Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 228 of 402
Found at i:23123178 original size:161 final size:157
Alignment explanation
Indices: 23122073--23123189 Score: 608
Period size: 158 Copynumber: 7.1 Consensus size: 157
23122063 CTTAGACATC
** * * * * * * *
23122073 GAATGAACTTTGTATGCCTAAGCCAACCCACGAAATGAGCGTATGGGCGCTCAGCCGGCCGGAGA
1 GAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCGACCGAAGA
* * * * * * * * * *
23122138 GGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCTCCCTGCGTGCTGTCGATCCTATTGCCGCAA
66 GGCAGAATGCGCAAGCTGGGGATCGACTCGATCCCCCCTGCATGCTGTCGATCCTACTACCACAA
*
23122203 CCCTCGGTCTGGTCCGATCTTAGACTGG
131 CCCTCGGTC-CGTCCGATCTTAGACTGG
* * * ** * *
23122231 GAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGTGT--GTGGCG-TTAAGCCTG-CC-A
1 GAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTACG-GGCGCTCAA-CC-GACCGA
* * * * * * ** *
23122291 GAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCTCTACCTGCTGTCGGGCCTGCTACC
63 -AGAGGCAGAATGCGCAAGCTGGGGATCGACTCGATCCCCCCTGCATGCTGTCGATCCTACTACC
* ** **
23122356 ACAACCCTC-GTCTGGTTGGGGCTTAGACAT--
127 ACAACCCTCGGTC-CGTCCGATCTTAGAC-TGG
* * * * * * *
23122386 GAATGAACTCCTTATGCCTAAGCCAA-CCATGAAATG-GCGTGC-GGCGCTCAGCCG-TCGGAGA
1 GAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCGACCGAAGA
* * * * ** * * *
23122447 GGCAGAATGCGCAAGCGCGGGGATC-AGCCCGGTCCCCCCTGCGTGCTACCGATCCTGCTGCCGC
66 GGCAGAATGCGCAAGC-TGGGGATCGA-CTCGATCCCCCCTGCATGCTGTCGATCCTACTACCAC
* * ** *
23122511 AACCCTCGATCTGGTCTAATGTTAGACTGG
129 AACCCTCGGTC-CGTCCGATCTTAGACTGG
* * * * * * * * * * * *
23122541 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAAC-AGTGTGCGGGTGTTGAGCTGGCC--AGA
1 GAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCGACCGAAGA
* * * * * * * * * * * * *
23122603 GAGCATAACGCGCAAGCCGGGGATGGGCCCGGTCTCCTCTACCA-GCTGTCGGTCC-GCTGCCAC
66 G-GCAGAATGCGCAAGCTGGGGATCGACTCGATCCCCCCT-GCATGCTGTCGATCCTACTACCAC
* * * * **
23122666 AACCCTCAGTCTGGCTAGGGC-TAGACAT-G
129 AACCCTCGGTCCGTC-CGATCTTAGAC-TGG
* * * * * * * * *
23122695 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCTTGCGGGTGC-CTAGCCAACCGGAG
1 GAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTACGGGCGCTC-AACCGACCGAAG
* * * * *
23122759 AGGCAGAATGCGCAAGCCGGGGATCGACTTGATCCCCCCCTGCGTGGTGTCGATCCTACTACCGC
65 AGGCAGAATGCGCAAGCTGGGGATCGACTCGAT-CCCCCCTGCATGCTGTCGATCCTACTACCAC
*
23122824 AACCCTCGGTCGGGTCCGATCTTAGACTGG
129 AACCCTCGGTC-CGTCCGATCTTAGACTGG
* * * * * *
23122854 GAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGCCGGCCGAAGA
1 GAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCGACCGAAGA
* * * * * * * * *
23122919 GGCATAATACGCAAG-TCGGGGATCGGCTCGGTCCCCCTCTGTATGCTGTC-ATCCCATTGCCAT
66 GGCAGAATGCGCAAGCT-GGGGATCGACTCGATCCCCC-CTGCATGCTGTCGATCCTACTACCAC
* * * **
23122982 AACCCTCGGTCTGGCTGGGGCTTAGACAT-G
129 AACCCTCGGTCCGTC-CGATCTTAGAC-TGG
* * * * *
23123012 GAATGAACTCCCTATGCGTAAGCCAACACCATGAAACGGGTGTACGGAGCGCTCAACCGATCGAA
1 GAATGAACTCCGTATGCATAAGCCAAC-CCATGAAACGAGCGTACGG-GCGCTCAACCGACCGAA
* *
23123077 GAAGGCAGAATGCGCAAGCTGGGGATCGACTCGATCCCCCCTGCATGCTGTCGATCCTGCTATCA
64 G-AGGCAGAATGCGCAAGCTGGGGATCGACTCGATCCCCCCTGCATGCTGTCGATCCTACTACCA
* *
23123142 CAACCCTCGGTCCGATCCAATCCTAGACTGG
128 CAACCCTCGGTCCG-TCCGATCTTAGACTGG
23123173 GAATGAACTCCGTATGC
1 GAATGAACTCCGTATGC
23123190 TTAGACTGGG
Statistics
Matches: 735, Mismatches: 179, Indels: 87
0.73 0.18 0.09
Matches are distributed among these distances:
152 21 0.03
153 52 0.07
154 62 0.08
155 78 0.11
156 85 0.12
157 110 0.15
158 114 0.16
159 111 0.15
160 26 0.04
161 74 0.10
162 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCGACCGAAGA
GGCAGAATGCGCAAGCTGGGGATCGACTCGATCCCCCCTGCATGCTGTCGATCCTACTACCACAA
CCCTCGGTCCGTCCGATCTTAGACTGG
Found at i:23123211 original size:25 final size:26
Alignment explanation
Indices: 23123165--23123214 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
23123155 GATCCAATCC
*
23123165 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAAATCCGTATGCT
23123191 TAGACTGGG-ATGAAAAT-CGTATGC
1 TAGACTGGGAATG-AAATCCGTATGC
23123215 CTAAGTCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAAATCCGTATGCT
Found at i:23128066 original size:26 final size:26
Alignment explanation
Indices: 23128029--23128081 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23128019 GTTGACTTAG
*
23128029 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
23128055 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
23128081 G
1 G
23128082 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:23128534 original size:158 final size:159
Alignment explanation
Indices: 23128156--23128547 Score: 389
Period size: 159 Copynumber: 2.5 Consensus size: 159
23128146 CCGGCTTGCA
* * * *
23128156 CATTCTGCCTCTCCGGTCGGCTGAGCGCCTGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGG
1 CATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
* * * ** *
23128221 AGTTCATTCCTTGTCTAAGCCTTAGCCGGATCGAGGGTTGTGGCAGCGGGATCGACAACACAGAA
66 AGTTCATTCCTAGTCTAAGCATCAGCCGGATCGAGGGTTGCAGCAGCAGGATCGACAACACAGAA
* * ** **
23128286 AGAGGGACCGGGTCATTCCCTGGCTTGCG
131 AGAGGGACCAGGTCATCCCCCAGCTTAAG
* * * * * * * ** * *
23128315 CATTATGCCTCTTCGGCCAGCTTAGTGCCCGTACGCTCATTTCATGGGTTAACTTAAGCATACAG
1 CATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
* * * *
23128380 AGTTTATT-CTCAGTCTAAG-ATCAGACCGGA-CTGAGGGTTGCATCAGTAGGATCGACAGCACA
66 AGTTCATTCCT-AGTCTAAGCATCAG-CCGGATC-GAGGGTTGCAGCAGCAGGATCGACAACACA
* * * *
23128442 -CAGGGGGGACTAGGTCGA-CCCCCAGCTTAAG
128 GAAAGAGGGACCAGGTC-ATCCCCCAGCTTAAG
*
23128473 CATTCTACCTCTTCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
1 CATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
23128538 AGTTCATTCC
66 AGTTCATTCC
23128548 ATTTCTAAGC
Statistics
Matches: 180, Mismatches: 48, Indels: 10
0.76 0.20 0.04
Matches are distributed among these distances:
158 85 0.47
159 95 0.53
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.25
Consensus pattern (159 bp):
CATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCTAGTCTAAGCATCAGCCGGATCGAGGGTTGCAGCAGCAGGATCGACAACACAGAA
AGAGGGACCAGGTCATCCCCCAGCTTAAG
Found at i:23128555 original size:158 final size:155
Alignment explanation
Indices: 23128055--23128556 Score: 436
Period size: 158 Copynumber: 3.2 Consensus size: 155
23128045 CCCAGTCTAA
* * * * **
23128055 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACCT-AGGGTTGCGACAACAGGATCGGT
1 GCATACGGAGTTCATT-CCATTCTAAGATTAGACCGGA-CTGAGGGTTGC-ACAGCAGGATCGAC
* * * *
23128119 AGCACGCAGGGGGGACCGGGCCAACCCCCGGCTTGCA-CATTCTGCCTCTCCGGTCGGCTGAGCG
63 AGCACACAGGGGGGACCGGGTC-ACCCCCGGCTT-AAGCATTCTGCCTCTTCGGTCGGCTGAGCG
* *
23128183 CCTGCACGCCCATTTCGTGGGTTGGCTTAG
126 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * ** *
23128213 GCATAGGGAGTTCATTCCTTGTCTAAGCCTTAG-CCGGA-TCGAGGGTTGTGGCAGCGGGATCGA
1 GCATACGGAGTTCATTCCAT-TCTAAG-ATTAGACCGGACT-GAGGGTTG-CACAGCAGGATCGA
* * * * * * ** * * * * *
23128276 CAACACAGAAAGAGGGACCGGGTCATTCCCTGGCTTGCGCATTATGCCTCTTCGGCCAGCTTAGT
62 CAGCACA-CAGGGGGGACCGGGTCA-CCCCCGGCTTAAGCATTCTGCCTCTTCGGTCGGCTGAGC
* * ** *
23128341 GCCCGTACGCTCATTTCATGGGTTAACTTAA
125 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * *
23128372 GCATACAGAGTTTATTCTCAGTCTAAGATCAGACCGGACTGAGGGTTGCATCAGTAGGATCGACA
1 GCATACGGAGTTCATTC-CATTCTAAGATTAGACCGGACTGAGGGTTGCA-CAGCAGGATCGACA
** * *
23128437 GCACACAGGGGGGACTAGGTCGACCCCCAGCTTAAGCATTCTACCTCTTCGGTCGGCTGAGCGCC
64 GCACACAGGGGGGACCGGGTC-ACCCCCGGCTTAAGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
23128502 CGCACGCTCATTTCGTGGGTTGGCTTAG
128 CGCACGCTCATTTCGTGGGTTGGCTTAG
23128530 GCATACGGAGTTCATTCCATTTCTAAG
1 GCATACGGAGTTCATTCCA-TTCTAAG
23128557 CATACGGAGT
Statistics
Matches: 259, Mismatches: 71, Indels: 28
0.72 0.20 0.08
Matches are distributed among these distances:
156 1 0.00
157 4 0.02
158 135 0.52
159 117 0.45
160 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATTCTAAGATTAGACCGGACTGAGGGTTGCACAGCAGGATCGACAGC
ACACAGGGGGGACCGGGTCACCCCCGGCTTAAGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGC
ACGCTCATTTCGTGGGTTGGCTTAG
Found at i:23128608 original size:26 final size:26
Alignment explanation
Indices: 23128530--23128599 Score: 140
Period size: 26 Copynumber: 2.7 Consensus size: 26
23128520 GTTGGCTTAG
23128530 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCATTTCTAA
23128556 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCATTTCTAA
23128582 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
23128600 CAGTCTAAGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATTTCTAA
Found at i:23128966 original size:25 final size:26
Alignment explanation
Indices: 23128937--23128988 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23128927 GTTGACTTAG
23128937 GCATAC-AAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
23128962 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
23128988 G
1 G
23128989 ATCGGATTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:23129877 original size:317 final size:316
Alignment explanation
Indices: 23129018--23129938 Score: 880
Period size: 317 Copynumber: 2.9 Consensus size: 316
23129008 TGCGAAAGCA
* * * ** * * *
23129018 GGATCGACAGCACACAGTGGG-GACCAGGCCGATTCCCAACTTGCGCATTCTGCCTCTTCGGCCA
1 GGATCGACAGCACACAGAGGGCGATCGGGCTAATCCCCGACTTGCGCATTATGCCTCTTCGG-CA
* * * * *
23129082 GCTGAGTGCCTGCACGC-CTATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATT-CCATGTCTA
65 GCTCAGCGCCCGCACGCTC-ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTA
** * * *
23129145 AGCCCCAG-CCGGACCGAGGGTTGTGGCAGC-GAGATTAGAC-GTATGCA-TGGGGGACCGAGCC
128 AG-ATCAGACCAGACCGAGGGTTGTGGCAGCAG-GA-TCGACAGTATGCAGTGGGGGACCGAGCT
* * * * * * * *
23129206 GATCCTCGGCTTGCGCATTCTACCTCTTCGATCAGATGAGCACCCATACACTCGTTTCATGGGTT
190 GATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTT
* * * * *
23129271 GACTTAGG-ATAGGGAGTTCATTGCATGTGTAAGCTCCAGTCGGACCGAGGTTGTGGCAGCG
255 GACTTAGGCATAGAGAGTTCATTGCATGTCTAAGCCCCAGCCAGACCGAGGTTGTGGCAGCG
*** * * * * *
23129332 GGATCGACAGCATGTAGAGGGCGATCGGGCTGATCCCTGGCTTGCGTATTATGCCTCTCCGGCTA
1 GGATCGACAGCACACAGAGGGCGATCGGGCTAATCCCCGACTTGCGCATTATGCCTCTTCGGC-A
* * * ** ** *
23129397 GCTCAACACTCGCACAATCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAG
65 GCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * ** * *
23129462 ATCAGATCAGACCGAGGGTTGCGATAGTAGGATCGGACCA-TATGTAGT-GGGGACCGAGCTGAT
130 ATCAGACCAGACCGAGGGTTGTGGCAGCAGGATC-GA-CAGTATGCAGTGGGGGACCGAGCTGAT
* * * * * * ** * * *
23129525 CCCCAGCTTGTACATTTTGCCTTTCCGACCGGCTGAGTGCCCGCATGCTCGTTTCGTGGGTTGGC
193 CCTCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGAC
* * * *
23129590 TTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGTCTGTG
258 TTAGGCATAGAGAGTTCATTGCATGTCTAAGCCCCAGCCAGACCGA-GGTTGTGGCAGCG
* *
23129650 GGA-CGATAGCACACAGAGGGGGATCGGG-TCAATCCCCGACTTGCGCATTATGCCTCTTCGGTC
1 GGATCGACAGCACACAGAGGGCGATCGGGCT-AATCCCCGACTTGCGCATTATGCCTCTTCGG-C
* * *
23129713 GGCTCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAA
64 AGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
23129778 GATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGTGGGGGACCGAGCTGATC
129 GATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGTATGCAGTGGGGGACCGAGCTGATC
* * * * * *
23129843 CTCGGCTTGTGCATTCTGTCTCACC-AGTCGGCTGAGCACCCGTACGCTCGTTTTGTTGATTAAC
194 CTCGGCTTGTGCATTCTGCCTCTCCGA-TCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGAC
*
23129907 TTAGGCATACAGAGTTCATCTGCA-GTCTAAGC
258 TTAGGCATAGAGAGTTCAT-TGCATGTCTAAGC
23129939 ATACGAAGTT
Statistics
Matches: 475, Mismatches: 114, Indels: 33
0.76 0.18 0.05
Matches are distributed among these distances:
314 22 0.05
315 99 0.21
316 85 0.18
317 252 0.53
318 17 0.04
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (316 bp):
GGATCGACAGCACACAGAGGGCGATCGGGCTAATCCCCGACTTGCGCATTATGCCTCTTCGGCAG
CTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGTATGCAGTGGGGGACCGAGCTGATCCT
CGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTA
GGCATAGAGAGTTCATTGCATGTCTAAGCCCCAGCCAGACCGAGGTTGTGGCAGCG
Found at i:23129915 original size:159 final size:158
Alignment explanation
Indices: 23128962--23130436 Score: 545
Period size: 158 Copynumber: 9.2 Consensus size: 158
23128952 CCCAATCTAA
* *** ** * * * *
23128962 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGGTCAAGGGTTGCGAAAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGTAGGATCGACA
* * * ** * * * * * *
23129027 GCACACAGT-GGGGACC-AGGCCGATTCCCAACTTGCGCATTCTGCCTCTTCGGCCAGCTGAGTG
66 GCACGCAGTGGGGGACCGA-GCTGATCCCCGGCTTGTGCATTATGCCTC-TCCGTCGGCTGAGCG
* * * *
23129090 CCTGCACGC-CTATTTCGTGGGTTGGCTTAG
129 CCCGTACGCTC-GTTTCGTGGGTTGACTTAG
* ** * * * *
23129120 GCATAAGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAG-CGAGATTA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGACAGTAG-GA-TC
* * * * * * * * * *
23129182 GAC-GTATGCA-TGGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTACCTCTTCGATCAGATGA
62 GACAGCACGCAGTGGGGGACCGAGCTGATCCCCGGCTTGTGCATTATGCCTCTCCG-TCGGCTGA
* * * *
23129245 GCACCCATACACTCGTTTCATGGGTTGACTTAG
126 GCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * * **
23129278 G-ATAGGGAGTTCATT-GCATGTGTAAGCTCCAG-TCGGACCGA-GGTTGTGGCAGCGGGATCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGAT-CAGACCAGACCGAGGGTTGTGACAGTAGGATCGA
* * * * * * * * * * * * *
23129339 CAGCATGTAGAGGGCGATCGGGCTGATCCCTGGCTTGCGTATTATGCCTCTCCGGCTAGCTCAAC
64 CAGCACGCAGTGGGGGACCGAGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGTC-GGCTGAGC
* * * ** * **
23129404 ACTCGCACAATCATTTTATGGGTTGACTTAG
128 GCCCGTACGCTCGTTTCGTGGGTTGACTTAG
* * * *
23129435 GCATACGGAGTTCATTCCCAGTGTAAGATCAGATCAGACCGAGGGTTGCGATAGTAGGATCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGTAGGATC-GA-
* * * * * * * * *
23129500 CA-TATGTAGT-GGGGACCGAGCTGATCCCCAGCTTGTACATTTTGCCTTTCCGACCGGCTGAGT
64 CAGCACGCAGTGGGGGACCGAGCTGATCCCCGGCTTGTGCATTATGCCTCTCCG-TCGGCTGAGC
* * *
23129563 GCCCGCATGCTCGTTTCGTGGGTTGGCTTAG
128 GCCCGTACGCTCGTTTCGTGGGTTGACTTAG
** * * *
23129594 GCATA-GAGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGTCTGTGGGA-CG
1 GCATACG-GAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGACAGTAGGATCG
* * * * * * * * * *
23129655 ATAGCACACAGAGGGGGATCG-GGTCAATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTCA
63 ACAGCACGCAGTGGGGGACCGAGCT-GATCCCCGGCTTGTGCATTATGCCTC-TCCGTCGGCTGA
* *
23129719 GCGCCCGTACGCTCATTTCGTGGGTTGACTTAT
126 GCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
* *
23129752 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGTAGGATCGACA
* * * * *
23129817 GCACGCAGTGGGGGACCGAGCTGATCCTCGGCTTGTGCATTCTGTCTCACCAGTCGGCTGAGCAC
66 GCACGCAGTGGGGGACCGAGCTGATCCCCGGCTTGTGCATTATGCCTCTCC-GTCGGCTGAGCGC
* * * *
23129882 CCGTACGCTCGTTTTGTTGATTAACTTAG
130 CCGTACGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
23129911 GCATACAGAGTTCA-TCTGCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCG-G
1 GCATACGGAGTTCATTC-CCAGTCTAAG-AT-C--AG---A---CCAGAC--CGA--GGGTTGTG
* * * *
23129974 ACTGAGGGTTGCGA-CAGTAGGATCGATAGCACGCAG-GGGGGACCGAGCCGATCCTCGGCTTGC
51 AC--A--GTAG-GATC-G----A-C---AGCACGCAGTGGGGGACCGAGCTGATCCCCGGCTTGT
* * * * * * * **
23130037 GCATTCTACCACTCCGGCCAGCTGAGCGCCCGCACGGC-CATTTCGTGGAAATG-CTTAG
102 GCATTATGCCTCTCC-GTCGGCTGAGCGCCCGTAC-GCTCGTTTCGTGG-GTTGACTTAG
* ** * * ** **
23130095 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTA--GGACCGGAGGGTTTGTGGCAGCGGGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAG-ACCAGACC-GAGGG-TTGTGACAGTAGGAT
* * * * * * *
23130157 CGACAGCACGCAGAGAGGGATCGAG-TCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACT
61 CGACAGCACGCAGTGGGGGACCGAGCT-GATCCCCGGCTTGTGCATTATGCCTCTCCG-TCGGCT
* * * * * *
23130221 CAACGCTCGCACACTCGTCTCGT-GGTTGACTTAG
124 GAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
23130255 GCATACGGAGTTCATTCCCTGTCTAAGATC-GACCAGACCAAGGGTTGTGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGTAGGATCGACA
* * * * * * * * *
23130319 GGATGTAG-GGGGGACAG-GCCGATCCCCGGCTCGTGCA-TCTGCCTCTCCGATCGGCCGAGCAC
66 GCACGCAGTGGGGGACCGAGCTGATCCCCGGCTTGTGCATTATGCCTCTCCG-TCGGCTGAGCGC
* * * *
23130381 CTGTACGCTCATTCCGTGGGTTGGCTTAG
130 CCGTACGCTCGTTTCGTGGGTTGACTTAG
23130410 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
23130437 CATATGGAGT
Statistics
Matches: 982, Mismatches: 254, Indels: 165
0.70 0.18 0.12
Matches are distributed among these distances:
154 30 0.03
155 52 0.05
156 27 0.03
157 140 0.14
158 245 0.25
159 230 0.23
160 55 0.06
161 57 0.06
163 3 0.00
164 1 0.00
166 1 0.00
168 2 0.00
169 8 0.01
171 5 0.01
172 4 0.00
173 8 0.01
174 3 0.00
176 3 0.00
177 3 0.00
179 1 0.00
181 3 0.00
182 1 0.00
183 3 0.00
184 83 0.08
185 14 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGTAGGATCGACA
GCACGCAGTGGGGGACCGAGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGTCGGCTGAGCGCC
CGTACGCTCGTTTCGTGGGTTGACTTAG
Found at i:23130108 original size:184 final size:184
Alignment explanation
Indices: 23129752--23130122 Score: 435
Period size: 184 Copynumber: 2.0 Consensus size: 184
23129742 GTTGACTTAT
* * *
23129752 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * ** * * *
23129817 GCACGCAGTGGGGGACCGAGCTGATCCTCGGCTTGTGCATTCTGTCTCACCAGTCGGCTGAGCAC
66 GCACGCAGTGGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTACCACACCAGCCAGCTGAGCAC
* * * * *
23129882 CCGTACGCTCGTTTTGTTGATTAACTTAGGCATACAGAGTTCATCTGCA-GTCTAA
131 CCGCACGCTCATTTCGTGGA-TAACTTAGGCATACAGAGTTCAT-TCCATGTCTAA
* * * * * *
23129937 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGACAGTAGGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * *
23130002 GCACGCAG-GGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTACCACTCCGGCCAGCTGAGCGC
66 GCACGCAGTGGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTACCACACCAGCCAGCTGAGCAC
**
23130066 CCGCACGGC-CATTTCGTGGA-AATGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
131 CCGCAC-GCTCATTTCGTGGATAA--CTTAGGCATACAGAGTTCATTCCATGTCTAA
23130121 GC
1 GC
23130123 CCCAGTAGGA
Statistics
Matches: 156, Mismatches: 26, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
182 2 0.01
183 3 0.02
184 85 0.54
185 66 0.42
