 GCTTAGACATGGATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGTTGAGC
1 GCTTAGACATGGATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGTTGAGC
23050382 C
66 C
23050383 CCCTACGTGC
Statistics
Matches: 181, Mismatches: 36, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
157 3 0.02
158 135 0.75
159 41 0.23
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGTTGAGC
CAATCGAAGAGGCAGAATGCAAAAGCCAAGGATCGGCCCAGTCCCCCTCTGCGTGCTGCCGATCT
CGCTGCCACAACCCTCGGTCCGACTGGA
Found at i:23050460 original size:26 final size:26
Alignment explanation
Indices: 23050431--23050483 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23050421 CCAGTTCGAT
*
23050431 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
*
23050457 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCATATG
23050483 C
1 C
23050484 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:23051015 original size:26 final size:26
Alignment explanation
Indices: 23050986--23051038 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23050976 CTGGTCCGAT
*
23050986 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
23051012 CTTAGACATGGAATGACCTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
23051038 C
1 C
23051039 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:23051525 original size:158 final size:157
Alignment explanation
Indices: 23051012--23051841 Score: 626
Period size: 158 Copynumber: 5.2 Consensus size: 157
23051002 ACTCCGTATG
* * * **
23051012 CTTAGACATGGAATGACCTCCATATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTACTCA-C
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
23051076 CTGGTCGGAGAGGTAGAATGTGCAAGCTGGGGATCA-GCCCGGTCCCCCCTGCGTGCTATCGATC
66 C-GGTCGGAGAGGCAGAATGCGCAAGCCGGGGAT-AGGCTCGGT-CCCCCTGCGTGCTGTCGATC
* * *
23051140 CTGCTACTGCAACCATCAGTCCG-GTCTGAT
128 CTGCTACTGCAACCCTCGGTCCGCGT-GGAT
* * * *
23051170 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAATCCATGAAACGAGCGTGCGGACGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* ** * * * * * * *
23051234 CAGACCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCTCGATCCCCTTCAGCGTGCT-ACTGGT
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATAGGCTCGGTCCCC--CTGCGTGCTGTC-GAT
* * ** * **
23051298 CCCGCTGCAACAACCCTCGGTTCG-GCTGGGG
127 CCTGCTACTGCAACCCTCGGTCCGCG-TGGAT
* * * * * * *
23051329 CTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGGGTGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* *
23051394 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATAGGCTCGGTGCCCCCTGTGTGCTGTCGATCCT
66 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATAGGCTCGGT-CCCCCTGCGTGCTGTCGATCCT
23051459 GCTACTGCAACCCTCGGTCCGACGT-GAT
130 GCTACTGCAACCCTCGGTCCG-CGTGGAT
* * *
23051487 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGAGCGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * **
23051551 CCGGTCGGAGAGGCATAATACGCAAGCCGGGGATTA-ACCCGATCCCCTTCTATGTGCTGTCGAT
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGA-TAGGCTCGGTCCCC--CTGCGTGCTGTCGAT
* * **
23051615 CCCGCTGCTGGTCCTGCTACCACAACCCTCGGTTCG-GTTGGGG
127 --C-CTGC---TACTG------CAACCCTCGGTCCGCG-TGGAT
* * * * * *
23051658 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
23051723 TGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCT-AGTCCCCCCTACGTGCTGTCGATCT
66 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGAT-AGGCTCGGT-CCCCCTGCGTGCTGTCGATCC
* * * *
23051787 TGCT-CCGTAACCCTCGGTCTG-GTTCGAT
129 TGCTACTGCAACCCTCGGTCCGCG-TGGAT
23051815 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
23051842 TTAGACTGGG
Statistics
Matches: 529, Mismatches: 108, Indels: 71
0.75 0.15 0.10
Matches are distributed among these distances:
156 1 0.00
157 49 0.09
158 198 0.37
159 136 0.26
160 7 0.01
161 1 0.00
162 4 0.01
163 2 0.00
164 1 0.00
165 4 0.01
167 3 0.01
168 1 0.00
169 1 0.00
170 16 0.03
171 99 0.19
172 6 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATAGGCTCGGTCCCCCTGCGTGCTGTCGATCCTG
CTACTGCAACCCTCGGTCCGCGTGGAT
