Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 229 of 402
Found at i:23198702 original size:842 final size:851
Alignment explanation
Indices: 23197169--23199366 Score: 2215
Period size: 869 Copynumber: 2.6 Consensus size: 851
23197159 CCCATTCTAA
* * * * * ** *
23197169 GATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGGGGGACCGGGTCGATCC
1 GATCAGACCGGACTGAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGACCAAGCCGATCC
* * * * ** *
23197234 C-CAGCTTGCGTATTCTACCTCTCCGACCGACTGAGCACCCGCGTGCCCATTTCGTGGGTTGGCT
66 CTGA-CTTGCGTATTCTGCCTCTCCGACCGGCTAAGCACCCGCACGCCCATTTCGTGGGTTGGAT
* * * *
23197298 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACAGAGGGTTGTGGCAGAGGG---G
130 TAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCG
* * ** * **
23197360 G----A--C----GTGG-CCGA-TC---CCT-AGCAAACGAATTATGCCTC-TCCAGTCCGCTCA
195 GCAACACTCAGAGGTGGACCGAGCCAATCCTCGGCTTACGCATTATGCCTCTTCC-GTTGGCTCA
** * * * * * *
23197408 ACGCCTGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGATTGG
259 GTGCCCGCACGCTCATTTTGTGGGTTGACTTATGCATACGAAGTTCATTCCTAGTCTAAGATCGG
* * * * * *
23197473 ATCGGACTGAGGGTTGC-AGTAGCAGGATCGATAGCACGTAAAGGA-GGGTCAGGTCGGTCCCCG
324 ATCGGACAGAGGGTTGCGA-TAGCAGGATCGATAGCA--TGAAGGAGGGGACTGGGCGAT-CCCG
* * * * *
23197536 ACTTGCACATTTTGCCTCTCCGATCGGTTGAGCGCCCGCT-CCCTCGTTTCGTGGGTTGGCTTAG
385 ACTTGCACATTCTGCCTCTCCGACCGGCT-A-AGCCCG-TACACTCGTTTCGTGGGTTGGCTTAG
* * * *
23197600 GTATACGGAGTTTATTCCATATCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCAGATCAGAC
447 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCA-TTCCAGTCTAAGATCAGATCAGAA
* * *
23197665 TGAGGGTTGCGATAGCAGGACTAACAACAGGATCGACAGCAGGACCAGTAGGGGGGACCGGGCTA
511 TGAGGGTTGCGACAGCAGGACCAACAACAGGATCGACAGCAGGA-CAG-AGGGGGGACCGGGCGA
* * * * **
23197730 GTCCCCGGCTTGCGTATTCTGCCTCTCTGGCCGATTGAGTGCCCGTATGCTCGTTTCATGGGTTG
574 GTCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACACTCGTTTCATGGGTTG
23197795 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGAACCGAGGGTTGTCGTAGCAGGA
639 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGAACCGAGGGTTGTCGTAGCAGGA
* * **
23197860 CCAACAACGGGATCGACAGCACGTAGAGAGGGA-TCAGGCTGATCCTCGGCTTGTGCATTATGA-
704 CCAACAACGGGATCGACAGCACGTAGAGAGGGACT-AGGCCGATCCCCGGCTTACGCATTAT-AC
* * *
23197923 CTCTCCAG-CTGGCTGAGCACCCACACGCTCGTTTCGA-GGGTTGACTTAGGCACACGGAGTTCA
767 CTCTCCAGTCAGG-TGAGCACCCACAAGCTCATTTC-ATGGGTTGACTTAGGCACACGGAGTTCA
23197986 T-C-C-C-C-A-C-T-CTA-A-
830 TCCTCACACAATCATCCTATAG
* * * *
23197998 GATCGGATCGGACTGAGGGTTGCGATAGTAGGATCGACAGCACGTA-GGGGGACCAAGCCGATCC
1 GATCAGACCGGACTGAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGACCAAGCCGATCC
* * * * * * * * *
23198062 CTGGCTTGCGTATTCTGCCTCTCCGGCCTGCTAAGCACCTGCATGCTCATTTTGTGTGTTGGCTT
66 CTGACTTGCGTATTCTGCCTCTCCGACCGGCTAAGCACCCGCACGCCCATTTCGTGGGTTGGATT
* * *
23198127 AGGCATAGGGAGTTCGTTCCATGTCTAAGCCCCAG-CTGGACCGGGGGTTGTGGCAGCGGGACCG
131 AGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCGAGGGTTGTGGCAGCGGGACCG
* * * * * *
23198191 GCAACACGT-AGAGAG-GGATCGAGTCGATCCTCGGCTTGCGCATTATGCCTCTTCGGTTGGTTC
195 GCAACAC-TCAGAG-GTGGACCGAGCCAATCCTCGGCTTACGCATTATGCCTCTTCCGTTGGCTC
* * * *
23198254 AGTGCGCGCGCGCTCATTTTGTGGGTTGACTTATGCATACGAAATTCATTCCCAGTCTAAGATCG
258 AGTGCCCGCACGCTCATTTTGTGGGTTGACTTATGCATACGAAGTTCATTCCTAGTCTAAGATCG
* *
23198319 GATCGGACAGAGGGTTGCGATAGCAGGATCGACAGCATGCAGGAGGGGACTGGGCGATCCTCGAC
323 GATCGGACAGAGGGTTGCGATAGCAGGATCGATAGCATGAAGGAGGGGACTGGGCGATCC-CGAC
* * * *
23198384 TTACGCATTCTGCCTCTCCGACCGACTAAGCACCTGTACGCTCGTTTCGTGGGTTGGCTTAGGCA
387 TTGCACATTCTGCCTCTCCGACCGGCTAAGC-CC-GTACACTCGTTTCGTGGGTTGGCTTAGGCA
*
23198449 TACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCATGTCTAAGATCAGA-CCGAATCG
450 TACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCA-GTCTAAGATCAGATCAGAAT-G
* * * * *
23198513 AGGGTTGCGGCAGCAGGACCAACAGCAGGATCGGCAGCATG-CA-AGGGGGGACGGGGTCGA-TC
513 AGGGTTGCGACAGCAGGACCAACAACAGGATCGACAGCAGGACAGAGGGGGGACCGGG-CGAGTC
* * * *
23198575 CCCGGCTTGCGCATTTTGCCTCT-TCGGTCGGCTGAGCGCTCGCACACTCGTTTCATGGGTTGGC
577 CCCGGCTTGCGCATTCTGCCTCTCT-GGCCGACTGAGCGCCCGCACACTCGTTTCATGGGTTGGC
* * * * *
23198639 TTAGGCATACGGAGTTCATTCCATGTTTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACT
641 TTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGAACCGAGGGTTGTCGTAGCAGGACC
*** * * * *
23198704 GGTAGCGGGATCGACAGCACGTAGAGGGGGACTGGGCCGATCCCCGGCTTACGCATTCTACCTCT
706 AACAACGGGATCGACAGCACGTAGAGAGGGACTAGGCCGATCCCCGGCTTACGCATTATACCTCT
* * ** * *
23198769 TCGGTCAGGTGAGTGCCCGCAAGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCTTG
771 CCAGTCAGGTGAGCACCCACAAGCTCATTTCATGGGTTGACTTAGGCACACGGAGTTCATCC---
23198834 GTCTAAGCATACAGAGTTCATTCCTAGTCTAG
833 -TC--A-C--ACA-A--TCA-TCCTA---TAG
** *
23198866 GATCAGACCGGACTGAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCT
1 GATCAGACCGGACTGAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGACCAAGCCGATCC
* * ** *
23198931 CTGACTTGCGTATTCTGCCTCTCCGACCGGTTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGATT
66 CTGACTTGCGTATTCTGCCTCTCCGACCGGCTAAGCACCCGCACGCCCATTTCGTGGGTTGGATT
* * *
23198996 AGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTTTGGCAGCGGGATCGG
131 AGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGG
* *
23199061 CAGCACTCAGAGGTGGACCGAGCCAATCCTCGGCTTACGCATTATGCTTCTTCCGTTGGCTCAGT
196 CAACACTCAGAGGTGGACCGAGCCAATCCTCGGCTTACGCATTATGCCTCTTCCGTTGGCTCAGT
* * * * *
23199126 GCCCGCACGCTCATTTCGTGGGTAGACTTATGCATACGCAGTTCATTCCTAGTCTAAGATCAGAC
261 GCCCGCACGCTCATTTTGTGGGTTGACTTATGCATACGAAGTTCATTCCTAGTCTAAGATCGGAT
* * * ** * * *
23199191 CAGACCGAGGGTTGTGGCAGCAGGATCGATGGCACGTAAGG-GGGGACTGGGTCGATCCCCAGCT
326 CGGACAGAGGGTTGCGATAGCAGGATCGATAGCATG-AAGGAGGGGACTGGG-CGATCCCGA-CT
* * * *
23199255 TGCACATTCTGGCTCTCCGACCGGCTGAACGCCCGCACACTCGTTTCATGAGTTGGCTTAGGCAT
388 TGCACATTCTGCCTCTCCGACCGGCT-AA-GCCCGTACACTCGTTTCGTGGGTTGGCTTAGGCAT
* *
23199320 ACGAAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCCAGTCTA
451 ACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT-CCAGTCTA
23199367 GGATTTTGAG
Statistics
Matches: 1119, Mismatches: 176, Indels: 107
0.80 0.13 0.08
Matches are distributed among these distances:
827 1 0.00
828 121 0.11
829 39 0.03
831 2 0.00
835 1 0.00
841 5 0.00
842 225 0.20
843 9 0.01
844 4 0.00
845 20 0.02
846 147 0.13
847 105 0.09
848 4 0.00
852 1 0.00
855 1 0.00
857 1 0.00
860 1 0.00
862 1 0.00
863 3 0.00
867 1 0.00
868 44 0.04
869 272 0.24
870 102 0.09
871 7 0.01
872 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (851 bp):
GATCAGACCGGACTGAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGACCAAGCCGATCC
CTGACTTGCGTATTCTGCCTCTCCGACCGGCTAAGCACCCGCACGCCCATTTCGTGGGTTGGATT
AGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGG
CAACACTCAGAGGTGGACCGAGCCAATCCTCGGCTTACGCATTATGCCTCTTCCGTTGGCTCAGT
GCCCGCACGCTCATTTTGTGGGTTGACTTATGCATACGAAGTTCATTCCTAGTCTAAGATCGGAT
CGGACAGAGGGTTGCGATAGCAGGATCGATAGCATGAAGGAGGGGACTGGGCGATCCCGACTTGC
ACATTCTGCCTCTCCGACCGGCTAAGCCCGTACACTCGTTTCGTGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCAGATCAGAATGAGGGTTGC
GACAGCAGGACCAACAACAGGATCGACAGCAGGACAGAGGGGGGACCGGGCGAGTCCCCGGCTTG
CGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCCCCAATCGAACCGAGGGTTGTCGTAGCAGGACCAACAACGGGA
TCGACAGCACGTAGAGAGGGACTAGGCCGATCCCCGGCTTACGCATTATACCTCTCCAGTCAGGT
GAGCACCCACAAGCTCATTTCATGGGTTGACTTAGGCACACGGAGTTCATCCTCACACAATCATC
CTATAG
Found at i:23198863 original size:26 final size:26
Alignment explanation
Indices: 23198814--23198864 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
23198804 GTTGACTTAG
* *
23198814 GCATACGGAGTTCATCCTTGGTCTAA
1 GCATACAGAGTTCATCCTTAGTCTAA
23198840 GCATACAGAGTTCATTCC-TAGTCTA
1 GCATACAGAGTTCA-TCCTTAGTCTA
23198865 GGATCAGACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATCCTTAGTCTAA
Found at i:23200551 original size:170 final size:170
Alignment explanation
Indices: 23200269--23200576 Score: 465
Period size: 170 Copynumber: 1.8 Consensus size: 170
23200259 CGATGGTTCT
* * * * *
23200269 GGCAGTGGGATCGACAGCACGCAGTGGGGGACTGGGCTGATCCTCGGCTTGCGCATTATGCCTCT
1 GGCAGTGGGATCGACAGCACACAGAGGGGGACCGGACTGATCCTCGGCTTGCACATTATGCCTCT
* * * * * *
23200334 CCGGCCGGCTGAGCGGCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCAGACGGAGTTCAT-TCCA
66 CCGGCCGGCTGAGAGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAGACGGAGTTCATCCCCA
23200398 TGTCTAAGCCCAGTCGGATCGAGGGTTGTGGTAGCAAGACC
131 -GTCTAAGCCCAGTCGGATCGAGGGTTGTGGTAGCAAGACC
* *
23200439 GGCAGTGGGATCGACTGCACACAGAGGGGGACCGGATTGATCCTCGGCTTGCACATTATGCCTCT
1 GGCAGTGGGATCGACAGCACACAGAGGGGGACCGGACTGATCCTCGGCTTGCACATTATGCCTCT
* *
23200504 CCGGTCGGCTGAGAGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA
66 CCGGCCGGCTGAGAGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAGACGGAGTTCATCCCCA
23200569 GTCTAAGC
131 GTCTAAGC
23200577 ATACAGAGTT
Statistics
Matches: 122, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
170 119 0.98
171 3 0.02
ACGTcount: A:0.17, C:0.27, G:0.33, T:0.22
Consensus pattern (170 bp):
GGCAGTGGGATCGACAGCACACAGAGGGGGACCGGACTGATCCTCGGCTTGCACATTATGCCTCT
CCGGCCGGCTGAGAGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAGACGGAGTTCATCCCCA
GTCTAAGCCCAGTCGGATCGAGGGTTGTGGTAGCAAGACC
Found at i:23200585 original size:26 final size:26
Alignment explanation
Indices: 23200549--23200601 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23200539 GTTGACTTAG
*
23200549 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
23200575 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
23200601 G
1 G
23200602 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23200938 original size:159 final size:157
Alignment explanation
Indices: 23200575--23200930 Score: 363
Period size: 159 Copynumber: 2.2 Consensus size: 157
23200565 CCCAGTCTAA
* * * *
23200575 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAACAGGATCGGCA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAACAGGACCGGCA
* * * * * * *
23200640 GCACGCAAGGGGGACCGAGCCAATCCCCGACTTATACATTCTGCCTCTTCGGTTGGCTGAGCACC
65 GCACGCAAGGGGGACAGAGCCAATCCCCGACTTACACATTATGCCTCTTCGGCTAGCTCAACACC
**
23200705 CGCACGCCCGTTTCGTGGGCTGGCTTAG
130 CGCACGCCCGTTTCGTGGGCTAACTTAG
* ** * * * * * *
23200733 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGGGACCGGTA
1 GCATACGGAGTTCATTCCA-GTCTAAGATCAAACCAGACCGAGGGTTGCGGCAACAGGACCGGCA
* ** * * * *
23200798 GCACGCAGAGGGGGAACAG-GCCGATCCTTGATTTGCGCATTATGCCTCTTCGGCTAGCTCAACG
65 GCACGCA-AGGGGG-ACAGAGCCAATCCCCGACTTACACATTATGCCTCTTCGGCTAGCTCAACA
* * * *
23200862 CCCGGACGCTCGTTTCGTGGGTTAACTTAT
128 CCCGCACGCCCGTTTCGTGGGCTAACTTAG
23200892 GCATACGGAGTTCATTCCTAGTCTAAGATCAAACCAGAC
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAAACCAGAC
23200931 TAAGGGTTAT
Statistics
Matches: 156, Mismatches: 38, Indels: 7
0.78 0.19 0.03
Matches are distributed among these distances:
157 3 0.02
158 55 0.35
159 94 0.60
160 4 0.03
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAACAGGACCGGCAG
CACGCAAGGGGGACAGAGCCAATCCCCGACTTACACATTATGCCTCTTCGGCTAGCTCAACACCC
GCACGCCCGTTTCGTGGGCTAACTTAG
Found at i:23202196 original size:159 final size:159
Alignment explanation
Indices: 23201812--23202235 Score: 439
Period size: 159 Copynumber: 2.7 Consensus size: 159
23201802 GCATATGAAA
* * * * *
23201812 TTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGTATCAGGATCG-CAGCACGCAGGG
1 TTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAACAGGATCGACAGCACGCAGGG
* * * * *
23201876 GGGACCGAGCCGATCCCCGGCTTGCG-ATTCTGCCTCTCCGA-TCGGTTGAGTGCCCGCACGCCC
66 GGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTACGACTCGGCTCAGTGCCCACACGCCC
* **
23201939 GTTTCATGGGTTGGCTTAGGCATAGGGAG
131 GTTTCATGGGTTGACTTAGGCATACAGAG
** * * * * *
23201968 TTCATT-CCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGCAGCAGGA-CCAGCAGCACGCA
1 TTCATTCCCA-GTCTAAG-ATCAGATCAGACCGAGGGTTGCGGCAACAGGATCGA-CAGCACGC-
** * * * *
23202030 AAAGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGACT-GGCTCAGTGCCCACAC
62 AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTACGACTCGGCTCAGTGCCCACAC
* * *
23202094 GCTCGTTTCGTGGGTTGACTTATGCATACAGAG
127 GCCCGTTTCATGGGTTGACTTAGGCATACAGAG
* * * *
23202127 TTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAACAAGATCGACAGCAAGTAGGG
1 TTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAACAGGATCGACAGCACGCA-GG
* *
23202192 GGGGACCAGGCCAATCCCCGGCTTGCGCATTCTGCCTCTACGAC
65 GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTACGAC
23202236 CTGCTGGTAC
Statistics
Matches: 211, Mismatches: 46, Indels: 19
0.76 0.17 0.07
Matches are distributed among these distances:
155 3 0.01
156 32 0.15
157 11 0.05
158 28 0.13
159 131 0.62
160 6 0.03
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (159 bp):
TTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAACAGGATCGACAGCACGCAGGG
GGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTACGACTCGGCTCAGTGCCCACACGCCC
GTTTCATGGGTTGACTTAGGCATACAGAG
Found at i:23203110 original size:158 final size:155
Alignment explanation
Indices: 23202825--23203165 Score: 425
Period size: 158 Copynumber: 2.2 Consensus size: 155
23202815 CAGTCTAAGT
* * * *
23202825 ATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGAGTGATAGTAGGATCGGTAGCACG
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTGATAGTAGGATCGATAGCACG
* * * * * * * **
23202890 TAGGGGGGATCGGGCTGATCCCCGACTTGTGCATTATGCTTCTTCGGCTGGCTCAGTGCCCGCAC
66 CAGGGGGGATAGGGCTGATCCCCGACTTGTGCATTATACCTCTCCGACCGGCTCAGCACCCGCAC
23202955 GCTCATTTCATGGGTTGACTTAGGC
131 GCTCATTTCATGGGTTGACTTAGGC
* * *
23202980 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGTAGGATCGATAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGAG-T--GATAGTAGGATCGATAGC
* * * * *
23203045 ACGCAGGGGGGACTAGGTC-GGTCCCCGGCTTGTGCATTCTACCTCTCCGACCGGCTGAGCACCC
63 ACGCAGGGGGGA-TAGGGCTGATCCCCGACTTGTGCATTATACCTCTCCGACCGGCTCAGCACCC
* *
23203109 GCACGCTCATTTCGTGGGTTGCCTTAGGC
127 GCACGCTCATTTCATGGGTTGACTTAGGC
23203138 ATAC-GAGTTCATTCCCAGTCTAAGATCA
1 ATACGGAGTTCATTCCCAGTCTAAGATCA
23203166 TATTGGACTG
Statistics
Matches: 158, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
155 38 0.24
156 1 0.01
157 23 0.15
158 92 0.58
159 4 0.03
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (155 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTGATAGTAGGATCGATAGCACG
CAGGGGGGATAGGGCTGATCCCCGACTTGTGCATTATACCTCTCCGACCGGCTCAGCACCCGCAC
GCTCATTTCATGGGTTGACTTAGGC
Found at i:23203820 original size:26 final size:26
Alignment explanation
Indices: 23203791--23203843 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23203781 GTTGGCTTAG
* *
23203791 GCATATGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAATTCATTTCCA-GTCTAA
23203817 GCATACGGAATTCATTTCCAGTCTAA
1 GCATACGGAATTCATTTCCAGTCTAA
23203843 G
1 G
23203844 ATTAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAATTCATTTCCAGTCTAA
Found at i:23204207 original size:26 final size:26
Alignment explanation
Indices: 23204170--23204222 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23204160 GTTGACTTAG
*
23204170 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
23204196 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
23204222 G
1 G
23204223 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:23205311 original size:26 final size:26
Alignment explanation
Indices: 23205273--23205328 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
23205263 TGGGTTGACT
23205273 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* * * *
23205299 TAAGCGTATGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
23205325 TAAG
1 TAAG
23205329 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:23205600 original size:159 final size:156
Alignment explanation
Indices: 23205405--23205800 Score: 384
Period size: 157 Copynumber: 2.5 Consensus size: 156
23205395 TTGCACATTC
* * * * *
23205405 TGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTC
1 TGCCTCTTCGGTCGGCTAAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTC
* * * ** * * *
23205470 ATTCCATGTCTAAGCCCTAGTCGGACTGAGGGTTGTTGCAGCGGGACCGACAGCATGCAGAGGAG
66 ATTCCATGTCTAAGCCCGA-CCGGACTGAAGGTTGCGGCAGC-AGACCAACAGCACGCA-AGGAG
* * **
23205535 GACCGGGCCAATTCTTGGCTTACGTATTA
128 GACCGAGCCAATCCGCGGCTTACGTATTA
* * * * * * *
23205564 TGCCTCTTCGGTCGACTCAGCGCCTGCTA-GCTCATTTCATGGGTTGACATATGCGTACAGAGTT
1 TGCCTCTTCGGTCGGCTAAGCGCCTGC-ACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTT
* * * * * *
23205628 AATTCCCA-GTCTAAGATCCGACCGGTCTGAAGGTTGCGGCAGCAGATCAACAGCACGTAAGGGG
65 CATT-CCATGTCTAAG-CCCGACCGGACTGAAGGTTGCGGCAGCAGACCAACAGCACGCAAGGAG
* *
23205692 GACCGAGCCAATCCGCGGCTTGCGTATTC
128 GACCGAGCCAATCCGCGGCTTACGTATTA
* * * *
23205721 TGCCTC-TCTGTCTGGCTAAGCACTTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
1 TGCCTCTTCGGTC-GGCTAAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTT
23205785 CATTCCATGTCTAAGC
65 CATTCCATGTCTAAGC
23205801 ATATGGAGTT
Statistics
Matches: 187, Mismatches: 44, Indels: 15
0.76 0.18 0.06
Matches are distributed among these distances:
156 9 0.05
157 82 0.44
158 11 0.06
159 78 0.42
160 7 0.04
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.26
Consensus pattern (156 bp):
TGCCTCTTCGGTCGGCTAAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCCCGACCGGACTGAAGGTTGCGGCAGCAGACCAACAGCACGCAAGGAGGAC
CGAGCCAATCCGCGGCTTACGTATTA
Found at i:23205784 original size:157 final size:154
Alignment explanation
Indices: 23205308--23205799 Score: 454
Period size: 159 Copynumber: 3.1 Consensus size: 154
23205298 CTAAGCGTAT
* *
23205308 GGAGTTCATTCC-TAGTCTAAGATCAGATCGGACCGAAGGTTGCAGCAG-GATCGACAGCACGCA
1 GGAGTTCATTCCAT-GTCTAAGATCCGATCGGACTGAAGGTTGCAGCAGCGATCGACAGCACGCA
* * * ** * *
23205371 TGGGGGACTGGGCCGATCTCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGC
65 AGGGGGACCGGGCCAATC-CCGGCTTGCGTATTCTGCCTCT-CGGTCGGCTAAGCGCCTGCACGC
* *
23205436 CCATTTCATGGGTTGGCTTAGGCATAG
128 TCATTTCATGGGTTGGCTTAGGCATAC
* * * ** * *
23205463 GGAGTTCATTCCATGTCTAAG-CCCTAGTCGGACTGAGGGTTGTTGCAGCGGGACCGACAGCATG
1 GGAGTTCATTCCATGTCTAAGATCCGA-TCGGACTGAAGGTTGCAGCAGC--GATCGACAGCACG
* ** * * * *
23205527 CAGAGGAGGACCGGGCCAATTCTTGGCTTACGTATTATGCCTCTTCGGTCGACTCAGCGCCTGCT
63 CA-AGGGGGACCGGGCCAA-TCCCGGCTTGCGTATTCTGCCTC-TCGGTCGGCTAAGCGCCTGC-
* * * *
23205592 A-GCTCATTTCATGGGTTGACATATGCGTAC
124 ACGCTCATTTCATGGGTTGGCTTAGGCATAC
* * * * * * *
23205622 AGAGTTAATTCCCA-GTCTAAGATCCGACCGGTCTGAAGGTTGCGGCAGCAGATCAACAGCACGT
1 GGAGTTCATT-CCATGTCTAAGATCCGATCGGACTGAAGGTTGCAGCAGC-GATCGACAGCACGC
* * * *
23205686 AAGGGGGACCGAGCCAATCCGCGGCTTGCGTATTCTGCCTCTCTGTCTGGCTAAGCACTTGCACG
64 AAGGGGGACCGGGCCAATCC-CGGCTTGCGTATTCTGCCTCTCGGTC-GGCTAAGCGCCTGCACG
*
23205751 CTCATTTCGTGGGTTGGCTTAGGCATAC
127 CTCATTTCATGGGTTGGCTTAGGCATAC
23205779 GGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
23205800 CATATGGAGT
Statistics
