Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 227 of 402
Found at i:23057916 original size:158 final size:156
Alignment explanation
Indices: 23057481--23057919 Score: 454
Period size: 157 Copynumber: 2.8 Consensus size: 156
23057471 AACTTCGTAT
* * *
23057481 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AATCGAGCGTGCATGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAT-GAGCGTGCAGGCGCTCA
* * *
23057545 GCCGACAGGAGAGGCAGAATGCGCAAGTCGGGGATCGGTCGGGTCCCCCCTGCGTACTGTCGATC
65 GCCGACA-GAGAGGCAGAAT-CGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
** *
23057610 CTGCTGCCGCAACCCTTGATCCGGTCCAA
128 CCACTGCCACAACCCTTGATCCGGTCCAA
* * * * * *
23057639 TCTTAGAC-TGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGACGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAG
* * * * * *
23057703 TCGATCGGAGAGGCATAATCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGGTCC
66 CCGA-CAGAGAGGCAGAATCGCAAGTCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCC
* * ***
23057768 CACTGCCATAACCCTTGGTCCGG-CTGGG
129 CACTGCCACAACCCTTGATCCGGTC-CAA
* * *
23057796 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAG
* * * * * *
23057861 CCAGCCAGAGAGGTAGAATACACAAG-CTGGGAATTGGCCCGGTCCTCCCTGCGTGCTGT
66 CC-GACAGAGAGGCAGAAT-CGCAAGTC-GGGGATCGGCCCGGTCCCCCCTGCGTGCTGT
23057920 AGTTCCTGTT
Statistics
Matches: 227, Mismatches: 46, Indels: 16
0.79 0.16 0.06
Matches are distributed among these distances:
156 26 0.11
157 98 0.43
158 81 0.36
159 22 0.10
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAG
CCGACAGAGAGGCAGAATCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCCA
CTGCCACAACCCTTGATCCGGTCCAA
Found at i:23058125 original size:184 final size:184
Alignment explanation
Indices: 23057796--23058158 Score: 444
Period size: 184 Copynumber: 2.0 Consensus size: 184
23057786 TCCGGCTGGG
* * * * * *
23057796 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * ** * * *
23057861 CCAGCCAGAGAGGTAGAATACACAAGCTGGGAATTGGCCCGGTCCTCCCTGCGTGCTGTAGTTCC
66 CCAGACAGAGAGGCAGAATACACAAGCACGGAATTGGCCCGGTCCTCCCTGCATGCTATAGATCC
* *
23057926 TGTTGTCGAAACCCTCAGTCCGATCCGATCTTAGACT-GAGAATGAACTCCGTAT
131 TGCTGTCGAAACCCTCAGACCGATCCGATCTTAGACTAG-GAATGAACTCCGTAT
* *
23057980 GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAACGAGTGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
** * * *
23058045 CCAGACAGAGAGGCAGAATACGTAAGCCACGG-ATTGGCTCGGTCC-CACTTGCATGCTATCGAT
66 CCAGACAGAGAGGCAGAATACACAAG-CACGGAATTGGCCCGGTCCTC-CCTGCATGCTATAGAT
* * * *
23058108 CCTGCTGTCGCAACCCTCGGACTGGTCCGATCTTAGACTAGGAATGAACTC
129 CCTGCTGTCGAAACCCTCAGACCGATCCGATCTTAGACTAGGAATGAACTC
23058159 TGTACGCACA
Statistics
Matches: 150, Mismatches: 26, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
183 1 0.01
184 145 0.97
185 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCAGACAGAGAGGCAGAATACACAAGCACGGAATTGGCCCGGTCCTCCCTGCATGCTATAGATCC
TGCTGTCGAAACCCTCAGACCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:23059419 original size:242 final size:242
Alignment explanation
Indices: 23058949--23059406 Score: 553
Period size: 242 Copynumber: 1.9 Consensus size: 242
23058939 CAACCGGCCA
* * * *
23058949 GAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCTCCACAGCGTGCTATCGATCCTGTTATC
1 GAGAGGCAGAATGCACAAGCTGGGGATCAGCCCGGTCCCCACAGCATGCTATCGATCCTGCTATC
* * * * * *
23059014 GCAACCCTTGGGCCGATCCGATCTTAGACTGGGAATGAACTCTGGATGCCTAATTCAGCCCATGA
66 GCAACCCTCGGGCCGATCCGATCTTAGACTAGGAATGAACTCTGGATGCATAAGTCAACCCACGA
* * * * * *
23059079 AACGAGCGTGCGAGCACTGAACCAGCCGAAAAGGTATAATGCGCAAGTCGGGGTTCGGCCCGGTC
131 AACAAGCGTGCGAGCACGGAACCAGCCGAAAAGGCATAATGCGCAAGTCAGGGATCAGCCCGGTC
23059144 CCCATCTACGTGCTGCCGGTCCCGCTGCCACAACCCTCAGTCGATCG
196 CCCATCTACGTGCTGCCGGTCCCGCTGCCACAACCCTCAGTCGATCG
* * * * *
23059191 GAGAGGCAGAATGCACAAG-TCGGGGATCAGTCTGGTCCCCCCTGCATGCTGTCGATCCTGCTA-
1 GAGAGGCAGAATGCACAAGCT-GGGGATCAGCCCGGTCCCCACAGCATGCTATCGATCCTGCTAT
* * * * *
23059254 CTGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCATAAGTCAATCCAC
65 C-GCAACCCTCGGGCCGATCCGATCTTAGACTAGGAATGAACTCTGGATGCATAAGTCAACCCAC
* * * * * *
23059319 GAAACAAGCGTGCGAGCACGGAGCCGGTCGAAGAGGCATAATGCGGAAG-CTAGGGATCAGCTCG
129 GAAACAAGCGTGCGAGCACGGAACCAGCCGAAAAGGCATAATGCGCAAGTC-AGGGATCAGCCCG
* * *
23059383 GTCCCCCTCTATGTGCTGTCGGTC
193 GTCCCCATCTACGTGCTGCCGGTC
23059407 TTGTTGCCAC
Statistics
Matches: 178, Mismatches: 35, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
241 3 0.02
242 175 0.98
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (242 bp):
GAGAGGCAGAATGCACAAGCTGGGGATCAGCCCGGTCCCCACAGCATGCTATCGATCCTGCTATC
GCAACCCTCGGGCCGATCCGATCTTAGACTAGGAATGAACTCTGGATGCATAAGTCAACCCACGA
AACAAGCGTGCGAGCACGGAACCAGCCGAAAAGGCATAATGCGCAAGTCAGGGATCAGCCCGGTC
CCCATCTACGTGCTGCCGGTCCCGCTGCCACAACCCTCAGTCGATCG
Found at i:23059647 original size:158 final size:156
Alignment explanation
Indices: 23059188--23059805 Score: 496
Period size: 159 Copynumber: 3.9 Consensus size: 156
23059178 CCTCAGTCGA
* ** * **
23059188 TCGGAGAGGCAGAATGCACAAGTCGGGGATCAGTCTGGTCCCCCCTGCATGCTGTCGATCCTGCT
1 TCGGAGAGGCAGAATGCGCAAGTTAGGGATCGGTC-GGTCCCCCCTGTGTGCTGTCGATCCTGCT
* ** * * *
23059253 ACTGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCATAAGTCAATCCA
65 GCCACAACCCTCGGTCTGGTCTGATCTTAGACT-GGAATGAACTCTGTATGCCTAAGTCAACCCA
* * *
23059318 CGAAACAAGCGTGCGAGCACGGAGCCGG
129 TGAAACGAGCGTGCGAGCACGAAGCCGG
* * * * * * * * *
23059346 TCGAAGAGGCATAATGCGGAAGCTAGGGATCAGCTCGGTCCCCCTCTATGTGCTGTCGGTCTTGT
1 TCGGAGAGGCAGAATGCGCAAGTTAGGGATC-GGTCGGTCCCCC-CTGTGTGCTGTCGATCCTGC
* * ** * ** *
23059411 TGCCACAACACTTGGTCTGG-CTGGGGCTTAGACATGGAACGAACTCCCTATGCCTAAGCCAACC
64 TGCCACAACCCTCGGTCTGGTCT-GATCTTAGAC-TGGAATGAACTCTGTATGCCTAAGTCAACC
* * * ** *
23059475 CATGAAATGGGCGTGCGGGTGCTAAGCCGG
127 CATGAAACGAGCGTGCGAGCACGAAGCCGG
* *
23059505 TCGGAGAGGCAGAATGCGCAAGTTAGGGATCGGTAGGGTCCCCCCTGTGTACTGTCGATCCTGCT
1 TCGGAGAGGCAGAATGCGCAAGTTAGGGATCGGT-CGGTCCCCCCTGTGTGCTGTCGATCCTGCT
23059570 GCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGAATGAACTCTGTATGCCTTAAGTCAACCCA
65 GCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGAATGAACTCTGTATGCC-TAAGTCAACCCA
*
23059635 TGAAACGAGCGTGC-AGGCGCTGAA-CC-G
129 TGAAACGAGCGTGCGA-GCAC-GAAGCCGG
* * * * *** * * ** *
23059662 ACCGAGAGGCATTAAT-TGCAAGCCCGGGATCAGCCGGTCCCCCTCTACGTGCTGTCGATCC-AC
1 TCGGAGAGGCA-GAATGCGCAAGTTAGGGATCGGTCGGTCCCCC-CTGTGTGCTGTCGATCCTGC
* * * ** * *
23059725 TACCACAACCCTCAGTCCGG-CTGGGGCTTAGACATGAAATGAACTCCT-TATGCCTAAGCCAAC
64 TGCCACAACCCTCGGTCTGGTCT-GATCTTAGAC-TGGAATGAACT-CTGTATGCCTAAGTCAAC
*
23059788 CCATGAAACGGGCGTGCG
126 CCATGAAACGAGCGTGCG
23059806 GGCGCTCAGC
Statistics
Matches: 361, Mismatches: 84, Indels: 31
0.76 0.18 0.07
Matches are distributed among these distances:
155 2 0.01
156 58 0.16
157 69 0.19
158 110 0.30
159 121 0.34
160 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (156 bp):
TCGGAGAGGCAGAATGCGCAAGTTAGGGATCGGTCGGTCCCCCCTGTGTGCTGTCGATCCTGCTG
CCACAACCCTCGGTCTGGTCTGATCTTAGACTGGAATGAACTCTGTATGCCTAAGTCAACCCATG
AAACGAGCGTGCGAGCACGAAGCCGG
Found at i:23059895 original size:314 final size:316
Alignment explanation
Indices: 23059191--23059935 Score: 824
Period size: 314 Copynumber: 2.4 Consensus size: 316
23059181 CAGTCGATCG
* * * * *
23059191 GAGAGGCAGAATGCACAAG-TCGGGGATCAGTCTGGTCCCCCCTGCATGCTGTCGATCCTGCT-A
1 GAGAGGCAGAATACGCAAGCT-AGGGATCAGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGA
*
23059254 CTGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATG-CATAAGTCAATCCA
65 C-GCAACCCTCGGTCCGGTCTGATCTTAGACT-GGAATGAACTCTGTATGCCATAAGTCAACCCA
* ** *
23059318 CGAAACAAGCGTGCGAGCACGGAGCCGGTCGAAGAGGCATAATGCGGAAGCTAGGGATCAGCTCG
128 CGAAACAAGCGTGCGAGCACGGAACCGACCGAAGAGGCATAATGC-GAAGCCAGGGATCAGCTCG
* * *** * ** * *
23059383 GTCCCCCTCTATGTGCTGTCGGTCTTGTTGCCACAACACTTGGTCTGGCTGGGGCTTAGACATGG
192 GTCCCCCTCTACGTGCTGTCGATCTCACTACCACAACACTCAGTCCGGCTGGGGCTTAGACATGA
* * ** *
23059448 AACGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTAAGCCGGTCG
257 AACGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTAAGCCGACCA
* * * *** * * *
23059508 GAGAGGCAGAATGCGCAAGTTAGGGATCGGTAGGGTCCCCCCTGTGTACTGTCGATCCTGCTGCC
1 GAGAGGCAGAATACGCAAGCTAGGGATCAGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGAC
* * * *
23059573 ACAACCCTCGGTCTGGTCTGATCTTAGACTGGAATGAACTCTGTATGCCTTAAGTCAACCCATGA
66 GCAACCCTCGGTCCGGTCTGATCTTAGACTGGAATGAACTCTGTATGCCATAAGTCAACCCACGA
* * * *
23059638 AACGAGCGTGC-AGGCGCTGAACCGACCG-AGAGGCATTAATTGC-AAGCCCGGGATCAGC-CGG
131 AACAAGCGTGCGA-GCACGGAACCGACCGAAGAGGCA-TAA-TGCGAAGCCAGGGATCAGCTCGG
*
23059699 TCCCCCTCTACGTGCTGTCGATC-CACTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGAA
193 TCCCCCTCTACGTGCTGTCGATCTCACTACCACAACACTCAGTCCGGCTGGGGCTTAGACATGAA
* * * *
23059763 ATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCTGACCA
258 ACGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTAAGCCGACCA
* * * * * *
23059822 GAGAGGTAGAATACGCAAGCT-GGGAATTAGCCTGGTCCTCCCTGCGTGCTGTCGTTCCTACTGT
1 GAGAGGCAGAATACGCAAGCTAGGG-ATCAGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGA
* * * * *
23059886 CGGAACCCTCGGTCCAGTCCGATCTTAGATTGAGAATGAACTCCGTATGC
65 CGCAACCCTCGGTCCGGTCTGATCTTAGACTG-GAATGAACTCTGTATGC
23059936 TTAGACATTG
Statistics
Matches: 357, Mismatches: 63, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
313 3 0.01
314 154 0.43
315 40 0.11
316 38 0.11
317 117 0.33
318 5 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (316 bp):
GAGAGGCAGAATACGCAAGCTAGGGATCAGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGAC
GCAACCCTCGGTCCGGTCTGATCTTAGACTGGAATGAACTCTGTATGCCATAAGTCAACCCACGA
AACAAGCGTGCGAGCACGGAACCGACCGAAGAGGCATAATGCGAAGCCAGGGATCAGCTCGGTCC
CCCTCTACGTGCTGTCGATCTCACTACCACAACACTCAGTCCGGCTGGGGCTTAGACATGAAACG
AACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTAAGCCGACCA
Found at i:23059935 original size:158 final size:153
Alignment explanation
Indices: 23059191--23059935 Score: 476
Period size: 158 Copynumber: 4.7 Consensus size: 153
23059181 CAGTCGATCG
* * * * * * *
23059191 GAGAGGCAGAATGCACAAGTCGGGGATCAGTCTGGTCCCCCCTGCATGCTGTCGATCCTGCTACT
1 GAGAGGCAGAAT-CGCAAG-CTGGGATCAG-CCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCC
* * * * * * * *
23059256 GCAACCCTCGGTCCGGTCTGATCTTAGACT-AGGAATGAACTCTGTATGCATAAGTCAATCCACG
63 ACAACCCTCGGTCC-GTCCGATCTTAGAATGA-GAATGAACTCCGTATGCCTAAGCCAACCCATG
** * * ** **
23059320 AAACAAGCGTGCGAGCACGGAGCCGGTC
126 AAACGGGCGTGCGGGCGCTAAGCCGACC
* * ** * * **
23059348 GAAGAGGCATAATGCGGAAGCTAGGGATCAGCTCGGTCCCCCTCTATGTGCTGTCGGTCTTGTTG
1 G-AGAGGCAGAAT-CGCAAGCT-GGGATCAGC-CGGTCCCCC-CTGCGTGCTGTCGATCCTACTG
* * * * * ** * *
23059413 CCACAACACTTGGTCTGGCTGGGGCTTAGACATG-GAACGAACTCCCTATGCCTAAGCCAACCCA
61 CCACAACCCTCGGTCCGTC-CGATCTTAGA-ATGAGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * *
23059477 TGAAATGGGCGTGCGGGTGCTAAGCCGGTCG
124 TGAAACGGGCGTGCGGGCGCTAAGCC-GACC
* * ** * * *
23059508 GAGAGGCAGAATGCGCAAGTTAGGGATCGGTAGGGTCCCCCCTGTGTACTGTCGATCCTGCTGCC
1 GAGAGGCAGAAT-CGCAAGCT-GGGATCAG-CCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCC
* * * * *
23059573 ACAACCCTCGGTCTGGTCTGATCTTAGACTG-GAATGAACTCTGTATGCCTTAAGTCAACCCATG
63 ACAACCCTCGGTC-CGTCCGATCTTAGAATGAGAATGAACTCCGTATGCC-TAAGCCAACCCATG
* *
23059637 AAACGAGCGTGCAGGCGCTGAA-CCGACC
126 AAACGGGCGTGCGGGCGCT-AAGCCGACC
* * * * *
23059665 GAGAGGCATTAATTGCAAGCCCGGGATCAGCCGGTCCCCCTCTACGTGCTGTCGATCC-ACTACC
1 GAGAGGCA-GAATCGCAAG-CTGGGATCAGCCGGTCCCCC-CTGCGTGCTGTCGATCCTACTGCC
* * * ** *
23059729 ACAACCCTCAGTCCGGCTGGGGCTTAGACATGA-AATGAACTCCTTATGCCTAAGCCAACCCATG
63 ACAACCCTCGGTCCGTC-CGATCTTAGA-ATGAGAATGAACTCCGTATGCCTAAGCCAACCCATG
* *
23059793 AAACGGGCGTGCGGGCGCTCAGCTGACC
126 AAACGGGCGTGCGGGCGCTAAGCCGACC
* * * * *
23059821 AGAGAGGTAGAATACGCAAGCTGGGAATTAGCCTGGTCCTCCCTGCGTGCTGTCGTTCCTACTGT
1 -GAGAGGCAGAAT-CGCAAGCTGGG-ATCAGCC-GGTCCCCCCTGCGTGCTGTCGATCCTACTGC
** *
23059886 CGGAACCCTCGGTCCAGTCCGATCTTAGATTGAGAATGAACTCCGTATGC
62 CACAACCCTCGGTCC-GTCCGATCTTAGAATGAGAATGAACTCCGTATGC
23059936 TTAGACATTG
Statistics
Matches: 448, Mismatches: 114, Indels: 51
0.73 0.19 0.08
Matches are distributed among these distances:
155 3 0.01
156 73 0.16
157 109 0.24
158 147 0.33
159 113 0.25
160 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (153 bp):
GAGAGGCAGAATCGCAAGCTGGGATCAGCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCACA
ACCCTCGGTCCGTCCGATCTTAGAATGAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG
GGCGTGCGGGCGCTAAGCCGACC
Found at i:23060079 original size:184 final size:184
Alignment explanation
Indices: 23059750--23060112 Score: 457
Period size: 184 Copynumber: 2.0 Consensus size: 184
23059740 TCCGGCTGGG
* * * * *
23059750 GCTTAGACATGAAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGAAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * * *
23059815 CTGACCAGAGAGGTAGAATACGCAAGCTGGGAATTAGCCTGGTCCTCCCTGCGTGCTGTCGTTCC
66 CGGACCAGAGAGGCAGAATACGCAAGCCGGGAATTAGCCCGGTCCTCCCTGCGTGCTATCGATCC
* * * *
23059880 TACTGTCGGAACCCTCGGTCCAGTCCGATCTTAGA-TTGAGAATGAACTCCGTAT
131 TACTATCGCAACCCTCGGACCAGTCCGATCTTAGACTAG-GAATGAACTCCGTAT
* * *
23059934 GCTTAGACATTG-AATGAACTTCGTATACCTAAGCCAACCCACGAAACGAGTGTGCAGGTGCTCA
1 GCTTAGACA-TGAAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* *
23059998 GCCGGA-CAGAGAGGCAGAATACGCAAGCCGCGG-ATTGGCCCGGTCC-CTCTTGCGTGCTATCG
65 G-CGGACCAGAGAGGCAGAATACGCAAGCCG-GGAATTAGCCCGGTCCTC-CCTGCGTGCTATCG
*
23060060 ATCCTGCTATCGCAACCCTCGGACCAGTCCGATCTTAGACTAGGAATGAACTC
127 ATCCTACTATCGCAACCCTCGGACCAGTCCGATCTTAGACTAGGAATGAACTC
23060113 TGTACGCATA
Statistics
Matches: 153, Mismatches: 21, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
183 1 0.01
184 143 0.93
185 9 0.06
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGAAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CGGACCAGAGAGGCAGAATACGCAAGCCGGGAATTAGCCCGGTCCTCCCTGCGTGCTATCGATCC
TACTATCGCAACCCTCGGACCAGTCCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:23060289 original size:159 final size:158
Alignment explanation
Indices: 23059934--23060343 Score: 389
Period size: 159 Copynumber: 2.6 Consensus size: 158
23059924 AACTCCGTAT
* * * * **
23059934 GCTTAGACATTGAATGAACTTCGTATACCTAAGCCAACCCACGAAACGAGTGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
** * * *
23059999 CCGGACAGAGAGGCAGAATACGCAAGCCGCGGATTGGCCCGGTCCCTCTTGCGTGCTATCGATCC
66 CCGGACAGAGAGGCAGAATACGCAAGCCAAGGATTGACCCGATCCCTCTTGCGTGCTACCGATCC
* * * *
23060064 TGCTATCGCAACCCTCGGACCAGTCCGA
131 CGCTAGCACAACCCTCAGACCAGTCCGA
* * * * * *
23060092 TCTTAGAC-TAGGAATGAACTCTGTACGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCA
* ** * * * * *
23060156 GTCGG-TTGAAGAGGCATAATGCGTAAGCCAAGGATTGACCCGATCCTCTTTTGCGTGCTACCGG
65 GCCGGACAG-AGAGGCAGAATACGCAAGCCAAGGATTGACCCGATCC-CTCTTGCGTGCTACCGA
* * * *
23060220 TCCCGCT-GCAACAACCCTCAGTCC-GGCTGGG
128 TCCCGCTAGC-ACAACCCTCAGACCAGTC-CGA
* *
23060251 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
* **
23060316 CC-GACCGGAGAGGCAGAATGTGCAAGCC
66 CCGGA-CAGAGAGGCAGAATACGCAAGCC
23060344 GGGGATCGGC
Statistics
Matches: 197, Mismatches: 47, Indels: 15
0.76 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 88 0.45
159 105 0.53
160 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
CCGGACAGAGAGGCAGAATACGCAAGCCAAGGATTGACCCGATCCCTCTTGCGTGCTACCGATCC
CGCTAGCACAACCCTCAGACCAGTCCGA
Found at i:23060430 original size:158 final size:155
Alignment explanation
Indices: 23059935--23060430 Score: 472
Period size: 158 Copynumber: 3.1 Consensus size: 155
23059925 ACTCCGTATG
* * * * *
23059935 CTTAGACATTGAATGAACTTCGTATACCTAAGCCAACCCACGAAACGAGTGTGCAGGTGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * *
23060000 CGGACAGAGAGGCAGAATACGCAAGCCGCGGATTGGCCCGGTCCCTCTTGCGTGCTATCGATCCT
65 C-GACGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCC-GTCCCTCTTGCGTGCTATCGATCCT
** * * *
23060065 GCTATCGCAACCCTCGGACCAGTCCGAT
128 GCTGCCACAACCCTCGGTCCGGTCCGAT
* * * * * *
23060093 CTTAGACTAGGAATGAACTCTGTACGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACTGAGT
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG-
* ** * * * * * * * *
23060158 CGGTTGAAGAGGCATAATGCGTAAGCCAAGGATTGACCCGATCCTCTTTTGCGTGCTACCGGTCC
64 CCGACGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCCG-TCC-CTCTTGCGTGCTATCGATCC
* * * * **
23060223 CGCTGCAACAACCCTCAGTCCGG-CTGGGG
127 TGCTGCCACAACCCTCGGTCCGGTC-CGAT
*
23060252 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * * * *
23060317 CGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCAGTCCCCCCTACGTGCTATCGATCCT
65 CGA-CGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCC-GTCCCTCTTGCGTGCTATCGATCCT
* *
23060382 GCTGCCATAACCCTCGGTCTGGTCCGAT
128 GCTGCCACAACCCTCGGTCCGGTCCGAT
23060410 CTTAGACTGGGAATGAACTCC
1 CTTAGACT-GGAATGAACTCC
23060431 ATACACTTAG
Statistics
Matches: 260, Mismatches: 68, Indels: 20
0.75 0.20 0.06
Matches are distributed among these distances:
157 3 0.01
158 136 0.52
159 119 0.46
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (155 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCC
GACGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCCGTCCCTCTTGCGTGCTATCGATCCTGCT
GCCACAACCCTCGGTCCGGTCCGAT
Found at i:23060807 original size:26 final size:26
Alignment explanation
Indices: 23060778--23060830 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23060768 TCCGGTTGAT
*
23060778 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCCTATG
23060804 CTTAGACATGGAATGAACTCCCTATG
1 CTTAGACATGGAATGAACTCCCTATG
23060830 C
1 C
23060831 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCCTATG
Found at i:23061305 original size:26 final size:26
Alignment explanation
Indices: 23061269--23061321 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23061259 CTGGTCTGAT
*
23061269 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
23061295 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
23061321 C
1 C
23061322 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23062823 original size:157 final size:155
Alignment explanation
Indices: 23062367--23062826 Score: 440
Period size: 159 Copynumber: 2.9 Consensus size: 155
23062357 CAACCGACCG
* * * * * *
23062367 GAGAGGCAGAATGCACAAACCGGGGATCAACCCGATCCACCCTGCATGCTATCGATCCTGCTGCT
1 GAGAGGCAGAATGCACAAGCCGGGGATCAACCCAATCCCCCCTGCGTGCTGTCGATCCTGCTCCT
* * *
23062432 ACAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAATTCTGTATGCATAAGTCAACACACAA
66 --AACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAATTC-GTATGCCTAAGTCAACCCACAA
* *
23062497 AACAAGCGTGCGGGCGCTGAGCCGGCCA
128 AACGAGCGTGCGGGCGCTAAGCCGGCCA
* * * * * * * *
23062525 AAGAGGCATAATGCTCAAGCTGGGGATCATCCCAGTCCCCCTCTGCGTGCTGCCGATCCCGCTGC