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (184 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGTGGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTACCACACCAGCCAGCTGAGCAC
CCGCACGCTCATTTCGTGGATAACTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:23130497 original size:499 final size:501
Alignment explanation
Indices: 23129564--23130647 Score: 1251
Period size: 499 Copynumber: 2.2 Consensus size: 501
23129554 CGGCTGAGTG
* * ** * *
23129564 CCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGCC
1 CCCGCACGCTCATTTCGTGGAATCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * * * *
23129629 AGACCGAGGGTTGTGTCTGTGGGACGATAGCACACAGAGGGGGATCGGGTCAATCCCCGACTTGC
66 AGACCGAGGGTTGTGGCAGGGGGACGACAGCACACAGAGAGGGATCGAGTCAATCCCCGACTTGC
* ** * * * * * *
23129694 GCATTATGCCTCTTCGGTCGGCTCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTATGCATACG
131 GCATTATGCCTCTCCGACCGACTCAACGCCCGCACACTCATCTCGTGGGTTGACTTAGGCATACG
*
23129759 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
196 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGGATCGACAGCACGCA
* * * * * *
23129824 GTGGGGGACCGAGCTGATCCTCGGCTTGTGCATTCTGTCTCACCAGTCGGCTGAGCACCCGTACG
261 GTGGGGGACAGAGCCGATCCCCGGCTCGTGCATTCTGCCTCACCAGTCGGCCGAGCACCCGTACG
* ** * *
23129889 CTCGTTTTGTTGATTAACTTAGGCATACAGAGTTCATCTGCAGTCTAAGCATACGAAGTTCATTC
326 CTCATTCCGTGGATTAACTTAGGCATACAGAGTTCATCTCCAGTCTAAGCATACGAAGTTCATTC
* * * * * *
23129954 CCAGTCTAAGATCGGATCGGACTGAGGGTTGCGACAGTAGGATCGATAGCACGCAGGGGGGACCG
391 CCAGTCTAAGATCGAACCAGACTGAGGGTTGCGACAGCAGGATCGATAGCACGCAAGAGGGACCG
* * *
23130019 AGCCGAT-CCTCGGCTTGCGCATTCTACCACTCCGGCC-AGCTGAGCG
456 AGCCGATCCCT-AGCTTGCGCATTCTACCACTCCGGCCGA-CTAAGCA
23130065 CCCGCACGGC-CATTTCGTGGAAAT-GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
1 CCCGCAC-GCTCATTTCGTGG-AATCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* * * *
23130128 -TAGGACCGGAGGGTTTGTGGCAGCGGGGCCGACAGCACGCAGAGAGGGATCGAGTCGATCCCCG
64 CCA-GACC-GAGGG-TTGTGGCAG-GGGGACGACAGCACACAGAGAGGGATCGAGTCAATCCCCG
* *
23130192 ACTTGCGCATTATGCCTCTCCGACCGACTCAACGCTCGCACACTCGTCTCGT-GGTTGACTTAGG
125 ACTTGCGCATTATGCCTCTCCGACCGACTCAACGCCCGCACACTCATCTCGTGGGTTGACTTAGG
* *
23130256 CATACGGAGTTCATTCCCTGTCTAAGATC-GACCAGACCAAGGGTTGTGGCAGCAGGATCGATAG
190 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGGATCGACAG
* * * *
23130320 GATGTAG-GGGGGACAG-GCCGATCCCCGGCTCGTGCA-TCTGCCTCTCC-GATCGGCCGAGCAC
255 CACGCAGTGGGGGACAGAGCCGATCCCCGGCTCGTGCATTCTGCCTCACCAG-TCGGCCGAGCAC
* * ** * * *
23130381 CTGTACGCTCATTCCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATATGGA
319 CCGTACGCTCATTCCGTGGATTAACTTAGGCATACAGAGTTCATCTCCA-GTCTAAGCATACGAA
* * * * *
23130445 GTTCATTCCTAGTTTAAGATCGAACCAGA-TCGATGGTTGCGGCAGCAGGATCGGTAGCACGCAA
383 GTTCATTCCCAGTCTAAGATCGAACCAGACT-GAGGGTTGCGACAGCAGGATCGATAGCACGCAA
* * * * *
23130509 GAGGGACCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGGTCGATTAAGCA
447 GAGGGACCGAGCCGATCCCTAGCTTGCGCATTCTACCACTCCGGCCGACTAAGCA
* ** * * * *
23130564 CCCGCACGCTCGTTTCGTGGGTTCGCTTAGGCATACGAAGTTCATTCCACGTCTAAGCCCCTGCC
1 CCCGCACGCTCATTTCGTGGAATCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
*
23130629 -GAACCTAGGGTTGTGGCAG
66 AG-ACCGAGGGTTGTGGCAG
23130648 TAGGACAAGC
Statistics
Matches: 489, Mismatches: 79, Indels: 34
0.81 0.13 0.06
Matches are distributed among these distances:
497 9 0.02
498 13 0.03
499 214 0.44
500 22 0.04
501 65 0.13
502 45 0.09
503 46 0.09
504 75 0.15
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (501 bp):
CCCGCACGCTCATTTCGTGGAATCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
AGACCGAGGGTTGTGGCAGGGGGACGACAGCACACAGAGAGGGATCGAGTCAATCCCCGACTTGC
GCATTATGCCTCTCCGACCGACTCAACGCCCGCACACTCATCTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGGATCGACAGCACGCA
GTGGGGGACAGAGCCGATCCCCGGCTCGTGCATTCTGCCTCACCAGTCGGCCGAGCACCCGTACG
CTCATTCCGTGGATTAACTTAGGCATACAGAGTTCATCTCCAGTCTAAGCATACGAAGTTCATTC
CCAGTCTAAGATCGAACCAGACTGAGGGTTGCGACAGCAGGATCGATAGCACGCAAGAGGGACCG
AGCCGATCCCTAGCTTGCGCATTCTACCACTCCGGCCGACTAAGCA
Found at i:23130594 original size:184 final size:181
Alignment explanation
Indices: 23130255--23130621 Score: 430
Period size: 184 Copynumber: 2.0 Consensus size: 181
23130245 GTTGACTTAG
*
23130255 GCATACGGAGTTCATTCCCTGTCTAAGATCGACCAGACCAAGGGTTGTGGCAGCAGGATCGATAG
1 GCATACGGAGTTCATTCCCTGTCTAAGATCGACCAGACCAAGGGTTGCGGCAGCAGGATCGATAG
* * * * * * * * * * *
23130320 GATGTAGGGGGGACAGGCCGATCCCCGGCTCGTGCATCTGCCTCTCCGATCGGCCGAGCACCTGT
66 CACGCAAGAGGGACAGGCCGATCCCCAGCTCGCGCATCTGCCTCTCCGATCGACCAAGCACCCGC
* * *
23130385 ACGCTCATTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 ACGCTCATTCCGTGGGTTCGCTTAGGCATACGAAGTTCATTCCACGTCTAA
* * * * * *
23130436 GCATATGGAGTTCATT-CCTAGTTTAAGATCGAACCAGATCGATGGTTGCGGCAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCT-GTCTAAGATCG-ACCAGACCAAGGGTTGCGGCAGCAGGATCGAT
* * * * **
23130500 AGCACGCAAGAGGGACCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGGTCGATTAAGCAC
64 AGCACGCAAGAGGGA-CAGGCCGATCCCCAGCTCGCGCA-TCTGCCTCTCCGATCGACCAAGCAC
* *
23130565 CCGCACGCTCGTTTCGTGGGTTCGCTTAGGCATACGAAGTTCATTCCACGTCTAA
127 CCGCACGCTCATTCCGTGGGTTCGCTTAGGCATACGAAGTTCATTCCACGTCTAA
23130620 GC
1 GC
23130622 CCCTGCCGAA
Statistics
Matches: 153, Mismatches: 29, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
180 3 0.02
181 25 0.16
182 37 0.24
183 18 0.12
184 70 0.46
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (181 bp):
GCATACGGAGTTCATTCCCTGTCTAAGATCGACCAGACCAAGGGTTGCGGCAGCAGGATCGATAG
CACGCAAGAGGGACAGGCCGATCCCCAGCTCGCGCATCTGCCTCTCCGATCGACCAAGCACCCGC
ACGCTCATTCCGTGGGTTCGCTTAGGCATACGAAGTTCATTCCACGTCTAA
Found at i:23130661 original size:12 final size:12
Alignment explanation
Indices: 23130644--23130676 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
23130634 TAGGGTTGTG
23130644 GCAGTAGGACAA
1 GCAGTAGGACAA
*
23130656 GCAGTAGGACCA
1 GCAGTAGGACAA
23130668 GCAGTAGGA
1 GCAGTAGGA
23130677 TCGGCAACAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.36, C:0.18, G:0.36, T:0.09
Consensus pattern (12 bp):
GCAGTAGGACAA
Found at i:23130827 original size:26 final size:26
Alignment explanation
Indices: 23130777--23130829 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23130767 GTTGACTCAG
*
23130777 GCATACGGAGTTCATCCTCAGTCTAA
1 GCATACGGAGTTCATCCTCAATCTAA
23130803 GCATACGGAGTTCATTCC-CAATCTAA
1 GCATACGGAGTTCA-TCCTCAATCTAA
23130829 G
1 G
23130830 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAATCTAA
Found at i:23131320 original size:157 final size:155
Alignment explanation
Indices: 23130887--23131323 Score: 419
Period size: 157 Copynumber: 2.8 Consensus size: 155
23130877 GGGACCGAGC
* * * * * * *
23130887 CGATCCCCGGCTTGCGCATTCTACCTCTCTGACCGGCTGAGCGCCTGTACGCCCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACG-CTGTTTCGTGGGT
* * * * * ***
23130952 TAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGTTTGTGGCTGTGG
65 TGGCTTAGGCATA-GGAGTTCATTCCATGTCTAA-CCCCAGTCGGACCGAGGGTTGCGGCAGCAA
*
23131017 GATAGGCAGCATGCAGAGGGGGATCAGGT
128 GATAGACAGCATGCA-AGGGGGATCAGGT
* * * * * *
23131046 CAATCCCCGGCTTGCGCATTATGCATCTCCGGCTGGCTCAGTGCCCGCACGCTCATTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGCT-GTTTCGTGGGT
* * * ***** *
23131111 TGACTTAGGTATACGGAGTTCGTTCCCA-GTCTAAGATTGGATCGGACTGAGGGTTGCGGCAGCA
65 TGGCTTAGGCATA-GGAGTTCATT-CCATGTCTAACCCCAG-TCGGACCGAGGGTTGCGGCAGCA
* * *
23131175 AGATCGATAGCATGC-AGGGGGATCGGGT
127 AGATAGACAGCATGCAAGGGGGATCAGGT
* * * *
23131203 CGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGACTGAGTGCCCGCACGCATGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGC-TGTTTCGTGGGT
23131268 TGGCTTAGGCATAGAGAGTTCATTCCATGTCTAACCCCCAGTCGGACCGAGGGTTG
65 TGGCTTAGGCATAG-GAGTTCATTCCATGTCTAA-CCCCAGTCGGACCGAGGGTTG
23131324 TGACTGCGAG
Statistics
Matches: 217, Mismatches: 54, Indels: 16
0.76 0.19 0.06
Matches are distributed among these distances:
156 4 0.02
157 104 0.48
158 4 0.02
159 102 0.47
160 3 0.01
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.25
Consensus pattern (155 bp):
CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGCTGTTTCGTGGGTT
GGCTTAGGCATAGGAGTTCATTCCATGTCTAACCCCAGTCGGACCGAGGGTTGCGGCAGCAAGAT
AGACAGCATGCAAGGGGGATCAGGT
Found at i:23131752 original size:685 final size:685
Alignment explanation
Indices: 23130748--23131987 Score: 1627
Period size: 685 Copynumber: 1.8 Consensus size: 685
23130738 TCTGAGCGAT
* *
23130748 CGCACGCTCGTTTTCGTGGGTTGACTCAGGCATACGGAGTTCATCCTCAGTCTAAGCATACGGAG
1 CGCACGCTCGTTTTCGTGGGCTGACTCAGGCATACGGAGTTCATCCTCAGTCTAAGCATACAGAG
* *
23130813 TTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGTACAGAGTG
66 TTCATTCCCAATCTAAGATCAGACAAGACCGAGGGTTACGACAGCAGGATCGACAGTACAGAGGG
* * * * * *
23130878 GGACCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCTGACCGGCTGAGCGCCTGTACGCCCGT
131 GGACCGAGCCGATCCCAGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCACCCGCACGCCCAT
* * * * *
23130943 TTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGTTTG
196 TTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAGCCAGACCGAGGGTTG
* * * *
23131008 TGGCTGTGGGATAGGCAGCATGCAGAGGGGGATCAGGTCAATCCCCGGCTTGCGCATTATGCATC
261 TGGCAGTGGGATAGGCAGCACGCAGAGGGAGACCAGGTCAATCCCCGGCTTGCGCATTATGCATC
* ** * * *
23131073 TCCG-GCTGGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGTATACGGAGTTCGTTCC
326 TCCGATC-GGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC
* * ** * * * * * *
23131137 CAGTCTAAGATTGGATCGGACTGAGGGTT-GCGGCAGCAAGATCGATAGCATGCA-GGGGGATCG
390 CAGTCTAAGATCGGACCGGACCCAGGGTTAGC-ACAACAAGATCGACAGAATGCAGGGGGGACCA
* ** *
23131200 GGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGACTGAGTGCCCGCACGCAT-GTTTCAT
454 GGCCGATCCAAGACTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACG-ATCGTTTCAT
*
23131264 GGGTTGGCTTAGGCATA-GAGAGTTCATTCCATGTCTAACCCCCAGTCGGACCGAGGGTTGTGAC
518 GGGTTAGCTTAGGCATACG-GAGTTCATTCCATGTCTAACCCCCAGTCGGACCGAGGGTTGTGAC
23131328 TGCGAGACCGGCAATGGGATTGGCAGCATGCGGAGGGGGACCGAGCTGATCCTCAGCTTGCGCAT
582 TGCGAGACCGGCAATGGGATTGGCAGCATGCGGAGGGGGACCGAGCTGATCCTCAGCTTGCGCAT
23131393 TATGCCTCTCTGGCTGGCCTCTTTGGCCGGTTGAGCACC
647 TATGCCTCTCTGGCTGGCCTCTTTGGCCGGTTGAGCACC
* *
23131432 CGCACGCTTG-TTTCGTGGGCTGACTTAGGCATACGGAGTTCATCAC-CAGTCTAAGCATACAGA
1 CGCACGCTCGTTTTCGTGGGCTGACTCAGGCATACGGAGTTCATC-CTCAGTCTAAGCATACAGA
* * * * * *
23131495 GTTCATTCCCATTCTAAGATC-GA-AAGGAATCGAGGGTTGCGGCAGTAGGATCGGCAGTACGCA
65 GTTCATTCCCAATCTAAGATCAGACAA-G-ACCGAGGGTTACGACAGCAGGATCGACAGTA--CA
* * * * ** *
23131558 GGGGGGGATCGGGCCGATCCCAGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACT
126 GAGGGGGACCGAGCCGATCCCAGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCACCCGCACG
* *
23131623 CCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAGCCAGACCGAG
191 CCCATTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAGCCAGACCGAG
* * * *
23131688 GGTTGTGGCAGTGGGACT-GGCAGCACGTAGAGGGAGACCGGGTCGATCCCCGGCTTGTGCATTA
256 GGTTGTGGCAGTGGGA-TAGGCAGCACGCAGAGGGAGACCAGGTCAATCCCCGGCTTGCGCATTA
* * * * * * *
23131752 TGCCTCTTCGATCGGCTCAACGCCTGCTCGCTCGTTTCGTGGGTTGACTTATGCGTACAGAGTTC
320 TGCATCTCCGATCGGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTC
* * *
23131817 ATTCCCAGTCTGAGATCGGACCGGACCCAGGGTTATCACAACAGGATCGACAGAATGCAGGGGGG
385 ATTCCCAGTCTAAGATCGGACCGGACCCAGGGTTAGCACAACAAGATCGACAGAATGCAGGGGGG
* ** * *
23131882 ACCAGGCCGATCCAAGGCTTGTGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGTACGTTCGTTT
450 ACCAGGCCGATCCAAGACTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGATCGTTT
*
23131947 CATGGGTTAGCTTAGGCATACGTAGTTCATTCCATGTCTAA
515 CATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAA
23131988 GCATACAGAG
Statistics
Matches: 468, Mismatches: 77, Indels: 20
0.83 0.14 0.04
Matches are distributed among these distances:
681 1 0.00
682 3 0.01
683 94 0.20
684 10 0.02
685 262 0.56
686 97 0.21
687 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (685 bp):
CGCACGCTCGTTTTCGTGGGCTGACTCAGGCATACGGAGTTCATCCTCAGTCTAAGCATACAGAG
TTCATTCCCAATCTAAGATCAGACAAGACCGAGGGTTACGACAGCAGGATCGACAGTACAGAGGG
GGACCGAGCCGATCCCAGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCACCCGCACGCCCAT
TTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAGCCAGACCGAGGGTTG
TGGCAGTGGGATAGGCAGCACGCAGAGGGAGACCAGGTCAATCCCCGGCTTGCGCATTATGCATC
TCCGATCGGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCC
AGTCTAAGATCGGACCGGACCCAGGGTTAGCACAACAAGATCGACAGAATGCAGGGGGGACCAGG
CCGATCCAAGACTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGATCGTTTCATGGG
TTAGCTTAGGCATACGGAGTTCATTCCATGTCTAACCCCCAGTCGGACCGAGGGTTGTGACTGCG
AGACCGGCAATGGGATTGGCAGCATGCGGAGGGGGACCGAGCTGATCCTCAGCTTGCGCATTATG
CCTCTCTGGCTGGCCTCTTTGGCCGGTTGAGCACC
Found at i:23131992 original size:26 final size:26
Alignment explanation
Indices: 23131962--23132014 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
23131952 GTTAGCTTAG
23131962 GCATAC-GTAGTTCATTCC-ATGTCTAA
1 GCATACAG-AGTTCATTCCTA-GTCTAA
23131988 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
23132014 G
1 G
23132015 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:23133340 original size:181 final size:179
Alignment explanation
Indices: 23133031--23133391 Score: 456
Period size: 181 Copynumber: 2.0 Consensus size: 179
23133021 CTTAGGCATA
* * ** * *
23133031 CATAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTGGTAGTAGGATCGATGCGCGC
1 CATAGTTCATTCCCAGTCTAAGATAGGATCAGACCGAGGGTTGCGACAGCAGGATCGATGCACGC
* * * * *
23133096 AGGGGGGATCGCGCCGATCCCCGGCTTGCACACTCTGCCTCTTCGATCGGCTGAGCACCCGCACG
66 AGGGGGGACCGCGCCGATCCCCGGCTGGCACACTCTGCCTCTCCGATCAGCTGAGCACCCGCACA
* *
23133161 CTCATTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
131 CTCATTTCATGGGTTAGCTTAGGCATACGAAATTCATTCCATGTCTAAG
* *
23133210 CATATGTTCATTCCCAGTCTAAGATAGGATCGGATCGAGGGTTGCGACAGCAGGATCGACAT-CA
1 CATA-GTTCATTCCCAGTCTAAGATAGGATCAGACCGAGGGTTGCGACAGCAGGATCG--ATGCA
* * * * * **
23133274 TGCAGGGGGGACCGGGCCGATCCCCGGCTGGCGCATTCTGCCTCTCC-AGCTAGCTGAGTGCCCG
63 CGCAGGGGGGACCGCGCCGATCCCCGGCTGGCACACTCTGCCTCTCCGATC-AGCTGAGCACCCG
* *
23133338 CACACTCATTTCGTGGGTTGGCTTAGGCATACGAAATTCATTCCATGTCTAAG
127 CACACTCATTTCATGGGTTAGCTTAGGCATACGAAATTCATTCCATGTCTAAG
23133391 C
1 C
23133392 CCCAGCTAGA
Statistics
Matches: 154, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
179 4 0.03
180 48 0.31
181 100 0.65
182 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (179 bp):
CATAGTTCATTCCCAGTCTAAGATAGGATCAGACCGAGGGTTGCGACAGCAGGATCGATGCACGC
AGGGGGGACCGCGCCGATCCCCGGCTGGCACACTCTGCCTCTCCGATCAGCTGAGCACCCGCACA
CTCATTTCATGGGTTAGCTTAGGCATACGAAATTCATTCCATGTCTAAG
Found at i:23133580 original size:26 final size:26
Alignment explanation
Indices: 23133550--23133602 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23133540 GTAGACTTAG
*
23133550 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATACCCAATCTAA
*
23133576 GCATACAGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAATCTAA
23133602 G
1 G
23133603 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAATCTAA
Found at i:23133936 original size:159 final size:156
Alignment explanation
Indices: 23133577--23134076 Score: 361
Period size: 159 Copynumber: 3.2 Consensus size: 156
23133567 CCAATCTAAG
* * * ** * * *
23133577 CATACAGAGTTCATACCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCTGCAGGATCGATAG
1 CATACGGAGTTCATTCCCAGTCTAAGAT-TGACCAGATCGAGGGTTGTGGCAGCAGGATCGACAG
* * ** **
23133642 CACGTAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCTTG
65 CACGTAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCAATCGGCTGAGCGCCCG
* *
23133707 CACGTCTGTTTCATGGGTTGGCTTAGG
130 CACGTCTGTTTCATGGGTTGACTTAGA
* ** * *
23133734 CATAGGGAGTTCATT-CCATGTCTAAGCCCCTG-TCAGATTGAGGGTTGTGGCAGC-GAGA-CTG
1 CATACGGAGTTCATTCCCA-GTCTAAG--ATTGACCAGATCGAGGGTTGTGGCAGCAG-GATC-G
* * *
23133795 GCAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTTCAATCGTCTCG-
61 ACAGCACGT--AGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCAATCGGCT-GA
* **
23133859 GTGCCCGCACG-CTCGTTTCATGGGTTGACTTTTA
123 GCGCCCGCACGTCT-GTTTCATGGGTTGACTTAGA
* ** * *
23133893 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTATGGTGGTAGGATCGACAA
1 CATACGGAGTTCATTCCCAGTCTAAGATT-GACCAGATCGAGGGTTGTGGCAGCAGGATCGACAG
** * * * * * * **** * *
23133958 CACACAGGGGGGACCAGGTCGATCCCCGACTTGCGCATTCTACCTCTCTGGCCTGCTGAGCGCCT
65 CACGTA-GGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCAATCGGCTGAGCGCCC
* *
23134023 GCACG-CTCATTTCATGGGTTG-CTTTAGG
129 GCACGTCT-GTTTCATGGGTTGAC-TTAGA
*
23134051 CATACAGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
23134077 CATACGGAGT
Statistics
Matches: 265, Mismatches: 60, Indels: 35
0.74 0.17 0.10
Matches are distributed among these distances:
156 5 0.02
157 52 0.20
158 88 0.33
159 114 0.43
160 6 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.26
Consensus pattern (156 bp):
CATACGGAGTTCATTCCCAGTCTAAGATTGACCAGATCGAGGGTTGTGGCAGCAGGATCGACAGC
ACGTAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCAATCGGCTGAGCGCCCGC
ACGTCTGTTTCATGGGTTGACTTAGA
Found at i:23134080 original size:26 final size:26
Alignment explanation
Indices: 23134050--23134102 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23134040 GTTGCTTTAG
23134050 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
23134076 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
23134102 G
1 G
23134103 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:23134720 original size:26 final size:26
Alignment explanation
Indices: 23134690--23134742 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23134680 GTTGGCTTAG
*
23134690 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
23134716 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
23134742 G
1 G
23134743 ATCAGAGCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:23134916 original size:26 final size:26
Alignment explanation
Indices: 23134886--23134938 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23134876 GTTGACTTAG
*
23134886 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23134912 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23134938 G
1 G
23134939 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23135212 original size:158 final size:158