Found at i:23051783 original size:329 final size:316
Alignment explanation
Indices: 23051011--23051841 Score: 1024
Period size: 317 Copynumber: 2.6 Consensus size: 316
23051001 AACTCCGTAT
* * * * *
23051011 GCTTAGACATGGAATGACCTCCATATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTACTCAC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTACTCAA
* * * * *
23051076 CTGGTCGGAGAGGTAGAATGTGCAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCC
66 CTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCCTGCGTGCTGTCGATCC
* *
23051141 TGCTACTGCAACCATCAGTCCG-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
131 TGCTACTGCAACCCTCGGTCCGCG--TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
23051205 ATCCATGAAACGAGCGTGCGGACGCTGAGCAGACCGGAGAGGCATAATGCGCAAGCCAGGGATCG
194 ACCCATGAAACGAGCGTACGGACGCTCAGCAGACCGGAGAGGCATAATACGCAAGCCAGGGATCA
* * *
23051270 GCTCGATCCCCTTCAGCGTGCTACTGGTCCCGCTGCAACAACCCTCGGTTCGGCTGGG
259 ACCCGATCCCCTTCAGCGTGCTACTGGTCCCGCTACAACAACCCTCGGTTCGGCTGGG
* *
23051328 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGGGTGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTACTCAA
* * * * *
23051393 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGAT-AGGCTCGGTGCCCCCTGTGTGCTGTCGATC
66 CTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCT-GGTCCCCCCTGCGTGCTGTCGATC
*
23051457 CTGCTACTGCAACCCTCGGTCCGACGTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
130 CTGCTACTGCAACCCTCGGTCCG-CGTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* ** * *
23051522 ACCCATGAAACGAGCGTAC-GAGCGCTCAGCCGGTCGGAGAGGCATAATACGCAAGCCGGGGATT
194 ACCCATGAAACGAGCGTACGGA-CGCTCAGCAGACCGGAGAGGCATAATACGCAAGCCAGGGATC
* * *
23051586 AACCCGATCCCCTTCTATGTGCTGTCGATCCCGCTGCTGGTCCTGCTACCACAACCCTCGGTTCG
258 AACCCGATCCCCTTC-A------G-CG-T---GCTACTGGTCCCGCTACAACAACCCTCGGTTCG
*
23051651 GTTGGG
311 GCTGGG
** * * *
23051657 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTACTCAA
* * *
23051722 CTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCTAGTCCCCCCTACGTGCTGTCGATCT
66 CTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCCTGCGTGCTGTCGATCC
* * *
23051787 TGCT-CCGTAACCCTCGGTCTG-GTTCGATCTTAGACTGGGAATGAACTCCGTATGC
131 TGCTACTGCAACCCTCGGTCCGCG-T-GATCTTAGACTGGGAATGAACTCCGTATGC
23051842 TTAGACTGGG
Statistics
Matches: 439, Mismatches: 56, Indels: 27
0.84 0.11 0.05
Matches are distributed among these distances:
316 5 0.01
317 231 0.53
318 1 0.00
319 1 0.00
324 1 0.00
325 2 0.00
326 2 0.00
327 1 0.00
328 43 0.10
329 148 0.34
330 4 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTACTCAA
CTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCCTGCGTGCTGTCGATCC
TGCTACTGCAACCCTCGGTCCGCGTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCATGAAACGAGCGTACGGACGCTCAGCAGACCGGAGAGGCATAATACGCAAGCCAGGGATCAAC
CCGATCCCCTTCAGCGTGCTACTGGTCCCGCTACAACAACCCTCGGTTCGGCTGGG
Found at i:23051851 original size:26 final size:26
Alignment explanation
Indices: 23051815--23051867 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23051805 CTGGTTCGAT
23051815 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23051841 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23051867 C
1 C
23051868 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23052623 original size:159 final size:156
Alignment explanation
Indices: 23052330--23052820 Score: 396
Period size: 159 Copynumber: 3.1 Consensus size: 156
23052320 GCTAAGACAT
* * * * * * *** *
23052330 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCCACCGGAG
1 GGAATGAACTCCGTAAGCCTAAGCCAACCCATGAAAAGAGCATGCGAGCGCTCAACCGGTCAGAG
* ** * ** * * ** *
23052395 AGGCAGAATGCATAAGCCGGTGATTAACCCGGTCCTCACC-TGCATGCTGTCGATCCTGCTA-CC
66 AGGAAGAATGCGCAAGCCGGGGATCGACCCGATCC-C-CCTTGCGTGCTACCAATCCTGC-AGCC
** *
23052458 GTAACCCTCAGTCCAGTCTGATCTTAGGCTG
128 ACAACCCTC-GTCC-GTCTGATCTTAGACTG
* * * * * * *
23052489 GGAATGAACTCCGTAAGCCTAAGTCAACCCATGAAAAGAGCATGTGGGTGCTGAGCCGGTCGGAG