1 GAGAGGCAGAATGCACAAGCCGGGGATCAACCCAATCCCCC-CTGCGTGCTGTCGATCCTGCT-C
* ** ** * * * *
23062590 CACAACCCTTGGTCTGG-CTGGGGCTTAGACAT-GGAATGAAGTCCCTACGCCTAAGCCAACCCA
64 C-TAACCCTCAGTCTGGTCT-GATCTTAGAC-TGGGAATGAA-TTCGTATGCCTAAGTCAACCCA
* *
23062653 CAAAACG-GACGTGCGGGCGCTAAGTCGGTCA
125 CAAAACGAG-CGTGCGGGCGCTAAGCCGGCCA
* * * * *
23062684 GAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAATCCCCCCTACGTGCGGTCGATCTTGCTCCG
1 GAGAGGCAGAATGCACAAGCCGGGGATCAACCCAATCCCCCCTGCGTGCTGTCGATCCTGCTCC-
* **
23062749 TAACCCTCAGTCTGGTCTGATCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAA
65 TAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAA-TTCGTATGCCTAAGTCAACCCACAAA
*
23062814 ATGAGCGTGCGGG
129 ACGAGCGTGCGGG
23062827 TGCTCAACCG
Statistics
Matches: 236, Mismatches: 56, Indels: 21
0.75 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 59 0.25
158 54 0.23
159 118 0.50
160 4 0.02
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (155 bp):
GAGAGGCAGAATGCACAAGCCGGGGATCAACCCAATCCCCCCTGCGTGCTGTCGATCCTGCTCCT
AACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAATTCGTATGCCTAAGTCAACCCACAAAAC
GAGCGTGCGGGCGCTAAGCCGGCCA
Found at i:23063537 original size:157 final size:156
Alignment explanation
Indices: 23063151--23063546 Score: 377
Period size: 157 Copynumber: 2.5 Consensus size: 156
23063141 ACTCTGTATG
* *
23063151 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGAATCGAGCGTACGGGCGCTCAGCC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * ***
23063216 GGCCGAAGAGGCAGAATGCGCAAGTCGGGATCGGTCGGGTCCCCCCTGCGTACTGTCAATCTTGC
66 GACCGGAGAGGCAGAATGCGCAAGCCGGGATCAGCCGGGTCCCCCCTGCGTACTGTCAATCCCAC
* *
23063281 TACCGCAACCCTCAGTCTGATCCGAT
131 TACCACAACCCTCAGTCTGATCCGAC
* * * ** *
23063307 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGTAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA-GAAACGAGCGTGCGGGCGCTCAG
* * * * * * **
23063371 CC-AGTCGGAGAGGCATAAT-CGTAAGCCAGGGATCAGCCTGGTCCCCTCTGCGTGCTGTCGGTC
64 CCGA-CCGGAGAGGCAGAATGCGCAAGCC-GGGATCAGCCGGGTCCCCCCTGCGTACTGTCAATC
* * * * *
23063434 CCACTGCCACAACCCTCGGTCTG-GCTGGGC
127 CCACTACCACAACCCTCAGTCTGATC-CGAC
* * * * *
23063464 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-GAAACGAGCGTGCGGGCGCTCAGC
*
23063529 CGACCGGAGAGGTAGAAT
65 CGACCGGAGAGGCAGAAT
23063547 ACACAAGCTG
Statistics
Matches: 187, Mismatches: 46, Indels: 13
0.76 0.19 0.05
Matches are distributed among these distances:
155 1 0.01
156 43 0.23
157 141 0.75
158 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGAAACGAGCGTGCGGGCGCTCAGCC
GACCGGAGAGGCAGAATGCGCAAGCCGGGATCAGCCGGGTCCCCCCTGCGTACTGTCAATCCCAC
TACCACAACCCTCAGTCTGATCCGAC
Found at i:23063660 original size:26 final size:26
Alignment explanation
Indices: 23063622--23063674 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23063612 CCGGTCCGAT
23063622 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
23063648 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
23063674 C
1 C
23063675 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23063778 original size:184 final size:184
Alignment explanation
Indices: 23063464--23063825 Score: 512
Period size: 184 Copynumber: 2.0 Consensus size: 184
23063454 CTGGCTGGGC
* *
23063464 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGTGCTCAAC
* * * * * * * *
23063529 CGACCGGAGAGGTAGAATACACAAGCTGGGAATTGGCCCGGTCCTCCTTACGTGCTGTCGATCCT
66 CGACCAGAGAGGCAGAATACACAAACCGGGAATTGGCCCGATCCCCCCTACATGCTGTCGATCCT
** *
23063594 GCTGTCGGAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
131 GCTGTCACAACCCTCGGACCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
* ** *
23063648 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGTGCTCAAC
* *
23063713 CGGA-CAGAGAGGCAGAATACGCAAACCGCGG-ATTGGCCCGATCCCCCCTACATGCTGTTGATC
66 C-GACCAGAGAGGCAGAATACACAAACCG-GGAATTGGCCCGATCCCCCCTACATGCTGTCGATC
*
23063776 CTGCTGTCACAACCCTCGGACCGGTCCGATCTTAGATTGGGAATGAACTC
129 CTGCTGTCACAACCCTCGGACCGGTCCGATCTTAGACTGGGAATGAACTC
23063826 TGTACGCATA
Statistics
Matches: 156, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
184 152 0.97
185 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (184 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGTGCTCAAC
CGACCAGAGAGGCAGAATACACAAACCGGGAATTGGCCCGATCCCCCCTACATGCTGTCGATCCT
GCTGTCACAACCCTCGGACCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
Found at i:23064003 original size:159 final size:158
Alignment explanation
Indices: 23063647--23064031 Score: 391
Period size: 158 Copynumber: 2.4 Consensus size: 158
23063637 AACTCCATAT
*
23063647 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
* ** **
23063712 CCGGACAGAGAGGCAGAATACGCAAACCGCGGATTGGCCCGATCCCCCCTACATGCTGTTGATCC
66 CCGGACAAAGAGGCAGAATACGCAAACCAAGGATTGGCCCGATCCCCCCTACATGCTGCCGATCC
* * *
23063777 TGCTGTCACAACCCTCGGACCGGTCCGA
131 CGCTGTCACAACCCTCAGACCGCTCCGA
* * * * * * *
23063805 TCTTAGA-TTGGGAATGAACTCTGTACGCATAAGCCAACCCACGAAACGAGCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCA
* * * * * * * * * *
23063869 GTCGGCCAAAGAGGCATAATGCGCAAGCCAAGGATTGGCCCGGTCCTCCTCTGCGTGCTGCCGGT
65 GCCGGACAAAGAGGCAGAATACGCAAACCAAGGATTGGCCCGATCC-CCCCTACATGCTGCCGAT
* * * * *
23063934 CCCGTTG-CAACAACCCTTAGTCCAGCT-GGG
129 CCCGCTGTC-ACAACCCTCAGACC-GCTCCGA
* * *
23063964 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCTTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGCAGGCGCTCA
23064028 GCCG
65 GCCG
23064032 ACCGGAGAGG
Statistics
Matches: 179, Mismatches: 42, Indels: 11
0.77 0.18 0.05
Matches are distributed among these distances:
157 1 0.01
158 93 0.52
159 82 0.46
160 3 0.02
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
CCGGACAAAGAGGCAGAATACGCAAACCAAGGATTGGCCCGATCCCCCCTACATGCTGCCGATCC
CGCTGTCACAACCCTCAGACCGCTCCGA
Found at i:23064041 original size:159 final size:158
Alignment explanation
Indices: 23063647--23064047 Score: 389
Period size: 159 Copynumber: 2.5 Consensus size: 158
23063637 AACTCCATAT
*
23063647 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
** **
23063712 CCGGA-CAGAGAGGCAGAATACGCAAACCGCGGATTGGCCCGATCCCCCCTACATGCTGTTGATC
66 CC-GACCAGAGAGGCAGAATACGCAAACCAAGGATTGGCCCGATCCCCCCTACATGCTGCCGATC
* * *
23063776 CTGCTGTCACAACCCTCGGACCGGTCCGA
130 CCGCTGTCACAACCCTCAGACCGCTCCGA
* * * * * * *
23063805 TCTTAGA-TTGGGAATGAACTCTGTACGCATAAGCCAACCCACGAAACGAGCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCA
* * * * * * * * * * *
23063869 GTCGGCCAAAGAGGCATAATGCGCAAGCCAAGGATTGGCCCGGTCCTCCTCTGCGTGCTGCCGGT
65 GCCGACCAGAGAGGCAGAATACGCAAACCAAGGATTGGCCCGATCC-CCCCTACATGCTGCCGAT
* * * * *
23063934 CCCGTTG-CAACAACCCTTAGTCCAGCT-GGG
129 CCCGCTGTC-ACAACCCTCAGACC-GCTCCGA
* * *
23063964 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCTTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGCAGGCGCTCA
* *
23064028 GCCGACCGGAGAGGTAGAAT
65 GCCGACCAGAGAGGCAGAAT
23064048 GTGCAAGTCG
Statistics
Matches: 189, Mismatches: 47, Indels: 13
0.76 0.19 0.05
Matches are distributed among these distances:
157 2 0.01
158 91 0.48
159 93 0.49
160 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
CCGACCAGAGAGGCAGAATACGCAAACCAAGGATTGGCCCGATCCCCCCTACATGCTGCCGATCC
CGCTGTCACAACCCTCAGACCGCTCCGA
Found at i:23064199 original size:490 final size:491
Alignment explanation
Indices: 23063096--23064217 Score: 1308
Period size: 490 Copynumber: 2.3 Consensus size: 491
23063086 CTGCTGGCCT
* * **
23063096 TGCTGTCGCAACCCTCGATTCGATCCGATCTTAGACT-AGAAATGAACTCTGTATGCTTAGACAT
1 TGCTGTCGCAACCCTCGGTTCGGTCCGATCTTAGACTGAG-AATGAACTCCATATGCTTAGACAT
* * * *
23063160 GGAATGAACTCCGTATGCCTAAGCCAACCCA-GAATCGAGCGTACGGGCGCTCAGCCGGCCGAAG
65 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCAG-AG
* ** * * * * * * *
23063224 AGGCAGAATGCGCAAGTCGGGATCGGTCGGGTCCCCCCTGCGTACTGTCAATCTTGCTACCGCAA
129 AGGCAGAATACGCAAACCGGGATCGGCCCGATCCCCCCTACATACTGTCAATCCTGCTACCACAA
* * * * * * *
23063289 CCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATG
194 CCCTCAGACCGATCCGATCTTAGACTGGGAATGAACTCTGTACGCATAAGCCAACCCACGAAACG
* * ** * * *
23063354 AGCGTGTAGGCGCTGAGCCAGTCGGAGAGGCATAATCGTAAGCCAGGGATCAGCCTGGTCCCCTC
259 AGCGTGCAGGCGCTGAGCCAGCCAAAGAGGCATAATCGCAAGCCAAGGATCAGCCCGGTCCCCTC
* * * **
23063419 TGCGTGCTGTCGGTCCCACTGCCACAACCCTCGGTCTGGCTGGGCCTTAGACATGGAATGAACTC
324 TGCGTGCTGCCGGTCCCACTGCAACAACCCTCAGTCCAGCTGGGCCTTAGACATGGAATGAACTC
* *
23063484 CCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAACCGACCGGAGAGGTAGAATAC
389 CCTATGCCTAAGCCAACCCACAAAACAGGCGTGCGGGCGCTCAACCGACCGGAGAGGTAGAATAC
* * * *
23063549 ACAAGCTGGGAATTGGCCCGGTCCTCCTTACGTGCTGTCGATCC
454 ACAAGCTGGGAATT---CCAG-CCT-CGTA-GTGCTGCCGATCA
* * *
23063593 TGCTGTCGGAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATG
1 TGCTGTCGCAACCCTCGGTTCGGTCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACATG
*
23063658 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAGCCGGACAGAGA
66 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGG-CAGAGA
* * ** **
23063723 GGCAGAATACGCAAACCGCGGATTGGCCCGATCCCCCCTACATGCTGTTGATCCTGCTGTCACAA
130 GGCAGAATACGCAAACCG-GGATCGGCCCGATCCCCCCTACATACTGTCAATCCTGCTACCACAA
* * *
23063788 CCCTCGGACCGGTCCGATCTTAGATTGGGAATGAACTCTGTACGCATAAGCCAACCCACGAAACG
194 CCCTCAGACCGATCCGATCTTAGACTGGGAATGAACTCTGTACGCATAAGCCAACCCACGAAACG
* * **
23063853 AGCGTGCAGGCGCTGAGTCGGCCAAAGAGGCATAATGCGCAAGCCAAGGATTGGCCCGGTCCTCC
259 AGCGTGCAGGCGCTGAGCCAGCCAAAGAGGCATAAT-CGCAAGCCAAGGATCAGCCCGGTCC-CC
** * *
23063918 TCTGCGTGCTGCCGGTCCCGTTGCAACAACCCTTAGTCCAGCTGGGGCTTAGACATGGAATGAAC
322 TCTGCGTGCTGCCGGTCCCACTGCAACAACCCTCAGTCCAGCTGGGCCTTAGACATGGAATGAAC
** * *
23063983 TCCCTATGCCTAAGCCAACCCATGAAACAGGCTTGCGGGCGCTCAGCCGACCGGAGAGGTAGAAT
387 TCCCTATGCCTAAGCCAACCCACAAAACAGGCGTGCGGGCGCTCAACCGACCGGAGAGGTAGAAT
*** *
23064048 GTGCAAG-TCGGGGA-T-CAG-CT-GT-GTGCTGCCGATCA
452 ACACAAGCT-GGGAATTCCAGCCTCGTAGTGCTGCCGATCA
* * *
23064083 TGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGAGAATGAACTCCATACGCTTAGAC-TG
1 TGCTGTCGCAACCCTCGGTTCGGTCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACAT-
* * * * * * *
23064147 GGGATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAGCGTGTGGGTGCTCAGTCGGTCGGAG
65 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGG-CAGAG
23064212 AGGCAG
129 AGGCAG
23064218 GCTGGAGAGG
Statistics
Matches: 530, Mismatches: 87, Indels: 23
0.83 0.14 0.04
Matches are distributed among these distances:
489 1 0.00
490 129 0.24
492 1 0.00
494 2 0.00
496 2 0.00
497 86 0.16
498 42 0.08
499 120 0.23
500 22 0.04
501 125 0.24
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (491 bp):
TGCTGTCGCAACCCTCGGTTCGGTCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACATG
GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCAGAGAG
GCAGAATACGCAAACCGGGATCGGCCCGATCCCCCCTACATACTGTCAATCCTGCTACCACAACC
CTCAGACCGATCCGATCTTAGACTGGGAATGAACTCTGTACGCATAAGCCAACCCACGAAACGAG
CGTGCAGGCGCTGAGCCAGCCAAAGAGGCATAATCGCAAGCCAAGGATCAGCCCGGTCCCCTCTG
CGTGCTGCCGGTCCCACTGCAACAACCCTCAGTCCAGCTGGGCCTTAGACATGGAATGAACTCCC
TATGCCTAAGCCAACCCACAAAACAGGCGTGCGGGCGCTCAACCGACCGGAGAGGTAGAATACAC
AAGCTGGGAATTCCAGCCTCGTAGTGCTGCCGATCA
Found at i:23064531 original size:26 final size:26
Alignment explanation
Indices: 23064480--23064532 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23064470 CCGGTCTGAT
* *
23064480 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
23064506 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
23064532 C
1 C
23064533 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:23065256 original size:26 final size:26
Alignment explanation
Indices: 23065220--23065272 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23065210 CTGGTCTGAT
23065220 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23065246 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23065272 C
1 C
23065273 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23065835 original size:159 final size:157
Alignment explanation
Indices: 23065407--23065843 Score: 407
Period size: 159 Copynumber: 2.8 Consensus size: 157
23065397 GTCCTGCTGC
* * *
23065407 CACAACCCTCGGTCCGGCTGGGGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG
1 CACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG
* * * * * * *
23065472 AAACAAGCGTGCAGGTGCTCAACCGGA-CAGAGAGGCAGAATACGCAAGTCATGGATTAGCTCGG
66 AAACGAGCGTGCAGGTGCTCAGCC-GACCGGAGAGGCAGAATGCGCAAGCCAGGGATTAGCCCGG
*** * *
23065536 TCCTCCTACGTGCTGTTGATCCTACTGT
130 TCCTCCTACGTGCTACCGATCCCACTGA
* * ** ** * *
23065564 CGCAACCCTCAGACCGGTCCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
1 CACAACCCTCAGTCCGGTTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * * * * * *
23065628 GAAACGAGTGTACAGGTGTTGAGTC-AGCCGAAGAGGCATAATGCGCAAGCCAGGGATTGGCCCG
65 GAAACGAGCGTGCAGGTGCTCAGCCGA-CCGGAGAGGCAGAATGCGCAAGCCAGGGATTAGCCCG
* * *
23065692 GTCCTCCTCTGCGTGCTACCGGTCCCGCT-A
129 GTCCT-C-CTACGTGCTACCGATCCCACTGA
*
23065722 CAACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 C-ACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * * * *
23065787 GAAACGGGCATGCGGGCGCTCAGCCGACCGGAGAGGTC-GAATGTGCAAGCCGGGGAT
65 GAAACGAGCGTGCAGGTGCTCAGCCGACCGGAGAGG-CAGAATGCGCAAGCCAGGGAT
23065844 CAGCTGTGTG
Statistics
Matches: 215, Mismatches: 56, Indels: 16
0.75 0.20 0.06
Matches are distributed among these distances:
155 1 0.00
156 1 0.00
157 102 0.47
158 2 0.01
159 106 0.49
160 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (157 bp):
CACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG
AAACGAGCGTGCAGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATTAGCCCGGT
CCTCCTACGTGCTACCGATCCCACTGA
Found at i:23066277 original size:26 final size:26
Alignment explanation
Indices: 23066248--23066300 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23066238 CCGGTCTGAT
* *
23066248 CTTAGAC-TGGGAATGATCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCCTATG
23066274 CTTAGACATGGAATGAACTCCCTATG
1 CTTAGACATGGAATGAACTCCCTATG
23066300 C
1 C
23066301 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCCTATG
Found at i:23066437 original size:26 final size:26
Alignment explanation
Indices: 23066386--23066438 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23066376 CTGGTTTGAT
* *
23066386 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
23066412 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
23066438 C
1 C
23066439 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:23066442 original size:138 final size:138
Alignment explanation
Indices: 23066194--23066468 Score: 496
Period size: 138 Copynumber: 2.0 Consensus size: 138
23066184 GGATCAGCCC
23066194 GATCCCCCCTGCGTGCTACCGATCCTACTGTCACAATCCTCGATCCGGTCTGATCTTAGACTGGG
1 GATCCCCCCTGCGTGCTACCGATCCTACTGTCACAATCCTCGATCCGGTCTGATCTTAGACTGGG
*
23066259 AATGATCTCCGTATGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAAC
66 AATGAACTCCGTATGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAAC
23066324 GTGCTGGT
131 GTGCTGGT
* * * *
23066332 GATCCCCCCTGCGTGCTGCCGATCCTACTGTCACAATCCTCGGTCTGGTTTGATCTTAGACTGGG
1 GATCCCCCCTGCGTGCTACCGATCCTACTGTCACAATCCTCGATCCGGTCTGATCTTAGACTGGG
*
23066397 AATGAACTTCGTATGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAAC
66 AATGAACTCCGTATGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAAC
23066462 GTGCTGG
131 GTGCTGG
23066469 CGCTCAGCCA
Statistics
Matches: 131, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
138 131 1.00
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (138 bp):
GATCCCCCCTGCGTGCTACCGATCCTACTGTCACAATCCTCGATCCGGTCTGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAAC
GTGCTGGT
Found at i:23067169 original size:26 final size:26
Alignment explanation
Indices: 23067128--23067180 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23067118 CTGGTCTGAT
23067128 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
23067154 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
23067180 C
1 C
23067181 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:23067547 original size:26 final size:26
Alignment explanation
Indices: 23067507--23067559 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23067497 TCGGTCTGAT
23067507 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
23067533 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
23067559 C
1 C
23067560 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:23067924 original size:158 final size:158
Alignment explanation
Indices: 23067532--23067938 Score: 455
Period size: 157 Copynumber: 2.6 Consensus size: 158
23067522 AACTCCGTAT
* * * *
23067532 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATCGAGCGTGCATGTGCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * * *
23067597 CCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCGGGTCCCCCTTACGTACTGTCGATCC
66 CCGACCGGAGAGGCAGAATACGCAAGCCGAGGATCGACCCGATCCCCCTTACGTACTGTCGATCC
* * *
23067662 TACTACCGCAACCCTCGGTCTGGTCCGA
131 CACTACCACAACCCTCGGTCCGGTCCGA
* * * * * * *
23067690 TCTTAGAC-TGGAATGAACT-CTGTATGCCTAAGTCAACCCATGAAACGAGCATGCCGGCGTTGA
1 GCTTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * * * * *
23067753 GCTGATCGGAGAGGCATAAT-CGCAAGCCGAGGATC-AGCCCGATCCCCCTCTGCGTGCTGTCGG
65 GCCGACCGGAGAGGCAGAATACGCAAGCCGAGGATCGA-CCCGATCCCCCT-TACGTACTGTCGA
* *
23067816 TCCCACTACCACAACCCTCGGTCCGG-CTGGG
128 TCCCACTACCACAACCCTCGGTCCGGTC-CGA
* *
23067847 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* *
23067912 CCGACCAGAGAGGTAGAATACGCAAGC
66 CCGACCGGAGAGGCAGAATACGCAAGC
23067939 TGGGAATTGG
Statistics
Matches: 202, Mismatches: 40, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
155 1 0.00
156 24 0.12
157 101 0.50
158 67 0.33
159 9 0.04
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCGACCGGAGAGGCAGAATACGCAAGCCGAGGATCGACCCGATCCCCCTTACGTACTGTCGATCC
CACTACCACAACCCTCGGTCCGGTCCGA
Found at i:23067964 original size:158 final size:155
Alignment explanation
Indices: 23067532--23068032 Score: 461
Period size: 158 Copynumber: 3.2 Consensus size: 155
23067522 AACTCCGTAT
* * * *
23067532 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATCGAGCGTGCATGTGCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * *
23067597 CCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCGGGTCCCCCTTACGTACTGTCGATCC
66 CCGACCGGAGAGGCAGAAT-CGCAAG-CTGGGATCGGCCCGGTCCCCC-TGCGTACTGTCGATCC
* * *
23067662 TACTACCGCAACCCTCGGTCTGGTCCGA
128 CACTACCACAACCCTCGGTCCGGTCCGA
* * * * * * *
23067690 TCTTAGAC-TGGAATGAACT-CTGTATGCCTAAGTCAACCCATGAAACGAGCATGCCGGCGTTGA
1 GCTTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * * * * * * *
23067753 GCTGATCGGAGAGGCATAATCGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGGTC
65 GCCGACCGGAGAGGCAGAATCGCAAGCTG-GGATCGGCCCGGT-CCCC-CTGCGTACTGTCGATC
* *
23067818 CCACTACCACAACCCTCGGTCCGG-CTGGG
127 CCACTACCACAACCCTCGGTCCGGTC-CGA
* *
23067847 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * *
23067912 CCGACCAGAGAGGTAGAATACGCAAGCTGGGAATTGGCCCGGTCCTCCCTGCGTACTGTCGTTCC
66 CCGACCGGAGAGGCAGAAT-CGCAAGCTGGG-ATCGGCCCGGTCC-CCCTGCGTACTGTCGATCC
** ** ** * *
23067977 TGCTGTCGGAACCCTCGGTCCAGTCTGA
128 CACTACCACAACCCTCGGTCCGGTCCGA
* *
23068005 TCTTAGAC-TGAGAATGAACTCCGTATGC
1 GCTTAGACATG-GAATGAACTCCTTATGC
23068033 TTAGACATTG
Statistics
Matches: 273, Mismatches: 58, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
155 2 0.01
156 16 0.06
157 107 0.39
158 127 0.47
159 21 0.08
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCGACCGGAGAGGCAGAATCGCAAGCTGGGATCGGCCCGGTCCCCCTGCGTACTGTCGATCCCAC
TACCACAACCCTCGGTCCGGTCCGA
Found at i:23068164 original size:184 final size:184
Alignment explanation
Indices: 23067847--23068209 Score: 437
Period size: 184 Copynumber: 2.0 Consensus size: 184
23067837 TCCGGCTGGG
* * * * *
23067847 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
* ** * * * *
23067912 CCGACCAGAGAGGTAGAATACGCAAGCTGGGAATTGGCCCGGTCCTCCCTGCGTACTGTCGTTCC
66 CCGACCAGAGAGGCAGAATACGCAAGCACGGAATTGGCCCGATCCTCCCTACGTACTATCGATCC
* * * *
23067977 TGCTGTCGGAACCCTCGGTCCAGTCTGATCTTAGACT-GAGAATGAACTCCGTAT
131 TGCTGTCGCAACCCTCAGACCAGTCCGATCTTAGACTAG-GAATGAACTCCGTAT
* * * * *
23068031 GCTTAGACATTGAATGAACTCCGTATACCTAAGCTAACCCATGAAACGAGTGTGCAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
* * *
23068096 CCGGA-CAGAGAGGCAGAATACGCAAGCCACGG-ATTGGCCTGATCC-CTCTTACGTGCTATCGA
66 CC-GACCAGAGAGGCAGAATACGCAAG-CACGGAATTGGCCCGATCCTC-CCTACGTACTATCGA
*
23068158 TCCTGCTGTTGCAACCCTCAGACCAGTCCGATCTTAGACTAGGAATGAACTC
128 TCCTGCTGTCGCAACCCTCAGACCAGTCCGATCTTAGACTAGGAATGAACTC
23068210 TGTACGCATA
Statistics
Matches: 150, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
183 1 0.01
184 143 0.95
185 6 0.04
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
CCGACCAGAGAGGCAGAATACGCAAGCACGGAATTGGCCCGATCCTCCCTACGTACTATCGATCC
TGCTGTCGCAACCCTCAGACCAGTCCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:23068494 original size:501 final size:497
Alignment explanation
Indices: 23067311--23068610 Score: 1410
Period size: 501 Copynumber: 2.6 Consensus size: 497
23067301 GTCGGTCCTG
* * * *
23067311 CTACCACAACCATCGGTCCGGCTGGGGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTACAACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * *
23067376 CACAAAACGAGCGTACGGTG-CTCAACCGATCGAAGAGGCAGAATGCGTAAGCTGGGGATCAGCT
66 CACGAAACGAGCGTGCGG-GCCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGC-
* * * * * * * * *
23067440 CGATCTCCCCTGCAAGCTGCCAATCCTACTACTGGTCTTACTGCCGCAACCCTCGGTTCGGTCTG
129 CCA-GTCCCC--C---CT--C---CGTACTACCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTG
*
23067505 ATCTTAGACTGGAAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
183 ATCTTAGACTGG-AATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAAC
* * * * * * **
23067570 CCACGAATCGAGCGTGCATGTGCTCAGCC-GACCGGAGAGGCAGAATGCACAAGTCGGGGATCGA
247 CCATGAAACGAGCGTGCAGGTGCTCAGCCGGA-CAGAGAGGCAGAATACACAAGCCACGGATCGA
* * * * **
23067634 CCGGGTCCCCCTTACGTACTGTCGATCCTACTACCGCAACCCTCGGTCTGGTCCGATCTTAGACT
311 CCGGATCCCCCTTACGTACTATCGATCCTACTACCGCAACCCTCAGACCAGTCCGATCTTAGACT
* * * * ** *
23067699 GGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCATGCCGGCGTTGAGCTGATCGGAG
376 GGAATGAACTCTGTACGCATAAGTCAACCCACGAAACGAGCATGCAGGCACTGAGCTGATCGAAG
* * **
23067764 AGGCATAATCGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCA
441 AGGCATAATCGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCATACTACCGGTCCCA
* *
23067821 CTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACC
1 CTACAACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * **
23067886 CACGAAACGGGCGTGCGGGCGCTCAGCCGACCAGAGAGGTAGAATACGCAAGCTGGGAATTGGCC
66 CACGAAACGAGCGTGCGGGC-CTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCC
* * * ** * * *
23067951 CGGTCCTCCCTGCGTACTGTCGTTCCTGCTG-TCGGAACCCTCGGTCCAGTCTGATCTTAGACTG
130 CAGTCCCCCCTCCGTACTACCGATCCTGCTGCT-GCAACCCTCGGTCCGGTCTGATCTTAGACTG
* *
23068015 AGAATGAACTCCGTATGCTTAGACATTGAATGAACTCCGTATACCTAAGCTAACCCATGAAACGA
194 -GAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGA
* * * * * * *
23068080 GTGTGCAGGTGCTCAACCGGACAGAGAGGCAGAATACGCAAGCCACGGATTGGCCTGATCCCTCT
258 GCGTGCAGGTGCTCAGCCGGACAGAGAGGCAGAATACACAAGCCACGGATCGACCGGATCCCCCT
* * ***
23068145 TACGTGCTATCGATCCTGCTGTTGCAACCCTCAGACCAGTCCGATCTTAGACTAGGAATGAACTC
323 TACGTACTATCGATCCTACTACCGCAACCCTCAGACCAGTCCGATCTTAGACT-GGAATGAACTC
* *
23068210 TGTACGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACTGAG-TCGGTCGAAGAGGCATAATG
387 TGTACGCATAAGTCAACCCACGAAACGAGCATGCAGGCACTGAGCT-GATCGAAGAGGCATAAT-
* ** * *
23068274 CGCAAGCC-AGGGAT-TGACCCGATCCCTTTTTGCATACTACCGGTCCCG
450 CGCAAGCCGA-GGATCAG-CCCGATCCCCCTCTGCATACTACCGGTCCCA
* * *
23068322 CTGCAACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTACAACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * *
23068387 CACGAAACGAGCGTGCGGGCACTCCGCCGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCC
66 CACGAAACGAGCGTGCGGGC-CTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCC
* * *
23068452 CAGTCCCCCCTCCGTGCTACCGATCCTGCTGCTGTAACCCTCGGTCTGGTCTGATCTTAGACTGG
130 CAGTCCCCCCTCCGTACTACCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACT-G
* * *
23068517 GAATGAACTCCATACGCTTAGA-ATGGGGATGAACTCCGTATGCCTAAG-TCAACCCATGAAACG
194 GAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCATGAAACG
* * * *
23068580 AGCGTGCGGGCGCTTAGCCGGTCAGAGAGGC
257 AGCGTGCAGGTGCTCAGCCGGACAGAGAGGC
23068611 CGATTGGAGA
Statistics
Matches: 660, Mismatches: 116, Indels: 37
0.81 0.14 0.05
Matches are distributed among these distances:
499 190 0.29
500 71 0.11
501 278 0.42
502 2 0.00
504 2 0.00
507 1 0.00
509 5 0.01
510 78 0.12
511 33 0.05
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (497 bp):
CTACAACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGAGCGTGCGGGCCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCC
AGTCCCCCCTCCGTACTACCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGA
ATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCG
TGCAGGTGCTCAGCCGGACAGAGAGGCAGAATACACAAGCCACGGATCGACCGGATCCCCCTTAC
GTACTATCGATCCTACTACCGCAACCCTCAGACCAGTCCGATCTTAGACTGGAATGAACTCTGTA
CGCATAAGTCAACCCACGAAACGAGCATGCAGGCACTGAGCTGATCGAAGAGGCATAATCGCAAG
CCGAGGATCAGCCCGATCCCCCTCTGCATACTACCGGTCCCA
Found at i:23068926 original size:26 final size:26
Alignment explanation
Indices: 23068875--23068927 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23068865 CCGGTCCAGT
**
23068875 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
23068901 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
23068927 C
1 C
23068928 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:23069021 original size:176 final size:180
Alignment explanation
Indices: 23068716--23069080 Score: 426
Period size: 176 Copynumber: 2.0 Consensus size: 180
23068706 TCCAGCTAGG
*
23068716 GCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCAC-AAACGAGCGTGC--G-GCTCAG
* * ** * * *
23068781 CCGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGGTTCGATCCCCCCTGCGTGCTGTCGATCC
62 CCGGCCAGAGAGGCAGAATGCGCAAGCAGAGGATCAGCCCGATCCCCACTACGTGCTATCGATCC
* * * *
23068846 TGCTA-TCGTAATCCTC-AGTCCGGTCCAG-TCTTAGACTGGGAATGAACTCTGTAT
127 TGCTACT-GCAACCCTCGAG-CCGGT-CAGATCTTAGACTGGGAATAAACTCTGGAT
* *
23068900 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA-CC-C-AACGTGC-TGAC-GCTCAGCCG
1 GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACAAACGAGCGTG-CGGCTCAGCCG
23068960 GCCAGAGAGGCAGAATGCGCAAGCTAG-GGATCAGCCC-AGTCCCCACTACGTGCTATCGATCCT
65 GCCAGAGAGGCAGAATGCGCAAGC-AGAGGATCAGCCCGA-TCCCCACTACGTGCTATCGATCCT
* *
23069023 GCTACTGCAACCCTCGAGCTGGTCTGATCTTAGACTGGGAATAAACTCTGGAT
128 GCTACTGCAACCCTCGAGCCGGTCAGATCTTAGACTGGGAATAAACTCTGGAT
23069076 GCTTA
1 GCTTA
23069081 ATTCAGCCCA
Statistics
Matches: 159, Mismatches: 16, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
175 3 0.02
176 105 0.66
177 4 0.03
179 2 0.01
180 7 0.04
182 1 0.01
183 2 0.01
184 35 0.22
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (180 bp):
GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACAAACGAGCGTGCGGCTCAGCCGG
CCAGAGAGGCAGAATGCGCAAGCAGAGGATCAGCCCGATCCCCACTACGTGCTATCGATCCTGCT
ACTGCAACCCTCGAGCCGGTCAGATCTTAGACTGGGAATAAACTCTGGAT
Found at i:23069418 original size:26 final size:26
Alignment explanation
Indices: 23069367--23069419 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23069357 CCGGTCCGAT
**
23069367 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
23069393 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
23069419 C
1 C
23069420 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23070479 original size:159 final size:158
Alignment explanation
Indices: 23070124--23070507 Score: 375
Period size: 158 Copynumber: 2.4 Consensus size: 158
23070114 AACTCCGTAT
* * *
23070124 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCAA
* * * * * *
23070189 CCGGTCAGAGAGATTGAATGCACAAGCCAAGGATTAGCCCGATTCCCCTTGCGTGCTGTTGATCC
66 CCGATCAGAGAGATTGAATGCACAAGCCAAGGATCAACCCGATCCCCCTTGCATGCTGTCGATCC
* * * **
23070254 TGCTGCCACAACCCTTGGTTCGGTCCGA
131 CGCTACCACAACCCTCGGTTCGAACCGA
* ** * *
23070282 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTCCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCA
* * ** * *
23070346 GCCGATCAGAGAGGCA-T-AATGCGCAAGCCGGGGATCAACCTGGTCCCCCTCT-CTATGCTGTC
65 ACCGATCAGAGA-G-ATTGAATGCACAAGCCAAGGATCAACCCGATCCCCCT-TGC-ATGCTGTC
* * * *
23070408 GGTCCCGCTACCACAACCGTCGG-TCGAACTGGG
126 GATCCCGCTACCACAACCCTCGGTTCGAAC-CGA
* * *
23070441 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGCGGACGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAG-CGTCCGGGCGCTCA
23070505 ACC
65 ACC
23070508 TACCGGAGAG
Statistics
Matches: 181, Mismatches: 37, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
157 1 0.01
158 95 0.52
159 83 0.46
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCAA
CCGATCAGAGAGATTGAATGCACAAGCCAAGGATCAACCCGATCCCCCTTGCATGCTGTCGATCC
CGCTACCACAACCCTCGGTTCGAACCGA
Found at i:23071458 original size:26 final size:26
Alignment explanation
Indices: 23071409--23071459 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
23071399 AGTCTGATCA
**
23071409 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
* *
23071435 TAGATTGGGGATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
23071460 CTAAGCCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:23071779 original size:26 final size:26
Alignment explanation
Indices: 23071750--23071802 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23071740 CCGATTTGAT
*
23071750 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
23071776 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
23071802 C
1 C
23071803 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:23072158 original size:26 final size:26
Alignment explanation
Indices: 23072129--23072180 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23072119 TCCGGTCTGA
23072129 TCTTAAAC-TGGGAATGAACTCCGTAT
1 TCTTAAACAT-GGAATGAACTCCGTAT
*
23072155 TCTTAGACATGGAATGAACTCCGTAT
1 TCTTAAACATGGAATGAACTCCGTAT
23072181 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (26 bp):
TCTTAAACATGGAATGAACTCCGTAT
Found at i:23072998 original size:26 final size:26
Alignment explanation
Indices: 23072960--23073012 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23072950 TGGCTCAAAT
23072960 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23072986 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23073012 C
1 C
23073013 CTAACCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23073386 original size:158 final size:155
Alignment explanation
Indices: 23072985--23073446 Score: 397
Period size: 158 Copynumber: 2.9 Consensus size: 155
23072975 AACTCCGTAT
*
23072985 GCTTAGACATGGAATGAACTCCGTATGCCTAACCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAA-GCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * **
23073050 TCGACCAGAGAGGTAGAATACGCAAGTCAGGGATCAGCCCAGTGCCCCCTGCGTGCTGTCGATCC
65 CCGGCCAGAGAGGTAGAATGCGCAAG-CAGGGATCGGCCCGGT-CCCCCTGCGTGCTACCGATCC
** ** * * *
23073115 TGCTGCTGCAACCCTTGGTCCGGTCCAA
128 CACTGCCACAACCCTCGATCCAGTCCAA
* * * * * * * *
23073143 TCTTAGAC-TGGGAATGAACTCCGTAGGCCTAAGTCGACCCATGAAACGAGCCTGCTGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
23073207 GCCGGTCGGAGAGGCAAAATGCGCAAGCAGAGGATCGGCTCGGTCCCCCTCTCTGTGCTACCGGT
64 GCCGGCCAGAGAGGTAGAATGCGCAAGCAG-GGATCGGCCCGGTCCCCCT-GC-GTGCTACCGAT
* *
23073272 CCCACTGCCACAACCCTCGATCCAGT-TAGG
126 CCCACTGCCACAACCCTCGATCCAGTCCA-A
* * * * *
23073302 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCTACCCACGAAACGGGTGTGGGGGCGCTCAGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
23073367 CGGCCAGAGAGATAGAATGCACAAATCGGGGATCGGCCCGGTCCCCCTTACGTGCTATCGATTCT
66 CGGCCAGAGAGGTAGAATGCGC-AAGCAGGGATCGGCCCGGTCCCCC-TGCGTGCTACCGATCCC
*
23073432 GCTGCCACAACCCTC
129 ACTGCCACAACCCTC
23073447 TGTCCAATCT
Statistics
Matches: 236, Mismatches: 59, Indels: 19
0.75 0.19 0.06
Matches are distributed among these distances:
157 34 0.14
158 141 0.60
159 60 0.25
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGAGGTAGAATGCGCAAGCAGGGATCGGCCCGGTCCCCCTGCGTGCTACCGATCCCAC
TGCCACAACCCTCGATCCAGTCCAA
Found at i:23073489 original size:26 final size:26
Alignment explanation
Indices: 23073460--23073512 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23073450 CCAATCTGAT
* * *
23073460 CTTAGACTGGGAATGAGCTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
23073486 CTTAGACAGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
23073512 C
1 C
23073513 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:23074017 original size:26 final size:26
Alignment explanation
Indices: 23073981--23074033 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23073971 CCAGTCTGAT
*
23073981 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
23074007 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
23074033 C
1 C
23074034 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23075075 original size:158 final size:158
Alignment explanation
Indices: 23074785--23075523 Score: 593
Period size: 159 Copynumber: 4.7 Consensus size: 158
23074775 CATAGATTGT
* * * * * *
23074785 GAATGAACTTCGTATGCCTAAACCAATCCATGAAACGAGCGTACGGGCGCTCAGCCGATC-AGAG
1 GAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGAGCACTGAGCCGACCGA-AG
* * * * * * * * *
23074849 AGGTAGAAAGCACAAGCCGAGGA-CCAGCCCGGTCCCCCCTACGTACTGTCGATCCTGTTGCCGC
65 AGGCAGAATGCGCAAGCCGAGGATCGA-CTCGGTCCCCCCTATGTGCTGTCGATCCTGCTACCGC
* * *
23074913 AACCCTCAGTCCGATCT-GATCTTAGATTGG
129 AACCCTCGGTCCGA-CTGGAGCTTAGAATGG
* * * *
23074943 GAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGAGCACTGAGCCGATCGGAGA
1 GAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGAGCACTGAGCCGACCGAAGA
* *
23075008 GGCAGAATGCGCAAGCCGAGGATCGACTCGGTCCCCCCTATGTGCTGTCGATCCTGCTATCGTAA
66 GGCAGAATGCGCAAGCCGAGGATCGACTCGGTCCCCCCTATGTGCTGTCGATCCTGCTACCGCAA
* * * *
23075073 CCCTTGATCCGATCT-GATCTTAGACTGG
131 CCCTCGGTCCGA-CTGGAGCTTAGAATGG
* * * * * * * *
23075101 GAATGAATTTCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCC-AGCCGAAG
1 GAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGAGCACTGAGCCGA-CCGAAG
* * * * * **
23075165 AGGCATAATGCGCAAGTCGAGGATCGACCCAGT-CCCCCTCTGCATGCTGTC-AGTCCCACTACC
65 AGGCAGAATGCGCAAGCCGAGGATCGACTCGGTCCCCCCTATG--TGCTGTCGA-TCCTGCTACC
* *
23075228 ACAACCCTCGGTCCGACTGGGGCTTAGACAT-G
127 GCAACCCTCGGTCCGACTGGAGCTTAGA-ATGG
* * * * * ** * * *
23075260 GAATGAACTGCCTATGCCTAAGCCAACCCACGAAATGGGCGTACTTGCACTGATCCGGCTGAAGA
1 GAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGAGCACTGAGCCGACCGAAGA
* * * * * *
23075325 GGCATAATGCGCAAGCCGGGGATCGGCTCGGT-CCCCCTATGCGTGCTGTCGGTCCCT-CTGCCA
66 GGCAGAATGCGCAAGCCGAGGATCGACTCGGTCCCCCCTAT--GTGCTGTCGAT-CCTGCTACCG
* *
23075388 CGACCCTCGGTCCGACTGGGGCTTAGACAT-G
128 CAACCCTCGGTCCGACTGGAGCTTAGA-ATGG
** * * * ** * *
23075419 GAACAAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCA-AAAGGCTGGCCGAAG
1 GAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGAGCACTGA-GCCGACCGAAG
* * *
23075483 AGGCAGAATGCGTAAGCCGGGGATCAACTCGGTCCCCCCTA
65 AGGCAGAATGCGCAAGCCGAGGATCGACTCGGTCCCCCCTA
23075524 CATGTTGTAG
Statistics
Matches: 478, Mismatches: 88, Indels: 28
0.80 0.15 0.05
Matches are distributed among these distances:
157 9 0.02
158 217 0.45
159 241 0.50
160 10 0.02
161 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGAGCACTGAGCCGACCGAAGA
GGCAGAATGCGCAAGCCGAGGATCGACTCGGTCCCCCCTATGTGCTGTCGATCCTGCTACCGCAA
CCCTCGGTCCGACTGGAGCTTAGAATGG
Found at i:23076116 original size:26 final size:26
Alignment explanation
Indices: 23076080--23076132 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
23076070 CCAGTCCAAT
23076080 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
23076106 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
23076132 C
1 C
23076133 CCAAGTCCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:23076502 original size:26 final size:26
Alignment explanation
Indices: 23076461--23076513 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23076451 CCTATCTGAT
*
23076461 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
23076487 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
23076513 C
1 C
23076514 CTATGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23077199 original size:26 final size:26
Alignment explanation
Indices: 23077170--23077222 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23077160 CCAGTCCGAT
23077170 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23077196 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23077222 C
1 C
23077223 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23077318 original size:195 final size:195
Alignment explanation
Indices: 23076948--23077329 Score: 541
Period size: 195 Copynumber: 2.0 Consensus size: 195
23076938 GTCGATCGTA
* ** * *
23076948 CTGCCGCAACCCTCGGTCCAGTTCGATCTTAGGTTGGGATTGAACTCCGTATGCTTAGACTGGGA
1 CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAA
* * * *
23077013 TGAACTCCGTGTGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGCCGACTAGAGAGGC
66 TGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTAAGCCGACCAGAGAGGC
* * ** * * *
23077078 AAAATGCACAAGTCGGGGATCAGTTTAGTCCCCCCTGCGTGCTGTCGATCCTGCTACTGGACCTG
131 AAAATGCACAAGCCGGGGACCAGTCCAATCCCCCCTGCATGCTGTCGATCCTACTACTGGACCTG