Alignment explanation
Indices: 23134912--23135412 Score: 406
Period size: 158 Copynumber: 3.2 Consensus size: 158
23134902 CCCAGTCTAA
* * ** * ** * * *
23134912 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACC-AAGGGTTACGGCAGTAGGATCGG
1 GCATACGAAGTTCATT-CCATGTCTAAGACCCCACCGGACCGAA-GGTTGTGGCAGCAAGATCGA
* *** * * * * * * *
23134975 CAGCACGCAGGGGGGACCGGGCTGCTCCCCGACTTGCGCATTCTGCCTCTCCCACGGGCTGAG-T
64 CAGCACGCAGGGGGGACCGAGCCAATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTAAGCA
* * * *
23135039 GCCTGCAC-TCCCGTTTCTTGGATTGGCTTAG
129 CCCT-CACAT-TCGTTTCATGGGTTGGCTTAG
* * * ** *
23135070 GCATAGGGAGTTCATTCCATGTCTAA-ACCCCAGCCGGACCGAGGGTTGTGGCAGCGGGA-CTGG
1 GCATACGAAGTTCATTCCATGTCTAAGACCCCA-CCGGACCGAAGGTTGTGGCAGCAAGATC-GA
* * * * * *
23135133 TAGCACGTAGAGGGGGACCGAGCCAATCCCCGGCTTACGCATTGTGCCTCTCCGATCGGCTCAGC
64 CAGCACGCAG-GGGGGACCGAGCCAATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTAAGC
* * * *
23135198 ACCGT-ACATTCGTTTCGTGGGTTGACTTAT
128 ACCCTCACATTCGTTTCATGGGTTGGCTTAG
* * ** *
23135228 GCATACGAAGTTCATTCCCA-ATCTAAGATCGGACTGGACCGAAGGTTGTGGCAGCAAGATCGAC
1 GCATACGAAGTTCATT-CCATGTCTAAGACCCCACCGGACCGAAGGTTGTGGCAGCAAGATCGAC
* * **
23135292 AGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTAAGTGC
65 AGCACGCAGGGGGGACCGAGCCAATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTAAGCAC
**
23135357 CCTCACATTCAATTCATGGGTTGGCTTAG
130 CCTCACATTCGTTTCATGGGTTGGCTTAG
23135386 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCATGTCTAAG
23135413 CATACAGAGT
Statistics
Matches: 272, Mismatches: 59, Indels: 24
0.77 0.17 0.07
Matches are distributed among these distances:
157 60 0.22
158 159 0.58
159 51 0.19
160 2 0.01
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCATGTCTAAGACCCCACCGGACCGAAGGTTGTGGCAGCAAGATCGACA
GCACGCAGGGGGGACCGAGCCAATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTAAGCACC
CTCACATTCGTTTCATGGGTTGGCTTAG
Found at i:23136418 original size:159 final size:159
Alignment explanation
Indices: 23136036--23136612 Score: 508
Period size: 158 Copynumber: 3.6 Consensus size: 159
23136026 ACCACCCGTT
* * * * ** *
23136036 CGATCCCCGACTTGCGCATCCTGCCTCTCTGGTCGGCTGAGC-ATTCACACGCTCGTTTCATGGG
1 CGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCT-GCACGCTCGTTTCATGGG
* * * * * * * *
23136100 TTGACTTAGGCATATGAAGTTTATTCCCA-GTCTAAG-ATCAGACTGGACTGAGGGTTGC-GACA
65 TTGGCTTAGGCATAAGGAGTTCATT-CCATGTCTAAGCACCAGGCTGAACCGAGGGTTGCAG-CA
* * * * * *
23136162 GCAGGATCGGTAGCACGTA-AGGGGGACCGGGT
128 GCAGGATCGATAGCACCTAGA-AGAGACCGCGC
* * ** * *
23136194 CGATCCC-AAGCTTGCGTATTCTGCCTCTCCGACCGACTGAGCACCTGCACGCCCGTTTCATGGG
1 CGATCCCTGA-CTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCTGCACGCTCGTTTCATGGG
* * * **
23136258 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GAACCGAGGGTTGTGGCAGC
65 TTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACCAGGCTGAACCGAGGGTTGCAGCAGC
*
23136322 GGGATCGATAGCACAC-AGAAGAGGACCGCGC
130 AGGATCGATAGCAC-CTAGAAGA-GACCGCGC
* * * **
23136353 CGATCCCTGACTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCTGCACGCTCGTTTTGTGGGT
1 CGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCTGCACGCTCGTTTCATGGGT
* * * * *
23136418 TGACTTAGGCATAAGGAGTTCATTCCCA-GTCTAAG-ATCGGGCTGGACTGAGGGTTGCAGCAGC
66 TGGCTTAGGCATAAGGAGTTCATT-CCATGTCTAAGCACCAGGCTGAACCGAGGGTTGCAGCAGC
** * * *
23136481 AGGATCGATAGCACCTAGGCGAGATCGGGT
130 AGGATCGATAGCACCTAGAAGAGACCGCGC
* * * * * *
23136511 CGATCCTTGGCTTGTGCATTCTGCCTCTCCAGTCGATTGAGCGCCCGCACGCTCGTTTCATGGGT
1 CGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCTGCACGCTCGTTTCATGGGT
* *
23136576 TGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCA
66 TGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCA
23136613 TACGAAGTTC
Statistics
Matches: 336, Mismatches: 69, Indels: 27
0.78 0.16 0.06
Matches are distributed among these distances:
157 7 0.02
158 197 0.59
159 128 0.38
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
CGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCTGCACGCTCGTTTCATGGGT
TGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACCAGGCTGAACCGAGGGTTGCAGCAGCA
GGATCGATAGCACCTAGAAGAGACCGCGC
Found at i:23136610 original size:158 final size:155
Alignment explanation
Indices: 23136083--23136601 Score: 549
Period size: 158 Copynumber: 3.3 Consensus size: 155
23136073 TGAGCATTCA
* * * *
23136083 CACGCTCGTTTCATGGGTTGACTTAGGCATATGAAGTTTATTCCCAGTCTAAGATCAGACTGGAC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATCAGGCTGGAC
* * * ** *
23136148 TGAGGGTTGCGACAGCAGGATCGGTAGCACGTAAGGGGGACCGGGTCGATCCCAAGCTTGCGTAT
66 TGAGGGTTGCG-CAGCAGGATCGATAGCACCT-AGGGAGACCGGGTCGATCCCTGGCTTGCGCAT
* *
23136213 TCTGCCTCTCCGACCGACTGAGCACCTG
129 TCTGCCTCTCCG-TCGACTGAGCGCCTG
* * * ** * *
23136241 CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTC-GA
1 CACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCCA-GTCTAAG-ATCAGGCTGG
* * * * * * *
23136304 ACCGAGGGTTGTGGCAGCGGGATCGATAGCACAC-AGAAGAGGACCGCGCCGATCCCTGACTTGC
64 ACTGAGGGTTG-CGCAGCAGGATCGATAGCAC-CTAG-GGA-GACCGGGTCGATCCCTGGCTTGC
* * *
23136368 GCATTATGCCTCTCCGGTCGGCTCAGCGCCTG
125 GCATTCTGCCTCTCC-GTCGACTGAGCGCCTG
** *
23136400 CACGCTCGTTTTGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATCGGGCTGGAC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATCAGGCTGGAC
* * *
23136465 TGAGGGTTGCAGCAGCAGGATCGATAGCACCTAGGCGAGATCGGGTCGATCCTTGGCTTGTGCAT
66 TGAGGGTTGC-GCAGCAGGATCGATAGCACCTAGG-GAGACCGGGTCGATCCCTGGCTTGCGCAT
* *
23136530 TCTGCCTCTCCAGTCGATTGAGCGCCCG
129 TCTGCCTCTCC-GTCGACTGAGCGCCTG
* *
23136558 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCC
23136602 ATATCTAAGC
Statistics
Matches: 292, Mismatches: 57, Indels: 24
0.78 0.15 0.06
Matches are distributed among these distances:
157 5 0.02
158 159 0.54
159 124 0.42
160 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (155 bp):
CACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATCAGGCTGGAC
TGAGGGTTGCGCAGCAGGATCGATAGCACCTAGGGAGACCGGGTCGATCCCTGGCTTGCGCATTC
TGCCTCTCCGTCGACTGAGCGCCTG
Found at i:23136611 original size:317 final size:317
Alignment explanation
Indices: 23136036--23136611 Score: 809
Period size: 317 Copynumber: 1.8 Consensus size: 317
23136026 ACCACCCGTT
* * * *
23136036 CGATCCCCGACTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCATTCACACGCTCGTTTCATGGGT
1 CGATCCCCGACTTGCGCATCATGCCTCTCCGGTCGGCTCAGCACTCACACGCTCGTTTCATGGGT
* *
23136101 TGACTTAGGCATATGAAGTTTATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGACAGCAG
66 TGACTTAGGCATAAGAAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGACAGCAG
* * * *
23136166 GATCGGTAGCACGTAAGGGGGACCGGGTCGATCCCAAGCTTGCGTATTCTGCCTCTCCGACCGAC
131 GATCGATAGCACCTAAGGGAGACCGGGTCGATCCCAAGCTTGCGCATTCTGCCTCTCCGACCGAC
* * *
23136231 TGAGCACCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
196 TGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCC
23136296 CCAGTCGAACCGAGGGTTGTGGCAGCGGGATCGATAGCACACAGAAGAGGACCGCGC
261 CCAGTCGAACCGAGGGTTGTGGCAGCGGGATCGATAGCACACAGAAGAGGACCGCGC
* * * * **
23136353 CGATCCCTGACTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGC-CTGCACGCTCGTTTTGTGGG
1 CGATCCCCGACTTGCGCATCATGCCTCTCCGGTCGGCTCAGCACTC-ACACGCTCGTTTCATGGG
* * *
23136417 TTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATCGGGCTGGACTGAGGGTTGC-AGCAGC
65 TTGACTTAGGCATAAGAAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGA-CAGC
* *** * *
23136481 AGGATCGATAGCACCT-AGGCGAGATCGGGTCGATCCTTGGCTTGTGCATTCTGCCTCTCC-AGT
129 AGGATCGATAGCACCTAAGG-GAGACCGGGTCGATCCCAAGCTTGCGCATTCTGCCTCTCCGA-C
* * *
23136544 CGATTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTA
192 CGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTA
23136609 AGC
257 AGC
23136612 ATACGAAGTT
Statistics
Matches: 224, Mismatches: 31, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
316 6 0.03
317 218 0.97
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (317 bp):
CGATCCCCGACTTGCGCATCATGCCTCTCCGGTCGGCTCAGCACTCACACGCTCGTTTCATGGGT
TGACTTAGGCATAAGAAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGACAGCAG
GATCGATAGCACCTAAGGGAGACCGGGTCGATCCCAAGCTTGCGCATTCTGCCTCTCCGACCGAC
TGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCC
CCAGTCGAACCGAGGGTTGTGGCAGCGGGATCGATAGCACACAGAAGAGGACCGCGC
Found at i:23136746 original size:184 final size:184
Alignment explanation
Indices: 23136519--23136978 Score: 593
Period size: 184 Copynumber: 2.5 Consensus size: 184
23136509 GTCGATCCTT
* * *
23136519 GGCTTGTGCATTCTGCCTCTCCAGTCGATTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
1 GGCTTGTGCATTCTGCCTCTCCAGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
23136584 GCATACGGAGTTCATTCCATATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAT
66 GCATACGGAGTTCATTCCATATCTAAGCATACGAAGTTCATTCCCAGTCTAACATCAGACCAGAC
* *
23136649 CAAGGGTTGCGGTAGCAAGATCGA-CAGCACGCAGGGGGGACTGAGCCGATCCCC
131 CAAGGGTTGCGGTAGCAAGAT-GAGCAGCACGCAGGGAGGACCGAGCCGATCCCC
* * ** *
23136703 GGCTTATGCATTCTGCCTCTCCGGTCGACTGAGCGTTCGCACGCTCGTTTTGTGGGTTGACTTAG
1 GGCTTGTGCATTCTGCCTCTCCAGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
23136768 GCATACGGAGTTCATCCCCA-GTCTAAGCATACGAAGTTCATTCCCAGTCTAACATCAGACTAGA
66 GCATACGGAGTTCAT-TCCATATCTAAGCATACGAAGTTCATTCCCAGTCTAACATCAGACCAGA
* * * * * * *
23136832 CCGAGGGTTGCGGTAGCAAGATTAGCAGCATGCAGTGAGGACCGGGTCGATCCCT
130 CCAAGGGTTGCGGTAGCAAGATGAGCAGCACGCAGGGAGGACCGAGCCGATCCCC
* * * * * * * *
23136887 GGCTTGCGCATTATGCCTCTCCAATCGGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAG
1 GGCTTGTGCATTCTGCCTCTCCAGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
23136952 GCATACGGAGTTCATTCC-TAGTCTAAG
66 GCATACGGAGTTCATTCCATA-TCTAAG
23136979 ATCAGACCAG
Statistics
Matches: 234, Mismatches: 38, Indels: 8
0.84 0.14 0.03
Matches are distributed among these distances:
183 3 0.01
184 228 0.97
185 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (184 bp):
GGCTTGTGCATTCTGCCTCTCCAGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
GCATACGGAGTTCATTCCATATCTAAGCATACGAAGTTCATTCCCAGTCTAACATCAGACCAGAC
CAAGGGTTGCGGTAGCAAGATGAGCAGCACGCAGGGAGGACCGAGCCGATCCCC
Found at i:23136805 original size:26 final size:26
Alignment explanation
Indices: 23136768--23136819 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23136758 GTTGACTTAG
*
23136768 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
23136794 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
23136820 CATCAGACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:23137138 original size:26 final size:26
Alignment explanation
Indices: 23137109--23137161 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23137099 GTTGGCTTAG
23137109 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
*
23137135 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
23137161 G
1 G
23137162 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATGTCTAA
Found at i:23137334 original size:26 final size:26
Alignment explanation
Indices: 23137304--23137358 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
23137294 GTTGACCTAG
* *
23137304 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
23137330 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
23137356 GCA
1 GCA
23137359 GCACGCAGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:23137628 original size:26 final size:26
Alignment explanation
Indices: 23137592--23137644 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23137582 TTTGGCTTAG
*
23137592 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
23137618 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
23137644 G
1 G
23137645 ATTTTTTGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:23138396 original size:158 final size:158
Alignment explanation
Indices: 23138004--23138486 Score: 455
Period size: 158 Copynumber: 3.1 Consensus size: 158
23137994 AAGCAAACGA
* ** * * *
23138004 AGTTCATTCCCAGTCTAAGATCAGACTAGATCGAGAGTTACGACAGCAGGATCGACA-CACGCAG
1 AGTTCATTCCCAGTGTAAGATCAGACCGGATCGAGGGTTTCGATAGCAGGATCGACAGCACGCAG
* * * * * * * *
23138068 GGGGGACCGGGCCGATCTCCTGCTTGCGCATTCTGCCTTTCC-AGCTGGCTGAGCGCCCGCACGC
66 GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CAGGCTTAGTGCCCGCACGC
*
23138132 TCATTTCGTGGGTTGGCTTAGGCATAGGG
130 TCATTTCGTGGGTTGGCTTAGGCATACGG
** * * * * *
23138161 AGTTCATT-CCA-TGTCCAAGCCCCAG-TCGGA-CTGACGGTTGT-GGTAAC-GGACCGACAGCA
1 AGTTCATTCCCAGTGT--AAG-ATCAGACCGGATC-GAGGGTT-TCGATAGCAGGATCGACAGCA
* * *
23138220 CGCAGAGGGGAATCGGGTCGATCCCCGGCTGGCGCATTATGCCTCTCCGACAGGCTTAGTGCCCG
61 CGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACAGGCTTAGTGCCCG
** *
23138285 CACGCTTGTTTCGTGGGTTGACTTAGGCATACGG
125 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
* **
23138319 AGTTCATTCCCAGTGTAAGATCAGACCGGATCGAGGGTTTCGATAGCAGGATCGATAGCACATAG
1 AGTTCATTCCCAGTGTAAGATCAGACCGGATCGAGGGTTTCGATAGCAGGATCGACAGCACGCAG
* * * * *
23138384 GGGGGATTGGGTC-AGTCCCTGGCTTGTGCATTCTGCCTCTCCGACCGG-TTGAGTGCCTGCACG
66 GGGGGATCGGGTCGA-TCCCCGGCTTGCGCATTCTGCCTCTCCGACAGGCTT-AGTGCCCGCACG
* * **
23138447 CTCATTTCATGGGTTGGCTTAGGTATATAG
129 CTCATTTCGTGGGTTGGCTTAGGCATACGG
23138477 AGTTCATTCC
1 AGTTCATTCC
23138487 ATGTCTAAGC
Statistics
Matches: 257, Mismatches: 53, Indels: 31
0.75 0.16 0.09
Matches are distributed among these distances:
155 2 0.01
156 12 0.05
157 35 0.14
158 187 0.73
159 18 0.07
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
AGTTCATTCCCAGTGTAAGATCAGACCGGATCGAGGGTTTCGATAGCAGGATCGACAGCACGCAG
GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACAGGCTTAGTGCCCGCACGCT
CATTTCGTGGGTTGGCTTAGGCATACGG
Found at i:23139390 original size:26 final size:26
Alignment explanation
Indices: 23139354--23139406 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23139344 GTTGATTTAG
*
23139354 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATATAAAGTTCATCCCCAGTCTAA
*
23139380 GCATATAAAGTTCATTCCCAGTCTAA
1 GCATATAAAGTTCATCCCCAGTCTAA
23139406 G
1 G
23139407 ATCTTACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATATAAAGTTCATCCCCAGTCTAA
Found at i:23140468 original size:158 final size:155
Alignment explanation
Indices: 23140179--23140986 Score: 536
Period size: 158 Copynumber: 5.0 Consensus size: 155
23140169 GGTCGATTGA
* * * * *
23140179 ATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGAGGGGGACCGAGTCGATCCCTGGC
1 ATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGA-GGGGATCGGGTCGATCTC-GAC
* * * * ** * * * * *
23140244 TTGCGCATTATGCCTCTCCGACCAGCTCAACGCTCGTACGCTCGTTTCGTGGGTTAACTTAAGCA
64 TTGCGCATTCTGCCTCTTCG-TCGGC-CAGTGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCA
* *
23140309 TACGAAGTTCATTCCCAGTCTAAGATCGG
127 TACGGAGTTCATTCCCAGTCTAAGATCAG
* * * *
23140338 ATCGGACTGAGGGTTGTGACAGCAGGATTGACAGCACGCAGAGGGGATCGGGTCAATCTTCGACT
1 ATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGATCGGGTCGATC-TCGACT
* * * *
23140403 TGTGCATTCTGCCTCTCCGGTCGGCCGAGTGCCCGCATGCCCGTTTCGTGGGTTGACTTAGGCAT
65 TGCGCATTCTGCCTCTTC-GTCGGCC-AGTGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCAT
* **
23140468 AGGGAGTTCATT-CCATGTCTAAGCCCCAG
128 ACGGAGTTCATTCCCA-GTCTAAG-ATCAG
* ** * * * * *
23140497 -TCGAATTGAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGAGGGA-CTGGGTCGATCCTCGG
1 ATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAG-GGGATC-GGGTCGAT-CTCGA
* * * * * * **
23140560 CTTACGCATTATGCCTCTTCGACTAGCTCAGTGCCCGTACA-CTCGTTTTGTAAGTTGACTTAGG
63 CTTGCGCATTCTGCCTCTTCGTC-GGC-CAGTGCCCGCA-AGCTCGTTTCGTGGGTTGACTTAGG
* *
23140624 TATACGGAGTTCATTCCCAGTGTAAGATCAG
125 CATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * * * *
23140655 ACCAGACCGAGGGTTGCGGTAGTAGGATCGATAGCACGCAGGGGGTGATCGGG-CGGTCCCGGAC
1 ATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGG-GATCGGGTCGATCTC-GAC
* * **
23140719 TTGCGCATTCTGCCTCTTCAGTAGGCTAAGCACCCGCAAGCTCGTTTCGTGGGTTG-CTTAGGCA
64 TTGCGCATTCTGCCTCTTC-GTCGGC-CAGTGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCA
*
23140783 TACGGAGTTCATTCCCAGCCTAAGATCAG
127 TACGGAGTTCATTCCCAGTCTAAGATCAG
* *
23140812 ATCGGACCGAGGGTTACGGCAGTAGGACCAGCAGTAGGATCGACAGCACACAGGGTGGGATCGGG
1 ATCGGACCGAGGGTT------GT-GG--CAGC---AGGATCGACAGCACGCAGAG-GGGATCGGG
* * * * * * *
23140877 TTGATCCCCGACTTACGCATTCTACCT-ATC-T-GGCCAGCTGAGCGCTTGCACGCTCGTTTCGT
53 TCGAT-CTCGACTTGCGCATTCTGCCTCTTCGTCGGCCAG-T--GC-C-CGCAAGCTCGTTTCGT
* * *
23140939 GGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACAG
112 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CAG
23140985 AT
1 AT
23140987 TTCATTCCCA
Statistics
Matches: 502, Mismatches: 106, Indels: 68
0.74 0.16 0.10
Matches are distributed among these distances:
157 54 0.11
158 169 0.34
159 155 0.31
160 6 0.01
163 1 0.00
164 2 0.00
165 2 0.00
166 5 0.01
167 1 0.00
168 1 0.00
169 28 0.06
170 40 0.08
171 31 0.06
172 2 0.00
173 5 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (155 bp):
ATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGATCGGGTCGATCTCGACTT
GCGCATTCTGCCTCTTCGTCGGCCAGTGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAG
Found at i:23140767 original size:317 final size:316
Alignment explanation
Indices: 23140187--23140797 Score: 733
Period size: 317 Copynumber: 1.9 Consensus size: 316
23140177 GAATCGGACC
* * * *
23140187 GAGGGTTGTGGCAGCAGGATCGACAGCATGCAGAGGGGGACCGAGTCGATCCCTGGCTTGCGCAT
1 GAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGAGGGACCGAGTCGATCCCTGGCTTACGCAT
* * **
23140252 TATGCCTCTCCGACCAGCTCAACGCTCGTACGCTCGTTTCGTGGGTTAACTTAAGCATACGAAGT
66 TATGCCTCTCCGACCAGCTCAACGCCCGTACACTCGTTTCGTAAGTTAACTTAAGCATACGAAGT
* * * * * *
23140317 TCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGTGACAGCAGGATTGACAGCACGCAGAGG
131 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGG
* * * * * ** *
23140382 GGATCGGGTCAATCTTCGACTTGTGCATTCTGCCTCTCCGGTCGGCCGAGTGCCCGCATGCCCGT
196 GGATCGGGTCAATCTCCGACTTGCGCATTCTGCCTCTCCAGTAGGCCAAGCACCCGCAAGCCCGT
*
23140447 TTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAATT
261 TTCGTGGGTTG-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGAATT
* * * * *
23140504 GAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGAGGGACTGGGTCGAT-CCTCGGCTTACGCA