Matches: 262, Mismatches: 60, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
154 2 0.01
155 36 0.14
156 12 0.05
157 80 0.31
158 24 0.09
159 98 0.37
160 10 0.04
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (154 bp):
GGAGTTCATTCCATGTCTAAGATCCGATCGGACTGAAGGTTGCAGCAGCGATCGACAGCACGCAA
GGGGGACCGGGCCAATCCCGGCTTGCGTATTCTGCCTCTCGGTCGGCTAAGCGCCTGCACGCTCA
TTTCATGGGTTGGCTTAGGCATAC
Found at i:23205809 original size:26 final size:26
Alignment explanation
Indices: 23205773--23205825 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23205763 GTTGGCTTAG
23205773 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
23205799 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23205825 G
1 G
23205826 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23205952 original size:184 final size:183
Alignment explanation
Indices: 23205623--23205983 Score: 467
Period size: 184 Copynumber: 2.0 Consensus size: 183
23205613 TATGCGTACA
* * * *
23205623 GAGTTAATTCCCAGTCTAAGATCCGACCGGTCTGAAGGTTGCGGCAGCAGATCAACAGCACGTAA
1 GAGTTAATTCCCAGTCTAAGATCCGACCGGACCGAAGGTTCCGACAGCAGATCAACAGCACGTAA
* * * * * * * ** *
23205688 GGGGGACCGAGCCAATCCGCGGCTTGCGTATTCTGCCTCTCTGTCTGGCTAAGCACTTGCACGCT
66 GGGGGACCGAGCCAATCCGCAGCTTGCGCATTCTACATCTCCGGCCGGCTAAGCACCCGCACGCC
23205753 CATTTCGTGGGTTGGCTTAGGCATACGG-AGTTCATTCCATGTCTAAGCATATG
131 CATTTCGTGGGTTGGCTTAGGCATA-GGAAGTTCATTCCATGTCTAAGCATATG
* * * * *
23205806 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTCCGACAGCAGGATCGACAGCACG-C
1 GAGTTAATTCCCAGTCTAAGATCCGACCGGACCGAAGGTTCCGACAGCA-GATCAACAGCACGTA
* *
23205870 AGGGAGGACCGAGCCAATTCC-CAGCTTGTGCATTCTACATCTCCGGCCGGCTGAGCACCCGCAC
65 AGGG-GGACCGAGCCAA-TCCGCAGCTTGCGCATTCTACATCTCCGGCCGGCTAAGCACCCGCAC
*
23205934 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAG
128 GCCCATTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAG
23205984 GCCCAACCAG
Statistics
Matches: 152, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
183 48 0.32
184 101 0.66
185 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (183 bp):
GAGTTAATTCCCAGTCTAAGATCCGACCGGACCGAAGGTTCCGACAGCAGATCAACAGCACGTAA
GGGGGACCGAGCCAATCCGCAGCTTGCGCATTCTACATCTCCGGCCGGCTAAGCACCCGCACGCC
CATTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCATATG
Found at i:23206353 original size:499 final size:498
Alignment explanation
Indices: 23205223--23206534 Score: 1305
Period size: 499 Copynumber: 2.6 Consensus size: 498
23205213 CCTCTCCAGC
* * * *
23205223 CTGCCTCTCCGACCGACTGAGCA-CCCGCACGCTCATTTTGTGGGTTGACTTAAGCATACGGAGT
1 CTGCCTCTTCGACCGACTGAG-AGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
* * *
23205287 TCATCCCCA-GTCTAAGCGTATGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAAGG-TTG
65 TCAT-TCCATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAAGGTTTG
* * * * * *
23205350 -CAGCAGGATCGACAGCACGCATGGGGGACTGGGCCGATCTCCGGCTTGCACATTCTGCCTCTCC
129 ACAGCAGGATCGACAGCACGCATGGGGGACCGAGCCAATCTCCAGCTTGCACATTCTACATCTCC
* * *
23205414 GGTCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
194 GGCCGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGT
** * * * * *
23205479 CTAAGCCCTAGTCGGACTGAGGGTTGTTGCAGCGGGACCGACAGCATGCAGAGGAGGACCGGGCC
259 CTAAGCCCTAACCAGACTGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGAGGACCAGGCC
* ** ** * *
23205544 AATTCTTGGCTTACGTATTATGCCTCTTCGGTCGACTCAGCGCCTGCTAGCTCATTTCATGGGTT
324 AATCCCCGGCTTACGTATTATGCCTCTTCGACCGACTCAACGCCTACTAGCTCATTTCATGGGTT
* * * * *
23205609 GACATATGCGTACAGAGTTAATTCCCAGTCTAAGATCCGACCGGTCTGAAGGTTGCGGCAGCAGA
389 GACATAGGCATACAGAGTTAATTCCCAGTCTAAGATCCGACCAGACCGAAGGTTGCGGCAGCAGA
* * *
23205674 TCAACAGCACGTAAGGGGGACCGAGCCAATCCGCGGCTTGCGTATT
454 TCAACAGCACG-AAGGGGGACCGAGCCAATCCCCGACTTGCGCATT
* * * *
23205720 CTGCCTC-TCTGTCTGGCT-A-AGCACTTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGA
1 CTGCCTCTTC-GACCGACTGAGAGC-C-CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGA
* * *
23205782 GTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTC
63 GTTCATTCCATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAAGGTT-
* **
23205847 CGACAGCAGGATCGACAGCACGCA-GGGAGGACCGAGCCAAT-TCCCAGCTTGTGCATTCTACAT
127 TGACAGCAGGATCGACAGCACGCATGGG-GGACCGAGCCAATCT-CCAGCTTGCACATTCTACAT
* *
23205910 CTCCGGCCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCC
190 CTCCGGCCGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTCC
*
23205975 ATGTCTAAGGCCC-AACCAGA-TCGAGGGGTTGTGGCAGTGGGACCGACAGCACGCAGAAG-GGA
255 ATGTCTAA-GCCCTAACCAGACT-GA-GGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGAGGA
** * *
23206037 CCAGGCTGATCCCCGGCTTACG-ATTATGCTTC-TCTGACCGGCTCAACGCCTAC-ACGCTCATT
317 CCAGGCCAATCCCCGGCTTACGTATTATGCCTCTTC-GACCGACTCAACGCCTACTA-GCTCATT
* * * * *
23206099 TCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGC
380 TCATGGGTTGACATAGGCATACAGAGTTAATTCCCAGTCTAAGATCCGACCAGACCGAAGGTTGC
** * *
23206164 GGCAGCAAGATTGACAGTAC-ACAGGGGGACCCGA-CCGATCCCCGACTTGCGCATT
445 GGCAGC-AGATCAACAGCACGA-AGGGGGA-CCGAGCCAATCCCCGACTTGCGCATT
* * * * *
23206219 CTGCCTCTTCGGCCGACTGAGAGCCCGTATGCTCGA-TTCGTGGGTTGGCTTAGGCACACAGAGT
1 CTGCCTCTTCGACCGACTGAGAGCCCGCACGCTC-ATTTCGTGGGTTGGCTTAGGCATACGGAGT
* * * * *
23206283 TCATTCCATGTCTAAGCATACGGAGTTCATTTCTAGTCTAAGATCGGATCGAATCGATGGTTGTG
65 TCATTCCATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAAGGTT-TG
* * * * * * * *
23206348 ACAGCAAGGCCAGCAGTAGGACCGGCAGCATGCAGGGGGGATCGAGTCGATC-CCTGGCTTGCGC
129 ACAGC-A-G---G-A-T-----CGACAGCACGCATGGGGGACCGAGCCAATCTCC-AGCTTGCAC
* * *** * * ** * *
23206412 ATTCTGCCTCTCCTATCGGTTGAGCACCCGCACGCTCATTTTGTGGGTTAGCTTAGGCATACGAA
181 ATTCTACATCTCCGGCCGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGAA
* ** * *
23206477 GTTCATTCCATGTCTAAGCTCTAGTCGGA-TCGAGGGTTGTGGCAGCAGGACCGACAGC
246 GTTCATTCCATGTCTAAGCCCTAACCAGACT-GAGGGTTGTGGCAGCGGGACCGACAGC
23206535 GGGATTGGCG
Statistics
Matches: 672, Mismatches: 105, Indels: 63
0.80 0.12 0.08
Matches are distributed among these distances:
494 1 0.00
495 1 0.00
496 6 0.01
497 97 0.14
498 5 0.01
499 225 0.33
500 159 0.24
501 38 0.06
504 1 0.00
505 1 0.00
506 1 0.00
510 28 0.04
511 106 0.16
512 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (498 bp):
CTGCCTCTTCGACCGACTGAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAAGGTTTGAC
AGCAGGATCGACAGCACGCATGGGGGACCGAGCCAATCTCCAGCTTGCACATTCTACATCTCCGG
CCGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCT
AAGCCCTAACCAGACTGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGAGGACCAGGCCAA
TCCCCGGCTTACGTATTATGCCTCTTCGACCGACTCAACGCCTACTAGCTCATTTCATGGGTTGA
CATAGGCATACAGAGTTAATTCCCAGTCTAAGATCCGACCAGACCGAAGGTTGCGGCAGCAGATC
AACAGCACGAAGGGGGACCGAGCCAATCCCCGACTTGCGCATT
Found at i:23207142 original size:158 final size:157
Alignment explanation
Indices: 23206604--23207151 Score: 505
Period size: 159 Copynumber: 3.5 Consensus size: 157
23206594 TCAGTCGGTG
* * * * * ** * *
23206604 TCTCCGACCAGTTGAGCGCCCGTACGCTCGTTTAATGGGTTGACTTAGGCATACGGAGTTCATCC
1 TCTCCGACCGGCTCAGCGCCTGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * *
23206669 CA-GTCTAAGATCAGACCAGACTGAGGG-T-TACGGAGCAAGATCGACCGCACGTAAGGGGGATT
66 CATGTCTAAGATCAGACCAGACCGAGGGTTGTA-GCAGCAGGATCGACAGCACG-CAGGGGGATC
*
23206731 GGGCTGATCCCCGACTTGCGCATTCTGCC
129 GGGCTGATCCCCGGCTTGCGCATTCTGCC
* * * * * *
23206760 TCTCTGACTGGCTTAGCGCCTGCACG-TCCGTTTTGTGGGTTGGCTTAGGCGTAGGGACTTCATT
1 TCTCCGACCGGCTCAGCGCCTGCACGCT-CGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATT
** * * * *
23206824 CCATGTCTAAGCCCCAG-CCAGACCAAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGA
65 CCATGTCTAAG-ATCAGACCAGACCGAGGGTTGTAGCAGCAGGATCGACAGCACGC--AGGGGGA
* * * * *
23206888 CCAGGCTGATCCCCAGCTTGCACATTATGCC
127 TCGGGCTGATCCCCGGCTTGCGCATTCTGCC
* * * * * * * *
23206919 TCTTCGACCGACTCAGCACCCGCACGCTTGTTTTGTGGGTTGACTTATGCATACAGAGTTCATTC
1 TCTCCGACCGGCTCAGCGCCTGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATT-
* * * *
23206984 CCA-GTCTAAGATCAGATCAGACCGAGGGTTGTAGCTGCAGGATCGATAGCATGCAGGGTGGATC
65 CCATGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCAGGATCGACAGCACGCAGGG-GGATC
* *
23207048 GGGCTGATCCTCGGCTTGTGCATTCTGCC
129 GGGCTGATCCCCGGCTTGCGCATTCTGCC
* * * * * *
23207077 TCTCCGGCCGGCTGAGCGCCTGCACGCTCATTTCGTGGCTTGGCTTAGGAATACGGAGTTCATTC
1 TCTCCGACCGGCTCAGCGCCTGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTC
23207142 CATGTCTAAG
66 CATGTCTAAG
23207152 CATACGGAGT
Statistics
Matches: 303, Mismatches: 77, Indels: 22
0.75 0.19 0.05
Matches are distributed among these distances:
155 1 0.00
156 51 0.17
157 24 0.08
158 106 0.35
159 117 0.39
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
TCTCCGACCGGCTCAGCGCCTGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTC
CATGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCAGGATCGACAGCACGCAGGGGGATCGG
GCTGATCCCCGGCTTGCGCATTCTGCC
Found at i:23207174 original size:26 final size:26
Alignment explanation
Indices: 23207127--23207176 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
23207117 TGGCTTAGGA
*
23207127 ATACGGAGTTCATTCCATGTCTAAGC
1 ATACGGAGTTCATCCCATGTCTAAGC
*
23207153 ATACGGAGTTGACTCCCA-GTCTAA
1 ATACGGAGTTCA-TCCCATGTCTAA
23207177 CATTTTGAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
ATACGGAGTTCATCCCATGTCTAAGC
Found at i:23207263 original size:11 final size:11
Alignment explanation
Indices: 23207247--23207278 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
23207237 CCCAGGGCAC
23207247 CATCGTCGGAG
1 CATCGTCGGAG
23207258 CATCGTCGGAG
1 CATCGTCGGAG
23207269 CATCGTCGGA
1 CATCGTCGGA
23207279 CAGCCTAACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.19, C:0.28, G:0.34, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:23208410 original size:26 final size:26
Alignment explanation
Indices: 23208381--23208433 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23208371 GTTGGCTTAG
*
23208381 GCATATGGAGCTCATTCC-ATGTCTAA
1 GCATACGGAGCTCATTCCTA-GTCTAA
*
23208407 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCTAGTCTAA
23208433 G
1 G
23208434 ATTTTGAGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCTAGTCTAA
Found at i:23208638 original size:26 final size:26
Alignment explanation
Indices: 23208609--23208659 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23208599 TGACTTAGGG
23208609 ATACGGAGTTCA-TCCTCAGTCTAAGC
1 ATACGGAGTTCATTCC-CAGTCTAAGC
23208635 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
23208660 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:23208937 original size:159 final size:158
Alignment explanation
Indices: 23208633--23209133 Score: 478
Period size: 159 Copynumber: 3.2 Consensus size: 158
23208623 CTCAGTCTAA
* * * **
23208633 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAAGGTTGC-GATAGCAGGATTGA
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCGAACCGAGGGTTGCTG-TAG-AGGACCGA
* * * * * * *
23208696 CAACACGCA-AGGGGGACCGGGCCGATCCCCGCCTTGCGCGATTCTACCTCTCTGACCGGTTGAG
63 CAGCATGCAGAGGGGGACCGGGCTGATCCCTGGCTTGCGC-ATTCTACCTCTCCGACCGGCTGAG
* *
23208760 CGCTCGCACGCCCGTTTCATGGGTTGGCTTAG
127 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
23208792 GCATAGGGAGTTCATTCCATGTCTAAGACCTAG-CCGAACCGAGGGTTG-TGGCT-GAGGGACCG
1 GCATACGGAGTTCATTCCATGTCTAAGACC-AGACCGAACCGAGGGTTGCT-G-TAGA-GGACCG
** * * * *
23208854 GTAGCATGCAGAGGGGGACCGGGTTGATCCCTGGCTTGCGCATTATTCCTCTCCGACCGGCTCAG
62 ACAGCATGCAGAGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTACCTCTCCGACCGGCTGAG
* * * * *
23208919 CACCCGCATGCTCTTTTCATGGGCTGACTTAG
127 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * *
23208951 GCTTACGAAGTTCATTCCCA-GCCTAAGATCAGACCGGACTGAGGGTTGCTGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCGAACCGAGGGTTGCTGTAG-AGGACCGAC
* * * ***
23209015 AGCATGCAG-GTGGGGACCGGGCTGATCACTGGCTTGTGCATTCTGCCTCTCCGGTTGGCTGAGC
64 AGCATGCAGAG-GGGGACCGGGCTGATCCCTGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGC
* *
23209079 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
23209110 GCATACGGAGTTCATTCCATGTCT
1 GCATACGGAGTTCATTCCATGTCT
23209134 TATCATACGG
Statistics
Matches: 273, Mismatches: 56, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
158 11 0.04
159 227 0.83
160 35 0.13
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCGAACCGAGGGTTGCTGTAGAGGACCGACAG
CATGCAGAGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:23209703 original size:159 final size:157
Alignment explanation
Indices: 23209200--23209979 Score: 606
Period size: 159 Copynumber: 4.9 Consensus size: 157
23209190 CAGGACCAAC
* * * * * * * * * * * *
23209200 AGCAGGATCAATCGCACGTAGGGGGGATCGGGCTAATCCTCAGCTTGTGTATTCTACCTCTTCGG
1 AGCAGGATCGATAGCACGCAGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGA
** * * * *
23209265 TCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC-ATGTC
66 TCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTA-GTC
*
23209329 TAAGCCCCAACCGAACCGAAGGTTGTGGTAGCAGG
130 TAAGCCCCAACCG-ACCG-AGG--GT--T-GCAGT
* * * * * * * *
23209364 ACCGGCAGCGGGATCGACAGCACACAGAAGGGGATCAGGTTAATCCTC-GCTTGCGTATTATGCC
1 A---GCA---GGATCGATAGCACGCAG-GGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCC
* *
23209428 TCTCCGATCGGTTGAGCGCTCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
59 TCTCCGATCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
* * ** *
23209493 CTAGTCTAAGATCGCGTCAGACCGAGGGTTGCAGT
124 CTAGTCTAAG-CCCCAACCGACCGAGGGTTGCAGT
* * * * *
23209528 AGCAGGATCGACAGCACGCAGGGGGGCACCGGGCTTATCCCCGGTTTGCGCATTCTGCCTCTCCG
1 AGCAGGATCGATAGCACGCAGGGGGG-ATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCG
* * * *
23209593 ACCGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTT-AGCTTAGGCATAGGGAGTTCATTCC-ATG
65 ATCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGA-CTTAGGCATACGGAGTTCATTCCTA-G
** *
23209656 TCTAAGCCCCAACCGAACCGAGGGTTGTTGC
128 TCTAAGCCCCAACCG-ACCGAGGGTTGCAGT
* * * * * * *
23209687 AACGGGA-CCAGTAGCACACTGAGGGGGATCGAG-TCGATCCCTGGCTTGCGCATTATGCCTCTC
1 AGCAGGATCGA-TAGCACGCAG-GGGGGATCGGGCT-GATCCCCGGCTTGCGCATTATGCCTCTC
* * * * * * *
23209750 CGGTCTGCTCAGTGCCCGCACGCTCGTTTCATGGATTGACTTAGGCATACAGAGTTCATTCCTAG
63 CGATCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAG
** * *
23209815 TCTAAG-ATCAGACCGGACTGATGGTTGCAGT
128 TCTAAGCCCCA-ACC-GACCGAGGGTTGCAGT
* * * * *
23209846 AGCAGGATCGATAGCACGCAGGGAGGATCGGACTGATCCCCGACTTGCACATTCTGCCTCTCCGA
1 AGCAGGATCGATAGCACGCAGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGA
* * *
23209911 TCGGGTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGGTT-ATTCC-ATGT
66 TCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA-GTTCATTCCTA-GT
23209974 CTAAGC
129 CTAAGC
23209980 ATACGGAGTT
Statistics
Matches: 488, Mismatches: 102, Indels: 57
0.75 0.16 0.09
Matches are distributed among these distances:
157 5 0.01
158 125 0.26
159 216 0.44
160 10 0.02
161 3 0.01
164 6 0.01
165 1 0.00
167 5 0.01
169 3 0.01
170 92 0.19
171 22 0.05
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
AGCAGGATCGATAGCACGCAGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGA
TCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCT
AAGCCCCAACCGACCGAGGGTTGCAGT
Found at i:23209864 original size:318 final size:323
Alignment explanation
Indices: 23209270--23209979 Score: 920
Period size: 318 Copynumber: 2.2 Consensus size: 323
23209260 TTCGGTCGAC
*
23209270 TGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
*
23209335 CCAACCGAACCGAAGGTTGTGGTAGCAGGACCGGCAGCGGGATCGACAGCACACAGAAGGGGATC
66 CCAACCGAACCGAAGGTTGT-GTAGCA-GACCGGCAGC-GCA-CGACAGCACACAGAAGGGGATC
* * * * * *
23209400 AGGTTAATCCTCGCTTGCGTATTATGCCTCTCCGATCGGTTGAGCGCTCGTACGCTCGTTTCATG
127 AGGTCAATCCTCGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCATG
* *
23209465 GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGCGTCAGACCGAGGGTTGCAGTAG
192 GATTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGCG-CAGACCGAGGGTTGCAGTAG
* * * ** *
23209530 CAGGATCGACAGCACGCAGGGGGGCACCGGGCTTATCCCCGGTTTGCGCATTCTGCCTCTCCGAC
256 CAGGATCGACAGCACGCAGGGAGG-ACCGGACTGATCCCCGACTTGCACATTCTGCCTCTCCGAC
*
23209595 CGGT
320 CGGG
* *
23209599 TGAGCGCCCGCACGCCCGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * * * *
23209664 CCAACCGAACCGAGGGTTGT-T-GCA-A-CGGGA-C-CA-G-TAGCACACTGAGGGGGATC-GAG
66 CCAACCGAACCGAAGGTTGTGTAGCAGACCGGCAGCGCACGACAGCACACAGAAGGGGATCAG-G
* * * * *
23209720 TCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCTGCTCAGTGCCCGCACGCTCGTTTCATGGA
130 TCAAT-CCTCGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCATGGA
* * *
23209785 TTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGAC-CGGACTGATGGTTGCAGTAGC
194 TTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATC-G-CGCAGACCGAGGGTTGCAGTAGC
* * *
23209849 AGGATCGATAGCACGCAGGGAGGATCGGACTGATCCCCGACTTGCACATTCTGCCTCTCCGATCG
257 AGGATCGACAGCACGCAGGGAGGACCGGACTGATCCCCGACTTGCACATTCTGCCTCTCCGACCG
23209914 GG
322 GG
*
23209916 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGGTT-ATTCCATGTCTAAGC
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGA-GTTCATTCCATGTCTAAGC
23209980 ATACGGAGTT
Statistics
Matches: 338, Mismatches: 38, Indels: 22
0.85 0.10 0.06
Matches are distributed among these distances:
316 1 0.00
317 113 0.33
318 130 0.38
319 1 0.00
320 2 0.01
322 1 0.00
323 4 0.01
324 1 0.00
326 3 0.01
327 1 0.00
329 81 0.24
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (323 bp):
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
CCAACCGAACCGAAGGTTGTGTAGCAGACCGGCAGCGCACGACAGCACACAGAAGGGGATCAGGT
CAATCCTCGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCATGGATT
GACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGCGCAGACCGAGGGTTGCAGTAGCAGGA
TCGACAGCACGCAGGGAGGACCGGACTGATCCCCGACTTGCACATTCTGCCTCTCCGACCGGG
Found at i:23209994 original size:26 final size:26
Alignment explanation
Indices: 23209952--23210004 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
23209942 GTTGGCTTAG
23209952 GCATACGGAGGTTATT-CCATGTCTAA
1 GCATACGGAGGTTATTCCCA-GTCTAA
23209978 GCATACGGA-GTTCATTCCCAGTCTAA
1 GCATACGGAGGTT-ATTCCCAGTCTAA
23210004 G
1 G
23210005 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 3 0.12
26 19 0.76
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGGTTATTCCCAGTCTAA
Found at i:23210537 original size:26 final size:26
Alignment explanation
Indices: 23210507--23210559 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23210497 GTTGACTTAG
23210507 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23210533 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23210559 G
1 G
23210560 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23211894 original size:26 final size:26
Alignment explanation
Indices: 23211839--23211894 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
23211829 TGGGTTGGCT
* *
23211839 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCATACGAAGTTCATTCCATGTA
23211865 TAAGCATACGAAGTTCATTCCCA-GTA
1 TAAGCATACGAAGTTCATT-CCATGTA
23211891 TAAG
1 TAAG
23211895 ATTGGACCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCATGTA
Found at i:23212264 original size:26 final size:26
Alignment explanation
Indices: 23212212--23212264 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
23212202 GTTGACTTAG
* * *
23212212 GCATACGGAGTTCATCCCCGATCTAA
1 GCATACAGAGTGCATCCCCAATCTAA
* *
23212238 GCATACAGAGTGCATTCCCAATTTAA
1 GCATACAGAGTGCATCCCCAATCTAA
23212264 G
1 G
23212265 ATCGGACCAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTGCATCCCCAATCTAA
Found at i:23212711 original size:26 final size:26
Alignment explanation
Indices: 23212682--23212734 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23212672 CTTGGCTTAG
23212682 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23212708 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23212734 G
1 G
23212735 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23213322 original size:354 final size:362
Alignment explanation
Indices: 23212660--23213336 Score: 847
Period size: 354 Copynumber: 1.9 Consensus size: 362
23212650 CTTACGCATG
* * *
23212660 CTCGTTTCGTGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGGAGTTCATTC
* * *
23212725 CCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGTAGCAGGACTAGCAGCAGGATCAGCAGCACG
66 CCAGTCTAAGATCGGACCAGAC--ACGG-TGCGGTAGCA-GACTAGCA-CAGGATCAGCAGCACG
* * ** *
23212790 CAGGGGGGATCGGGTCGATCCTCGACTTGCGTATTCTGCCTCTCCGATCGGTTGAGTGCCTGCAC
126 CAGGGGGGACCGGGTCGATCCTCGACTTGCGTATTCTGCCTCTCCGACCGACTGAGCGCCTGCAC
* **
23212855 GCTCATTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGA
191 GCTCATTTCGTGGGTTGACTTAGGCATAAGAAGTTCATTCCATGTCTAAGCCCCAACCGGACCGA
* * *
23212920 GGGCTGTGGCGGCAGGATAGGTAGCGGGATCGACAGCATGCAGAGGGGGATCGGGCTGATCCCTG
256 GGGCTGTGGCAGCAGGACAGGTAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCTG
23212985 GCTTGCGCATCATGCCTCTCCGGTTGGCTGAGCACCCGTACT
321 GCTTGCGCATCATGCCTCTCCGGTTGGCTGAGCACCCGTACT
* * *
23213027 CTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCAAGTCTAAGCATATGGAGTTCATTC
1 CTCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGGAGTTCATTC
* * * *
23213092 CCAGTGTACGATCTGACCAGAC-CGG-G-GGTTGC-GAC-AGCA-A-GATC-GACAGCACGCAGG
66 CCAGTCTAAGATCGGACCAGACACGGTGCGGTAGCAGACTAGCACAGGATCAG-CAGCACGCAGG
* * * * *
23213149 GGGGACCGGG-CGATCCTCGGCTTGTGTATTCTGCCTCTCTGGCCGACTGAGCG-CTCGCACTCT
130 GGGGACCGGGTCGATCCTCGACTTGCGTATTCTGCCTCTCCGACCGACTGAGCGCCT-GCACGCT
* * *
23213212 CGTTTCGTGGGTTGGCTTAGGCATACAG-AGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGG
194 CATTTCGTGGGTTGACTTAGGCATA-AGAAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGG
* * * * * *
23213276 GTTGTGGTAGTAGGACCGGTAGCTGGATC-AGCAGCACGTAGAGGGGGATCGGGCTGATCCC
258 GCTGTGGCAGCAGGACAGGTAGCGGGATCGA-CAGCACGCAGAGGGGGATCGGGCTGATCCC
23213337 CGACTTATGC
Statistics
Matches: 268, Mismatches: 38, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
353 3 0.01
354 148 0.55
355 25 0.09
356 1 0.00
358 4 0.01
359 3 0.01
361 5 0.02
362 1 0.00
364 2 0.01
367 76 0.28
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.24
Consensus pattern (362 bp):
CTCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCGGACCAGACACGGTGCGGTAGCAGACTAGCACAGGATCAGCAGCACGCAGGG
GGGACCGGGTCGATCCTCGACTTGCGTATTCTGCCTCTCCGACCGACTGAGCGCCTGCACGCTCA
TTTCGTGGGTTGACTTAGGCATAAGAAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGCT
GTGGCAGCAGGACAGGTAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCTGGCTTG
CGCATCATGCCTCTCCGGTTGGCTGAGCACCCGTACT
Found at i:23213963 original size:157 final size:156
Alignment explanation
Indices: 23213478--23213965 Score: 439
Period size: 158 Copynumber: 3.1 Consensus size: 156
23213468 GATCAGACCG
* *
23213478 GACCGAGGGTTGGTGACAGCAGGATCGACAGCACGTAAGGGGGATC-GAGCCAATCCCCGGCTTA
1 GACCGAGGGTT-GTGGCAGCAGGATCGACAGCACGTAAGGGGGA-CAG-GCCGATCCCCGGCTTA
* * * * ** * * * * * *
23213542 TGCATTTTACCTATCCAATCGGCTGAGCGCTCGTACACCCGTTTCATTGGTTGGCTTAGGCATAG
63 CGCATTATGCCTATTC-GGCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAC
*
23213607 GGGGTTCATTCCATGTCTAAGCCCCAGTCA
127 GGAGTTCATTCCATGTCTAAGCCCCAGTCA
* * * * * * * *
23213637 GACCGAGGGTTGTGGCA-CTGAGACCGACAGCACGCAAAGGGGACCGAGCCGATCCTCAGCTTGC
1 GACCGAGGGTTGTGGCAGCAG-GATCGACAGCACGTAAGGGGGACAG-GCCGATCCCCGGCTTAC
* * * * * * *
23213701 GCATTATGCCTTTTCGGCTAGCTTAGCACCCGCACGCTCATATT-ATGGGTTGACTTAGGCATAC
64 GCATTATGCCTATTCGGCGA-CTGAGCGCCCGTACGCTCGT-TTCATGGGTTGGCTTAGGCATAC
** *
23213765 GGAGTTCATTCC-TAGTCTAA-CATCAGACCA
127 GGAGTTCATTCCAT-GTCTAAGCCCCAG-TCA
* * * * *
23213795 GACCAAAGGTTGTGGCAGCAGGATTGACAGCACGTAGGGGGGACAAGGCTGATCCCCGGCTTACG
1 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAAGGGGGAC-AGGCCGATCCCCGGCTTACG
* * *
23213860 CATTCTGCCTCTTCGGCCGAC-GAGGGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
65 CATTATGCCTATTCGG-CGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
* *
23213924 AGTTTATTCCATGTCTAAGCCCCAGTCG
129 AGTTCATTCCATGTCTAAGCCCCAGTCA
23213952 GACCGAGGGTTGTG
1 GACCGAGGGTTGTG
23213966 CTATCAGGAC
Statistics
Matches: 256, Mismatches: 61, Indels: 26
0.75 0.18 0.08
Matches are distributed among these distances:
156 2 0.01
157 71 0.28
158 165 0.64
159 18 0.07
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (156 bp):
GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAAGGGGGACAGGCCGATCCCCGGCTTACGC
ATTATGCCTATTCGGCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCCCCAGTCA
Found at i:23214883 original size:55 final size:55
Alignment explanation
Indices: 23214799--23214907 Score: 164
Period size: 55 Copynumber: 2.0 Consensus size: 55
23214789 GCTGCAGCAC
* * * *
23214799 ACCAGTTGCCCGCACGTAAGGTTGACACCAACCTTTATGCTAGTCCCGCAAGGGG
1 ACCAGTCGCCCGCACGCAAGGTTGACACCAACCATCATGCTAGTCCCGCAAGGGG
* *
23214854 ACCAGTCGCCCGCATGCATGGTTGACACCAACCATCATGCTAGTCCCGCAAGGG
1 ACCAGTCGCCCGCACGCAAGGTTGACACCAACCATCATGCTAGTCCCGCAAGGG
23214908 ACTTGAGTGG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.24, C:0.33, G:0.25, T:0.18
Consensus pattern (55 bp):
ACCAGTCGCCCGCACGCAAGGTTGACACCAACCATCATGCTAGTCCCGCAAGGGG
Found at i:23219619 original size:158 final size:159
Alignment explanation
Indices: 23219280--23219643 Score: 401
Period size: 158 Copynumber: 2.3 Consensus size: 159
23219270 GACACACCCG
* * * **
23219280 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCCCCAGCTGGACCAAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCAAGGGTT
* * * * *
23219345 ATGGCAGCAGGATCGGTAGCTCACAAAGGGGGACCTGGCCGATCCCTGGCTTGCGCATTATGCCT
66 ATGGCAGCAGGATCGATAGCACACAAAGGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCT
*** *
23219410 CTCCGGTTGGCTCAACGCCCGCATGCTCA
131 CTCCGACCGGCTCAACGCCCGCACGCTCA
* * * * **
23219439 TTTCGTGGGTTGACCTATGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACCAGACTGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAG-CCAGACCAAGGG
* * * * * * *
23219502 TTCTGGCAGCAGGATCGATAGCACGC-AGGGGGGATCAGGCTGATCCCCGGTTTACGCATTCTGC
64 TTATGGCAGCAGGATCGATAGCACACAAAGGGGGACCAGGCCGATCCCCGGCTTACGCATTATGC
* * * *
23219566 CTCTCTGACCGGCTGAGCGCCTGCACGCTCA
129 CTCTCCGACCGGCTCAACGCCCGCACGCTCA
*
23219597 TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
23219644 TACGGAGTTC
Statistics
Matches: 166, Mismatches: 35, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
158 96 0.58
159 70 0.42
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCAAGGGTT
ATGGCAGCAGGATCGATAGCACACAAAGGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCT
CTCCGACCGGCTCAACGCCCGCACGCTCA
Found at i:23219665 original size:26 final size:26
Alignment explanation
Indices: 23219615--23219667 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23219605 GTTGGCTTAG
*
23219615 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
23219641 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
23219667 G
1 G
23219668 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:23220357 original size:26 final size:26
Alignment explanation
Indices: 23220327--23220379 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23220317 GTTGACTTAG
*
23220327 GCATATGGAGTTCATCCCTAGTTTAA
1 GCATATGGAGTTCATCCCTAGTCTAA
*
23220353 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATCCCTAGTCTAA
23220379 G
1 G
23220380 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCTAGTCTAA
Found at i:23221245 original size:27 final size:26
Alignment explanation
Indices: 23221196--23221249 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
23221186 GTTGACTTAT
23221196 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
23221222 GCATACGGAAGTTCATTCCTAGTCTAA
1 GCATACGG-AGTTCATCCCCAGTCTAA
23221249 G
1 G
23221250 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23221549 original size:159 final size:159
Alignment explanation
Indices: 23221350--23221744 Score: 411
Period size: 159 Copynumber: 2.5 Consensus size: 159
23221340 TTGCTGAGTG
* * *
23221350 CCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTAATTCCATGTCTAAGCCCCAGCC
1 CCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCCCCAGCC
* * * * * *
23221415 AGACCGAGGGTTGTGGTAGCGAGA-CTGACAGCACACAGCGGGAGACTGGGTCGATCC-CTAGCT
66 AGACCGAGGGTTGCGATAGCGAGATC-GACAGCACACAGAGGCAGACCGAGTCGATCCTC-AGCT
* *
23221478 TGCGCATTATGCCTCTTCGATCGGCTCAGCA
129 TGCGCATTATGCCTCTCCGACCGGCTCAGCA
* * * * **
23221509 CCCGTATGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGA
1 CCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTAATT-CCATGTCTAAGCCCCAG-
* * * * ** *
23221572 CCAGATCAAGGGTTGCGATAGTGGGATCGACAGCATGCAGAGGCAGACCGAGTCGATCCTCGGCT
64 CCAGACCGAGGGTTGCGATAGCGAGATCGACAGCACACAGAGGCAGACCGAGTCGATCCTCAGCT
* * * *
23221637 TGTGCATTCTGCCTCTCCGACCGGTTGAGCA
129 TGCGCATTATGCCTCTCCGACCGGCTCAGCA
* * * * * *
23221668 CCTGTACGCTCGTTTTGTGGGTTGGCTTAGGCATACGAAGTTGATTCCATGTCCAAGCCCCAGTC
1 CCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCCCCAGCC
*
23221733 AGACTGAGGGTT
66 AGACCGAGGGTT
23221745 ATGGCAGTAG
Statistics
Matches: 188, Mismatches: 42, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
158 6 0.03
159 174 0.93
160 8 0.04
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
CCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCCCCAGCC
AGACCGAGGGTTGCGATAGCGAGATCGACAGCACACAGAGGCAGACCGAGTCGATCCTCAGCTTG
CGCATTATGCCTCTCCGACCGGCTCAGCA
Found at i:23221912 original size:26 final size:26
Alignment explanation
Indices: 23221890--23221986 Score: 122
Period size: 26 Copynumber: 3.7 Consensus size: 26
23221880 AGGCATACGG
23221890 AGTTCATCCCCAGTCTAAGCATACAA
1 AGTTCATCCCCAGTCTAAGCATACAA
* * * ***
23221916 AGTTCATTCTCAGTCTAAGCGTATGG
1 AGTTCATCCCCAGTCTAAGCATACAA
*
23221942 AGTTTATCCCCAGTCTAAGCATACAA
1 AGTTCATCCCCAGTCTAAGCATACAA
*
23221968 AGTTCATTCCCAGTCTAAG
1 AGTTCATCCCCAGTCTAAG
23221987 ATCGAACTGG
Statistics
Matches: 56, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (26 bp):
AGTTCATCCCCAGTCTAAGCATACAA
Found at i:23221951 original size:52 final size:52
Alignment explanation
Indices: 23221888--23221986 Score: 180
Period size: 52 Copynumber: 1.9 Consensus size: 52
23221878 TTAGGCATAC
*
23221888 GGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCTCAGTCTAAGCGTAT
1 GGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGCGTAT
*
23221940 GGAGTTTATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAG
1 GGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAG
23221987 ATCGAACTGG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 45 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.28
Consensus pattern (52 bp):
GGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGCGTAT
Found at i:23222445 original size:26 final size:26
Alignment explanation
Indices: 23222416--23222468 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23222406 GTTGGCTTAG
23222416 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
23222442 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23222468 G
1 G
23222469 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23222657 original size:26 final size:26
Alignment explanation
Indices: 23222621--23222673 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23222611 GTTGACTTAG
*
23222621 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
23222647 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23222673 G
1 G
23222674 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23224130 original size:26 final size:25
Alignment explanation
Indices: 23224100--23224151 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
23224090 GTTGGCTTAG
23224100 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
*
23224126 GCATACGGAGTTCATTCTAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
23224151 G
1 G
23224152 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:23224982 original size:158 final size:158
Alignment explanation
Indices: 23224504--23225004 Score: 497
Period size: 159 Copynumber: 3.2 Consensus size: 158
23224494 CCTAATCTAA
* * * **
23224504 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTACGGCTGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
** * *
23224569 GCACATAG-GGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGACTGAGCCCC
66 GCACGCAGAGGGGACCGGGCCGATCCCCAGCTTGCGCATTATACCTCTCCGACCGACTGAGCGCC
* *
23224633 CGCACGCCCATTTCGTCGGTTGGCTTAG
131 CGCACGCTCATTTCGTGGGTTGGCTTAG
* * * ** * * *
23224661 GTATAGGGAGTTCATT-CCATGTCTAAG-CCCCAACTGGATTGAGGGTTGTGGCAGCAGGAGT-G
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATC-GGATCGAGGGTTGCGGCAGCAGGA-TCG
* * * ** * * *
23224723 ACAGCACGCAGTAGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGATTGGCTCAA
63 ACAGCACGCAG-AGGGGACCGGGCCGATCCCCAGCTTGCGCATTATACCTCTCCGACCGACTGAG
* * **
23224788 CGCCCGCATGCTCATTTCATGGGTTAACTTAG
127 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * *
23224820 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
** * ** * * ** *
23224885 AAACGCAGAAGGGATTGGGCCAATCCCCAGTTTGTACATTTTACCTCTCCGACCGACTGAGCGCC
66 GCACGCAGAGGGGACCGGGCCGATCCCCAGCTTGCGCATTATACCTCTCCGACCGACTGAGCGCC
* *
23224950 CGCACACTCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCATTTCGTGGGTTGGCTTAG
**
23224978 GCATACGGAGTTCATTCCGTGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
23225005 CCCCAGTCGA
Statistics
Matches: 267, Mismatches: 69, Indels: 15
0.76 0.20 0.04
Matches are distributed among these distances:
156 5 0.02
157 49 0.18
158 90 0.34
159 117 0.44
160 6 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGAGGGGACCGGGCCGATCCCCAGCTTGCGCATTATACCTCTCCGACCGACTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:23225192 original size:26 final size:26
Alignment explanation
Indices: 23225162--23225214 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23225152 GTTGACTTAG
23225162 GCATACGGTGTTCA-TCCCTAGTCTAA
1 GCATACGGTGTTCATTCCC-AGTCTAA
23225188 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGTGTTCATTCCCAGTCTAA
23225214 G
1 G
23225215 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGTGTTCATTCCCAGTCTAA
Found at i:23225770 original size:357 final size:356
Alignment explanation
Indices: 23224928--23225781 Score: 958
Period size: 357 Copynumber: 2.4 Consensus size: 356
23224918 GTACATTTTA
*
23224928 CCTCTCCGACCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
* * * *
23224993 TCCGTGTCTAAGCCCCAGTCGAACCGAGAGTTGTGACAGCAAGACCGACTGTGGGATCAACAGCA
66 TCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTG---GC---A--G-C---GGGATCGACAGCA
* * ** ** *
23225058 TGTAAAGGGGGACCGAACTGATCCCCGGCTTACGTATTATGCCTCTCCATTCGGCCTCTTCGGCC
119 TGCAGAGGGGGACCGAACTGATCCCCGGCTTACACATTATGCCTCTCCATTCAACCTCTTCAGCC
* * * * * * * * *
23225123 GGCTGAGCTCTCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGTGTTCATCCCTAGTCTAA
184 GACTGAGCGCCCGCACGCTCATTTCATGGGTTAACTTAAGCACACGGAGTTCATCCCCAATCTAA
* * * * *
23225188 GCATACGGTGTTCATTCCCAGTCTAAGATCGGATTGGATCAAGGGTTACGATAGTAGGATCGGTA
249 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCAAGGGTTACGACAGCAGGATCGGTA
* *
23225253 GCACGTAGGGGGGACCGAGCCGATCCCTGGCTTGCACATTCTG
314 GCACGCAGGGGGGACCGAGCCGATCCCTGGCTTACACATTCTG
* * *
23225296 CCTCTCCGACCGACTTAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGCCATACGGAGTTCAT
1 CCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
* * ** *
23225361 TCCATCTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGTAGGACCGACAGCATGCAGAGGGGGA
66 TCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCATGCAGAGGGGGA
** * * * *
23225426 CCGGGCTGATCCCCGGTTTGCACATTATGCCTCTCCGA-TCAACCTTTTCAGTCGACTGAGCGCC
131 CCGAACTGATCCCCGGCTTACACATTATGCCTCTCC-ATTCAACCTCTTCAGCCGACTGAGCGCC
* *
23225490 CGCACGCTCGTTTCGTGGGTTAACTTAAGCACACGGAGTTCATCCCCAATCTAAGCATACGGAGT
195 CGCACGCTCATTTCATGGGTTAACTTAAGCACACGGAGTTCATCCCCAATCTAAGCATACGGAGT
* * * * * * *
23225555 TCATTCCTAGTCTAAGATCAGACCTGGTTCGAGGGTTGCGGCAGCAGGATCGGTTGTACGCAGGG
260 TCATTCCCAGTCTAAGATCAGA-CTGGATCAAGGGTTACGACAGCAGGATCGGTAGCACGCAGGG
* * * *
23225620 GGGACGGGGCTGAT-CCTCGGCTTACGCATTCTG
324 GGGACCGAGCCGATCCCT-GGCTTACACATTCTG
* * * *
23225653 CCTCT-CGAGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
1 CCTCTCCGA-CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
** * * *
23225717 TTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGCGGGATTGACAGCACGCAGCAGGGG
65 TTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCATGCAG-AGGGG
23225782 ATCGGGCCAA
Statistics
Matches: 409, Mismatches: 72, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
356 150 0.37
357 159 0.39
358 5 0.01
360 1 0.00
362 1 0.00
365 2 0.00
368 91 0.22
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (356 bp):
CCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCATGCAGAGGGGGA
CCGAACTGATCCCCGGCTTACACATTATGCCTCTCCATTCAACCTCTTCAGCCGACTGAGCGCCC
GCACGCTCATTTCATGGGTTAACTTAAGCACACGGAGTTCATCCCCAATCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACTGGATCAAGGGTTACGACAGCAGGATCGGTAGCACGCAGGGGG
GACCGAGCCGATCCCTGGCTTACACATTCTG
Found at i:23226779 original size:26 final size:26
Alignment explanation
Indices: 23226742--23226794 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23226732 GTTAACTTAG
23226742 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
23226768 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
23226794 G
1 G
23226795 ATTCGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23227088 original size:159 final size:159
Alignment explanation
Indices: 23226820--23227271 Score: 498
Period size: 159 Copynumber: 2.8 Consensus size: 159
23226810 GGGTTGCGGT
* * * * ** * * * *
23226820 AGCAGGATCGGCAGCACGTAGGGGGGACCGGACCGATCCCTGACTTGCGCATTCTGCCTCTCTGG
1 AGCAAGATCGACAGCACGCAGGGAGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
* * * * * *
23226885 CCGGCTGAGCGCCTGCACGCCCGTTTCATGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTCT
66 CCGGCTGAGCGCCCGCACACACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* *
23226950 AAGCCCCAG-CCAG-ACCGAGGGTTATGGC
131 AAGCACCAGACC-GCACCGAGGGTTATGAC
** * * * *
23226978 AGCGGGATCGACAGCATGCAGCGGAGGATCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCG
1 AGCAAGATCGACAGCACGCAG-GGAGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
* * * * *
23227043 ACCGGCTCAACGCCCGCACACACGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-AT
65 ACCGGCTGAGCGCCCGCACACACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGT
* *
23227107 CTAAG-ATCAGACCGCACCGAGGGTTGTGAC
129 CTAAGCACCAGACCGCACCGAGGGTTATGAC
* * * * *
23227137 AGCAAGATCGACAGCACGTAGGGGGGACCGGGTCAATCCCCAGCTTGCGTATTCTGCCTCTCCGA
1 AGCAAGATCGACAGCACGCAGGGAGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
* * *
23227202 CTGGCTGAGCGCCCGCACTCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
66 CCGGCTGAGCGCCCGCACACACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
23227267 AAGCA
131 AAGCA
23227272 TACGAAGTTC
Statistics
Matches: 240, Mismatches: 48, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
157 3 0.01
158 114 0.47
159 120 0.50
160 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.21
Consensus pattern (159 bp):
AGCAAGATCGACAGCACGCAGGGAGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
CCGGCTGAGCGCCCGCACACACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCACCAGACCGCACCGAGGGTTATGAC
Found at i:23227232 original size:158 final size:157
Alignment explanation
Indices: 23226768--23227269 Score: 537
Period size: 158 Copynumber: 3.2 Consensus size: 157
23226758 CCCAGTCTAA
* * * * *
23226768 GCATACGAAGTTCATTCCCAGTCTAAGATTC-GACTGGACCGAGGGTTGCGGTAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCAGAC-CGACCGAGGGTTGTGGCAGCAGGATCGAC
** * * *
23226832 AGCACGTAGGGGGGACCGGACCGAT-CCCTGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCG
64 AGCACGTAGGGGGGACCGGGTCGATCCCCAG-CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * * * *
23226896 CCTGCACGCCCGTTTCATGGGATGGCTTAG
128 CCCGCACACACGTTTCGTGGGTTGGCTTAG
* ** * *
23226926 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTATGGCAGCGGGATCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACC-GACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * * * * *
23226989 CAGCATGCAGCGGAGGATCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGGCTCAAC
63 CAGCACGTAG-GGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
*
23227054 GCCCGCACACACGTTTCGTGGGTTGACTTAG
127 GCCCGCACACACGTTTCGTGGGTTGGCTTAG
* * * *
23227085 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGCACCGAGGGTTGTGACAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-ACCGAGGGTTGTGGCAGCAGGATCGACA
* * *
23227150 GCACGTAGGGGGGACCGGGTCAATCCCCAGCTTGCGTATTCTGCCTCTCCGACTGGCTGAGCGCC
65 GCACGTAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* *
23227215 CGCACTCTCGTTTCGTGGGTTGGCTTAG
130 CGCACACACGTTTCGTGGGTTGGCTTAG
23227243 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
23227270 CATACGAAGT
Statistics
Matches: 279, Mismatches: 55, Indels: 20
0.79 0.16 0.06
Matches are distributed among these distances:
157 6 0.02
158 150 0.54
159 116 0.42
160 7 0.03
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGTAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
GCACACACGTTTCGTGGGTTGGCTTAG
Found at i:23227280 original size:26 final size:26
Alignment explanation
Indices: 23227243--23227295 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23227233 GTTGGCTTAG
*
23227243 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
23227269 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
23227295 G
1 G
23227296 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:23227664 original size:26 final size:26
Alignment explanation
Indices: 23227635--23227687 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23227625 GGTTGACTTG
*
23227635 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
23227661 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
23227687 G
1 G
23227688 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23228139 original size:157 final size:156
Alignment explanation
Indices: 23227661--23228161 Score: 449
Period size: 159 Copynumber: 3.2 Consensus size: 156
23227651 CCCAGTCTAA
* *
23227661 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGATCGGATCGAGGGTTGCGGT-GACAGGATCGG
1 GCATACAGAGTTCATT-CCATGTCTAAGATCGGATCGAATCGAGGGTTGCGGTAG-CAGGATCGA
* * * *
23227724 CAGCACGCAGGGGGGACCGAGCCGATCCCC-AGCTTGTGCATTCTGCCTCTTCGATCAGCTGAGT
64 CAGCTCG-AGGGGGGACCGAG-CGATCCCCGA-CTTGCGCATTCTGCCTCTTCGACCAGCTGAGC
* * * * *
23227788 GCTCGCATGCCCGTTTCATGCGTTGGCTTAG
126 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * ** * * * * * *
23227819 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCCAGATCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACAGAGTTCATTCCATGTCTAAGATCGGATCGA-ATCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * * * * * *
23227883 AGCATGCAAAGGAGGATCGAGCTGATCCCCGACTTGCACATTATGTCTCTTCGGCC-GACTCAAC
65 AGC-T-CGAGGGGGGACCGAGC-GATCCCCGACTTGCGCATTCTGCCTCTTCGACCAG-CTGAGC
* * *
23227947 GCCCGCACGCTCGTTTTGTGGGTTGACTTAT
126 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
23227978 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGATCGAACCGAGGGTTACGGTAGCAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCGGATCGAATCGAGGGTTGCGGTAGCAGGATCGAC
* * * *
23228042 AGCTCGTGGGGGGACCGGGTCGATCCCCGACTTGCGTATTCTACCTC-TCTGACCAGCTGAGCGC
65 AGCTCGAGGGGGGACCGAG-CGATCCCCGACTTGCGCATTCTGCCTCTTC-GACCAGCTGAGCGC
*
23228106 CCGCACGTTCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
23228135 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
23228162 CATAAGGAGT
Statistics
Matches: 262, Mismatches: 67, Indels: 29
0.73 0.19 0.08
Matches are distributed among these distances:
156 5 0.02
157 92 0.35
158 49 0.19
159 107 0.41
160 9 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCGGATCGAATCGAGGGTTGCGGTAGCAGGATCGACA
GCTCGAGGGGGGACCGAGCGATCCCCGACTTGCGCATTCTGCCTCTTCGACCAGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:23228186 original size:26 final size:26
Alignment explanation
Indices: 23228135--23228187 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23228125 GTTGGCTTAG
* *
23228135 GCATACGGAGTTCATTCCATGTCTAA
1 GCATAAGGAGTTCATTCCATGCCTAA
23228161 GCATAAGGAGTTCATTCCCA-GCCTAA
1 GCATAAGGAGTTCATT-CCATGCCTAA
23228187 G
1 G
23228188 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCATGCCTAA
Found at i:23235273 original size:157 final size:155
Alignment explanation
Indices: 23234800--23235299 Score: 488
Period size: 159 Copynumber: 3.2 Consensus size: 155
23234790 CCCAGTCCAA
* *
23234800 GCATACGAAGTTCATT-CATAGTCTAAGATCAGACCAGACC-AAGGGTTGCGACAGCAGGATCGG
1 GCATACGGAGTTCATTCCATA-TCTAAGATCAGACCAGACCGAA-GGTTGCGGCAGCAGGATCGG
* * * * * *
23234863 TAGCACGCAGGGGTGATCAGGCCGATCCCCAGCTTGCGTATTCTGCCTCTCCGGCCGGTTGAGTG
64 TAGCACGCAGGGG-GA-CCGGCCGAT-CCCGGCTTACGCATTCTGCCTCTCCGGCCAGTTGAGCG
*
23234928 CCCGCACGC-CTGCTTCGTGGGTTGGCTTAG
126 CCCGCACGCTC-GTTTCGTGGGTTGGCTTAG
** * ** * * * ** * *
23234958 GCATTGGGAGTTCATTCCATGTCTAAGCCCCAG-CCCGACCGAGGGTTGTGGCAGTGGGACCGGC
1 GCATACGGAGTTCATTCCATATCTAAG-ATCAGACCAGACCGAAGGTTGCGGCAGCAGGATCGGT
* * * *
23235022 AGAACGCAGAGGGGGACCGGGCCGATCCCTGGCTTACACATTATGCCTCTCCGGCCAGCTT-AGG
65 AGCACGC--AGGGGGACC-GGCCGATCCC-GGCTTACGCATTCTGCCTCTCCGGCCAG-TTGAGC
* * *
23235086 GCCCACACGCTCGTTTCATGGGTTGACTTAG
125 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* **
23235117 GCATACGGAGTTCATTCCCTATCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCAGGATCAATA
1 GCATACGGAGTTCATTCCATATCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCAGGATCGGTA
* ** *
23235182 GCACGCAGGGGGACCGGACTGATCCTCGGCTTACGCATTCTGCCTCTTTGGCCAGTTGAGCACCC
66 GCACGCAGGGGGACCGG-CCGATCC-CGGCTTACGCATTCTGCCTCTCCGGCCAGTTGAGCGCCC
23235247 GCACGCTCGTTTCGTGGGTTGGCTTAG
129 GCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
23235274 GCATACGAAATTCAATCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
23235300 TCACACAGAG
Statistics
Matches: 271, Mismatches: 58, Indels: 27
0.76 0.16 0.08
Matches are distributed among these distances:
156 4 0.01
157 89 0.33
158 54 0.20
159 116 0.43
160 8 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATATCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCAGGATCGGTA
GCACGCAGGGGGACCGGCCGATCCCGGCTTACGCATTCTGCCTCTCCGGCCAGTTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:23235684 original size:26 final size:26
Alignment explanation
Indices: 23235654--23235706 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23235644 GTTGACTTAG
*
23235654 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
23235680 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
23235706 G
1 G
23235707 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:23235963 original size:153 final size:157
Alignment explanation
Indices: 23235740--23236066 Score: 599
Period size: 153 Copynumber: 2.1 Consensus size: 157
23235730 GCAGCAAGAT
23235740 CGATAGCACGCAGGGGGGACCGGGCCGATCCCTGACTTGCATATTCTGCCTCTTCCAACGGCTGG
1 CGATAGCACGCAGGGGGGACCGGGCCGATCCCTGACTTGCATATTCTGCCTCTTCCAACGGCTGG
23235805 GTGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
66 GTGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
23235870 TCCG-ATCGAGGGTTGTGGCA-GGGAC
131 TCCGAATCGAGGGTTGTGGCAGGGGAC
23235895 CGA-AGCACGCAGGGGGGA-CGGGCCGATCCCTGACTTGCATATTCTGCCTCTTCCAACGGCTGG
1 CGATAGCACGCAGGGGGGACCGGGCCGATCCCTGACTTGCATATTCTGCCTCTTCCAACGGCTGG
23235958 GTGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
66 GTGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
*
23236023 TCCGAATTGAGGGTTGTGGCAGTGGGAC
131 TCCGAATCGAGGGTTGTGGCAG-GGGAC
*
23236051 CGATAGCACGGAGGGG
1 CGATAGCACGCAGGGG
23236067 ACGGCTCCGA
Statistics
Matches: 166, Mismatches: 2, Indels: 6
0.95 0.01 0.03
Matches are distributed among these distances:
153 114 0.69
154 30 0.18
155 3 0.02
156 8 0.05
157 11 0.07
ACGTcount: A:0.17, C:0.27, G:0.33, T:0.23
Consensus pattern (157 bp):
CGATAGCACGCAGGGGGGACCGGGCCGATCCCTGACTTGCATATTCTGCCTCTTCCAACGGCTGG
GTGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
TCCGAATCGAGGGTTGTGGCAGGGGAC
Found at i:23236188 original size:26 final size:26
Alignment explanation
Indices: 23236152--23236204 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23236142 GTTGACTTAT
*
23236152 GCATACGGAGTTCAGTCTCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
* *
23236178 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
23236204 G
1 G
23236205 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:23236639 original size:153 final size:153
Alignment explanation
Indices: 23236178--23236665 Score: 498
Period size: 159 Copynumber: 3.1 Consensus size: 153
23236168 CTCAGTCTAA
* * *
23236178 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGAT-AAGC
1 GCATACGGAGTTCATTCCCAATCTAAGAT-----CGGACCGAGGGTTGTGGCAGCAGGATCGA-C
* *
23236242 AGCACGCAGGGGGGATCGGGCTGATCCCCAGCTTGCACATTCTGCCTCTCCAACCGGCTGAGCAC
60 AGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCAACCGGCTGAGCAC
* * *
23236307 CCGTACGCCCGTTTCGTGGGTT-AGCTTAG
125 CCGCACGCTCTTTTCGTGGGTTGA-CTTAG
* * *
23236336 GCATAGGGAGTTCATT-CCAATTCTAAGTCCCAGTTGGACCGAGGGTTGTGGCAGCAGGACCGAC
1 GCATACGGAGTTCATTCCCAA-TCTAAG----A-TCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * ** * * **
23236400 AGCATGCAAAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTATGCCTTTTCGGCTGGCTCAGGG
60 AGCACGC-AGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCAACCGGCTGAGCA
*
23236465 CCCGCACACTCATTTT-GTGGGTTGACTTAG
124 CCCGCACGCTC-TTTTCGTGGGTTGACTTAG
** *
23236495 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGAGGGTTACGCCAGCAGGATCGACAGCACG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACG
* * * * * *
23236560 CAGGGGGGACCGGGCCGATCCCCGGCTTGCGCTTTCTACCTCTCCAATCGGCTGAGCCCCCGCAC
66 CAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCAACCGGCTGAGCACCCGCAC
*
23236625 GCTCTTTTCGTGGGTTGGCTTAG
131 GCTCTTTTCGTGGGTTGACTTAG
*
23236648 GCATACGGGGTTCATTCC
1 GCATACGGAGTTCATTCC
23236666 ATGTCTAAGC
Statistics
Matches: 269, Mismatches: 49, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
152 4 0.01
153 81 0.30
154 32 0.12
155 1 0.00
157 3 0.01
158 52 0.19
159 86 0.32
160 8 0.03
162 1 0.00
163 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (153 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACG
CAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCAACCGGCTGAGCACCCGCAC
GCTCTTTTCGTGGGTTGACTTAG
Found at i:23236673 original size:153 final size:154
Alignment explanation
Indices: 23236212--23236676 Score: 499
Period size: 153 Copynumber: 3.0 Consensus size: 154
23236202 AAGATCGAAC
* *
23236212 CGGACCGAGGGTTGTGGCAGCAGGAT-AAGCAGCACGCAGGGGGGATCGGGCTGATCCCCAGCTT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGA-CAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTT
* * * * *
23236276 GCACATTCTGCCTCTCCAACCGGCTGAGCACCCGTACGCCCGTTTCGTGGGTTAGCTTAGGCATA
65 GCGCATTCTGCCTCTCCAACCGGCTGAGCACCCGCACGCTCTTTTCGTGGGTTGGCTTAGGCATA
23236341 -GGGAGTTCATTCCAATTCTAAGTCCCAGT
130 CGGG-GTTCATTCC-ATTCTAAG---CAGT
* * * * *
23236370 TGGACCGAGGGTTGTGGCAGCAGGACCGACAGCATGCAAAGGGGGATCGGGTCGATCCCCAGCTT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC-AGGGGGGATCGGGCCGATCCCCAGCTT
* * * ** * * ** * *
23236435 GCGCATTATGCCTTTTCGGCTGGCTCAGGGCCCGCACACTCATTTT-GTGGGTTGACTTAGGCAT
65 GCGCATTCTGCCTCTCCAACCGGCTGAGCACCCGCACGCTC-TTTTCGTGGGTTGGCTTAGGCAT
* *
23236499 ACGGAGTTCATTCCCAATCTAAG-A-T
129 ACGGGGTTCATT-CCATTCTAAGCAGT
** * * *
23236524 CGGACCGAGGGTTACGCCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTG
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTG
* * * *
23236589 CGCTTTCTACCTCTCCAATCGGCTGAGCCCCCGCACGCTCTTTTCGTGGGTTGGCTTAGGCATAC
66 CGCATTCTGCCTCTCCAACCGGCTGAGCACCCGCACGCTCTTTTCGTGGGTTGGCTTAGGCATAC
23236654 GGGGTTCATTCCATGTCTAAGCA
131 GGGGTTCATTCCAT-TCTAAGCA
23236677 CATAGAGTTC
Statistics
Matches: 248, Mismatches: 51, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
152 7 0.03
153 85 0.34
154 33 0.13
155 1 0.00
158 31 0.12
159 84 0.34
160 7 0.03
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.22
Consensus pattern (154 bp):
CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTG
CGCATTCTGCCTCTCCAACCGGCTGAGCACCCGCACGCTCTTTTCGTGGGTTGGCTTAGGCATAC
GGGGTTCATTCCATTCTAAGCAGT
Found at i:23236891 original size:26 final size:26
Alignment explanation
Indices: 23236861--23236937 Score: 118
Period size: 26 Copynumber: 3.0 Consensus size: 26
23236851 TGACTTAGGA
* *
23236861 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGACTTCATTCCCAGTCTAAGC
* *
23236887 ATACGAATTTCATTCCCAGTCTAAGC
1 ATACGGACTTCATTCCCAGTCTAAGC
23236913 ATACGGACTTCATTCCCAGTCTAAG
1 ATACGGACTTCATTCCCAGTCTAAG
23236938 ATCAGACTAG
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACGGACTTCATTCCCAGTCTAAGC
Found at i:23237244 original size:160 final size:158
Alignment explanation
Indices: 23236971--23237411 Score: 396
Period size: 159 Copynumber: 2.8 Consensus size: 158
23236961 ACAGCAAGAT
** ** * * * * * *
23236971 CGACAGCATGCAGGGGGGACCGGGTTGATCTCCGGCTTGTGCATTCTACCTCT-TCGATCGACTG
1 CGACAGCACACAGGGGGGACCGGGTCAATCCCCGGCTTGCGCATTATGCCTCTCT-GACCGACTC
** * * *
23237035 AATGCCCGCATGCCCATTTTGTGGGTTGGA-TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
65 AGCGCCCGCACGCTCATTTTGTGGGTT-GACTTAGGCAT-GGGAGTTCATTCCATGTCTAAGCAC
* * * **
23237099 CAG-TCGGA-TCGAGGGCTGTGGTAATGGGAC
128 CAGATCGAACT-GAGGGCTGCGGCAACAGGAC
* * * * *
23237129 CGACAGCACGCAGAGGGGGACTGGGTCAATCCCCGGCTTGCTCATTATGCCTCTCTGGCCGGGCT
1 CGACAGCACACAG-GGGGGACCGGGTCAATCCCCGGCTTGCGCATTATGCCTCTCTGACC-GACT
* * *
23237194 CAGCGCCCGCACGCTCATTTTGTGAGTTGACTTAGGCATGCGGTGTTCATTCCCA-GTCTGAG-A
64 CAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATG-GGAGTTCATT-CCATGTCTAAGCA
* * *
23237257 TCAGATCGAACTGAGGGTTGCGGCAACAGGAT
127 CCAGATCGAACTGAGGGCTGCGGCAACAGGAC
* * * *
23237289 CGACAGCACACAGGGGGGACCGGGTCGATCCCCGTCTTGCGCATTCTGCCTCTCTGACCGACTGA
1 CGACAGCACACAGGGGGGACCGGGTCAATCCCCGGCTTGCGCATTATGCCTCTCTGACCGACTCA
* * * *
23237354 GCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT---AGTTCATTCCATGTCTAAGCA
66 GCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATGGGAGTTCATTCCATGTCTAAGCA
23237412 TACGGAATTC
Statistics
Matches: 228, Mismatches: 45, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
153 3 0.01
154 13 0.06
155 1 0.00
158 48 0.21
159 80 0.35
160 79 0.35
161 4 0.02
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CGACAGCACACAGGGGGGACCGGGTCAATCCCCGGCTTGCGCATTATGCCTCTCTGACCGACTCA
GCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATGGGAGTTCATTCCATGTCTAAGCACCAG
ATCGAACTGAGGGCTGCGGCAACAGGAC
Found at i:23237775 original size:26 final size:26
Alignment explanation
Indices: 23237739--23237791 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23237729 GTTAACTTAG
*
23237739 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
23237765 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
23237791 G
1 G
23237792 ATCGGATTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:23238072 original size:158 final size:158
Alignment explanation
Indices: 23237846--23239214 Score: 1119
Period size: 158 Copynumber: 8.7 Consensus size: 158
23237836 AGGGGGATAA
* * * * * * * * * *
23237846 GGCCGATCCCCAGCTTGCGCATTCTGCCTC-TCCAGTCGGCTGAGCGCCCGCATGCCCATTTCAT
1 GGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGA-CCGGCTCAGCACCCGCACGCTCGTTTCGT
* *** *
23237910 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATTTGGATCGAGGGTTGTGATA
65 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGACA
* * *
23237975 GCGGGACCGACAGCACGTAGGGGGGACCG
130 GCAGGATCGACAGCACGCAGGGGGGACCG
* * * * * *
23238004 GGCCAATCCCTGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCACCTGTACGCTCGTTCCATG
1 GGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCGTTTCGTG
* * * ** ** * * **
23238069 GGTTGGCTTATGCATATGGAGTTCAGTCTCA-GTCTAAGATCGGATCGGACCGAGGGTTACGACA
66 GGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCCCCAACCGGATCGAGGGTTGTGACA
* * *
23238133 GTAGGATCGACAGCACGTAGGGGGGACCA
130 GCAGGATCGACAGCACGCAGGGGGGACCG
* * * * * * *
23238162 GGTCTATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCT-ATGCGCCCGCACGCCCGTTTCGT
1 GGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCA-GCACCCGCACGCTCGTTTCGT
* * * *
23238226 GGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCAAGGGTTGCGACA
65 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGACA
* * * *
23238291 GCGGGACCGACAGCACACAGAAGGGGACCG
130 GCAGGATCGACAGCACGCAG-GGGGGACCG
* * * * * *
23238321 AGCCGATCCCCGGCTTGCGCATTATGCCTCTTTGACCAGCTTAGCACCCGCACTCTTGTTTCGTG
1 GGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCGTTTCGTG
* * * **** * * ** *