23077143 CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGA
1 CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGA
* * * *
23077208 ATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGC-TACGGGCGCTCAGCTGACCGGAGAGG
65 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTAAGCCGACCAGAGAGG
* * *
23077272 CAAAATGCGCAAGCCGGGGACCGGTCCAATCCTCCCTGCATGCTGTCGATCCTACTAC
130 CAAAATGCACAAGCCGGGGACCAGTCCAATCCCCCCTGCATGCTGTCGATCCTACTAC
23077330 CATAACCCTC
Statistics
Matches: 163, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
195 125 0.77
196 38 0.23
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (195 bp):
CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAA
TGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTAAGCCGACCAGAGAGGC
AAAATGCACAAGCCGGGGACCAGTCCAATCCCCCCTGCATGCTGTCGATCCTACTACTGGACCTG
Found at i:23077699 original size:26 final size:26
Alignment explanation
Indices: 23077670--23077720 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
23077660 CGGTCTAATC
*
23077670 TTAGACTGGGAATTAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
* *
23077696 TTAGACTGGGGATGAACTCTGTATG
1 TTAGACTGGGAATGAACTCCGTATG
23077721 CCCAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:23078079 original size:26 final size:26
Alignment explanation
Indices: 23078050--23078102 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23078040 CCGGTCCGAT
23078050 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
23078076 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23078102 C
1 C
23078103 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23078515 original size:158 final size:157
Alignment explanation
Indices: 23078247--23078589 Score: 404
Period size: 158 Copynumber: 2.2 Consensus size: 157
23078237 CCAGCTAGGG
* *
23078247 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
23078312 CGGTCGGAGAGGCAGAAAGCGTAAGCCGGGGACCAGCCCAGTCCCCCCTGCTTGTTGTCGATCCT
65 CAGCCGGAAAGGCAGAAAGAGCAAGCCGAGGAACAGCCCAGTCCCCCCTGCGTGCTGTCGATCCT
* *
23078377 GCTATCGCAACCCTCGATCT-GATCCGAT
130 ACTACCGCAACCCTCGAT-TAGATCCGAT
* * * * *
23078405 CTTAGACTCGGAATGAACTCCGTATTCCTAAGTCAACCCATAAAAGGAGCGTGCGGGTGCTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAGC
* *
23078470 CAGCCGGAAAGGCAGAATGAGCAAGTCGAGGATAC-GCCC-GATCCCCCCTGCGTGCTGTCGATC
65 CAGCCGGAAAGGCAGAAAGAGCAAGCCGAGGA-ACAGCCCAG-TCCCCCCTGCGTGCTGTCGATC
* *
23078533 TTACTACCGCAACCCTCGATTAGATTCGAT
128 CTACTACCGCAACCCTCGATTAGATCCGAT
*
23078563 CTTAGGCTAGGAATGAACTCCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
23078590 TTAGACTGGG
Statistics
Matches: 156, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
157 3 0.02
158 152 0.97
159 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAGCC
AGCCGGAAAGGCAGAAAGAGCAAGCCGAGGAACAGCCCAGTCCCCCCTGCGTGCTGTCGATCCTA
CTACCGCAACCCTCGATTAGATCCGAT
Found at i:23079689 original size:159 final size:159
Alignment explanation
Indices: 23079424--23079785 Score: 406
Period size: 159 Copynumber: 2.3 Consensus size: 159
23079414 CCTACCGTAG
* * * *
23079424 CCCTCAGTCCAATCTGATCTTAGACTGGGAATGAACTT-GTATGCCTAAGGCAACCCACGAAATG
1 CCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGGCAACCCACAAAATG
* ** * * * * * * *
23079488 AGCGTGCAGGTGCTCAGCCGGTCGGAGAGGTAGAATGCACAAGCCGGGGA-CCGACCTAGTCCCC
66 AGCGTACAGGCACTCAGCCAGCCGAAGAAGCAGAATGCACAAGCCGGGGATCAGACCGA-TCCCC
*
23079552 CCCTGCGTGCTGTCGATCCTACTACCACAA
130 CCCTGCGTGCTGCCGATCCTACTACCACAA
* * *
23079582 CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATG
1 CCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGGCAACCCACAAAATG
* * * * *
23079647 AGCGTACGGGCACTGAGCCAGCCGAAGAAGCATAATGCACAAGTCGGGGATCAGCCCGATCCCCC
66 AGCGTACAGGCACTCAGCCAGCCGAAGAAGCAGAATGCACAAGCCGGGGATCAGACCGATCCCCC
* * *
23079712 CCTGCGTGCTGCCGATCCTGCTATCGCAA
131 CCTGCGTGCTGCCGATCCTACTACCACAA
* * ** *
23079741 CTCTTGGTCCGATCTAATCTTAGACTAGGAATGAAC-TCTGTATGC
1 CCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTC-GTATGC
23079786 TTAGACTGGG
Statistics
Matches: 168, Mismatches: 33, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
158 35 0.21
159 128 0.76
160 5 0.03
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.21
Consensus pattern (159 bp):
CCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGGCAACCCACAAAATG
AGCGTACAGGCACTCAGCCAGCCGAAGAAGCAGAATGCACAAGCCGGGGATCAGACCGATCCCCC
CCTGCGTGCTGCCGATCCTACTACCACAA
Found at i:23079810 original size:26 final size:26
Alignment explanation
Indices: 23079759--23079811 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23079749 CCGATCTAAT
**
23079759 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
23079785 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
23079811 C
1 C
23079812 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:23081223 original size:170 final size:171
Alignment explanation
Indices: 23080586--23081278 Score: 605
Period size: 171 Copynumber: 4.0 Consensus size: 171
23080576 GCGTGCTGCT
* * * * * *
23080586 GGTCCTGCTGCCATAACCCTC-AGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTA
1 GGTCCTGCTGCCACAACCCTCGA-TCCGACTAGAGCTTAAACATGGAATAAACTCCGTATGCCTA
* * * * * * *
23080650 AGCCAACCCACGAAACGGGCGTGCGGGCACTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGGG
65 AGCCAACCCATGAAACGAGCATACGGGCGCTCAACCGATCGAAGAGGCAGAATGTGCAAGCCGGG
* * *
23080715 GATCGGCTCGGTCCCCCC-TGCGTGCTG-CGATCTTGCTACC
130 GATCGGCCCAGTCCCCCCTTGCGTGCTGTCGATCCTGCTACC
** * ** * * * *
23080755 GCAACCCTCGGTCTGGTCCGATCCTAGACTGGGAAT--GAACTCTGTATGCTTAGACCA-GGGAT
1 G--GTCCT--G-CT-G-CC-A--CAACCCT-CG-ATCCG-ACT-AG-A-GCTTA-AACATGGAAT
* * * * * * *
23080817 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTCCGGGCACTCACCCGATCGAAGAGGTA
49 AAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCGCTCAACCGATCGAAGAGGCA
* *
23080882 GAATGTGCAAGCCGGGGATCGGCCCAGT-CCCCCTCTACGTGCTGTCGATCCCGCTACC
114 GAATGTGCAAGCCGGGGATCGGCCCAGTCCCCCCT-TGCGTGCTGTCGATCCTGCTACC
* * *
23080940 GGTCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAAACATGGAATGAACTCCGTATGCCTAA
1 GGTCCTGCTGCCACAACCCTCGATCCGACTAGAGCTTAAACATGGAATAAACTCCGTATGCCTAA
* * *
23081005 GCCAACCCATGAAATGAGCATACGAGCGCTCAACCGATCGAAGAGGCAGAATGCGCAAGCCGGGG
66 GCCAACCCATGAAACGAGCATACGGGCGCTCAACCGATCGAAGAGGCAGAATGTGCAAGCCGGGG
* * ***
23081070 ATCGGCCCTGTCCCCCCTTGCGTGCTGCCGATCCTGCTGTT
131 ATCGGCCCAGTCCCCCCTTGCGTGCTGTCGATCCTGCTACC
* * * * *
23081111 GGTCTTGCTGCCGCAACCCTCGATTC-ATCT-GATCTTAGACATGGAATAAACTCCGTATGCCTA
1 GGTCCTGCTGCCACAACCCTCGATCCGA-CTAGAGCTTAAACATGGAATAAACTCCGTATGCCTA
* * ** * * *
23081174 AGCCAACCCACGAAACGAGCATGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGTGCAAGTCGGG
65 AGCCAACCCATGAAACGAGCATACGGGCGCTCAACCGATCGAAGAGGCAGAATGTGCAAGCCGGG
* *
23081239 GATCGGCCCAGTCCCCCC-TGCATGCTATCGATCCTGCTAC
130 GATCGGCCCAGTCCCCCCTTGCGTGCTGTCGATCCTGCTAC
23081279 TGCAACCCTC
Statistics
Matches: 420, Mismatches: 78, Indels: 52
0.76 0.14 0.09
Matches are distributed among these distances:
169 18 0.04
170 105 0.25
171 136 0.32
172 6 0.01
173 3 0.01
174 6 0.01
175 6 0.01
176 2 0.00
177 2 0.00
178 2 0.00
179 5 0.01
180 4 0.01
181 3 0.01
182 6 0.01
183 94 0.22
184 10 0.02
185 12 0.03
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (171 bp):
GGTCCTGCTGCCACAACCCTCGATCCGACTAGAGCTTAAACATGGAATAAACTCCGTATGCCTAA
GCCAACCCATGAAACGAGCATACGGGCGCTCAACCGATCGAAGAGGCAGAATGTGCAAGCCGGGG
ATCGGCCCAGTCCCCCCTTGCGTGCTGTCGATCCTGCTACC
Found at i:23082483 original size:26 final size:26
Alignment explanation
Indices: 23082447--23082499 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23082437 CCAGTCATAT
23082447 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
23082473 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
23082499 C
1 C
23082500 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:23083101 original size:11 final size:11
Alignment explanation
Indices: 23083087--23083111 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
23083077 CTCTCCGGTA
23083087 ATGCTCCGACG
1 ATGCTCCGACG
23083098 ATGCTCCGACG
1 ATGCTCCGACG
23083109 ATG
1 ATG
23083112 GTGCCTCGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.20
Consensus pattern (11 bp):
ATGCTCCGACG
Found at i:23083715 original size:26 final size:26
Alignment explanation
Indices: 23083679--23083731 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23083669 CCAGTCTGAT
23083679 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23083705 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23083731 C
1 C
23083732 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23084088 original size:26 final size:26
Alignment explanation
Indices: 23084059--23084111 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23084049 CCGGTCCGAT
23084059 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
23084085 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23084111 C
1 C
23084112 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23084195 original size:196 final size:185
Alignment explanation
Indices: 23083888--23084447 Score: 540
Period size: 185 Copynumber: 3.0 Consensus size: 185
23083878 TCTGACTGGG
* * * *
23083888 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGGGTG-TGGGAGCTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGAGTGCAGGCA-CTCA
** * * * * *
23083952 GCCGGTTGGAGAGGCAGAATGCGTAAGCCGAGGATCGACTCGAT-CCCCCCTACGTGTTGTCGAT
65 GCCGGCCGGAGAGGCAGAATACGCAAGCCGAGGACCGACTCGATCCCCCCCTACGTGCTATCGAT
*
23084016 CCCGCTACTGGTCTAGCTACCGTAACCCTCGGTCCGG-TCCGATCTTAGACTAGGAATGAACTCC
130 ----C--CT-GT-T-GCCA-C--AACCCTCGGTCCGGCT-CGATCTTAGACTAGGAATGAACTCC
23084080 GTAT
182 GTAT
*
23084084 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAACAGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGAGTGCAGGCACTCAG
* *
23084149 CCGGCCGGAGAGGTAGAATACGCAAGTCGAGGACCGAC-CTGATCCCCCCCTACGTGCTATCGAT
66 CCGGCCGGAGAGGCAGAATACGCAAGCCGAGGACCGACTC-GATCCCCCCCTACGTGCTATCGAT
* * *
23084213 CCTGTTGCCACAACCGTCGGTCTGGCTCGATCTTAGACTGGGAATGAACTCCGTAT
130 CCTGTTGCCACAACCCTCGGTCCGGCTCGATCTTAGACTAGGAATGAACTCCGTAT
* * * ** * * *
23084269 GCTTAGACGTGGATTGAACTCCGTTTGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGAGTGCAGGCACTCAG
* * * * * * * * * *
23084334 CTGGCCGGAGAGGCAGAAT-TGCCAAGCTGGGGATCGGCCCGGT-CCCCCCTACGTGCTGTAGAT
66 CCGGCCGGAGAGGCAGAATACG-CAAGCCGAGGACCGACTCGATCCCCCCCTACGTGCTATCGAT
* * * * * *
23084397 CCTGCTCCCGCAACCCTCGGTCTGG-TCCAATCTTAGACTATGAATGAACTC
130 CCTGTTGCCACAACCCTCGGTCCGGCT-CGATCTTAGACTAGGAATGAACTC
23084448 TATATGCCTA
Statistics
Matches: 312, Mismatches: 45, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
183 1 0.00
184 61 0.20
185 126 0.40
186 2 0.01
187 1 0.00
188 3 0.01
189 1 0.00
190 2 0.01
191 2 0.01
193 1 0.00
195 1 0.00
196 90 0.29
197 21 0.07
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGAGTGCAGGCACTCAG
CCGGCCGGAGAGGCAGAATACGCAAGCCGAGGACCGACTCGATCCCCCCCTACGTGCTATCGATC
CTGTTGCCACAACCCTCGGTCCGGCTCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:23084625 original size:159 final size:158
Alignment explanation
Indices: 23084269--23084763 Score: 421
Period size: 158 Copynumber: 3.1 Consensus size: 158
23084259 AACTCCGTAT
* * * * * * *
23084269 GCTTAGACGTGGATTGAACTCCGTTTGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGAGGGCGCTCAG
** * *
23084334 CTGGCCGGAGAGGCAGAATTGCCAAGCTGGGGATCGGCCCGGTCCCCCCTACGTGCTGTAGATCC
66 CCAGCCGGAGAGGCAGAATTGCCAAGCTGGGGATCGACCCGGTCCCCCCTACGTACTGTAGATCC
* * *
23084399 TGCTCCCGCAACCCTCGGTCTGGTCCAA
131 TGCTACCACAACCCTCGATCTGGTCCAA
* * * *
23084427 TCTTAGACTAT-GAATGAACTCTATATGCCTAAGTCAACCCACGAAATGAGCGTGAGGGCGCTGA
1 GCTTAGAC-ATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGAGGGCGCTCA
* * * * *
23084491 GCCAGTCGGAGAGGCATAA-TGCACAA-ATCGGGGATCGACCCGGTCGCCCTCTACGTACTGTCG
65 GCCAGCCGGAGAGGCAGAATTGC-CAAGCT-GGGGATCGACCCGGTC-CCCCCTACGTACTGTAG
* * ***
23084554 ATGCC-GCTACCACATCTCTCGATCTGG-CTGGG
127 AT-CCTGCTACCACAACCCTCGATCTGGTC-CAA
* * *
23084586 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGT-ACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGA-GGGCGCTCA
* * * * * * * * * ***
23084650 GTCGGCCGAAGAGGTAGAA-TGCGCAAGCAGGGGATCGGCCCGATCCCCCCTCCGTGCTACCGAT
65 GCCAGCCGGAGAGGCAGAATTGC-CAAGCTGGGGATCGACCCGGTCCCCCCTACGTACTGTAGAT
* * * *
23084714 CCTACTGCCGCAACCCTCGGTCTGGTCCAA
129 CCTGCTACCACAACCCTCGATCTGGTCCAA
*
23084744 TCTTAGAC-TGGGAATGAACT
1 GCTTAGACAT-GGAATGAACT
23084764 TTGTATGCTT
Statistics
Matches: 264, Mismatches: 61, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 7 0.03
158 135 0.51
159 120 0.45
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGAGGGCGCTCAG
CCAGCCGGAGAGGCAGAATTGCCAAGCTGGGGATCGACCCGGTCCCCCCTACGTACTGTAGATCC
TGCTACCACAACCCTCGATCTGGTCCAA
Found at i:23084795 original size:26 final size:26
Alignment explanation
Indices: 23084745--23084797 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23084735 CTGGTCCAAT
**
23084745 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23084771 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23084797 C
1 C
23084798 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23085823 original size:157 final size:159
Alignment explanation
Indices: 23085480--23085815 Score: 375
Period size: 159 Copynumber: 2.1 Consensus size: 159
23085470 AACTCTATAT
*
23085480 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGAGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCA
*
23085544 GTCGGCCAGAGAGGCAGAATGCACAAGTCGAGGATCGACCCAGTCCCCCTCTTCATGCTGTCAGT
65 GTCGGCCAGAGAGGCAAAATGCACAAGTCGAGGATCGACCCAGTCCCCCTCTTCATGCTGTCAGT
* * *
23085609 GCCGCTACCACAACCCTCGGTCCGGTTGGG
130 GCCACTACCACAACCCTCGGTCCGATTGGA
* * * * * *
23085639 GATTAGAC-GTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCA
1 GCTTAGACTG-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCA
* * ** * *
23085703 GTCGGTCGGAGAGG-AAAATGCGTAAGTCGAGGATC-AGCCCAGT-CCCCT-TTACGTGCTG-CT
65 GTCGGCCAGAGAGGCAAAATGCACAAGTCGAGGATCGA-CCCAGTCCCCCTCTT-CATGCTGTCA
*
23085763 GAT-CCTACTACCACAACCCTCGGTCTGATCT-GA
128 G-TGCC-ACTACCACAACCCTCGGTCCGAT-TGGA
*
23085796 TCTTAGACTGGGAATGAACT
1 GCTTAGACTGGGAATGAACT
23085816 TCGTATGCTT
Statistics
Matches: 149, Mismatches: 20, Indels: 18
0.80 0.11 0.10
Matches are distributed among these distances:
156 6 0.04
157 50 0.34
158 26 0.17
159 67 0.45
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
TCGGCCAGAGAGGCAAAATGCACAAGTCGAGGATCGACCCAGTCCCCCTCTTCATGCTGTCAGTG
CCACTACCACAACCCTCGGTCCGATTGGA
Found at i:23085849 original size:26 final size:26
Alignment explanation
Indices: 23085797--23085849 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23085787 CTGATCTGAT
**
23085797 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCCAATG
* *
23085823 CTTAGACTGGGGATGAATTTCCAATG
1 CTTAGACTGGGAATGAACTTCCAATG
23085849 C
1 C
23085850 CACCGGTTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCCAATG
Found at i:23085992 original size:26 final size:26
Alignment explanation
Indices: 23085954--23086006 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
23085944 GGCTCAAACT
23085954 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
23085980 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
23086006 C
1 C
23086007 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:23087126 original size:355 final size:355
Alignment explanation
Indices: 23086615--23087269 Score: 822
Period size: 355 Copynumber: 1.8 Consensus size: 355
23086605 GATCCTGTTA
* * * * *
23086615 CCGCAACCCTCAATCCGGTGCGATCTTAGACTGGGAATGAACCCCGTATGCTTAAATTGGGGATG
1 CCGCAACCCTCAATCCGGTGAGATCTTAGACTGGGAATGAACCCCGTATCCCTAAAATGGGAATG
* * * *
23086680 AACTACCTATGCCTAAGTCAACCTACGAAAAGAGCGTACGGGCGCTCAGCCGGCTAGAGAGGCAT
66 AACTACCTATGCCTAAGCCAACCCACGAAAAGAGCGTACGGGCGCTCAGCCGGCCAGAGAGGCAG
* ** *
23086745 AATGCGCAAGCCGAGGATCAGCCTGGTCC-CCCTCTACGTGCTGTCGGTCTTGCTGCCACAACCC
131 AATGCGCAAGCAGAGGATCAGCCTGGTCCACCC-CTACGTGCTGTCAATCTTGCTACCACAACCC
* * * * *
23086809 TCAATCTGGAT-GGGCCTTAGACAT-GGAATGAACTCCGTCTGCCTAAG-CTAACTAACGAAACG
195 TCAATCCGG-TCCGACCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTC-AACCAACGAAACG
*
23086871 AGCGTGCGGGCGCTCAGCTGGA-CGGAGAGGCAGAATGCGCAAGCCAGGGATCGCCCAGTCTCCC
257 AGCGTGCGGGCGCTCAGC-CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGCCCAGTCTCCC
23086935 CCCGCATGCTGCCAATCCTGCTGCTGGTCCTACTG
321 CCCGCATGCTGCCAATCCTGCTGCTGGTCCTACTG
* * *
23086970 CCGCAACCCTCAGTCCGGTTAGATCTTAGACTGGGAATGAACTCCGTATCCCTAAACAT-GGAAT
1 CCGCAACCCTCAATCCGGTGAGATCTTAGACTGGGAATGAACCCCGTATCCCTAAA-ATGGGAAT
* * * * * * *
23087034 GAACT-CCGTATGGCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGCTGGCCGGAGAGGT
65 GAACTACC-TATGCCTAAGCCAACCCACGAAAAGAGCGTACGGGCGCTCAGCCGGCCAGAGAGGC
* *
23087098 AGAATGCGCAAGCTAG-GGATCGGCCTGGTCCACCCCTGCGTGCTGTCAATCTTGCTACCACAAC
129 AGAATGCGCAAGC-AGAGGATCAGCCTGGTCCACCCCTACGTGCTGTCAATCTTGCTACCACAAC
* * * * * *
23087162 CCTCAGTCCGGTCCGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGA
193 CCTCAATCCGGTCCGACCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGA
* * *
23087227 GCGTGCGGGCGTTGAGCCGACCGGAGAGGCATAATGCGCAAGC
258 GCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGC
23087270 TGGGGATTGG
Statistics
Matches: 252, Mismatches: 40, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
354 6 0.02
355 240 0.95
356 6 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (355 bp):
CCGCAACCCTCAATCCGGTGAGATCTTAGACTGGGAATGAACCCCGTATCCCTAAAATGGGAATG
AACTACCTATGCCTAAGCCAACCCACGAAAAGAGCGTACGGGCGCTCAGCCGGCCAGAGAGGCAG
AATGCGCAAGCAGAGGATCAGCCTGGTCCACCCCTACGTGCTGTCAATCTTGCTACCACAACCCT
CAATCCGGTCCGACCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCG
TGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGCCCAGTCTCCCCCCGC
ATGCTGCCAATCCTGCTGCTGGTCCTACTG
Found at i:23087318 original size:159 final size:159
Alignment explanation
Indices: 23087029--23087510 Score: 397
Period size: 159 Copynumber: 3.0 Consensus size: 159
23087019 CCCTAAACAT
* * * *
23087029 GGAATGAACTCCGTATGGCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGCTGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * * **
23087094 AGGTAGAATGCGCAAGCTAGGGATCGGCCTGGTCCACCCCTGCGTGCTGTCAATCTTGCTACCAC
66 AGGCAGAATGCGCAAGCTAGGGATCGGCCTGATCCACCCCTGCGTCCTGCCAATCCCGCTACCAC
23087159 AACCCTCAGTCCGGTCCGATCTTAGGCTG
131 AACCCTCAGTCCGGTCCGATCTTAGGCTG
* * * * *
23087188 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGTTGAGCCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * * * *
23087253 AGGCATAATGCGCAAGCTGGGGATTGGCCTGATCC-CCCACTGTGTCCTGCCGATCCCGCTGCCA
66 AGGCAGAATGCGCAAGCTAGGGATCGGCCTGATCCACCC-CTGCGTCCTGCCAATCCCGCTACCA
* * ** *
