Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 230 of 402
Found at i:23276885 original size:159 final size:159
Alignment explanation
Indices: 23276699--23277236 Score: 641
Period size: 159 Copynumber: 3.4 Consensus size: 159
23276689 CGGCCGACTG
*
23276699 AGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
** ** *
23276764 AGTCAAACCGAGGGTTGTGGCAGTGGGACCGGCAGCACGTAGAGGGGGACCGGGCCGATCCCCGG
66 AGTCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGG
*
23276829 CTTGCACATTATGCCTCTTCGATCGGCTC
131 CTTGCGCATTATGCCTCTTCGATCGGCTC
* * * * *
23276858 AGTGCCCGTACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
* ** * * * *
23276923 AGTTGGACCGAGGGTTGTCCCAGCAGGACCGGCAGAACACAGAGGGGGACCAGGCCGTTCCCCGG
66 AGTCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGG
23276988 CTTGCGCATTATGCCTCTTCGATCGGCTC
131 CTTGCGCATTATGCCTCTTCGATCGGCTC
* * * * **
23277017 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCATTCCCA-GTCTAAG-AT
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCC
* * * * ** ** * * *
23277080 CGGACCGGACTGAGGGTTGTGGTAGCAATATTGACAGCATGCAG-GGGGGACCGGGTCGATCCCC
65 CAG-TCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCC
* * * * * *
23277144 GGCTTACGCATTCTGCCTCTCCGGTTGGCTG
129 GGCTTGCGCATTATGCCTCTTCGATCGGCTC
* *
23277175 AGCGCCCGCACGCTCATTTCGCGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
23277237 ATACGGAGTT
Statistics
Matches: 316, Mismatches: 59, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
157 3 0.01
158 95 0.30
159 215 0.68
160 3 0.01
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (159 bp):
AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
AGTCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGG
CTTGCGCATTATGCCTCTTCGATCGGCTC
Found at i:23277245 original size:26 final size:26
Alignment explanation
Indices: 23277209--23277261 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23277199 GTTGGCTTAG
23277209 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23277235 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23277261 G
1 G
23277262 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23277968 original size:26 final size:26
Alignment explanation
Indices: 23277932--23277984 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23277922 GTTGACTTAG
*
23277932 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATAAGGAGTTCATTCC-CAGTCTAA
23277958 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
23277984 G
1 G
23277985 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:23278432 original size:158 final size:156
Alignment explanation
Indices: 23277958--23278451 Score: 506
Period size: 158 Copynumber: 3.1 Consensus size: 156
23277948 CTCAGTCTAA
* * * * * *
23277958 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGTAGCAGTATCGGTA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTA
* * * * ** * *
23278023 GCACGTAGAGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCTGGTTGAGCGTC
65 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGC-TC
* * * *
23278088 CGCCCACCCGTTTCATGGGTTGGCTTAG
129 CGCACGCACGTTTCGTGGGTTGGCTTAG
* ** * * * *
23278116 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGGATCGAGGGCTGTGGCAG-TGAGATCGG
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAG-GATCGG
* * * * * * *
23278179 TAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCACATTATGCCTTTCCAACCGGCTCAGC
63 TAGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGC
** * *
23278244 TCCCGCGTGCAAGTTTCGTGGGTTGACTTAG
127 T-CCGCACGCACGTTTCGTGGGTTGGCTTAG
* * * *
23278275 GCATACGAAGCTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGATA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTA
* *
23278340 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCAGCCGACTGAGCTCT
65 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCTC-
*
23278405 CGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CGCACGCACGTTTCGTGGGTTGGCTTAG
23278433 GCATACGGAGTTCATTCCA
1 GCATACGGAGTTCATTCCA
23278452 TGTTTAAGCA
Statistics
Matches: 266, Mismatches: 61, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
157 7 0.03
158 139 0.52
159 117 0.44
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAG
CACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCTCCG
CACGCACGTTTCGTGGGTTGGCTTAG
Found at i:23278485 original size:26 final size:26
Alignment explanation
Indices: 23278433--23278485 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23278423 GTTGGCTTAG
*
23278433 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
23278459 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
23278485 G
1 G
23278486 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:23278884 original size:29 final size:28
Alignment explanation
Indices: 23278800--23278899 Score: 145
Period size: 27 Copynumber: 3.7 Consensus size: 28
23278790 TTGACATTAG
23278800 GCATACGGAGTTCA--TCCCCAGTCTAA
1 GCATACGGAGTTCATTTCCCCAGTCTAA
* *
23278826 GCATAAGGAGTTCATCT-CCCAGTCTAA
1 GCATACGGAGTTCATTTCCCCAGTCTAA
23278853 GCATACGGAGTTCATTTTCCCCAGTCTAA
1 GCATACGGAGTTCA-TTTCCCCAGTCTAA
23278882 GCATACGGA-TTCATTTCC
1 GCATACGGAGTTCATTTCC
23278900 ATATAAGCAC
Statistics
Matches: 67, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
26 13 0.19
27 28 0.42
28 7 0.10
29 19 0.28
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (28 bp):
GCATACGGAGTTCATTTCCCCAGTCTAA
Found at i:23278907 original size:53 final size:53
Alignment explanation
Indices: 23278800--23278908 Score: 143
Period size: 53 Copynumber: 2.1 Consensus size: 53
23278790 TTGACATTAG
*
23278800 GCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATCTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATCTCCCAGTATAA
* *
23278853 GCATACGGAGTTCATTTTCCCCAGTCTAAGCATACGGA-TTCAT-TTCCA-TATAA
1 GCATACGGAGTTCA---TCCCCAGTCTAAGCATAAGGAGTTCATCTCCCAGTATAA
23278906 GCA
1 GCA
23278909 CTAGAATGAG
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
53 21 0.42
54 4 0.08
55 5 0.10
56 20 0.40
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (53 bp):
GCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATCTCCCAGTATAA
Found at i:23279562 original size:159 final size:158
Alignment explanation
Indices: 23278961--23279563 Score: 543
Period size: 159 Copynumber: 3.8 Consensus size: 158
23278951 GGAACCGGGC
* * * * *
23278961 CGATCCCCGGCTTGCGCATTCTGCCTCTCCG-GTCGACTGAGTGCCCGCACGC-CTGTTTCGTGG
1 CGATCCCCGACTTGCGCATTCTGCCTCTCCGACT-GGCTGAGCGCCCGCACGCTC-GTTTCATGG
* * *
23279024 GTTGGCTTAGGCTTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGC
64 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGC
* * * *
23279089 GGTACCGACAGCACGCAGAGAGGGACGGGT
129 GGGACCGACAGCACACAGAGGGGGACAGGT
* * * ** ** * ** * * *
23279119 CAATCCCTGACTTGCGCATTATGCCTCTTTGACCAGCTCAGCGCTTGTACGTTCATCTT-ATGGG
1 CGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCTCGT-TTCATGGG
* * * **** * * ** * **
23279183 TTGACTTACGCATACAGAGTTCATTCTCA-GTCTAAG-ATTGGATCGGTTCAAGGGTTGCAGTAG
65 TTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAG
* * * *
23279246 CAGGATCGATAGCACACAG-GAGGGGACCGAGT
128 CGGGACCGACAGCACACAGAG-GGGGACAG-GT
* * * * * * *
23279278 CGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCTGGCTGAGCACCCACATGCCCGTTTCATGGGT
1 CGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
* *
23279343 TGGCTTAGGCATAGGGAGATCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCGG
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCGG
*
23279408 GACCGGCAGCACACAGAGGGGGATCAGGT
131 GACCGACAGCACACAGAGGGGGA-CAGGT
* * * *
23279437 CGATCCTCGACTTGCGTATTCTGCCTCTTCGACTGGCTGAGCGCCCGCATGCTCGTTTCATGGGT
1 CGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
* * * *
23279502 TGGCTTAGGCATACGGAGGTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTATGGTAG
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAG
23279564 TAGGAATGGC
Statistics
Matches: 336, Mismatches: 97, Indels: 23
0.74 0.21 0.05
Matches are distributed among these distances:
157 2 0.01
158 105 0.31
159 225 0.67
160 4 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCGG
GACCGACAGCACACAGAGGGGGACAGGT
Found at i:23279731 original size:26 final size:26
Alignment explanation
Indices: 23279695--23279746 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23279685 TTGACTTAGA
*
23279695 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
* *
23279721 CATACAGAGTTCATTCCTAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
23279747 ATTGGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:23280054 original size:151 final size:151
Alignment explanation
Indices: 23279778--23280055 Score: 373
Period size: 151 Copynumber: 1.8 Consensus size: 151
23279768 CGATAGCAGG
* * *
23279778 ATCGGTAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCGGCT
1 ATCGGTAGCACGCAGGAGGGACCGGGTCCATCCCCGGCTTACGCATTATGCCTCTACGGTCGGCT
* *
23279843 CAACGCCCGAACGCTCGTTTCATGGGTTGACTCAGGCATACTGAGTTCATTCCCAGTCTAAGATT
66 CAACGCCCGAACGCTCGTTTCATGGGTTGACTCAGGCATACGGAGTTCATTCCCAATCTAAGATT
23279908 GGACCGGATTGCGACAACAAA
131 GGACCGGATTGCGACAACAAA
* * *
23279929 ATCGGTAGCACGCAGGAAGGGACTGGG-CCATCCCCGGCTTGCGCATTCTGCCTCTACGGTCGGC
1 ATCGGTAGCACGCAGG-AGGGACCGGGTCCATCCCCGGCTTACGCATTATGCCTCTACGGTCGGC
* ** * ** *
23279993 TGAGTGCCC-ACACGCTCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCATT-CCATATCTAAG
65 TCAACGCCCGA-ACGCTCGTTTCATGGGTTGACTCAGGCATACGGAGTTCATTCCCA-ATCTAAG
23280056 CATACGGAGT
Statistics
Matches: 109, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
150 4 0.04
151 97 0.89
152 8 0.07
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (151 bp):
ATCGGTAGCACGCAGGAGGGACCGGGTCCATCCCCGGCTTACGCATTATGCCTCTACGGTCGGCT
CAACGCCCGAACGCTCGTTTCATGGGTTGACTCAGGCATACGGAGTTCATTCCCAATCTAAGATT
GGACCGGATTGCGACAACAAA
Found at i:23280269 original size:26 final size:26
Alignment explanation
Indices: 23280239--23280291 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23280229 GTTGACTTAG
23280239 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23280265 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23280291 G
1 G
23280292 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23280372 original size:197 final size:204
Alignment explanation
Indices: 23279978--23280386 Score: 483
Period size: 210 Copynumber: 2.0 Consensus size: 204
23279968 TGCGCATTCT
* * * * **
23279978 GCCTCTACGGTCGGCTGAGTGCCCACACGCTCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCA
1 GCCTCTACGATCGGCTAAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* *
23280043 TTCCATATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCA
66 TCCCATATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGGCA
* * * * *
23280108 GTAGGACCAGTAGCAGGATCGAGAGCACACAGGGGGGGATCGGGCCAATCCCCGGCTTGCGCATT
131 GCAGG--CAGTA-CAGGAT---GAGCACACAGGGGGGGACCAGGCCAATCCCCGACTTGCACATT
* *
23280173 CTGCCTCTTCGATCG
190 CTGCCTCTCCGACCG
* * *
23280188 GCCTCTCCGATCGGCTAAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTACGATCGGCTAAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * *
23280253 TCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGC
66 T-CCCATATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGGC
* * *
23280317 AGCAGG-A-T-C-GG-T-AGCACGCA-GGGGGGACCAGGCCGATCCCTGACTTGCACATTCTGCC
130 AGCAGGCAGTACAGGATGAGCACACAGGGGGGGACCAGGCCAATCCCCGACTTGCACATTCTGCC
23280375 TCTCCGACCG
195 TCTCCGACCG
23280385 GC
1 GC
23280387 AGAGTGCCCG
Statistics
Matches: 174, Mismatches: 24, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
197 42 0.24
198 7 0.04
202 1 0.01
203 2 0.01
204 1 0.01
206 1 0.01
207 1 0.01
210 116 0.67
211 3 0.02
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (204 bp):
GCCTCTACGATCGGCTAAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
TCCCATATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGGCA
GCAGGCAGTACAGGATGAGCACACAGGGGGGGACCAGGCCAATCCCCGACTTGCACATTCTGCCT
CTCCGACCG
Found at i:23280627 original size:159 final size:157
Alignment explanation
Indices: 23280265--23280628 Score: 367
Period size: 159 Copynumber: 2.3 Consensus size: 157
23280255 CCCAGTCTAA
* * *
23280265 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGTA
1 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACC-GACCGAGGGTTGCGGCAGCAGGACCGGTA
* * * * *
23280330 GCACGCAGGGGGGACCAGGCCGATCCCTGACTTGCACATTCTGCCTCTCCGACCGGCAGAGTGCC
65 GCACGCAGGGGGGACAAGGCCGATCCCTGACTTGAACATTATGCCTCTCCGACCGGCACAGCGCC
* * * *
23280395 CGCACACCCGTTTCGTGGGCTGGCTTAG
130 CGAACACCCGTTTCATAGGCTGACTTAG
* * ** * * * *
23280423 GCATAGGGAGTTCA-TTCCTTGTCTAAGCCCCAGTCAGATCGAGGGTTGTGGCAGC-GAGACCGG
1 GCATACGGAGTTCATTTCC-AGTCTAAG-ATCAGACCGACCGAGGGTTGCGGCAGCAG-GACCGG
* * ** *
23280486 CT-GCACGCAGAGGGGGACAAGGTCGAT-CCTCGGCTTGAACATTATGCCTCTCCGGTCGGCTCA
63 -TAGCACGCAG-GGGGGACAAGGCCGATCCCT-GACTTGAACATTATGCCTCTCCGACCGGCACA
* * *
23280549 GCGCCCGAACGCTCGTTTCATAGGTTGACTTAG
125 GCGCCCGAACACCCGTTTCATAGGCTGACTTAG
*
23280582 GCATACGAAGTTCATTTCCAGTCTAAGATCAGACCGAACCGAGGGTT
1 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCG-ACCGAGGGTT
23280629 ACGGTAGTAG
Statistics
Matches: 162, Mismatches: 36, Indels: 15
0.76 0.17 0.07
Matches are distributed among these distances:
157 4 0.02
158 57 0.35
159 97 0.60
160 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (157 bp):
GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCGACCGAGGGTTGCGGCAGCAGGACCGGTAG
CACGCAGGGGGGACAAGGCCGATCCCTGACTTGAACATTATGCCTCTCCGACCGGCACAGCGCCC
GAACACCCGTTTCATAGGCTGACTTAG
Found at i:23280921 original size:171 final size:171
Alignment explanation
Indices: 23280709--23281147 Score: 526
Period size: 171 Copynumber: 2.6 Consensus size: 171
23280699 CGGCTGAGTG
* * *
23280709 CCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
23280774 GAACCGAGGGTTATGGTAGCAGGACCGACAGCGGGATCGACAGCACGTCGA-G-GGGGACCAGGC
66 GAACCGAGGGTTATGGTAGCAGGACCGACAGCGGGATCGACAGCACG--GAGGAGGGGACCAGGC
* * * * * *
23280837 TGATCCTGGGCTTGCACTTTCTACCTCTCCAGCCGACTGAGCT
129 CGATCCTCGGCCTGCACATTCTACCGCTCCAGCCGACTGAGCA
* ** *
23280880 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGA
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-
* * * * * * *
23280943 CCGGACCGTGGGTTATGGTAGTAGGACCAACAGTGGGATCGATAGCACGGAGGAGGGGACCGGGC
64 CCGAACCGAGGGTTATGGTAGCAGGACCGACAGCGGGATCGACAGCACGGAGGAGGGGACCAGGC
* ** * *
23281008 CGATCCTCGGCCTGCGCATTCTGTCGCTCTAGTCGACTGAGCA
129 CGATCCTCGGCCTGCACATTCTACCGCTCCAGCCGACTGAGCA
* * *
23281051 CCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * *
23281116 GAACCAAGGGTTGTGGTAGCGGGATCGACAGC
66 GAACCGAGGGTTATGGTAGCAGGACCGACAGC
23281148 ATGCAGAGGG
Statistics
Matches: 221, Mismatches: 41, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
169 2 0.01
170 6 0.03
171 208 0.94
172 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (171 bp):
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
GAACCGAGGGTTATGGTAGCAGGACCGACAGCGGGATCGACAGCACGGAGGAGGGGACCAGGCCG
ATCCTCGGCCTGCACATTCTACCGCTCCAGCCGACTGAGCA
Found at i:23281284 original size:158 final size:158
Alignment explanation
Indices: 23281054--23281423 Score: 372
Period size: 158 Copynumber: 2.3 Consensus size: 158
23281044 CTGAGCACCT
* * * * ** * ** *
23281054 GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCCGA
1 GCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGATCGGA-CCGG
* * * * ** *
23281118 ACCAAGGGTTGTGGTAG-CGGGATCGACAGCATGCAGAGGGGGATCAGGCTGATCCTCGATTTAC
65 ACCGAGGGTTGCGATAGTCGGG-TCGACAGCACGCAG-GGGGGATCAGGCCAATCCTCGACTTAC
* * *
23281182 GCATTATGCCTCTTCG-GTCGGCTCAACGTTC
128 GCATTATGCCTCTCCGACT-GGCTCAACGCTC
* * *
23281213 GCACGCTCGTTTC-TTGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAGATCGGACCGG
1 GCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCTAAGATCGGACCGG
* * * *
23281276 ACCGAGGGTTGCGATAGTTGGGTCGACAGCACGCAGGGGGGATCGGGCCAATCCTCGGCTTGCGC
65 ACCGAGGGTTGCGATAGTCGGGTCGACAGCACGCAGGGGGGATCAGGCCAATCCTCGACTTACGC
* * *
23281341 ATTCTGCCTCTCCGACTGGCTGAGCGCTC
130 ATTATGCCTCTCCGACTGGCTCAACGCTC
* *
23281370 GCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 GCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG
23281424 CATACGGAGT
Statistics
Matches: 173, Mismatches: 32, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
157 59 0.34
158 94 0.54
159 20 0.12
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGATCGGACCGGA
CCGAGGGTTGCGATAGTCGGGTCGACAGCACGCAGGGGGGATCAGGCCAATCCTCGACTTACGCA
TTATGCCTCTCCGACTGGCTCAACGCTC
Found at i:23281427 original size:26 final size:26
Alignment explanation
Indices: 23281397--23281449 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23281387 GTTGGCTTAG
23281397 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23281423 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23281449 G
1 G
23281450 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23282154 original size:26 final size:26
Alignment explanation
Indices: 23282118--23282167 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
23282108 GTTGACTAAG
23282118 GCATACGGAGTTCA-TCCCTAGTCTGA
1 GCATACGGAGTTCATTCCC-AGTCTGA
23282144 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
23282168 AAGATCAGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTGA
Found at i:23282462 original size:159 final size:158
Alignment explanation
Indices: 23282144--23282646 Score: 572
Period size: 159 Copynumber: 3.2 Consensus size: 158
23282134 CCTAGTCTGA
* * * * *
23282144 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGCTCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACA
* *
23282209 GCACGCAG-GGGGGACCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
66 GCACGCAGAGGGGGATCGGGCCGATCC-CGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
*
23282273 CCGCACGC-CTGTTTCATGGGTTGGCTTAG
130 CCGCACGCTC-GTTTCGTGGGTTGGCTTAG
** * * * * *
23282302 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTA-ACCGGACCGAGGGTTGTGGTAGCGGGACCGA
1 GCATACAGAGTTCATTCCCA-GTCTAAGCTC-AGACCGGACCGAGGGTTGCGATAGCAGGATCGA
* * * * * *
23282365 CAGCACGCAGAGAGGGATCGGGCCGATGCCCGACTTACGTATTATGCCTCTCCGACCGGCTCAGC
64 CAGCACGCAGAGGGGGATCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
** *
23282430 ATCCGCACGCTCGTTTCGTGGGTTGACTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
23282461 GCATACAGAGTTCATTCCCAGTCTAAGTTCAGATCGGACTGAGGGTTGC-ACTAGCAGGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGCTCAGACCGGACCGAGGGTTGCGA-TAGCAGGATCGAC
* * * * * *
23282525 AGCATGCA-AGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCTGGCTGAGG
65 AGCACGCAGA-GGGGGATCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
23282589 GCCCGCACGCTCGTTTCGTGGG-TGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
23282619 GCATACAGAGTTCATT-CCATGTCTAAGC
1 GCATACAGAGTTCATTCCCA-GTCTAAGC
23282647 ATACGGAGTT
Statistics
Matches: 286, Mismatches: 49, Indels: 20
0.81 0.14 0.06
Matches are distributed among these distances:
157 6 0.02
158 89 0.31
159 185 0.65