23238386 GGTTGACTTATGCATACGGAGTTCATTTC-TAGTCTAA-AATTAGATCGGA-CTGAGAGTTACGG
66 GGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCA-ACCGGATC-GAGGGTTGTGA
* * *
23238448 CAGCAGGATCGATAGCACGCAGGAGGGATCG
128 CAGCAGGATCGACAGCACGCAGGGGGGACCG
* * * * * * * * *
23238479 GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCTGCACGCCCATTTCATG
1 GGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCGTTTCGTG
* * *
23238544 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAG
66 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGACAG
* *
23238609 CGGGATCGGCAGCACGCAGAGGGGGACCG
131 CAGGATCGACAGCACGCAG-GGGGGACCG
* * * *
23238638 GGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCAGCTCAGCACCTGCACGCTTGTTTCGTG
1 GGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCGTTTCGTG
* * ** ** * * *
23238703 GGTT-ACTTAGGCATACAGAGTTCATTCCCA--TCTAAGATCGGACCAGACCGAGGGTTG-CAGC
66 GGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGA-C
* ** *
23238764 AGCAGGATCAACAGCACATAGTGGGGACCG
129 AGCAGGATCGACAGCACGCAGGGGGGACCG
** * ** * * * * * * *
23238794 GGCCGATCCTTGACTTGTACATTCTGCCTCTTTGACCGGCTGAACGCCCGCACACCCGTTTCGTG
1 GGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCGTTTCGTG
* * * * * **
23238859 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGGATCGATGGTTGTGGTAG
66 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGACAG
* * * **
23238924 CGGGA-CTGGCAGCACACAGAGGCAGACCG
131 CAGGATC-GACAGCACGCAG-GGGGGACCG
* * * ** * * *
23238953 GGCCAATCCCCGGCTTACGCATTATGCCTCTTC-AGTCGGCTCAGTTCCCACACACTCATTTCGT
1 GGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGA-CCGGCTCAGCACCCGCACGCTCGTTTCGT
* * ** * * *
23239017 GGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGATCGGATTGAGGGTTGTGG
65 GGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCA-ACCGGATCGAGGGTTGTGA
* * *
23239080 CAGTAGGATTGACAGCACGCAGGGGGGATCG
128 CAGCAGGATCGACAGCACGCAGGGGGGACCG
* * * * * * *
23239111 GGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAACCGGTTGAGCACCCACACGCTCGTTTCGTG
1 GGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCGTTTCGTG
23239176 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
23239215 ATACAGAGTT
Statistics
Matches: 940, Mismatches: 243, Indels: 55
0.76 0.20 0.04
Matches are distributed among these distances:
156 64 0.07
157 60 0.06
158 505 0.54
159 310 0.33
160 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
GGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCGTTTCGTG
GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGACAG
CAGGATCGACAGCACGCAGGGGGGACCG
Found at i:23238510 original size:317 final size:315
Alignment explanation
Indices: 23237765--23239214 Score: 1706
Period size: 317 Copynumber: 4.6 Consensus size: 315
23237755 CCCAATCTAA
* * * * * *
23237765 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGAACTGAGGGTTACGGTAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTACGGCAGCAGGATCGACA
* ** * *
23237830 GCATGCAGGGGGATAAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCC-AGTCGGCTGAGCGCC
66 GCACGCAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGCGCC
* * * ***
23237894 CGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATTTGG
130 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* ** * *
23237959 ATCGAGGGTTGTGATAGCGGGACCGACAGCACGTAGGGGGGACCGGGCCAATCCCTGGCTTGCGC
195 ATCGAGGGTTGTGACAGCGGGACCGACAGCACACAGAGGGGACCGGGCCAATCCCCGGCTTGCGC
* * * * * *
23238024 ATTATGCCTCTTCGACCGGCTCAGCACCTGTACGCTCGTTCCATGGGTTGGCTTAT
260 ATTATGCCTCTTCGACCAGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAT
* * * * *
23238080 GCATATGGAGTTCAGT-CTCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGTAGGATCGAC
1 GCATACGGAGTTCATTCCT-AGTCTAAGATCGGATCGGACTGAGGGTTACGGCAGCAGGATCGAC
* * * * * *
23238144 AGCACGTAGGGGGGACCAGGTCTATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCT-ATGCG
65 AGCACGCA-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGA-GCG
* *
23238208 CCCGCACGCCCGTTTCGTGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACC
128 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * *
23238273 GGATCAAGGGTTGCGACAGCGGGACCGACAGCACACAGAAGGGGACCGAGCCGATCCCCGGCTTG
193 GGATCGAGGGTTGTGACAGCGGGACCGACAGCACACAG-AGGGGACCGGGCCAATCCCCGGCTTG
* * * *
23238338 CGCATTATGCCTCTTTGACCAGCTTAGCACCCGCACTCTTGTTTCGTGGGTTGACTTAT
257 CGCATTATGCCTCTTCGACCAGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAT
* * ** * *
23238397 GCATACGGAGTTCATTTCTAGTCTAAAATTAGATCGGACTGAGAGTTACGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTACGGCAGCAGGATCGACA
*
23238462 GCACGCAGGAGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCC
66 GCACGCAGG-GGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * *
23238527 TGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
130 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * * * *
23238592 ATCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCG
195 ATCGAGGGTTGTGACAGCGGGACCGACAGCACACAGA-GGGGACCGGGCCAATCCCCGGCTTGCG
* * * *
23238657 CATTATGCCTCTTCGGCCAGCTCAGCACCTGCACGCTTGTTTCGTGGGTT-ACTTAG
259 CATTATGCCTCTTCGACCAGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAT
* * * * * * * *
23238713 GCATACAGAGTTCATTCCCA-TCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCAACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTACGGCAGCAGGATCGACA
** * ** * ** ** *
23238777 GCACATAGTGGGGACCGGGCCGATCCTTGACTTGTACATTCTGCCTCTTTGACCGGCTGAACGCC
66 GCACGCAG-GGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * *
23238842 CGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGG
130 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* ** * * * *
23238907 ATCGATGGTTGTGGTAGCGGGACTGGCAGCACACAGAGGCAGACCGGGCCAATCCCCGGCTTACG
195 ATCGAGGGTTGTGACAGCGGGACCGACAGCACACAGAGG-GGACCGGGCCAATCCCCGGCTTGCG
* * ** * * *
23238972 CATTATGCCTCTTC-AGTCGGCTCAGTTCCCACACACTCATTTCGTGGGTTGACTTAT
259 CATTATGCCTCTTCGA-CCAGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAT
* * ** * *
23239029 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGATTGAGGGTTGTGGCAGTAGGATTGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTACGGCAGCAGGATCGACA
* * * *
23239094 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAACCGGTTGAGCACC
66 GCACGCA-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * *
23239159 CACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
130 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
23239215 ATACAGAGTT
Statistics
Matches: 957, Mismatches: 163, Indels: 28
0.83 0.14 0.02
Matches are distributed among these distances:
314 3 0.00
315 294 0.31
316 184 0.19
317 472 0.49
318 4 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (315 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTACGGCAGCAGGATCGACA
GCACGCAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
TCGAGGGTTGTGACAGCGGGACCGACAGCACACAGAGGGGACCGGGCCAATCCCCGGCTTGCGCA
TTATGCCTCTTCGACCAGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAT
Found at i:23238976 original size:632 final size:631
Alignment explanation
Indices: 23237765--23239214 Score: 1895
Period size: 632 Copynumber: 2.3 Consensus size: 631
23237755 CCCAATCTAA
* * * * * *
23237765 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGAACTGAGGGTTACGGTAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTACGGCAGCAGGATTGACA
* ** * *
23237830 GCATGCAGGGGGATAAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCGCCC
66 GCACGCAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCACT-GGCTGAGCGCCC
* ***
23237895 GCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATTTGGA
130 GCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
* * *
23237960 TCGAGGGTTGTGATAGCGGGACCGACAGCACGTAGGGGGGACCGGGCCAATCCCTGGCTTGCGCA
195 TCGAGGGTTGTGACAGCGGGACCGACAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCA
* * * * **
23238025 TTATGCCTCTTCGACCGGCTCAGCACCTGTACGCTCGTTCCATGGGTTGGCTTATGCATATGGAG
260 TTATGCCTCTTCGACCAGCTCAGCACCTGCACGCTCGTTCCATGGGTTGACTTAGGCATACAGAG
* * * * * *
23238090 TTCAGTCTCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGTAGGATCGACAGCACGTAGGG
325 TTCAGTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCAGGATCAACAGCACATAGGG
* * * * * *
23238155 GGGACCAGGTCTATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTATGCGCCCGCACGCCCG
390 GGGACCAGGCCGATCCCTGACTTGCACATTCTGCCTCTCCGACCGGCTATACGCCCGCACACCCG
*
23238220 TTTCGTGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCAAGGGTT
455 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCAAGGGTT
* * *
23238285 GCGACAGCGGGACCGACAGCACACAGAAGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCT
520 GCGACAGCGGGACCGACAGCACACAGAAGGAGACCGAGCCAATCCCCGGCTTACGCATTATGCCT
* * * * **
23238350 CTT-TGACCAGCTTAGCACCCGCACTCTTGTTTCGTGGGTTGACTTAT
585 CTTCAG-CCAGCTCAGCACCCACACACTCATTTCGTGGGTTGACTTAT
* * * * * *
23238397 GCATACGGAGTTCATTTCTAGTCTAAAATTAGATCGGACTGAGAGTTACGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTACGGCAGCAGGATTGACA
23238462 GCACGCAGGAGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCC
66 GCACGCAGG-GGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC-ACTGGCTGAGCGCC
*
23238527 TGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
129 CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * * *
23238592 ATCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCG
194 ATCGAGGGTTGTGACAGCGGGACCGACAGCACGCAG-GGGGGACCGGGCCAATCCCCGGCTTGCG
* * * *
23238657 CATTATGCCTCTTCGGCCAGCTCAGCACCTGCACGCTTGTTTCGTGGGTT-ACTTAGGCATACAG
258 CATTATGCCTCTTCGACCAGCTCAGCACCTGCACGCTCGTTCCATGGGTTGACTTAGGCATACAG
* *
23238721 AGTTCATTCCCA-TCTAAGATCGGACCAGACCGAGGGTTGC-AGCAGCAGGATCAACAGCACATA
323 AGTTCAGTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGA-CAGCAGGATCAACAGCACATA
* * * * **
23238784 GTGGGGACCGGGCCGATCCTTGACTTGTACATTCTGCCTCTTTGACCGGCTGA-ACGCCCGCACA
387 GGGGGGACCAGGCCGATCCCTGACTTGCACATTCTGCCTCTCCGACCGGCT-ATACGCCCGCACA
* * * * *
23238848 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGGATCGAT
451 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCAAG
* ** * * *
23238913 GGTTGTGGTAGCGGGACTGGCAGCACACAG-AGGCAGACCGGGCCAATCCCCGGCTTACGCATTA
516 GGTTGCGACAGCGGGACCGACAGCACACAGAAGG-AGACCGAGCCAATCCCCGGCTTACGCATTA
* * **
23238977 TGCCTCTTCAGTCGGCTCAGTTCCCACACACTCATTTCGTGGGTTGACTTAT
580 TGCCTCTTCAGCCAGCTCAGCACCCACACACTCATTTCGTGGGTTGACTTAT
* ** *
23239029 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGATTGAGGGTTGTGGCAGTAGGATTGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTACGGCAGCAGGATTGACA
* * * *
23239094 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAACCGGTTGAGCACC
66 GCACGCA-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC-ACTGGCTGAGCGCC
* * * * *
23239159 CACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
129 CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
23239215 ATACAGAGTT
Statistics
Matches: 705, Mismatches: 105, Indels: 16
0.85 0.13 0.02
Matches are distributed among these distances:
631 4 0.01
632 466 0.66
633 163 0.23
634 72 0.10
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (631 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTACGGCAGCAGGATTGACA
GCACGCAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCACTGGCTGAGCGCCCG
CACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAT
CGAGGGTTGTGACAGCGGGACCGACAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCAT
TATGCCTCTTCGACCAGCTCAGCACCTGCACGCTCGTTCCATGGGTTGACTTAGGCATACAGAGT
TCAGTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCAGGATCAACAGCACATAGGGG
GGACCAGGCCGATCCCTGACTTGCACATTCTGCCTCTCCGACCGGCTATACGCCCGCACACCCGT
TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCAAGGGTTG
CGACAGCGGGACCGACAGCACACAGAAGGAGACCGAGCCAATCCCCGGCTTACGCATTATGCCTC
TTCAGCCAGCTCAGCACCCACACACTCATTTCGTGGGTTGACTTAT
Found at i:23239223 original size:26 final size:26
Alignment explanation
Indices: 23239187--23239239 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23239177 GTTGGCTTAG
*
23239187 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
23239213 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
23239239 G
1 G
23239240 ATTTTTAGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:23240929 original size:26 final size:26
Alignment explanation
Indices: 23240879--23240931 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23240869 GTTGGCTTAG
*
23240879 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
23240905 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
23240931 G
1 G
23240932 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:23241276 original size:26 final size:26
Alignment explanation
Indices: 23241247--23241299 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23241237 GTTGACATAG
*
23241247 GCATACGAAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
23241273 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
23241299 G
1 G
23241300 ATTAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:23241680 original size:159 final size:158
Alignment explanation
Indices: 23241273--23241694 Score: 402
Period size: 159 Copynumber: 2.7 Consensus size: 158
23241263 CCCAGTCTAA
* * * *
23241273 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCAATAGCAGGATAGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * *
23241338 GCACGTAGAG-GGACCAGGCCGATCCCCGGCTTACGCATTCCACCTCTCCGACCGGCTGAGTGCC
66 GCACGTAGAGAGGACCGGGCCGATCCCCGACTTGCGCATTACACCTCTCCGACCGACTCAGTGCC
* *
23241402 CATACGCCCGTTTCGTGAGTTGGCTTAG
131 CATACGCCCATTTCGTGAGTTGACTTAG
* * *** * * * * * *
23241430 GTATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGAACTGAGGGTTGTGGCAGCGGGATC-A
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATTAGATCGGACCGAGGGTTGCGACAGCAGGATCGA
* * ** ** * *
23241492 GCAGCACGCAGAGAGGGATCGGGTTGATCCCCGACTTGCGCATTATGCTTCTCGGACCGACTCAG
64 -CAGCACGTAGAGA-GGACCGGGCCGATCCCCGACTTGCGCATTACACCTCTCCGACCGACTCAG
* * *
23241557 TGCCCGTACGCTCATTTCGTGGGTTGACTTAG
127 TGCCCATACGCCCATTTCGTGAGTTGACTTAG
* * *
23241589 GCATACGGAGTTTATTCCCAGTCTAAGATTAGATCGGACCGAGGTTTGCGACAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * * *
23241654 GCACATAGGGGAGGACCGGGCCGATCCCTGACTTGTGCATT
66 GCACGTA-GAGAGGACCGGGCCGATCCCCGACTTGCGCATT
23241695 CTACCTTTTC
Statistics
Matches: 200, Mismatches: 56, Indels: 16
0.74 0.21 0.06
Matches are distributed among these distances:
156 3 0.01
157 51 0.25
158 4 0.02
159 135 0.68
160 7 0.04
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCGACAGCAGGATCGACA
GCACGTAGAGAGGACCGGGCCGATCCCCGACTTGCGCATTACACCTCTCCGACCGACTCAGTGCC
CATACGCCCATTTCGTGAGTTGACTTAG
Found at i:23242633 original size:26 final size:26
Alignment explanation
Indices: 23242597--23242649 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23242587 GTTGGCTTAG
23242597 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
23242623 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23242649 G
1 G
23242650 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23242830 original size:26 final size:26
Alignment explanation
Indices: 23242794--23242846 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23242784 GTTGACTTAG
23242794 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* * *
23242820 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
23242846 G
1 G
23242847 ATTGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:23243658 original size:27 final size:27
Alignment explanation
Indices: 23243600--23243659 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 27
23243590 ATTCTTTCTA
* **
23243600 AAAAAATTTTAAAAAATCCTGAAACGT
1 AAAAAATTTTAAAAAATCATGAAAAAT
*
23243627 AAAAAGTTTT-AAAAATCATGAAAAAT
1 AAAAAATTTTAAAAAATCATGAAAAAT
*
23243653 AGAAAAT
1 AAAAAAT
23243660 GGGTCGTCTT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 18 0.67
27 9 0.33
ACGTcount: A:0.60, C:0.07, G:0.08, T:0.25
Consensus pattern (27 bp):
AAAAAATTTTAAAAAATCATGAAAAAT
Found at i:23244362 original size:158 final size:157
Alignment explanation
Indices: 23243884--23244385 Score: 521
Period size: 158 Copynumber: 3.2 Consensus size: 157
23243874 CCTGGTCTAA
* * *
23243884 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGATCAGACCGAGGGTTATAGCAGCAGGATCGGC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCA-ATAAGACTGAGGGTTGTAGCAGCAGGATCGGC
* * *
23243948 AGCACGCAGGGGGGATCG-GTCGCATCCCCGGCTTATGCATTCTGCCTTTTCGA-TCGGCTGAGC
64 AGCACGTAGGGGGGATCGAGTCG-ATCCCCGGCTTACGCATTCTGCCTCTTCGACT-GGCTGAGC
* *
23244011 ACCCACACGCCCATTTCGTGGGTTGGCTTAG
127 ACCCGCACGCTCATTTCGTGGGTTGGCTTAG
** ** ** * * * *
23244042 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCAAGA-TCGATGGTTGTGGCAGCGGGACCGGC
1 GCATACAGAGTTCATTCCATGTCTAAGATC-AATAAGACT-GAGGGTTGTAGCAGCAGGATCGGC
* ** * * * * ** * *
23244106 AGCACGTAGAGGGGGATCGAGCCGATCCTTGGCTTGCTCATTATGCCTCTTCGACCGATTCAGCG
64 AGCACGTAG-GGGGGATCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGACTGGCTGAGCA
* * * *
23244171 CCCGTACGCTCGTTTCGTGGGTTGACTTCG
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * *
23244201 GCATACGGAGTTCATTCC-TAGTCTAAGATCGAATAAGACTGAGGGTTGCAGCAGCAGGATCGAC
1 GCATACAGAGTTCATTCCAT-GTCTAAGATC-AATAAGACTGAGGGTTGTAGCAGCAGGATCGGC
* *
23244265 AGCACATAGGGGGGATCGAGTCGGTCCCCGGCTTACGCATTCTGCCTC-TCTGACTGGCTGAGCA
64 AGCACGTAGGGGGGATCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTTC-GACTGGCTGAGCA
*
23244329 CCCGCACGCTCATTTCCTGGGTTGGCTTAG
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
23244359 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
23244386 CTTGTGGAGT
Statistics
Matches: 270, Mismatches: 64, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
157 5 0.02
158 142 0.53
159 119 0.44
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAATAAGACTGAGGGTTGTAGCAGCAGGATCGGCAG
CACGTAGGGGGGATCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGACTGGCTGAGCACCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:23245408 original size:26 final size:26
Alignment explanation
Indices: 23245372--23245424 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23245362 GTTCACTTAG
*
23245372 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
23245398 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
23245424 G
1 G
23245425 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23246675 original size:158 final size:158
Alignment explanation
Indices: 23246369--23246711 Score: 445
Period size: 158 Copynumber: 2.2 Consensus size: 158
23246359 CCCAGTCTAA
* * * *
23246369 GCATACGAAGTTCATTCCTAGTCTAAGATCGGACCGGATCAAGGGTTGCGGCAACAGGATCGGTA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAACAGGATCGATA
* *
23246434 GCACACAGAGGGGATCGAATCGATCTCTGGCTTACGCATTCTGCCTCTCCGAGCGGCTGAGCACC
66 GCACACAGAGGGGACCGAATCGATCCCTGGCTTACGCATTCTGCCTCTCCGAGCGGCTGAGCACC
* * *
23246499 CGTATGCTCATTTCATGGGTTGACTTTG
131 CGCACGCTCATTTCATGGGTTGACTTAG
* * * * * *