23087317 CAACCCTC-GATCTGG-CTGGGGCTTAGACAT-
130 CAACCCTCAG-TCCGGTC-CGATCTTAGGC-TG
* ** * * * * *
23087347 GGAATGAACTTCC-TATGCCTTAGCCAACCCATAAAATGGGCGTGCGGGCGCTCA-ACAAGCTGG
1 GGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-CCGG
* * ** * * * * * *
23087410 AGAGGTAGAATGCGCAAACCGGGGATCGACCT-AGTCC-CTCCTGCGTGCTGCCGATCCTGCTAT
64 AGAGGCAGAATGCGCAAGCTAGGGATCGGCCTGA-TCCACCCCTGCGTCCTGCCAATCCCGCTAC
* * * **
23087473 CGCAA-CCTCGGTCCGGTCTGATCTTACACTG
128 CACAACCCTCAGTCCGGTCCGATCTTAGGCTG
23087504 GGAATGA
1 GGAATGA
23087511 GCTTCGCATG
Statistics
Matches: 260, Mismatches: 53, Indels: 22
0.78 0.16 0.07
Matches are distributed among these distances:
156 1 0.00
157 22 0.08
158 32 0.12
159 201 0.77
160 4 0.02
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
AGGCAGAATGCGCAAGCTAGGGATCGGCCTGATCCACCCCTGCGTCCTGCCAATCCCGCTACCAC
AACCCTCAGTCCGGTCCGATCTTAGGCTG
Found at i:23088118 original size:18 final size:18
Alignment explanation
Indices: 23088089--23088133 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
23088079 ACCCCTCGGC
*
23088089 CCCCCAAT--CGTCAGAA
1 CCCCCAATGCCGTCAAAA
23088105 CCCCCAATGCCGTCAAAA
1 CCCCCAATGCCGTCAAAA
23088123 CCCCCAATGCC
1 CCCCCAATGCC
23088134 ATCGGTTAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 8 0.31
18 18 0.69
ACGTcount: A:0.29, C:0.49, G:0.11, T:0.11
Consensus pattern (18 bp):
CCCCCAATGCCGTCAAAA
Found at i:23088749 original size:26 final size:26
Alignment explanation
Indices: 23088711--23088763 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23088701 TGCTCAAACT
23088711 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
23088737 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
23088763 C
1 C
23088764 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:23089045 original size:196 final size:196
Alignment explanation
Indices: 23088710--23089069 Score: 474
Period size: 196 Copynumber: 1.8 Consensus size: 196
23088700 TTGCTCAAAC
23088710 TCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
** * ** * * *
23088775 CATGAAACAAGTGTGCGGGCACTCAGTCGACCGAAGAGGTAGAATGCGCAAGTCAGGGATCAGCC
66 CACAAAACAAGCGTAAGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGTCAGGGATCAACC
23088840 CAGTCCCCCCT-GCATGCTGTCGATCCTACTGCTGGTCCAGCTGTCGCAACCCTCGGTCCGATCT
131 CAGTCCCCCCTAG-ATGCTGTCGATCCTACTGCTGGTCCAGCTGTCGCAACCCTCGGTCCGATCT
23088904 GA
195 GA
* * * *
23088906 TCTTAGATTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
1 TCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
** ** * * *
23088971 CACAAAATGAGCGTAAGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCATGTC-GAGGATCGAA
66 CACAAAACAAGCGTAAGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGTCAG-GGATC-AA
* * *
23089035 TCGA-TCCCCCCTAGGTGCTGTCGATCCTACTGCTG
129 CCCAGTCCCCCCTAGATGCTGTCGATCCTACTGCTG
23089070 CAACCCTCAG
Statistics
Matches: 139, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
195 1 0.01
196 134 0.96
197 4 0.03
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (196 bp):
TCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CACAAAACAAGCGTAAGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGTCAGGGATCAACC
CAGTCCCCCCTAGATGCTGTCGATCCTACTGCTGGTCCAGCTGTCGCAACCCTCGGTCCGATCTG
A
Found at i:23089322 original size:159 final size:155
Alignment explanation
Indices: 23088932--23089434 Score: 424
Period size: 158 Copynumber: 3.2 Consensus size: 155
23088922 AACTCTGTAT
* * * * * *
23088932 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGCGTAAGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GGGTGT-ACGG-GCTTAG
* * ** *
23088997 CCGGCCGGAGAGGCAGAATGCGCATGTCGAGGATC-GAATCGATCCCCCCTAG-GTGCTGTCGAT
63 CCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCT-GGTCCCCCCT-GCGTGCTGTCGAT
* ** *
23089060 CCTACTGCTGCAACCCTCAGTCTAGTCTGA
126 CCCACTGCCACAACCCTCAGTCTAGGCTGA
* * * * * * *
23089090 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAATGATCGTTCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGGT-GTACGGGC-TT-A
* * **
23089154 GCAGGTCGGAGAGGCATAATGCGCAAACCGAGGATCGGCCTGGTCCCCCTCTGCGTGCTGTCGAT
62 GCCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCTGGTCCCCC-CTGCGTGCTGTCGAT
*
23089219 CCCACTGCCACAACCCTCAGTCT-GGCTAGG
126 CCCACTGCCACAACCCTCAGTCTAGGCT-GA
* * *
23089249 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGAGAGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GGGTGTACG-G-GCTTAG
* * * * * *
23089314 CCGATCGGAGAGGTAGAATGCGTAAGTCGAGGATCGGCCTAGTCCCCCCTGCGTGATGTTGATCC
63 CCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
** * ** * *
23089379 TGCTGTCGTAACCCTC-GATCTAGTCCGA
128 CACTGCCACAACCCTCAG-TCTAGGCTGA
*
23089407 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
23089435 TTAGGCTGGG
Statistics
Matches: 274, Mismatches: 56, Indels: 30
0.76 0.16 0.08
Matches are distributed among these distances:
156 2 0.01
157 6 0.02
158 136 0.50
159 122 0.45
160 6 0.02
161 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.22
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGGTGTACGGGCTTAGCCG
GTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCCAC
TGCCACAACCCTCAGTCTAGGCTGA
Found at i:23089437 original size:26 final size:26
Alignment explanation
Indices: 23089408--23089460 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23089398 CTAGTCCGAT
*
23089408 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
23089434 CTTAGGCTGGGGATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
23089460 C
1 C
23089461 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:23094471 original size:26 final size:26
Alignment explanation
Indices: 23094433--23094482 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
23094423 GGCTCAAAAT
23094433 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
23094459 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
23094483 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:23095184 original size:26 final size:26
Alignment explanation
Indices: 23095155--23095207 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23095145 CCGGTCTGAT
*
23095155 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
23095181 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23095207 C
1 C
23095208 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23095273 original size:367 final size:341
Alignment explanation
Indices: 23094431--23095279 Score: 779
Period size: 367 Copynumber: 2.4 Consensus size: 341
23094421 GTGGCTCAAA
*
23094431 ATCTTAGACTGGGAATGAACTCCGTACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * *
23094496 CCATGAAATGAGCGTGCGGGCACTCAGCCGGCCAGAGAGGCATAATGTGCAAGCCGGGGATCAGC
66 CCACGAAATGAGCATGC-GGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGC
*
23094561 CCAATCCCCCACTGCGTGCTACCTGTCCCGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACA
130 CCAATCCCCCACTGCGTGCTACCTGTCCCACTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACA
* * * * **
23094626 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGCCGGCCAGA
195 TAGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACAGGCGCTCAGCCAACCAGA
* * *
23094691 GAGGTAGAAGGCGCAAGCCGGGGATCAGCCCGGTCCCCCTACGTGCTATCGATCTTGCTGTCGCA
260 GAGGCAGAAGGCGCAAGCCGGGGATCAGCCCGGTCCCCCTACGTACTATCGATCTTGCTATCGCA
** *
23094756 ACCCTCGGTCTGGTCTG
325 ACCCTCAATCCGGTCTG
* * * * **
23094773 ATCTTAGACTGGGAATGAACTCCGTATGCATATA-TTGGGGATGAAC-CCTGTATGCCTAAGTTA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCC-GTATGCCTAAGCCA
* * * *
23094836 ACCCACGAAATGAGCGTATG-GCCGCTCAGCCGACCGAAGAGGTTGGTCGAAAAGGCATAATGCA
64 ACCCACGAAATGAGC--ATGCGGCGCTCAGCCGGCCG--GA-G-AGGT-----A-G---AATGCG
* * * * * *
23094900 CAAGCCGGGGATCAGCCCAGTCCCTCTCTGCTTGCTGCCGATCCCGTTGCCGGTCCTACTGCCAT
114 CAAGCCGGGGATCAGCCCAATCCCCCACTGC--G-TG-C--TACC--T----GTCCCACTGCCAC
* * *
23094965 AACCCTCTGTTCGGCTGGGGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACAAAA
167 AACCCTCAGTCCGGCTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACAAAA
* * * * * * ** *
23095030 TGAGCGTACGGGTGCTCAGCCAATCGGCA-AGGCAGAATGCGCAAGCCGGGGATTGGCCTGGTCC
232 CGAGCGTACAGGCGCTCAGCCAACCAG-AGAGGCAGAAGGCGCAAGCCGGGGATCAGCCCGGTCC
* *
23095094 CCCTTGCGTACTGTCGATCCTGCTGTTGCTCCTACTATCGCAACCCTCAATCCGGTCTG
296 CCC-TACGTACTATCGA---T-C--TTG------CTATCGCAACCCTCAATCCGGTCTG
*
23095153 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* *
23095218 CCACGAAATGAGCATGCAGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGCAAGCCGAGGATC
66 CCACGAAATGAGCATGC-GGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATC
23095280 GACCTGGTCC
Statistics
Matches: 396, Mismatches: 64, Indels: 69
0.75 0.12 0.13
Matches are distributed among these distances:
341 3 0.01
342 77 0.19
344 4 0.01
345 1 0.00
346 2 0.01
351 1 0.00
355 32 0.08
357 1 0.00
358 2 0.01
359 1 0.00
361 3 0.01
363 1 0.00
367 138 0.35
368 11 0.03
370 1 0.00
371 2 0.01
372 1 0.00
374 3 0.01
376 3 0.01
377 1 0.00
378 5 0.01
380 100 0.25
381 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (341 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAATGAGCATGCGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGCC
CAATCCCCCACTGCGTGCTACCTGTCCCACTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACAT
AGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACAGGCGCTCAGCCAACCAGAG
AGGCAGAAGGCGCAAGCCGGGGATCAGCCCGGTCCCCCTACGTACTATCGATCTTGCTATCGCAA
CCCTCAATCCGGTCTG
Found at i:23095961 original size:159 final size:159
Alignment explanation
Indices: 23095532--23095974 Score: 425
Period size: 159 Copynumber: 2.8 Consensus size: 159
23095522 AACTCTGAAT
* * * *
23095532 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCAATGAAATGAGT-GTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTCGTGCGGGCACTCA
** * ** * * * ** *
23095596 GCTGGCCAGAGAGGCAGAATGCACAAGCTGGGGACCGTCCCAGTCCCCCACTGTGTGCTGTCCAT
66 GCCAGCCGGAGAGGCAGAATGCACAAG-TCAGGATCGACCCGGTCCCCCTTTGCGTGCTGTCCAT
*
23095661 CCTACTACCACAACCCTCGGTTCAGTCTGG
130 CCTACTACCACAACCCTCGGTTCAGGCTGG
* * * * * * * *
23095691 TCTTAGA-TTGGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACGAG-CGTTCCGGCACTA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTCGTGCGGGCACTC
* * * * *
23095754 AGCCTA-CCGGAGAGGCATAATGCGCAAGTCATGGATCAACCCGATCCCCCTTTGCATGCTG-CC
65 AGCC-AGCCGGAGAGGCAGAATGCACAAGTCA-GGATCGACCCGGTCCCCCTTTGCGTGCTGTCC
* * * *
23095817 GGTCTTGCTACCACAACCCTCGG-TCCGGCTAGG
128 -ATCCTACTACCACAACCCTCGGTTCAGGCT-GG
*
23095850 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG-GTCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTCGTGCGGGCACTCA
* * * *
23095914 GCCAGTCGGAGATGCAGAATGCACAAGTCAGAGATTGACTCGGT-CCCCTTTGCGTGCTGTC
66 GCCAGCCGGAGAGGCAGAATGCACAAGTCAG-GATCGACCCGGTCCCCCTTTGCGTGCTGTC
23095975 GATACTGCTA
Statistics
Matches: 222, Mismatches: 51, Indels: 22
0.75 0.17 0.07
Matches are distributed among these distances:
158 26 0.12
159 195 0.88
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTCGTGCGGGCACTCA
GCCAGCCGGAGAGGCAGAATGCACAAGTCAGGATCGACCCGGTCCCCCTTTGCGTGCTGTCCATC
CTACTACCACAACCCTCGGTTCAGGCTGG
Found at i:23096039 original size:26 final size:26
Alignment explanation
Indices: 23096010--23096062 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23096000 CCGGTTCGAT
*
23096010 CTTAGAAT-GGGAATGAACTCCGTATG
1 CTTAGAATAGGG-ATGAACTCCATATG
*
23096036 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGAATAGGGATGAACTCCATATG
23096062 C
1 C
23096063 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATAGGGATGAACTCCATATG
Found at i:23096638 original size:26 final size:26
Alignment explanation
Indices: 23096587--23096639 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23096577 CCGATCCGAT
*
23096587 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23096613 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23096639 C
1 C
23096640 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23096701 original size:197 final size:195
Alignment explanation
Indices: 23096219--23096702 Score: 598
Period size: 196 Copynumber: 2.5 Consensus size: 195
23096209 TCCGACTGGG
* *
23096219 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCACTCAA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCACTCAA
* * * *
23096284 CCGACCAGAGAGGTAGAATACGCAAGCCAGGGATTGGCCCAGTCCCTCCCTGCGTGCTGCCAATC
66 CTGA-CAGAGAGGTAGAATGCGTAAGCCAGGGATTGGCCCAGTCCCTCCCTACGTGCTGCCAATC
* * * * * *
23096349 CTGCCGCTGGTCCTGCTACCGCAACCCTCGGTCGGATCCGATCTTAGACTGGAATGAACTCCATA
130 CTACCGCTCGTACTACTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGAATGAACTCCATA
23096414 T
195 T
*
23096415 GCTTAGACATGGAATGAAC-TCTGTATGCCTAAGCCAACCCATGAAACGAGCATGC-AGACACTC
1 GCTTAGACATGGAATGAACTTC-GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAG-CACTC
* * * * *
23096478 AGTCTGACAGAGAGGCAGAATGCGTAAGCCAGGGATTGGCCC-GATCCCTTCTTACGTGCTGCCG
64 A-ACTGACAGAGAGGTAGAATGCGTAAGCCAGGGATTGGCCCAG-TCCCTCCCTACGTGCTGCCA
* ** *
23096542 ATCTTATTGCTCGTACTACTACCGCAACCTTCGATCCGATCCGATCTTAGACTGGGAATGAACTC
127 ATCCTACCGCTCGTACTACTACCGCAACCCTCGATCCGATCCGATCTTAGACT-GGAATGAACTC
*
23096607 CTTAT
191 CATAT
* * * * *
23096612 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAATCGAACGTACGGGTCA-TCA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAG-CACTCA
* *
23096676 ACTGACTGGAGAGGTAGATTGCGTAAG
65 ACTGAC-AGAGAGGTAGAATGCGTAAG
23096703 TCGAGGATCG
Statistics
Matches: 246, Mismatches: 34, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
195 4 0.02
196 152 0.62
197 85 0.35
198 5 0.02
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.21
Consensus pattern (195 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCACTCAA
CTGACAGAGAGGTAGAATGCGTAAGCCAGGGATTGGCCCAGTCCCTCCCTACGTGCTGCCAATCC
TACCGCTCGTACTACTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGAATGAACTCCATAT
Found at i:23098212 original size:156 final size:157
Alignment explanation
Indices: 23097770--23098708 Score: 712
Period size: 159 Copynumber: 5.9 Consensus size: 157
23097760 ACTCCGTAAG
* * * *
23097770 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * * * **
23097834 CCGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTACCGATC
65 CCTATCGAAGAGGCAGAATACGCAAG-CCGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGATC
** * ** * * **
23097899 CCACTGGCATAACCCTTGGTCTGG-CTGGGG
128 CTGCTGCCGCAACCCTCGGTCCGGTCT-GAT
* * * * * * *
23097929 CATATACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
** * * * * * * * * * **
23097993 -CTGGCCGGAGAGGTAAAATGCGCAAGTCGGGGACCGACCCAGT-CCCCCTACGTTCTACCGATC
65 CCT-ATCGAAGAGGCAGAATACGCAAG-CCGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATC
*
23098056 CTACTGCCGCAACCCTCGGTCCGGTCTGAT
128 CTGCTGCCGCAACCCTCGGTCCGGTCTGAT
* * * *
23098086 CTTAGGCTGGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCTTACGGGTGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* *
23098150 CTATCGAAGAGGCAGAAT-CGCAAGCCGGGACCGACCTGGTCACCCCCTGCGTGCTGTCGATCCT
66 CTATCGAAGAGGCAGAATACGCAAGCCGGGATCGACCCGGTC-CCCCCTGCGTGCTGTCGATCCT
*
23098214 GCTGCTGCAACCCTCGGTCCGGTCTGAT
130 GCTGCCGCAACCCTCGGTCCGGTCTGAT
* * * * * *
23098242 CTTACACTGGGAATGAACTTCGTATACCTAAGTCAACCCATGAAACGAGCGTACGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * *
23098307 C-AGTCGAAGAGGCATAATGCGTAAGCCGAGGATCGGCCCGGTCCCTCTCTGCGTGCTGCCGGTC
66 CTA-TCGAAGAGGCAGAATACGCAAGCCG-GGATCGACCCGGTCCC-CCCTGCGTGCTGTCGATC
* * * * * **
23098371 CCGCTGCCACAACCCTCGATTC-GACTAGGG
128 CTGCTGCCGCAACCCTCGGTCCGGTCT-GAT
** * * * * *
23098401 CTTAGACAAGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGGCATACGGGCACTCGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * ** * * * ** *
23098466 CGACCGAAGAGGCAGAATACACAAGTTGAAGATCGACCCGATCCCCTCTTTGTGCTGTCAATCCT
66 CTATCGAAGAGGCAGAATACGCAAGCCG-GGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
* * * *
23098531 GCTGTCGCAACCCTCAGTCCGATCCGAT
130 GCTGCCGCAACCCTCGGTCCGGTCTGAT
* * * * *
23098559 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACACACGAAACGAGCGTACGAGCGTTGAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * *
23098623 CTGGTC-AGAGAGGCATAATACGCAAGCCAGGGATCGACTCGGTCCCCCTCTGCATGCTGTCGAT
66 CT-ATCGA-AGAGGCAGAATACGCAAGCC-GGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGAT
* *
23098687 CCCGCTGCCACAACCCTCGGTC
127 CCTGCTGCCGCAACCCTCGGTC
23098709 TGATTCAATC
Statistics
Matches: 622, Mismatches: 140, Indels: 36
0.78 0.18 0.05
Matches are distributed among these distances:
154 13 0.02
155 6 0.01
156 112 0.18
157 104 0.17
158 133 0.21
159 253 0.41
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CTATCGAAGAGGCAGAATACGCAAGCCGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCGCAACCCTCGGTCCGGTCTGAT
Found at i:23098562 original size:317 final size:315
Alignment explanation
Indices: 23098095--23098705 Score: 780
Period size: 317 Copynumber: 1.9 Consensus size: 315
23098085 TCTTAGGCTG
* * ** * * *
23098095 GGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCTTACGGGTGCTTAGCCTATCGAAGA
1 GGAATGAACTCCCTATGCCTAAGCAACCCACGAAACGAGCATACGGGCACTCAGCCGACCGAAGA
* * * * *
23098160 GGCAGAATCGCAAGCCGGGACCGACCTGGTCACCCCCTGCGTGCTGTCGATCCTGCTGCTGCAAC
66 GGCAGAATCACAAGCCGAGACCGACCCGATCACCCCCTGCGTGCTGTCAATCCTGCTGCTGCAAC
* * * * *
23098225 CCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTTCGTATACCTAAGTCAACCCATGAAACGA
131 CCTCAGTCCGATCCGATCTTACACTGGGAATGAACTTCGTATACCTAAGTCAACACACGAAACGA
* * * * *
23098290 GCGTACGGGCACTGAGCCAGTC-GAAGAGGCATAATGCGTAAGCC-GAGGATCGGCCCGGTCCCT
196 GCGTACGAGCACTGAGCCAGTCAG-AGAGGCATAATACGCAAGCCAG-GGATCGACCCGGTCCCC
* *
23098353 CTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGATTCGACTAGGGCTTAGACAA
259 CTCTGCATGCTGCCGATCCCGCTGCCACAACCCTCGATTCGACTAGGGCTTAGACAA
* *
23098410 GGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGGCATACGGGCACTCGGCCGACCGAAG
1 GGAATGAACTCCCTATGCCTAAG-CAACCCACGAAACGAGCATACGGGCACTCAGCCGACCGAAG
** * * **
23098475 AGGCAGAATACACAAGTTGAAGATCGACCCGATC-CCCTCTTTGTGCTGTCAATCCTGCTG-TCG
65 AGGCAGAAT-CACAAGCCG-AGACCGACCCGATCACCCCCTGCGTGCTGTCAATCCTGCTGCT-G
* *
23098538 CAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACACACGAA
127 CAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAACTTCGTATACCTAAGTCAACACACGAA
** ** *
23098603 ACGAGCGTACGAGCGTTGAGCTGGTCAGAGAGGCATAATACGCAAGCCAGGGATCGACTCGGTCC
192 ACGAGCGTACGAGCACTGAGCCAGTCAGAGAGGCATAATACGCAAGCCAGGGATCGACCCGGTCC
*
23098668 CCCTCTGCATGCTGTCGATCCCGCTGCCACAACCCTCG
257 CCCTCTGCATGCTGCCGATCCCGCTGCCACAACCCTCG
23098706 GTCTGATTCA
Statistics
Matches: 250, Mismatches: 40, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
315 22 0.09
316 43 0.17
317 173 0.69
318 12 0.05
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (315 bp):