160 6 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGCTCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACA
GCACGCAGAGGGGGATCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:23282655 original size:26 final size:26
Alignment explanation
Indices: 23282619--23282671 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23282609 GGTGGCTTAG
23282619 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
23282645 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
23282671 G
1 G
23282672 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:23283535 original size:26 final size:26
Alignment explanation
Indices: 23283499--23283551 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
23283489 GTTGACTTAG
23283499 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
23283525 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
23283551 G
1 G
23283552 AGCGGATCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:23283820 original size:158 final size:157
Alignment explanation
Indices: 23283525--23283867 Score: 395
Period size: 158 Copynumber: 2.2 Consensus size: 157
23283515 CCCAGTCTAA
* * ** *
23283525 GCATATGGAGTTCATTCCCAGTCTAAGAGCGGATCGAACCGAGGGTTGTGACAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGAGCAGATCGAACCGAGGGTTACGACAGAAGGATCGACA
* * * * * * * *
23283590 GTAGGCAAGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTTGGCTCAGTGCT
65 GCACGCAAGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGACTCAGCGCC
23283655 CGAACGCTCGTTTCGTGGGTT-GACTTAG
130 CGAACGCTCGTTTCGTGGGTTAG-CTTAG
* * * *
23283683 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATC-AGACTGAGGGTTACGATAGAAGGATCGAT
1 GCATACGGAGTTCATTCC-AGTCTAAGAGCAGATCGA-ACCGAGGGTTACGACAGAAGGATCGAC
* * * * * *
23283747 AGCACGTAGGGGGGA-CTGGGCCGGTCCCCGGCTTGCTCATTCTACCTCTCCGGTCGACTGAGCG
64 AGCACGCAAGGGGGATC-GGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGACTCAGCG
*
23283811 CCCGCACGCTCGTTTCGTGGGTTAGCTTAG
128 CCCGAACGCTCGTTTCGTGGGTTAGCTTAG
23283841 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
23283868 CATACGGAGT
Statistics
Matches: 156, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
157 5 0.03
158 150 0.96
159 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGAGCAGATCGAACCGAGGGTTACGACAGAAGGATCGACAG
CACGCAAGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGACTCAGCGCCC
GAACGCTCGTTTCGTGGGTTAGCTTAG
Found at i:23283877 original size:26 final size:26
Alignment explanation
Indices: 23283841--23283893 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23283831 GTTAGCTTAG
23283841 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
23283867 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
23283893 G
1 G
23283894 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:23283914 original size:184 final size:184
Alignment explanation
Indices: 23283683--23284430 Score: 677
Period size: 184 Copynumber: 4.0 Consensus size: 184
23283673 GTTGACTTAG
* * * ** **
23283683 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACTGAGGGTTACGATAGAAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGAAGGATCGGCA
* * * * * *
23283748 GCACGTAGGGGGGACTGGGCCGGTCCCCGGCTTGCTCATTCTACCTCTCCGGTCGACTGAGCGCC
66 GCACGCAAGGGGGACTAGGCCGATCCCCGACTTGCTCATTCTACCTCTCCGGCCGACTGAGCGCC
*
23283813 CGCACGCTCGTTTCGTGGGTT-AGCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
131 CGCACGCCCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATCTCCA-GTCTAA
* * * *
23283867 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCAAGGGTTACGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGAAGGATCGGCA
* * * * * *
23283932 GCACGCAGGGGGGACCAAGACGATCCCTGACTTGCAT-ATTCTGCCTCTCCGACTGGCCTCTCCG
66 GCACGCAAGGGGGACTAGGCCGATCCCCGACTTGC-TCATTCTACCTCT-C--C-GG-----CC-
* ** * * *
23283996 GTCGGTTGAATGCCCGTACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTC
120 GAC---TGAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTC
23284061 TAA
182 TAA
* * ** * *
23284064 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGTCCGAGGGTTGTGGCAGCAGGATTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTACGGCAGAAGGATCGGC
* * * *
23284128 AGCACGCAAAGGGGAC-AGGGCCGATCCCCGACTT-ATGCATTCTGCCTCTCCGACCGACTGAGC
65 AGCACGCAAGGGGGACTA-GGCCGATCCCCGACTTGCT-CATTCTACCTCTCCGGCCGACTGAGC
* * *
23284191 GCCTGCAAGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
128 GCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAA
* * * * **
23284248 GGATATGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAA-GATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAG-AAGGATCGGC
* * * * * * * *
23284312 AGCATG-AAGGGGGACTAGGCTGATCCTCGGCTTGCGCATTCTACCTCTCTGGCCGGCTGAGCAC
65 AGCACGCAAGGGGGACTAGGCCGATCCCCGACTTGCTCATTCTACCTCTCCGGCCGACTGAGCGC
** * * * *
23284376 TTGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAA
130 CCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCA-GTCTAA
23284431 ACCCCAGTCG
Statistics
Matches: 464, Mismatches: 75, Indels: 51
0.79 0.13 0.09
Matches are distributed among these distances:
182 3 0.01
183 88 0.19
184 205 0.44
185 4 0.01
187 3 0.01
188 4 0.01
193 2 0.00
194 3 0.01
195 1 0.00
196 3 0.01
197 143 0.31
198 5 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGAAGGATCGGCA
GCACGCAAGGGGGACTAGGCCGATCCCCGACTTGCTCATTCTACCTCTCCGGCCGACTGAGCGCC
CGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAA
Found at i:23284067 original size:26 final size:26
Alignment explanation
Indices: 23284038--23284090 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23284028 GTTGACTTAG
23284038 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
23284064 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23284090 G
1 G
23284091 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23284131 original size:197 final size:190
Alignment explanation
Indices: 23283791--23284324 Score: 565
Period size: 197 Copynumber: 2.8 Consensus size: 190
23283781 GCTCATTCTA
*
23283791 CCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT-AGCTTAGGCATACGGAGTTCA
1 CCTCTCCGGTCGACTGA-AGCCCG-ACGCTCG-TTCGTGGGTTGA-CTTAGGCATACGGAGTTCA
* * ** *
23283855 T-TCCATGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCAAGGGTTACGGT
62 TCTCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGC
*
23283919 AGCAGGATCGGCAGCACGCAGGGGGGACCA-AGACGATCCCTGACTTGCAT-ATTCTGCCTCTCC
126 AGCAGGATCGGCAGCACGCAGGGGGGA-CAGAGACGATCCCCGACTT--ATCATTCTGCCTCTCC
23283982 GAC
188 GAC
**
23283985 TGGCCTCTCCGGTCGGTTGAATGCCCGTACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTT
1 ---CCTCTCCGGTCGACTGAA-GCCCG-ACGCTCGTT-CGTGGGTTGACTTAGGCATACGGAGTT
* *
23284050 CATCTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGTCCGAGGGTTGTG
60 CATCTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGTG
* ** * *
23284114 GCAGCAGGATTGGCAGCACGCAAAGGGGACAGGGCCGATCCCCGACTTATGCATTCTGCCTCTCC
124 GCAGCAGGATCGGCAGCACGCAGGGGGGACAGAGACGATCCCCGACTTAT-CATTCTGCCTCTCC
23284179 GAC
188 GAC
** *
23284182 CGACT--GAG-CGCCTGCAAG-CC--CG-T--TTCGTGGGTTGACTTAGGCATACGGAGTTCATC
1 CCTCTCCG-GTCGACTG-AAGCCCGACGCTCGTTCGTGGGTTGACTTAGGCATACGGAGTTCATC
* * * * *
23284238 CCCAGTCTAAGGATATGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGTGGCAGC
64 TCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGC
* * *
23284303 AAGATCGGCAGCATGAAGGGGG
129 AGGATCGGCAGCACGCAGGGGG
23284325 ACTAGGCTGA
Statistics
Matches: 292, Mismatches: 34, Indels: 35
0.81 0.09 0.10
Matches are distributed among these distances:
184 103 0.35
185 3 0.01
187 1 0.00
188 2 0.01
191 2 0.01
192 6 0.02
193 3 0.01
194 3 0.01
195 2 0.01
196 5 0.02
197 157 0.54
198 5 0.02
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (190 bp):
CCTCTCCGGTCGACTGAAGCCCGACGCTCGTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTC
CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAG
GATCGGCAGCACGCAGGGGGGACAGAGACGATCCCCGACTTATCATTCTGCCTCTCCGAC
Found at i:23284620 original size:159 final size:157
Alignment explanation
Indices: 23284256--23284633 Score: 345
Period size: 159 Copynumber: 2.4 Consensus size: 157
23284246 AAGGATATGG
* * * * * *
23284256 AGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAAGATCGGCAGCATGAAG
1 AGTTCATTCCCAGTCTAAGACCAGACCGGACTGAGGGTTGTGGCAGCAGGACCGGCAGCACGAAG
* * * * * **
23284321 GGGGACTAGGCTGATCCTCGGCTTGCGCATTCTACCTCTCTGGCCGGCTGAGCACTTGCACGCCC
66 GGGGACTAGGATGATCCCCGGCTTGCGCAATATACCTCTCTGGCCGGCTCAGCACCAGCACGCCC
* * * *
23284386 ATTTCATGGGTTGGCTTAGGCATAGGG
131 ATTTCATGAGTTGACTTAGGCATACGA
* * * * * * *
23284413 AGTTCATT-CCATGTCTAA-ACCCCAG-TCGAACCGACGGTTATGGTAGCAGGACCGGTAGCACG
1 AGTTCATTCCCA-GTCTAAGA--CCAGACCGGACTGAGGGTTGTGGCAGCAGGACCGGCAGCACG
* * * *
23284475 CAGAGGGGGA-TCGGATCGATCCCCTGG-TTGCGCAATATGCCTCT-TCGGTCGGCTCAGCGCCA
63 -A-AGGGGGACTAGGAT-GATCCCC-GGCTTGCGCAATATACCTCTCT-GGCCGGCTCAGCACCA
* *
23284537 GCACGCTCGTTTCATGAGTTGACTTAGGCATACGA
123 GCACGCCCATTTCATGAGTTGACTTAGGCATACGA
* * *
23284572 AGTTCATTCCCAGTCTAAGACCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACG
1 AGTTCATTCCCAGTCTAAGACCAGACCGGACTGAGGGTTGTGGCAGCAGGACCGGCAGCACG
23284634 TAGACAGGTC
Statistics
Matches: 170, Mismatches: 40, Indels: 20
0.74 0.17 0.09
Matches are distributed among these distances:
156 4 0.02
157 39 0.23
158 13 0.08
159 108 0.64
160 6 0.04
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAAGACCAGACCGGACTGAGGGTTGTGGCAGCAGGACCGGCAGCACGAAG
GGGGACTAGGATGATCCCCGGCTTGCGCAATATACCTCTCTGGCCGGCTCAGCACCAGCACGCCC
ATTTCATGAGTTGACTTAGGCATACGA
Found at i:23284750 original size:26 final size:26
Alignment explanation
Indices: 23284721--23284773 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23284711 GTTGGCTTAG
23284721 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23284747 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23284773 G
1 G
23284774 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23285130 original size:26 final size:26
Alignment explanation
Indices: 23285101--23285153 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23285091 GTTGACTTAG
23285101 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23285127 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23285153 G
1 G
23285154 AGCGAACCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23286370 original size:26 final size:26
Alignment explanation
Indices: 23286334--23286390 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 26
23286324 GTTAATTTAG
23286334 GCATACGAAGTTCA-TCCCCAGTCTAA
1 GCATACGAAGTTCAGT-CCCAGTCTAA
23286360 GCATACGAAGTTCAGTCCCAGTCTAA
1 GCATACGAAGTTCAGTCCCAGTCTAA
23286386 G-ATAC
1 GCATAC
23286391 AACCGGACCG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
25 4 0.13
26 25 0.83
27 1 0.03
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCAGTCCCAGTCTAA
Found at i:23286619 original size:514 final size:514
Alignment explanation
Indices: 23285667--23286622 Score: 1188
Period size: 514 Copynumber: 1.8 Consensus size: 514
23285657 AACCGGACCG
* * *
23285667 AGGGTTACGGTAGCAAGACCAGCAGCAGGATCGGTAGCACGCTGGGGGGACCGGGTCGATCCCCG
1 AGGGTTACGATAGCAAGACCAGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGTCGATCCCCG
* * * * * ** ** *
23285732 ACTTGTGTATTTTGCCTCTCCAGTCGGCCTTTCCGATCGACTGAGTGCCCATTCGCTCGTTTCAT
66 ACTTATGCATTTTGCCTCTCCAGCCGGCCTCTCCGACCGACTGAGCACCCACACGCTCATTTCAT
* * *
23285797 GGGTTAACTTAGGCATATGGAGTTCATCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCAAAGA
131 GGGTTAACTTAGGCATACGAAGTTCATCCCAGTCTAAGCATACGAAGTTCAGTCCCAGTCAAAGA
* *
23285862 TCGAACCGGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCATGGGGGATCGGGCTGATCCCC
196 TCGAACCGGACCGAGGGTT----------G-TCGACAGCACGCAGGGGGGATCGGGCTGATCCCC
* *** **
23285927 GACTTGCACATTCTGCCTCTCTGGCCTGCTGAGCGCCCGCACGTTTGTTTTGTCGGTTGGCTTAG
250 GACTTGCACATTCTGCCTCTCCGGCCTGCTGAGCGCCCGCACGTCCATTTCATCGGTTGGCTTAG
* ** *
23285992 GCATAGGGAGTTCATTCCATGCCTAAGCCCCAGTCGAACCGAGGGTTCTGGCAGCGGGACCGGCA
315 GCATAGGGAGTTCATTCAATGCCTAAGCCCCAACCGAACCGAGGGTTCTGGCAGCGGGACCGACA
* *
23286057 GCACGCAGAGAGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGC
380 GCACGCAGAGAGGGACCGAGCCGATCCCCGGCTTGAGCATTATGCCTCTCCGGTCGGCTCAGCGC
23286122 TCGAACGCTCATTTCATGGGTCGACTTAGGCATACGGAGTTCACTCCCAGTATAAGATCAGACCA
445 TCGAACGCTCATTTCATGGGTCGACTTAGGCATACGGAGTTCACTCCCAGTATAAGATCAGACCA
23286187 GACTA
510 GACTA
* * * * * *
23286192 AGGGTTATGATAGCAGGACCAGCAGCAGGATTGGCAGCATGCAGGGGGGACTGGGTCGATCTCCG
1 AGGGTTACGATAGCAAGACCAGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGTCGATCCCCG
* * * ** * *
23286257 GCTTATGCATTTTGCCTCTCC-GACCGGCCTCTCTGGCCGGTTGAGCACCCGCACGCTCATTTTA
66 ACTTATGCATTTTGCCTCTCCAG-CCGGCCTCTCCGACCGACTGAGCACCCACACGCTCATTTCA
* *
23286321 TGGGTTAATTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCAGTCCCAGTCTAA
130 TGGGTTAACTTAGGCATACGAAGTTCAT-CCCAGTCTAAGCATACGAAGTTCAGTCCCAGTCAAA
*
23286386 GATAC-AACCGGACCGAGGGTT-TCGACAGCACGCAGGGGGGATCGGGCTGATCCCCGACTTGCG
194 GAT-CGAACCGGACCGAGGGTTGTCGACAGCACGCAGGGGGGATCGGGCTGATCCCCGACTTGCA
* ** * *
23286449 CATTCTGCCTCTCCGG-CTGGTTGAGCGCTTGTACGTCCATTTCATGGGTTGGCTTAGGCATAGG
258 CATTCTGCCTCTCCGGCCT-GCTGAGCGCCCGCACGTCCATTTCATCGGTTGGCTTAGGCATAGG
* * *
23286513 GAGTTCAGTT-AATGTCTAAGCCCCAACC-AGACCGAGGGTTGTGGCAGCGGGATCGACAGCACG
322 GAGTTCA-TTCAATGCCTAAGCCCCAACCGA-ACCGAGGGTTCTGGCAGCGGGACCGACAGCACG
* * *
23286576 CAGAGGGGGACC-AGGTCGATCCCCGGCTTGAGCATTCTGCCTCTCCG
385 CAGAGAGGGACCGA-GCCGATCCCCGGCTTGAGCATTATGCCTCTCCG
23286623 ACTGACTGAG
Statistics
Matches: 367, Mismatches: 57, Indels: 25
0.82 0.13 0.06
Matches are distributed among these distances:
513 4 0.01
514 181 0.49
515 2 0.01
524 1 0.00
525 126 0.34
526 52 0.14
527 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (514 bp):
AGGGTTACGATAGCAAGACCAGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGTCGATCCCCG
ACTTATGCATTTTGCCTCTCCAGCCGGCCTCTCCGACCGACTGAGCACCCACACGCTCATTTCAT
GGGTTAACTTAGGCATACGAAGTTCATCCCAGTCTAAGCATACGAAGTTCAGTCCCAGTCAAAGA
TCGAACCGGACCGAGGGTTGTCGACAGCACGCAGGGGGGATCGGGCTGATCCCCGACTTGCACAT
TCTGCCTCTCCGGCCTGCTGAGCGCCCGCACGTCCATTTCATCGGTTGGCTTAGGCATAGGGAGT
TCATTCAATGCCTAAGCCCCAACCGAACCGAGGGTTCTGGCAGCGGGACCGACAGCACGCAGAGA
GGGACCGAGCCGATCCCCGGCTTGAGCATTATGCCTCTCCGGTCGGCTCAGCGCTCGAACGCTCA
TTTCATGGGTCGACTTAGGCATACGGAGTTCACTCCCAGTATAAGATCAGACCAGACTA
Found at i:23288577 original size:158 final size:157
Alignment explanation
Indices: 23288400--23288851 Score: 358
Period size: 158 Copynumber: 2.8 Consensus size: 157
23288390 CCTACACGTT
* *
23288400 CGTTTTGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATTAGACCAGACCGAGGG
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGATTAGA-CAGACCGAGGG
*
23288465 TTGCAGCAACAGGATCGACAGCACGTAGGGGGCATCGGGCCGATCCTCGGCTTGTGCATTCTGCC
64 TTGCGGCAACAGGATCGACAGCACGTAGGGGGCATCGGGCCGATCCTCGGCTTGTGCATTCTGCC
* * ** *
23288530 TTTCTAG-TTGATTAAGCGCCCGCACGCC
129 TTTCTAGATCGACTAAGCGCCCAAACACC
* * * * *** * *
23288558 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCA-GTCTAAG-ATTAGACAGACCGAGGG
* * * * * * * * * *
23288623 TTGTGGCAGCGGGA-CCAGCAGCACGCAGAGGACGATCGGGCTGATCCTCGGCTTGAGCATTATG
64 TTGCGGCAACAGGATCGA-CAGCACGTAGGGGGC-ATCGGGCCGATCCTCGGCTTGTGCATTCTG
** * * * *
23288687 CCACTC-CGATCGGCTCAGCGCCCAAACACT
127 CCTTTCTAGATCGACTAAGCGCCCAAACACC
** * * * * *
23288717 TATTTCGTGCGTT-ACCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATTGGATAGGATCGAAA
1 CGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCA-TCCCAGTCTAAGATTAGACA-GACCG-AG
* * * *
23288780 GGTTGCGGCAACAGGATCGATAACACGTAGGGGGGATTGGGCCGATCC-CTGGCTTGTGCATTCT
62 GGTTGCGGCAACAGGATCGACAGCACGTAGGGGGCATCGGGCCGATCCTC-GGCTTGTGCATTCT
*
23288844 GTCTTTCT
126 GCCTTTCT
23288852 GGCTGGCTGA
Statistics
Matches: 216, Mismatches: 66, Indels: 23
0.71 0.22 0.08
Matches are distributed among these distances:
157 7 0.03
158 114 0.53
159 93 0.43
160 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGATTAGACAGACCGAGGGTT
GCGGCAACAGGATCGACAGCACGTAGGGGGCATCGGGCCGATCCTCGGCTTGTGCATTCTGCCTT
TCTAGATCGACTAAGCGCCCAAACACC
Found at i:23288824 original size:317 final size:323
Alignment explanation
Indices: 23288146--23288923 Score: 821
Period size: 317 Copynumber: 2.4 Consensus size: 323
23288136 GACCAGCAGT
* *** * *
23288146 AGGATCGGTAGCACGTAGGGGGGATCGAAACGATCCCCGGCTTGTGCATTCTGCCTCTCTGATCA
1 AGGATCGATAGCACGTAGGGGGGATCGGGCCGAT-CCCGGCTTGTGCATTCTGCCTTTCTGATGA
* * *
23288211 GTTGACCACCCGTACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 -TTGAGCGCCCGTACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * *
23288276 CAACAGTCGGACCGAGGGTTGTGACAGCAGGACTGGCAGCGGGATCGACAGAATGCAGAGGGGTA
129 CAACAGTCGGACCGAGGGTTGTGACAGCAGGAC--GCAGCAGCATCGACAGAATG-AGA-GCGTA
* * ** * * * * * *
23288341 CCGGGCTGATCCTCGGCTTGCGTATTATGCCTTTCTGACTGGCTGAGTGCCTACACGTTCGTTTT
190 CCGGGCTGATCCTCGGCTTGAGCATTATGCCACTCCGACTGGCTCAGCGCCAACACGTTCATTTC
*
23288406 GTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAG
255 GTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATTAGACCAGACCGAAGGTTGCAG
23288471 CAAC
320 CAAC
* * *
23288475 AGGATCGACAGCACGTAGGGGGCATCGGGCCGATCCTCGGCTTGTGCATTCTGCCTTTCTAGTTG
1 AGGATCGATAGCACGTAGGGGGGATCGGGCCGATCC-CGGCTTGTGCATTCTGCCTTTCT-GATG
* * * * * *
23288540 ATTAAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAG
64 ATTGAGCGCCCGTACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
** * * *
23288605 CCCCAGTCGGACCGAGGGTTGTGGCAGCGGGAC-CAGCAGCA-CG-CAG-A-G-GA-CG-ATCGG
129 CAACAGTCGGACCGAGGGTTGTGACAGCAGGACGCAGCAGCATCGACAGAATGAGAGCGTACCGG
23288662 GCTGATCCTCGGCTTGAGCATTATGCCACTCCGA-TCGGCTCAGCGCCCAAACAC-TT-ATTTCG
194 GCTGATCCTCGGCTTGAGCATTATGCCACTCCGACT-GGCTCAGCG-CC-AACACGTTCATTTCG
* * * *
23288724 T-GCGTT-ACCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATTGGA-TAGGATCGAAAGGTTG
256 TAG-GTTGA-CTTAGGCATACGGAGTTCATCCCCAGTCTAAGATTAGACCA-GACCG-AAGGTTG
*
23288785 CGGCAAC
317 CAGCAAC
* * * *
23288792 AGGATCGATAACACGTAGGGGGGATTGGGCCGATCCCTGGCTTGTGCATTCTGTCTTTCTGGCTG
1 AGGATCGATAGCACGTAGGGGGGATCGGGCCGATCCC-GGCTTGTGCATTCTGCCTTTCT-GATG
** * * ** *
23288857 GCTGAGTGCCTGTACGCTTATTTTGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
64 ATTGAGCGCCCGTACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
23288922 CA
129 CA
23288924 TACGGAGTTC
Statistics
Matches: 377, Mismatches: 62, Indels: 32
0.80 0.13 0.07
Matches are distributed among these distances:
315 1 0.00
316 32 0.08
317 181 0.48
318 5 0.01
319 4 0.01
320 2 0.01
322 1 0.00
323 1 0.00
324 3 0.01
325 2 0.01
326 6 0.02
328 2 0.01
329 134 0.36
330 3 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (323 bp):
AGGATCGATAGCACGTAGGGGGGATCGGGCCGATCCCGGCTTGTGCATTCTGCCTTTCTGATGAT
TGAGCGCCCGTACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
ACAGTCGGACCGAGGGTTGTGACAGCAGGACGCAGCAGCATCGACAGAATGAGAGCGTACCGGGC
TGATCCTCGGCTTGAGCATTATGCCACTCCGACTGGCTCAGCGCCAACACGTTCATTTCGTAGGT
TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATTAGACCAGACCGAAGGTTGCAGCAAC
Found at i:23288931 original size:26 final size:26
Alignment explanation