1 GAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGAGGGACCGAGTCGATCCCT-GGCTTACGCA
* * ** * * * * *
23140568 TTATGCCTCTTCGACTAGCTCAGTGCCCGTACACTCGTTTTGTAAGTTGACTTAGGTATACGGAG
65 TTATGCCTCTCCGACCAGCTCAACGCCCGTACACTCGTTTCGTAAGTTAACTTAAGCATACGAAG
* ** * * *
23140633 TTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATCGATAGCACGCAGGG
130 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAG
** * * *
23140698 GGTGATCGGG-CGGTC-CCGGACTTGCGCATTCTGCCTCTTCAGTAGGCTAAGCACCCGCAAGCT
195 GG-GATCGGGTCAATCTCC-GACTTGCGCATTCTGCCTCTCCAGTAGGCCAAGCACCCGCAAGCC
23140761 CGTTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCC
258 CGTTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCC
23140798 CAGCCTAAGA
Statistics
Matches: 243, Mismatches: 48, Indels: 7
0.82 0.16 0.02
Matches are distributed among these distances:
316 26 0.11
317 210 0.86
318 7 0.03
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (316 bp):
GAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGAGGGACCGAGTCGATCCCTGGCTTACGCAT
TATGCCTCTCCGACCAGCTCAACGCCCGTACACTCGTTTCGTAAGTTAACTTAAGCATACGAAGT
TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGG
GGATCGGGTCAATCTCCGACTTGCGCATTCTGCCTCTCCAGTAGGCCAAGCACCCGCAAGCCCGT
TTCGTGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGAATT
Found at i:23140990 original size:26 final size:26
Alignment explanation
Indices: 23140951--23141010 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
23140941 GTTGACTTAG
*
23140951 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGATTTCATCCCCAATCTAA
* *
23140977 GCATACAGATTTCATTCCCAGTCTAA
1 GCATACAGATTTCATCCCCAATCTAA
23141003 G-AT-CAGAT
1 GCATACAGAT
23141011 CAGACCGAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 24 0.77
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (26 bp):
GCATACAGATTTCATCCCCAATCTAA
Found at i:23141266 original size:159 final size:159
Alignment explanation
Indices: 23141013--23141322 Score: 442
Period size: 159 Copynumber: 1.9 Consensus size: 159
23141003 GATCAGATCA
* * * * * * **
23141013 GACCGAGGGTTACGACAGTAGGATCAGTAGCACATAGGGGGGGACTGGGTCGGTCCCTGACTTGC
1 GACCAAGGGTTACGACAGTAGGATCAGCAGCACACAGAGGGGGACTGGGCCGATCCCCAACTTGC
*
23141078 GCATTTTACCTCTCCGGCCAGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGG
66 GCATTCTACCTCTCCGGCCAGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGG
23141143 GAGTTCATTCCATGTATAAGCCCCAGTCG
131 GAGTTCATTCCATGTATAAGCCCCAGTCG
* * * *
23141172 GACCAAGGGTTATGCCAGTGGGATCGGCAGCACACAGAGGGGGACTGGGCCGATCCCCAACTTGC
1 GACCAAGGGTTACGACAGTAGGATCAGCAGCACACAGAGGGGGACTGGGCCGATCCCCAACTTGC
* * * *
23141237 GCATTCTGCCTCTCCGGTC-GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAT
66 GCATTCTACCTCTCCGGCCAG-CTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
*
23141301 GGAGTTCATTCCATGTCTAAGC
130 GGAGTTCATTCCATGTATAAGC
23141323 TTAGGGAGTT
Statistics
Matches: 132, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
158 1 0.01
159 131 0.99
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
GACCAAGGGTTACGACAGTAGGATCAGCAGCACACAGAGGGGGACTGGGCCGATCCCCAACTTGC
GCATTCTACCTCTCCGGCCAGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGG
GAGTTCATTCCATGTATAAGCCCCAGTCG
Found at i:23142814 original size:196 final size:197
Alignment explanation
Indices: 23142458--23142891 Score: 556
Period size: 196 Copynumber: 2.2 Consensus size: 197
23142448 GTTTGATTCG
* *
23142458 TGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAA
1 TGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGCCTAA
* * * *
23142523 GATCAGATCGGATCGAGGGTTGCGGTAGTAGTACCAGCAGTAAGATCGGCAGCACGCAAGAGGGG
66 GATCAGATCAGATCGAGGGTTGCAGTAGCAGGACCAGCAGTAAGATCGGCAGCACGCAAGAGGGG
* * * * *
23142588 ATCGGGCCAATCCTTGGCTTACGCATTCTGCGTCTCT-GTCAGACTGAGTGCCCGCACGCTCGTT
131 ATCGAGCCAATCCCTGGCTTACGCATTCTGCCTCTCTGGTC-GACTGAGCGCCCGCACACTCGTT
23142652 TCA
195 TCA
* *
23142655 TGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATATGGAGTTCATT-CCAGCCTAA
1 TGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGCCTAA
* * *
23142719 GATCAGATCAGA-CTGAGGGTTGCAGTAGCAGGACCAGC-G-ACAGGATTGGCAGCACGTAAGGG
66 GATCAGATCAGATC-GAGGGTTGCAGTAGCAGGACCAGCAGTA-A-GATCGGCAGCACGCAAGAG
** ** * * *
23142781 GGGA-CTGAGCCAATCCCTGGCTTGTGCATTCTGCCTCTCTGGTCGGTTGAGCGCTCGCACATTT
128 GGGATC-GAGCCAATCCCTGGCTTACGCATTCTGCCTCTCTGGTCGACTGAGCGCCCGCACACTC
23142845 GTTTCA
192 GTTTCA
* *
23142851 TGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGC
1 TGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
23142892 CCCAGTCGAA
Statistics
Matches: 206, Mismatches: 26, Indels: 11
0.85 0.11 0.05
Matches are distributed among these distances:
194 1 0.00
195 4 0.02
196 146 0.71
197 55 0.27
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (197 bp):
TGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGCCTAA
GATCAGATCAGATCGAGGGTTGCAGTAGCAGGACCAGCAGTAAGATCGGCAGCACGCAAGAGGGG
ATCGAGCCAATCCCTGGCTTACGCATTCTGCCTCTCTGGTCGACTGAGCGCCCGCACACTCGTTT
CA
Found at i:23143084 original size:26 final size:26
Alignment explanation
Indices: 23143048--23143100 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23143038 GTTGACTTAG
*
23143048 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23143074 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23143100 G
1 G
23143101 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23143382 original size:159 final size:160
Alignment explanation
Indices: 23143212--23143578 Score: 379
Period size: 159 Copynumber: 2.3 Consensus size: 160
23143202 CCCGCACGAC
* * * *
23143212 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCGAACTGAGG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGACCGAACCGAGG
* * *
23143276 GTTGTGGTAGCGA-GACCGGCAGCATGCAGAGGGGGA-TCGGGTCGATCCAC-GACTTGCGCATT
66 GTTGTGGTAG-GAGGACCGGCAGCACGCAGAGGGGGACT-GGGACGATCCCCAG-CTTGCGCATT
* * *
23143338 ATGCCTCTCCGG-TAGGCTTAGCGCCCGAACGCT
128 ATGCCTCTCCGGCCA-GCTGAGCGCCCGAACACT
* * * ** * *
23143371 CGTTTCATGGGTTGACTAAGGTATACTAAGTTCATTCCCA-GTCTAAG-ATTAGACTGAACCGAG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACTAGACCGAACCGAG
* ** * * * * *
23143434 GGTTGTGGTAGTAGGATGGGCAGCACGCAGTGGGGGACTGGGACGGTCCCCAGCTTGTGGATTCT
65 GGTTGTGGTAGGAGGACCGGCAGCACGCAGAGGGGGACTGGGACGATCCCCAGCTTGCGCATTAT
* *
23143499 GCCTCTCTGGCCAGCTGAGCGCCCGTACACT
130 GCCTCTCCGGCCAGCTGAGCGCCCGAACACT
* *
23143530 CGTTTCATTGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCA
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
23143579 TTCAGAGTTC
Statistics
Matches: 166, Mismatches: 34, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
158 7 0.04
159 152 0.92
160 7 0.04
ACGTcount: A:0.20, C:0.24, G:0.31, T:0.26
Consensus pattern (160 bp):
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGACCGAACCGAGG
GTTGTGGTAGGAGGACCGGCAGCACGCAGAGGGGGACTGGGACGATCCCCAGCTTGCGCATTATG
CCTCTCCGGCCAGCTGAGCGCCCGAACACT
Found at i:23143933 original size:26 final size:26
Alignment explanation
Indices: 23143904--23143956 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23143894 GTTGGCTTAG
23143904 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23143930 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23143956 G
1 G
23143957 ATTAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23144042 original size:354 final size:354
Alignment explanation
Indices: 23143295--23144116 Score: 859
Period size: 354 Copynumber: 2.3 Consensus size: 354
23143285 GCGAGACCGG
* * * * * *
23143295 CAGCATGCAGAGGGGGATCGGGTCGATCCACGACTTGCGCATTATGCCTCTCCGGTAGGCTTAGC
1 CAGCACGCA-AGGGGGACCGAGCCGATCCACGACTTGCGCATTATGCCTCTCCGATCGG-TTAGC
* * * ** *
23143360 GCCCGAACGCTCGTTTCATGGGTTGACTAAGGTATACTAAGTTCATTCCCAGTCTAAGATTAGAC
64 GCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * ** *
23143425 TGAACCGAGGGTTGTGGTAGTAGGATGGGCAGCACGCAGTGGGGGACTGGGACGGTCCCCAGCTT
129 TGAACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGAGGGGGACCAGGACGATCCCCAGCTT
* * * * * * *
23143490 GTGGATTCTGCCTCTCTGGCCAGCTGAGCGCCCGTACACTCGTTTCATTGGTTGGCTTAAGCATA
194 GTGCATTCTACCTCTCCGACCAGCTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAAGCATA
* * * * * *
23143555 CGGAGTTCATTCCATGTCTAAGCATTCAGAGTTCATTCCCAGTTTATGATTGGATCGGACTGATG
259 CGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGG
* * * *
23143620 GTTGTGGTAGCAGAACCAGCAGCAGGATCGG
324 GTTGCGATAGCAGAACCAACAGCAGGATCGA
* * * * * * * * * *
23143651 TAGCACGTAGGGGGGATCGAGCTGATCCTCAACTTGCGCATTATGCCTCTCCAACCGGTTCAGCA
1 CAGCACGCAAGGGGGACCGAGCCGATCCACGACTTGCGCATTATGCCTCTCCGATCGGTT-AGCG
** * *
23143716 CCCGTGCGCTCGTTTCGTGGGTTGATTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-T
65 CCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
** * *
23143780 CGAATGGAGGGTTGTGGTCA-CAGGATCGACAGCACGCA-AGGGGGACCAGGTCGATCCTC-GAC
130 -GAACCGAGGGTTGTGGT-AGCAGGATCGACAGCACGCAGAGGGGGACCAGGACGATCCCCAG-C
* * ** * *
23143842 TTGTGCATTCTACCTCTCCGACC-GACTGAGCGTCTGCATGCTCATTTCGTGGGTTGGCTTAGGC
192 TTGTGCATTCTACCTCTCCGACCAG-CTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAAGC
* *
23143906 ATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGATTG
256 ATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGGACTG
* *
23143971 AGGGTTGCGATAGTAGGACCAACAGCAGGATCGA
321 AGGGTTGCGATAGCAGAACCAACAGCAGGATCGA
* * * *
23144005 CAGTACGCAAGGGGGACC-AGGCCGATCCCCGACTTGCGCATTCTGCCT-TGCCGATCGGCTGAG
1 CAGCACGCAAGGGGGACCGA-GCCGATCCACGACTTGCGCATTATGCCTCT-CCGATCGG-TTAG
* *
23144068 CGCCC-ACACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTC
63 CGCCCGA-ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
23144117 TATGTCTAAG
Statistics
Matches: 377, Mismatches: 80, Indels: 20
0.79 0.17 0.04
Matches are distributed among these distances:
353 4 0.01
354 240 0.64
355 126 0.33
356 7 0.02
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (354 bp):
CAGCACGCAAGGGGGACCGAGCCGATCCACGACTTGCGCATTATGCCTCTCCGATCGGTTAGCGC
CCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTG
AACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGAGGGGGACCAGGACGATCCCCAGCTTGT
GCATTCTACCTCTCCGACCAGCTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAAGCATACG
GAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGGGT
TGCGATAGCAGAACCAACAGCAGGATCGA
Found at i:23148350 original size:14 final size:14
Alignment explanation
Indices: 23148331--23148361 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
23148321 TCCGCTGGTG
23148331 CATGGCCTCCATGC
1 CATGGCCTCCATGC
23148345 CATGGCCTCCATGC
1 CATGGCCTCCATGC
23148359 CAT
1 CAT
23148362 CGCAAGGTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.16, C:0.42, G:0.19, T:0.23
Consensus pattern (14 bp):
CATGGCCTCCATGC
Found at i:23154162 original size:26 final size:26
Alignment explanation
Indices: 23154126--23154178 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23154116 GTTGACTTAG
*
23154126 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
23154152 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
23154178 G
1 G
23154179 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:23154637 original size:157 final size:158
Alignment explanation
Indices: 23154152--23154673 Score: 509
Period size: 159 Copynumber: 3.3 Consensus size: 158
23154142 CCCAGTCTAA
* * * *
23154152 GCATACGAAGTTCATTCCCAATCTAAGATTGGACCAGACCT-AGGGTTGCGACAACAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCTAAGGGTTGC-ACAGCAGGATCGAC
* * * * * * * *
23154216 AGCACG-TAGGGGGAAACGGGCCAACCCTCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCA
65 AGCACGCAAGGGGG-AACGGGTCAACCCCCAGCTTGCGCATTATGCCTCTTCGGTCGGCTGAGCG
* *
23154280 TCCGCACGCCCATTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * * * * * ** *
23154310 GCATAGGGAGTTCATTCCTTGTCTAAGCCTC-AATCAGATC-GAGGGTTGTGGCAGCGGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCAGACCTAAGGGTTG-CACAGCAGGATCGA
* * * *** * * *
23154373 CAACACGCAGAGGGGGACCGAGTCGTTCCCCAGCTTGCGCATTATGCCTCTTCGGCCAGCTCAGC
64 CAGCACGCA-AGGGGGAACGGGTCAACCCCCAGCTTGCGCATTATGCCTCTTCGGTCGGCTGAGC
* ** *
23154438 GCCCGTACGCTCATTTCGTGGGTTAACTTAA
128 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * *
23154469 GCATACAGAGTTCATTCTCAGTCTAAGATCGGACCAGA-CTAAGGGTTGCATCAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCTAAGGGTTGCA-CAGCAGGATCGAC
** * *
23154533 AGCACGCAAGGGGGATTGGGTCAACCCCCAGCTTACGCATT-TACCTCTTCGGTCGGCTGAGCGC
65 AGCACGCAAGGGGGAACGGGTCAACCCCCAGCTTGCGCATTATGCCTCTTCGGTCGGCTGAGCGC
*
23154597 CCGCACGCTCTTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
23154626 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAGC-AAGGGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCTAAGGGTTG
23154674 TGGCAACAGG
Statistics
Matches: 285, Mismatches: 70, Indels: 19
0.76 0.19 0.05
Matches are distributed among these distances:
157 86 0.30
158 81 0.28
159 112 0.39
160 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCTAAGGGTTGCACAGCAGGATCGACA
GCACGCAAGGGGGAACGGGTCAACCCCCAGCTTGCGCATTATGCCTCTTCGGTCGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:23154843 original size:170 final size:170
Alignment explanation
Indices: 23154564--23154924 Score: 428
Period size: 170 Copynumber: 2.1 Consensus size: 170
23154554 CAACCCCCAG
* * * *
23154564 CTTACGCATTTACCTCTTCGGTCGGCTGAGCGCCCGCACGCTCTTTTCGTGGGTTGGCTTAGGCA
1 CTTACGCATTTGCCTCTCCGGTCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCA
* * * * * *
23154629 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAGCAAGGGTTGTGGCAACAGGACCAGCAGCA
66 TACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGGTTGAGACAACAAGACCAGCAGC-
*
23154694 G-GATCGGTAGCATGCAG-GGGGGACCAGGCTGATCCTCGA
130 GTGATCGATAGCATGCAGAGGGGGACCAGGCTGATCCTCGA
*
23154733 CTTACGCATTCTGCCTCTCCGG-CTGGCTGAGCGCCCGCACACTCATTTCGTTGGTTGGCTTAGG
1 CTTACGCATT-TGCCTCTCCGGTC-GGCTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGG
* * * * * *
23154797 CATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGAGACAGCAAGATCGGT
64 CATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCGGACCAAGGGTTGAGACAACAAGACCAGC
** *
23154860 AGCGTGATCGATAGCATGCAGAGGGGGACTGGGCTGATCCTCGG
127 AGCGTGATCGATAGCATGCAGAGGGGGACCAGGCTGATCCTCGA
23154904 CTT-CTGCATTATGCCTCTCCG
1 CTTAC-GCATT-TGCCTCTCCG
23154925 ATCGACCTCT
Statistics
Matches: 163, Mismatches: 22, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
169 15 0.09
170 109 0.67
171 39 0.24
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (170 bp):
CTTACGCATTTGCCTCTCCGGTCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGGTTGAGACAACAAGACCAGCAGCG
TGATCGATAGCATGCAGAGGGGGACCAGGCTGATCCTCGA
Found at i:23155011 original size:26 final size:26
Alignment explanation
Indices: 23154981--23155032 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23154971 TTGACTTAGA
23154981 CATACGAAGTTCATCCCCAATCTAAG
1 CATACGAAGTTCATCCCCAATCTAAG
* * *
23155007 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATCCCCAATCTAAG
23155033 ATCGGATTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAATCTAAG
Found at i:23155504 original size:159 final size:159
Alignment explanation
Indices: 23155151--23155968 Score: 534
Period size: 159 Copynumber: 5.2 Consensus size: 159
23155141 GCCTATTTTG
* * * * * * *
23155151 TGGGTTGGCTTAGGCATAAGGAGTTCATTACATGTCTAAGCTCCAGTCGA-ACTGAGGGTTGTGG
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGAT-CAGACCAGACCGAGGGTTGTGG
* * * * * * * * * * *
23155215 CAGCGGGATTGGAC-GCATGCA-TGGGGGATCGAGCCGATCCCTGGCTTGCACATTCTACCTCTT
65 CAGTGGGA-TCGACAGCACGTAGAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTC
* * * ** *
23155278 C-GATCGGATGAGCACCCACACACTC-TTTCA
129 CGGCT-GGCTCAGCACCCGTACGCTCGTTTCA
* * * * * *
23155308 TGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTGTAAGCTCCAG-CCGGACCGAGGGTTGTGG
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGAT-CAGACCAGACCGAGGGTTGTGG
* * * *
23155372 CAATGGGATCGACAGTATGTAGAGGGGGATCGGGCTGATCCCTGGCTTGCGTATTATGCCTCTCC
65 CAGTGGGATCGACAGCACGTAGAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCC
* * * * ** *
23155437 GGCTAGCTCAACACTCGCACAATCGTTTCG
130 GGCTGGCTCAGCACCCGTACGCTCGTTTCA
* * * * *
23155467 TGGGTTGACTTAGGCATACGGAGTTCATTCTCA-GTGTAAGATCGGATCAGACCGAGGGTTGCGA
1 TGGGTTGACTTAGGCATACGGAGTTCATTC-CATGTCTAAGATCAGACCAGACCGAGGGTTGTGG
* * * ** * * *
23155531 TAGTAGGATCGGACCA-CACGTAG-TGGGGATCGGGCTGATCCCCAGCTTGTGCATTTTGCCTTT
65 CAGTGGGATC-GA-CAGCACGTAGAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTATGCCTCT
* * ** * *
23155594 CCGGCCGGCTGAGTGCCCGTATGCTCGTTTCG
128 CCGGCTGGCTCAGCACCCGTACGCTCGTTTCA
* * ** * *
23155626 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGATTGTGT
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGTGG
* * ** * * * * *
23155690 CTGTGGGAT-GATAGCACACAGAGGGGGACCGGGCCGAT-CGTCGACTTGCGCATTATGCCTCTT
65 CAGTGGGATCGACAGCACGTAGAGGGGGATCGGGCTGATCCCT-GGCTTGCGCATTATGCCTCTC
*
23155753 CGG-TCGGCTCAGCACCCGTACGCTCATTTCA
129 CGGCT-GGCTCAGCACCCGTACGCTCGTTTCA
* * *
23155784 TGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACAGAGGGTTGTGG
1 TGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGTGG
** * * * * * * ** *
23155848 CAGCAGGATCGATAGCACGCAGTGGGGGACCGAGCTGAT-CCTCGACTTATGCATTCTGCCTCTC
65 CAGTGGGATCGACAGCACGTAGAGGGGGATCGGGCTGATCCCT-GGCTTGCGCATTATGCCTCTC
* * **
23155912 CAG-TCGGCTGAGCACCCGTACGCTCGTTTTG
129 CGGCT-GGCTCAGCACCCGTACGCTCGTTTCA
* * *
23155943 TTGGTTAACTTAGGCATACAGAGTTC
1 TGGGTTGACTTAGGCATACGGAGTTC
23155969 GTCTGCAGTC
Statistics
Matches: 519, Mismatches: 124, Indels: 34
0.77 0.18 0.05
Matches are distributed among these distances:
156 6 0.01
157 78 0.15
158 156 0.30
159 266 0.51
160 11 0.02
161 2 0.00
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (159 bp):
TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGC
AGTGGGATCGACAGCACGTAGAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCG
GCTGGCTCAGCACCCGTACGCTCGTTTCA
Found at i:23155858 original size:317 final size:318
Alignment explanation
Indices: 23155286--23155960 Score: 725
Period size: 317 Copynumber: 2.1 Consensus size: 318
23155276 TTCGATCGGA
** * * * * *
23155286 TGAGCACCCACACACTC-TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTGTAAGCT
1 TGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * * *** * *