GGAATGAACTCCCTATGCCTAAGCAACCCACGAAACGAGCATACGGGCACTCAGCCGACCGAAGA
GGCAGAATCACAAGCCGAGACCGACCCGATCACCCCCTGCGTGCTGTCAATCCTGCTGCTGCAAC
CCTCAGTCCGATCCGATCTTACACTGGGAATGAACTTCGTATACCTAAGTCAACACACGAAACGA
GCGTACGAGCACTGAGCCAGTCAGAGAGGCATAATACGCAAGCCAGGGATCGACCCGGTCCCCCT
CTGCATGCTGCCGATCCCGCTGCCACAACCCTCGATTCGACTAGGGCTTAGACAA
Found at i:23099485 original size:26 final size:26
Alignment explanation
Indices: 23099449--23099501 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23099439 CCAGTAAGAT
*
23099449 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23099475 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23099501 C
1 C
23099502 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23099985 original size:25 final size:26
Alignment explanation
Indices: 23099951--23100004 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
23099941 CTCTGCGTGT
*
23099951 TGCTTAGACT-GGAATGAACTTCGTA
1 TGCTTAGACTGGGAATGAACTCCGTA
*
23099976 TGCTTAGACTGGGGATGAACTCCGTA
1 TGCTTAGACTGGGAATGAACTCCGTA
23100002 TGC
1 TGC
23100005 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
TGCTTAGACTGGGAATGAACTCCGTA
Found at i:23101536 original size:26 final size:26
Alignment explanation
Indices: 23101498--23101552 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
23101488 CTCTGCGTGC
* *
23101498 TGCTTAGATTGGGAATGAACTCTGTA
1 TGCTTAGACTGGGAATGAACTCCGTA
*
23101524 TGCTTAGACTGGGGATGAACTCCGTA
1 TGCTTAGACTGGGAATGAACTCCGTA
23101550 TGC
1 TGC
23101553 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (26 bp):
TGCTTAGACTGGGAATGAACTCCGTA
Found at i:23101648 original size:149 final size:149
Alignment explanation
Indices: 23101376--23101649 Score: 352
Period size: 149 Copynumber: 1.8 Consensus size: 149
23101366 CCGGTCCGAT
* * * * *
23101376 CTTAGATTGGGAATAAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGTGCGTTGAG
1 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTGCG-TCAA
* * * * * *
23101441 CTGATCAGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCTTAGA
65 CCGATCAGACAGGCATAATGCGCAAGCCGAGGATCAACACGGTCCCCCTCTGCATGCTGCTTAGA
23101506 TTGGGAATGAACTCTGTATG
130 TTGGGAATGAACTCTGTATG
* * * * *
23101526 CTTAGACTGGGGATGAACTCCGTATGCCTAGGTCAACCCATGAAATGAGCGTGCGAGTGC-TCAA
1 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG-GTGCGTCAA
* * *
23101590 CCGGTCAGACATGCATAATGCGCAAGCCGAGGATCAAGACGGTCCCCCTCTGCATGCTGC
65 CCGATCAGACAGGCATAATGCGCAAGCCGAGGATCAACACGGTCCCCCTCTGCATGCTGC
23101650 CAATCCTACT
Statistics
Matches: 104, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
149 53 0.51
150 47 0.45
151 4 0.04
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (149 bp):
CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTGCGTCAAC
CGATCAGACAGGCATAATGCGCAAGCCGAGGATCAACACGGTCCCCCTCTGCATGCTGCTTAGAT
TGGGAATGAACTCTGTATG
Found at i:23101735 original size:26 final size:26
Alignment explanation
Indices: 23101696--23101748 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23101686 CCGATCCGAT
*
23101696 CTTAGACAGGGAATGAACTCCATATG
1 CTTAGACAGAGAATGAACTCCATATG
*
23101722 CTTAGACATAGAATGAACTCCATATG
1 CTTAGACAGAGAATGAACTCCATATG
23101748 C
1 C
23101749 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.25
Consensus pattern (26 bp):
CTTAGACAGAGAATGAACTCCATATG
Found at i:23102078 original size:26 final size:26
Alignment explanation
Indices: 23102031--23102089 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
23102021 TTCGGTTTGG
23102031 TCCG-ATG-TTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
* *
23102055 TTCGTATGCTTAGACTGGGGATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
23102081 TCCGTATGC
1 TCCGTATGC
23102090 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 24 0.80
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGAATGAAC
Found at i:23102194 original size:184 final size:184
Alignment explanation
Indices: 23101879--23102344 Score: 585
Period size: 184 Copynumber: 2.5 Consensus size: 184
23101869 CTAGTCTGAT
* * * * * * *
23101879 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCACTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGT
* * * * * * * *
23101944 CGACTGGAGAGGCATAATGCGCAAGCTAGGGATCGGTTCGGTCCTCACTGCATGCTGCTAATCCT
66 CGACCGGAGAGGCAAAATGCACAAGCCAGGGATCAGCTCAGTCCTCACTGCATGCTGCCAATCCT
* * ** * *
23102009 GCTACCGCAACCTTCGGTTTGGTCCGATGTTAGACTGGGAATGAACTTCGTATG
131 GCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
23102063 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGT
* * * * *
23102128 CGACCGGAGAGGCAAAATGCATAAGCCGGGGATCAGCTCAGTCC-CCCTTGCGTGCTGCCGATCC
66 CGACCGGAGAGGCAAAATGCACAAGCCAGGGATCAGCTCAGTCCTCAC-TGCATGCTGCCAATCC
* *
23102192 TGCTACCGCAACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATG
130 TGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** * * * *
23102247 CTTAGA-TATGGATTGAACTCCGTATGCCTAAGCCAACCCATTAAACGAGTGTGCGGGCGCTCAA
1 CTTAGACTGGGGA-TGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAG
*
23102311 TCGACCGGAGAGGCAAAATGCACAAGCCAAGGAT
65 TCGACCGGAGAGGCAAAATGCACAAGCCAGGGAT
23102345 TGACTCGATC
Statistics
Matches: 243, Mismatches: 37, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
183 6 0.02
184 237 0.98
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.22
Consensus pattern (184 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGT
CGACCGGAGAGGCAAAATGCACAAGCCAGGGATCAGCTCAGTCCTCACTGCATGCTGCCAATCCT
GCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:23102250 original size:26 final size:26
Alignment explanation
Indices: 23102221--23102273 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23102211 CCGGTCTGAT
23102221 CTTAGAT-TGGGAATGAACTCCGTATG
1 CTTAGATAT-GGAATGAACTCCGTATG
*
23102247 CTTAGATATGGATTGAACTCCGTATG
1 CTTAGATATGGAATGAACTCCGTATG
23102273 C
1 C
23102274 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGATATGGAATGAACTCCGTATG
Found at i:23102389 original size:184 final size:184
Alignment explanation
Indices: 23101879--23102423 Score: 546
Period size: 184 Copynumber: 3.0 Consensus size: 184
23101869 CTAGTCTGAT
* * * * * * *
23101879 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCACTGAG
1 CTTAGACTAGGG-ATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAA
* * * * * * * * * * * **
23101943 CCGACTGGAGAGGCATAATGCGCAAGCTAGGGATCGGTTCGGTCCTCACT-GCATGCTGCTAATC
65 TCGACCGGAGAGGCAAAATGCACAAGCCAAGGATCAGCTCAGTCC-CCCTAGCGTGCTGCCGATC
* ** ** * * *
23102007 CTGCTACCGCAACCTTCGGTTTGGTCCGATGTTAGACTGGGAATGAACTTCGTATG
129 CTGCTACCGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
23102063 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTAGGGATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAAT
* ** *
23102128 CGACCGGAGAGGCAAAATGCATAAGCCGGGGATCAGCTCAGTCCCCCTTGCGTGCTGCCGATCCT
66 CGACCGGAGAGGCAAAATGCACAAGCCAAGGATCAGCTCAGTCCCCCTAGCGTGCTGCCGATCCT
* *
23102193 GCTACCGCAACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATG
131 GCTACCGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
23102247 CTTAGA-TATGGATTGAACTCCGTATGCCTAAGCCAACCCATTAAACGAGTGTGCGGGCGCTCAA
1 CTTAGACTAGGGA-TGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAA
* *
23102311 TCGACCGGAGAGGCAAAATGCACAAGCCAAGGAT-TGACTC-GATCCCCCCTAG-GTGCTGTCGA
65 TCGACCGGAGAGGCAAAATGCACAAGCCAAGGATCAG-CTCAG-T-CCCCCTAGCGTGCTGCCGA
* * * * **
23102373 TCTTGCTGCTGCAACCCTCAATCTGACCCT-ATCTTAGACTGGGAATGAACT
127 TCCTGCTACCGCAACCCTCAATCCG-GTCTGATCTTAGACTGGGAATGAACT
23102424 ACTTATGCCT
Statistics
Matches: 307, Mismatches: 47, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
183 9 0.03
184 286 0.93
185 12 0.04
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (184 bp):
CTTAGACTAGGGATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAAT
CGACCGGAGAGGCAAAATGCACAAGCCAAGGATCAGCTCAGTCCCCCTAGCGTGCTGCCGATCCT
GCTACCGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:23102759 original size:158 final size:157
Alignment explanation
Indices: 23102260--23102774 Score: 482
Period size: 158 Copynumber: 3.3 Consensus size: 157
23102250 AGATATGGAT
* * * *
23102260 TGAACTCCGTATGCCTAAGCCAACCCATTAAACGAGTGTGCGGGCGCTCAATCGACCGGAGAGGC
1 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGTCGACCGGAGAGGC
* * * * * *
23102325 AAAATGCACAAGCCAAGGATTGACTCGATCCCCCCTAGGTGCTGTCGATCTTGCTGCTGCAACCC
66 AAAATGCACAAGCCAGGGATCGACTCGGTCCCCCTTACGTGCTGTCGATCCTGCTGC-GCAACCC
* *
23102390 TCAAT-CTGACCCT-ATCTTAGACTGGGAA
130 TCAGTCCAGA--CTGATCTTAGACTGGGAA
* * ** ** * *
23102418 TGAACTACTTATGCCTAAGTTAACCCACAAAACAAGCGTGCAGGCGCTGAG-CTGACCGGAGAGG
1 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGTC-GACCGGAGAGG
* * * * * * ** *
23102482 CATAATGCACAAGTCAGGGATCGACTCAGTCCTCTTCTGCGTGCTGTCGATCCCACTGCCACAAC
65 CAAAATGCACAAGCCAGGGATCGACTCGGTCCCCCT-TACGTGCTGTCGATCCTGCTG-CGCAAC
* * * **
23102547 CTTCTGTTC-GACTGGGGCTTAGACAT-GGAA
128 CCTCAGTCCAGACT-GATCTTAGAC-TGGGAA
* * * **
23102577 TGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGTGCTCAGTCGGTCGGAGAGGC
1 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGTCGACCGGAGAGGC
* * * * * *
23102642 AGAATACACAAGCCTGGGATCGGCCCGGTCCCCCTTACGTGCTGCCGATCCTGCTGTCGCAACCC
66 AAAATGCACAAGCCAGGGATCGACTCGGTCCCCCTTACGTGCTGTCGATCCTGCTG-CGCAACCC
*
23102707 TCAGTCCAGTCTGATCTTAGACTGGGAA
130 TCAGTCCAGACTGATCTTAGACTGGGAA
* *
23102735 TAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
1 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTG
23102775 TGAATGCTCA
Statistics
Matches: 279, Mismatches: 68, Indels: 20
0.76 0.19 0.05
Matches are distributed among these distances:
157 4 0.01
158 154 0.55
159 117 0.42
160 4 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.21
Consensus pattern (157 bp):
TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGTCGACCGGAGAGGC
AAAATGCACAAGCCAGGGATCGACTCGGTCCCCCTTACGTGCTGTCGATCCTGCTGCGCAACCCT
CAGTCCAGACTGATCTTAGACTGGGAA
Found at i:23102821 original size:317 final size:317
Alignment explanation
Indices: 23102246--23102822 Score: 692
Period size: 317 Copynumber: 1.8 Consensus size: 317
23102236 AACTCCGTAT
* * * * * *
23102246 GCTTAGATATGGATTGAACTCCGTATGCCTAAGCCAACCCATTAAACGAGTGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAA
* * * * * *
23102311 TCGACCGGAGAGGCAAAATGCACAAGCCAAGGATTGACTCGATCCCCCCTAGGTGCTGTCGATCT
66 TCGACCGGAGAGGCAAAATACACAAGCCAAGGATCGACCCGATCCCCCCTACGTGCTGCCGATCC
* * * *
23102376 TGCTGCTGCAACCCTCAATCTGACCCTATCTTAGACTGGGAATGAACTACTTATGCCTAAGTTAA
131 TGCTGCTGCAACCCTCAATCTCACCCTATCTTAGACTGGGAATAAACTACGTATGCCTAAGTCAA
* * * * ** *
23102441 CCCACAAAACAAGCGTGCAGGCGCTGAGCTGACCGGAGAGGCATAATGCACAAGTCAGGGATCGA
196 CCCACAAAACAAGCGTGCAGACGCTCAACCGACCACAGAGGCAGAATGCACAAGTCAGGGATCGA
23102506 CTCAGTCCTCTTCTGCGTGCTGTCGATCCCACTGCCACAACCTTCTGTTCGACTGGG
261 CTCAGTCCTCTTCTGCGTGCTGTCGATCCCACTGCCACAACCTTCTGTTCGACTGGG
* * *
23102563 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAA
** * ** * * *
23102628 TCGGTCGGAGAGGCAGAATACACAAGCCTGGGATCGGCCCGGTCCCCCTTACGTGCTGCCGATCC
66 TCGACCGGAGAGGCAAAATACACAAGCCAAGGATCGACCCGATCCCCCCTACGTGCTGCCGATCC
* ** *
23102693 TGCTG-TCGCAACCCTCAGTC-CAGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTC
131 TGCTGCT-GCAACCCTCAATCTCACCCT-ATCTTAGACTGGGAATAAACTACGTATGCCTAAGTC
** * * * * * *
23102756 AACCCATGAAACGAGCGTG-TGAATGCTCAACCGACCACAGAGGCAGGATGCGCAAGTCGGGGAT
194 AACCCACAAAACAAGCGTGCAG-ACGCTCAACCGACCACAGAGGCAGAATGCACAAGTCAGGGAT
23102820 CGA
258 CGA
23102823 ACGGGTGGTA
Statistics
Matches: 211, Mismatches: 46, Indels: 6
0.80 0.17 0.02
Matches are distributed among these distances:
316 5 0.02
317 206 0.98
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAA
TCGACCGGAGAGGCAAAATACACAAGCCAAGGATCGACCCGATCCCCCCTACGTGCTGCCGATCC
TGCTGCTGCAACCCTCAATCTCACCCTATCTTAGACTGGGAATAAACTACGTATGCCTAAGTCAA
CCCACAAAACAAGCGTGCAGACGCTCAACCGACCACAGAGGCAGAATGCACAAGTCAGGGATCGA
CTCAGTCCTCTTCTGCGTGCTGTCGATCCCACTGCCACAACCTTCTGTTCGACTGGG
Found at i:23103710 original size:158 final size:155
Alignment explanation
Indices: 23103416--23103918 Score: 546
Period size: 158 Copynumber: 3.2 Consensus size: 155
23103406 GTAGCTCAAA
* * *
23103416 ATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGA-GGGCACTC
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCA-AAAACGAACGT-ACGGG--CTC
* *
23103480 AGCCGGTCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGAT
62 AGCCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGAT
* *
23103545 CTTGCTGCCACAACCCTCGGTCCAGTCCG
127 CCTGCTGCCACAACCCTCGGTCCGGTCCG
* * * *
23103574 ATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCACAAAACGAACGTACGGTGCTGAG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCA-AAAACGAACGTACGG-GCTCAG
* * * * * **
23103639 CCGGTCGGAGAGGCACAATGCGCAAGCCGGGGATTGGCCCGATCCCCCTCTACGTGCTACCGATC
64 CCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATC
* **
23103704 CCGCTGCCACAACCCTCGGTCCGGCTGGG
128 CTGCTGCCACAACCCTCGGTCCGG-TCCG
* * * * *
23103733 GT-TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAATCCAAGAAACGGGA-GTGCGGGCACT
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCAA-AAAC-GAACGTACGGG--CT
* * * *
23103795 CAGCCAGTGGGAGAGGTAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGA
61 CAGCCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGA
* * * * *
23103860 TCCTACTGCCGCAACCCTTGGTCTGGTCTG
126 TCCTGCTGCCACAACCCTCGGTCCGGTCCG
23103890 ATCTTAGACTGGGAATGAACTCCGTATGC
1 ATCTTAGACTGGGAATGAACTCCGTATGC
23103919 TTAGACTGGG
Statistics
Matches: 283, Mismatches: 51, Indels: 22
0.79 0.14 0.06
Matches are distributed among these distances:
157 53 0.19
158 179 0.63
159 51 0.18
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (155 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCAAAAACGAACGTACGGGCTCAGCC
GGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCACAACCCTCGGTCCGGTCCG
Found at i:23103928 original size:26 final size:26
Alignment explanation
Indices: 23103892--23103944 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23103882 CTGGTCTGAT
*
23103892 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
23103918 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
23103944 C
1 C
23103945 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23104126 original size:26 final size:26
Alignment explanation
Indices: 23104088--23104140 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23104078 CCGCTCTGAT
*
23104088 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23104114 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23104140 C
1 C
23104141 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23104204 original size:196 final size:196
Alignment explanation
Indices: 23103860--23104246 Score: 569
Period size: 196 Copynumber: 2.0 Consensus size: 196
23103850 GTGCTGTCGA
* *
23103860 TCCTACTGCCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTACTGCCGCAACCCTTGGTCCGCTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * *
23103925 TGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGG
66 TGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCAG
* * * *
23103990 AGAGGCAGAATACGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGTTGTCGATCCTGCTTCTG
131 AGAGGCAGAATACGCAAGCCGGGGAACGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCTTCTG
23104055 G
196 G
* *
23104056 TCCTGCTGCCGCAACCCTTGGTCCGCTCTGATCTTAGACTGGGAATGAACTCCTTATGCTTAGAC
1 TCCTACTGCCGCAACCCTTGGTCCGCTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * *
23104121 AT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGTCTGTCA
66 -TGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCA
* * * * * *
23104185 GAGAGGTAGAATGCGCAAGCTGGGGAACGGCCCGATTCCCCGTGTGTGCTATCGATCCTGCT
130 GAGAGGCAGAATACGCAAGCCGGGGAACGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCT
23104247 ACCGCAATCC
Statistics
Matches: 169, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
196 168 0.99
197 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (196 bp):
TCCTACTGCCGCAACCCTTGGTCCGCTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
TGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCAG
AGAGGCAGAATACGCAAGCCGGGGAACGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCTTCTG
G
Found at i:23105269 original size:26 final size:26
Alignment explanation
Indices: 23105230--23105280 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
23105220 TGGTTTGATC
*
23105230 TAGACTGGGTATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
* *
23105256 TAGATTGGGAATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
23105281 CTAAGTCTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:23106153 original size:26 final size:27
Alignment explanation
Indices: 23106101--23106154 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
23106091 CTGGTTCGAT
23106101 CTTAGACTAGGAATGAAACTCCGTATG
1 CTTAGACTAGGAATGAAACTCCGTATG
* * *
23106128 CTTAGACTGGGGATG-AACTTCGTATG
1 CTTAGACTAGGAATGAAACTCCGTATG
23106154 C
1 C
23106155 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (27 bp):
CTTAGACTAGGAATGAAACTCCGTATG
Found at i:23106835 original size:26 final size:26
Alignment explanation
Indices: 23106797--23106849 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23106787 GGCTCAAAAT
*
23106797 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
23106823 CTTAGACAT-GGAATGAACTACGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
23106849 C
1 C
23106850 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:23107249 original size:159 final size:158
Alignment explanation
Indices: 23106822--23107282 Score: 462
Period size: 157 Copynumber: 2.9 Consensus size: 158
23106812 AACTCCGTAT
* * *
23106822 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * **
23106887 CCGGCCGGAGAGGCACAATGCACAAGCCTTGGATCGGCTTGGTCCCCT-TGCGTTCTGTCGATCC
66 CCGGCCGGAGAGGCACAATGCGCAAGCCTGGGATCGGCTCGGTCCCCTCTGCGTACTACCGATCC
* * * **
23106951 TGCTGCGGTAACCCTGGGTCTGGTCTGA
131 TACTGCCGCAACCCTCAGTCTGGTCTGA
* * * * * ** * * * *
23106979 TCTTAGAC-TAGGAATGAACTCTGTACGCATAAGTCAACCCGTGAAACGAGCGAGCAGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
23107043 GCCGGTCGAAGAGGCATAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGGT
65 GCCGGCCGGAGAGGCACAATGCGCAAGCCTGGGATCGGCTCGGT-CCCCTCTGCGTACTACCGAT
* * *
23107108 CCCACTGCCACAACCCTCAGTCTGG-CTGGG
129 CCTACTGCCGCAACCCTCAGTCTGGTCT-GA
* * * * *
23107138 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGAGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* **
23107203 CCGGCCGGAGAGGCAGAATGCGCAAGCCTGGGATCGGCTCAATCCCC-CTGCGTACTACCGATCC
66 CCGGCCGGAGAGGCACAATGCGCAAGCCTGGGATCGGCTCGGTCCCCTCTGCGTACTACCGATCC
*
23107267 TACTACCGCAACCCTC
131 TACTGCCGCAACCCTC
23107283 GATTCCTTTC
Statistics
Matches: 235, Mismatches: 64, Indels: 10