1 GGAATGAACTCCGTAAGCCTAAGCCAACCCATGAAAAGAGCATGCGAGCGCTCAACCGGTCAGAG
* * **
23052554 AGGAATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGGTCCCT-CAGCCA
66 AGGAAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCT-TGCGTGCTACCAAT-CCTGCAGCCA
* * *
23052618 CAACCCTCGATTCGGCTGGGTCTTAGACAT-
129 CAACCCTCG-TCCGTCT-GATCTTAGAC-TG
* * * *
23052648 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGAGCGCTCAACCGGTCAGAG
1 GGAATGAACTCCGTAAGCCTAAGCCAACCCATGAAAAGAGCATGCGAGCGCTCAACCGGTCAGAG
* * * ** * *
23052713 AGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTTGCGTGCTGTCAATCCTGCTGCCGCA
66 AGGAAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTTGCGTGCTACCAATCCTGCAGCCACA
*
23052778 ACCTTCGGTCCGGTCTGATCTTAGACTG
131 ACCCTC-GTCC-GTCTGATCTTAGACTG
23052806 GGAATGAACTCCGTA
1 GGAATGAACTCCGTA
23052821 TGCTTAGACT
Statistics
Matches: 266, Mismatches: 55, Indels: 23
0.77 0.16 0.07
Matches are distributed among these distances:
157 6 0.02
158 52 0.20
159 204 0.77
160 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (156 bp):
GGAATGAACTCCGTAAGCCTAAGCCAACCCATGAAAAGAGCATGCGAGCGCTCAACCGGTCAGAG
AGGAAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTTGCGTGCTACCAATCCTGCAGCCACA
ACCCTCGTCCGTCTGATCTTAGACTG
Found at i:23052826 original size:26 final size:26
Alignment explanation
Indices: 23052797--23052847 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23052787 CCGGTCTGAT
23052797 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
23052823 CTTAGACTGAGGATGAACTCCGTAT
1 CTTAGACTGAGGATGAACTCCGTAT
23052848 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:23053052 original size:26 final size:26
Alignment explanation
Indices: 23053023--23053075 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23053013 GACTCAAAAT
23053023 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
23053049 CTTAGACATGGAATGAGCTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23053075 C
1 C
23053076 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23054225 original size:11 final size:11
Alignment explanation
Indices: 23054209--23054238 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
23054199 GGTTAGGCTG
23054209 TCCGACGATGC
1 TCCGACGATGC
23054220 TCCGACGATGC
1 TCCGACGATGC
23054231 TCCGACGA
1 TCCGACGA
23054239 CGGTGCCCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.20, C:0.37, G:0.27, T:0.17
Consensus pattern (11 bp):
TCCGACGATGC
Found at i:23054698 original size:159 final size:157
Alignment explanation
Indices: 23054335--23054753 Score: 450
Period size: 159 Copynumber: 2.6 Consensus size: 157
23054325 AACTCTGTAT
* * * *
23054335 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAGCCACGAAATCAGCGTGCAGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC-AAAACAGCGTGCGGGCGCTAAG
* * * * *
23054400 CCGACCGGAGAGGCAGAATGCACAAG-TCGGGGATTAGTCCGGTCCACCCTGCATGCTATTGATC
65 CCGACCGAAGAGGCAGAATGCGCAAGCT-GGGGATCAGCCCGGTCCACCCTGCATGCTACTGATC
* * *
23054464 CTGCTGCTACAACCCTCGGTCTGATCTGA
129 CCGCTGCCACAACCCTCGGTCTGAGCTGA
* * * * *
23054493 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACAAAACAAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAC-AGCGTGCGGGCGCTAA
* * * * *
23054557 GCCGACCGAAGAGGCATAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCTGGT
64 GCCGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCACC-CTGCATGCTACTGAT
* *
23054622 CCCGCTGCCACAACCCTTGGTCTG-GCTGGG
128 CCCGCTGCCACAACCCTCGGTCTGAGCT-GA
* * * * *
23054652 GCTTAGACATGGAATGAAGTCCCTACGCCTAAGCCAACCCACAAAACGGATGTGCGGGCGCTAAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAG-CGTGCGGGCGCTAAG
* * *
23054717 CCGATC-AGAGAGGCAGAATGCGTAAGCCGGGGATCAG
65 CCGACCGA-AGAGGCAGAATGCGCAAGCTGGGGATCAG
23054754 GCCAATCCCC
Statistics
Matches: 216, Mismatches: 37, Indels: 15
0.81 0.14 0.06
Matches are distributed among these distances:
157 5 0.02
158 94 0.44
159 116 0.54
160 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.29, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAGCGTGCGGGCGCTAAGC
CGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCACCCTGCATGCTACTGATCCC
GCTGCCACAACCCTCGGTCTGAGCTGA
Found at i:23055197 original size:27 final size:27
Alignment explanation
Indices: 23055167--23055221 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
23055157 TCGGTCCGAT
*
23055167 CTTAGAC-TAGAAATGAACTTCCGTATG
1 CTTAGACATAGAAATGAA-TTCCGGATG
*
23055194 CTTAGACATGGAAATGAATTCCGGATG
1 CTTAGACATAGAAATGAATTCCGGATG
23055221 C
1 C
23055222 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 16 0.64
28 9 0.36
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (27 bp):
CTTAGACATAGAAATGAATTCCGGATG
Found at i:23055703 original size:158 final size:157
Alignment explanation
Indices: 23055194--23056002 Score: 556
Period size: 158 Copynumber: 5.1 Consensus size: 157
23055184 CTTCCGTATG
* ** * * *
23055194 CTTAGACATGGAAATGAATTCCGGATGCCTAAGCCAACCCACGAATCGAGCGTACGGGCGCTCAG
1 CTTAGAC-TGG-AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* ** * * * * * **
23055259 CC-GACCAAGAGGCAGAATGCGCAAG-TCGGGGATCAGTCGGGTCCCCCTTGCGTACTGTCGATC
64 CCAGTCGGAGAGGCAGAATGCGCAAGCT-GGGGATCAGCCCGGTCCCCCCTACGTGCTACCGATC
* * * * * *
23055322 TTGTTACCGCAACCCTCAGTCTGATTCGAT
128 CTGCTACCACAACCCTCAGTCCGGTCCGAT
** * * ** * * * * *
23055352 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAAGCCATTAAATGAACGTGTAGGTGCTGAGC
1 CTTAGACT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * * * * * ** *
23055417 CGGTCAGAGAGGCATAAT-CGTAAGCTGGGGATCAGCCTGGTCCCCTCTGCGTGCTGTCGGTCC-
65 CAGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTACGTGCTACCGATCCT
* * * * * **
23055480 ACTTCCACAACCCTCGGTCTGG-CTAGGC
130 GCTACCACAACCCTCAGTCCGGTC-CGAT
* *
23055508 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGTGCTCAGC
1 CTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
*
23055573 CAGTCGGAGAGGCAGAATGCACAAGCTGGGGATCAGCCCGGTCCCCCCTACGTGCTACCGATCCT
65 CAGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTACGTGCTACCGATCCT
* * * *
23055638 ACTACCGCAACCCTCGGACCGGTCCGAT
130 GCTACCACAACCCTCAGTCCGGTCCGAT
** * * * * * *
23055666 CTTAGACTGGGAATGAACTCTGTACGCATAAGTCAACCCACGAAACGAGTGTGCAAGCGCTGAGT
1 CTTAGACT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG-
* * * * ** ** * * * *
23055731 CGAG-CGAAGAGGCATAATGCACAAGCCAGGGATTGGCCCGGTCCTCCTCTACATGCTACTGGTC
64 CCAGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCC-CCCCTACGTGCTACCGATC
* * * * * **
23055795 CCGCTGCAACAACCTTCA-TCCGG-CTGGGG
128 CTGCTACCACAACCCTCAGTCCGGTC-CGAT
* * *
23055824 CTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * * * * * * *
23055889 C-GACCGGAGAGGCAAAATGTGCAAGCCGAGGATCGGCCCAGTCCCCCCTATGTGGTACCGATCC
65 CAG-TCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTACGTGCTACCGATCC
* *
23055953 TGCTGCCACAACCCTCAGTCCGGTCTGAT
129 TGCTACCACAACCCTCAGTCCGGTCCGAT
23055982 CTTAGACTGGGAATGAACTCC
1 CTTAGACT-GGAATGAACTCC
23056003 ATACGCTTAG
Statistics
Matches: 502, Mismatches: 131, Indels: 36
0.75 0.20 0.05
Matches are distributed among these distances:
156 85 0.17
157 146 0.29
158 239 0.48
159 32 0.06
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCC
AGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTACGTGCTACCGATCCTG
CTACCACAACCCTCAGTCCGGTCCGAT
Found at i:23057113 original size:26 final size:26
Alignment explanation
Indices: 23057077--23057129 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23057067 CTGGTCCGAT
23057077 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
23057103 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
23057129 C
1 C
23057130 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23057496 original size:26 final size:26
Alignment explanation
Indices: 23057456--23057508 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23057446 TCATTCTGAT
*
23057456 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
23057482 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
23057508 C
1 C
23057509 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Done.