Indices: 23288895--23288947 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23288885 GTTGGCTTAG
*
23288895 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23288921 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23288947 G
1 G
23288948 AGCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23289330 original size:26 final size:26
Alignment explanation
Indices: 23289294--23289346 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23289284 GTTGGCTTAG
23289294 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
23289320 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23289346 G
1 G
23289347 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23289367 original size:399 final size:400
Alignment explanation
Indices: 23288603--23289387 Score: 1017
Period size: 399 Copynumber: 2.0 Consensus size: 400
23288593 TCCATGTCTA
* *
23288603 AGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAGGACGATCGGGCTGAT
1 AGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAGAACGATCGGGCCGAT
* * *
23288668 CCTCGGCTTGAGCATTATGCCACTCCGATCGGCTCAGCGCCCAAACACTTATTTCGTGCGTTACC
66 CCTCGGCTTGAGCATTATGCCACTCCGACCGGCTCAGCGCCCAAACACTCATTTCCTGCGTTACC
* ** * *
23288733 TTAGGCATACGAGTTCATTCCCAGTCTAAGATTGGATAGGATCGAAAGGTTGCGGCAACAGGATC
131 TTAGGCATACGAGTTCATTCCCAATCTAAGATCAGACAGAATCGAAAGGTTGCGGCAACAGGATC
* * * ** * * * *
23288798 GATAACACGTAGGGGGGATTGGGCCGATCCCTGGCTTGTGCATTCTGTCTTTCTGGCTGGCTGAG
196 GACAACACGCAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGCTGACTGAG
* * * * *
23288863 TGCCTGTACGCTTATTTTGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACG
261 CGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
* * * *
23288928 GAGTTCATTCCCAGTCTAAGAGCAGACCGGACCAAAGGTTGCGGTGGCAAGACTAGCAGCACGCA
326 GAGTTCATTCCCAGTCTAAGAGCAAACCGGACCAAAGGTTGCGATAGCAAGACCAGCAGCACGCA
23288993 GGGGGGATCG
391 GGGGGGATCG
* * * *
23289003 AGCCCCAGTCGGACCGA-GGTTGTGGTAGTGGGACC-GACAGCATGTAGAGAACGATCGGGCCGA
1 AGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCAG-CAGCACGCAGAGAACGATCGGGCCGA
* * *
23289066 TCCTCGGCTTGAGCATTATGCCACTCCGACCGGCTCAGTGCCCGAACACTCGTTTCCTGCGTTGA
65 TCCTCGGCTTGAGCATTATGCCACTCCGACCGGCTCAGCGCCCAAACACTCATTTCCTGCGTT-A
* *
23289131 -CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAA-CTG-AAGGTTGTGGCAACAG
129 CCTTAGGCATAC-GAGTTCATTCCCAATCTAAGATCAGACAGAATC-GAAAGGTTGCGGCAACAG
**** * * *
23289193 GATCGACAGTGTGCAGGGGGGATCGGGTCGGTCCCTGGCTTACGCATTCTGCCTCTCC-GATCGA
192 GATCGACAACACGCAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGCT-GA
*
23289257 CTGAGCGCCCGTA-GACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
256 CTGAGCGCCCGTACG-CTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * * *
23289321 CATATGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAAGGTTGCGATAGCAGGACCAGCAG
320 CATACGGAGTTCATTCCCAGTCTAAGAGCAAACCGGACCAAAGGTTGCGATAGCAAGACCAGCAG
23289386 CA
385 CA
23289388 GGATCGGTAG
Statistics
Matches: 329, Mismatches: 50, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
398 4 0.01
399 281 0.85
400 44 0.13
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (400 bp):
AGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAGAACGATCGGGCCGAT
CCTCGGCTTGAGCATTATGCCACTCCGACCGGCTCAGCGCCCAAACACTCATTTCCTGCGTTACC
TTAGGCATACGAGTTCATTCCCAATCTAAGATCAGACAGAATCGAAAGGTTGCGGCAACAGGATC
GACAACACGCAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGCTGACTGAG
CGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
GAGTTCATTCCCAGTCTAAGAGCAAACCGGACCAAAGGTTGCGATAGCAAGACCAGCAGCACGCA
GGGGGGATCG
Found at i:23290120 original size:159 final size:158
Alignment explanation
Indices: 23289695--23290120 Score: 378
Period size: 159 Copynumber: 2.7 Consensus size: 158
23289685 AAGCGTACAG
* * ** * *
23289695 AGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGTAGGATCGACAGCACGCAG
1 AGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACACAG
* * * * *
23289760 GG-GGGACTGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCCGACTAAGCGCCCGTACGC
66 GGAGGGACTGGGCCGAT-CCCGGCTTATGCATTCTGCCTCTCCGACCGACTAAGCGCCCGAACAC
* * * *
23289824 CCATTTCATGGGTTGGCTTAGGCATAGGG
130 CCATTTCATGCGTTGACTTAGGCATACGA
* * ** * * * * * *
23289853 AGCTCATTCC-ATGTCTAAG-CCCCAGTCAGACCGAGGGTTGTGGTAGCGGGACCGACAACATAT
1 AGTTCATTCCTA-GTCTAAGATCGGA-TCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACAC
* * * * * * *
23289916 AGAGTA-CGACTGGGCTGATCCCTGACTTGA-GCATTATGCCACTCCGACCGGCTCAA-CGCCCG
64 AG-GGAGGGACTGGGCCGATCCC-GGCTT-ATGCATTCTGCCTCTCCGACCGACT-AAGCGCCCG
* * *
23289978 AACACTCGTTTCGTGCGTTGACTTAGGCATACGA
125 AACACCCATTTCATGCGTTGACTTAGGCATACGA
* *
23290012 AGTTCATTCCTAGTCTAAGATTGGATCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACACAG
1 AGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACACAG
** *
23290077 GGAGGGACCAGGCCGATCCTCGGCTTATGCATTCTACCTCTCCG
66 GGAGGGACTGGGCCGATCC-CGGCTTATGCATTCTGCCTCTCCG
23290121 GTTGGCTGAG
Statistics
Matches: 200, Mismatches: 56, Indels: 23
0.72 0.20 0.08
Matches are distributed among these distances:
157 3 0.01
158 50 0.25
159 142 0.71
160 5 0.03
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
AGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACACAG
GGAGGGACTGGGCCGATCCCGGCTTATGCATTCTGCCTCTCCGACCGACTAAGCGCCCGAACACC
CATTTCATGCGTTGACTTAGGCATACGA
Found at i:23290193 original size:26 final size:26
Alignment explanation
Indices: 23290163--23290215 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23290153 GTTGGCTTAG
23290163 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23290189 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23290215 G
1 G
23290216 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23290571 original size:25 final size:26
Alignment explanation
Indices: 23290542--23290593 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
23290532 GTTGACTTAG
23290542 GCATACAGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
23290567 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
23290593 G
1 G
23290594 ATCAAATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:23295174 original size:21 final size:21
Alignment explanation
Indices: 23295150--23295201 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
23295140 TTGGTTGAAC
23295150 GGTCTCGATCTCTATCCTTGG
1 GGTCTCGATCTCTATCCTTGG
23295171 GGTCTCGATCTCTATCCTTGG
1 GGTCTCGATCTCTATCCTTGG
**
23295192 ACTCTCGATC
1 GGTCTCGATC
23295202 ACGGTCTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.12, C:0.31, G:0.21, T:0.37
Consensus pattern (21 bp):
GGTCTCGATCTCTATCCTTGG
Found at i:23297816 original size:158 final size:158
Alignment explanation
Indices: 23297424--23297819 Score: 386
Period size: 158 Copynumber: 2.5 Consensus size: 158
23297414 TTGCGCATTC
* * * *
23297424 TGCCTCTCTGACC-AGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
1 TGCCTCTCCGACCGA-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
* * * * * * * * *
23297488 CATTCCATGTCTAAGCCCTAGCGGATCGAGGGTTGTGCCAGCGGGATCGGCAGCATACAGAGGGG
65 CATTCCATGTCTAAGCCCGAGCGAACCGAGGGTAGCGACAGCAGGATCGACAGCACACAGAGGGG
* ****
23297553 GATCGGACCGATCCCCGGCTTGTGCATTA
130 GATAGGACCGATCCCCGGCTTACAAATTA
* * * ** * * * *
23297582 TGCCTCTCCGACCGGCTCAGTGCCCATACGATCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
1 TGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
* * * * *
23297647 ATTCCCA-GTCTAAGATCGGATCGAACCGAGGGTAGCGACAGTAGGATCGACAGCACGCA-AGGG
66 ATT-CCATGTCTAAG-CCCGAGCGAACCGAGGGTAGCGACAGCAGGATCGACAGCACACAGAGGG
* * *
23297710 GGACTAGG-CTGATCCCTGGCTTACAAATTT
129 GGA-TAGGACCGATCCCCGGCTTACAAATTA
* *
23297740 TGCCTCTCCGACTGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTC
1 TGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
*
23297805 ATTCAATGTCTAAGC
66 ATTCCATGTCTAAGC
23297820 ATACAGAGTT
Statistics
Matches: 185, Mismatches: 48, Indels: 11
0.76 0.20 0.05
Matches are distributed among these distances:
157 2 0.01
158 147 0.79
159 36 0.19
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
TGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCCCGAGCGAACCGAGGGTAGCGACAGCAGGATCGACAGCACACAGAGGGGG
ATAGGACCGATCCCCGGCTTACAAATTA
Found at i:23298180 original size:26 final size:26
Alignment explanation
Indices: 23298150--23298203 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
23298140 TGGGTTGACT
23298150 TAGGCATACGCAGTTCA-TCCACAGTC
1 TAGGCATACGCAGTTCATTCC-CAGTC
*
23298176 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGCAGTTCATTCCCAGTC
23298202 TA
1 TA
23298204 AGATCCGACC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TAGGCATACGCAGTTCATTCCCAGTC
Found at i:23298542 original size:159 final size:158
Alignment explanation
Indices: 23298176--23298561 Score: 377
Period size: 159 Copynumber: 2.4 Consensus size: 158
23298166 ATCCACAGTC
** * * *
23298176 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACTGAGGGTTACGGTAGCAGGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACTGGACAGAGGGTTGCGGCAGCAGGATCG
* * * *
23298241 ACAGCACGCAGAGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTTTTCGGCCGACTAAGC
66 ACAGCACGCAGAGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCCGCCGACTAAGC
*
23298306 ACCCGCACGCCCGTTTCGTGGGTTGGCT
131 ACCCGCACGCCCGTTTCGTGGGTTGACT
* * * * * * * *
23298334 TAGGCATAGGGAGTTCATTCCAAGTCTATG-CCCCAGTCGGACAAAGGGTTGTGGCAGTC-GGA-
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACT-GGACAGAGGGTTGCGGCAG-CAGGAT
* * * * * * * *
23298396 CAGGCAGCATGCAGAGGGGGATC-GAGTC-ATTCCCCGGCTTGTGCATTATGCCTCTCCCGCTGG
64 C-GACAGCACGCAGA-GGGGACCAG-GCCGA-TCCCCGACTTGCGCATTATGCCTCTCCCGCCGA
* * * *
23298459 CTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACT
125 CTAAGCACCCGCACGCCCGTTTCGTGGGTTGACT
* * * *
23298493 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCAAGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACTGGACAGAGGGTTGCGGCAGCAGGATCG
23298558 ACAG
66 ACAG
23298562 AATATAGGGT
Statistics
Matches: 176, Mismatches: 43, Indels: 17
0.75 0.18 0.07
Matches are distributed among these distances:
157 4 0.02
158 57 0.32
159 111 0.63
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACTGGACAGAGGGTTGCGGCAGCAGGATCG
ACAGCACGCAGAGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCCGCCGACTAAGC
ACCCGCACGCCCGTTTCGTGGGTTGACT
Found at i:23298686 original size:26 final size:26
Alignment explanation
Indices: 23298655--23298707 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23298645 GTTGGCTTAG
23298655 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCACA-GTCTAA
23298681 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
23298707 G
1 G
23298708 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:23299066 original size:26 final size:26
Alignment explanation
Indices: 23299036--23299088 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23299026 GTAGACTTAG
*
23299036 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
23299062 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
23299088 G
1 G
23299089 ATCGAATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23299406 original size:882 final size:854
Alignment explanation
Indices: 23297260--23299591 Score: 2660
Period size: 882 Copynumber: 2.7 Consensus size: 854
23297250 GTCGGCTAAG
* * *
23297260 CGCCCACACCCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAAACG
1 CGCCCACACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACG
* * * ** *
23297325 AAGTTCATTCCTAGTCTAAGATTGGACTGGACTGAGGGTTACGGCAGCAGGATCGGTAGCACCCA
66 -AGTTCATTCCCAGTCTAAGA-TCGACTAGACTGAGGGTTACGGCAGCAGGATCGACAGCACGCA
* ** * *
23297390 GGGGGGACCGGGCCAATTGTCGACTTGCGCATTCTGCCTCTCTGACCAGCTGAGCACCCGCACGC
129 -GGGGGACCGGGCCGA-TCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGC
* *
23297455 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCGGATCGAGGG
192 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGGACCGAGGG
* *
23297520 TTGTGCCAGCGGGATCGGCAGCA-TACAGAGGGGGATCGGACCGATCCCCGGCTTGTGCATTATG
257 TTGTGGCAGCGGGA-CGGCAGCAGTA-A-AGGGGGATCGGGCCGATCCCCGGCTTGTGCATTATG
* * * *
23297584 CCTCTCCGACCGGCTCAGTGCCCAT--ACGATCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
319 CCTCTCCGATCGGCTCA--GCACATGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * *
23297647 ATTCCCAGTCTAAGATCGGA-TCGAACCGAGGGTAGCGACAGTAGGATCGACAGCACGCAA-GGG
382 ATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGATAGCAGGATCGACAGCA--TAAGGGG
* * *
23297710 GGA-CTAGGCTGATCCCTGGCTTACAAATTTTGCCTCTCCGACTGACTGAGCGCCCGCACGCTCG
444 GGATC-GGGCTGATCCCTGGCTTACAAATTTTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCG
* * * *
23297774 TTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCAATGTCTAAGCATACAGAGTTCATTCCCAG
508 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
* ** * *
23297839 TCTAAGATCAGACCGAATCGAGGGTTGTGACAGCAGGACCAGCAGCAAGATCGACAGCACGCAGG
573 TCTAAGATCAGACCGAACCGAGCATTGCGACAGCAGGACCAGCAGCAAGATCGACAGCACACAGG
*
23297904 GGGGACCGGGCCGATCCCCGAGTTGCACATTCTACCTCTCCGATCGGCTGAGTGCCCACACGCTA
638 GGGGACCGGGCCGATCCCCGAGTTGCACATTCTACCTCTCCGATCGACTGAGTGCCCACACGCTA
** * *
23297969 GTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACTAAACCTAGGGT
703 GTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGAGGGT
* ** *
23298034 TGGGGTAGTGGGACCACCATCGGCAGCACGCAGAAGGGGATCGGGTCGATCCTTGGCTTATGTAT
768 TGGGGCAGCAGGACCACCATCGACAGCACGCAGAAGGGGATCGGGTCGATCCTTGGCTTATGTAT
* *
23298099 TACGCATCTCCGGTCAGCTGAC
833 TACGCATCTCCGATCAGCTGAA
* * * *
23298121 CACCCACACACTCGTTTCATGGGTTGACTTAGGCATACGCAGTTCATCCACAGTCTAGGCATACG
1 CGCCCACACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC-
* *
23298186 GAGTTCATTCCCAGTCTAAGATCCGACCAGACTGAGGGTTACGGTAGCAGGATCGACAGCACGCA
65 GAGTTCATTCCCAGTCTAAGAT-CGACTAGACTGAGGGTTACGGCAGCAGGATCGACAGCACGCA
* * * * * *
23298251 GAGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTTTTCGGCCGACTAAGCACCCGCACGC
129 G-GGGGACCGGGCCGAT-CCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGC
* * * **
23298316 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTATGCCCCAGTCGGACAAAGG
192 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CGGACCGAGG
* * * *
23298381 GTTGTGGCAGTC-GGACAGGCAGCATGCAGAGGGGGATCGAGTC-ATTCCCCGGCTTGTGCATTA
256 GTTGTGGCAG-CGGGAC-GGCAGCA-GTAAAGGGGGATCGGGCCGA-TCCCCGGCTTGTGCATTA
* * ** *
23298444 TGCCTCTCCCGCT-GGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTT
317 TGCCTCT-CCGATCGGCTCAGCACATGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
23298508 CATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCAAGATCGACAGAATATAGGGTG
381 CATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGATAGCAGGATCGACAGCATA-AGGG-G
* * * * * **
23298573 GGATCGGGCTGAACCCTGGCATACACATTCTGCCTCTCCGGCCGGCTGAGCGCCCATACGCTCGT
444 GGATCGGGCTGATCCCTGGCTTACAAATTTTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGT
* *
23298638 TTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCACAGT
509 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * ** *
23298703 CTAAGATCGGACCGGACCGAGCATTGCGACAGCAGGACCAGTAGCAGGATCGGTAGCTCACAGGC
574 CTAAGATCAGACCGAACCGAGCATTGCGACAGCAGGACCAGCAGCAAGATCGACAGCACACAGG-
* * * * * * *
23298768 GGGGACTGGGTCGATCCCCG-GCTTGCGCATTCTGCCTTTCTGA-CTGACTGAGTGCCCGCACGC
638 GGGGACCGGGCCGATCCCCGAG-TTGCACATTCTACCTCTCCGATC-GACTGAGTGCCCACACGC
* * *
23298831 TCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
701 TAGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGAGG
* * *
23298896 GTTGTGGCAGCAGGATCGACAGCGAGATCGACAGCACGCAGAAGGGGATCGGGTTGATCCCCAGC
766 GTTGGGGCAGCAGGA-C--CA-C--CATCGACAGCACGCAGAAGGGGATCGGGTCGAT---C--C
* *
23298961 TTGCGCATTATGCCTCTCTGACCAGCCTCTCCGATCAGCTGAA
820 TTG-GC-TTATG--TAT-T-A-C-GCATCTCCGATCAGCTGAA
* * *
23299004 CGCCCGCACGCTCGTTTCATGGGTAGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACA
1 CGCCCACACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC-
* * ** *
23299069 GAGTTCATTCCCAGTCTAAGATCGAATTAGACCGAGGGTTGTGGCAGCAGGATCGACGGCACGCA
65 GAGTTCATTCCCAGTCTAAGATCG-ACTAGACTGAGGGTTACGGCAGCAGGATCGACAGCACGCA
* * * * * *
23299134 GGGGTGACCGGGCCGGTCCCAGGCTTGTGCATTCTGCCTCTCCAACTGGCTGAGCACCCGC-CAC
129 GGGG-GACCGGGCCGATCCC-GACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGC
* * *
23299198 CCATTTCATGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
192 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CGGACCGAGG
* * * * *
23299263 GTTGTGGCAGCGGGACGGGCAGCACGTAAAAGGGTACCGGGCCGATCCCCGACTTGCGCATTATG
256 GTTGTGGCAGCGGGAC-GGCAGCA-GTAAAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTATG
* * * *
23299328 CCTCTTCGATCGACGCAGCACATGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCAT
319 CCTCTCCGATCGGCTCAGCACATGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* ** * *
23299393 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCTGCT-GCAGGATCGACAGCATGCAAGGGCGG
384 TCCCAGTCTAAGATCGGACTGGACCGAGGGTTGC-GATAGCAGGATCGACAGCAT--AAGGGGGG
* * ** * * * *
23299457 ATCGGG-TCGATCCCTGACTTGCGTATTTTGCCTCT-CTACCCTGCTGAGCGCTCGCACGCTTGT
446 ATCGGGCT-GATCCCTGGCTTACAAATTTTGCCTCTCCGA-CCGGCTGAGCGCCCGCACGCTCGT
* * *
23299520 TTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAATCCCAAT
509 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGT
23299585 CTAAGAT
574 CTAAGAT
23299592 TTTGAGCCAC
Statistics
Matches: 1229, Mismatches: 191, Indels: 81
0.82 0.13 0.05
Matches are distributed among these distances:
860 7 0.01
861 214 0.17
862 152 0.12
863 172 0.14
864 122 0.10
865 1 0.00
867 2 0.00
868 1 0.00
870 30 0.02
873 1 0.00
875 4 0.00
876 2 0.00
877 5 0.00
879 2 0.00
880 1 0.00
881 7 0.01
882 328 0.27
883 177 0.14
884 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (854 bp):
CGCCCACACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACG
AGTTCATTCCCAGTCTAAGATCGACTAGACTGAGGGTTACGGCAGCAGGATCGACAGCACGCAGG
GGGACCGGGCCGATCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCCCGT
TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGGACCGAGGGTTGT
GGCAGCGGGACGGCAGCAGTAAAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCC
GATCGGCTCAGCACATGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCGGACTGGACCGAGGGTTGCGATAGCAGGATCGACAGCATAAGGGGGGATCGGGCTGA
TCCCTGGCTTACAAATTTTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CGAACCGAGCATTGCGACAGCAGGACCAGCAGCAAGATCGACAGCACACAGGGGGGACCGGGCCG
ATCCCCGAGTTGCACATTCTACCTCTCCGATCGACTGAGTGCCCACACGCTAGTTTCATGGGTTG
GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGAGGGTTGGGGCAGCAGGA
CCACCATCGACAGCACGCAGAAGGGGATCGGGTCGATCCTTGGCTTATGTATTACGCATCTCCGA
TCAGCTGAA
Found at i:23299445 original size:159 final size:157
Alignment explanation
Indices: 23299062--23299563 Score: 380
Period size: 159 Copynumber: 3.2 Consensus size: 157
23299052 CCCAGTCTAA
* **
23299062 GCATACAGAGTTCATTCCCAGTCTAAGATC-GAATTAGACCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * * *
23299126 GGCACGCAGGGGTGACCGGGCCGGTCCCAGGCTTGTGCATTCTGCCTCTCCAACTGGCTGAGCAC
65 AGCACGAAAGGGTGACCGGGCCGATCCCAGACTTGCGCATTATGCCTCTCCAACTGACTGAGCAC