0.76 0.21 0.03
Matches are distributed among these distances:
156 1 0.00
157 111 0.47
158 11 0.05
159 111 0.47
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCACAATGCGCAAGCCTGGGATCGGCTCGGTCCCCTCTGCGTACTACCGATCC
TACTGCCGCAACCCTCAGTCTGGTCTGA
Found at i:23107855 original size:159 final size:155
Alignment explanation
Indices: 23107473--23107914 Score: 504
Period size: 154 Copynumber: 2.8 Consensus size: 155
23107463 CCACTGTCGG
* *
23107473 TCCCGCAGCCACCACCCTCGGTCCGACTGGGG-TTAGACATGGAATGAACTCCCTATGCCTAAGC
1 TCCCGCAGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * * *
23107537 CAACCCATGAAACAGACGTGCGGGCACTCAGTCAGCCGGAGAGGCAGAATGCACAAG-CGGGGAT
66 TAACCCACGAAAGAG-CGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGAT
23107601 CGACCCGATCCCCCTGCTGCTATCAA
130 CGACCCGATCCCCCTGCTGCTATCAA
** * * **** *
23107627 TCTTGCTGCCGCAACCCTC-AGTCCGA-TCCATCTTAGAC-TGGGAATGAACTCCGTATGCCTAA
1 TCCCGCAGCCACAACCCTCGA-TCCGACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAA
* * *
23107689 G-TCAACCCACGAAATGAGCGTGCGGGTGCTGAGCCAGCCGGAGAGGCATAATGCGCAAGCCGGG
64 GCT-AACCCACGAAA-GAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGG
* *
23107753 GATCGACCCGATCCCCCTCTGCATGCTGTCCA
127 GATCGACCCGAT-CCCC-CTGC-TGCTATCAA
23107785 TCCCGCAGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
1 TCCCGCAGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * *
23107850 TAACCCACGAAACG-G-GTACAGGCGCTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCCGGGGAT
66 TAACCCACGAAA-GAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGAT
23107913 CG
130 CG
23107915 GCCGGTCCCA
Statistics
Matches: 235, Mismatches: 40, Indels: 23
0.79 0.13 0.08
Matches are distributed among these distances:
153 2 0.01
154 92 0.39
155 18 0.08
156 4 0.02
157 46 0.20
158 28 0.12
159 43 0.18
160 2 0.01
ACGTcount: A:0.24, C:0.33, G:0.27, T:0.16
Consensus pattern (155 bp):
TCCCGCAGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
TAACCCACGAAAGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC
GACCCGATCCCCCTGCTGCTATCAA
Found at i:23108004 original size:26 final size:26
Alignment explanation
Indices: 23107968--23108020 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23107958 CTGGTCTGAT
23107968 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23107994 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23108020 C
1 C
23108021 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23109129 original size:159 final size:159
Alignment explanation
Indices: 23108859--23109829 Score: 720
Period size: 159 Copynumber: 6.1 Consensus size: 159
23108849 AACTCCGTAT
* * ** * * * * *
23108859 GCTTAGAC-TGCAGATGAACTCTGTATGCCTAAGTTAATCAACAAAACGAGCGTACGGGTGCTCA
1 GCTTAGACATGGA-ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
23108923 GCCGACTGGAGAGACAGAATGCACAAGCCGAGGATCAGCTCGGTCCCCCACTGCGTGCTGTCGAT
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGT-CCCCACTGCGTGCTGTCGAT
*
23108988 CCTGCTGCCACAACCCTCGGTCTGGTCT-GA
129 CCCGCTGCCACAACCCTCGGTCTGGTCTGGA
* * * * * *
23109018 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
23109082 GCCGACCGAAGAGGCATAATGCGCAAGTCGGGGAT-TGACCCGATCCCCCTCTGTGTGCTATCG-
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGGT-CCCCACTGCGTGCTGTCGA
* * * *
23109145 TCCCACAGACACAACCCTCGGTCTGG-CTGGG
128 TCCCGCTGCCACAACCCTCGGTCTGGTCTGGA
* *
23109176 GCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCA
1 GCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
23109240 GCCGGCCGGAA-AGGCAGAATGCACAAGCTGGGGATCAGCCCGGTCCCCACTACGTG-TGGTCCG
65 GCCGACC-GAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCACTGCGTGCT-GT-CG
** ** * * *
23109303 ATCCTACTATCGCAACCCTCGGTCTGAT-TCGA
127 ATCCCGCTGCCACAACCCTCGGTCTGGTCTGGA
* * * * ** * * * *
23109335 TCTTACAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGATTGTGCGAGTGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * ** * *
23109399 G-CTAGCCGGAGAGGCATAATACGCAAGCCAGGGATCAGCCCGATCCCTTCTACATGCTGTCGAT
65 GCCGA-CCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCACTGCGTGCTGTCGAT
* *
23109463 CCCGCTGCCACAACCCTCGGTC-CGACTGGA
129 CCCGCTGCCACAACCCTCGGTCTGGTCTGGA
* * * * ** * *
23109493 GCTTACACATGCAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGTATGTTGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-CGGGCGCTCA
* * * * * * * * *
23109558 TCCGATCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCC-CATGCATACTGCCAAT
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCAC-TGCGTGCTGTCGAT
* *
23109622 CCCGCTGCCACAACCCTCGGTCCGG-CTGGG
129 CCCGCTGCCACAACCCTCGGTCTGGTCTGGA
* *
23109652 GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAA-TAGACGTGCAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCA
* * * ** * * * *
23109715 GCTGGCCGAAGAGGTAGAATGCGCAAGTTGGGAATCGGCCCGGTCCTCACTGCGTGCTGCCGATC
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCACTGCGTGCTGTCGATC
** ** * * *
23109780 TTGCTTTCGCAACCCTCGGTCTGATC-CGA
130 CCGCTGCCACAACCCTCGGTCTGGTCTGGA
*
23109809 TCTTAGAC-TGGGAATGAACTC
1 GCTTAGACAT-GGAATGAACTC
23109830 TATATGCTTA
Statistics
Matches: 636, Mismatches: 150, Indels: 54
0.76 0.18 0.06
Matches are distributed among these distances:
156 2 0.00
157 108 0.17
158 209 0.33
159 311 0.49
160 6 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCACTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCGGTCTGGTCTGGA
Found at i:23109638 original size:317 final size:315
Alignment explanation
Indices: 23108919--23109697 Score: 827
Period size: 317 Copynumber: 2.5 Consensus size: 315
23108909 CGTACGGGTG
* * * * *
23108919 CTCAGCCGACTGGAGAGACAGAATGCACAAGCCGAGGATCAGCTCGGTCCCCCACTGCGTGCTGT
1 CTCAGCCGACCGGAAAGGCAGAATGCACAAGCCGGGGATCAGCTCGGTCCCCCACTGCGT-CTGC
* *
23108984 CGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATA
65 CGATCCTGCTGCCACAACCCTCGGTCTGCTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
23109049 AGTCAACCCACGAAATGAGCGTACGGGCGCTGAGCCGACCGAAGAGGCATAATGCGCAAGTCGGG
129 AGTCAACCCACGAAATGAGCGTACGAGCGCTGAGCAGACCGAAGAGGCATAATACGCAAGCCAGG
* *** * * *
23109114 GATTGACCCGATCCCCCTCTGTGTGCTATCGTCCCACAGACACAACCCTCGGTCTGGCTGGGGCT
194 GATAGACCCGATCCCCCTCTACATGCTATCGTCCCACAGACACAACCCTCGGTCCGACTGGAGCT
* * *
23109179 TAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCA
259 TACACATGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCA
* * * * *
23109236 CTCAGCCGGCCGGAAAGGCAGAATGCACAAGCTGGGGATCAGCCCGGT-CCCCACTACGTGTGGT
1 CTCAGCCGACCGGAAAGGCAGAATGCACAAGCCGGGGATCAGCTCGGTCCCCCACTGCGTCT-G-
* ** * * *
23109300 CCGATCCTACTATCGCAACCCTCGGTCTGATTCGATCTTACACTGGGAATGAACTCCGTATGCCT
64 CCGATCCTGCTGCCACAACCCTCGGTCTG-CTCGATCTTAGACTGGGAATGAACTCCGTATGCCT
** * * * *
23109365 AAGTCAACCCACGAAATGATTGTGCGAGTGTTGAGCTAG-CCGGAGAGGCATAATACGCAAGCCA
128 AAGTCAACCCACGAAATGAGCGTACGAGCGCTGAGC-AGACCGAAGAGGCATAATACGCAAGCCA
* * * * *
23109429 GGGATCAG-CCCGAT-CCCTTCTACATGCTGTCGATCCCGCTGCCACAACCCTCGGTCCGACTGG
192 GGGAT-AGACCCGATCCCCCTCTACATGCTATCG-TCCCACAGACACAACCCTCGGTCCGACTGG
* * * **
23109492 AGCTTACACATGCAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGTATGTTGGGTG
255 AGCTTACACATGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATG-CGGGCA
* * * * * *
23109554 CTCATCCGATC-GAAGAGGTAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCA-TGCATACTG
1 CTCAGCCGACCGGAA-AGGCAGAATGCACAAGCCGGGGATCAGCTCGGTCCCCCACTGCGT-CTG
* * * * **
23109617 CCAATCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACAT-GGAATGAACTCC-TATGCC
64 CCGATCCTGCTGCCACAACCCTCGGT-CTGCTCGATCTTAGAC-TGGGAATGAACTCCGTATGCC
*
23109680 TAAGCCAACCCACGAAAT
127 TAAGTCAACCCACGAAAT
23109698 AGACGTGCAG
Statistics
Matches: 378, Mismatches: 72, Indels: 25
0.80 0.15 0.05
Matches are distributed among these distances:
315 1 0.00
316 47 0.12
317 274 0.72
318 50 0.13
319 6 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (315 bp):
CTCAGCCGACCGGAAAGGCAGAATGCACAAGCCGGGGATCAGCTCGGTCCCCCACTGCGTCTGCC
GATCCTGCTGCCACAACCCTCGGTCTGCTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCCACGAAATGAGCGTACGAGCGCTGAGCAGACCGAAGAGGCATAATACGCAAGCCAGGGA
TAGACCCGATCCCCCTCTACATGCTATCGTCCCACAGACACAACCCTCGGTCCGACTGGAGCTTA
CACATGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCA
Found at i:23110229 original size:26 final size:26
Alignment explanation
Indices: 23110191--23110243 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23110181 TCGGTCTGAT
23110191 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23110217 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23110243 C
1 C
23110244 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23110623 original size:159 final size:158
Alignment explanation
Indices: 23110216--23110623 Score: 408
Period size: 159 Copynumber: 2.6 Consensus size: 158
23110206 AACTCCGTAT
* * * *
23110216 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * ** ** *
23110281 CCGACCGAAGAGGTAGAATGCGTAAGCTGGGGGTCGACCCAGTCCCCCCTGCGTGCTGTCGATCC
66 CTGACCGAAGAGGCAGAATGCGCAAGCCAGGGAACGACCCAGTCCCCCCTGCGTGCTGCCGATCC
* ** *
23110346 TACTGATGCAACCCTCAGTTCGATCCGA
131 CACTGACACAACCCTCAGTCCGATCCGA
* * * * ** * * * *
23110374 TCTTAGAC-TGAGAACGAACTCTGTATGCTTAAGTTAACCCACGAAATGAGCGTACGAGTGCTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * *
23110438 GCTGGCCGAAGAGGCATAAGGCGCAAGCCAGGGAACGACCC-GATCCCCCTCTGCGTGTTGCCGA
65 GCTGACCGAAGAGGCAGAATGCGCAAGCCAGGGAACGACCCAG-TCCCCC-CTGCGTGCTGCCGA
* * *
23110502 TCCCACTGCCACAACCCTCGGTCCGA-CTGA
128 TCCCACTGACACAACCCTCAGTCCGATCCGA
* * * *
23110532 GGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCA
1 -GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* *
23110597 GCTGATCGAAGAGGCAGAATGTGCAAG
65 GCTGACCGAAGAGGCAGAATGCGCAAG
23110624 TCGGGGGTTG
Statistics
Matches: 193, Mismatches: 52, Indels: 9
0.76 0.20 0.04
Matches are distributed among these distances:
157 3 0.02
158 87 0.45
159 102 0.53
160 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CTGACCGAAGAGGCAGAATGCGCAAGCCAGGGAACGACCCAGTCCCCCCTGCGTGCTGCCGATCC
CACTGACACAACCCTCAGTCCGATCCGA
Found at i:23110728 original size:26 final size:26
Alignment explanation
Indices: 23110692--23110744 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23110682 CTGGTCCAAT
*
23110692 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
23110718 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23110744 C
1 C
23110745 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23117344 original size:26 final size:26
Alignment explanation
Indices: 23117306--23117358 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23117296 GGCTCAAAAT
23117306 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23117332 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23117358 C
1 C
23117359 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23117602 original size:149 final size:149
Alignment explanation
Indices: 23117332--23117609 Score: 350
Period size: 149 Copynumber: 1.9 Consensus size: 149
23117322 ACTCCGTATG
* * * *
23117332 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * ** *
23117397 CGGTCAGATAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
66 CGATCAGATAGGCAGAATGCACAAGCCAAAGATCGACCCGATCCCCCCTGCGTGCTGACGATCCT
23117462 GATGCCGGTCCGATCTGAT
131 GATGCCGGTCCGATCTGAT
* *
23117481 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * *
23117545 CCGATC-GA-AGAAGCATAATGCACAAGTCAAAGATC-AGCTCGATCCCCCTCT-CGTGCTGACG
65 CCGATCAGATAG--GCAGAATGCACAAGCCAAAGATCGA-CCCGATCCCCC-CTGCGTGCTGACG
23117606 ATCC
126 ATCC
23117610 GCTGCCACAA
Statistics
Matches: 110, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
147 2 0.02
148 4 0.04
149 102 0.93
150 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.18
Consensus pattern (149 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
CGATCAGATAGGCAGAATGCACAAGCCAAAGATCGACCCGATCCCCCCTGCGTGCTGACGATCCT
GATGCCGGTCCGATCTGAT
Found at i:23118701 original size:158 final size:156
Alignment explanation
Indices: 23118200--23118701 Score: 511
Period size: 158 Copynumber: 3.2 Consensus size: 156
23118190 ACTCTGTATG
* * * *
23118200 CTTAGTCATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * ** * * * *
23118265 CGGTCGGAGAGGTAGAATGCATAAGTCAGGGATCAACCCGATCCCCCCTGCGTGCTGTTGATCCT
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCG-T-CCCCCTGCGTGCTGTCGATCCT
* *
23118330 ACTGCCGCAACCCTCGGTCCG-GTCTGAT
129 ACTGCCACAACCCTCGGTCCGACTC-GAT
* * * * * * * *
23118358 CTTAGACTGAGAATGAACTCCGTATGCCAAAGTCAACCCACAAAACGAGCATACGGGCACTGAGC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * * *
23118423 CGGCCGGAGAGTCATAATGCGCAAGCTGGGGATCGACCCGGTCCCCTTCTACATGCTGTCGGTCC
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC-GTCCCC--CTGCGTGCTGTCGATCC
* * * * * **
23118488 CACTACCACAACACTCTGTCCGACTGGGG
128 TACTGCCACAACCCTCGGTCCGACTCGAT
* * * * *
23118517 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCGCTCAGT
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * *
23118582 CGACCGAAGAGGCAGAAAGCGCAAGCCGGGGATCGGCCCAGTCTCCCCTGCGTGCTGTCGATCCT
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC-GTC-CCCCTGCGTGCTGTCGATCCT
* *
23118647 ACTGCCACAACCCTCGGTCCGATTCAAT
129 ACTGCCACAACCCTCGGTCCGACTCGAT
23118675 CTTAGACAGGGAATGAACTCCGTATGC
1 CTTAGACAGGGAATGAACTCCGTATGC
23118702 TTAGACTGAG
Statistics
Matches: 269, Mismatches: 70, Indels: 10
0.77 0.20 0.03
Matches are distributed among these distances:
157 4 0.01
158 142 0.53
159 119 0.44
160 4 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (156 bp):
CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGTCCCCCTGCGTGCTGTCGATCCTAC
TGCCACAACCCTCGGTCCGACTCGAT
Found at i:23118704 original size:26 final size:26
Alignment explanation
Indices: 23118675--23118727 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23118665 CCGATTCAAT
23118675 CTTAGACAG-GGAATGAACTCCGTATG
1 CTTAGACAGAGG-ATGAACTCCGTATG
* *
23118701 CTTAGACTGAGGATGAACTCTGTATG
1 CTTAGACAGAGGATGAACTCCGTATG
23118727 C
1 C
23118728 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGAGGATGAACTCCGTATG
Found at i:23118825 original size:184 final size:184
Alignment explanation
Indices: 23118516--23118885 Score: 433
Period size: 184 Copynumber: 2.0 Consensus size: 184
23118506 TCCGACTGGG
* * *
23118516 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
* * * * *
23118581 TCGACCGAAGAGGCAGAAAGCGCAAGCCGGGGATCGGCCCAGTCTCCCCTGCGTGCTGTCGATCC
66 CCGACCGAAGAGGCAGAAAGCACAAGCCGAGGATCGACCCAGTCCCCCCTGCGTGCTGTCGA-CC
*
23118646 -TACTGCCACAACCCTCGGTCCGATTC-AATCTTAGACAGGGAATGAACTCCGTAT
130 TTACTGCCACAACCCTCGGTCC-AGTCTAATCTTAGACAGGGAATGAACTCCGTAT
* ** ** * * *
23118700 GCTTAGAC-TGAGGATGAACTCTGTATGCCTAAGTTAACCCACGAAACGAGCGTGTGGGTGCTCA
1 GCTTAGACATG-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * *
23118764 ACCGATCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCC-GATCCCCCCTGTGTGCTGTCGAC
65 ACCGACCGAAGAGGCAGAAAGCACAAGCCGAGGATCGACCCAG-TCCCCCCTGCGTGCTGTCGAC
* *** * * *
23118828 CTTCCTGCTGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAGCTCCGTAT
129 CTTACTGCCACAACCCTCGGTCCAGTCTAATCTTAGACAGGGAATGAACTCCGTAT
23118884 GC
1 GC
23118886 ATAAGTCAAC
Statistics
Matches: 155, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
183 8 0.05
184 147 0.95
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
CCGACCGAAGAGGCAGAAAGCACAAGCCGAGGATCGACCCAGTCCCCCCTGCGTGCTGTCGACCT
TACTGCCACAACCCTCGGTCCAGTCTAATCTTAGACAGGGAATGAACTCCGTAT
Found at i:23118942 original size:501 final size:500
Alignment explanation
Indices: 23117978--23119704 Score: 1935
Period size: 501 Copynumber: 3.4 Consensus size: 500
23117968 ACCGATCCTG
* * *
23117978 CTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTGAGCCAACC
1 CTGCCACAACCCTCG-TCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * ** * *
23118043 CATAAAATGAGCGTGC-TAGCGCTCAGCCGGCCGGGGAGGCAGAATACGTAAGCCAGGGATCGAC
65 CACAAAATGGGCATGCGGA-CGCTCAGCCGACCGAAGAGGCAGAATACGCAAGCCAGGGATCGGC
* * * *
23118107 CCGGT-CCCTCTGCGTGCTGTCGATCCTACTGCTGGTCCTGCTGCCGCAACCGTCGGTCCAATTT
129 CCGGTCCCCCCTGCGTGCTGTCGATCCTA------------CTGCCGCAACCCTCGGTCCGATTC
* * * *
23118171 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGTCATG-GAATGAACTCCGTATGCCTAAGCCA
182 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC-TGAGGATGAACTCTGTATGCCTAAGTCA
* * * * * *
23118235 ACCTACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGTAGAATGCATAAGTCAGGGATCA
246 ACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCG
* *
23118300 ACCCGATCCCCCCTGCGTGCTGTTGATCCTACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGAC
311 ACCCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCAGTCTGATCTTAGAC
* * * *
23118365 TGAGAATGAACTCCGTATGCCA-AAGTCAACCCACAAAACGAGCATACGGGCACTGAGCCGGCCG
376 TGAGAATGAACTCCGTATG-CATAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCGACCG
* * * * *
23118429 GAGAGTCATAATGCGCAAGCTGGGGATCGACCCGGTCCCCTTCTACATGCTGTCGGTCCCA
440 AAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCTTCTGCGTGCTGTCGGTCCCA
* *
23118490 CTACCACAACACTCTGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTC-GTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * *
23118555 CACGAAATGGGCATGCGGGCGCTCAGTCGACCGAAGAGGCAGAA-AGCGCAAGCCGGGGATCGGC
65 CACAAAATGGGCATGCGGACGCTCAGCCGACCGAAGAGGCAGAATA-CGCAAGCCAGGGATCGGC
* * * * *
23118619 CCAGTCTCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCGGTCCGATTCAATCTTAGACAG
129 CCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGATTCGATCTTAGACTG
* *
23118684 GGAATGAACTCCGTATGCTTAGACTGAGGATGAACTCTGTATGCCTAAGTTAACCCACGAAACGA
194 GGAATGAACTCTGTATGCTTAGACTGAGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGA
* * * *
23118749 GCGTGTGGGTGCTCAACCGATCGAAGAGGCAGAATGCACAAGCC-GAGGATCGACCCGATCCCCC
259 GCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCAG-GGATCGACCCGATCCCCC
* * * * * *
23118813 CTGTGTGCTGTCGA-CCTTCCTGCTGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAGC
323 CTGCGTGCTGTCGATCC-TACTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGAGAATGAAC
* * * * *
23118877 TCCGTATGCATAAGTCAACCCACAAAATGAGCGTGTGGGTGTTGAGCCGATCGAAGAGGCATAAT
387 TCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAAT
* *
23118942 GCGTAAGCCGGGGATC-AGCCCGGT-CCCTCTCTGCGTGCTGTCGGTCCCCG
452 GCGCAAGCCGGGGATCGA-CCCGGTCCCCT-TCTGCGTGCTGTCGGT-CCCA
*
23118992 CTGCCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTC-GTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * ** * ** * *
23119057 TACAAAACGGGCGTGCGGACGCTCAGTTGGCC-AGAGAGATAGAATGCGCAAGCCAGGTATCGGC
65 CACAAAATGGGCATGCGGACGCTCAGCCGACCGA-AGAGGCAGAATACGCAAGCCAGGGATCGGC
* * ** * * *
23119121 TCGATCCCCCCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTTCGA-TCTGATCTTAGACT