23155350 CCAGCCGGACCGAGGGTTGTGGCAATGGGATCGACAGTATGTAGAGGGGGATCGGGCTGATCCCT
66 CCAGCCAGACCGAGGATTGTGGCAATGGGATCGACAGCACACAGAGGGGGACCGGGCCGATCCCT
* * * * *
23155415 GGCTTGCGTATTATGCCTCTCCGGCTAGCTCAACACTCGCACAATCGTTTCGTGGGTTGACTTAG
131 GACTTGCGCATTATGCCTCTCCGGCTAGCTCAACACCCGCACAATCATTTCATGGGTTGACTTAG
* * * * * * *
23155480 GCATACGGAGTTCATTCTCAGTGTAAGATCGGATCAGACCGAGGGTTGCGATAGTAGGATCGGAC
196 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGCGACAGCAGGATC-GA-
* * * * * * *
23155545 CA-CACGTAGT-GGGGATCGGGCTGATCCCC-AGCTTGTGCATTTTGCCTTTCCGGCCGGC
259 CAGCACGCAGTGGGGGACCGAGCTGATCCCCGA-CTTATGCATTCTGCCTCTCCAGCCGGC
** *
23155603 TGAGTGCCCGTATGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
1 TGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* ** * *
23155668 CCAGCCAGACCGAGGATTGTGTCTGTGGGAT-GATAGCACACAGAGGGGGACCGGGCCGAT-CGT
66 CCAGCCAGACCGAGGATTGTGGCAATGGGATCGACAGCACACAGAGGGGGACCGGGCCGATCCCT
* * * * **
23155731 CGACTTGCGCATTATGCCTCTTCGG-TCGGCTCAGCACCCGTACGCTCATTTCATGGGTTGACTT
131 -GACTTGCGCATTATGCCTCTCCGGCT-AGCTCAACACCCGCACAATCATTTCATGGGTTGACTT
* * * *
23155795 ATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGTGGCAGCAGGATCGA
194 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGCGACAGCAGGATCGA
* * *
23155860 TAGCACGCAGTGGGGGACCGAGCTGATCCTCGACTTATGCATTCTGCCTCTCCAGTCGGC
259 CAGCACGCAGTGGGGGACCGAGCTGATCCCCGACTTATGCATTCTGCCTCTCCAGCCGGC
* * **
23155920 TGAGCACCCGTACGCTCGTTTTGTTGGTTAACTTAGGCATA
1 TGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATA
23155961 CAGAGTTCGT
Statistics
Matches: 290, Mismatches: 62, Indels: 12
0.80 0.17 0.03
Matches are distributed among these distances:
315 1 0.00
316 12 0.04
317 207 0.71
318 70 0.24
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (318 bp):
TGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
CCAGCCAGACCGAGGATTGTGGCAATGGGATCGACAGCACACAGAGGGGGACCGGGCCGATCCCT
GACTTGCGCATTATGCCTCTCCGGCTAGCTCAACACCCGCACAATCATTTCATGGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGTGGGGGACCGAGCTGATCCCCGACTTATGCATTCTGCCTCTCCAGCCGGC
Found at i:23156507 original size:26 final size:26
Alignment explanation
Indices: 23156457--23156509 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23156447 GTTGGCTTAG
*
23156457 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
23156483 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
23156509 G
1 G
23156510 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:23156707 original size:12 final size:12
Alignment explanation
Indices: 23156690--23156722 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
23156680 GAGGGTTGTG
23156690 GCAGTAGGACAA
1 GCAGTAGGACAA
*
23156702 GCAGTAGGACCA
1 GCAGTAGGACAA
23156714 GCAGTAGGA
1 GCAGTAGGA
23156723 TCGATAGCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.36, C:0.18, G:0.36, T:0.09
Consensus pattern (12 bp):
GCAGTAGGACAA
Found at i:23156875 original size:26 final size:26
Alignment explanation
Indices: 23156823--23156875 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23156813 GTTGACTCAG
* *
23156823 GCATACGGAGTTCATCCCCATTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23156849 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23156875 G
1 G
23156876 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23157307 original size:157 final size:157
Alignment explanation
Indices: 23156849--23157347 Score: 481
Period size: 157 Copynumber: 3.2 Consensus size: 157
23156839 CCCATTTTAA
* * *
23156849 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAAGGTTGAAACAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCATGTCTAAGATCAGATCAGACCGAGGGTTGAGACAGCAGGATCGAT
* * * * * *
23156913 AGTACGAAGTGGGATCGGGCCGATCCCCGGCTTGCCCATTCTGCCTCTCTGACCCGCTGAGCGCC
66 AGCACGCAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CCGCTGAGCGCC
* *
23156978 CGTACGCCCGTTTCATGGGTT-AGCTTAG
130 CGCACGCCTGTTTCATGGGTTGA-CTTAG
* * ** * * * * ** *
23157006 GCATAAGGAGTTC-TTTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCTGTGGGATCGG
1 GCATACGGAGTTCATTCCCATGTCTAAG-ATCAGATCAGACCGAGGGTTGAGACAGCAGGATCGA
* * * * ** * * * *
23157069 CAGCATGCAGAGGGGGATCAGGTCAATCCCTAGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGC
65 TAGCACGC--AGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAC-CGCTGAGC
*
23157134 ACCCGCACG-CTCGTTTCATGGGTTGACTTAG
127 GCCCGCACGCCT-GTTTCATGGGTTGACTTAG
* * * ** * *
23157165 GTATACGGAGTTCGTTCCCA-GTCTAAGATCGGATCAGATTGAGGGTTGCGACAGCAAGATCGAT
1 GCATACGGAGTTCATTCCCATGTCTAAGATCAGATCAGACCGAGGGTTGAGACAGCAGGATCGAT
* *
23157229 AGCACGCAGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGTGCC
66 AGCACGCAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCG-CTGAGCGCC
*
23157294 CGCACGCCTGTTTCATGGGTTGGCTTAG
130 CGCACGCCTGTTTCATGGGTTGACTTAG
*
23157322 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCATGTCTAA
23157348 CCCCCAGTCG
Statistics
Matches: 264, Mismatches: 66, Indels: 24
0.75 0.19 0.07
Matches are distributed among these distances:
156 9 0.03
157 131 0.50
158 9 0.03
159 109 0.41
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCATGTCTAAGATCAGATCAGACCGAGGGTTGAGACAGCAGGATCGAT
AGCACGCAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGCTGAGCGCCC
GCACGCCTGTTTCATGGGTTGACTTAG
Found at i:23157913 original size:159 final size:159
Alignment explanation
Indices: 23157612--23158035 Score: 388
Period size: 159 Copynumber: 2.7 Consensus size: 159
23157602 CAGGGGGGAT
* * * * *
23157612 CGGGCCGATCCCAGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACTCCCATTTTG
1 CGGGCCGATCCCAGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCCCATTTCG
* ** * * ***
23157677 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGC
66 TGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCACTAGCCAGACCCAGGGTTACCGC
**
23157742 AGTGGGACCGACAGCACGTAGAGAGAGAC
131 AGCAGGACCGACAGCACGTAGAGAGAGAC
* * * * *
23157771 CGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCGCCTGCTCGCTCATTTCG
1 CGGGCCGATCCCAGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCCCATTTCG
* * * * *
23157836 TGGGTTGACTTATGCGTACAGAGTTCATTCCCA-GTCTAAG-ATTGGACCGGACCCAGGGTTACC
66 TGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCTAAGCACTAG-CCAGACCCAGGGTTACC
* * * * *
23157899 GCAGCAGGATCGACAGAACGCAG-GGGGGAC
129 GCAGCAGGACCGACAGCACGTAGAGAGAGAC
* * * * * ** * * * * * * *
23157929 CAGGTCGATCCAAGGCTTGTGCATTCTGCCTCTCCGGTCGGTTGACCACCCGTACGCTCGTTTCG
1 CGGGCCGATCCCAGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCCCATTTCG
*
23157994 TGGGTTGGCTTAGGCATAC-GTAGTTCATTCCATGTCTAAGCA
66 TGGGTTGACTTAGGCATACAG-AGTTCATTCCATGTCTAAGCA
23158036 TATGGAGTTC
Statistics
Matches: 210, Mismatches: 50, Indels: 10
0.78 0.19 0.04
Matches are distributed among these distances:
157 4 0.02
158 86 0.41
159 117 0.56
160 3 0.01
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (159 bp):
CGGGCCGATCCCAGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCCCATTTCG
TGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCACTAGCCAGACCCAGGGTTACCGC
AGCAGGACCGACAGCACGTAGAGAGAGAC
Found at i:23158036 original size:26 final size:26
Alignment explanation
Indices: 23158007--23158059 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23157997 GTTGGCTTAG
*
23158007 GCATACGTAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
23158033 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23158059 G
1 G
23158060 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23159450 original size:26 final size:26
Alignment explanation
Indices: 23159420--23159472 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23159410 GTAGACTTAG
*
23159420 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATACCCAATCTAA
* *
23159446 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAATCTAA
23159472 G
1 G
23159473 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAATCTAA
Found at i:23159950 original size:26 final size:26
Alignment explanation
Indices: 23159920--23159972 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23159910 GTTGCTTTAG
23159920 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
23159946 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
23159972 G
1 G
23159973 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:23160589 original size:26 final size:26
Alignment explanation
Indices: 23160559--23160618 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
23160549 GTTGGCTTAG
23160559 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
23160585 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23160611 G-AT-CGGAG
1 GCATACGGAG
23160619 CGGACCAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 4 0.13
25 2 0.06
26 22 0.71
27 3 0.10
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23160785 original size:26 final size:26
Alignment explanation
Indices: 23160755--23160807 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23160745 GTTGACTTAG
*
23160755 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23160781 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23160807 G
1 G
23160808 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23161246 original size:158 final size:158
Alignment explanation
Indices: 23160781--23161281 Score: 423
Period size: 158 Copynumber: 3.2 Consensus size: 158
23160771 CCCAGTCTAA
* * * * * *
23160781 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCAAGGGTTGCGACAGTAGGATCGAC
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * **
23160845 AGCACGCAA-GGGGGACTGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCCACCGGCTAAGTG
65 AGCACG-AAGGGGGGACCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCTGACCGGCTAAGTG
* * * *
23160909 -CCTGC-ACTCCCATTTCTTGGATTGGCTTAG
129 CCCT-CAAGT-TCATTTCATGGGTTGGCTTAG
* * * * *
23160939 GCATAGGGAGTTCATTCCATGTCTAA-ACCCCAG-CCGGACCGAGCGTTGTGGCAGCGGGA-CTG
1 GCATACGAAGTTCATTCCATGTCTAAGA--TCAGACCGGACCGAGGGTTGTGGCAGCAGGATC-G
** * ** * * *
23161001 GTAGCACGTAGAGGGGGACCGAGCCAATCCCC-AGCTTGCACATTGTGCCTCTCTGGCCGGCTCA
63 ACAGCACGAAG-GGGGGACCGAGCTGATCCCCGA-CTTGCGCATTCTGCCTCTCTGACCGGCT-A
** * * ** * * *
23161065 A-CACCGT-ACGTTTGTTTCGTGGGTTGACTTAT
125 AGTGCCCTCAAGTTCATTTCATGGGTTGGCTTAG
* * * * *
23161097 TCATACGAAGTTCATTCCCA-GTCTAAGATCGGACTGGACCGAGGGTTGTGGTAGCAAGATCGAC
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* *
23161161 AGCACGAAGGGGGGACCGAGCTGATCCCCGACTTGCGCATTCTACCTCTCTGACCGGCTGAGTGC
65 AGCACGAAGGGGGGACCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCTGACCGGCTAAGTGC
23161226 CCTCAAGTTCATTTCATGGGTTGGCTTAG
130 CCTCAAGTTCATTTCATGGGTTGGCTTAG
23161255 GCATAC-AGAGTTCATTCCATGTCTAAG
1 GCATACGA-AGTTCATTCCATGTCTAAG
23161282 CATACGGAGT
Statistics
Matches: 261, Mismatches: 63, Indels: 38
0.72 0.17 0.10
Matches are distributed among these distances:
156 1 0.00
157 57 0.22
158 151 0.58
159 48 0.18
160 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGAAGGGGGGACCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCTGACCGGCTAAGTGCC
CTCAAGTTCATTTCATGGGTTGGCTTAG
Found at i:23162297 original size:159 final size:159
Alignment explanation
Indices: 23161950--23162478 Score: 573
Period size: 158 Copynumber: 3.3 Consensus size: 159
23161940 CTGAGCATTC
*
23161950 ACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCAAACTGG
1 ACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGATCAAACTGG
* * *
23162014 ACTGAGGGTTGCGACAGCAGGATCGACAGCACGT--AAGGGTGACCGGGCCGATCCCTGGCTTAC
65 ACTGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAAGGG-GATCGGGCCGATCCCTGGCTTGC
* * *
23162077 GTATTCTGCCTCTCCGACCGACTGAGCACCT
129 GCATTCTGCCTCTCCGATCGACTGAGCGCCT
* * * * * ** * *
23162108 GCACGCCCGTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA-TCGA
1 ACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAAACT-GG
* * * * * * * *
23162172 ACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGTAGAAGAGGATCGAGCCGATCCCCGACTTGCG
65 ACTGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAAGGGGATCGGGCCGATCCCTGGCTTGCG
* *
23162237 CATTATGCCTCTCCGATCGACTCAGCGCCT
130 CATTCTGCCTCTCCGATCGACTGAGCGCCT
** * ** ****
23162267 ACACGCTCGTTTTGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCGGTCTAAGATTGGGCTGGA
1 ACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAAACTGGA
* * * * * *
23162332 CTGAGGGTTGCAGCAGCAGGATCGATAGCACCTAG-GGGGGATCGGGCCGATCCTTGGCTTGTGC
66 CTGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAAGGGGATCGGGCCGATCCCTGGCTTGCGC
* * *
23162396 ATTCTGCCTCTCCGGTCGATTGAGCGCCC
131 ATTCTGCCTCTCCGATCGACTGAGCGCCT
* * *
23162425 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAG
1 ACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
23162479 CATACGGAGT
Statistics
Matches: 298, Mismatches: 68, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
157 1 0.00
158 171 0.57
159 121 0.41
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
ACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAAACTGGA
CTGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAAGGGGATCGGGCCGATCCCTGGCTTGCGC
ATTCTGCCTCTCCGATCGACTGAGCGCCT
Found at i:23162609 original size:184 final size:183
Alignment explanation
Indices: 23162388--23162846 Score: 567
Period size: 184 Copynumber: 2.5 Consensus size: 183
23162378 CCGATCCTTG
* * *
23162388 GCTTGTGCATTCTGCCTCTCCGGTCGATTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
1 GCTTGTGCATTCTGCCTCTCCGGTCGACTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
* * * *
23162453 CATACGGAGTTCATTCCATATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC
66 CATACGGAGTTCATTCCA-ATCTAAGCATACGAAGTTCATTCCCAGTCTAACATCAGACCAGACC
* * * *
23162518 AAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGGGGGGACTGAGTCGATCCCCA
130 AAGGGTTGCGGTAGCAGGATCAGCAGCACGCAGGGAGGACCGAGCCGATCCCCA
* **
23162572 GCTTATGCATTCTGCCTCTCCGGTCGACTAAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGG
1 GCTTGTGCATTCTGCCTCTCCGGTCGACTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
* * * **
23162637 CATATGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAACATTGGACCAGACC
66 CATACGGAGTTCAT-TCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAACATCAGACCAGACC
* * * * * * **
23162702 GAGGGTTGCGGTAGTAGGATTAGCAGCATGCAGTGAGGACCGGGCCGATCCCTG
130 AAGGGTTGCGGTAGCAGGATCAGCAGCACGCAGGGAGGACCGAGCCGATCCCCA
* * * * * * * *
23162756 GCTTGTGCATTATGCCTCTCCAGTCGGCTCAGTGCCCGAAAGCTCATTTCATGGGTTGACTTAGG
1 GCTTGTGCATTCTGCCTCTCCGGTCGACTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
*
23162821 CATACGGAGTTCATTCCCAGTCTAAG
66 CATACGGAGTTCATT-CCAATCTAAG
23162847 ATTAGACCAG
Statistics
Matches: 233, Mismatches: 40, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
184 230 0.99
185 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (183 bp):
GCTTGTGCATTCTGCCTCTCCGGTCGACTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
CATACGGAGTTCATTCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAACATCAGACCAGACCA
AGGGTTGCGGTAGCAGGATCAGCAGCACGCAGGGAGGACCGAGCCGATCCCCA
Found at i:23163006 original size:26 final size:26
Alignment explanation
Indices: 23162977--23163029 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23162967 GTTGGCTTAG
23162977 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
*
23163003 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
23163029 G
1 G
23163030 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATGTCTAA
Found at i:23163495 original size:26 final size:26
Alignment explanation
Indices: 23163459--23163511 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23163449 TTTGGCTTAG
*
23163459 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23163485 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23163511 G
1 G
23163512 ATTTTTTGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23165257 original size:26 final size:26
Alignment explanation
Indices: 23165220--23165272 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23165210 GTTGATTTAG
*
23165220 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
23165246 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
23165272 G
1 G
23165273 ATCTTACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:23166496 original size:159 final size:157
Alignment explanation
Indices: 23166309--23166701 Score: 409
Period size: 159 Copynumber: 2.5 Consensus size: 157
23166299 CGCATGCCCG
* * * * *
23166309 TTTCGTTGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGAATCGAGGGT
1 TTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAG-ACCAGACCGAACCGAGGGT
* *
23166373 TGTGGCAGTGGGATC-AGCAGCACGCAGAGAGG-GACCGGGCCGATCCTCGGCTTACGCATTATG
64 TGCGGCAGTAGGATCGA-CAGCACGCAG-GAGGTGACCGGGCCGATCC-CGGCTTACGCATTATG
* * ** *
23166436 CCTCTTCGACTGGCTCAGTGCCCGTACA-CTCA
126 CCTCTTCGACAGGCTAAGCACCCGCA-AGCTCA
* * * *
23166468 TTTCGTAGGTTGACTTAGGTATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTT
1 TTTCGTAGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGACCAGACCGAACCGAGGGTT
* * * * * *
23166533 GCGGTAGTAGGATCGACAGCACGTAGGGGGTGACCGGGCCGGTCCCGGCTTGCGCATTCTGCCTC
65 GCGGCAGTAGGATCGACAGCACGCAGGAGGTGACCGGGCCGATCCCGGCTTACGCATTATGCCTC
* *
23166598 TTCGGCAGGCTAAGCACCCGCAAGCTCG
130 TTCGACAGGCTAAGCACCCGCAAGCTCA
* * * * *
23166626 TTTCGTGGGTTG-CTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGGACCAAGGGTT
1 TTTCGTAGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGACCAGACCGAACCGAGGGTT
*
23166690 GCGGTAGTAGGA
65 GCGGCAGTAGGA
23166702 CCAGCAATAG
Statistics
Matches: 200, Mismatches: 29, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
157 61 0.31
158 54 0.27
159 81 0.41
160 4 0.02
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (157 bp):
TTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGACCAGACCGAACCGAGGGTTG
CGGCAGTAGGATCGACAGCACGCAGGAGGTGACCGGGCCGATCCCGGCTTACGCATTATGCCTCT
TCGACAGGCTAAGCACCCGCAAGCTCA
Found at i:23166673 original size:157 final size:159
Alignment explanation
Indices: 23166147--23166707 Score: 460
Period size: 158 Copynumber: 3.5 Consensus size: 159
23166137 TGCTCGTACA
* * * * * * *
23166147 CTCGTTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAA
1 CTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * ** * * * * * * ** *