* *
23299191 CCGCCACCCATTTCATGGGTTGGCTTAG
130 ACGCCACCCATTTCATGGGTTGACTTAG
* * ** *
23299219 GTATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCGGGA-CGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGCAGGATC-G
* * * *
23299281 GCAGCACGTAAAAGGGT-ACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGA-TCGAC-G
63 ACAGCACG--AAAGGGTGACCGGGCCGATCCCAGACTTGCGCATTATGCCTCTCCAACT-GACTG
* * * *
23299343 CAGCACATG-CACGCTCGTTTCGTGGGTTGACTTAT
125 -AGCACACGCCAC-C-CATTTCATGGGTTGACTTAG
*
23299378 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCT-GCTGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG-TGGCAGCAGGATCGAC
* * * * * * * * * *
23299442 AGCATGCAAGGGCGGATCGGGTCGATCCCTGACTTGCGTATTTTGCCTCTCTACCCTG-CTGAGC
65 AGCACGAAAGGG-TGACCGGGCCGATCCCAGACTTGCGCATTATGCCTCTCCA-ACTGACTGAGC
* * ** * **
23299506 GCTCG-CACGCTTGTTTCGTGGGTTGGTTTAG
128 ACACGCCAC-C-CATTTCATGGGTTGACTTAG
23299537 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
23299564 CATACGGAGT
Statistics
Matches: 273, Mismatches: 52, Indels: 38
0.75 0.14 0.10
Matches are distributed among these distances:
156 4 0.01
157 60 0.22
158 48 0.18
159 153 0.56
160 7 0.03
161 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGAAAGGGTGACCGGGCCGATCCCAGACTTGCGCATTATGCCTCTCCAACTGACTGAGCACA
CGCCACCCATTTCATGGGTTGACTTAG
Found at i:23299587 original size:26 final size:26
Alignment explanation
Indices: 23299537--23299589 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23299527 GTTGGTTTAG
* *
23299537 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCATATCTAA
23299563 GCATACGGAGTTCAATCCCA-ATCTAA
1 GCATACGGAGTTC-ATCCCATATCTAA
23299589 G
1 G
23299590 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATATCTAA
Found at i:23300289 original size:26 final size:26
Alignment explanation
Indices: 23300259--23300311 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23300249 GTTGACTTAG
23300259 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23300285 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23300311 G
1 G
23300312 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23300796 original size:26 final size:26
Alignment explanation
Indices: 23300760--23300809 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
23300750 TGGCTTAGGA
*
23300760 ATACCGAGTTCATT-CCATGTCTAACC
1 ATACAGAGTTCATTCCCA-GTCTAACC
23300786 ATACAGAGTTCATTCCCAGTCTAA
1 ATACAGAGTTCATTCCCAGTCTAA
23300810 GATCAGATCG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAACC
Found at i:23301151 original size:171 final size:170
Alignment explanation
Indices: 23300827--23301151 Score: 404
Period size: 171 Copynumber: 1.9 Consensus size: 170
23300817 TCGGACCAAA
* * * * *
23300827 GGTTGTGGCAGCAGGACCAGCAATAGGATCGACAGCACGCCGGGGGGGACCGGGTCGATCCCGGC
1 GGTTGTGGCAGCAGGACCAGCAATAGGATCGACAGCACGCAGAGGGGGACCGGCTCAATCCCGAC
* * * * * * **
23300892 TTGTGCATTCTGCCTCTTCGACCGGCTGAGTGCCTGTATGCTCGTTTGATGGGTTGGCTTTGGCA
66 TTATGCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCGTTTGATGGGTTAACTTTGGCA
*
23300957 TACGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACAGAG
131 TACGGAGTTCATCCCATGTCTAAGCCCTAGCCAGACAGAG
* * * *
23300997 GGTTGTGGCAGCAGGACCGGCAGTGGGATCGGCAGCACGCAGAGGGGGACCAGGCT-AATCCTCG
1 GGTTGTGGCAGCAGGACCAGCAATAGGATCGACAGCACGCAGAGGGGGACC-GGCTCAATCC-CG
**
23301061 ACTTATGCATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGA-GGGTTAACTTTG
64 ACTTATGCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCGTTT-GATGGGTTAACTTTG
*
23301125 GCATATGGAGTTCATCCCCA-GTCTAAG
128 GCATACGGAGTTCAT-CCCATGTCTAAG
23301152 ATTGAATCGG
Statistics
Matches: 130, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
170 49 0.38
171 76 0.58
172 5 0.04
ACGTcount: A:0.18, C:0.26, G:0.33, T:0.23
Consensus pattern (170 bp):
GGTTGTGGCAGCAGGACCAGCAATAGGATCGACAGCACGCAGAGGGGGACCGGCTCAATCCCGAC
TTATGCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCGTTTGATGGGTTAACTTTGGCA
TACGGAGTTCATCCCATGTCTAAGCCCTAGCCAGACAGAG
Found at i:23301619 original size:159 final size:158
Alignment explanation
Indices: 23301449--23301809 Score: 390
Period size: 159 Copynumber: 2.3 Consensus size: 158
23301439 TGCATGCCCA
* * **
23301449 TTTCGTGGGTTGGCTTAGGCCTAGGGAGTTGATTCCATGTCTAAG-CCCCATTCAGACTGAGGGT
1 TTTCGTGGGTTGGCTTA-GCCTACGGAGTTCATTCCATGTCTAAGACCCCA-TCAGACCAAGGGT
** *
23301513 TGTGGCAGCAAAA-CTGGCAGCACGCAGAGG-GGGACCGGGCCGATCCCCGGCTTGCGCATTATG
64 TGCAGCAGCAAAATC-GACAGCACGCAG-GGCGGGACCGGGCCGATCCCCGGCTTGCGCATTATG
* *
23301576 CCTCTTCGGTCGGCTCAGCGCCCGCACGCTCG
127 CCTCTTCGATCGGCTCAGCACCCGCACGCTCG
* * * ****
23301608 TTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAGATTGGATCAGACCAAGGGT
1 TTTCGTGGGTTGGCTTA-GCCTACGGAGTTCATT-CCATGTCTAAGACCCCATCAGACCAAGGGT
** * * * *
23301672 TGCAGCAGCAGGATCGACAGCATGCAGGGCGGGTCCGGGCTGATCCCCGGCTTGCGCATTCTGCC
64 TGCAGCAGCAAAATCGACAGCACGCAGGGCGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCC
* * * *
23301737 TCTTCGATCGGCTGAGCACCCGTATGCTCT
129 TCTTCGATCGGCTCAGCACCCGCACGCTCG
23301767 TTTCGTGGGTTGGCTTAGCCGTACGG-GTTCATTCCATGTCTAA
1 TTTCGTGGGTTGGCTTAGCC-TACGGAGTTCATTCCATGTCTAA
23301810 AGATACGGAG
Statistics
Matches: 166, Mismatches: 30, Indels: 13
0.79 0.14 0.06
Matches are distributed among these distances:
157 3 0.02
158 17 0.10
159 141 0.85
160 5 0.03
ACGTcount: A:0.17, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
TTTCGTGGGTTGGCTTAGCCTACGGAGTTCATTCCATGTCTAAGACCCCATCAGACCAAGGGTTG
CAGCAGCAAAATCGACAGCACGCAGGGCGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTC
TTCGATCGGCTCAGCACCCGCACGCTCG
Found at i:23301818 original size:501 final size:505
Alignment explanation
Indices: 23300187--23301838 Score: 1409
Period size: 501 Copynumber: 3.2 Consensus size: 505
23300177 CCATCCGTTC
* * * * *
23300187 GATCCCCGACTTGCGCATCCTGCCTC-TCTGGTCGGCTGAGC-GCTCGCACGCTCGTTTCATGGG
1 GATCCCCGGCTTGCGCATTCTGCCTCTTC-GCTCGGCTGAGCACCT-GCACGCTCGTTTCGTGGG
* * *
23300250 TTGACTTAGGCATACGGAGTTCATCCCCA-GTCT-AAGCATACGGAGTTCATTCCCAGTCTAAGA
64 TTGGCTTAGGCATACGG-GTTCAT-TCCATGTCTAAAG-ATACGGAGTTCATTCCTAGTCTAAGA
* ** * * * * *
23300313 TCAGACTGGATC-AAGGT-T-TGCA--ACAGCA-A-GATCGACAGCACG-CAAAGTGTACCG-GA
126 TCAAACCAGACCAAAGGTGTGAGCAGGACAG-ATAGGATCGACAGCACGCCAAGGGGGACCGAG-
* * * * * ** ** ** ** *
23300369 CCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGTC-GACTGAGTGCCCGCACACCTGTTTCATGG
189 CCAAT-CCCGGCTTACGCATTCTGCCTCTCC-GACAGGCTGAACGCATGCATGCCCATTTCGTGG
*
23300433 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-TCGAGGGTTGTGGCAG
252 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACT-GAGGGTTGTGGCAG
*** * * * ** * *
23300497 CGGGACCGGCAGCACGCAAAGGGGGACTGGGCCAATCCTTTGCTTGCGCATTACGCCTCTCCGAT
316 CAAAACTGGCAGCACGCAGAGGGGGACCGGGCCAATCCTCGGCTTGCGCATTATGCCTCTCCGGT
* * * * *
23300562 CGGCTCAACGCCCTCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCCAGTCTA
381 CGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTA
* * * * * *
23300627 AGATCGGATCAGACCAAGGGTTACGGCAGTAAGATCGACAGCACGTAGGGGGACCGAGAT
446 AGATTGGATCAGACCAAGGGTTACAGCAGTAGGATCGACAGCACGCAGGGGGACCGGGCT
** * * * *
23300687 GATCATCGGCTTACGTA-TCTGCCTCTCTGGCT-TGCTGAGCACCTGCACGCTCGTTTCGTGGGT
1 GATCCCCGGCTTGCGCATTCTGCCTCT-TCGCTCGGCTGAGCACCTGCACGCTCGTTTCGTGGGT
* * ** * *
23300750 TGGCTTAGGAATACCGAGTTCATTCCATGTCTAACCATACAGAGTTCATTCCCAGTCTAAGATCA
65 TGGCTTAGGCATA-CGGGTTCATTCCATGTCTAAAGATACGGAGTTCATTCCTAGTCTAAGATCA
* * * ** *
23300815 GATCGGACCAAAGGTTGTGGCAGCAGGACCAGCAATAGGATCGACAGCACGCCGGGGGGGACCGG
129 AACCAGACCAAAGG-TGT-G-AGCAGGA-CAG--ATAGGATCGACAGCACGCCAAGGGGGACCGA
* * ** * * ** * * * *
23300880 GTCGATCCCGGCTTGTGCATTCTGCCTCTTCGACCGGCTGAGTGCCTGTATGCTCGTTT-GATGG
188 GCCAATCCCGGCTTACGCATTCTGCCTCTCCGACAGGCTGAACGCATGCATGCCCATTTCG-TGG
* * * *
23300944 GTTGGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACAGAGGGTTGTGGCAGC
252 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGC
* * * **
23301009 AGGACCGGCAGTGGGA-TCGGCAGCACGCAGAGGGGGACCAGGCTAATCCTCGACTTATGCATTA
317 A--A-----A-----ACT-GGCAGCACGCAGAGGGGGACCGGGCCAATCCTCGGCTTGCGCATTA
* * * * **
23301073 TGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGAGGGTTAACTT-TGGCATATGGAGTT
369 TGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAT-GCATACAGAGTT
* * * ** ** * * * * *
23301137 CATCCCCAGTCTAAGATTGAATCGGACTGAGGAATACACCAGTAGGATTGGCAGCACACAAAGGG
433 CATTCCCAGTCTAAGATTGGATCAGACCAAGGGTTACAGCAGTAGGATCGACAGCACGC-AGGGG
23301202 GACCGGGCT
497 GACCGGGCT
* * * * * * * * * * * *
23301211 AATCCCTGGCTTGCACATTTTACCTCTCCGCCCGGTTAAGCGCATGCACGCTCGTTTCATGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTTCGCTCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTT
* *
23301276 GACTTAGGCATATGGAGTTCATTCCCA-GTCT-AAGAATACGGAGTTCATTCCTAGTCTAAGATC
66 GGCTTAGGCATACGG-GTTCATT-CCATGTCTAAAG-ATACGGAGTTCATTCCTAGTCTAAGATC
* * * * *
23301339 AAACCAGACC-GAGG-GT-TGC-GG-TAG-TAGGATCGACAGCACG-TAAGGGGGATCGAGCCAA
128 AAACCAGACCAAAGGTGTGAGCAGGACAGATAGGATCGACAGCACGCCAAGGGGGACCGAGCCAA
* *
23301397 TCCTCGGCTTACGCATTCTGCCTCTCCGGCAGGTTGAACGCATGCATGCCCATTTCGTGGGTTGG
193 TCC-CGGCTTACGCATTCTGCCTCTCCGACAGGCTGAACGCATGCATGCCCATTTCGTGGGTTGG
* * **
23301462 CTTAGGCCTAGGGAGTTGATTCCATGTCTAAGCCCCATTCAGACTGAGGGTTGTGGCAGCAAAAC
257 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCAAAAC
* * *
23301527 TGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTC
322 TGGCAGCACGCAGAGGGGGACCGGGCCAATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGGCTC
23301592 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAGATTG
387 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAGATTG
* * * *
23301657 GATCAGACCAAGGGTTGCAGCAGCAGGATCGACAGCATGCAGGGCGGGTCCGGGCT
452 GATCAGACCAAGGGTTACAGCAGTAGGATCGACAGCACGCA-GG-GGGACCGGGCT
* * * * *
23301713 GATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCACCCGTATGCTCTTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTTCGCTCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTT
* *
23301778 GGCTTAGCCGTACGGGTTCATTCCATGTCTAAAGATACGGAGTTCATTCCTAGTCTAAGAT
66 GGCTTAGGCATACGGGTTCATTCCATGTCTAAAGATACGGAGTTCATTCCTAGTCTAAGAT
23301839 TTTGAGCCAC
Statistics
Matches: 901, Mismatches: 200, Indels: 101
0.75 0.17 0.08
Matches are distributed among these distances:
498 3 0.00
499 87 0.10
500 27 0.03
501 181 0.20
502 75 0.08
505 3 0.00
506 1 0.00
507 1 0.00
508 3 0.00
509 1 0.00
510 3 0.00
511 115 0.13
512 25 0.03
513 117 0.13
514 1 0.00
516 2 0.00
518 2 0.00
519 2 0.00
522 2 0.00
523 132 0.15
524 28 0.03
525 87 0.10
526 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (505 bp):
GATCCCCGGCTTGCGCATTCTGCCTCTTCGCTCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTT
GGCTTAGGCATACGGGTTCATTCCATGTCTAAAGATACGGAGTTCATTCCTAGTCTAAGATCAAA
CCAGACCAAAGGTGTGAGCAGGACAGATAGGATCGACAGCACGCCAAGGGGGACCGAGCCAATCC
CGGCTTACGCATTCTGCCTCTCCGACAGGCTGAACGCATGCATGCCCATTTCGTGGGTTGGCTTA
GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCAAAACTGGC
AGCACGCAGAGGGGGACCGGGCCAATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAGATTGGATC
AGACCAAGGGTTACAGCAGTAGGATCGACAGCACGCAGGGGGACCGGGCT
Found at i:23303239 original size:26 final size:26
Alignment explanation
Indices: 23303203--23303255 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23303193 GTTGACTTAG
23303203 GCATACGGAGTTCATCCCCAGTATAA
1 GCATACGGAGTTCATCCCCAGTATAA
* *
23303229 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTATAA
23303255 G
1 G
23303256 ATCGGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTATAA
Found at i:23303612 original size:159 final size:157
Alignment explanation
Indices: 23303229--23303729 Score: 474
Period size: 158 Copynumber: 3.2 Consensus size: 157
23303219 CCCAGTATAA
* * * * *
23303229 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATAGGACCGAGGGTTACGACAGCAGGATCGAC
1 GCATACGGAGTTCA-TCCCATGTCTAAGATCGGATAGGACTGAAGGTTGCGATAGCAGGATCGAT
* * * *
23303293 AGCACGCAGGGGGGACCGGGCCGATCCC-GGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCAC
65 AGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCAC
* * *
23303357 CCGCACGCCCGTTTCATTGGTTTGCTTAG
130 CTGCACGCTCGTTTCA-TGGGTTGCTTAG
* * * ** *** * * * * * * *
23303386 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCATCCAAATCAAGGGTTGTGCTAGCGGGACCGGT
1 GCATACGGAGTTCATCCCATGTCTAAGATCGGATAGGACTGAA-GGTTGCGATAGCAGGATCGAT
* * *
23303450 AGCACGCAGAAGGGGATCGGTTCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCA
65 AGCACGCAG-GGGGGATCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCA
*
23303515 CCTGCATGCTCGTTTCATGGGTTGACTTAG
129 CCTGCACGCTCGTTTCATGGGTTG-CTTAG
* * *
23303545 GCATACAGAGTTCACTCCCA-GTCTAAGATTGGACT-GGACTGAAGGTTGCGGTAGCAGGATCGA
1 GCATACGGAGTTCA-TCCCATGTCTAAGATCGGA-TAGGACTGAAGGTTGCGATAGCAGGATCGA
* * * * * * *
23303608 TAGCACGCAGGGGGGATCGGGTCGGT-GCTCGGCTTGCACATTTTGCCTGTCCAATCGGCTGAGC
64 TAGCACGCAGGGGGGATCGGGTCGATCCCT-GGCTTGCGCATTATGCCTCTCCGACCGGCTGAGC
* * *
23303672 GCCTGCACGCTCATTTCGTGGGTTGGCTTAG
128 ACCTGCACGCTCGTTTCATGGGTT-GCTTAG
*
23303703 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATCCCATGTCTAAG
23303730 CATATGGAGT
Statistics
Matches: 270, Mismatches: 63, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
156 9 0.03
157 48 0.18
158 107 0.40
159 96 0.36
160 9 0.03
161 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATCCCATGTCTAAGATCGGATAGGACTGAAGGTTGCGATAGCAGGATCGATA
GCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCACC
TGCACGCTCGTTTCATGGGTTGCTTAG
Found at i:23303739 original size:26 final size:26
Alignment explanation
Indices: 23303703--23303755 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23303693 GTTGGCTTAG
23303703 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
23303729 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23303755 G
1 G
23303756 TTCAGACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23304082 original size:158 final size:159
Alignment explanation
Indices: 23303798--23304084 Score: 364
Period size: 158 Copynumber: 1.8 Consensus size: 159
23303788 CCAGCAGCAG
* * * * *
23303798 GATCGACAGCACGTAGGGGGGTATCGGTCCGATCCCCATCTTGTGCATTCTGCCTCTCCGGCCAG
1 GATCGACAGCACGCAGGGGGGTACCGGGCCGATCCCCAGCTTGTGCATTATGCCTCTCCGGCCAG
* * * *
23303863 CTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
66 CTCAACGCCCACACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
23303928 CCTAGCTGAACCAAGGGTTGTGGCAGCGA
131 CCTAGCTGAACCAAGGGTTGTGGCAGCGA
* * * * *
23303957 GATCGGCAGCACGCAGAGGGGG-ACCGGGCCGATCCCCGGCTTG-GCATTATGCCTTTTCTGCCA
1 GATCGACAGCACGCAG-GGGGGTACCGGGCCGATCCCCAGCTTGTGCATTATGCCTCTCCGGCCA
** * * *
23304020 GCTCAACGCCCGTACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAA
65 GCTCAACGCCCACACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAA
23304084 G
129 G
23304085 ATCGAATCAG
Statistics
Matches: 107, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
157 1 0.01
158 70 0.65
159 31 0.29
160 5 0.05
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (159 bp):
GATCGACAGCACGCAGGGGGGTACCGGGCCGATCCCCAGCTTGTGCATTATGCCTCTCCGGCCAG
CTCAACGCCCACACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
CCTAGCTGAACCAAGGGTTGTGGCAGCGA
Found at i:23304244 original size:512 final size:513
Alignment explanation
Indices: 23303162--23304439 Score: 1494
Period size: 512 Copynumber: 2.5 Consensus size: 513
23303152 GCCTCTCTGG
* * * * * *
23303162 TCGGCTGAGCGCCCGCAGGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTA
1 TCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCAT-TCCATGTC
* * * * * *
23303226 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TAGGACCGAGGGTT-----A-C--G---
65 TAAGCATACAGAGTTCATTCCCACTCTAAGATCGAACCA-GACCAAGGCTTGCGACAGCAGGACC
* *
23303279 A-CAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTC
129 AGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGTCTTGTGCATTCTGCCTCTC
* * * *
23303342 CGACCGACTGAGCACCCGCACGCCCGTTTCATTGGTTTGCTTAGGCATAGGGAGTTCATTCCATG
194 CGGCCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* * * * * **
23303407 TCTAAGCCCCATCCAAATCAAGGGTTGTGCTAGCGGGACCGGTAGCACGCAGAAGGGGATCGGTT
259 TCTAAGCCCCAGCCAAACCAAGGGTTGTGCTAGCGAGACCGGCAGCACGCAGAAGGGGACCGGGC
* * * * *
23303472 CGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCACCTGCATGCTCGTTTCATGGGT
324 CGATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTCAACACCCGCACGCTCGTTTCATGGGT
* * * *
23303537 TGACTTAGGCATACAGAGTTCACTCCCAGTCTAAGATTGGACTGGACTGAAGGTTGCGGTAGCAG
389 TGACTTAGGCATACAGAGTTCACTCCCAGTCTAAGATCGAACTAGACTGAAGGTTGCGATAGCAG
* * * * * *
23303602 GATCGATAGCACGCAGGGGGGATCGGGTCGGTGCTCGGCTTGCACATTTTGCCTGTCCAA
454 GATCGACAGCACGCAGGGGGGACCGGGTCGGTCCCCGACTTGCACATTTTGCCTCTCCAA
* *
23303662 TCGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
1 TCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
** * * * *
23303727 AAGCATATGGAGTTCATTCCCAGTCTAAGTTC-AGA-CAGGACCAAGGGTTGCGGCAGCAGGACC
66 AAGCATACAGAGTTCATTCCCACTCTAAGATCGA-ACCA-GACCAAGGCTTGCGACAGCAGGACC
* * * *
23303790 AGCAGCAGGATCGACAGCACGTAGGGGGGTATCGGTCCGATCCCCATCTTGTGCATTCTGCCTCT
129 AGCAGCAGGATCGACAGCACGCAGGGGGG-ACCGGGCCGATCCCCGTCTTGTGCATTCTGCCTCT
*
23303855 CCGGCC-AGCTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
193 CCGGCCGA-CTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
* ** * *
23303919 TGTCTAAGCCCTAGCTGAACCAAGGGTTGTGGC-AGCGAGATCGGCAGCACGCAGAGGGGGACCG
257 TGTCTAAGCCCCAGCCAAACCAAGGGTTGT-GCTAGCGAGACCGGCAGCACGCAGAAGGGGACCG
* * * * *
23303983 GGCCGATCCCCGGCTTG-GCATTATGCCTTTTCTG-CCAGCTCAACGCCCGTACGCTCGTTTCGT
321 GGCCGATCCCCGGCTTGCGCATTATGCC-TCTCCGACCAGCTCAACACCCGCACGCTCGTTTCAT
* * * * *
23304046 GGGTTGACTTATGCATACGGAGTTCATTCCTAGTCTAAGATCGAA-TCAGA-TCGAGGGTTGCGA
385 GGGTTGACTTAGGCATACAGAGTTCACTCCCAGTCTAAGATCGAACT-AGACT-GAAGGTTGCGA
23304109 TAGCA-GATCGACAGCACGCAGGGGGGACCGGGTCGGTCCCCGACTTGCAC-TTTCTGCCTCT-C
448 TAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGGTCCCCGACTTGCACATTT-TGCCTCTCC
**
23304171 TG
512 AA
* * * * * * *
23304173 GCTGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGAAGTTTATTCCTTGTC
1 TC-GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTC
*
23304238 TAAGCATACAGAGTTCATTCCCACTCTAAGATCGAACCAGACCGAGGCTTGCGACAGCAGGACCA
65 TAAGCATACAGAGTTCATTCCCACTCTAAGATCGAACCAGACCAAGGCTTGCGACAGCAGGACCA
* * * *
23304303 GCAGCAAGATC-AGTAGCACACAGGGGGGGACCGGGCCGATCCCTGTCTTGTGCATTCTGCCTCT
130 GCAGCAGGATCGA-CAGCACGCA-GGGGGGACCGGGCCGATCCCCGTCTTGTGCATTCTGCCTCT
*
23304367 CCGGCCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGCAGTTCATTCCAT
193 CCGGCCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
23304432 GTCTAAGC
258 GTCTAAGC
23304440 ATATGGAGTT
Statistics
Matches: 663, Mismatches: 87, Indels: 44
0.84 0.11 0.06
Matches are distributed among these distances:
499 3 0.00
500 98 0.15
505 1 0.00
506 1 0.00
508 1 0.00
511 7 0.01
512 297 0.45
513 107 0.16
514 146 0.22
515 2 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (513 bp):
TCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