23246527 GCATACAAAGTTCATTCCCAGTCTAAGTTCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAACAGGATCGATA
* * * * *
23246592 GCACGCAGAGGGGACCGAGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGATCGGTTGAGCTCC
66 GCACACAGAGGGGACCGAATCGATCCCTGGCTTACGCATTCTGCCTCTCCGAGCGGCTGAGCACC
* * * *
23246657 TGCACGCTCGTTTTATGGGTTGGCTTAG
131 CGCACGCTCATTTCATGGGTTGACTTAG
*
23246685 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGAAGTTCATTCCCA-GTCTAAG
23246712 CATACAAAGC
Statistics
Matches: 158, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
157 3 0.02
158 155 0.98
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAACAGGATCGATA
GCACACAGAGGGGACCGAATCGATCCCTGGCTTACGCATTCTGCCTCTCCGAGCGGCTGAGCACC
CGCACGCTCATTTCATGGGTTGACTTAG
Found at i:23246931 original size:26 final size:25
Alignment explanation
Indices: 23246894--23246945 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
23246884 GTTGACTTAG
23246894 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCC-AGTCTAA
*
23246920 GCATAC-AGAGTTCATTCCAGTCTAA
1 GCATACGA-AGTTCATCCCAGTCTAA
23246945 G
1 G
23246946 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (25 bp):
GCATACGAAGTTCATCCCAGTCTAA
Found at i:23247304 original size:159 final size:157
Alignment explanation
Indices: 23246920--23247420 Score: 510
Period size: 159 Copynumber: 3.2 Consensus size: 157
23246910 CCTAGTCTAA
* * * *
23246920 GCATACAGAGTTCATTCCA-GTCTAAGATCAGACC-AGACC-AATGATTGCGATAGTAGGATCAA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGA-ACCGAA-GGTTGCGGTAGTAGGATCGA
* * * * *
23246982 TAGCACGCAGGGGGGATCAGGTCGATCCTTGGCTTACGCATTCTGCCTCCCCGGTCTGCTGAGCG
64 TAGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGATC-GCTGAGCA
*
23247047 CCCGCACGCTCATTTCATGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * *
23247077 GCATACGAAGTTCATTCCATGTCTAAGCCCCAG-TCGAACCGAAGGTTGTGGCAGTGGGA-CTGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGAACCGAAGGTTGCGGTAGTAGGATC-GA
* * * * * ** * * * *
23247140 CAGCACGTAGAGGGGGACCGGGCCAATCCCTGGCTTGTGCATTATGCCTCTTCGATCAGCTCAAC
64 TAGCACGCAG-GGGGGATCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGATC-GCTGAGC
* * *
23247205 ACCCGAACGCTCGTTTCAGGGGTTGACTTAG
127 ACCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
23247236 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGAACTGAGGGTTGCGGTAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGAACCGAAGGTTGCGGTAGTAGGATCGAT
* * * * *
23247300 AGCACGCAGGGGGGATCGAGTCGGTCCCTGACTTACGCATTCTGCCTCTCCGATCGATTGAGCTC
65 AGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGATCG-CTGAGCAC
* *
23247365 CTGCACGCTCGTTTCATGGTTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
23247394 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
23247421 CATACGGAGT
Statistics
Matches: 270, Mismatches: 63, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 22 0.08
158 121 0.45
159 123 0.46
160 4 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGAACCGAAGGTTGCGGTAGTAGGATCGATA
GCACGCAGGGGGGATCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGATCGCTGAGCACCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:23247424 original size:26 final size:26
Alignment explanation
Indices: 23247394--23247446 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23247384 TTTGGCTTAG
23247394 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23247420 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23247446 G
1 G
23247447 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23247562 original size:184 final size:184
Alignment explanation
Indices: 23247236--23247605 Score: 494
Period size: 184 Copynumber: 2.0 Consensus size: 184
23247226 GTTGACTTAG
* ** *
23247236 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTACGACAGCAGGATCGACA
* * * * * * *
23247301 GCACGCAGGGGGGATCGAGTCGGTCCCTGACTTACGCATTCTGCCTCTCCGATCGATTGAGCTCC
66 GCACACAGGGAGGATCGAGGCGATCCCTGACTTACGCATTCTGCCTCTCCGACCGATCGAGCGCC
* * * *
23247366 TGCACGCTCGTTTCATGGTTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * *
23247420 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACTGAGGGTTACGACAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTACGACAGCAGGATCGACA
* * *
23247485 GTACACAGTGGAGGATC-AGGCTGATCCCCTG-CTTGCGCATTTTGCCTCTCCGACCGA-CGAGC
66 GCACACAG-GGAGGATCGAGGC-GAT-CCCTGACTTACGCATTCTGCCTCTCCGACCGATCGAGC
*
23247547 GCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
128 GCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
23247604 GC
1 GC
23247606 CCTAGTCGGA
Statistics
Matches: 161, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
184 124 0.77
185 32 0.20
186 5 0.03
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.25
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTACGACAGCAGGATCGACA
GCACACAGGGAGGATCGAGGCGATCCCTGACTTACGCATTCTGCCTCTCCGACCGATCGAGCGCC
CGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:23247792 original size:26 final size:26
Alignment explanation
Indices: 23247762--23247814 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23247752 GTTGACTTAG
23247762 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
23247788 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23247814 G
1 G
23247815 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23248319 original size:26 final size:26
Alignment explanation
Indices: 23248289--23248341 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23248279 GTTGACTTAG
23248289 GCATACAGAGTTCA-TCGTCAGTCTAA
1 GCATACAGAGTTCATTC-TCAGTCTAA
*
23248315 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
23248341 G
1 G
23248342 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:23253449 original size:26 final size:26
Alignment explanation
Indices: 23253413--23253491 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
23253403 GTTGACTTAG
*
23253413 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23253439 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
23253465 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23253491 G
1 G
23253492 ATCGGATCAA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23254049 original size:317 final size:314
Alignment explanation
Indices: 23253465--23254284 Score: 1052
Period size: 317 Copynumber: 2.6 Consensus size: 314
23253455 CCCAGTCTAA
* * * * * *
23253465 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCA-AACTGAGGGTTGCGATAGTAGGAACGGT
1 GCATACGGATTTCATTCCCAGTCTAAGATCAGACCAGAAC-GAGGGTTGCGATAGTAGGATCGAT
* * *
23253529 AGCACGTAGGGGGGACCGGGTTGATCTCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCAC
65 AGCACGTAGGGGGGACCGGG-TGATC-CCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAACAC
* *
23253594 CCGCACGTCTGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAGTCG
128 CCGCACG-CTGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * *
23253659 GACCGAGGGTCGTGGTAGCGGGACTGGAAGCATGCAGAGGGGGACCCGGCCAATCCTCGACTTAC
192 GACCAAGGGTCGTGGCAGCGAGACTGGAAGCATGAAGAGGGGGACCCGGCCAATCCTCGACTTAC
* * * *
23253724 GTATTATGCCTCTTTGGCCGACTCAGCGCCCGGACACTCATTTCGTGGGTTGACTTAT
257 GCATTATGCCTCTTCGACCGACTCAGCGCCCGCACACTCATTTCGTGGGTTGACTTAT
* * * *
23253782 GCATACGAATTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATCGATA
1 GCATACGGATTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGATAGTAGGATCGATA
** * * * * ** *
23253847 GCACACAAGTGGGATCGGGCTGATCCCTGGCTTGCGCATTCTATCTCTCTGGTCGGCTGAACACC
66 GCACGTAGGGGGGACCGGG-TGATCCC-GACTTGCGCATTCTGCCTCTCCGGTCGGCTGAACACC
* * *
23253912 CGCATGCCTGTTTCGTGGGTTTGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
129 CGCACG-CTGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * * *
23253977 ACCAAGGGTTGTGGCAGCGAGACTGGCAGCATGAAGAGGGGGACCGGGCCAATCCTCCG-CTTGC
193 ACCAAGGGTCGTGGCAGCGAGACTGGAAGCATGAAGAGGGGGACCCGGCCAATCCT-CGACTTAC
* * *
23254041 GCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACTCTCGTTTCGTGGGTTGACTTAT
257 GCATTATGCCTCTTCGACCGACTCAGCGCCCGCACACTCATTTCGTGGGTTGACTTAT
** * * *
23254099 GCATACGGATTTCATTCCCAGTCTAAGATCAGACCAGGCCAAGGGTTGCGGTAGTAGGATCGACA
1 GCATACGGATTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGATAGTAGGATCGATA
*
23254164 GCACGTAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCT-AAGCGC
66 GCACGTAGGGGGGACCGGGT-GAT-CCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAA-CAC
* * *
23254228 CTGTACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
128 CCGCACGCT-GTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
23254285 ATATGGGGTT
Statistics
Matches: 428, Mismatches: 68, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
316 7 0.02
317 414 0.97
318 7 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (314 bp):
GCATACGGATTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGATAGTAGGATCGATA
GCACGTAGGGGGGACCGGGTGATCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAACACCCG
CACGCTGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
AAGGGTCGTGGCAGCGAGACTGGAAGCATGAAGAGGGGGACCCGGCCAATCCTCGACTTACGCAT
TATGCCTCTTCGACCGACTCAGCGCCCGCACACTCATTTCGTGGGTTGACTTAT
Found at i:23254113 original size:159 final size:162
Alignment explanation
Indices: 23253554--23254285 Score: 546
Period size: 159 Copynumber: 4.6 Consensus size: 162
23253544 CCGGGTTGAT
* * * * *
23253554 CTCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACGTCT-GTTTCATGGGTT-A
1 CTCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTCAGCGCCCGCAC-TCTCGTTTCGTGGGTTGA
* * * * * * * *
23253617 GCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAG-TCGGACCGAGGGTCGTGGTAGCG-G
65 -CTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCAAGGGTTGCGGCAGCGAG
* * *
23253680 GACTGGA-AGCATGCAGAGGGGGACCCGGCCAATC
129 GA-TCGACAGCATGAAGAGGGGGACCGGGCCAATC
* * * * * * * *
23253714 CT-CGACTTACGTATTATGCCTCTTTGGCCGACTCAGCGCCCGGACACTCATTTCGTGGGTTGAC
1 CTCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTCAGCGCCCGCACTCTCGTTTCGTGGGTTGAC
* * * * * * * *
23253778 TTATGCATACGAATTTCATTCCCA-GTCTAAG-ATCAGACCAGATCGAGGGTTGCGACAGC-AGG
66 TTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCAAGGGTTGCGGCAGCGAGG
* * * * **
23253840 ATCGATAGCA-CACA-AGTGGGATCGGGCTGATC
130 ATCGACAGCATGA-AGAGGGGGACCGGGCCAATC
* * ** * * * *
23253872 C-CTGGCTTGCGCATTCTATCTC-TCTGGTCGGCTGAACACCCGCA-TGC-CTGTTTCGTGGGTT
1 CTCCGACTTGCGCATTCTGCCTCTTC-GGCCGGCTCAGCGCCCGCACT-CTC-GTTTCGTGGG-T
* * *
23253933 TG-CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGCG
62 TGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCAAGGGTTGCGGCAGCG
*
23253996 A-GA-CTGGCAGCATGAAGAGGGGGACCGGGCCAATC
127 AGGATC-GACAGCATGAAGAGGGGGACCGGGCCAATC
* *
23254031 CTCCG-CTTGCGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACTCTCGTTTCGTGGGTTGAC
1 CTCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTCAGCGCCCGCACTCTCGTTTCGTGGGTTGAC
* * * * *
23254095 TTATGCATACGGATTTCATTCCCA-GTCTAAG-ATCAGACCAGG-CCAAGGGTTGCGGTAG-TAG
66 TTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACC-GGACCAAGGGTTGCGGCAGCGAG
* * * *
23254156 GATCGACAGCACGTAG-GGGGGACCGGGTCGATC
129 GATCGACAGCATGAAGAGGGGGACCGGGCCAATC
* * * * * * *
23254189 C-CCGACTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCCTGTACGCTCGTTTCATGGGTT-AG
1 CTCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTCAGCGCCCGCACTCTCGTTTCGTGGGTTGA-
23254252 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
23254286 TATGGGGTTC
Statistics
Matches: 438, Mismatches: 102, Indels: 65
0.72 0.17 0.11
Matches are distributed among these distances:
157 13 0.03
158 203 0.46
159 204 0.47
160 18 0.04
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (162 bp):
CTCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTCAGCGCCCGCACTCTCGTTTCGTGGGTTGAC
TTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCAAGGGTTGCGGCAGCGAGGA
TCGACAGCATGAAGAGGGGGACCGGGCCAATC
Found at i:23254242 original size:158 final size:158
Alignment explanation
Indices: 23253465--23254283 Score: 565
Period size: 158 Copynumber: 5.2 Consensus size: 158
23253455 CCCAGTCTAA
* * ** * * * * **
23253465 GCATACGGAGTTCATTCC-TAGTCTAAGATCGGATCAAACTGAGGGTTGCGATAGTAGGAACGGT
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCAGGCCGAGGGTTGCGGTAGCAGGATCGAC
* ** * * * *
23253529 AGCACGTAGGGGGGACCGGGTTGATCTCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCAC
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCGC
*
23253594 CCGCACG-TCTGTTTCATGGGTT-AGCTTAG
130 CCGCACGCTC-GTTTCGTGGGTTGA-CTTAG
* * ** * * * * *
23253623 GCATAGGGAGTTCATTCCATGTTTAAGCCCCAG-TC-GGACCGAGGGTCGTGGTAGCGGGACTGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGG-CCGAGGGTTGCGGTAGCAGGA-TCG
* * * * * * * ** * *
23253686 A-AGCATGCAGAGGGGGACCCGGCCAATCCTCGACTTACGTATTATGCCTCTTTGGCCGACTCAG
63 ACAGCACGCAG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTAAG
* * * *
23253750 CGCCCGGACACTCATTTCGTGGGTTGACTTAT
127 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** ** *
23253782 GCATACGAATTTCATTCCCA-GTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGGCCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * * * ** * * *
23253846 AGCACACAAGTGGGATCGGGCTGATCCCTGGCTTGCGCATTCTATCTCTCTGGTCGGCTGAA-CA
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCT-AAGCG
*
23253910 CCCGCATGC-CTGTTTCGTGGGTTTG-CTTAG
129 CCCGCACGCTC-GTTTCGTGGG-TTGACTTAG
* ** * * *
23253940 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CC-GGACCAAGGGTTGTGGCAGC-GAGA-CT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGG-CCGAGGGTTGCGGTAGCAG-GATC-
* * * * * * * *
23254001 GGCAGCATGAAGAGGGGGACCGGGCCAATCCTCCG-CTTGCGCATTATGCCTCTTCGACCGGCTC
62 GACAGCACGCAG-GGGGGACCGGGCCGATCC-CCGACTTGCGCATTCTGCCTCTCCGGCCGGCTA
* *
23254065 AGCGCCCGCACTCTCGTTTCGTGGGTTGACTTAT
125 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
23254099 GCATACGGATTTCATTCCCA-GTCTAAGATCAGACCAGGCCAAGGGTTGCGGTAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGGCCGAGGGTTGCGGTAGCAGGATCGAC
* * *
23254163 AGCACGTAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGC
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCGC
* * *
23254228 CTGTACGCTCGTTTCATGGGTT-AGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGA-CTTAG
23254257 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
23254284 CATATGGGGT
Statistics
Matches: 494, Mismatches: 135, Indels: 64
0.71 0.19 0.09
Matches are distributed among these distances:
157 14 0.03
158 246 0.50
159 217 0.44
160 17 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGGCCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:23255514 original size:159 final size:159
Alignment explanation
Indices: 23255187--23255691 Score: 409
Period size: 159 Copynumber: 3.2 Consensus size: 159
23255177 CCCAGTTTAT
* * * * * * * *
23255187 GCATATGGAGTTCATGCCCA-GTCTAAGATCAGATCGGACCGAGGGTTACAGCAGTTA-GATCGG
1 GCATACGGAGTTCAT-TCCATGTCTAAGACCAGACCAGACCGAGGGTTACGGCAG-CAGGATCGA
* * * * * * * * * ** * *
23255250 TAGCACGC-AGGGGGGAACGAGCCGATCCCCGGCTTGCGCATTCTACCTTTCCGA-CAGGTTGAA
64 CAGCACGCAAGGGGGGACCGGGCCAATCCTCGACTTGTGCATTATACCTCTCCGATC-GACTCAG
*
23255313 CGCACGCACACCT-GTTTCATGGGTTGGCTTAG
128 CGCCCGCAC-CCTCGTTTCATGGGTTGGCTTAG
* * * ** *
23255345 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCAGACCGAGGGTTACGGCAGCAGGATCGAC
* * * * * * * *
23255409 AGCACGC-AGATGGGGACCGGTCCGATCC-CAGGCTTGTGCATTATGCCTTTTCGATCGGCTCAG
65 AGCACGCAAG-GGGGGACCGGGCCAATCCTC-GACTTGTGCATTATACCTCTCCGATCGACTCAG
* * * *
23255472 TGCCCGCACGCTCGTTTCATGGGTTGACTTAT
128 CGCCCGCACCCTCGTTTCATGGGTTGGCTTAG
* * * *
23255504 GCACACGGAGTTCATTCC-TAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAGGATCGAT
1 GCATACGGAGTTCATTCCAT-GTCTAAGACCAGACCAGACCGAGGGTTACGGCAGCAGGATCGAC
* * * *
23255568 AGCACGCAAGGGGGGATCGGGCCAATCCTCGACTTGTGCATTCTACCTCTCCGGTCGACTGAGCG
65 AGCACGCAAGGGGGGACCGGGCCAATCCTCGACTTGTGCATTATACCTCTCCGATCGACTCAGCG
*
23255633 CCCGCACCCTCGTTTCGTGGGTTTGGCTTAG
130 CCCGCACCCTCGTTTCATGGG-TTGGCTTAG
23255664 GCATACGGAGTTCATTTCCA-GTCTAAGA
1 GCATACGGAGTTCA-TTCCATGTCTAAGA
23255692 TTTTGAGCCA
Statistics
Matches: 277, Mismatches: 56, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.01
158 59 0.21
159 179 0.65
160 32 0.12
161 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
GCACGCAAGGGGGGACCGGGCCAATCCTCGACTTGTGCATTATACCTCTCCGATCGACTCAGCGC
CCGCACCCTCGTTTCATGGGTTGGCTTAG
Found at i:23256603 original size:159 final size:159
Alignment explanation
Indices: 23256424--23256734 Score: 403
Period size: 159 Copynumber: 2.0 Consensus size: 159
23256414 ATGGGACCGG
* * * * *
23256424 CAGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTT-ATGTATTATGCCTATCCGGCCGTCTCAG
1 CAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGA-GCATTATGCATATCCGGCCGGCTCAA
* *
23256488 CG-CTCGCACACTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAA
65 CGTCT-GCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAACATCAA
*
23256552 ATCAGACTGAGGGTTGCGGCAGCAAGATCGA
129 ATCAGACCGAGGGTTGCGGCAGCAAGATCGA
* * * *
23256583 CAGCACGCAG-GGGGGTATCGGGCCGATCCCCGGCTTGAGCATTCTGCATCTCTGGCCGGCTGAA
1 CAGCACGCAGAGGGGG-ATCGGGCCGATCCCCGGCTTGAGCATTATGCATATCCGGCCGGCTCAA
* * * ***
23256647 CGTCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATTTAACATTGGA
65 CGTCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAACATCAAA
*
23256712 TCGGACCGAGGGTTGCGGCAGCA
130 TCAGACCGAGGGTTGCGGCAGCA
23256735 GGTCCAGCAG
Statistics
Matches: 130, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
158 5 0.04
159 122 0.94
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
CAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGAGCATTATGCATATCCGGCCGGCTCAAC
GTCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAACATCAAAT
CAGACCGAGGGTTGCGGCAGCAAGATCGA
Found at i:23256887 original size:170 final size:171
Alignment explanation
Indices: 23256577--23256906 Score: 371
Period size: 170 Copynumber: 1.9 Consensus size: 171
23256567 GCGGCAGCAA
* * * *
23256577 GATCGACAGCACGCAGGGGGGTATCGGGCCGATCCCCGGCTTGAGCATTCTGCATCTCTGGCCGG
1 GATCGACAACACGCAAGGGGGTATCGGGCCAATCCCCGGCTTGAGCATTCTGCATCTCCGGCCGG
** ** *
23256642 CTGAACGTCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATTTAACA
66 CTGAACACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATTTAACA
**** * *
23256707 TTGGATCGGACCGAGGGTTGCGGCAGCAGGTCCAGCAGTAG
131 CCCAATCGGACCGAAGGTTGCGGCAACAGGTCCAGCAGTAG
* * * * * *
23256748 GATCGACAACCCGCAAGGGGG-ATCGGGCTAATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGG
1 GATCGACAACACGCAAGGGGGTATCGGGCCAATCCCCGGCTTGAGCATTCTGCATCTCCGGCCGG
* * *
23256812 CTGAGCACCCATACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCGTT-CC-ATGTCTAA
66 CTGAACACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAAT-T-TAA
* *
23256875 GC-CCCAATCGGACTGAAGGTTGTGGCAACAGG
129 -CACCCAATCGGACCGAAGGTTGCGGCAACAGG
23256907 ACCGGTAGCA
Statistics
Matches: 130, Mismatches: 26, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
168 2 0.02