23166212 AGTTACGACAGCAGGAT-TGACAGCACGCAGAG-GGGATCGGGTCGATCTTCGACTTGTGCATTT
66 GGTTGCGGTAGTAGGATCAG-CAGCACGCAGAGAGGGACCGGGCCGATCCTCGGCTTACGCATTA
* * * * * ** *
23166275 TGCCCCTCCGGTC--GATCGAGTGCCCGCATG
130 TGCCTCTTC-GACAGGCT-AAGCACCCGCAAG
* * * ** * * *
23166305 CCCGTTTCGTTGGTTGACTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGAATCG
1 CTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCG
* * *
23166368 AGGGTTGTGGCAGTGGGATCAGCAGCACGCAGAGAGGGACCGGGCCGATCCTCGGCTTACGCATT
64 AGGGTTGCGGTAGTAGGATCAGCAGCACGCAGAGAGGGACCGGGCCGATCCTCGGCTTACGCATT
* * ** *
23166433 ATGCCTCTTCGACTGGCTCAGTGCCCGTACA-
129 ATGCCTCTTCGACAGGCTAAGCACCCGCA-AG
* * *
23166464 CTCATTTCGTAGGTTGACTTAGGTATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAG
1 CTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * * *
23166529 GGTTGCGGTAGTAGGATC-GACAGCACGTAG-GGGGTGACCGGGCCGGTCC-CGGCTTGCGCATT
66 GGTTGCGGTAGTAGGATCAG-CAGCACGCAGAGAGG-GACCGGGCCGATCCTCGGCTTACGCATT
* *
23166591 CTGCCTCTTCGGCAGGCTAAGCACCCGCAAG
129 ATGCCTCTTCGACAGGCTAAGCACCCGCAAG
* * *
23166622 CTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGGACCAAG
1 CTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
*
23166686 GGTTGCGGTAGTAGGACCAGCA
66 GGTTGCGGTAGTAGGATCAGCA
23166708 ATAGGATCGA
Statistics
Matches: 325, Mismatches: 65, Indels: 27
0.78 0.16 0.06
Matches are distributed among these distances:
157 67 0.21
158 127 0.39
159 126 0.39
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
CTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
GGTTGCGGTAGTAGGATCAGCAGCACGCAGAGAGGGACCGGGCCGATCCTCGGCTTACGCATTAT
GCCTCTTCGACAGGCTAAGCACCCGCAAG
Found at i:23168559 original size:26 final size:25
Alignment explanation
Indices: 23168529--23168580 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
23168519 GTTGGCTTAG
23168529 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
**
23168555 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
23168580 G
1 G
23168581 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:23168911 original size:26 final size:26
Alignment explanation
Indices: 23168875--23168927 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23168865 GTTGACTTAG
*
23168875 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23168901 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23168927 G
1 G
23168928 ATCAAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23169269 original size:159 final size:157
Alignment explanation
Indices: 23168897--23169294 Score: 381
Period size: 159 Copynumber: 2.5 Consensus size: 157
23168887 CATCCCCAGT
* * * ** * *
23168897 CTAA-GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCAAGGGTTGCGACAGCAATAT
1 CTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGAACCGAGGGTTGTGGTAGCAAGAC
* * *
23168961 CGACAGCACGCAGGGGGACCGAGTCAATCTCTGACTTGTGCATTCTGCGTCCCCGACTGGCTGAG
66 CGACAGCACGCAGGGGGACCGAGTCAATCTCTGACTTGCGCATTATGCCTCCCCGACTGGCTGAG
** * *
23169026 TGCCCGCACGACCGTTTCGTGGGTTGG
131 CACCCGAACGACCGTTTCGTGGGTTGA
* * ** * * * * *
23169053 CTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCTAGCTGGACCGAAGGTTGTGGTAGCGAGA
1 CTAAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAAACTGAACCGAGGGTTGTGGTAGCAAGA
* * * * * * **
23169117 CCGGCAGCATGCAGAGGGGGATCGGGTCGATC-CATGACTTGCGCATTATGCCTCTCCGGTTGGC
65 CCGACAGCACGC--AGGGGGACCGAGTCAATCTC-TGACTTGCGCATTATGCCTCCCCGACTGGC
*
23169181 TTAGCACCCGAACG-CTCGTTTCGTGGGTTGA
127 TGAGCACCCGAACGAC-CGTTTCGTGGGTTGA
* * * *
23169212 CTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGAACCGAGGGTTATGGTAGTAGGAT
1 CTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGAACCGAGGGTTGTGGTAGCAAGAC
*
23169277 GGACAGCACGCAGTGGGG
66 CGACAGCACGCAG-GGGG
23169295 GACTGGGATG
Statistics
Matches: 186, Mismatches: 48, Indels: 14
0.75 0.19 0.06
Matches are distributed among these distances:
156 6 0.03
157 52 0.28
158 6 0.03
159 119 0.64
160 3 0.02
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.22
Consensus pattern (157 bp):
CTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGAACCGAGGGTTGTGGTAGCAAGAC
CGACAGCACGCAGGGGGACCGAGTCAATCTCTGACTTGCGCATTATGCCTCCCCGACTGGCTGAG
CACCCGAACGACCGTTTCGTGGGTTGA
Found at i:23169759 original size:26 final size:26
Alignment explanation
Indices: 23169730--23169782 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23169720 GTTGGCTTAG
23169730 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23169756 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23169782 G
1 G
23169783 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23170465 original size:26 final size:26
Alignment explanation
Indices: 23170435--23170487 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23170425 GTTGGCTTAG
23170435 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
23170461 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23170487 G
1 G
23170488 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23174957 original size:159 final size:158
Alignment explanation
Indices: 23174668--23175095 Score: 448
Period size: 159 Copynumber: 2.7 Consensus size: 158
23174658 TAGCACGTAG
* * * *
23174668 GGGGATCGAGCCGATCCCCTGCTT-CTGCATTCTGCCTCTCCGACCGGTTGAGTGCCCGCACGCC
1 GGGGACCGAGCCGATCCCCAGCTTGC-GCATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACGCT
* * * * ** * *
23174732 CATTTCTTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATTGAGGG
65 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACCAGACTGAGGG
* * *
23174797 TTGTGGTAGCGGGA-CTGGCAGCACGCAGAA
130 TTGTGGCAGCAGGATC-GACAGCACGCA-AA
* * * * ** *
23174827 GGGGACCGAGCCGATCCTCGGCTTGCCCATTATGCCTCTCCGGTCGGTTCAGCGCCCGCACGCTC
1 GGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACGCTC
* * *
23174892 ATTTCATGGGTTGGCTTTGGCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCAGACTGAGGG
66 ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCCAACCAGACTGAGGG
*
23174956 TTGTGGCAGCAGGATCGACAGCACGCAAG
130 TTGTGGCAGCAGGATCGACAGCACGCAAA
* * * * * * ** *
23174985 GGGGACTGGGCTGGTCCCCAGCTTGCGCATTCTACCTCTCTGACCGACTGAGCGCCCGCATGCTC
1 GGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACGCTC
* * * *
23175050 GTTTCGTGGGTTGGCTTAGCCATACAGAGTTCATTCCATGTCTAAG
66 ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
23175096 GATACGGAGT
Statistics
Matches: 219, Mismatches: 46, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
157 3 0.01
158 87 0.40
159 124 0.57
160 5 0.02
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.24
Consensus pattern (158 bp):
GGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACGCTC
ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACCAGACTGAGGGT
TGTGGCAGCAGGATCGACAGCACGCAAA
Found at i:23175107 original size:26 final size:26
Alignment explanation
Indices: 23175071--23175121 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23175061 TGGCTTAGCC
23175071 ATACAGAGTTCATTCC-ATGTCTAAGG
1 ATACAGAGTTCATTCCTA-GTCTAAGG
*
23175097 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACAGAGTTCATTCCTAGTCTAAG
23175122 ATCGAACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCTAGTCTAAGG
Found at i:23175776 original size:159 final size:158
Alignment explanation
Indices: 23175512--23175975 Score: 373
Period size: 159 Copynumber: 2.9 Consensus size: 158
23175502 CAGACTGGAT
* * *
23175512 CGAGGGTTGCGGCAGCAGGATCGACATCACGCAGGGGGGACCAGGCCGATCCTCGGCTTGCGCAT
1 CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCAAGCCGATCCCCGGCTTGCGCAT
* * * * * * *
23175577 TCTACCTCTCCGATCGGCTAAGCCCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
66 TATACCTCTCCGACCCGCTAAGCCCCCGAACACCCGTTTCGTGGGTCGACTTAGGCATACGGAGT
23175642 TCATTCCATGTCTAAGCCCTAGCCAGAC
131 TCATTCCATGTCTAAGCCCTAGCCAGAC
* ** * ** *
23175670 CGAGGGTTGTGGCAGTGGGATTGACAGCACGCAGAGGGGGACCAAGTTGATCCCCGGTTTGCGCA
1 CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG-GGGGGACCAAGCCGATCCCCGGCTTGCGCA
* * *
23175735 TTATGCCTCTCCGACCCGCTCAA-CGCCCGAACGA-TCGTTTCGTGGGTCGACTTAGGCATACGG
65 TTATACCTCTCCGACCCGCT-AAGCCCCCGAAC-ACCCGTTTCGTGGGTCGACTTAGGCATACGG
* ** * **
23175798 AGTTCATTCCCA-ATCTAAGATC-GGACTGGAC
128 AGTTCATT-CCATGTCTAAGCCCTAG-CCAGAC
* * * * ** * * * * *
23175829 TGAGGGTTGCAGCAGTAGGATCGACAGCAC-CTAGGGGGGATCGGGTCGGTCCCTGGCATGTGCA
1 CGAGGGTTGCGGCAGCAGGATCGACAGCACGC-AGGGGGGACCAAGCCGATCCCCGGCTTGCGCA
* * * * * ** * * * * * *
23175893 TTCTGCCTCTCCG-GCCGACTGAGCACCCTCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGA
65 TTATACCTCTCCGACCCG-CTAAGCCCCCGAACACCCGTTTCGTGGGTCGACTTAGGCATACGGA
23175957 GTTCATTCCATGTCTAAGC
129 GTTCATTCCATGTCTAAGC
23175976 ATACAGAGTT
Statistics
Matches: 243, Mismatches: 53, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
157 7 0.03
158 111 0.46
159 119 0.49
160 6 0.02
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCAAGCCGATCCCCGGCTTGCGCAT
TATACCTCTCCGACCCGCTAAGCCCCCGAACACCCGTTTCGTGGGTCGACTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCTAGCCAGAC
Found at i:23175953 original size:158 final size:157
Alignment explanation
Indices: 23175480--23175974 Score: 482
Period size: 158 Copynumber: 3.1 Consensus size: 157
23175470 CTAACTTACA
* *
23175480 GAGTTCATTCCCAGTCTAAGATCAGACTGGA-TCGAGGGTTGCGGCAGCAGGATCGACATCACGC
1 GAGTTCATTCCCAGTCTAAGATCAGACTGGACT-GAGGGTTGCGGCAGTAGGATCGACAGCACGC
* * * *
23175544 AGGGGGGACCAGGCCGAT-CCTCGGCTTGCGCATTCTACCTCTCCGATCGGCTAAGCCCCCGCAC
65 AGGGGGGACCAGGTCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGA-CCGCTAAGCACCCGCAC
* * *
23175608 ACCCGTTTCGTGGGTTGGCTTAGGCATAGG
128 GCTCGTTTCGTGGGTTGGCTTAGGCATACG
** ** * * * *
23175638 GAGTTCATT-CCATGTCTAAGCCCTAG-CCAGACCGAGGGTTGTGGCAGTGGGATTGACAGCACG
1 GAGTTCATTCCCA-GTCTAAGATC-AGACTGGACTGAGGGTTGCGGCAGTAGGATCGACAGCACG
* * * * * * *
23175701 CAGAGGGGGACCAAGTTGATCCCCGGTTTGCGCATTATGCCTCTCCGACCCGCTCAA-CGCCCGA
64 CAG-GGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGA-CCGCT-AAGCACCCGC
* * *
23175765 ACGATCGTTTCGTGGGTCGACTTAGGCATACG
126 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * *
23175797 GAGTTCATTCCCAATCTAAGATCGGACTGGACTGAGGGTTGCAGCAGTAGGATCGACAGCAC-CT
1 GAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGTAGGATCGACAGCACGC-
* * * * * * * *
23175861 AGGGGGGATCGGGTCGGTCCCTGGCATGTGCATTCTGCCTCTCCGGCCGACTGAGCACCCTCACG
65 AGGGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCG-CTAAGCACCCGCACG
* *
23175926 CTCATTTCGTGGGTTGGCTTAGGCATACA
129 CTCGTTTCGTGGGTTGGCTTAGGCATACG
23175955 GAGTTCATT-CCATGTCTAAG
1 GAGTTCATTCCCA-GTCTAAG
23175975 CATACAGAGT
Statistics
Matches: 266, Mismatches: 59, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 10 0.04
158 131 0.49
159 118 0.44
160 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGTAGGATCGACAGCACGCA
GGGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGCTAAGCACCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACG
Found at i:23175998 original size:26 final size:26
Alignment explanation
Indices: 23175948--23176000 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23175938 GTTGGCTTAG
*
23175948 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
23175974 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
23176000 G
1 G
23176001 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:23176172 original size:196 final size:196
Alignment explanation
Indices: 23175838--23176197 Score: 499
Period size: 196 Copynumber: 1.8 Consensus size: 196
23175828 CTGAGGGTTG
* * * * * *
23175838 CAGCAGTAGGATCGACAGCACCTAGGGGGGATCGGGTCGGTCCCTGGCATGTGCATTCTGCCTCT
1 CAGCAGTAGGATCGACAGCACCTAGGGGGGATCAGGTCGATCCCCGACATGCGCATTCTACCTCT
* * *
23175903 CCGGCCGACTGAGCACCCTCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAT
66 CCGGCCGACTGAGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAT
23175968 GTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGA
131 GTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGA
23176033 C
196 C
* **
23176034 CAGCAGTAGGATCGACAGCACGC-AGGGGGGA-CTAGGTTGATCCCCGATTTGCGCATTCTACCT
1 CAGCAGTAGGATCGACAGCAC-CTAGGGGGGATC-AGGTCGATCCCCGACATGCGCATTCTACCT
* * * ** *
23176097 CTCCGGTCGGCTGAGCGCCCGCACACTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
64 CTCCGGCCGACTGAGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCC
* * *
23176162 ATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGA
129 ATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGA
23176198 GTTTGAGCAA
Statistics
Matches: 141, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
195 1 0.01
196 139 0.99
197 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (196 bp):
CAGCAGTAGGATCGACAGCACCTAGGGGGGATCAGGTCGATCCCCGACATGCGCATTCTACCTCT
CCGGCCGACTGAGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAT
GTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGA
C
Found at i:23176174 original size:26 final size:26
Alignment explanation
Indices: 23176144--23176196 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23176134 GTTGGCTTAG
23176144 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
23176170 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
23176196 G
1 G
23176197 AGTTTGAGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:23177660 original size:159 final size:159
Alignment explanation
Indices: 23177372--23177861 Score: 495
Period size: 159 Copynumber: 3.1 Consensus size: 159
23177362 CTAAGCATGC
* * * * *
23177372 GGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
1 GGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACAC
* * * * * ** * * * *
23177437 AGGGG-GGACC-GAGTCGATCCCCGGTTTGCGCATTCTACCTCTCTAGCCAGTTGAGCACCCGCA
66 AGGGGTGGACCAG-GCCAATCCCCAGCTTGCGCATTATACCTCTCCGGCCAGCTCAACGCCCGCA
* * *
23177500 CGCCCATTTTATGGGTTGGCTAAGGCATAG
130 CGCTCATTTCATGGGTTGGCTTAGGCATAG
* * * * *
23177530 GGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGCAGCGGGATCGGCAGGAC
1 GGAGTTCATTCCCA-GTCTAAG-ACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCAC
* * * * * *
23177593 ACAGTGGG-GGATCGGGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCG
64 ACAG-GGGTGGACCAGGCCAATCCCCAGCTTGCGCATTATACCTCTCCGGCCAGCTCAACGCCCG
* *
23177657 CACGCTCATTTCATGGGTTGACTTAGGCATAC
128 CACGCTCATTTCATGGGTTGGCTTAGGCATAG
* * * * *
23177689 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATTGACAGCACGC
1 GGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACAC
* * * *
23177754 AGGGGTGGACCAGGCCGATCCCTAGCTTGCGCATTCTACCTCTCCGGCCAGCTGAACGCCCGCAC
66 AGGGGTGGACCAGGCCAATCCCCAGCTTGCGCATTATACCTCTCCGGCCAGCTCAACGCCCGCAC
* * *
23177819 GCTCGTTTCGTGGGTTGGCTTAGCCATAG
131 GCTCATTTCATGGGTTGGCTTAGGCATAG
* *
23177848 GTAGTTCATCCCCA
1 GGAGTTCATTCCCA
23177862 ATTTAAGCAT
Statistics
Matches: 269, Mismatches: 56, Indels: 13
0.80 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 55 0.20
159 207 0.77
160 4 0.01
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.21
Consensus pattern (159 bp):
GGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACAC
AGGGGTGGACCAGGCCAATCCCCAGCTTGCGCATTATACCTCTCCGGCCAGCTCAACGCCCGCAC
GCTCATTTCATGGGTTGGCTTAGGCATAG
Found at i:23178320 original size:157 final size:157
Alignment explanation
Indices: 23177868--23178367 Score: 499
Period size: 157 Copynumber: 3.2 Consensus size: 157
23177858 CCCAATTTAA
* * ** * * *
23177868 GCATACGGGGTTCATTCCCAGTCTAAGAT-TGCACCAGAATGAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGTGGTAGCAGGATCAAC
* ** * *
23177932 ATCACGCAGGGGGGACCAAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTAAGCTC
65 AACACGCAGGGGGGA-CGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGTCGGCTAAGCAC
* *
23177997 CCGCATGCCCATTTCAT-GGTTGGCTTAG
129 CCGCACGCTCATTTCATGGGTTGGCTTAG
* ** ** **
23178025 GCATAGGGAGTTCATTCCTTGTCTAAGCCCTAG-CCAGACCGAGGGTTGTGGTAGTGGGA-CAAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACCGAGGGTTGTGGTAGCAGGATCAA-
* * * * * * *
23178088 CAGCACGCAGAGGGGGACAGGGTCGATCCCTGACTTGCACATTATGCCTCTCCGGTCGACTTAGG
64 CAACACGCAG-GGGGGAC-GGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGTCGGCTAAGC
* * * * * ***
23178153 GCCCGAACGCTCGTTCCGTGGGTCAACTTAG
127 ACCCGCACGCTCATTTCATGGGTTGGCTTAG
23178184 GCATACGGAGTTCATTCCCAGTCTAA-ATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCAACA
* * * * *
23178248 ACACGCAGGGGGGATCGGGCCGGTCCCTGGCTTGCACATTCCGCCTCTTCGGCCGGCTGAGCACC
66 ACACGCAGGGGGGA-CGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGTCGGCTAAGCACC
*
23178313 CTCACGCTCATTTCATGGGTTGGCTTAG
130 CGCACGCTCATTTCATGGGTTGGCTTAG
*
23178341 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
23178368 CATACGGAGT
Statistics
Matches: 270, Mismatches: 62, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
156 5 0.02
157 140 0.52
158 90 0.33
159 35 0.13
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCAACA
ACACGCAGGGGGGACGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGTCGGCTAAGCACCC
GCACGCTCATTTCATGGGTTGGCTTAG
Found at i:23178391 original size:26 final size:26
Alignment explanation
Indices: 23178341--23178393 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23178331 GTTGGCTTAG
*
23178341 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
23178367 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
23178393 G
1 G
23178394 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:23179022 original size:159 final size:158
Alignment explanation
Indices: 23178755--23179063 Score: 433
Period size: 159 Copynumber: 1.9 Consensus size: 158
23178745 AAGATCAGAT
* * *
23178755 CGGACCGAGGGTTGTGGTAGTAGGATCAGCAGCACGTAAGGGGGACCGGGCTGATCCTCGACTTA
1 CGGACCGAGGGTTGTGGTAGCAGGACCAGCAGCACGAAAGGGGGACCGGGCTGATCCTCGACTTA
* **
23178820 CGCATTCTTCCTCTCTGACCGGTTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
66 CGCATTCTGCCTCTCTGACCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
23178885 GGAGTTCATTCCATGTCTAATCCCCAGC
131 GGAGTTCATTCCATGTCTAATCCCCAGC
* * * *
23178913 CGGACCGAGGGTTGTGGTAGCGGGACC-GACAGCATGAAGAGGGGGACTGGG-TCGATCCTCGGC
1 CGGACCGAGGGTTGTGGTAGCAGGACCAG-CAGCACGAA-AGGGGGACCGGGCT-GATCCTCGAC
** * * *
23178976 TTGTGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
63 TTACGCATTCTGCCTCTCTGACCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCA
*
23179041 TATGGAGTTCATTCCATGTCTAA