AAGCATACAGAGTTCATTCCCACTCTAAGATCGAACCAGACCAAGGCTTGCGACAGCAGGACCAG
CAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGTCTTGTGCATTCTGCCTCTCCG
GCCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
TAAGCCCCAGCCAAACCAAGGGTTGTGCTAGCGAGACCGGCAGCACGCAGAAGGGGACCGGGCCG
ATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTCAACACCCGCACGCTCGTTTCATGGGTTG
ACTTAGGCATACAGAGTTCACTCCCAGTCTAAGATCGAACTAGACTGAAGGTTGCGATAGCAGGA
TCGACAGCACGCAGGGGGGACCGGGTCGGTCCCCGACTTGCACATTTTGCCTCTCCAA
Found at i:23304442 original size:26 final size:26
Alignment explanation
Indices: 23304412--23304464 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
23304402 GTTGGCTTAG
23304412 GCATA-GGCAGTTCATT-CCATGTCTAA
1 GCATATGG-AGTTCATTCCCA-GTCTAA
23304438 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
23304464 G
1 G
23304465 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:23305172 original size:26 final size:26
Alignment explanation
Indices: 23305143--23305195 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23305133 GCTGACTTAG
23305143 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
23305169 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
23305195 G
1 G
23305196 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:23305573 original size:157 final size:155
Alignment explanation
Indices: 23305177--23305634 Score: 453
Period size: 157 Copynumber: 2.9 Consensus size: 155
23305167 AAGCATACGT
* * *
23305177 AGTTCATTCCCAGTCTAAGATC-GAACCGAACCGAGGGTTGCGACAGCAGGATCGACAGCACGCA
1 AGTTCATT-CCAGTCTAAGATCAG-ACCGGACCAAGGGTTGCGACAGGAGGATCGACAGCACGCA
* * * *
23305241 GGGGGGATCGGGCCGATCCCAGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGTACGC
64 GGGGGGATCTGGCCGATCCC-GACTTGCGCATTCTGCCTCTC-GGCCGGCTGAGCGCCTGCACGC
* * * *
23305306 CCGTTTCGTAGGTTGGCTTAGGCATAAGG
127 TCGTTTCGTGGGTTGACTTAGGCATAAGA
* ** * * * *
23305335 AGTTCATTCCATGTC-AAGCA-CTAG-CCGGATCAAGGGTTATGGCAGTG-GGACCTACAGCATG
1 AGTTCATTCCA-GTCTAAG-ATC-AGACCGGACCAAGGGTTGCGACAG-GAGGATCGACAGCACG
* * * * * * *
23305396 TAGAGGGGGA-CTGAACCGATCCTCGACTTACGCATTATGCCTCTCGGTCGGCTTAGTGCCTGCA
62 CAG-GGGGGATCTG-GCCGATCC-CGACTTGCGCATTCTGCCTCTCGGCCGGCTGAGCGCCTGCA
23305460 CGCTCGTTTCGTGGGTTGACTTAGGCATACA-A
124 CGCTCGTTTCGTGGGTTGACTTAGGCATA-AGA
*
23305492 AGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGGAAGATCGACAGCACGCAG
1 AGTTCATTCC-AGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGGAGGATCGACAGCACGCAG
* * * * *
23305557 GGGGGATCTGGTCGATCCCCAGCTTGTGCATTCTGCCTCTTCGCCCGGCTGAGCACCTGCACGCT
65 GGGGGATCTGGCCGATCCCGA-CTTGCGCATTCTGCCTC-TCGGCCGGCTGAGCGCCTGCACGCT
23305622 CGTTTCGTGGGTT
128 CGTTTCGTGGGTT
23305635 AGCTTAAACA
Statistics
Matches: 238, Mismatches: 45, Indels: 34
0.75 0.14 0.11
Matches are distributed among these distances:
156 2 0.01
157 120 0.50
158 114 0.48
159 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (155 bp):
AGTTCATTCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGGAGGATCGACAGCACGCAGG
GGGGATCTGGCCGATCCCGACTTGCGCATTCTGCCTCTCGGCCGGCTGAGCGCCTGCACGCTCGT
TTCGTGGGTTGACTTAGGCATAAGA
Found at i:23305647 original size:158 final size:155
Alignment explanation
Indices: 23305169--23305668 Score: 462
Period size: 158 Copynumber: 3.2 Consensus size: 155
23305159 CCCAATCTAA
* * *
23305169 GCATAC-GTAGTTCATTCCCAGTCTAAGATC-GAACCGAACCGAGGGTTGCGACAGCAGGATCGA
1 GCATACAG-AGTTCATT-CCAGTCTAAGATCAG-ACCGGACCAAGGGTTGCGACAGGAGGATCGA
*
23305232 CAGCACGCAGGGGGGATCGGGCCGAT-CCCAGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGC
63 CAGCACGCAGGGGGGATCTGGCCGATCCCCA-GCTTGCGCATTCTGCCTCTC-GGCCGGCTGAGC
* * * *
23305296 GCCCGTACGCCCGTTTCGTAGGTTGGCTTAG
126 GCCTGCACGCTCGTTTCGTGGGTT-GCTTAG
* ** * *
23305327 GCATA-AGGAGTTCATTCCATGTC-AAGCA-CTAG-CCGGATCAAGGGTTATGGCAGTG-GGACC
1 GCATACA-GAGTTCATTCCA-GTCTAAG-ATC-AGACCGGACCAAGGGTTGCGACAG-GAGGATC
* * * * * * * * *
23305387 TACAGCATGTAGAGGGGGA-CTGAACCGATCCTC-GACTTACGCATTATGCCTCTCGGTCGGCTT
61 GACAGCACGCAG-GGGGGATCTG-GCCGATCCCCAG-CTTGCGCATTCTGCCTCTCGGCCGGCTG
*
23305450 AGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
123 AGCGCCTGCACGCTCGTTTCGTGGGTTG-CTTAG
* *
23305484 GCATACAAAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGGAAGATCGACA
1 GCATACAGAGTTCATTCC-AGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGGAGGATCGACA
* * * *
23305549 GCACGCAGGGGGGATCTGGTCGATCCCCAGCTTGTGCATTCTGCCTCTTCGCCCGGCTGAGCACC
65 GCACGCAGGGGGGATCTGGCCGATCCCCAGCTTGCGCATTCTGCCTC-TCGGCCGGCTGAGCGCC
*
23305614 TGCACGCTCGTTTCGTGGGTTAGCTTAA
129 TGCACGCTCGTTTCGTGGGTT-GCTTAG
* * *
23305642 ACATACGGAGTTCATTCAATGTCTAAG
1 GCATACAGAGTTCATTCCA-GTCTAAG
23305669 CATACGGAGT
Statistics
Matches: 270, Mismatches: 49, Indels: 46
0.74 0.13 0.13
Matches are distributed among these distances:
156 1 0.00
157 122 0.45
158 142 0.53
159 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (155 bp):
GCATACAGAGTTCATTCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGGAGGATCGACAG
CACGCAGGGGGGATCTGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCGGCCGGCTGAGCGCCTG
CACGCTCGTTTCGTGGGTTGCTTAG
Found at i:23307079 original size:26 final size:26
Alignment explanation
Indices: 23307049--23307101 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23307039 GTTGACTTAG
23307049 GCATACGAAGTTCA-TCTCCAGTCTAA
1 GCATACGAAGTTCATTC-CCAGTCTAA
*
23307075 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
23307101 G
1 G
23307102 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:23307364 original size:159 final size:159
Alignment explanation
Indices: 23307075--23307577 Score: 548
Period size: 159 Copynumber: 3.2 Consensus size: 159
23307065 TCCAGTCTAA
* * * * *
23307075 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCAGACCGAGGGTTGTGACAGTAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACCAAACCGAGGGTTATGACAGCAAGATCGAC
* * * *
23307139 AGCACGCAG-GGGGGATCGGGTCGATCCCTGGCTTGCGTATTCTACCTCTCTGGTCGACTGAGCG
65 AGCACGCAGAGGGGGACCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCTGGTCGACTGAGCG
*
23307203 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * *
23307233 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGAAGGTTATGGCAGCAAGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAAACCAAACCGAGGGTTATGACAGCAAGATCGACA
* * * *
23307298 GCACGTAGAGGGGGACCGGG-CTGATCCCTGACTTGCGCATTATGCCTCTCCGGTCGACTCAGCG
66 GCACGCAGAGGGGGACCGGGTC-GATCCCTGACTTGCGCATTCTGCCTCTCTGGTCGACTGAGCG
*
23307362 CCCGCACGCTCGTTTCATGGGTTGACTTAG
130 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * *
23307392 GCAGACGAAGTTAATTCC-TAGTCTAAGATCAAATCGAACTGAGGGTTATGACAGCAAGTTCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAAACCAAACCGAGGGTTATGACAGCAAGATCGAC
* * * * * ** **
23307456 AGCATGCAGAGGGGGACAGAGTCGAT-CCTCGACTTGCACATTCTGCCTTTCTGACCGGTTGAGC
65 AGCACGCAGAGGGGGACCGGGTCGATCCCT-GACTTGCGCATTCTGCCTCTCTGGTCGACTGAGC
* *
23307520 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
** *
23307551 GCATACCTAGTTCATTCCATGTTTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
23307578 CATACAGAGT
Statistics
Matches: 281, Mismatches: 57, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
157 3 0.01
158 61 0.22
159 215 0.77
160 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACCAAACCGAGGGTTATGACAGCAAGATCGACA
GCACGCAGAGGGGGACCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCTGGTCGACTGAGCGC
CCGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:23307952 original size:514 final size:501
Alignment explanation
Indices: 23306976--23308115 Score: 1233
Period size: 513 Copynumber: 2.2 Consensus size: 501
23306966 ACCACCCGTT
* * * * * * *
23306976 TGATCCTCGGCTTGCGCATCCTGCCTTTCT-AGTCGGTTGAGCGCTCGTATGCTCGTTTCATGGG
1 TGATCCTCGGCTTGCACATTCTGCCTTTCTGA-CCGGTTGAGCACCCGCACGCTCGTTTCATGGG
* * * *
23307040 TTGACTTAGGCATACGAAGTTCATCTCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
65 TTGGCTTAGGCATACAAAGTTCAT-TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAACAT
* ** *
23307104 CAAACCAGACCGAGGGTTGTGACAGTAGGATCGGCAGCACGCAGGGGGGATCGGGTCGATCCCTG
129 CAAACCAGACCGAGGGTTGTGACAGTAGGATCGGCAGCACGCAGGGGGGATCAGACCGATCCCCG
** * * * * *
23307169 GCTTGCGTATTCTACCTCTCTGGTCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGG
194 GCTTGCACATTCTACCTCTCCGGCCAACTGAGCGCCCACACGCCCATTTCATGGGTTGGCTTAGG
* *
23307234 CATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGAAGGTTATGGCAGCAAGACCGACAG
259 CATACGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGAAAGTTATGGCAGCAAGACCGACAG
** * *
23307299 CACGTAGAGGGGGACCGGGCTGATCCCTGACTTGCGCATTATGCCTCTCCGGTCGACTCAGCGCC
324 CACACAGAGGGGGACCGGGCTGATCCCTGACTTGCGCATTATGCCTCTCCGGCCGACTCAACGCC
* * *
23307364 CGCACGCTCGTTTCATGGGTTGACTTAGGCAGACGAAGTTAATTCCTAGTCTAAGATCAAATCGA
389 CGCACGCTCGTTTCATGGGTTGACTTAGGCAGACGAAGTTAACTCCCAGTCTAAGATCAAACCGA
* ** * * *
23307429 ACTGAGGGTTATGACAGCAAGTTCGACAGCATGCAGAGGGGGA-CAGAG-
454 ACCGAGGGTTACAACAGCAAGATCGACAGCACGCAG-GGGGGATC-GGGC
* *
23307477 TCGATCCTCGACTTGCACATTCTGCCTTTCTGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGG
1 T-GATCCTCGGCTTGCACATTCTGCCTTTCTGACCGGTTGAGCACCCGCACGCTCGTTTCATGGG
** *
23307542 TTGGCTTAGGCATACCTAGTTCATTCCATGTTTAAGCATACAGAGTTCATTCCCAGTCTAACAT-
65 TTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAACATC
* * * * *
23307606 AAGATCGGATCGAGGGTTGCTTGAGCAAGACTTGCAGCAGGATCGGTAGCACGTAGGGGGGATCA
130 AA-ACCAGACCGAGGGTTG--TGA-C-AG---T-----AGGATCGGCAGCACGCAGGGGGGATCA
* ** *
23307671 GACCGATCCCCGGCTTGCACATTCTGCCTCTCCGGCCAACTGATTGCCCACACGCTCATTT-ATG
182 GACCGATCCCCGGCTTGCACATTCTACCTCTCCGGCCAACTGAGCGCCCACACGCCCATTTCATG
* * ** *
23307735 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTGAGCCCCAGCCGGACTGAAAG-TAGTGGCA
247 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGAAAGTTA-TGGCA
* * * *
23307799 G-AGGGACCGGCAGCACACAGAGGGGGATCGGG-TCGATCCCTCGGCTTGCGCATTATGCCTCTC
311 GCA-AGACCGACAGCACACAGAGGGGGACCGGGCT-GATCCCT-GACTTGCGCATTATGCCTCTC
** * * * *
23307862 CGGCCGGTTCAACGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC-AGAGTTCACTCCCA
373 CGGCCGACTCAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAGACGA-AGTTAACTCCCA
*** * * * *
23307926 GTCTAAGATTGGACC-AGACCGAGGGTTGCAATAGCAAGATCGACAGTACGTAGGGGGGATCGGG
437 GTCTAAGATCAAACCGA-ACCGAGGGTTACAACAGCAAGATCGACAGCACGCAGGGGGGATCGGG
23307990 C
501 C
* * * * ** *
23307991 TGATCC-CTGGCTTGTACATTCTGCCTGTCCGACCGGTTGAGCACCTGCACGCTTATTTTATGGG
1 TGATCCTC-GGCTTGCACATTCTGCCTTTCTGACCGGTTGAGCACCCGCACGCTCGTTTCATGGG
* *
23308055 TTGGCTTAGCCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
65 TTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
23308116 GATTTTGAGC
Statistics
Matches: 529, Mismatches: 85, Indels: 38
0.81 0.13 0.06
Matches are distributed among these distances:
501 7 0.01
502 118 0.22
503 1 0.00
504 3 0.01
505 1 0.00
506 2 0.00
509 1 0.00
512 5 0.01
513 208 0.39
514 183 0.35
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.25
Consensus pattern (501 bp):
TGATCCTCGGCTTGCACATTCTGCCTTTCTGACCGGTTGAGCACCCGCACGCTCGTTTCATGGGT
TGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAACATCA
AACCAGACCGAGGGTTGTGACAGTAGGATCGGCAGCACGCAGGGGGGATCAGACCGATCCCCGGC
TTGCACATTCTACCTCTCCGGCCAACTGAGCGCCCACACGCCCATTTCATGGGTTGGCTTAGGCA
TACGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGAAAGTTATGGCAGCAAGACCGACAGCA
CACAGAGGGGGACCGGGCTGATCCCTGACTTGCGCATTATGCCTCTCCGGCCGACTCAACGCCCG
CACGCTCGTTTCATGGGTTGACTTAGGCAGACGAAGTTAACTCCCAGTCTAAGATCAAACCGAAC
CGAGGGTTACAACAGCAAGATCGACAGCACGCAGGGGGGATCGGGC
Found at i:23308101 original size:26 final size:26
Alignment explanation
Indices: 23308065--23308116 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23308055 TTGGCTTAGC
23308065 CATACAGAGTTCATT-CCATGTCTAAG
1 CATACAGAGTTCATTCCCA-GTCTAAG
23308091 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
23308117 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:23310357 original size:26 final size:26
Alignment explanation
Indices: 23310321--23310372 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
23310311 GTTGACTTAG
23310321 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23310347 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23310373 TATCAAACTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23311413 original size:26 final size:26
Alignment explanation
Indices: 23311383--23311438 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
23311373 TGGGTTGATT
*
23311383 TAAGCATAAGGAGTTCATCCCCAGTC
1 TAAGCAGAAGGAGTTCATCCCCAGTC
* * *
23311409 TAAGCAGATGGAGTTCATTCCTAGTC
1 TAAGCAGAAGGAGTTCATCCCCAGTC
23311435 TAAG
1 TAAG
23311439 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
TAAGCAGAAGGAGTTCATCCCCAGTC
Found at i:23311862 original size:156 final size:158
Alignment explanation
Indices: 23311543--23311895 Score: 371
Period size: 156 Copynumber: 2.2 Consensus size: 158
23311533 CCGTTTTGTG
* * * * ** * * * *
23311543 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTGAGCCCCAG-TCGGATCGAGGGTTGTGGCA
1 GGTTGACTTAGGCATACGGAGTTCATTCCACGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTA
** * *
23311607 GCGGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGACTTACGCATTATGCTTCTCTGA
65 GTAGGATCGACAGCACACAGAGGGGGATCGGGCCGATCCCCGACTTACGCATTATGC-TCTCCGA
* * * *
23311672 CCGACTCAACGCCCGTACGCTTGTTTTCGT
129 CCGACTCAACGCCCATACACTCGTTTTCAT
*
23311702 GGTTGACTTAGGCGTACGGAGTTCATTCC-CGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCACGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAG
*
23311766 TAGGATCGACAGCACATAG-GGGGGAT-GGGCCGATCCCC-AGCTTACGCATTTTATG-TCTCCG
66 TAGGATCGACAGCACACAGAGGGGGATCGGGCCGATCCCCGA-CTTACGCA--TTATGCTCTCCG
* *
23311827 ACTGGCT-AAGCGCCCATACACTCG-TTTCAT
128 ACCGACTCAA-CGCCCATACACTCGTTTTCAT
* *
23311857 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 -GGTTGACTTAGGCATACGGAGTTCATTCCACGTCTAAG
23311896 CATATGGAGT
Statistics
Matches: 162, Mismatches: 25, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
155 8 0.05
156 68 0.42
157 17 0.10
158 43 0.27
159 26 0.16
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCACGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAG
TAGGATCGACAGCACACAGAGGGGGATCGGGCCGATCCCCGACTTACGCATTATGCTCTCCGACC
GACTCAACGCCCATACACTCGTTTTCAT
Found at i:23311899 original size:26 final size:25
Alignment explanation
Indices: 23311869--23311920 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
23311859 GTTGGCTTAG
23311869 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
*
23311895 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
23311920 G
1 G
23311921 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:23312270 original size:159 final size:158
Alignment explanation
Indices: 23312045--23312409 Score: 396
Period size: 158 Copynumber: 2.3 Consensus size: 158
23312035 CTGTATGCCT
** * *
23312045 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGT
1 GTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGTCGGACCGACGGT
* * * * * *
23312110 TGTGGCAGCGGGA-CTGATAGCATGCAGAGGGGGACC-AGACGGATCCCCGGCTTGCGGATTATG
66 TGCGGCAGCAGGATC-GACAGCATGCAG-GGGGGACCGAGACGG-TCCCCGGCTTACGCATTATA
* * *
23312173 CCTCTCCGACTAGTTCAGTGCCCGAACGCTC
128 CCTCTCCGACCAGCTCAATGCCCGAACGCTC
* * *
23312204 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGTCG
1 GTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCACCAG-TCGGACCGACG
* * ** * * *
23312267 GTTGCGGTAGCAGGATCGACAGCATGCAGGGGGGACCGGGTTGGTCCCTGGCTTATGCATTCTAC
64 GTTGCGGCAGCAGGATCGACAGCATGCAGGGGGGACCGAGACGGTCCCCGGCTTACGCATTATAC
* * * * *
23312332 CTTTCTGACCGGCTGAATGCCCGTACGCTC
129 CTCTCCGACCAGCTCAATGCCCGAACGCTC
*
23312362 GTTTCGTGGGTTGGCTTACGCATACAGAGTTCATTCCATGTCTAAGCA
1 GTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
23312410 TATGGAGTTC
Statistics
Matches: 170, Mismatches: 30, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
157 3 0.02
158 88 0.52
159 75 0.44
160 4 0.02
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (158 bp):
GTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGTCGGACCGACGGT
TGCGGCAGCAGGATCGACAGCATGCAGGGGGGACCGAGACGGTCCCCGGCTTACGCATTATACCT
CTCCGACCAGCTCAATGCCCGAACGCTC
Found at i:23313034 original size:26 final size:25
Alignment explanation
Indices: 23312998--23313049 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
23312988 ACGCAGGGGG
* *
23312998 GCATATGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCAT-CCCAGTCTAA
*
23313024 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
23313049 G
1 G
23313050 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:23313327 original size:418 final size:420
Alignment explanation
Indices: 23312584--23313356 Score: 979
Period size: 418 Copynumber: 1.8 Consensus size: 420
23312574 TTAGGCATGC
* *
23312584 GGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGG
1 GGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGG
* * ** * *
23312649 TTGCGACAGCAAAATCGATAGCATGCAGGCGGGACCGAGCCGATCCCTACCTTGCGCATTCTACC
66 TTGCGACAGCAAAATCGACAACACACAGGCGGGACCGAGCCGATCCCGACCTTACGCATTCTACC
* * * * *
23312714 TCTCCGGTAGGCTGTGTGCCCGTATGCCCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTC
131 TCTCCGGTACGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTC
* * * *
23312779 CATGTCTAAGCCCCAACCGGAGCGAGGGTTATGGCAGCGGGACCGATAGCACACAGAGGGGGATC
196 CATGTATAAGCCCCAACCGGAGCGAGGGTTACGGCAGCAGGACCGACAGCACACAGAGGGGGATC
** * * *
23312844 GGGTGGATCCCCTGCTTGTGCATTATGCCTCTCCGTCCAGCTCAGCGCCCGAACGCTCATTTCGT
261 GGGCCGATCCCCAGCTTGCGCATTATACCTCTCCGTCCAGCTCAGCGCCCGAACGCTCATTTCGT
*
23312909 GTGTTGACTTAGGCATACAAAATTCATTCCCAATCTAAGATCGGATCGGACTGAGGGTTGCGGCA
326 GGGTTGACTTAGGCATACAAAATTCATTCCCAATCTAAGATCGGATCGGACTGAGGGTTGCGGCA
23312974 GTAGGATCGACAGCACGCAGGGGGGCATAT
391 GTAGGATCGACAGCACGCAGGGGGGCATAT
* * * *
23313004 GGAGTTTATCCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATC-GAACCAGACCGATG
1 GGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAG-ACCAGACCGAGG
* * ** * * * * *
23313067 GTTGCGATAGTAGGATCGGCAACACACAGGGGGGACCGGGCCGATCCCCGA-CTTATGCATTCTG
65 GTTGCGACAGCAAAATCGACAACACACAGGCGGGACCGAGCCGAT-CCCGACCTTACGCATTCTA
* *
23313131 CCTCTCCGGT-CGTTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
129 CCTCTCCGGTACGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCAT
* * **
23313195 TCCATGTATAAGCCCCAGCCGGA-CTGA-GGTTAGCGGCAGCAGGATCGACAGCACGTAGAGGGG
194 TCCATGTATAAGCCCCAACCGGAGC-GAGGGTTA-CGGCAGCAGGACCGACAGCACACAGAGGGG
* * *
23313258 GATCGGGCCGATCCCCAGCTTGCGCATTCA-ACCTCTCCG-CTC-GTCTGAGCGCCCGCACGCTT
257 GATCGGGCCGATCCCCAGCTTGCGCATT-ATACCTCTCCGTC-CAG-CTCAGCGCCCGAACGCTC
* * * *
23313320 GTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCC
319 ATTTCGTGGGTTGACTTAGGCATACAAAATTCATTCC
23313357 ATGTCTAAGC
Statistics
Matches: 297, Mismatches: 49, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
417 8 0.03
418 175 0.59
419 76 0.26
420 38 0.13
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (420 bp):
GGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGG
TTGCGACAGCAAAATCGACAACACACAGGCGGGACCGAGCCGATCCCGACCTTACGCATTCTACC
TCTCCGGTACGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTC
CATGTATAAGCCCCAACCGGAGCGAGGGTTACGGCAGCAGGACCGACAGCACACAGAGGGGGATC
GGGCCGATCCCCAGCTTGCGCATTATACCTCTCCGTCCAGCTCAGCGCCCGAACGCTCATTTCGT
GGGTTGACTTAGGCATACAAAATTCATTCCCAATCTAAGATCGGATCGGACTGAGGGTTGCGGCA
GTAGGATCGACAGCACGCAGGGGGGCATAT
Found at i:23314100 original size:26 final size:26
Alignment explanation
Indices: 23314048--23314100 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23314038 GTTGACTTAG
*
23314048 GCATACGGAGTTCATCCCTAGTTTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
23314074 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCA-TCCCTAGTCTAA
23314100 G
1 G
23314101 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:23314596 original size:26 final size:26
Alignment explanation
Indices: 23314547--23314599 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23314537 GGTTGCTTAG
*
23314547 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
23314573 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
23314599 G
1 G
23314600 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:23314944 original size:26 final size:26
Alignment explanation
Indices: 23314915--23314967 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23314905 GTTGACTTAG
23314915 GCATACGGAGCTCATCCCTAGTCTAA
1 GCATACGGAGCTCATCCCTAGTCTAA
* * * *
23314941 GCATATGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGCTCATCCCTAGTCTAA
23314967 G
1 G
23314968 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCTAGTCTAA
Found at i:23315135 original size:26 final size:26
Alignment explanation
Indices: 23315098--23315150 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23315088 GTTGACTTAG
23315098 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
23315124 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
23315150 G
1 G
23315151 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:23315151 original size:183 final size:184
Alignment explanation
Indices: 23314880--23315286 Score: 473
Period size: 183 Copynumber: 2.2 Consensus size: 184
23314870 TCGGCTGGCC
* * * * * * *
23314880 GAGCACCCGTACGCTCGTTTCATGTGTTGACTTAGGCATACGGAGCTCATCCCTAGTCTAAGCAT
1 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGCTCATCCCCAATCTAAGCAT
* * * * * * *
23314945 ATGGAGTTTATTCCTAGTCTAAGATC-AGACCAGATCGAGGGTTGCAGTACCAGGATCGGTAGCA
66 ACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGATCGAGGGTTACAGCACCAGGATCAGCAGCA
* *
23315009 CAC-GGAGGGGA-TCGGCCGAT-CCTCGGGTTGCACATTCTGCCTCTCC-AGCCGGTT
130 CACAGG-GGGGACTCGGCCGATCCCT-GGCTTGCACATTCTGCCTCTCCGA-CCGGCT
* * * *
23315063 GAGTGCCCGCTCGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCAT
1 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGCTCATCCCCAATCTAAGCAT
* * * *
23315128 ACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCTAGGGTTACGGCAGCAGGATCAGCAGCAC
66 ACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTACAGCACCAGGATCAGCAGCAC
* * * *
23315193 GCAGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCTGCT
131 ACAGGGGGGACTCGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGACCGGCT
* *
23315247 GAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
1 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
23315287 AGGAATTGAT
Statistics
Matches: 186, Mismatches: 33, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
183 112 0.60
184 70 0.38
185 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (184 bp):
GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGCTCATCCCCAATCTAAGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTACAGCACCAGGATCAGCAGCAC
ACAGGGGGGACTCGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGACCGGCT
Found at i:23315457 original size:158 final size:157
Alignment explanation
Indices: 23315173--23315466 Score: 382
Period size: 158 Copynumber: 1.9 Consensus size: 157
23315163 CTAGGGTTAC
* *** *
23315173 GGCAGCAGGATCAGCAGCACGCAGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTC
1 GGCAGCAGGACCAGCAGCACGCAGGGGGGACTGGGCCGATCCCCAACTTGCGCATTCTACCTCTC
* * * *
23315238 CGACCTGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAATTGATT-CCAT
66 CGACCTGCTGAGCACCCGCACGCCCGATTCATGGGTTGGCTTAGGCATAAGGAATTCATTCCCA-
23315302 GTCTAAGCCCTAGTCAGACCTAGGTTGT
130 GTCTAAGCCCTAGTCAGACCTAGGTTGT
*
23315330 GGCAGCAGGACC-GACAGCACGCAGTGGGGGA-TCGGGTCGATCCCCAACTTGCGCATTCTACCT
1 GGCAGCAGGACCAG-CAGCACGCAG-GGGGGACT-GGGCCGATCCCCAACTTGCGCATTCTACCT
* * *
23315393 CTCCGATC-GACTGAGCACCCGCACGCTCGATTCATGGGTTGGCTTAGGCATATA-GAGTTCATT
63 CTCCGACCTG-CTGAGCACCCGCACGCCCGATTCATGGGTTGGCTTAGGCATA-AGGAATTCATT
23315456 CCCAGTCTAAG
126 CCCAGTCTAAG
23315467 AGTTTGAGCC
Statistics
Matches: 118, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
156 1 0.01
157 23 0.19
158 90 0.76
159 4 0.03
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.22
Consensus pattern (157 bp):
GGCAGCAGGACCAGCAGCACGCAGGGGGGACTGGGCCGATCCCCAACTTGCGCATTCTACCTCTC
CGACCTGCTGAGCACCCGCACGCCCGATTCATGGGTTGGCTTAGGCATAAGGAATTCATTCCCAG
TCTAAGCCCTAGTCAGACCTAGGTTGT
Found at i:23315571 original size:26 final size:26
Alignment explanation
Indices: 23315541--23315593 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23315531 GTTGGCATAG
23315541 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * * *
23315567 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
23315593 G
1 G
23315594 ATCAAACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:23317928 original size:26 final size:26
Alignment explanation
Indices: 23317899--23317951 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23317889 CCGGTCTGAT
23317899 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
23317925 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
23317951 C
1 C
23317952 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:23318373 original size:157 final size:156
Alignment explanation
Indices: 23318108--23318607 Score: 488
Period size: 157 Copynumber: 3.2 Consensus size: 156
23318098 CCGGCTGGGG
* *
23318108 CTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTACGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
* * * * * *
23318173 CGGCCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCTGATCCCCCTGCGTACTATCGATCCTA
66 C-GACAGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGATCCCCCTGCGTGCTATCGATCCTA
23318238 CTACTGCAACCCTCGGTCTGGTCTGAT
130 CTACTGCAACCCTCGGTCTGGTCTGAT
* * * * * *
23318265 CTTAGAC-TGGGAAGGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGGGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * *
23318329 CCAGTCAGAGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTTTGCATGCTACCGGTC
65 TC-GACAGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGATCCCCC--TGCGTGCTATCGATC
** ** * * **
23318394 CCGCTACCACAACCCTCAGTCCGG-CTGGGG
127 CTACTACTGCAACCCTCGGTCTGGTCT-GAT
* * * * * * *
23318424 CTTAGACATGGAATGACCTCCCTATGCCTAAGCCAACCTAGGAAACGGGGGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
* * * * *
23318489 CGACTAGAGAGACAAAATGCGCAAGCCAGGGATCGGTCCGATCCCCCTACGTGCTATCGATCCTA
66 CGAC-AGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGATCCCCCTGCGTGCTATCGATCCTA
* *
23318554 CT-GTCGCAACCCTCGGT-TCGATCTGAT
130 CTACT-GCAACCCTCGGTCT-GGTCTGAT
*
23318581 CTTAGAC-TAGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
23318608 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 63, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
156 2 0.01
157 143 0.53
158 6 0.02
159 118 0.44
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
CGACAGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGATCCCCCTGCGTGCTATCGATCCTAC
TACTGCAACCCTCGGTCTGGTCTGAT
Found at i:23318498 original size:159 final size:158
Alignment explanation
Indices: 23318068--23318536 Score: 505
Period size: 157 Copynumber: 3.0 Consensus size: 158
23318058 TGTCGATCCC
*
23318068 ACTACCGGTCCTGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
1 ACTACCGGTCCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
* * * ** * *
23318133 GCCTAAACCAACCCACGAAACGAGCGTACGGGCACTCAGTCGGCCGGAGAGGTAGAATGCACAAG
66 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGACTAGAGAGGCAAAATGCACAAG
* *
23318198 CCGGGGATCGGCCTGATCCCCC-TGCGT
131 CCGGGGATCGGCCCGATCCCCCTTGCAT
* * * ** * * ** *
23318225 ACTATCGATCCTACTACTGCAACCCTCGGTCTGGTCT-GATCTTAGAC-TGGGAAGGAACTCCGT
1 ACTACCGGTCCTGCTACCACAACCCTCAGTCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCGT
* * * * * * * *
23318288 ATGCCTAAGCCAACCCATGAAACAAGCATGGGGGCACTGAG-CCAGTCAGAGAGGCATAATGCAC
64 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGACT-AGAGAGGCAAAATGCAC
23318352 AAGCCGGGGATCGGCCCGATCCCCCTTTGCAT
128 AAGCCGGGGATCGGCCCGATCCCCC-TTGCAT
* * * *
23318384 GCTACCGGTCCCGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGACCTCCCTAT
1 ACTACCGGTCCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
* * * * * * *
23318449 GCCTAAGCCAACCTAGGAAACGGGGGTGCGGGCGCTCAGTCGACTAGAGAGACAAAATGCGCAAG
66 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGACTAGAGAGGCAAAATGCACAAG
* *
23318514 CCAGGGATCGGTCCGATCCCCCT
131 CCGGGGATCGGCCCGATCCCCCT
23318537 ACGTGCTATC
Statistics
Matches: 247, Mismatches: 57, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
156 2 0.01
157 119 0.48
158 5 0.02
159 117 0.47
160 4 0.02
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (158 bp):
ACTACCGGTCCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGACTAGAGAGGCAAAATGCACAAG
CCGGGGATCGGCCCGATCCCCCTTGCAT
Found at i:23318610 original size:26 final size:26
Alignment explanation
Indices: 23318581--23318633 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23318571 TCGATCTGAT
*
23318581 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATAAACTCTGTATG
* * *
23318607 CTTAGACTGGGGATAAACTTTGTATG
1 CTTAGACTAGGAATAAACTCTGTATG
23318633 C
1 C
23318634 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCTGTATG
Found at i:23319602 original size:159 final size:159
Alignment explanation
Indices: 23319299--23319794 Score: 376
Period size: 159 Copynumber: 3.1 Consensus size: 159
23319289 GGGGCTCAAA
* * * * *
23319299 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
1 ATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCAACGAAACAAGCATGCAGGCGCTCA
** * * * *
23319364 GTCGACCAGAGAGGTAGAATGCGCAAGCCGAGGATCAACTCGGTCCCCCTCTACGTGCTGTCGAT
66 CCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCAACCCAGTCCCCCTCTACATGCTGTCGAT
* **
23319429 CCTGCTACTGCAACCCTCGGTCCGGTCCG
131 CCCGCTACCACAACCCTCGGTCCGGTCCG
* * * *
23319458 ATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCAATGAAACAAGCGTGCAGGCGCTGA
1 ATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCAACGAAACAAGCATGCAGGCGCTCA
* * * * * *
23319523 CCCGACC-GAAGAGGCATAATGCGCAAGCTGGGGATCAGCCCAGTCCCCCTCTGCATGCTGTCGG
66 CCCGACCAG-AGAGGCAGAATGCGCAAGCCGAGGATCAACCCAGTCCCCCTCTACATGCTGTCGA
* * * * *
23319587 TCCCGCTGCCACAACCCTCAGT-CTGACTGG
130 TCCCGCTACCACAACCCTCGGTCCGGTC-CG
** * * * * *
23319617 GGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCAA-GAAAC-AGACGTGCGGGAGC
1 ATCTTAGAC-TGGGAATGAACTCCATATGCATAAGCCAA-CCAACGAAACAAG-CATGCAGGCGC
* ** * * * * * * * * *
23319679 TTAGTCGGCCGGAGAGGCAGAATGCACAAGTCGGGGGTCGACCCTGT-CCCC-CTACGTGCTGTC
63 TCACCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCAACCCAGTCCCCCTCTACATGCTGTC
* ** ** * * * *
23319742 AATCCTACTGTCGCAACCCTCGATCTGGTTCG
128 GATCCCGCTACCACAACCCTCGGTCCGGTCCG
*
23319774 ATCTTAGACTAGGAATGAACT
1 ATCTTAGACTGGGAATGAACT
23319795 TCGTATGCTT
Statistics
Matches: 264, Mismatches: 65, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
156 1 0.00
157 44 0.17
158 11 0.04
159 202 0.77
160 6 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
ATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCAACGAAACAAGCATGCAGGCGCTCA
CCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCAACCCAGTCCCCCTCTACATGCTGTCGAT
CCCGCTACCACAACCCTCGGTCCGGTCCG
Found at i:23319805 original size:26 final size:26
Alignment explanation
Indices: 23319776--23319828 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23319766 CTGGTTCGAT
* *
23319776 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
* *
23319802 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
23319828 C
1 C
23319829 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATAGGAATGAACTCCGTATG
Found at i:23320487 original size:158 final size:159
Alignment explanation
Indices: 23319986--23320487 Score: 365
Period size: 159 Copynumber: 3.2 Consensus size: 159
23319976 CCGGTTGGGG
* * * * * ** ** *
23319986 CTTAGACATGGG-ATGAACTCCATATGCCTAAGCCTACGCACGAAATG-GCGTGCGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCAAGCACTCAG
* * *** ** * * * *
23320049 CCGACCGGAGAGGCAGAATGTATAAGCTGGGGATCGGCCCGGTCCGCTCC--TATGTGTTGTCGA
65 CAGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCC-C-CCTTTACGTGCTATCGA
* * * * *
23320112 TCCTGCTACCGCAACCGTCGATCTGGTCCAAT
128 TCCTACTGCCGCAACCCTCGGTCCGGTCCAAT
* * * * ** * *
23320144 CTTAGATTGTGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCAAGCACTCAGC
* * * * * * * *
23320209 TGACCGGAGAGGCATAATGTGCAAGCCAGGGATTGGCCCGGTCCCCCTTTGCGTGCTGTCGATCC
66 AGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTTTACGTGCTATCGATCC
* * * ****
23320274 CACTGCCACAACCCTCGGTCC-GACTGGGG
131 TACTGCCGCAACCCTCGGTCCGGTC-CAAT
*
23320303 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCATGCAAGCACTCA
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGA-GCATGCAAGCACTCA
* *** *
23320366 GCCAG-CCGAAGAGGTAGAATGCGCAAGTTGGGGATCGACCTGGTCCCCC-TTACGTGCTATCGA
64 G-CAGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTTTACGTGCTATCGA
*
23320429 TCCTACTGCCGTAACCCTCGGTCCGGTCCAAT
128 TCCTACTGCCGCAACCCTCGGTCCGGTCCAAT
*
23320461 CTTAGACTGGGAATGAACTTCATATGC
1 CTTAGACTGGGAATGAACTCCATATGC
23320488 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 65, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
157 6 0.02
158 95 0.35
159 165 0.61
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCAAGCACTCAGC
AGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTTTACGTGCTATCGATCC
TACTGCCGCAACCCTCGGTCCGGTCCAAT
Found at i:23320512 original size:26 final size:26
Alignment explanation
Indices: 23320461--23320513 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23320451 CCGGTCCAAT
*
23320461 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
23320487 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
23320513 C
1 C
23320514 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23322562 original size:159 final size:157
Alignment explanation
Indices: 23322261--23322763 Score: 494
Period size: 159 Copynumber: 3.2 Consensus size: 157
23322251 ACTCCGTATG
*
23322261 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
23322326 CAATCGAAGAGGCAGAATGTGCAAGCCAGGGATCGGCTCAGTTCCCCCCTATC-TGCCGTCAATC
64 CGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGC-CCGATCCCCCCT-GCGTGCTGTCAGTC
* * *
23322390 CTGCTGCTGCAACCCTCGATCCGGTCT-GAT
127 CTACTGCCGCAACCCTCGGTCCGGTCTCGAT
* * * *
23322420 CTTAGTCTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
23322485 CGGTCGAAGAGGCATAATGCGCAAACTGGGGATTGGCCCGGTCCACCTCTGCGTGCTGCCAGTCC
64 CGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCC-CCCCTGCGTGCTGTCAGTCC
* * * * **
23322550 CACTGCCACAACCCTCGGTCCAG-CTGGGG
128 TACTGCCGCAACCCTCGGTCCGGTCTCGAT
* * * *
23322579 CTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCATGAAATGGGCGTGCGGGCACTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGC-AACCCATGAAACGAGCGTGCGGGCGCTCAGC
* ** * *
23322644 CGACCGGGGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATC-GATCC
64 CGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAG-TCC
* *
23322708 TACTGTCGCAACCCTCGGTCCGGT-TCAAT
128 TACTGCCGCAACCCTCGGTCCGGTCTCGAT
*
23322737 CTTAGACTAGGAATGAACTCCATATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
23322764 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 59, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 69 0.25
159 204 0.74
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
ATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAGTCCTAC
TGCCGCAACCCTCGGTCCGGTCTCGAT
Found at i:23322778 original size:26 final size:26
Alignment explanation
Indices: 23322737--23322788 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23322727 CCGGTTCAAT
23322737 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
23322763 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
23322789 ACTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:23323962 original size:26 final size:26
Alignment explanation
Indices: 23323933--23323983 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
23323923 GGTCTGATCC
* *
23323933 TAGACT-GGGAATGATCTCTGTATGCT
1 TAGACTAGGG-ATGAACTCCGTATGCT
23323959 TAGACTAGGGATGAACTCCGTATGC
1 TAGACTAGGGATGAACTCCGTATGC
23323984 CTCAATCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTAGGGATGAACTCCGTATGCT
Found at i:23324664 original size:159 final size:158
Alignment explanation
Indices: 23324501--23324844 Score: 343
Period size: 159 Copynumber: 2.2 Consensus size: 158
23324491 CTAGTCCGAT
* * * ** *
23324501 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACACACGAAATGAGTGTACGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACACACGAAACGAGCATACGGGCGCTCAGC
* * * * * *
23324566 TGGTCGGAGAGGCAAAATGCGAAAGTC-GAGGGTCGGCCCGGTACCCCT-CTACGTGCTGTCGAT
66 TGATCGGAGAGGCAAAATGCGAAAGCCTG-GGATCGACCC-G-ACCCCTCCTACCTGCTGTCAAT
* *
23324629 CCCGCTACCACAACCCTCGGTCCGATTGGGG
128 CCCGCTACCACAACCCTCGGTCCGATTCGAG
* * * * * * * *
23324660 CTTAGACAT-GGAATGAACTCCCTACGCCTATGCCAACCCATGAAACGGGCATGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTTCATATGCCTAAGCCAACACACGAAACGAGCATACGGGCGCTCAG
* * * * * *
23324724 TTGATCGGAGAGGCAGAATGCGCAAGCCTGGGATCGACCCGATCCCTCCTGCCTGTTGTCAATCC
65 CTGATCGGAGAGGCAAAATGCGAAAGCCTGGGATCGACCCGACCCCTCCTACCTGCTGTCAATCC
* * * *
23324789 TGCTGCCACAACCCTCGGTCCGGTTCGAT
130 CGCTACCACAACCCTCGGTCCGATTCGAG
23324818 CTTAGACTGGGAATGAACTTCATATGC
1 CTTAGACTGGGAATGAACTTCATATGC
23324845 TTAGATCGGG
Statistics
Matches: 147, Mismatches: 34, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
157 6 0.04
158 59 0.40
159 80 0.54
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACACACGAAACGAGCATACGGGCGCTCAGC
TGATCGGAGAGGCAAAATGCGAAAGCCTGGGATCGACCCGACCCCTCCTACCTGCTGTCAATCCC
GCTACCACAACCCTCGGTCCGATTCGAG
Found at i:23326954 original size:26 final size:26
Alignment explanation
Indices: 23326916--23326966 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
23326906 GGCTCAAACT
*
23326916 CTTAGACTGGGAATGAACTCTGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
23326942 CTTAGACAT-GGAATGTACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
23326967 GCCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:23327754 original size:184 final size:184
Alignment explanation