169 3 0.02
170 106 0.82
171 19 0.15
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (171 bp):
GATCGACAACACGCAAGGGGGTATCGGGCCAATCCCCGGCTTGAGCATTCTGCATCTCCGGCCGG
CTGAACACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATTTAACA
CCCAATCGGACCGAAGGTTGCGGCAACAGGTCCAGCAGTAG
Found at i:23257058 original size:26 final size:26
Alignment explanation
Indices: 23257022--23257072 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23257012 TGACTTAGGT
23257022 ATACAGAGTTCA-TCCCAAGTCTAAGC
1 ATACAGAGTTCATTCCC-AGTCTAAGC
*
23257048 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
23257073 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:23257356 original size:159 final size:158
Alignment explanation
Indices: 23257047--23257549 Score: 480
Period size: 158 Copynumber: 3.2 Consensus size: 158
23257037 CAAGTCTAAG
* * * * * *
23257047 CATACGGAGTTCATTCCCA-GTCTAAG-ATCGGATCGGACCGAAGGTTGCGGCAGCAGGATCGGC
1 CATACAGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * * *
23257110 AGCACGTAGGAGGGACCGGGCCGATCTTCGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAGTGC
65 AGCACG-AGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCCGACTGAGTGC
* **
23257175 CCGCACGC-CCATTCTGTGGGTTGGCTTAGT
129 CCGCACACTCGTTTC-GTGGGTTGGCTTAGT
** * * * *
23257205 CATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGTAGGACCGGCA
1 CATACAGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
23257269 GCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGTGCATTATGCCTCTTCAGCCGACTCAATGC
66 GCACG-AG-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCCGACTGAGTGC
* *
23257334 CCGCACACTCGTTTCATGGGTTGACTTA-T
129 CCGCACACTCGTTTCGTGGGTTGGCTTAGT
* * * *
23257363 GCATACAGAGTTCAGTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGA
1 -CATACAGAGTTCA-TTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGG
* * * * * *
23257426 TAGCACGATGGGGGGACTGGGCCGATCCCCAGCTTACGCATTATGCCTCTTCGGCCGACTGAGCG
64 CAGCACGA-GGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCCGACTGAGTG
** * * *
23257491 CTTGCACACTTGTTTTGTGGGTTGGCTTAGG
128 CCCGCACACTCGTTTCGTGGGTTGGCTTAGT
*
23257522 CATACAAAGTTCATTCCATGTCTAAGCA
1 CATACAGAGTTCATTCCATGTCTAAGCA
23257550 TACGGAGTTC
Statistics
Matches: 276, Mismatches: 58, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
157 7 0.03
158 146 0.53
159 115 0.42
160 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
CATACAGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
GCACGAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCCGACTGAGTGCCC
GCACACTCGTTTCGTGGGTTGGCTTAGT
Found at i:23259041 original size:158 final size:158
Alignment explanation
Indices: 23258749--23259041 Score: 369
Period size: 158 Copynumber: 1.9 Consensus size: 158
23258739 GCTCATGACA
* * *
23258749 CCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCATGCTCATTTCGTGGGTTGACT
1 CCCAGCTTGCGCATTATGCCTCTCCGGTCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGACT
* * * * * * *
23258814 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTATGACAGTAGGATCG
66 TAGGCATACGAAGTTCATTCCCAGTCTAAGACCAGACCAGATCAAGGGTTATGACAGCAGGACCA
23258879 ACAGCACGCAGGGGGGACCGTATCGATC
131 ACAGCACGCAGGGGGGACCGTATCGATC
* * * *
23258907 CCCAGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCT
1 CCCAGCTTGCGCATTATGCCTCTCCGGTCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGACT
* * *
23258972 TAGGCATAC-AGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGA-CTAAGGGTTGTGATAGCAGG
66 TAGGCATACGA-AGTTCATTCCCA-GTCTAAG-ACCAGACCAGATC-AAGGGTTATGACAGCAGG
23259033 ACCAACAGC
127 ACCAACAGC
23259042 GGGATCGATA
Statistics
Matches: 114, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
157 5 0.04
158 107 0.94
159 2 0.02
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.23
Consensus pattern (158 bp):
CCCAGCTTGCGCATTATGCCTCTCCGGTCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGACT
TAGGCATACGAAGTTCATTCCCAGTCTAAGACCAGACCAGATCAAGGGTTATGACAGCAGGACCA
ACAGCACGCAGGGGGGACCGTATCGATC
Found at i:23259196 original size:26 final size:26
Alignment explanation
Indices: 23259159--23259209 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23259149 GTTGACTTAG
*
23259159 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
23259185 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
23259210 TGATCAGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:23259475 original size:159 final size:158
Alignment explanation
Indices: 23259271--23259688 Score: 491
Period size: 159 Copynumber: 2.6 Consensus size: 158
23259261 GGATTGGGCC
* * *
23259271 GATCCCCGGCTTGCGCATTCTACCTTTCCGGTCGGTTGAGTGCCCGCACGCCCATTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTCTACCTTT-CGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTT
* * * *
23259336 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGAACTGAGGGTTGTGGCAGCGG
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACTGAGAGTTGTGGCAGCAG
23259400 GACCGACAGCACACAGAGGGGGACCGAGCT
130 GACCGACAGCACACAG-GGGGGACCGAGCT
* * * *
23259430 GATCCCTGGCTTGCGCATTATGCCTATTCGGTCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTCTACCT-TTCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTT
** ** * * ** * *
23259495 TACTTTTGCATACGGAGTTCATGCCCA-GTCTAAG-ATCAGATTGAATTGAGAGTTGTGGCAGTA
65 GGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCACCAGACCGAACTGAGAGTTGTGGCAGCA
* * * ** *
23259558 GGATCGATAGTACGTAGGGGGGACCGGGCT
129 GGACCGACAGCACACAGGGGGGACCGAGCT
* * * *
23259588 GATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTCTACCT-TTCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTT
23259653 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
23259689 TACGGAGTTC
Statistics
Matches: 213, Mismatches: 41, Indels: 10
0.81 0.16 0.04
Matches are distributed among these distances:
157 3 0.01
158 96 0.45
159 109 0.51
160 5 0.02
ACGTcount: A:0.17, C:0.28, G:0.30, T:0.25
Consensus pattern (158 bp):
GATCCCCGGCTTGCGCATTCTACCTTTCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACTGAGAGTTGTGGCAGCAGG
ACCGACAGCACACAGGGGGGACCGAGCT
Found at i:23259639 original size:158 final size:156
Alignment explanation
Indices: 23259185--23259686 Score: 536
Period size: 158 Copynumber: 3.2 Consensus size: 156
23259175 CCTAGTCTAA
* * * * * * *
23259185 GCATACGAAGTTCATTCCCAGTCTATGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGGTA
1 GCATACGGAGTTCA-TCCCAGTCTAAGATCAGACGA-ATTGAGGGTTGTGGCAGCAGGATCGATA
** * * * *
23259250 GCACGCAGGGGGGATTGGGCCGATCCCCGGCTTGCGCATTCTACCTTTCCGGTCGGTTGAGTGCC
64 GCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTACCTATCCGGTCGGCTGAGCGCC
*
23259315 CGCACGCCCATTTCGTGGGTTGGCTTAG
129 CGCACGCTCATTTCGTGGGTTGGCTTAG
* * ** * * * * *
23259343 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTGAGGGTTGTGGCAGCGGGACCGACA
1 GCATACGGAGTTCATCCCA-GTCTAAG-ATCAGACGAATTGAGGGTTGTGGCAGCAGGATCGATA
* * * * * * *
23259408 GCACACAGAGGGGGACCGAGCTGATCCCTGGCTTGCGCATTATGCCTATTCGGTCGGCTCAGCGC
64 GCACGCAG-GGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTACCTATCCGGTCGGCTGAGCGC
** **
23259473 CCGCACGCTCATTTCGTGGGTTTACTTTT
128 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* * *
23259502 GCATACGGAGTTCATGCCCAGTCTAAGATCAGATTGAATTGAGAGTTGTGGCAGTAGGATCGATA
1 GCATACGGAGTTCAT-CCCAGTCTAAGATCAGA-CGAATTGAGGGTTGTGGCAGCAGGATCGATA
* * * * *
23259567 GTACGTAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCC
64 GCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTACCTATCCGGTCGGCTGAGCGCC
*
23259632 CGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCATTTCGTGGGTTGGCTTAG
*
23259660 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATCCCA-GTCTAAG
23259687 CATACGGAGT
Statistics
Matches: 274, Mismatches: 64, Indels: 12
0.78 0.18 0.03
Matches are distributed among these distances:
157 7 0.03
158 141 0.51
159 123 0.45
160 3 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATCCCAGTCTAAGATCAGACGAATTGAGGGTTGTGGCAGCAGGATCGATAGC
ACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTACCTATCCGGTCGGCTGAGCGCCCG
CACGCTCATTTCGTGGGTTGGCTTAG
Found at i:23259696 original size:26 final size:26
Alignment explanation
Indices: 23259660--23259712 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23259650 GTTGGCTTAG
23259660 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23259686 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23259712 G
1 G
23259713 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23260420 original size:26 final size:26
Alignment explanation
Indices: 23260383--23260435 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23260373 GTTGACTTAG
23260383 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
23260409 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
23260435 G
1 G
23260436 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:23260717 original size:159 final size:158
Alignment explanation
Indices: 23260443--23260743 Score: 377
Period size: 159 Copynumber: 1.9 Consensus size: 158
23260433 AAGATCAGAC
* * * * *
23260443 CGGATCGAGGGTTGCGGTAGCAAGATCGACAGCACGCATGGGGGACCGGGCCGATCCTCGACTTA
1 CGGATCGAGGGTTGCGGCAGCAAGACCGACAGCACGAAAGGGGGACCGGACCGATCCTCGACTTA
* * * ** * *
23260508 GGAATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
66 CGAATTATGCCTCTCCGGCCGGCTCAGCACCCGCACGCCCATTTCGTGGGTTGACTTAGGCATAG
23260573 GGAGTTCATTCCATGTCTAAGCCCCAGT
131 GGAGTTCATTCCATGTCTAAGCCCCAGT
* * * *
23260601 CGGATTGAGGGTTGTGGCAGCAGGACCGACAGCACGTAAAGGTGGACCGGACCGATCCTCGACTT
1 CGGATCGAGGGTTGCGGCAGCAAGACCGACAGCACG-AAAGGGGGACCGGACCGATCCTCGACTT
* * * * * *
23260666 ACGCATTATGCCTCTTCGGTCGGCTCAGCACCCGCACGCTCATTTCTTGGGTTGACTTATGCATA
65 ACGAATTATGCCTCTCCGGCCGGCTCAGCACCCGCACGCCCATTTCGTGGGTTGACTTAGGCATA
* *
23260731 TGGAGTTTATTCC
130 GGGAGTTCATTCC
23260744 CAGATCGAGG
Statistics
Matches: 118, Mismatches: 24, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
158 31 0.26
159 87 0.74
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.24
Consensus pattern (158 bp):
CGGATCGAGGGTTGCGGCAGCAAGACCGACAGCACGAAAGGGGGACCGGACCGATCCTCGACTTA
CGAATTATGCCTCTCCGGCCGGCTCAGCACCCGCACGCCCATTTCGTGGGTTGACTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGT
Found at i:23260969 original size:148 final size:149
Alignment explanation
Indices: 23260762--23261043 Score: 377
Period size: 148 Copynumber: 1.9 Consensus size: 149
23260752 GGGTTGTAGT
* *
23260762 AGCAGGATCAACAGCACGTATGGGGGGATTGGGTCGATCCCCGGCTTGTACATTCTGCCTCTCCG
1 AGCAGGATCAACAGCACGCATGGGGGGATCGGGTCGATCCCCGGCTTGTACATTCTGCCTCTCCG
* * ** * *
23260827 ACCGACTGAGCGCCCATACGCTTATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATTTC
66 ACCGACTGAGCACCCATAAGCCCATTTCATGGGTTGGCTTAAGCATACAGAGTTCATTCCATGTC
23260892 TAAGATCATTGACTTAGGC
131 TAAGATCATTGACTTAGGC
* * * *
23260911 AGCAGGATCGACAGCACGCA-GGGGGGATCGGGTCGATCCCCGGCTTGTGCATTTTGCCTCTCTG
1 AGCAGGATCAACAGCACGCATGGGGGGATCGGGTCGATCCCCGGCTTGTACATTCTGCCTCTCCG
* ** * * * **
23260975 GCCGGTTGAGCATCCGTAAGCCCATTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTC
66 ACCGACTGAGCACCCATAAGCCCATTTCATGGGTTGGCTTAAGCATACAGAGTTCATTCCATGTC
23261040 TAAG
131 TAAG
23261044 CCCCAGTCGG
Statistics
Matches: 113, Mismatches: 20, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
148 95 0.84
149 18 0.16
ACGTcount: A:0.20, C:0.25, G:0.28, T:0.27
Consensus pattern (149 bp):
AGCAGGATCAACAGCACGCATGGGGGGATCGGGTCGATCCCCGGCTTGTACATTCTGCCTCTCCG
ACCGACTGAGCACCCATAAGCCCATTTCATGGGTTGGCTTAAGCATACAGAGTTCATTCCATGTC
TAAGATCATTGACTTAGGC
Found at i:23261359 original size:159 final size:158
Alignment explanation
Indices: 23260908--23261363 Score: 454
Period size: 159 Copynumber: 2.9 Consensus size: 158
23260898 CATTGACTTA
* * *
23260908 GGCAGCAGGATCGACAGCACGCAGGGG-GGATCGGGTCGATCCCCGGCTTGTGCATTTTGCCTCT
1 GGCAGCAGGATCGACAGCACGCAGGGGAGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCT
* ** * * *
23260972 CTGGCCGGTTGAGCATCCGTA-AGCCCATTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCA
66 CTGGCCGGCTGAGCGCCCGCACA-CTCATTTCGTGGGTTGGCTTAAGCATACGGAGTTCATT-CA
* * *
23261036 TGTCTAAGCCCCAGTCGGACTGAGGGTTGT
129 TGTCTAAGCACCAGCCGGACCGAGGGTTGT
* * * * * * * *
23261066 TGTAGCGGGACCGGCAGCACGCA-GAGAGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTC
1 GGCAGCAGGATCGACAGCACGCAGGGGA-GGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTC
* * * * * * * * *
23261130 T-TCGACTGGCTTAGTGCCTGCACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC
65 TCT-GGCCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCA
*
23261194 TAGTCTAAG-ATCAGACCGGACCGAGGGTTGT
129 T-GTCTAAGCACCAG-CCGGACCGAGGGTTGT
* * ** * * *
23261225 GGCAGCAAGATCGACAACACATAGGGGAGGATCGGGCCGATCCCCGGCTTGGGCATTCTACCTCT
1 GGCAGCAGGATCGACAGCACGCAGGGGAGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCT
** *
23261290 CTGGCCGGCTGAGCGCCCGCACACTCATTTCGTTAGTTGGCTTAGGCATACGGAGTTCATTCAAT
66 CTGGCCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTC-AT
23261355 GTCTAAGCA
130 GTCTAAGCA
23261364 TACGGAGTTC
Statistics
Matches: 232, Mismatches: 56, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 24 0.10
159 200 0.86
160 6 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GGCAGCAGGATCGACAGCACGCAGGGGAGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCT
CTGGCCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCATG
TCTAAGCACCAGCCGGACCGAGGGTTGT
Found at i:23262114 original size:26 final size:26
Alignment explanation
Indices: 23262078--23262130 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23262068 GTTGACTTAG
*
23262078 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
23262104 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23262130 G
1 G
23262131 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23262993 original size:26 final size:26
Alignment explanation
Indices: 23262957--23263009 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23262947 GTTGACTTAG
23262957 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
*
23262983 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23263009 G
1 G
23263010 ATTAGGCCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23263324 original size:159 final size:159
Alignment explanation
Indices: 23263121--23263486 Score: 429
Period size: 159 Copynumber: 2.3 Consensus size: 159
23263111 CCTGCATGCC
* * *
23263121 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACTGAGG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGG
***
23263185 GTTGTGGCAGCAGGACCGACAGCAT-ACAGAGGGGGA-TCGGGTCGATCCTCGA-CTTACGCATG
66 GTTACAGCAGCAGGACCGACAGCATGA-AGAGGGGGACT-GGGTCGATCC-CGAGCTTACGCATG
* * *
23263247 ATGCCTCTTCGGCCGGCTCAACGCCCGCACACT
128 ATGCCTCTTCGGCC-ACTCAACACCCACACACT
* * * * *
23263280 CGTTTCGTGGGTTGACTTATGCATACGTAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAG
* * * **
23263343 GGTTACAGCAGCAGGATCGACAGCATGAAGAGGGGGACTGGGTCGATCCCTAGCTTGCGCATTCT
65 GGTTACAGCAGCAGGACCGACAGCATGAAGAGGGGGACTGGGTCGATCCCGAGCTTACGCATGAT
* * *
23263408 GCCTCTTTGGCCACTGAGCACCCACACACT
130 GCCTCTTCGGCCACTCAACACCCACACACT
* *
23263438 CATTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCA
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
23263487 TACGGAGTTC
Statistics
Matches: 172, Mismatches: 28, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
157 3 0.02
158 55 0.32
159 109 0.63
160 5 0.03
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (159 bp):
CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGG
GTTACAGCAGCAGGACCGACAGCATGAAGAGGGGGACTGGGTCGATCCCGAGCTTACGCATGATG
CCTCTTCGGCCACTCAACACCCACACACT
Found at i:23263490 original size:26 final size:26
Alignment explanation
Indices: 23263460--23263510 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23263450 TGGCTTAGGT
23263460 ATACGGAGTTCATTCC-ATGTCTAAGC
1 ATACGGAGTTCATTCCTA-GTCTAAGC
23263486 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCTAGTCTAAG
23263511 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCTAGTCTAAGC
Found at i:23263886 original size:26 final size:26
Alignment explanation
Indices: 23263856--23263908 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23263846 GTTGACTTAG
23263856 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
23263882 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
23263908 G
1 G
23263909 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:23266883 original size:20 final size:20
Alignment explanation
Indices: 23266858--23266898 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
23266848 CAATGTGACC
23266858 GAGAAAATGGATTTGGGTCT
1 GAGAAAATGGATTTGGGTCT
23266878 GAGAAAATGGATTTGGGTCT
1 GAGAAAATGGATTTGGGTCT
23266898 G
1 G
23266899 TGCCAACATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.05, G:0.37, T:0.29
Consensus pattern (20 bp):
GAGAAAATGGATTTGGGTCT
Found at i:23269381 original size:26 final size:26
Alignment explanation
Indices: 23269345--23269395 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
23269335 GTTGACTTCG
23269345 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23269371 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
23269396 TGATCGGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23269914 original size:159 final size:155
Alignment explanation
Indices: 23269371--23269922 Score: 409
Period size: 158 Copynumber: 3.5 Consensus size: 155
23269361 CCCAGTCTAA
* * *
23269371 GCATACGGAGTTCATTCCCAGTCTATGATCGGATCGAACCGAGGGTTACGGCTA-CAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTACGAC-AGCAGGATCGAC
* * *
23269435 AGCACGTAGGGGGGACCGGGCTGATCCCTAGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGC
65 AGCACGAAAGGGGGACCGGGC-GATCCC-AGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCAC
* * ** * *
23269500 TCGCACGCTCATTTTATGGGCTGACTTGG
128 TCGCA-GGTCGTTTCGTGGGTTGACTTAG
** * * * * *
23269529 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATC-AGACCAAGGGTTGCGATAGCAGGATTGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTTACGACAGCAGGATCGAC
* * * * * * ** *
23269593 AGCACG-TAGAGGGGACCGAGCCGATCCCCGACTTGCACATTATGCCTCTCCAGCCGATTGAGCA
65 AGCACGAAAG-GGGGACCG-GGCGATCCCAG-CTTGCGCATTATGCCTCTTCGGCCGGCTCAGCA
* * *
23269657 -TCGACACGCCTGTTTCGTGGGTTGGCTTAG
127 CTCG-CAGGTC-GTTTCGTGGGTTGACTTAG
* ** * ** ** * * *
23269687 GCATAAGGAGTTCATT-CCATGTCTAAGCCCCA-ATCGGATTGAGGGTTGTGGCAG-TGAGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGAACCGAGGGTTACGACAGCAG-GATCG
** * * *
23269749 GTAGCACGCAAAGGGGGATCGGGTCGATCCTCAGGTTGCGCATTATGCCTCTTCGGTCGGCTCAG
63 ACAGCACG-AAAGGGGGACCGGG-CGATCC-CAGCTTGCGCATTATGCCTCTTCGGCCGGCTCAG
* * *
23269814 CACCCGCATGGTCGTTTCGTGGGTTAACTTAT
125 CACTCGCA-GGTCGTTTCGTGGGTTGACTTAG
* * *
23269846 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACTGAGGGTTACGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTACGACAGCAGGATCGACA
*
23269911 GCAC-ATAGGGGG
66 GCACGAAAGGGGG
23269923 GGACTGGGTC
Statistics