128 TAGGGAGTTCATTCCATGTCTAA
23179064 GCATATAGAG
Statistics
Matches: 132, Mismatches: 16, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
157 1 0.01
158 32 0.24
159 99 0.75
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (158 bp):
CGGACCGAGGGTTGTGGTAGCAGGACCAGCAGCACGAAAGGGGGACCGGGCTGATCCTCGACTTA
CGCATTCTGCCTCTCTGACCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAATCCCCAGC
Found at i:23179088 original size:26 final size:26
Alignment explanation
Indices: 23179038--23179090 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23179028 GTTGGCTTAG
* *
23179038 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATAGAGTTCATTCCATATCTAA
23179064 GCATATAGAGTTCATTCCCA-ATCTAA
1 GCATATAGAGTTCATT-CCATATCTAA
23179090 G
1 G
23179091 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCATATCTAA
Found at i:23180086 original size:21 final size:21
Alignment explanation
Indices: 23180060--23180116 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
23180050 GAGGGTTGTG
*
23180060 GCAGAGGGGGATCGGCAGCAT
1 GCAGAGGGGGATCGGCAGCAC
*
23180081 GCAGAGGGGGATTGGCAGCAC
1 GCAGAGGGGGATCGGCAGCAC
23180102 GCAGAGGGGGATCGG
1 GCAGAGGGGGATCGG
23180117 GCCGATTCCT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.23, C:0.18, G:0.51, T:0.09
Consensus pattern (21 bp):
GCAGAGGGGGATCGGCAGCAC
Found at i:23181071 original size:26 final size:26
Alignment explanation
Indices: 23181035--23181087 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23181025 TTTGGCTTAG
23181035 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23181061 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23181087 G
1 G
23181088 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23181813 original size:26 final size:26
Alignment explanation
Indices: 23181763--23181815 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23181753 GTTGACTTAG
*
23181763 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
* **
23181789 GCATGTGGAGTTCATTTCCAATCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
23181815 G
1 G
23181816 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAATCTAA
Found at i:23182138 original size:26 final size:26
Alignment explanation
Indices: 23182108--23182159 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23182098 TTGGCTTAGA
*
23182108 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGAAGTTCATTCCCA-GTCTAAG
23182134 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
23182160 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:23182463 original size:171 final size:172
Alignment explanation
Indices: 23182133--23182503 Score: 416
Period size: 171 Copynumber: 2.2 Consensus size: 172
23182123 CCATGTCTAA
* *
23182133 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCGGACCGGACCAAGGGTTGTGGTAGCAGGACCAG
1 GCATACGAAGTTCATT-CCATGTCTAAGCACCAGACCGGACCAAGGGTTGTGGTAGCAGGACCAG
* * * *
23182196 TAGCAAGATCGACAGCATGCAGGGGGGGAGCTAGCCAATCCCTGGCTTGCGCATTCTACCTCTTC
65 TAGCAAGATCGACAACATGCAGAGGGGGAGCTAGCCAATCCCTGGCTTACGCATTATACCTCTTC
* * *
23182261 GGTCGGCTAAGCGGCGGCACGCTCATTTCATGGGTTGGCTTTG
130 GGTCGGCTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * *
23182304 GCATACGAAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGTAGCAGGACCAGT
1 GCATACGAAGTTCATTCCATGTCTAAGCACCAGACCGGACCAAGGGTTGTGGTAGCAGGACCAGT
* * * * *** *
23182368 AGCGAGGTC-AGCAACATGCAGAGGGGGA-TTGGGTTGATCCCTGGCTTACGCATTATGCCTC-T
66 AGCAAGATCGA-CAACATGCAGAGGGGGAGCT-AGCCAATCCCTGGCTTACGCATTATACCTCTT
* * *
23182430 CTGG-CTGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAG
129 C-GGTC-GGCTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAG
*
23182475 GCATAC-AGAGTTCATTCCATGTTTAAGCA
1 GCATACGA-AGTTCATTCCATGTCTAAGCA
23182504 TACGGAGTTC
Statistics
Matches: 168, Mismatches: 25, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
170 9 0.05
171 157 0.93
172 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (172 bp):
GCATACGAAGTTCATTCCATGTCTAAGCACCAGACCGGACCAAGGGTTGTGGTAGCAGGACCAGT
AGCAAGATCGACAACATGCAGAGGGGGAGCTAGCCAATCCCTGGCTTACGCATTATACCTCTTCG
GTCGGCTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAG
Found at i:23182527 original size:26 final size:26
Alignment explanation
Indices: 23182475--23182527 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23182465 GTTGGCTTAG
*
23182475 GCATACAGAGTTCATTCCATGTTTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
23182501 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
23182527 G
1 G
23182528 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:23183234 original size:26 final size:26
Alignment explanation
Indices: 23183198--23183249 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23183188 GTTGACTTAG
23183198 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
23183224 GCATGCGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23183250 AATTGGACTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23183571 original size:26 final size:26
Alignment explanation
Indices: 23183541--23183593 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23183531 GTTGGCTTAG
23183541 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23183567 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23183593 G
1 G
23183594 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23183772 original size:26 final size:26
Alignment explanation
Indices: 23183736--23183788 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23183726 GTTGGCTTAG
*
23183736 GCATGCGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
23183762 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
23183788 G
1 G
23183789 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:23184854 original size:26 final size:26
Alignment explanation
Indices: 23184804--23184856 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23184794 GTTGGCTTAG
*
23184804 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
23184830 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
23184856 G
1 G
23184857 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:23185037 original size:26 final size:26
Alignment explanation
Indices: 23185001--23185053 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23184991 TTTGGCTTAG
23185001 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
23185027 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
23185053 G
1 G
23185054 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:23189074 original size:159 final size:159
Alignment explanation
Indices: 23188903--23189278 Score: 413
Period size: 159 Copynumber: 2.4 Consensus size: 159
23188893 GCCAGCTGAA
* * *
23188903 CACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGTGTTCATTCCATGTCTAA-ACCCTA
1 CACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA-CC-A
* * ** * **
23188967 G-TCGGACCGAGGGTTGTGGCAGCGGGACAGGTAGCACACAGAGGGGGACCGGGCC-GATCCCTA
64 GATCGGACCGAGGGTTGCGGCAGCAGGACAGACAGCACACAGAGGGCGACCAAGCCAG-TCCC-A
*
23189030 GT-TTGCACATTATGCCTCTCCAGCCGACTCAG
127 GTCTTGCACATTATACCTCTCCAGCCGACTCAG
* * * * * *
23189062 CGCCCGCACGCCCATTTCATTGGTTGACTTAGGCATACGGAGTTAATTCCCA-GTCTAAGATCAG
1 CACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAG
* * * *
23189126 ATCGGACCGAGGGTTGCGGTAGCAGGACCGACAGCACGCAGAGGGCGACCAAGCCAGTCCCCGTC
65 ATCGGACCGAGGGTTGCGGCAGCAGGACAGACAGCACACAGAGGGCGACCAAGCCAGTCCCAGTC
* * * ** *
23189191 TTGCGCATTCTACCTCTCCGGCCGGTTGAG
130 TTGCACATTATACCTCTCCAGCCGACTCAG
*
23189221 CACCCGCACG-CCGTTTCATGGTTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
23189279 CAATACGGAG
Statistics
Matches: 178, Mismatches: 33, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.02
158 43 0.24
159 127 0.71
160 5 0.03
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.22
Consensus pattern (159 bp):
CACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGA
TCGGACCGAGGGTTGCGGCAGCAGGACAGACAGCACACAGAGGGCGACCAAGCCAGTCCCAGTCT
TGCACATTATACCTCTCCAGCCGACTCAG
Found at i:23189284 original size:27 final size:27
Alignment explanation
Indices: 23189254--23189305 Score: 88
Period size: 27 Copynumber: 1.9 Consensus size: 27
23189244 TGGCTTAGGC
23189254 ATACGGAGTTCATT-CCATGTCTAAGCA
1 ATACGGAGTTCATTCCCA-GTCTAAGCA
23189281 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
23189306 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
27 21 0.88
28 3 0.12
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (27 bp):
ATACGGAGTTCATTCCCAGTCTAAGCA
Found at i:23189450 original size:185 final size:180
Alignment explanation
Indices: 23189094--23189648 Score: 639
Period size: 184 Copynumber: 3.0 Consensus size: 180
23189084 GTTGACTTAG
* * * * * *
23189094 GCATACGGAGTTAATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGACCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
** * * * *
23189159 GCACGCAGAGGGCGACCAAGCCAGTCCCCGTCTTGCGCATTCTACCTCTCCGGCCGGTTGAGCAC
66 GCACGCAG-GGG-GACCGGGCGA-TCCCCGGCTTGCGCATTCTACCTCTCCGG-CGGCTGAGCGC
*
23189224 CCGCACGCCGTTTCATGGTTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
127 CCGCACGCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
23189278 GCAATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTC-GCAGCAGGATCGG
1 GC-ATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTG-CGGCAGCAGGATCGG
* *
23189342 CAGCACGCAGGGTGGACTGGGCTGATCCTCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCG
64 CAGCACGCAGGG-GGACCGGGC-GATCCCCGGCTTGCGCATTCTACCTCTCCGG-CGGCTGAGCG
* * * * *
23189407 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGAATACAGAGTTCA-TCCCTAGTCTAA
126 CCCGCACGC-CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAA
* * * *
23189463 GCATACGGAGTTCATTCCCAATCTAAGATCAAACCGGATCGAGGGTTGCGGCAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * *
23189528 GTACCCAGGGGGAACCGGACCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGTGCC
66 GCACGCAGGGGG-ACCGG-GCGATCCCCGGCTTGCGCATTCTACCTCTCCGGC-GGCTGAGCGCC
* * *
23189593 CGCATAC-CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAA
128 CGC--ACGCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
23189647 GC
1 GC
23189649 CCCAGCTAGA
Statistics
Matches: 315, Mismatches: 43, Indels: 26
0.82 0.11 0.07
Matches are distributed among these distances:
183 4 0.01
184 201 0.64
185 107 0.34
186 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (180 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
GCACGCAGGGGGACCGGGCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCGGCTGAGCGCCCGC
ACGCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:23189487 original size:26 final size:26
Alignment explanation
Indices: 23189439--23189489 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
23189429 TGACTTAGGA
*
23189439 ATACAGAGTTCATCCCTAGTCTAAGC
1 ATACAGAGTTCATCCCTAATCTAAGC
*
23189465 ATACGGAGTTCATTCCC-AATCTAAG
1 ATACAGAGTTCA-TCCCTAATCTAAG
23189490 ATCAAACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCCTAATCTAAGC
Found at i:23189963 original size:158 final size:157
Alignment explanation
Indices: 23189463--23189964 Score: 502
Period size: 158 Copynumber: 3.2 Consensus size: 157
23189453 CCTAGTCTAA
* * *
23189463 GCATACGGAGTTCATTCCCA-ATCTAAGATCAAACCGGATCGAGGGTTGCGGCAGTAGGATCGGT
1 GCATACGGAGTTCATTCCCATATCTAAGATCAGACCGGAT-GAGGGTTGCGGCAGGAGGATCGAT
* * * * *
23189527 AGTACCCAG-GGGGAACCG-GACCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGT
65 AGCACACAGAGGGG-ACCGAG-CTGATCCCCAGCTTGCGCATTATGCCTCTCCGGC-GGCTGAGC
** * *
23189590 GCCCGCATACCCATTTCATGGGTTGGCTTAG
127 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** ** * *
23189621 GCATAGGGAGTTCATT-CCATATCTAAGCCCCAG-CTAGACTGAGGGTTGTGGCAGCG-GGACCG
1 GCATACGGAGTTCATTCCCATATCTAAG-ATCAGACCGGA-TGAGGGTTGCGGCAG-GAGGATCG
* * ** * *
23189683 ACAGCACGCAGAGGGGGACCGA-CTGATCCCC-GACTTTTGCATTATGCCCTCTCTGGCCGGCTC
63 ATAGCACACAGA-GGGGACCGAGCTGATCCCCAG-CTTGCGCATTATG-CCTCTCCGG-CGGCTG
* * * *
23189746 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAT
124 AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
*
23189780 GCATACGGAGTTCATTCCCAT-TCTAAGATCAGACCGGAGTGAGGGTTGCAGCAGGAGGATCGAT
1 GCATACGGAGTTCATTCCCATATCTAAGATCAGACCGGA-TGAGGGTTGCGGCAGGAGGATCGAT
* * *
23189844 AGCACACAGAGGGGATCGAGCTGATCCCCAGCTTGCGCATTTTGCCTCTCCGGTCGGCTGAACGC
65 AGCACACAGAGGGGACCGAGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGG-CGGCTGAGCGC
*
23189909 CCGCACGCTCATTTTGTGGGTTGGCTTAG
129 CCGCACGCTCATTTCGTGGGTTGGCTTAG
*
23189938 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCATATCTAAG
23189965 CATACGGAGT
Statistics
Matches: 276, Mismatches: 52, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
157 8 0.03
158 143 0.52
159 115 0.42
160 10 0.04
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCATATCTAAGATCAGACCGGATGAGGGTTGCGGCAGGAGGATCGATA
GCACACAGAGGGGACCGAGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:23189974 original size:26 final size:25
Alignment explanation
Indices: 23189938--23190016 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 25
23189928 GTTGGCTTAG
23189938 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
23189964 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCC-AGTCTAA
*
23189990 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
23190016 G
1 G
23190017 ATTTTGGGCC
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
26 47 0.94
27 3 0.06
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:23191085 original size:159 final size:157
Alignment explanation
Indices: 23190759--23191286 Score: 516
Period size: 159 Copynumber: 3.3 Consensus size: 157
23190749 GAGCACTCGT
* * *
23190759 ACGCTCATTTTC-TAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAT
1 ACGCTCA-TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-TCAGAT
* * * *
23190823 CGA-TGGTTGCGGTAGCAGGATCCG-CAGTACGCAGGGGGGATTGGGTCGATCCCCGGCTTGCGC
64 CGAGT-GTTGTGGTAGCAGGAT-CGACAGCACGCAGGGGGGACTGGGCCGATCCCCGGCTTGCGC
* *
23190886 ATTCTACCTCTCCGACTGACTGAGCA-CCCAC
127 ATTCTACCTCTCCGACTGACTAAG-AGCCCGC
* * **
23190917 ACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCAGAT
1 ACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGTCAGAT
* * * *
23190981 CGAGTGTTGTGGCAGC-GAGATCGACAGCATGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGC
64 CGAGTGTTGTGGTAGCAG-GATCGACAGCACGCAG-GGGGGACTGGGCCGATCCCCGGCTTGCGC
* * * *
23191045 ATTATGCCTCTCCGGCT-AGCTCAGAGCCCGC
127 ATTCTACCTCTCCGACTGA-CTAAGAGCCCGC
* * * * *
23191076 ACGCTCATTTCATGGG-TGGACTTAGGCATACGAAGTTTATTCCCAGTCTAAGATCAGACCGAAC
1 ACGCTCATTTCATGGGTTGG-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGTCAGATC
* * ** * * *
23191140 TGAGGGTTGTGATAGCAGGATCGACAGCACAAAGGGGGGGACTGGGCCAATCCCCTGCTTGCACA
65 -GAGTGTTGTGGTAGCAGGATCGACAGCACGCA-GGGGGGACTGGGCCGATCCCCGGCTTGCGCA
* * *
23191205 TTCTACCTCTTCGACCGACTAAGTGCCCGC
128 TTCTACCTCTCCGACTGACTAAGAGCCCGC
* * *
23191235 ATGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATT-CCATGTCTAAG
1 ACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
23191287 CATACGGAGT
Statistics
Matches: 301, Mismatches: 52, Indels: 33
0.78 0.13 0.09
Matches are distributed among these distances:
157 10 0.03
158 83 0.28
159 199 0.66
160 9 0.03
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
ACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGTCAGATCG
AGTGTTGTGGTAGCAGGATCGACAGCACGCAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTC
TACCTCTCCGACTGACTAAGAGCCCGC
Found at i:23191310 original size:26 final size:26
Alignment explanation
Indices: 23191260--23191312 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23191250 GTTGGCTTAG
* *
23191260 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
23191286 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
23191312 G
1 G
23191313 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:23191622 original size:171 final size:167
Alignment explanation
Indices: 23191424--23191986 Score: 476
Period size: 171 Copynumber: 3.4 Consensus size: 167
23191414 CGACCGATCA
* *
23191424 AGCACCCGCACACTTATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCT
1 AGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCT
*
23191489 AGTTGGACTGAGGGTTGTGGCAGCAGGACTGGCAGTGGGATCGGCAGCATGCAGAGGGGGACCGG
66 AG-TGGACTGAGGGTTGTGCCAGCAGGACTGGCAGTGGGATCGGCAGCATGCAGAGGGGGACCGG
*
23191554 GCTGATCCTCGGTTTACGCATTATGCCTCTCCGGACGACTG
130 GCTGATCC-CGGCTTACGCATTATGCCTCTCC-GACG-CTG
* * * * *
23191595 AGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGAATACAGAGTTCA-TCCCTAGTCTAAG-CA
1 AGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAT-GTCTAAGCCC
* * * * * * ** ***
23191658 TA-TGGAGTTCA----T-TCCCAGTCTAAGA-TCGG-A-TCGGATC-G-AG--GGTTGACTAGG-
65 TAGTGGA-CTGAGGGTTGTGCCAG-C-AGGACT-GGCAGTGGGATCGGCAGCATGCAGAGGGGGA
* * * * *
23191709 TCGGG-TCGATCCCCAGCTTATGCATTCTGCCTCTCCGACTGGTCG
126 CCGGGCT-GAT-CCCGGCTTACGCATTATGCCTCTCCGAC-GCT-G
* * * *
23191754 AGCACCCACACGCTCATTTCGTGGGTTGGCTTAGGCAAACGGAGTTCATTCCATGTCTAAGCCCT
1 AGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCT
* * *
23191819 AGCTGGACCGAGGGTTGTGCCAGTAGGACTGGCAGCGGGATCGGCAGCATGCAGAGGGGGACCGG
66 AG-TGGACTGAGGGTTGTGCCAGCAGGACTGGCAGTGGGATCGGCAGCATGCAGAGGGGGACCGG
* * * * *
23191884 GCTGATCCCTGACTTGCACATTATTCCTCTCCTATCGGCTG
130 GCTGATCCC-GGCTTACGCATTATGCCTCTCCGA-C-GCTG
* * * * *
23191925 AGCGCCCGCACGCTCATTTCATGGGTTGGCATATGCATACGGAGTTTATTCCATGTCTAAGC
1 AGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
23191987 ATACGGAGTT
Statistics
Matches: 299, Mismatches: 64, Indels: 58
0.71 0.15 0.14
Matches are distributed among these distances:
158 5 0.02
159 78 0.26
160 14 0.05
161 1 0.00
162 6 0.02
163 1 0.00
164 15 0.05
165 7 0.02
166 15 0.05
167 1 0.00
168 6 0.02
169 2 0.01
170 15 0.05
171 129 0.43
172 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (167 bp):
AGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCT
AGTGGACTGAGGGTTGTGCCAGCAGGACTGGCAGTGGGATCGGCAGCATGCAGAGGGGGACCGGG
CTGATCCCGGCTTACGCATTATGCCTCTCCGACGCTG
Found at i:23191985 original size:330 final size:330
Alignment explanation
Indices: 23191383--23192013 Score: 883
Period size: 330 Copynumber: 1.9 Consensus size: 330
23191373 GGGGGACCGA
* * *
23191383 GTCGATCCCCGACTTGCGCATTCTGCCACTCCGACCGATCAAGCACCCGCACACTTATTTCATGG