Indices: 23327457--23328090 Score: 716
Period size: 184 Copynumber: 3.4 Consensus size: 184
23327447 TAGACATGGA
* * * * * ** * * ** *
23327457 ATGAACTCCCTATGCCTAAGCTAACCCATGAAATGGGCGTGCCGGTGCTCAGCTGGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCACCCAGCCGACCGAAGAGG
* * * * * * ** * *
23327522 CAGAATGCACAAGTTGGGGATCAGCTTGGTCCCCCCTGCGTGCTGTCAATCCTGCTACCGCAACC
66 CAAAATACACAAGCTGAGGATCGGCCTACTCCCCCGTGCATGCTGTCAATCCTGCTACCGCAACC
23327587 CTCAGTCCATTCTGATCTTAGACTGGGAATGAACTCCATATACTTAGACTGGGG
131 CTCAGTCCATTCTGATCTTAGACTGGGAATGAACTCCATATACTTAGACTGGGG
23327641 ATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCACCCAGCCGACCGAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCACCCAGCCGACCGAAGAGG
*
23327706 CAAAATACGCAAGCTGAGGATCGGCCTACTCCCCCGTGCATGCTGTCAATCCTGCTACCGCAACC
66 CAAAATACACAAGCTGAGGATCGGCCTACTCCCCCGTGCATGCTGTCAATCCTGCTACCGCAACC
*
23327771 CTCAGTCGATTCTGATCTTAGACTGGGAATGAACTCCATATACTTAGACTGGGG
131 CTCAGTCCATTCTGATCTTAGACTGGGAATGAACTCCATATACTTAGACTGGGG
23327825 ATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCACCCAGCCGACCGAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCACCCAGCCGACCGAAGAGG
* ** * *
23327890 CAAAATGCACAAGCTGAGGATCGGCCTGGTCCCCTGTGCATGCTGCCAATCTTGCTGTTGGTCCT
66 CAAAATACACAAGCTGAGGATCGGCCTACTCCCCCGTGCATGCTGTCAATC---C---T-G--CT
** * * * * ** *
23327955 ACTGCTGCAACCCTTGGCCCAGTCTAATCTT-GACTGGGAATGAGCTCTGTATGCTTAGACAT-G
122 AC--C-GCAACCCTCAGTCCATTCTGATCTTAGACTGGGAATGAACTCCATATACTTAGAC-TGG
*
23328018 GA
183 GG
* * * * *
23328020 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-AGCTCAGTCGACCGGAGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCA-CCCAGCCGACCGAAGAG
*
23328084 GTAAAAT
65 GCAAAAT
23328091 GCGTAAGCCA
Statistics
Matches: 389, Mismatches: 47, Indels: 17
0.86 0.10 0.04
Matches are distributed among these distances:
184 270 0.69
187 1 0.00
190 1 0.00
191 1 0.00
193 4 0.01
194 1 0.00
195 91 0.23
196 20 0.05
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
ATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCACCCAGCCGACCGAAGAGG
CAAAATACACAAGCTGAGGATCGGCCTACTCCCCCGTGCATGCTGTCAATCCTGCTACCGCAACC
CTCAGTCCATTCTGATCTTAGACTGGGAATGAACTCCATATACTTAGACTGGGG
Found at i:23328553 original size:26 final size:26
Alignment explanation
Indices: 23328516--23328568 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23328506 CCGATCTGAT
*
23328516 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
*
23328542 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCATATG
23328568 C
1 C
23328569 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:23328799 original size:355 final size:358
Alignment explanation
Indices: 23328334--23330005 Score: 1706
Period size: 355 Copynumber: 4.7 Consensus size: 358
23328324 ACAAACGTTG
* * * * *
23328334 GTCCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGTAAC-GAGCGT
1 GTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAG-GCGT
* ** * * * *
23328398 GCAGGCATTCAGCTGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTCTATG
65 GCGGGCGCTCAGC-GGCTGGAGAGGTAGAATGCGCAAGTCAGGGATCAGCCCGATCCCC-CTATG
*
23328463 TGCTATCGATCCTGCTACTGGTTCTACTACCGCAACCTTCAGTCCGATCTGATCTTAGACTGGGA
128 TGCTATCGATCCTGCT-CTGGTCCTACTACCGCAACCTTCAGTCCGATCTGATCTTAGACTGGGA
* * *
23328528 ATGAACTCCATATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCG
192 ATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCG
* * * * * *
23328593 TTCGGGCGTTGAG-C-C-A-GCC-A-AAAAGGCATAATGCACAAGTCGGGGATCGGTCCGGTCCC
257 TGCGAGCGCTGAGCCACGAGGCCGACAAAAGGCATAATGCACAAGCCAGGGATCGGTCCGATCCC
* * * *
23328652 CCTTTGCGTGCTGCCAG-TCTCGCTGCCACAACCCTCG
322 CCTCTGCGTGCTACCGGTTC-CGCTGCCACAACCCTCA
* *
23328689 GTCTAACTGGGGCTTAGACATGGACTGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTG
1 GTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTG
* * * *
23328754 CGGGTGCTCAGTCGGTTGGAGAGGTAGAATGCGCAAGTTAGGGATCAACCCGATCCACCCTATGT
66 CGGGCGCTCAG-CGGCTGGAGAGGTAGAATGCGCAAGTCAGGGATCAGCCCGATCC-CCCTATGT
* * **
23328819 GCTA-CTGATCCTG--CT-G--------CCGCAACCCTCGGTCCGATCTGATCTTAGACTTTGAA
129 GCTATC-GATCCTGCTCTGGTCCTACTACCGCAACCTTCAGTCCGATCTGATCTTAGACTGGGAA
* * *
23328872 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGTGT
193 TGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGT
* * *
23328937 GCGAGCGCTGAGCCGATCGGAGAGGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCC
258 GCGAGCGCTGAGCC-A-C---GAGGCCGA-C-AAAAGGCATAATGCACAAGCCAGGGATCGGTCC
* *
23329002 GATCCCTCTCTGCGTGCTACCGGTTCCACTGCCACAACCCTCA
316 GATCCCCCTCTGCGTGCTACCGGTTCCGCTGCCACAACCCTCA
* * * * * * * *
23329045 ATCCAGCTAGGGCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCACGTAACAAGCGTG
1 GTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTG
* * * * *
23329110 CAGGCACTCAGCTGGCTGGAGAGGTAGAATGCGCAAGTCAGGGATCGGCCCGGTCCCCTCTGTGT
66 CGGGCGCTCAGC-GGCTGGAGAGGTAGAATGCGCAAGTCAGGGATCAGCCCGATCCCC-CTATGT
* * *
23329175 GCTGTCGATCCTGCTGCTGGTTCTACTACCGCAACCTTCAGTCCAATCTGATCTTAGACTGGGAA
129 GCTATCGATCCTGCT-CTGGTCCTACTACCGCAACCTTCAGTCCGATCTGATCTTAGACTGGGAA
* *
23329240 TGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGACCGT
193 TGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGT
* * * ** *
23329305 TCGGGCGCTGAG-C-C-A-GCC-A-GAAAGGCATAATGCACAAG-TTGGAGATCGGTCCGGTCCC
258 GCGAGCGCTGAGCCACGAGGCCGACAAAAGGCATAATGCACAAGCCAGG-GATCGGTCCGATCCC
* * ** *
23329363 CCTTTGTGTGCTGTCGG-TCTCGCTGCCACAACCCTCG
322 CCTCTGCGTGCTACCGGTTC-CGCTGCCACAACCCTCA
**
23329400 GTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTG
1 GTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTG
* * * * * *
23329465 CGGGTGCTCAGTCCG-TCGGAGAGGTAGAATGCGCAAGTTAGGGATCAACCCGATCCACCATACG
66 CGGGCGCTCAG-CGGCT-GGAGAGGTAGAATGCGCAAGTCAGGGATCAGCCCGATCC-CCCTATG
* * * **
23329529 TGCTA-CTGATCCTG--CT-G--------CCGCAACCCTCAATCCGGTCTGATCTTAGACTTTGA
128 TGCTATC-GATCCTGCTCTGGTCCTACTACCGCAACCTTCAGTCCGATCTGATCTTAGACTGGGA
*
23329582 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCG
192 ATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCG
*
23329647 TGCGAGCGCTGAGCCGATCGGAGAGGCCGACAGAAGAGGCATAATGCGCAAGCCAGGGATCGG-C
257 TGCGAGCGCTGAGCC-A-C---GAGGCCGACA-AA-AGGCATAATGCACAAGCCAGGGATCGGTC
*
23329711 CTGATCCCCCTCTACGTGCTACCGGTTCCGCTGCCACAACCCTCA
315 C-GATCCCCCTCTGCGTGCTACCGGTTCCGCTGCCACAACCCTCA
* * *
23329756 GTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACTGGCGTA
1 GTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTG
* * * *
23329821 CGGGCGCTCAGCCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGATCCCCC----TG
66 CGGGCGCTCAG-CGGCTGGAGAGGTAGAATGCGCAAGTCAGGGATCAGCCCGATCCCCCTATGTG
* * * * * * **
23329882 C-AT-G---CTG-TC-GATCCTGCTGCCGCAACCCTT-GGTTCGACCCAATCTTAGACTGGGAAT
130 CTATCGATCCTGCTCTGGTCCTACTACCGCAA-CCTTCAGTCCGATCTGATCTTAGACTGGGAAT
* *
23329939 GAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACGCACGAAATGAGCGTG
194 GAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTG
23330004 CG
259 CG
23330006 GACGCTCAGC
Statistics
Matches: 1089, Mismatches: 160, Indels: 136
0.79 0.12 0.10
Matches are distributed among these distances:
343 206 0.19
344 2 0.00
346 3 0.00
347 3 0.00
349 1 0.00
350 1 0.00
351 7 0.01
352 10 0.01
353 2 0.00
354 7 0.01
355 381 0.35
356 346 0.32
357 8 0.01
358 1 0.00
359 5 0.00
360 2 0.00
364 1 0.00
367 1 0.00
368 102 0.09
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (358 bp):
GTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTG
CGGGCGCTCAGCGGCTGGAGAGGTAGAATGCGCAAGTCAGGGATCAGCCCGATCCCCCTATGTGC
TATCGATCCTGCTCTGGTCCTACTACCGCAACCTTCAGTCCGATCTGATCTTAGACTGGGAATGA
ACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCG
AGCGCTGAGCCACGAGGCCGACAAAAGGCATAATGCACAAGCCAGGGATCGGTCCGATCCCCCTC
TGCGTGCTACCGGTTCCGCTGCCACAACCCTCA
Found at i:23328888 original size:26 final size:26
Alignment explanation
Indices: 23328859--23328911 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23328849 CCGATCTGAT
**
23328859 CTTAGACTTTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23328885 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23328911 C
1 C
23328912 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23329143 original size:356 final size:353
Alignment explanation
Indices: 23328616--23330005 Score: 1648
Period size: 356 Copynumber: 3.9 Consensus size: 353
23328606 CCAGCCAAAA
* * * * * * *
23328616 AGGCATAATGCACAAGTCGGGGATCGGTCCGGTCCCCCTTTGCGTGCTGCCAGTCTCGCTGCCAC
1 AGGCATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGGTCTCGCTGCCAC
* * * *
23328681 AACCCTCGGTCTAACTGGGGCTTAGACATGGACTGAACTCCCTATGCCTAAGCCAACCCATGAAA
66 AACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
* * * *
23328746 CAGGCGTGCGGGTGCTCAGTCGGTTGGAGAGGTAGAATGCGCAAGTTAGGGATCAACCCGATCCA
131 CAGGCGTGCGGGCGCTCAGCCGGCTGGAGAGGTAGAATGCGCAAGTCAGGGATCAACCCGATCC-
* **
23328811 CCCTATGTGCTACTGATCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTTTGAATGAA
195 CCCTATGTGCT-CTGATCCTGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAA
* * *
23328876 CTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGTGTGCGA
259 CTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGA
23328941 GCGCTGAGCCGATCGGAGAGGCCGACCGAAG
324 GCGCTGAGCCGATCGGAGAGGCCGA-CGAAG
* * *
23328972 AGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCTCTCTGCGTGCTACCGGT-TCCACTGCCA
1 AGGCATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGGTCT-CGCTGCCA
* * * * * *
23329036 CAACCCTCAATCCAGCTAGGGCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCACGTA
65 CAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
* * * * ** *
23329101 ACAAGCGTGCAGGCACTCAGCTGGCTGGAGAGGTAGAATGCGCAAGTCAGGGATCGGCCCGGTCC
130 ACAGGCGTGCGGGCGCTCAGCCGGCTGGAGAGGTAGAATGCGCAAGTCAGGGATCAACCCGATCC
* * * *
23329166 CCTCTGTGTGCTGTCGATCCTGCTGCTGGTTCTACTACCGCAACCTTCAGTCCAATCTGATCTTA
195 CC-CTATGTGCTCT-GAT-C--CTGCT-G--------CCGCAACCCTCAGTCCGATCTGATCTTA
*
23329231 GACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAA
246 GACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAA
* * *
23329296 AATGACCGTTCGGGCGCTGAG-C---C----A-GCC-A-GAA-
311 AATGAGCGTGCGAGCGCTGAGCCGATCGGAGAGGCCGACGAAG
** * * * * **
23329327 AGGCATAATGCACAAG-TTGGAGATCGGTCCGGTCCCCCTTTGTGTGCTGTCGGTCTCGCTGCCA
1 AGGCATAATGCACAAGCCAGG-GATCGGCCCGATCCCCCTCTGCGTGCTACCGGTCTCGCTGCCA
* *
23329391 CAACCCTCGGT-CTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
65 CAACCCTCAGTCCAG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
* * *
23329455 AACAGGCGTGCGGGTGCTCAGTCCGTC-GGAGAGGTAGAATGCGCAAGTTAGGGATCAACCCGAT
129 AACAGGCGTGCGGGCGCTCAG-CCGGCTGGAGAGGTAGAATGCGCAAGTCAGGGATCAACCCGAT
* * * * **
23329519 CCACCATACGTGCTACTGATCCTGCTGCCGCAACCCTCAATCCGGTCTGATCTTAGACTTTGAAT
193 CC-CCCTATGTGCT-CTGATCCTGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAAT
*
23329584 GAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTG
256 GAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTG
23329649 CGAGCGCTGAGCCGATCGGAGAGGCCGACAGAAG
321 CGAGCGCTGAGCCGATCGGAGAGGCCGAC-GAAG
* * *
23329683 AGGCATAATGCGCAAGCCAGGGATCGGCCTGATCCCCCTCTACGTGCTACCGGT-TCCGCTGCCA
1 AGGCATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGGTCT-CGCTGCCA
23329747 CAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
65 CAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
* * * * * * *
23329812 ACTGGCGTACGGGCGCTCAGCCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGATCC
130 ACAGGCGTGCGGGCGCTCAGCCGGCTGGAGAGGTAGAATGCGCAAGTCAGGGATCAACCCGATCC
** * * **
23329877 CCCTGCATGCTG-TC-GATCCTGCTGCCGCAACCCTTGGTTCGACCCAATCTTAGACTGGGAATG
195 CCCT--ATG-TGCTCTGATCCTGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATG
* *
23329940 AACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACGCACGAAATGAGCGTGC
257 AACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGC
23330005 G
322 G
23330006 GACGCTCAGC
Statistics
Matches: 866, Mismatches: 127, Indels: 83
0.80 0.12 0.08
Matches are distributed among these distances:
343 103 0.12
344 1 0.00
347 1 0.00
351 2 0.00
352 8 0.01
353 1 0.00
354 5 0.01
355 279 0.32
356 341 0.39
357 8 0.01
358 3 0.00
359 8 0.01
360 2 0.00
364 1 0.00
367 1 0.00
368 102 0.12
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (353 bp):
AGGCATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGGTCTCGCTGCCAC
AACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
CAGGCGTGCGGGCGCTCAGCCGGCTGGAGAGGTAGAATGCGCAAGTCAGGGATCAACCCGATCCC
CCTATGTGCTCTGATCCTGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACT
CCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGAGC
GCTGAGCCGATCGGAGAGGCCGACGAAG
Found at i:23329162 original size:711 final size:709
Alignment explanation
Indices: 23328343--23330011 Score: 2633
Period size: 711 Copynumber: 2.4 Consensus size: 709
23328333 GGTCCGACTG
* * *
23328343 GGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGTAACGAGCGTGCAGGCATTC
1 GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGTAACAAGCGTGCAGGCACTC
*
23328408 AGCTGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTCTATGTGCTATCGAT
66 AGCTGGCTGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTCT-TGTGCTATCGAT
23328473 CCTGCTACTGGTTCTACTACCGCAACCTTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCA
130 CCTGCT-CTGGTTCTACTACCGCAACCTTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCA
* * *
23328538 TATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTTCGGGCGTT
194 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTTCGGGCGCT
*
23328603 GAGCCAGCCAAAAAGGCATAATGCACAAGTCGGGGATCGGTCCGGTCCCCCTTTGCGTGCTGCCA
259 GAGCCAGCCAAAAAGGCATAATGCACAAGTCGGAGATCGGTCCGGTCCCCCTTTGCGTGCTGCCA
*
23328668 GTCTCGCTGCCACAACCCTCGGTCTAACTGGGGCTTAGACATGGACTGAACTCCCTATGCCTAAG
324 GTCTCGCTGCCACAACCCTCGGTCTAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* *
23328733 CCAACCCATGAAACAGGCGTGCGGGTGCTCAGTCGGTTGGAGAGGTAGAATGCGCAAGTTAGGGA
389 CCAACCCATGAAACAGGCGTGCGGGTGCTCAGTCCGTCGGAGAGGTAGAATGCGCAAGTTAGGGA
* * **
23328798 TCAACCCGATCCACCCTATGTGCTACTGATCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTA
454 TCAACCCGATCCACCATACGTGCTACTGATCCTGCTGCCGCAACCCTCAATCCGATCTGATCTTA
*
23328863 GACTTTGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAA
519 GACTTTGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAA
* *
23328928 AATGAGTGTGCGAGCGCTGAGCCGATCGGAGAGGCCGACCGAAGAGGCATAATGCGCAAGCCAGG
584 AATGAGCGTGCGAGCGCTGAGCCGATCGGAGAGGCCGACAGAAGAGGCATAATGCGCAAGCCAGG
* *
23328993 GATCGGCCCGATCCCTCTCTGCGTGCTACCGGTTCCACTGCCACAACCCTCAATCCAGCTA
649 GATCGGCCCGATCCCCCTCTACGTGCTACCGGTTCCACTGCCACAACCCTCAATCCAGCTA
*
23329054 GGGCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCACGTAACAAGCGTGCAGGCACTC
1 GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGTAACAAGCGTGCAGGCACTC
* *
23329119 AGCTGGCTGGAGAGGTAGAATGCGCAAGTCAGGGATCGGCCCGGTCCCCTCTGTGTGCTGTCGAT
66 AGCTGGCTGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTCT-TGTGCTATCGAT
*
23329184 CCTGCTGCTGGTTCTACTACCGCAACCTTCAGTCCAATCTGATCTTAGACTGGGAATGAACTCCA
130 CCTGCT-CTGGTTCTACTACCGCAACCTTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCA
*
23329249 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGACCGTTCGGGCGCT
194 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTTCGGGCGCT
* * * * *
23329314 GAGCCAGCCAGAAAGGCATAATGCACAAGTTGGAGATCGGTCCGGTCCCCCTTTGTGTGCTGTCG
259 GAGCCAGCCAAAAAGGCATAATGCACAAGTCGGAGATCGGTCCGGTCCCCCTTTGCGTGCTGCCA
*
23329379 GTCTCGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
324 GTCTCGCTGCCACAACCCTCGGTCTAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
23329444 CCAACCCATGAAACAGGCGTGCGGGTGCTCAGTCCGTCGGAGAGGTAGAATGCGCAAGTTAGGGA
389 CCAACCCATGAAACAGGCGTGCGGGTGCTCAGTCCGTCGGAGAGGTAGAATGCGCAAGTTAGGGA
*
23329509 TCAACCCGATCCACCATACGTGCTACTGATCCTGCTGCCGCAACCCTCAATCCGGTCTGATCTTA
454 TCAACCCGATCCACCATACGTGCTACTGATCCTGCTGCCGCAACCCTCAATCCGATCTGATCTTA
23329574 GACTTTGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAA
519 GACTTTGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAA
23329639 AATGAGCGTGCGAGCGCTGAGCCGATCGGAGAGGCCGACAGAAGAGGCATAATGCGCAAGCCAGG
584 AATGAGCGTGCGAGCGCTGAGCCGATCGGAGAGGCCGACAGAAGAGGCATAATGCGCAAGCCAGG
* * * *
23329704 GATCGGCCTGATCCCCCTCTACGTGCTACCGGTTCCGCTGCCACAACCCTCAGTCCAGCTG
649 GATCGGCCCGATCCCCCTCTACGTGCTACCGGTTCCACTGCCACAACCCTCAATCCAGCTA
* * * ** * * *
23329765 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACTGGCGTACGGGCGCTC
1 GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGTAACAAGCGTGCAGGCACTC
* * * * * *
23329830 AGCCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGATCCCC-C---TGC-AT-G---
66 AGCTGGCTGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTCTTGTGCTATCGATC
* * * * * * * **
23329886 CTG-TC-GATCCTGCTGCCGCAACCCTT-GGTTCGACCCAATCTTAGACTGGGAATGAACTCCAT
131 CTGCTCTGGTTCTACTACCGCAA-CCTTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCAT
* * * * *
23329948 ATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACGCACGAAATGAGCGTGCGGACGCT
195 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTTCGGGCGCT
23330012 CAGCTGACAA
Statistics
Matches: 886, Mismatches: 71, Indels: 15
0.91 0.07 0.02
Matches are distributed among these distances:
698 100 0.11
699 5 0.01
700 1 0.00
701 3 0.00
704 1 0.00
705 1 0.00
706 3 0.00
710 1 0.00
711 771 0.87
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (709 bp):
GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGTAACAAGCGTGCAGGCACTC
AGCTGGCTGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTCTTGTGCTATCGATC
CTGCTCTGGTTCTACTACCGCAACCTTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCATA
TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTTCGGGCGCTGA
GCCAGCCAAAAAGGCATAATGCACAAGTCGGAGATCGGTCCGGTCCCCCTTTGCGTGCTGCCAGT
CTCGCTGCCACAACCCTCGGTCTAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
AACCCATGAAACAGGCGTGCGGGTGCTCAGTCCGTCGGAGAGGTAGAATGCGCAAGTTAGGGATC
AACCCGATCCACCATACGTGCTACTGATCCTGCTGCCGCAACCCTCAATCCGATCTGATCTTAGA
CTTTGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAA
TGAGCGTGCGAGCGCTGAGCCGATCGGAGAGGCCGACAGAAGAGGCATAATGCGCAAGCCAGGGA
TCGGCCCGATCCCCCTCTACGTGCTACCGGTTCCACTGCCACAACCCTCAATCCAGCTA
Found at i:23329256 original size:26 final size:26
Alignment explanation
Indices: 23329227--23329279 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23329217 CCAATCTGAT
23329227 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
23329253 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
23329279 C
1 C
23329280 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23329599 original size:26 final size:26
Alignment explanation
Indices: 23329570--23329622 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23329560 CCGGTCTGAT
**
23329570 CTTAGACTTTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23329596 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23329622 C
1 C
23329623 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23329961 original size:26 final size:26