129 CCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGATTC-GATCTTAGACT
* *
23119185 GGGAATGAACTCTGTATGCTTAGCCT-AGGGATGAAATCTGTATGCCTAAGTCAACCCACGAAAC
193 GGGAATGAACTCTGTATGCTTAGACTGA-GGATGAACTCTGTATGCCTAAGTCAACCCACGAAAC
** * *
23119249 GAGCGTGCGGGTGCTCAGTTGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCC
257 GAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCC
* * * * *
23119314 CCTGCGTGCTGTCGATCCTGCTGCCACAACCCTTGGTCTGATTC-GATCTTAGACCT-AGAATGA
322 CCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGGTC-CAGTCTGATCTTAGA-CTGAGAATGA
** * *
23119377 ACTATGTATGCATAAGTCAGCCCACAAAACGAGCGTGCGGGCGCTGAGCC-AGCCAAAGAGGCAT
385 ACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCGA-CCGAAGAGGCAT
* * * *
23119441 AATGCGCAAGCCGAGGATCG-CCCTAGTCCCCCTCTGTGTGCTGTCGGTCCCA
449 AATGCGCAAGCCGGGGATCGACCC-GGTCCCCTTCTGCGTGCTGTCGGTCCCA
* * * *
23119493 CTGCCTCAACCCTCAATCCTACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACC
1 CTGCCACAACCCTC-GTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* ** * *
23119558 CACGAAA--GGCACGTATGGACGCTCAGCCGACCGGAGAGGCAGAATACGCAAG-CTGAGGATCG
65 CACAAAATGGGCA--TGCGGACGCTCAGCCGACCGAAGAGGCAGAATACGCAAGCCAG-GGATCG
** * * *
23119620 GTTCGGTCCCCCCTGCGTGCTGTCGATCTTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGAC
127 GCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGATTCGATCTTAGAC
*
23119685 TGAGAATGAACTCTGTATGC
192 TGGGAATGAACTCTGTATGC
23119705 CTAAGTGAAC
Statistics
Matches: 1027, Mismatches: 160, Indels: 67
0.82 0.13 0.05
Matches are distributed among these distances:
499 3 0.00
500 14 0.01
501 460 0.45
502 406 0.40
503 11 0.01
511 1 0.00
512 110 0.11
513 22 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (500 bp):
CTGCCACAACCCTCGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
ACAAAATGGGCATGCGGACGCTCAGCCGACCGAAGAGGCAGAATACGCAAGCCAGGGATCGGCCC
GGTCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGATTCGATCTTAGACTGGG
AATGAACTCTGTATGCTTAGACTGAGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGC
GTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCCTG
CGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGAGAATGAACTCCG
TATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGCGC
AAGCCGGGGATCGACCCGGTCCCCTTCTGCGTGCTGTCGGTCCCA
Found at i:23119206 original size:26 final size:26
Alignment explanation
Indices: 23119170--23119229 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
23119160 CCTCAGTTCG
23119170 ATCTG-AT-CTTAGACT-GGGAATGAA
1 ATCTGTATGCTTAGACTAGGG-ATGAA
* *
23119194 CTCTGTATGCTTAGCCTAGGGATGAA
1 ATCTGTATGCTTAGACTAGGGATGAA
23119220 ATCTGTATGC
1 ATCTGTATGC
23119230 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 4 0.13
25 2 0.07
26 21 0.70
27 3 0.10
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
ATCTGTATGCTTAGACTAGGGATGAA
Found at i:23119364 original size:184 final size:184
Alignment explanation
Indices: 23119041--23119387 Score: 457
Period size: 184 Copynumber: 1.9 Consensus size: 184
23119031 ATGAACTCCC
* * * *
23119041 TATGCCTAAGCCAACCTACAAAACGGGCGTGCGGACGCTCAGTTGGCCAGAGAGATAGAATGCGC
1 TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGACGCTCAGTTGGCCAGAGAGACAGAATGCAC
* * * *
23119106 AAGCCAGGTATCGGCTCGATCCCCCCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTTCGA
66 AAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCTGCTGCCACAACCCTCAGTTCGA
* *
23119171 TCTGATCTTAGA-CTGGGAATGAACTCTGTATGCTTAGCCTAGGGATGAAATCTG
131 TCTGATCTTAGACCT-AGAATGAACTATGTATGCTTAGCCTAGGGATGAAATCTG
* * ** * *
23119225 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTTGGCCGGAGAGGCAGAATGCAC
1 TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGACGCTCAGTTGGCCAGAGAGACAGAATGCAC
* ** * *
23119290 AAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCT-TGGTCTG
66 AAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCTGCTGCCACAACCCTCAGTTC-G
23119354 AT-TCGATCTTAGACCTAGAATGAACTATGTATGC
130 ATCT-GATCTTAGACCTAGAATGAACTATGTATGC
23119388 ATAAGTCAGC
Statistics
Matches: 139, Mismatches: 21, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
183 4 0.03
184 133 0.96
185 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (184 bp):
TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGACGCTCAGTTGGCCAGAGAGACAGAATGCAC
AAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCTGCTGCCACAACCCTCAGTTCGA
TCTGATCTTAGACCTAGAATGAACTATGTATGCTTAGCCTAGGGATGAAATCTG
Found at i:23119459 original size:158 final size:157
Alignment explanation
Indices: 23119215--23119982 Score: 618
Period size: 158 Copynumber: 4.9 Consensus size: 157
23119205 TAGCCTAGGG
* * **
23119215 ATGAAATCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTTGGCCGGAGAGG
1 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CCGCCGGAGAGG
* *
23119280 CAGAATGCACAAGCC-AGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAAC
65 CAGAATGCGCAAGCCGA-GGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAAC
* * * *
23119344 CCTTGGTCTGATTCGATCTTAGACCTAGA
129 CCTCGGTCTGACTCGAGCTTAGACATAGA
* * * * * **
23119373 ATGAACTATGTATGCATAAGTCAGCCCACAAAACGAGCGTGCGGGCGCTGAGCCAGCCAAAGAGG
1 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GCCGGAGAGG
* * * * * ** *
23119438 CATAATGCGCAAGCCGAGGATCG-CCCTAGTCCCCCTCTGTGTGCTGTCGGTCCCACTGCCTCAA
65 CAGAATGCGCAAGCCGAGGATCGACTC-GGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCCACAA
** * * *
23119502 CCCTCAATCCT-ACTGGGGCTTAGACATGGA
128 CCCTCGGT-CTGACTCGAGCTTAGACATAGA
** * ** *
23119532 ATGAACTCCCTATGCCTAAG-CTAACCCACGAAAGGCA-CGTATGGACGCTCAGCCGACCGGAGA
1 ATGAACTCTGTATGCCTAAGTC-AACCCACGAAACG-AGCGTGCGGGCGCTCAGCCG-CCGGAGA
* * ** * *
23119595 GGCAGAATACGCAAGCTGAGGATCGGTTCGGTCCCCCCTGCGTGCTGTCGATCTTGCTGCCGCAA
63 GGCAGAATGCGCAAGCCGAGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAA
* *
23119660 CCCTCGGTCCGA-TCCGATCTTAGAC-TGAGA
128 CCCTCGGTCTGACT-CGAGCTTAGACAT-AGA
* * * * * *
23119690 ATGAACTCTGTATGCCTAAGTGAACCCACGAAACGAGTGTTCGGGTGCTAAGCCGACCGTAGAGG
1 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG-CCGGAGAGG
* * * * * * * * * *
23119755 CATAATGCGCAAGTCGGGGATCGGCTCAGT-CCCTCTGTGTGCTGTCGGTCCCGTTGCCACAACC
65 CAGAATGCGCAAGCCGAGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACC
* * * *
23119819 CTCGGTC-CAGCTGGGGCTTAGACATGGA
130 CTCGGTCTGA-CTCGAGCTTAGACATAGA
** * * * * ** * * *
23119847 ATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCATGTAGGCGCTCAATCGGCCAGAGAGG
1 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC-AGCCGCCGGAGAGG
* * * * * *
23119912 TAGAATGCGCAAGCCGAGGATCGACTCGGTCCACCCTACGTGCTGTCGATCTTGCTACCGCAACC
65 CAGAATGCGCAAGCCGAGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACC
23119977 CTCGGT
130 CTCGGT
23119983 TCGGTTCGGT
Statistics
Matches: 468, Mismatches: 123, Indels: 38
0.74 0.20 0.06
Matches are distributed among these distances:
156 1 0.00
157 119 0.25
158 229 0.49
159 115 0.25
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGCCGGAGAGGC
AGAATGCGCAAGCCGAGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCC
TCGGTCTGACTCGAGCTTAGACATAGA
Found at i:23119956 original size:315 final size:315
Alignment explanation
Indices: 23119225--23119982 Score: 954
Period size: 317 Copynumber: 2.4 Consensus size: 315
23119215 ATGAAATCTG
* * ** * * *
23119225 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTTGGCCGGAGAGGCAGAATGCAC
1 TATGCCTAAGCCAACCCACGAAA-GAGCATGTAGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGC
* * * * *
23119290 AAGCC-AGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTTGGTCTG
65 AAGCCGA-GGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCTTGCTGCCGCAACCCTCGGTCCG
* *
23119354 ATTCGATCTTAGACCTAGAATGAACTATGTATGCATAAGTCAGCCCACAAAACGAGCGTGCGGGC
129 ATCCGATCTTAGACCTAGAATGAACTATGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGC
*
23119419 GCTGAGCCAGCCAAAGAGGCATAATGCGCAAGCCGAGGATCGCCCTAGTCCCCCTCTGTGTGCTG
194 GCTAAGCCAGCCAAAGAGGCATAATGCGCAAGCCGAGGATCGCCCTAGT-CCCCTCTGTGTGCTG
*
23119484 TCGGTCCCACTGCCTCAACCCTCAATCCTACTGGGGCTTAGACATGGAATGAACTCCC
258 TCGGTCCCACTGCCACAACCCTCAATCCTACTGGGGCTTAGACATGGAATGAACTCCC
* * * * *
23119542 TATGCCTAAGCTAACCCACGAAAG-GCACGTATGGACGCTCAGCCGACCGGAGAGGCAGAATACG
1 TATGCCTAAGCCAACCCACGAAAGAGCATGTA-GG-CGCTCAGTCGGCCGGAGAGGCAGAATGCG
* **
23119606 CAAGCTGAGGATCGGTTCGGTCCCCCCTGCGTGCTGTCGATCTTGCTGCCGCAACCCTCGGTCCG
64 CAAGCCGAGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCTTGCTGCCGCAACCCTCGGTCCG
* * * * * *
23119671 ATCCGATCTTAGA-CTGAGAATGAACTCTGTATGCCTAAGTGAACCCACGAAACGAGTGTTCGGG
129 ATCCGATCTTAGACCT-AGAATGAACTATGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGG
* ** * * *
23119735 TGCTAAGCC-GACCGTAGAGGCATAATGCGCAAGTCGGGGATCG-GCTCAGT-CCCTCTGTGTGC
193 CGCTAAGCCAG-CCAAAGAGGCATAATGCGCAAGCCGAGGATCGCCCT-AGTCCCCTCTGTGTGC
** **
23119797 TGTCGGTCCCGTTGCCACAACCCTCGGTCC-AGCTGGGGCTTAGACATGGAATGAACTCCC
256 TGTCGGTCCCACTGCCACAACCCTCAATCCTA-CTGGGGCTTAGACATGGAATGAACTCCC
* * * *
23119857 TATGCCTAAGCCAACCCATGAAATGAGCATGTAGGCGCTCAATCGGCCAGAGAGGTAGAATGCGC
1 TATGCCTAAGCCAACCCACGAAA-GAGCATGTAGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGC
* * *
23119922 AAGCCGAGGATCGACTCGGTCCACCCTACGTGCTGTCGATCTTGCTACCGCAACCCTCGGT
65 AAGCCGAGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCTTGCTGCCGCAACCCTCGGT
23119983 TCGGTTCGGT
Statistics
Matches: 377, Mismatches: 55, Indels: 20
0.83 0.12 0.04
Matches are distributed among these distances:
314 1 0.00
315 168 0.45
316 11 0.03
317 196 0.52
318 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (315 bp):
TATGCCTAAGCCAACCCACGAAAGAGCATGTAGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCA
AGCCGAGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCTTGCTGCCGCAACCCTCGGTCCGAT
CCGATCTTAGACCTAGAATGAACTATGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGC
TAAGCCAGCCAAAGAGGCATAATGCGCAAGCCGAGGATCGCCCTAGTCCCCTCTGTGTGCTGTCG
GTCCCACTGCCACAACCCTCAATCCTACTGGGGCTTAGACATGGAATGAACTCCC
Found at i:23120757 original size:26 final size:26
Alignment explanation
Indices: 23120719--23120771 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23120709 GGCTCAAACT
*
23120719 CTTAGACTAGGAATAAACTCTGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
*
23120745 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATAAACTCCGTATG
23120771 C
1 C
23120772 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:23121151 original size:26 final size:26
Alignment explanation
Indices: 23121122--23121174 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23121112 GCGTCCGGGC
23121122 GCTTAGACTGAGAATGAACTCCGTAT
1 GCTTAGACTGAGAATGAACTCCGTAT
* *
23121148 GCTTAGACTGGGGATGAACTCCGTAT
1 GCTTAGACTGAGAATGAACTCCGTAT
23121174 G
1 G
23121175 TCTATGTCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
GCTTAGACTGAGAATGAACTCCGTAT
Found at i:23121527 original size:26 final size:26
Alignment explanation
Indices: 23121491--23121543 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23121481 CTGGTTTGAT
23121491 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
23121517 CTTAGACTGGGGATGGACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23121543 C
1 C
23121544 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23121739 original size:26 final size:26
Alignment explanation
Indices: 23121701--23121753 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23121691 CCGGTCCGAT
*
23121701 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23121727 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23121753 C
1 C
23121754 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23122722 original size:154 final size:155
Alignment explanation
Indices: 23122065--23123054 Score: 612
Period size: 158 Copynumber: 6.3 Consensus size: 155
23122055 TCCGTATTCT
* ** * * ** * * *
23122065 TAGACATCGAATGAACTTTGTATGCCTAAGCCAACCCACGAAATGAGCGTATGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGTTAAG-CT
* * * * * * * * *
23122130 GCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCTCC-CTGCGTGCTGTCGATCCTA
65 GCCAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCC-CCTCTACCTGCTGTCGGTCCTG
* * * **
23122194 TTGCCGCAACCCTCGGTCTGG-TCCGATC
129 CTGCCACAACCCTC-GTCTGGCT-AGGGC
* * * *
23122222 TTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGTGTG-TGGCGTTAAGC
1 -TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGTTAAG-
* * *
23122285 CTGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCTCTACCTGCTGTCGGGCCT
63 CTGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTACCTGCTGTCGGTCCT
* * *
23122350 GCTACCACAACCCTCGTCTGGTTGGGGC
128 GCTGCCACAACCCTCGTCTGGCTAGGGC
* * * * * * *
23122378 TTAGACAT-GAATGAACTCCTTATGCCTAAGCCAA-CCATGAAATG-GCGTGC-GGCGCTCAGCC
1 -TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGTTAAGCT
* * * * * * * ** *
23122439 GTCGGAGAGGCAGAATGCGCAAGCGCGGGGATCAGCCCGGTCCCCCCTGCGTGCTACCGATCCTG
65 GCCAGAGAGGCATAATGCGCAAGC-CGGGGATCGGCCCGGTCCCCTCTACCTGCTGTCGGTCCTG
* ** *
23122504 CTGCCGCAACCCTCGATCTGGTCTAATGT
129 CTGCCACAACCCTCG-TCTGG-CTAGGGC
* * * *
23122533 TAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAC-AGTGTGCGGGTGTTGAGCT
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGTTAAGCT
* * * *
23122596 GGCCAGAGA-GCATAACGCGCAAGCCGGGGATGGGCCCGGTCTCCTCTACCAGCTGTCGGTCC-G
65 -GCCAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTACCTGCTGTCGGTCCTG
23122659 CTGCCACAACCCTCAGTCTGGCTAGGGC
129 CTGCCACAACCCTC-GTCTGGCTAGGGC
* * *
23122687 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCT-TGCGGGTGCCT-AGC
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-TGTGCGGGCG-TTAAG-
** * * * ** * * * * * *
23122750 CAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTTGATCCCCCCCTGCGTGGTGTCGATCC
63 CTGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCTCTACCTGCTGTCGGTCC
* * * * * **
23122815 TACTACCGCAACCCTCGGTC-GGGTCCGATC
127 TGCTGCCACAACCCTC-GTCTGGCT-AGGGC
* * * * * * *
23122845 TTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGC
1 -TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGTTAAG-
* * * * *** *
23122909 CGGCC-GAAGAGGCATAATACGCAAGTCGGGGATCGGCTCGGTCCCCCTCTGTATGCTGTC-ATC
63 CTGCCAG-AGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCTCTACCTGCTGTCGGTC
*** * *
23122972 CCATTGCCATAACCCTCGGTCTGGCTGGGGC
126 CTGCTGCCACAACCCTC-GTCTGGCTAGGGC
* * * *
23123003 TTAGACATGGAATGAACTCCCTATGCGTAAGCCAACACCATGAAACGGGTGT
1 -TAGACATGGAATGAACTCCGTATGCCTAAGCCAAC-CCACGAAACGAGTGT
23123055 ACGGAGCGCT
Statistics
Matches: 652, Mismatches: 148, Indels: 63
0.76 0.17 0.07
Matches are distributed among these distances:
152 22 0.03
153 55 0.08
154 60 0.09
155 86 0.13
156 84 0.13
157 112 0.17
158 121 0.19
159 112 0.17
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (155 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGTTAAGCTG
CCAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTACCTGCTGTCGGTCCTGCT
GCCACAACCCTCGTCTGGCTAGGGC
Found at i:23122851 original size:313 final size:311
Alignment explanation
Indices: 23122063--23123189 Score: 1227
Period size: 310 Copynumber: 3.6 Consensus size: 311
23122053 ACTCCGTATT
* *** * *
23122063 CTTAGACATCGAATGAACTTTGTATGCCTAAGCCAACCCACGAAATGAGCGTATGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GCGTA-CGGCGCTCAGC
* * * * *
23122128 CGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCTCCCTGCGTGCTGTCGATCCT
64 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
* * * *
23122193 ATTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
129 ACTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * *
23122258 CCACAAAACGAGTGTG-TGGCGTTAAGCCT-GCCAGAGAGGCATAATGCGCAAGCCGGGGATCGA
194 CCACGAAAC-AGTGTGCGGGCGTTGAG-CTGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGG
* * * * *
23122321 CCCGATCCCCTCTACCTGCTGTCGGGCCTGCTACCACAACCCTCGTCTGGTTGGGG
257 CCCGGTCCCCTCTACCAGCTGTCGGTCC-GCTGCCACAACCCTCGTCTGGCTGGGG
* * * *
23122377 CTTAGACAT-GAATGAACTCCTTATGCCTAAGCCAA-CCATGAAATGGCGTGCGGCGCTCAGCCG
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGCGTACGGCGCTCAGCCG
* * **
23122440 -TCGGAGAGGCAGAATGCGCAAGCGCGGGGATC-AGCCCGGTCCCCCCTGCGTGCTACCGATCCT
66 ACCGGAGAGGCAGAATGCGCAAGC-CGGGGATCGA-CCCGATCCCCCCTGCGTGCTGTCGATCCT
* * * * * *
23122503 GCTGCCGCAACCCTCGATCTGGTCTAATGTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
129 ACTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * *
23122568 CCACGAAACAGTGTGCGGGTGTTGAGCTGGCCAGAGA-GCATAACGCGCAAGCCGGGGATGGGCC
194 CCACGAAACAGTGTGCGGGCGTTGAGCTGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGGCC
* *
23122632 CGGTCTCCTCTACCAGCTGTCGGTCCGCTGCCACAACCCTCAGTCTGGCTAGGG
259 CGGTCCCCTCTACCAGCTGTCGGTCCGCTGCCACAACCCTC-GTCTGGCTGGGG
* * *
23122686 C-TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCTTGCGGGTGC-CTAG
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GCGTAC-GGCGCTC-AG
* ** *
23122749 CCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTTGATCCCCCCCTGCGTGGTGTCGATC
63 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGAT-CCCCCCTGCGTGCTGTCGATC
* * *
23122814 CTACTACCGCAACCCTCGGTCGGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
127 CTACTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * *
23122879 ACCCATGAAATGAGCGTGCGGGCGCTGAGCCGGCC-GAAGAGGCATAATACGCAAGTCGGGGATC
192 ACCCACGAAA-CAGTGTGCGGGCGTTGAGCTGGCCAG-AGAGGCATAATGCGCAAGCCGGGGATC
* ** * *
23122943 GGCTCGGTCCCCCTCT-GTATGCTGTC-ATCC-CATTGCCATAACCCTCGGTCTGGCTGGGG
255 GGCCCGGT-CCCCTCTACCA-GCTGTCGGTCCGC--TGCCACAACCCTC-GTCTGGCTGGGG
* * *
23123002 CTTAGACATGGAATGAACTCCCTATGCGTAAGCCAACACCATGAAACGGGTGTACGGAGCGCTCA
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC-CCACGAAAC-GGCGTAC-G-GCGCTCA
* * * * * *
23123067 ACCGATCGAAGAAGGCAGAATGCGCAAGCTGGGGATCGACTCGATCCCCCCTGCATGCTGTCGAT
62 GCCGACCGGAG-AGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGAT
* * * * * *
23123132 CCTGCTATCACAACCCTCGGTCCGATCCAATCCTAGACTGGGAATGAACTCCGTATGC
126 CCTACTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
23123190 TTAGACTGGG
Statistics
Matches: 694, Mismatches: 93, Indels: 47
0.83 0.11 0.06
Matches are distributed among these distances:
308 21 0.03
309 112 0.16
310 135 0.19
311 10 0.01
312 28 0.04
313 130 0.19
314 32 0.05
315 30 0.04
316 36 0.05
317 34 0.05
318 13 0.02
319 81 0.12
320 32 0.05
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (311 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGCGTACGGCGCTCAGCCG
ACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTAC
TACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACAGTGTGCGGGCGTTGAGCTGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCG
GTCCCCTCTACCAGCTGTCGGTCCGCTGCCACAACCCTCGTCTGGCTGGGG
Done.