1 GTCGATCCCCGACTTACGCATTCTGCCACTCCGACCGATCAAGCACCCACACACTCATTTCATGG
* * * *
23191448 GTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCTAGTTGGACTGAGGGTTGTGGCAGC
66 GTTGGCTTAGGCAAACAGAGTTCATTCCATGTCTAAGCCCTAGCTGGACCGAGGGTTGTGCCAGC
* ** *
23191513 AGGACTGGCAGTGGGATCGGCAGCATGCAGAGGGGGACCGGGCTGATCCTCGGTTTACGCATTAT
131 AGGACTGGCAGCGGGATCGGCAGCATGCAGAGGGGGACCGGGCTGATCCTCGACTTACACATTAT
* *
23191578 GCCTCTCCGGACGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGAATACAGAGTTCA
196 GCCTCTCCGGACGACTGAGCACCCGCACGCTCATTTCATGGGTTGACATAGGAATACAGAGTTCA
* *
23191643 TCCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGACTAG
261 TCCATAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGACTAG
23191708 GTCGG
326 GTCGG
* * * * * * *
23191713 GTCGATCCCC-AGCTTATGCATTCTGCCTCTCCGACTGGTCGAGCACCCACACGCTCATTTCGTG
1 GTCGATCCCCGA-CTTACGCATTCTGCCACTCCGACCGATCAAGCACCCACACACTCATTTCATG
*
23191777 GGTTGGCTTAGGCAAACGGAGTTCATTCCATGTCTAAGCCCTAGCTGGACCGAGGGTTGTGCCAG
65 GGTTGGCTTAGGCAAACAGAGTTCATTCCATGTCTAAGCCCTAGCTGGACCGAGGGTTGTGCCAG
* *
23191842 TAGGACTGGCAGCGGGATCGGCAGCATGCAGAGGGGGACCGGGCTGATCC-CTGACTTGCACATT
130 CAGGACTGGCAGCGGGATCGGCAGCATGCAGAGGGGGACCGGGCTGATCCTC-GACTTACACATT
* * * * * * * *
23191906 ATTCCTCTCC-TATCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCATATGCATACGGAGT
194 ATGCCTCTCCGGA-CGACTGAGCACCCGCACGCTCATTTCATGGGTTGACATAGGAATACAGAGT
* *
23191970 TTATTCCAT-GTCTAAGCATACGGAGTTGATTCCCAGTCTAAGAT
258 TCA-TCCATAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
23192014 TTTGAGCCAT
Statistics
Matches: 262, Mismatches: 35, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
329 3 0.01
330 255 0.97
331 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (330 bp):
GTCGATCCCCGACTTACGCATTCTGCCACTCCGACCGATCAAGCACCCACACACTCATTTCATGG
GTTGGCTTAGGCAAACAGAGTTCATTCCATGTCTAAGCCCTAGCTGGACCGAGGGTTGTGCCAGC
AGGACTGGCAGCGGGATCGGCAGCATGCAGAGGGGGACCGGGCTGATCCTCGACTTACACATTAT
GCCTCTCCGGACGACTGAGCACCCGCACGCTCATTTCATGGGTTGACATAGGAATACAGAGTTCA
TCCATAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGACTAG
GTCGG
Found at i:23191995 original size:26 final size:26
Alignment explanation
Indices: 23191959--23192011 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23191949 GTTGGCATAT
*
23191959 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTGATTCCCA-GTCTAA
23191985 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTGATTCCCAGTCTAA
23192011 G
1 G
23192012 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTGATTCCCAGTCTAA
Found at i:23192644 original size:26 final size:26
Alignment explanation
Indices: 23192614--23192667 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
23192604 GTTGACTTTG
*
23192614 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
23192640 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
23192666 GC
1 GC
23192668 TCAAACTGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.24
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23193158 original size:158 final size:158
Alignment explanation
Indices: 23192647--23193498 Score: 489
Period size: 158 Copynumber: 5.3 Consensus size: 158
23192637 TAAGCATACA
* * * *
23192647 GAGTTCATTCCCAGTCTAAGCTCAAACTGGATCGAGGGTTATGGCAGCAGGATCGGCAGCACACA
1 GAGTTCATTCCCAGTCTAAGCCCAAACCGGACCGAGGGTTATGGCAGCAGGATCGACAGCACACA
* * * * *
23192712 GGGGGGATCGGGCCGAACCCCAACTTGCGCATTCTGCGTCTCCGACCGGCTGAGCGCCCGCACGC
66 GGGGGGATCGGGCCGAACCCCGACTTACGTATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGC
* * **
23192777 -CTATTTTGTCAGTTGGCTTAGGCATAGG
131 TC-GTTTCGTGGGTTGGCTTAGGCATAGG
* * * * * * * *
23192805 GAGTTCATT-CCATGTC-AAGCCC-AGCCAGA-CAAGGGTTGTGGCATCGGGA-CTAGTAGCACA
1 GAGTTCATTCCCA-GTCTAAGCCCAAACCGGACCGAGGGTTATGGCAGCAGGATCGA-CAGCACA
* * * * * * *
23192865 CAGAGGGGGA-CTGAGCC-AATCCTCGACTTTC-TCATTATGCCTCTCCGACTGGGTCAACGCCC
64 CAG-GGGGGATC-GGGCCGAA-CCCCGACTTACGT-ATTCTGCCTCTCCGACTGGCTGAGCGCCC
* * *
23192927 GCACGCTTGTTTCGTGGGTTGACTTAGGCATA-T
125 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGG
* ** * * **
23192960 GAGGTTCATTCCCAGTCTTAGATCAAACCGGACCGAGGGTTACGACAGCAGGATCGACAGCATGC
1 GA-GTTCATTCCCAGTCTAAGCCCAAACCGGACCGAGGGTTATGGCAGCAGGATCGACAGCACAC
* * *
23193025 AGGGGGGATCGGGCCGAACCCCGACTTACGTATTCTGCCTCTTCGACTGGCTGAGCACCCGTACG
65 AGGGGGGATCGGGCCGAACCCCGACTTACGTATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACG
*
23193090 CTCGTTTCATGGGTTGGCTTAGGCATAGG
130 CTCGTTTCGTGGGTTGGCTTAGGCATAGG
* * * * * * * **
23193119 GAGTTCATT-CCATGTCTAAGCCCTAGCCGGACCGTGGGTTGTGGCAGCGGGACCTACAGCACGT
1 GAGTTCATTCCCA-GTCTAAGCCCAAACCGGACCGAGGGTTATGGCAGCAGGATCGACAGCACAC
* * * * * * * * *
23193183 AGAGGGGGACCGAGCC-AACACCCAACTTCCGTACTAC-GCCTCTCC-AGTCAGCTCAGCACCCG
65 AG-GGGGGATCGGGCCGAAC-CCCGACTTACGTA-TTCTGCCTCTCCGACT-GGCTGAGCGCCCG
* * ** *
23193245 CACGCTCATTTCTTTTGTTGAG-TTA-GCATACG
126 CACGCTCGTTTCGTGGGTTG-GCTTAGGCATAGG
** * * * *
23193277 GAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTACGACAGCAAGACCAGTAGTAGGAT
1 GAGTTCATTCCCAGTCTAAGCCCAAACCGGACCGAGGGTTATG---GC-AG--C------AGGAT
* *** * ** * ** * * *
23193342 CGACAGCACGCAGGGGGGA-CAGATACGATCCTTGGCTTGTGCATTCTACCTCTCCGGCTGGCTG
54 CGACAGCACACAGGGGGGATC-GGGCCGAACCCCGACTTACGTATTCTGCCTCTCCGACTGGCTG
* * * *
23193406 AGCTCCCACACGCTTGTTTCGTGGGTTGGCTTAGGCATACG
118 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGG
* *** *
23193447 AAGTTCATT-CCATGTCTAAGCCCTTGCCGGACCGAGGGTTGTGGCAGCAGGA
1 GAGTTCATTCCCA-GTCTAAGCCCAAACCGGACCGAGGGTTATGGCAGCAGGA
23193499 CCGGCAGCGG
Statistics
Matches: 517, Mismatches: 134, Indels: 86
0.70 0.18 0.12
Matches are distributed among these distances:
154 1 0.00
155 30 0.06
156 80 0.15
157 17 0.03
158 177 0.34
159 88 0.17
160 5 0.01
161 2 0.00
162 2 0.00
164 2 0.00
166 2 0.00
167 2 0.00
168 4 0.01
169 52 0.10
170 53 0.10
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGCCCAAACCGGACCGAGGGTTATGGCAGCAGGATCGACAGCACACA
GGGGGGATCGGGCCGAACCCCGACTTACGTATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATAGG
Found at i:23193660 original size:26 final size:26
Alignment explanation
Indices: 23193623--23193674 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23193613 GTTGACTTAG
*
23193623 GCATACGAAGTTCATCCCCAACCTAA
1 GCATACGAAGTTCATACCCAACCTAA
* *
23193649 GCATACGGAGTTCATACCCAATCTAA
1 GCATACGAAGTTCATACCCAACCTAA
23193675 AATTAGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.35, C:0.31, G:0.13, T:0.21
Consensus pattern (26 bp):
GCATACGAAGTTCATACCCAACCTAA
Found at i:23193964 original size:159 final size:160
Alignment explanation
Indices: 23193771--23194152 Score: 416
Period size: 159 Copynumber: 2.4 Consensus size: 160
23193761 CTGGCTGACT
* * * *
23193771 AAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
1 AAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAC
** ** **
23193836 CAG-CC-AGACCAAGGGTTGTGGCAAC-GGCA-CTAGTAGCACGCAGAGCGGGACCGGGTCGATC
66 CAGACCGA-ACCAAGGGTTGCAGCAACAGG-ATC-AACAAAACGCAGAGCGGGACCGGGTCGATC
* ** *
23193897 CCCGATTTGTGCATTATGCCTCTTCGGTCGGCA
128 CCCGACTTGCACATTATGCCTCTCCGGTCGGCA
* * * ** *
23193930 CAGTGCCCGCACGCTCGTTTCTTGGGTTAACTTAGGCATACGGAGTTCATTCC-TAGTCTTAG-A
1 AAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCA
* * * * * *
23193993 TCAGACCGAACCGAGGGTTGCAGCAGCAGGATCAACAAAATGCAGAGGGGGACCGGGTCGATCCT
65 CCAGACCGAACCAAGGGTTGCAGCAACAGGATCAACAAAACGCAGAGCGGGACCGGGTCGATCCC
* *
23194058 CGGCTTGCACATTTTGCCTCTCCGGTCGGCA
130 CGACTTGCACATTATGCCTCTCCGGTCGGCA
* *
23194089 AAGCGCCCGCATGCTCGTTTCGTGGGTTGGCCTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 AAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
23194153 TACGGAGTTC
Statistics
Matches: 180, Mismatches: 36, Indels: 13
0.79 0.16 0.06
Matches are distributed among these distances:
158 4 0.02
159 170 0.94
160 6 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (160 bp):
AAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAC
CAGACCGAACCAAGGGTTGCAGCAACAGGATCAACAAAACGCAGAGCGGGACCGGGTCGATCCCC
GACTTGCACATTATGCCTCTCCGGTCGGCA
Found at i:23194153 original size:26 final size:26
Alignment explanation
Indices: 23194124--23194176 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23194114 GTTGGCCTAG
23194124 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23194150 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23194176 G
1 G
23194177 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23195345 original size:158 final size:157
Alignment explanation
Indices: 23194880--23195361 Score: 454
Period size: 159 Copynumber: 3.0 Consensus size: 157
23194870 TTCATTCCCA
* * * * ** *
23194880 GTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGTAGGATCGGTAGCACGGAGGGGGGA-TCGGG
1 GTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACT-GGG
* * * * *
23194944 TCGATCCCCTGCTT-GCACATTCTACCTCTCCGGCCTGCTGAGCGCCCGTACGC-CTGTTTCTTG
65 TCGATCCCCAGCTTGGCA-ATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTC-GTTTCATG
*
23195007 GGTTGGCTTAGGCATAGGGAGTTCATTCCAT
128 GGTTGGCTTAGGCATACGGAGTTCATT-CAT
**** * * * * * *
23195038 GTCTAAG-CCCCAGCCAGATCGAGAGATGTGGTAGCGGGATCGACAGCACGCAGAGGGGGACCGG
1 GTCTAAGATTGGA-CCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGACTGG
* * * * * * ** * * * *
23195102 GTCAATCCTCGGTTTGTGC-ATTATGCCTCTCCGACTGGCTCAGCACCCTCACGCTCGTTTCGTG
64 GTCGATCCCCAGCTTG-GCAATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCGTTTCATG
* *
23195166 GGTTGACTTAGGCATATGGAGTTCATTCAT
128 GGTTGGCTTAGGCATACGGAGTTCATTCAT
* *
23195196 AGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCTACAGCACGTAGGGGGGACTGGG
1 -GTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACTGGG
*
23195261 -CTGATCCCCAGCTTGGCAATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCATTTCATGG
65 TC-GATCCCCAGCTTGGCAATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGG
* *
23195325 GTTGGCTTAGGCAAACGGAGTTCAATCCAT
129 GTTGGCTTAGGCATACGGAGTTC-ATTCAT
23195355 GTCTAAG
1 GTCTAAG
23195362 CATACGAAGT
Statistics
Matches: 251, Mismatches: 62, Indels: 22
0.75 0.19 0.07
Matches are distributed among these distances:
157 4 0.02
158 121 0.48
159 122 0.49
160 2 0.01
161 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACTGGGT
CGATCCCCAGCTTGGCAATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGT
TGGCTTAGGCATACGGAGTTCATTCAT
Found at i:23195507 original size:184 final size:182
Alignment explanation
Indices: 23195185--23195741 Score: 584
Period size: 184 Copynumber: 3.0 Consensus size: 182
23195175 AGGCATATGG
** * * * *
23195185 AGTTCATTCATAGTCTAAGAT-TGGACCAGACCGAGGGTTGTGGCAGCAGGATCTACAGCACGTA
1 AGTTCATTCCCAGTCTAAGATCAGG-CCAGACTGAGGGTTGTGGCAACAGGATCGACAGCACGTA
* * * *
23195249 GGGGGGACTGGG-CTGATCC-CCAGCTT-GGCAATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCA
65 GGGGGGAC-GGGTC-GATCCTCGA-CTTACG-AATTCTGCCTCTCCGGCCGGCTGAGCGCCCACA
** * *
23195311 CGCTCATTTCATGGGTTGGCTTAGGCAAACGGAGTTCAATCCATGTCTAAGCATACGA
126 CG-TTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGA
* *
23195369 AGTTCATTCCCAGTCTAAGATCAGGCCAGACTGACGGTTGTGGCAACAGGATCGACAGTACGTAG
1 AGTTCATTCCCAGTCTAAGATCAGGCCAGACTGAGGGTTGTGGCAACAGGATCGACAGCACGTAG
* * * *
23195434 GGGGGATCGGGTCGATCCTCGACTTACGTATTCTACCTCTCCGGCCGGCTGAGTGCCTACACTGT
66 GGGGGA-CGGGTCGATCCTCGACTTACGAATTCTGCCTCTCCGGCCGGCTGAGCGCCCACAC-GT
*
23195499 TGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGG
129 TGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGA
* * *
23195553 AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGTAGCTAGACCAGTAGCGGGATC
1 AGTTCATTCCCAGTCTAAGATCAGGCCAGACTGAGGGTT---GT-G---G--CA--A-CAGGATC
* * * * * ** *
23195618 GACAACACGT-TGGGGGACCGAGTCGATCCTCGGCTTACGCATTCTGCCTCTCCAACCGGCTTAG
54 GACAGCACGTAGGGGGGA-CGGGTCGATCCTCGACTTACGAATTCTGCCTCTCCGGCCGGCTGAG
*
23195682 CGCCCACACCCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
118 CGCCCACA-CGTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
23195742 CCCAGTCAGA
Statistics
Matches: 315, Mismatches: 39, Indels: 27
0.83 0.10 0.07
Matches are distributed among these distances:
184 185 0.59
185 8 0.03
187 2 0.01
188 1 0.00
191 1 0.00
193 2 0.01
195 101 0.32
196 15 0.05
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (182 bp):
AGTTCATTCCCAGTCTAAGATCAGGCCAGACTGAGGGTTGTGGCAACAGGATCGACAGCACGTAG
GGGGGACGGGTCGATCCTCGACTTACGAATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGTTG
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGA
Found at i:23195549 original size:26 final size:26
Alignment explanation
Indices: 23195519--23195571 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23195509 GTTGGCTTAG
23195519 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23195545 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23195571 G
1 G
23195572 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23195934 original size:26 final size:26
Alignment explanation
Indices: 23195898--23195947 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
23195888 GTTGACTTAG
23195898 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23195924 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
23195948 TAGATCAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23196423 original size:157 final size:156
Alignment explanation
Indices: 23195924--23196414 Score: 477
Period size: 157 Copynumber: 3.1 Consensus size: 156
23195914 CCCAGTCTAA
* * * **
23195924 GCATACGGAGTTCATTCCCAGTCTTAGATCAGACTGGATCGAGGGTTACGGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGATA
* * * **
23195989 GCACGCGGGGGGGA-TGGGTCGATCCTTGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAATGCC
66 GCACGCAGGGGGGACT-GGTCGATCCTT-GCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
* *
23196053 CGCACGCCCGTTTCGTGGGTTGGTTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * **
23196081 GTATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGCGGGATCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGA
* * * * * * * *
23196144 TAGCATGCAGAGGGGGATCGGGTCGAT-CTTCGGTATGCGTATTATGCCTCTTCGATCAGCTTAG
64 TAGCACGCAG-GGGGGA-CTGGTCGATCCTT-GCT-TGCGCATTCTGCCTCTCCGATCGGCTGAG
* * * * *
23196208 CACCCGCACGCTCATTTTGTGGGTTGACTTAT
125 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
23196240 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGATA
* * ** * * *
23196305 GCCCACAGGGGGGACTGACCGATCCTTGACTTGTGCATTCTGCCTCTCCGACCGGCAGAGCGCCC
66 GCACGCAGGGGGGACTGGTCGATCCTTG-CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
* *
23196370 GCGCTCTCGTTTCGTGGGTTGGCTTAG
130 GCACGCTCGTTTCGTGGGTTGGCTTAG
*
23196397 GCATACGGAGTTAATTCC
1 GCATACGGAGTTCATTCC
23196415 ATGCCTAAGC
Statistics
Matches: 258, Mismatches: 66, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
156 3 0.01
157 120 0.47
158 27 0.10
159 105 0.41
160 3 0.01
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.25
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGATA
GCACGCAGGGGGGACTGGTCGATCCTTGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:23197146 original size:26 final size:26
Alignment explanation
Indices: 23197117--23197169 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23197107 GTTGACTTAG
23197117 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
23197143 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
23197169 G
1 G
23197170 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:23198337 original size:316 final size:317
Alignment explanation
Indices: 23197778--23198473 Score: 765
Period size: 316 Copynumber: 2.2 Consensus size: 317
23197768 GTGCCCGTAT
* * * *
23197778 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA-ATCGAACCG
1 GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCT-GGACCG
* * * *
23197842 AGGGTTGTCGTAGCAGGACCAACAACGGGATCGACAGCACGTAGAGAGGGATCAGGCTGATCCTC
65 GGGGTTGT-G--GCA-G--------CGGGACCGGCAACACGTAGAGAGGGATCAGGCTGATCCTC
* * *
23197907 GGCTTGTGCATTATGACTCTCCAGCTGGCTGAGCACCCACACGCTCGTTTCGAGGGTTGACTTAG
118 GGCTTGCGCATTATGACTCTCCAGCTGGCTCAGCACCCACACGCTCATTTCGAGGGTTGACTTAG
* * * *
23197972 GCACACGGAGTTCATCCCCACTCTAAGATCGGATCGGACTGAGGGTTGCGATAGTAGGATCGACA
183 GCACACGAAATTCATCCCCACTCTAAGATCGGATCGGACAGAGGGTTGCGATAGCAGGATCGACA
* * * * *
23198037 GCACGTA-G-GGGGACCAAGCCGATCC-CTGGCTTGCGTATTCTGCCTCTCCGGCCTG-CTAAGC
248 GCACGCAGGAGGGGA-CAAGCCGATCCTC-GACTTACGCATTCTGCCTCTCCGACC-GACTAAGC
*
23198098 ACCTGCAT
310 ACCTGCAC
* * * *
23198106 GCTCATTTTGTGTGTTGGCTTAGGCATAGGGAGTTCGTTCCATGTCTAAGCCCCAGCTGGACCGG
1 GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGG
*
23198171 GGGTTGTGGCAGCGGGACCGGCAACACGTAGAGAGGGATCGAGTC-GATCCTCGGCTTGCGCATT
66 GGGTTGTGGCAGCGGGACCGGCAACACGTAGAGAGGGATC-AGGCTGATCCTCGGCTTGCGCATT
* * * * * ** * * * * * * *
23198235 ATGCCTCTTCGGTTGGTTCAGTGCGCGCGCGCTCATTTTGTGGGTTGACTTATGCATACGAAATT
130 ATGACTCTCCAGCTGGCTCAGCACCCACACGCTCATTTCGAGGGTTGACTTAGGCACACGAAATT
* * *
23198300 CATTCCCAGTCTAAGATCGGATCGGACAGAGGGTTGCGATAGCAGGATCGACAGCATGCAGGAGG
195 CATCCCCACTCTAAGATCGGATCGGACAGAGGGTTGCGATAGCAGGATCGACAGCACGCAGGAGG
** * *
23198365 GGACTGGGCGATCCTCGACTTACGCATTCTGCCTCTCCGACCGACTAAGCACCTGTAC
260 GGACAAGCCGATCCTCGACTTACGCATTCTGCCTCTCCGACCGACTAAGCACCTGCAC
*
23198423 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
23198474 ATACGGAGTT
Statistics
Matches: 310, Mismatches: 52, Indels: 23
0.81 0.14 0.06
Matches are distributed among these distances:
316 145 0.47
317 92 0.30
318 6 0.02
324 1 0.00
325 3 0.01
327 1 0.00
328 61 0.20
329 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (317 bp):
GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGG
GGGTTGTGGCAGCGGGACCGGCAACACGTAGAGAGGGATCAGGCTGATCCTCGGCTTGCGCATTA
TGACTCTCCAGCTGGCTCAGCACCCACACGCTCATTTCGAGGGTTGACTTAGGCACACGAAATTC
ATCCCCACTCTAAGATCGGATCGGACAGAGGGTTGCGATAGCAGGATCGACAGCACGCAGGAGGG
GACAAGCCGATCCTCGACTTACGCATTCTGCCTCTCCGACCGACTAAGCACCTGCAC
Found at i:23198475 original size:26 final size:26
Alignment explanation
Indices: 23198446--23198498 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
23198436 GTTGGCTTAG
23198446 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
23198472 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
23198498 G
1 G
23198499 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Done.