Matches: 297, Mismatches: 77, Indels: 41
0.72 0.19 0.10
Matches are distributed among these distances:
157 19 0.06
158 162 0.55
159 105 0.35
160 11 0.04
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTACGACAGCAGGATCGACA
GCACGAAAGGGGGACCGGGCGATCCCAGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCACTCG
CAGGTCGTTTCGTGGGTTGACTTAG
Found at i:23270178 original size:26 final size:26
Alignment explanation
Indices: 23270149--23270200 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23270139 GTTGGCTTAG
*
23270149 GCATACGAAGTTTATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
*
23270175 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
23270201 AATCGGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:23271528 original size:26 final size:26
Alignment explanation
Indices: 23271498--23271550 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23271488 GTTGACTTAG
23271498 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
23271524 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23271550 G
1 G
23271551 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23272064 original size:26 final size:26
Alignment explanation
Indices: 23272024--23272076 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23272014 GTTGATTTAG
*
23272024 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
**
23272050 GCATACGGAGCTCATTGCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
23272076 G
1 G
23272077 ATCAGATCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAGTCTAA
Found at i:23272203 original size:526 final size:527
Alignment explanation
Indices: 23271464--23272578 Score: 1260
Period size: 526 Copynumber: 2.2 Consensus size: 527
23271454 CGGCTGGTTG
* *
23271464 AGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
1 AGCACCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* * * ** * * * *
23271529 TGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
66 CGGAGCTCATTCCCAGTCTAAGATCAGACTAAACCGAGGGTTACGGCAACAGGATCGACAGCACA
** * * * * * *
23271594 CAGAGGGGAGTGGGTCGATCCTCGGCTTGCCCATTCTGCCTCTCTGGTCGACTAAGTGCCTGCAC
131 CAGAGGGGACCGGCTCGATCCCCAGCTTGCCCATTCTGCCTCTCCGATCGACTAAGTGCCCGCAC
** *
23271659 GCGTGTTTCATTGGTTGGCTTAGGCATAGGGACTTCATTCCATGTCTAAG-CCCAG-TCAGACCG
196 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGACTTCATTCCATGTCTAAGCCCCAGCT-AGACCG
* * ** ** * * * *
23271722 AGGGTTGTGGTAGCGA-GATCGGCAGCAGGCAGAGGGGGATCGGGTCGATTCCTGGCTTGCGCAT
260 AGGGTTGTGGCAG-GAGGACCAACAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCAT
* **
23271786 TATGACTCTCTGACCT-GCTCAGC-CTCCGGACGCTCATTTCGTGGGTTGACTTA-GGCATATGG
324 TATGACTCTCTG-CCTGGCTCAACGC-CCGGACGCTCATTTCGTGGGTTGACTTATGG-ATACAG
* *
23271848 AGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGACCAGTAGCAGGATC
386 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAGGACCAGTAGCAGGATC
23271913 GGTAGCACACAGGAGGGGACCGAGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGATCGGCCTC
451 GGTAGCACACAGGAGGGGACCGAGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGATCGGCCTC
23271978 TTCGGTCGGCTA
516 TTCGGTCGGCTA
** *
23271990 AGCACCCGCACGCTCGTTTTGTAGGTTGATTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
1 AGCACCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* * *
23272055 CGGAGCTCATTGCCAGTCTAAGATCAGA-TCAAACTGAGGGTTACGGTAACAGGATCGACAGCAC
66 CGGAGCTCATTCCCAGTCTAAGATCAGACT-AAACCGAGGGTTACGGCAACAGGATCGACAGCAC
* * *
23272119 ACAG-GGGGCACCGAGCT-GATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCG
130 ACAGAGGGG-ACCG-GCTCGATCCCCAGCTTGCCCATTCTGCCTCTCCGATCGACTAAGTGCCCG
* * *
23272182 CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGAC
193 CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGACTTCATTCCATGTCTAAGCCCCAGCTAGAC
* *
23272247 CGAGGGTTGTGGCAGTAGGACCAACAGCACATAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCA
258 CGAGGGTTGTGGCAGGAGGACCAACAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCA
* * * * **
23272312 TTATGCCTCTTTGGCTGGCTCAACGCCCGTACGCTTGTTTCGTGGGTTGACTTATGGATACAGAG
323 TTATGACTCTCTGCCTGGCTCAACGCCCGGACGCTCATTTCGTGGGTTGACTTATGGATACAGAG
* *
23272377 TTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGTAGG---A-T--CA--A-C--
388 TTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAGGACCAGTAGCAGGATCGG
* * * *
23272431 -AGCACACA-G-GGGGACCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGG------
453 TAGCACACAGGAGGGGACCGAGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGATCGGCCTCTT
23272487 C--T--G---
518 CGGTCGGCTA
* * * * * *
23272490 AGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGTCATACGGAGTTCAT-TCCATGTCTAAGCAT
1 AGCACCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCAT
*
23272554 ACGGAGTTCATTCCCAGTCTAAGAT
65 ACGGAGCTCATTCCCAGTCTAAGAT
23272579 TTTGAGCCAC
Statistics
Matches: 507, Mismatches: 72, Indels: 46
0.81 0.12 0.07
Matches are distributed among these distances:
499 3 0.01
500 76 0.15
503 1 0.00
505 1 0.00
507 1 0.00
513 43 0.08
514 1 0.00
515 8 0.02
518 1 0.00
519 1 0.00
521 2 0.00
523 1 0.00
524 1 0.00
525 5 0.01
526 205 0.40
527 153 0.30
528 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (527 bp):
AGCACCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
CGGAGCTCATTCCCAGTCTAAGATCAGACTAAACCGAGGGTTACGGCAACAGGATCGACAGCACA
CAGAGGGGACCGGCTCGATCCCCAGCTTGCCCATTCTGCCTCTCCGATCGACTAAGTGCCCGCAC
GCCCGTTTCATGGGTTGGCTTAGGCATAGGGACTTCATTCCATGTCTAAGCCCCAGCTAGACCGA
GGGTTGTGGCAGGAGGACCAACAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTA
TGACTCTCTGCCTGGCTCAACGCCCGGACGCTCATTTCGTGGGTTGACTTATGGATACAGAGTTC
ATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAGGACCAGTAGCAGGATCGGTAG
CACACAGGAGGGGACCGAGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGATCGGCCTCTTCGG
TCGGCTA
Found at i:23272535 original size:157 final size:157
Alignment explanation
Indices: 23272105--23272551 Score: 542
Period size: 159 Copynumber: 2.8 Consensus size: 157
23272095 TTACGGTAAC
* * * *
23272105 AGGATCGACAGCACACAGGGGGCACCGAGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCG
1 AGGATCAACAGCACACAGGGGG-ACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCG
* * * * *
23272170 GCTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
65 GCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAAG
**
23272235 CCCCAGCTGGACCGAGGGTTGTGGCAGT
130 CCCCAGCTGGACCGAGGGTTGCAGCAGT
* * * ** *
23272263 AGGACCAACAGCACATAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTTG-GC
1 AGGATCAACAGCAC--ACAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATC
* * * * * *
23272327 TGGCTCAACGCCCGTACGCTTGTTTCGTGGGTTGACTTA-TGGATACAGAGTTCATTCCCA-GTC
64 -GGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGT-CATACGGAGTTCATT-CCATGTC
** *
23272390 TAAG-ATCGGACTGGACCGAGGGTTGCAGCAGT
126 TAAGCCCCAG-CTGGACCGAGGGTTGCAGCAGT
* *
23272422 AGGATCAACAGCACACAGGGGGACCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGG
1 AGGATCAACAGCACACAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGG
*
23272487 CTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAAGC
66 CTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAAGC
23272552 ATACGGAGTT
Statistics
Matches: 238, Mismatches: 41, Indels: 20
0.80 0.14 0.07
Matches are distributed among these distances:
156 3 0.01
157 93 0.39
158 17 0.07
159 115 0.48
160 10 0.04
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
AGGATCAACAGCACACAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGG
CTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAAGC
CCCAGCTGGACCGAGGGTTGCAGCAGT
Found at i:23272554 original size:26 final size:26
Alignment explanation
Indices: 23272525--23272576 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23272515 TTGGCTTAGT
23272525 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
23272551 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
23272577 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:23273285 original size:26 final size:26
Alignment explanation
Indices: 23273249--23273299 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
23273239 TGACTTAGGT
* *
23273249 ATACGGAGTTC-TTCCCCAGTCTAAGC
1 ATACAGAGTTCATT-CCCAATCTAAGC
23273275 ATACAGAGTTCATTCCCAATCTAAG
1 ATACAGAGTTCATTCCCAATCTAAG
23273300 ATGAGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAATCTAAGC
Found at i:23273741 original size:158 final size:158
Alignment explanation
Indices: 23273273--23273774 Score: 518
Period size: 158 Copynumber: 3.2 Consensus size: 158
23273263 CCCAGTCTAA
* * *
23273273 GCATACAGAGTTCATTCCCA-ATCTAAGATGAGACCAGACCGAGGGTTACGATAGCAGGATCAGC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGATGGTTACGATAGCAGGATCAG-
* * * * * * * *
23273337 AA-CACGTAGGGGGGACCGGGCTGATCTTTGGCTTTCGTATTCTGCCTCTCAGGTCGGCTGAGCG
64 AAGCACGTAGGGGGGACCGAGCCGATCCTTGGCTTACGCATTATGCCTCTCCGATCGGCTGAGCG
23273401 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** ** ** *
23273431 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACC-ATGGATTGTGGCT-GCAGGA-CT
1 GCATACAGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGATGG-TT-ACGATAGCAGGATC-
* * * * * *
23273492 GGCAGCACGTAGAGGGGGATCGAGTCGATCCTTGACTTACGCATTATGCCTCTCCGATCGGCTCA
62 AGAAGCACGTAG-GGGGGACCGAGCCGATCCTTGGCTTACGCATTATGCCTCTCCGATCGGCTGA
* *
23273557 GCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
126 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
23273590 GCATACAGAGTTTATTCCCA-GTCTAAGATCAGACC-GAACCGATGGTTACGATAGCATGATC-G
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGACCAG-ACCGATGGTTACGATAGCAGGATCAG
** * * * *
23273652 ATAGCACGTAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTGTGCCTCTCCGACCGACTGAGC
64 A-AGCACGTAGGGGGGACCGAGCCGATCCTTGGCTTACGCATTATGCCTCTCCGATCGGCTGAGC
* *
23273717 GCCCGCACGCTCGTTTCGTAGGTTGGCTTGG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
23273748 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
23273775 CATACGGAGT
Statistics
Matches: 277, Mismatches: 52, Indels: 30
0.77 0.14 0.08
Matches are distributed among these distances:
157 11 0.04
158 142 0.51
159 116 0.42
160 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAGACCAGACCGATGGTTACGATAGCAGGATCAGAA
GCACGTAGGGGGGACCGAGCCGATCCTTGGCTTACGCATTATGCCTCTCCGATCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:23273800 original size:26 final size:26
Alignment explanation
Indices: 23273748--23273800 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23273738 GTTGGCTTGG
*
23273748 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
23273774 GCATACGGAGTTCATTCCAAGTTTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
23273800 G
1 G
23273801 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:23274622 original size:158 final size:158
Alignment explanation
Indices: 23274232--23274657 Score: 452
Period size: 159 Copynumber: 2.7 Consensus size: 158
23274222 CGCAGCGGGT
* * * * * * *
23274232 ACCG-GCTGATCGCCGGCTCGTGCGTTTTGCCTCTTCCGATCGGCTGAGCGCTCGTACACCCATT
1 ACCGAGCTGATC-CCGGCTTGTGCATTATGCCTC-TCCGACCGGCTGAGCGCCCGTACACTCGTT
* * * *
23274296 TCGTGGGTTGGCTTAGGCATAGGGACTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGT
64 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACTGAGGGTTGG
23274361 GGCAACGAGACCGACAGCACACAGAGGGGG
129 GGCAACGAGACCGACAGCACACAGAGGGGG
* * * * * * *
23274391 ACCGGGCCGATCCTTGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCGCCC-TCACGCTCGTT
1 ACCGAGCTGATCC-CGGCTTGTGCATTATGCCTCTCCGACCGGCTGAGCGCCCGT-ACACTCGTT
* * * *
23274455 TTGTGGGTTGACTTATGG-ATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGA-TCGAGGG
64 TCGTGGGTTGGCTTA-GGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCAGACT-GAGGG
* * * * *
23274516 TTGGGGGAGC-AGGATCGATAGCACACAGGGGGGG
125 TTGGGGCAACGA-GACCGACAGCACACAGAGGGGG
* * *
23274550 ATCGAGCTGATCCCGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCCCGTACACTCGTTTC
1 ACCGAGCTGATCCCGGCTTGTGCATTATGCCTCTCCGACCGGCTGAGCGCCCGTACACTCGTTTC
23274615 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
23274658 TACGGAGTTC
Statistics
Matches: 217, Mismatches: 38, Indels: 24
0.78 0.14 0.09
Matches are distributed among these distances:
157 5 0.02
158 81 0.37
159 105 0.48
160 26 0.12
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
ACCGAGCTGATCCCGGCTTGTGCATTATGCCTCTCCGACCGGCTGAGCGCCCGTACACTCGTTTC
GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACTGAGGGTTGGGG
CAACGAGACCGACAGCACACAGAGGGGG
Found at i:23274665 original size:26 final size:26
Alignment explanation
Indices: 23274629--23274681 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23274619 GTTGGCTTAG
23274629 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23274655 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23274681 G
1 G
23274682 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23275402 original size:26 final size:26
Alignment explanation
Indices: 23275352--23275404 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23275342 GTTGACTTAG
* *
23275352 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
23275378 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
23275404 G
1 G
23275405 ATTGAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:23275740 original size:159 final size:159
Alignment explanation
Indices: 23275576--23275880 Score: 346
Period size: 159 Copynumber: 1.9 Consensus size: 159
23275566 CAGTCGGACA
* * * * * * * *
23275576 GAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGG-GGGA-CTAGGTCGATCCCCGGCTTGCGC
1 GAGGGTTGGGGCAGCAGGACCGACAGCACGCA-AGGAGGGATC-AGGCCAACCCCCGACTTGCGC
* * * *
23275639 ATTATGCCTCTTCGGCCGGCTCAGCGCTCACACGCTCATTTCATGGGATGACTTAGGCATACGGA
64 ATTATACCTCTCCGGCCGGCTCAGCGCCCACACGCTCATTTCATGGGATGACTTAGGCATACAGA
23275704 GTTCATTCCCA-GTCTAAGATCGGATCGAACG
129 GTTCATT-CCATGTCTAAGATCGGATCGAACG
* * *
23275735 GAGGGTTGGGGCAGTAGGATCGACAGCACGCAAGGAGGGATCGGGCCAACCCCCGACTTGCGCAT
1 GAGGGTTGGGGCAGCAGGACCGACAGCACGCAAGGAGGGATCAGGCCAACCCCCGACTTGCGCAT
* ** * * * * * *
23275800 TCTACCTCTCCGGTGGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGT
66 TATACCTCTCCGGCCGGCTCAGCGCCCACACGCTCATTTCATGGGATGACTTAGGCATACAGAGT
23275865 TCATTCCATGTCTAAG
131 TCATTCCATGTCTAAG
23275881 CATACGAAGT
Statistics
Matches: 119, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
158 6 0.05
159 112 0.94
160 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.21
Consensus pattern (159 bp):
GAGGGTTGGGGCAGCAGGACCGACAGCACGCAAGGAGGGATCAGGCCAACCCCCGACTTGCGCAT
TATACCTCTCCGGCCGGCTCAGCGCCCACACGCTCATTTCATGGGATGACTTAGGCATACAGAGT
TCATTCCATGTCTAAGATCGGATCGAACG
Found at i:23275891 original size:26 final size:26
Alignment explanation
Indices: 23275854--23275906 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
23275844 GTTGGCTTAG
23275854 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
23275880 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
23275906 G
1 G
23275907 ATGGACCGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:23276269 original size:513 final size:502
Alignment explanation
Indices: 23275288--23276393 Score: 1308
Period size: 513 Copynumber: 2.2 Consensus size: 502
23275278 CGATCCCCAG
* * * * *
23275288 CTTGCGCATCCTGCCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGG
1 CTTGCGCATTCT-ACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* * * *
23275353 CATACGGAGTTCATCCCCAT-TCTAAGCATACGAAGTTCATTCTCAGTCTAAGATTGAACCGGAT
65 CATACAGAGTTCAT-TCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGAACCGGAC
* * ** * * * * * *
23275417 CGAAGGTTGCGACAGCAGGATTGGTAGCATGCAGGGGGGATTGGGTCGATCCCGGGCTTGCTCAT
129 CGAAGGTAGCGACAGCAGGATTGGTAGCACGCAGAAGGGATCGGGCCGATCCCCGACTGGCGCAT
* * *
23275482 TCTACCTCTCCGATCGGTTGAGTACCCGCACGCCCGTTTCATGGGTTAGCCTAGGCATAGGGAGT
194 TCTACCTCTCCGACCGGTAGAGTACCCGCACACCCGTTTCATGGGTTAGCCTAGGCATAGGGAGT
* * *
23275547 TCATTCCATGCCTAAGCCCCAGTCGGACAGAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGG
259 TCATTCCATGCCTAAGCCCCAGTCAGACAGAGGGTTGTGGCAGCGAGACCGACAGCACGTAGAGG
* * * * * *
23275612 GGGACTAGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCTCACACGCTCA
324 GGGACCAGGCCGATCCCCGACTTGCACATTATGCCTCTCCGGCCGGCTCAGCGCCCACACGCTCA
* * * *
23275677 TTTCATGGGATGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACGGAGGGTT
389 TTTCATAGGATGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTT
* * *
23275742 GGGGCAGTAGGATCGACAGCACGCAAGGA-GGGATCGGGCCAACCCCCGA
454 GCGGCAGCAGGATCGACAGCACGC-AGCAGGGGATCGGGCCAACCCCCGA
*
23275791 CTTGCGCATTCTACCTCTCCGGTGGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
1 CTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* *
23275856 ATACAGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA-TGGACCGTACCG
66 ATACAGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGAACCGGACCG
* *
23275920 AGGGTTACGGTAGCAGGACCAGTAGTAGGATCT-GTAGCACGTAGAAGGGATCGGGCCGATCCCC
131 A-----A-GGTAGC--GA-C---AGCAGGAT-TGGTAGCACGCAGAAGGGATCGGGCCGATCCCC
* * * ** * *
23275984 GACTGGCGCATTCTGCCTCTCCGACCGGTAGAGTGCCTGCACACCCGTTTTGTGGGTTGGCTTAG
183 GACTGGCGCATTCTACCTCTCCGACCGGTAGAGTACCCGCACACCCGTTTCATGGGTTAGCCTAG
* * *
23276049 GCATAGGGTGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGAGACCGACA
248 GCATAGGGAGTTCATTCCATGCCTAAGCCCCAGTCAGACAGAGGGTTGTGGCAGCGAGACCGACA
* * *
23276114 GCCCGTAGAGGGGGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTCCGGCTGGCTCAGCGC
313 GCACGTAGAGGGGGACCAGGCCGATCCCCGACTTGCACATTATGCCTCTCCGGCCGGCTCAGCGC
* * * * * *
23276179 CCGA-ATGCTCGTTTCCTAGGTTGACTTAGGCATACAGAGTTCATTTCCAGTCTAAGTTCAGATC
378 CC-ACACGCTCATTTCATAGGATGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATC
* * * *** *
23276243 -AGACCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGCAGGGGATTGGGTCGGTCCCCGG
442 GA-ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGCAGGGGATCGGGCCAACCCCCGA
* * * * * * * *
23276304 CATGTGCATTCTACCTC-CCGGTCGACTGAGTGCCCGCACACTCATTTCATGGGTTAGCTTAGGC
1 CTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
23276368 ATACAGAGTTCATTCCATGTCTAAGC
66 ATACAGAGTTCATTCCATGTCTAAGC
23276394 CCCAGTCGGA
Statistics
Matches: 508, Mismatches: 78, Indels: 25
0.83 0.13 0.04
Matches are distributed among these distances:
501 14 0.03
502 92 0.18
503 11 0.02
506 1 0.00
507 5 0.01
509 2 0.00
510 1 0.00
512 70 0.14
513 310 0.61
514 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (502 bp):
CTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
ATACAGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGAACCGGACCG
AAGGTAGCGACAGCAGGATTGGTAGCACGCAGAAGGGATCGGGCCGATCCCCGACTGGCGCATTC
TACCTCTCCGACCGGTAGAGTACCCGCACACCCGTTTCATGGGTTAGCCTAGGCATAGGGAGTTC
ATTCCATGCCTAAGCCCCAGTCAGACAGAGGGTTGTGGCAGCGAGACCGACAGCACGTAGAGGGG
GACCAGGCCGATCCCCGACTTGCACATTATGCCTCTCCGGCCGGCTCAGCGCCCACACGCTCATT
TCATAGGATGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGC
GGCAGCAGGATCGACAGCACGCAGCAGGGGATCGGGCCAACCCCCGA
Done.