Alignment explanation
Indices: 23329925--23329977 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23329915 TCGACCCAAT
23329925 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
23329951 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
23329977 C
1 C
23329978 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23331192 original size:26 final size:26
Alignment explanation
Indices: 23331149--23331199 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
23331139 TTGGTCCGAT
* *
23331149 CTTAGACTAGGAATGAACTCTGTATA
1 CTTAGACTAGGAAGGAACTCCGTATA
* *
23331175 CTTAGACTGGGGAGGAACTCCGTAT
1 CTTAGACTAGGAAGGAACTCCGTAT
23331200 GCCTAAGCCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAAGGAACTCCGTATA
Found at i:23332139 original size:158 final size:158
Alignment explanation
Indices: 23331542--23332149 Score: 549
Period size: 159 Copynumber: 3.8 Consensus size: 158
23331532 AACTCCATAT
* * *
23331542 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * **
23331607 CCGACTGGAAAGGTAGAATGCATAAGTCGGGGACCGACCCGGTGCCCCCCTGCGTGCTATCGATC
66 CCGACCGGAAAGGCAGAATGCGCAAGCCAGGGATAGACCCGGT-CCCCCCTGCGTGCTATCGATC
* ** * *
23331672 CTGTTACTGCAACCCTTGGTGCGGTCT-GA
130 CTGCTACCACAACCCTTGGTCCGG-CTGGG
* ** * * * * *
23331701 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * ** * * * *
23331765 GCCGATCGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGGTCCCCCTCTGCGTACTATTGGT
65 GCCGACCGGAAAGGCAGAATGCGCAAGCCAGGGATAGACCCGGTCCCCC-CTGCGTGCTATCGAT
* ** **
23331830 CCCGCTACCACAACCCTCAGTCCCACTGGG
129 CCTGCTACCACAACCCTTGGTCCGGCTGGG
* * * *
23331860 GCTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCACG-AACGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** ** * * * * * * *
23331924 CCGGCCGGAAAAACCTAATGCGTAAGCCAGGGATCAG-CCTGATCCCCTTCTGTGTGCTGTCGGT
66 CCGACCGGAAAGGCAGAATGCGCAAGCCAGGGAT-AGACCCGGTCCCC-CCTGCGTGCTATCGAT
*
23331988 CCTGCTGCCACAACCCTTGGTCCGGCTGGG
129 CCTGCTACCACAACCCTTGGTCCGGCTGGG
* * * * *
23332018 GCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCACGAAACGGGTGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * *
23332083 TTGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATAGACCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGACCGGAAAGGCAGAATGCGCAAGCCAGGGATAGACCCGGTCCCCCCTGCGTGCTATCGATCC
23332148 TG
131 TG
23332150 TTGTCGCAAC
Statistics
Matches: 354, Mismatches: 87, Indels: 17
0.77 0.19 0.04
Matches are distributed among these distances:
158 151 0.43
159 202 0.57
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAAAGGCAGAATGCGCAAGCCAGGGATAGACCCGGTCCCCCCTGCGTGCTATCGATCC
TGCTACCACAACCCTTGGTCCGGCTGGG
Found at i:23332925 original size:26 final size:26
Alignment explanation
Indices: 23332885--23332935 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
23332875 TAATCAGATC
*
23332885 TTAGACTAGGAATGAACTCCGTATGA
1 TTAGACTAGGAATGAACTCCATATGA
* *
23332911 TTAGACTGGGGATGAACTCCATATG
1 TTAGACTAGGAATGAACTCCATATG
23332936 CCTAAGTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGA
Found at i:23335023 original size:26 final size:26
Alignment explanation
Indices: 23334987--23335039 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23334977 CCGGTCTGAT
*
23334987 CTTAGACTGGGAATCAACTTTGTATG
1 CTTAGACTGGGAATCAACTCTGTATG
* *
23335013 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATCAACTCTGTATG
23335039 C
1 C
23335040 CTAAGGCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCTGTATG
Found at i:23335690 original size:26 final size:26
Alignment explanation
Indices: 23335652--23335704 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
23335642 GGCTCAAAAT
23335652 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
23335678 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
23335704 C
1 C
23335705 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:23336261 original size:157 final size:159
Alignment explanation
Indices: 23335678--23336278 Score: 508
Period size: 157 Copynumber: 3.8 Consensus size: 159
23335668 ACTTCGTATG
* * * * *
23335678 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGTGGGGGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTTAGC
* * * * *
23335743 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCTGGTCCCCC-CTACGTGCTGTCGATC
66 CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGACCTGATCCCCCTCTGCGTGCTGCCGATC
* * ** *
23335806 CTACTGCAGCAACCCTCGCT-TGGTCCGAT
131 CTACT-CCGCAACCCTCGATCCAGTGCGAT
* * ** * *
23335835 CTTAGAC-TGGGAATGAACTCCATATGCATAAGTTAACCCACGAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTTAG
* * * * * ** * * *
23335899 CCAACC-GAGGAGGTATAATGCGCAAGCCAAGGAT-TGTGCT-AGTCCCCCTTTGCGTGCTACTG
65 CCGACCGGA-GAGGCAGAATGCGCAAGCCAGGGATCAGACCTGA-TCCCCCTCTGCGTGCTGCCG
* ** ** * **
23335961 GTCCCGCTGCCATAACCCTCGATCCGACTG-GGG
128 ATCCTACT-CCGCAACCCTCGATCC-AGTGCGAT
* * * *
23335994 CTTAAACATGGAATGAACTCCCTATGCCTAACCCAACCCACGAAATGGGCGTGCGGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTTAGC
** * *
23336059 CGACTAGAGAGGCAGAATGCGCAAGCCAGGGATC-GACCAGGTCCCCC-CTGCGTGCTGCCGATC
66 CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGACCTGATCCCCCTCTGCGTGCTGCCGATC
* *
23336122 CTACTATCGCAACCCTCGGTCCAGTGCGAT
131 CTACT-CCGCAACCCTCGATCCAGTGCGAT
* * * * * * *
23336152 CTTAGACTTGGAATGAACTCTGTATGCCTAAGTCAACCC-TGAAATGAGCGTGCAGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTTAGC
* * *
23336216 C-AGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAG-CCTGATCCCCCTATGCGTGCTGCCGAT
66 CGA-CCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGACCTGATCCCCCTCTGCGTGCTGCCGAT
23336279 GCCGCTGCCA
Statistics
Matches: 342, Mismatches: 87, Indels: 29
0.75 0.19 0.06
Matches are distributed among these distances:
156 5 0.01
157 145 0.42
158 100 0.29
159 88 0.26
160 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTTAGC
CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGACCTGATCCCCCTCTGCGTGCTGCCGATC
CTACTCCGCAACCCTCGATCCAGTGCGAT
Found at i:23336263 original size:316 final size:323
Alignment explanation
Indices: 23335677--23336443 Score: 817
Period size: 316 Copynumber: 2.4 Consensus size: 323
23335667 AACTTCGTAT
** * * *
23335677 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGTGGGGGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
* * *
23335742 CCGA-TCGGAGAGGCAGAATGCGCAAGCCGGGGATC-AGCCTGGTCCCCCCTACGTGCTGTCGAT
66 CCGACT-GGAGAGGCAGAATGCGCAAGCCAGGGATCGA-CC-GGTCCCCCCTGCGTGCTGCCGAT
** *
23335805 CCTACTGCAGCAACCCTCGCTTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTTA
128 CCTACTGCAGCAACCCTCGCTCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCA
* ** * * *
23335870 ACCCACGAAATGAGCGTGCGGGTGCTGAGCCAACCGAGGAGGTATAATGCGCAAGCCAAGGATTG
193 ACCCACGAAATGAGCGTGCAGGCACTCAGCCAACCGAGGAGGCATAATGCGCAAGCCAAGGATAG
* * * * * *
23335935 TGCTAGTCCCCCTTTGCGTGCTACTGGTCCCGCTGCCA-T-AAC-CCTCGA-TC-C-G-A-CTGG
258 TCCTAGTCCCCCTATGCGTGCTACCGATCCCGCTGCCAGTCAACACCACAACTCTCAGTAGCTGG
23335992 G
323 G
* * * *
23335993 GCTTAAACATGGAATGAACTCCCTATGCCTAACCCAACCCACGAAATGGGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
*
23336058 CCGACTAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCAGGTCCCCCCTGCGTGCTGCCGATCC
66 CCGACTGGAGAGGCAGAATGCGCAAGCCAGGGATCGACC-GGTCCCCCCTGCGTGCTGCCGATCC
* * * * ** *
23336123 TACTATC-GCAACCCTCGGTCCAGTGCGATCTTAGACTTGGAATGAACTCTGTATGCCTAAGTCA
130 TACT-GCAGCAACCCTCGCT-CAGTCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCA
* * **
23336187 ACCC-TGAAATGAGCGTGCAGGCACTCAGCCAGCCG-GAGAGGCATAATGCGCAAGCCGGGGATC
193 ACCCACGAAATGAGCGTGCAGGCACTCAGCCAACCGAG-GAGGCATAATGCGCAAGCCAAGGAT-
* * *
23336250 AG-CCT-GATCCCCCTATGCGTGCTGCCGATGCCGCTGCCAGTCCTACTACCACAACTCTCAGTC
256 AGTCCTAG-TCCCCCTATGCGTGCTACCGATCCCGCTGCCAGT-CAAC-ACCACAACTCTCAG--
23336313 TAGCTGGG
316 TAGCTGGG
* * *** *
23336321 GCTTAGATATGGAATGAACTCCCTTTGCCTAAGCCAACCCACGAAACGAGCGTGCGATTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
* * * * *
23336386 TCGACCGGAAAGGCAGAATGCGTAAGCCAAGGATCGACTCGGTCCCCCCCTGCGTGCT
66 CCGACTGGAGAGGCAGAATGCGCAAGCCAGGGATCGAC-CGGT-CCCCCCTGCGTGCT
23336444 ATCGATCTTG
Statistics
Matches: 371, Mismatches: 59, Indels: 29
0.81 0.13 0.06
Matches are distributed among these distances:
315 2 0.01
316 203 0.55
317 45 0.12
319 2 0.01
321 4 0.01
322 2 0.01
323 1 0.00
324 1 0.00
327 1 0.00
328 95 0.26
329 15 0.04
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (323 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
CCGACTGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCGGTCCCCCCTGCGTGCTGCCGATCCT
ACTGCAGCAACCCTCGCTCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACC
CACGAAATGAGCGTGCAGGCACTCAGCCAACCGAGGAGGCATAATGCGCAAGCCAAGGATAGTCC
TAGTCCCCCTATGCGTGCTACCGATCCCGCTGCCAGTCAACACCACAACTCTCAGTAGCTGGG
Found at i:23336531 original size:26 final size:26
Alignment explanation
Indices: 23336493--23336545 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23336483 CCGATCCGAT
23336493 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
23336519 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
23336545 C
1 C
23336546 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23337025 original size:26 final size:26
Alignment explanation
Indices: 23336996--23337046 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
23336986 GATCCGATCC
*
23336996 TAGACTG-GCAATGAACTCTGTATGCT
1 TAGACTGAG-AATGAACTCCGTATGCT
*
23337022 TAGACTGAGGATGAACTCCGTATGC
1 TAGACTGAGAATGAACTCCGTATGC
23337047 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTGAGAATGAACTCCGTATGCT
Found at i:23337403 original size:26 final size:26
Alignment explanation
Indices: 23337374--23337427 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
23337364 TTGATCCGAT
23337374 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
23337400 CTTAGACATTGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23337426 CT
1 CT
23337428 AAAGCCAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23338393 original size:26 final size:26
Alignment explanation
Indices: 23338357--23338408 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
23338347 CTAGTTCGAT
23338357 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23338383 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23338409 TCTCAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23338820 original size:158 final size:157
Alignment explanation
Indices: 23338533--23338822 Score: 366
Period size: 158 Copynumber: 1.8 Consensus size: 157
23338523 CCTACTACTG
* * *
23338533 CAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAAGTACGATGCCTAAGCCAACCCACGAAA
1 CAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTACGATGCCAAAGCCAACCCACGAAA
* * * * * *
23338598 TGAACGTGCGGGCGCTCAGTCGGTCGGAGAGACAGAATGCGCAAGCCGGGGATCGGCCCGATCCC
66 TGAACGTGCGGGCGCTAAGCCAGTCGGAGAGACAGAATGCGCAAGCCAGGGATCAGCCCAATCCC
23338663 CCATGCGTGCTGTCGATCCTGCTACGT
131 CCATGCGTGCTGTCGATCCTGCTACGT
* ** * * * *
23338690 CAACCCTCAGTCTGATTTGATCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCATGAA
1 CAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTACG-ATGCCAAAGCCAACCCACGAA
* * * * *
23338755 ATGAGCGT-CTGGGTGCTAAGCCAGTCGGAGAGGCATAATGCGCAAGTCAGGGATCAGCCCAATC
65 ATGAACGTGC-GGGCGCTAAGCCAGTCGGAGAGACAGAATGCGCAAGCCAGGGATCAGCCCAATC
23338819 CCCC
129 CCCC
23338823 TCTAAGTGCT
Statistics
Matches: 110, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
157 37 0.34
158 73 0.66
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.19
Consensus pattern (157 bp):
CAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTACGATGCCAAAGCCAACCCACGAAA
TGAACGTGCGGGCGCTAAGCCAGTCGGAGAGACAGAATGCGCAAGCCAGGGATCAGCCCAATCCC
CCATGCGTGCTGTCGATCCTGCTACGT
Found at i:23339665 original size:159 final size:159
Alignment explanation
Indices: 23339249--23339679 Score: 436
Period size: 159 Copynumber: 2.7 Consensus size: 159
23339239 AACTCCGTAT
* * * *
23339249 GCTTAGACATGAAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAG
* ** * * * *
23339314 TCGGCCGAAGAGGTAGAATGCGTAAGTCGGGGACCGACCCGGTCTCCCTCTGCGTGCCATCGATC
66 TCGGCCGAAGAGGTAGAATGCGTAAGCCGGGGATTGACCCGATCCCCCTCTACGTGCCATCAATC
* *
23339379 CTGCTACCATAACCCTCAGTTTGATCCGA
131 CTGCTACCACAACCCTCAGTTCGATCCGA
* * * * * *
23339408 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCA
* * * * * * * * ** **
23339472 GTCGACCGGAGAGGCATAATGTGCAAGCTGGGGATTGGCTTGATCCCCCTCTACGTGCTGTCAAT
65 GTCGGCCGAAGAGGTAGAATGCGTAAGCCGGGGATTGACCCGATCCCCCTCTACGTGCCATCAAT
** * * ** *
23339537 TTTGCTACCACAACCCTCGGTTCGGTTGGG
130 CCTGCTACCACAACCCTCAGTTCGATCCGA
* *
23339567 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGGCGTACAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAG
* *
23339632 -CTGGTCGAAGAGGTAGAATGCGTAAGCCGGGGATT-AGCCCGGTCCCCC
66 TC-GGCCGAAGAGGTAGAATGCGTAAGCCGGGGATTGA-CCCGATCCCCC
23339680 CTGCATGCTA
Statistics
Matches: 210, Mismatches: 58, Indels: 8
0.76 0.21 0.03
Matches are distributed among these distances:
158 2 0.01
159 207 0.99
160 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAG
TCGGCCGAAGAGGTAGAATGCGTAAGCCGGGGATTGACCCGATCCCCCTCTACGTGCCATCAATC
CTGCTACCACAACCCTCAGTTCGATCCGA
Found at i:23339762 original size:26 final size:26
Alignment explanation
Indices: 23339726--23339778 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23339716 CTAGTCCGAA
*
23339726 CTTAGGCTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
* *
23339752 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
23339778 C
1 C
23339779 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:23339974 original size:26 final size:26
Alignment explanation
Indices: 23339923--23339975 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
23339913 CCGGTCTGAT
** *
23339923 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACAACATATG
23339949 CTTAGACAT-GGAATGAACAACATATG
1 CTTAGAC-TGGGAATGAACAACATATG
23339975 C
1 C
23339976 CCAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACAACATATG
Found at i:23340429 original size:26 final size:26
Alignment explanation
Indices: 23340400--23340452 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23340390 CCGTTCTGAT
23340400 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
23340426 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
23340452 C
1 C
23340453 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:23340639 original size:26 final size:26
Alignment explanation
Indices: 23340610--23340662 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23340600 CCGGTCCGAT
23340610 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
23340636 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23340662 C
1 C
23340663 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23342325 original size:26 final size:26
Alignment explanation
Indices: 23342284--23342336 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23342274 CCAGTCTGAT
23342284 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23342310 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
23342336 C
1 C
23342337 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23342442 original size:514 final size:514
Alignment explanation
Indices: 23341454--23342604 Score: 1241
Period size: 514 Copynumber: 2.2 Consensus size: 514
23341444 ACTCCGTATG
* ** *
23341454 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGC
* *** * *** * *
23341519 CGACCGGAGAGGCAGAATGCGCAAGTCGAGGATTGGCCCGATCCCCCTTTGCATTTTGCCGGTCC
66 CGACCGAAGAGGCAGAATGCGCAAGTCGAGGATCAACCCGATCCCCCTTTACAAGCTACCAGTCC
* * * * *
23341584 CGCTGCCACAACCCTCGGTCCAGCTGGTGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAG
131 CACTACCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* ** * *
23341649 CCCATGAAATAGACGTGCGGCGTTCAGCCGGACAGAGAGGCAGAATGTGCAAGCTGTGGATTGGC
196 CCCATGAAATAGACGTGCGGCGCTCAGCCGGACAGAGAGGCAGAATGAACAAGCTGAGGATTAGC
* * *
23341714 CCGGTCCCCCCTGCGTGCTTCCGATGCTGCTGTCGCAACCCCCGGTCCTATGCGATCTTAGACTG
261 CCGGTCCCCCCTGCGTGCTTCCGATCCTGCTATCGCAACCCCCGATCCTATGCGATCTTAGACTG
* * *
23341779 GGAATGAACTCTGTATGCTTAGACTATGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGA
326 GGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGA
* ** * * * *
23341844 GCGTGTGGGTGCTCAACCGACCGAAGAGGCCGACCGGAGAGGTAGAATGCGCAAGTCGGGGATCG
391 GCGTGAGGGAACACAACCGACCGAAGAGGCCGACCAGAGAGGTAGAATGCGCAAGTCGAGGATCA
* *
23341909 GCCCGGTACCTCCCTGCGTGCTGTCGATCCTACTTTTGCAACCCTCGATTCGATCCGAT
456 GCCCGATACCCCCCTGCGTGCTGTCGATCCTACTTTTGCAACCCTCGATTCGATCCGAT
* * * * *
23341968 CTTAGAC-TGTGAATGAACTCTGTATGCCAAAGTCAACCCATGAAACGAGCGTTCGAGTGCTGAG
1 CTTAGACATG-GAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
* * * *
23342032 CCGACCGAAGAGGCATAATGCGTAAGTCGAGGATCAACTCGAT-CCCCTTCTATAAGCTACCAGT
65 CCGACCGAAGAGGCAGAATGCGCAAGTCGAGGATCAACCCGATCCCCCTT-TACAAGCTACCAGT
**
23342096 CCCACTACCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
129 CCCACTACCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * *
23342161 AACCCATGAAATGGATGTGCGGACGCTCAGTCGG-CTGCAGAGGCAGAATGAACAAG-TCGAGGA
194 AACCCATGAAATAGACGTGCGG-CGCTCAGCCGGACAG-AGAGGCAGAATGAACAAGCT-GAGGA
* *
23342224 TTAGCCCGGT-CCCCCTGCGTGCTAT-CGATCCTGCTATCGCAACGCTCGATCC-A-GTCTGATC
256 TTAGCCCGGTCCCCCCTGCGTGCT-TCCGATCCTGCTATCGCAACCCCCGATCCTATG-C-GATC
23342285 TTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACT-TCGTATGCCTAAGTCAACCC
318 TTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCT-GTATGCCTAAGTCAACCC
* * * ** * * *
23342349 ACGAAATGTGCGTGAGGGAACACAACC-AGCC-AGAGAGGTCGGTCAGAGGGGTATAATGTGCAA
382 ACGAAACGAGCGTGAGGGAACACAACCGA-CCGA-AGAGGCCGACCAGAGAGGTAGAATGCGCAA
** *
23342412 GTCGAGGATCAGCCCGAT-CCCCCTCTGCGTGCTACCGATCCCGCTGCTGGTCCTGCTGCCACAA
445 GTCGAGGATCAGCCCGATACCCCC-CTGCGTGCTGTCGAT--C-CTACT--T--T--TG---CAA
* * **
23342476 CCCTC-ATCCGA-CTGGGG
497 CCCTCGATTCGATC-CGAT
* * * * *
23342493 CTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCATGCAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGC
* * ** **
23342558 CGACCGGAGAGGTAGAATATGCAAGTCGAGGATCGGCCCGATCCCCC
66 CGACCGAAGAGGCAGAATGCGCAAGTCGAGGATCAACCCGATCCCCC
23342605 CCTGCATGCT
Statistics
Matches: 520, Mismatches: 90, Indels: 42
0.80 0.14 0.06
Matches are distributed among these distances:
512 1 0.00
513 17 0.03
514 348 0.67
515 39 0.08
516 1 0.00
517 4 0.01
519 1 0.00
521 1 0.00
523 2 0.00
524 1 0.00
525 91 0.17
526 14 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (514 bp):
CTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGC
CGACCGAAGAGGCAGAATGCGCAAGTCGAGGATCAACCCGATCCCCCTTTACAAGCTACCAGTCC
CACTACCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCATGAAATAGACGTGCGGCGCTCAGCCGGACAGAGAGGCAGAATGAACAAGCTGAGGATTAGC
CCGGTCCCCCCTGCGTGCTTCCGATCCTGCTATCGCAACCCCCGATCCTATGCGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGA
GCGTGAGGGAACACAACCGACCGAAGAGGCCGACCAGAGAGGTAGAATGCGCAAGTCGAGGATCA
GCCCGATACCCCCCTGCGTGCTGTCGATCCTACTTTTGCAACCCTCGATTCGATCCGAT
Done.