Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 231 of 402
Found at i:23343002 original size:26 final size:26
Alignment explanation
Indices: 23342952--23343002 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
23342942 CGGTCTGATG
* *
23342952 TTAGACTGGGAATGAACTTCATATGT
1 TTAGACTGGGAATGAAATCCATATGT
* *
23342978 TTAGACTGGGGATGAAATCCGTATG
1 TTAGACTGGGAATGAAATCCATATG
23343003 CCTAAGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAAATCCATATGT
Found at i:23343739 original size:26 final size:26
Alignment explanation
Indices: 23343688--23343740 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23343678 GGCTCAAACT
**
23343688 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCAATATG
23343714 CTTAGACAT-GGAATGAACTCAATATG
1 CTTAGAC-TGGGAATGAACTCAATATG
23343740 C
1 C
23343741 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAATATG
Found at i:23344278 original size:26 final size:25
Alignment explanation
Indices: 23344239--23344290 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
23344229 ATGGTCCGAT
23344239 CTTAGACTGGAATGAACTCCATATG
1 CTTAGACTGGAATGAACTCCATATG
*
23344264 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCATATG
23344290 C
1 C
23344291 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:23344774 original size:26 final size:26
Alignment explanation
Indices: 23344738--23344790 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23344728 CTGATCTGAT
23344738 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23344764 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23344790 C
1 C
23344791 CTGGGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23345133 original size:26 final size:26
Alignment explanation
Indices: 23345104--23345156 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23345094 CTGGTCTGAT
* *
23345104 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACACCGTATG
23345130 CTTAGACATGGAATGAACACCGTATG
1 CTTAGACATGGAATGAACACCGTATG
23345156 C
1 C
23345157 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACACCGTATG
Found at i:23345330 original size:26 final size:26
Alignment explanation
Indices: 23345301--23345353 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23345291 CTGGTCTGAT
* *
23345301 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
23345327 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
23345353 C
1 C
23345354 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:23345375 original size:196 final size:194
Alignment explanation
Indices: 23344936--23345576 Score: 789
Period size: 196 Copynumber: 3.3 Consensus size: 194
23344926 CGTCTGGGCT
* * *
23344936 TTAGACATGGAATGAACAT-CGTATGCCTAAGCCAACCCATGAAACGAGCATGCAGGCGCTCAGC
1 TTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
23345000 CGGCTGGAGAGGCAGAATGTGCAAATCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCAATCCT
65 CGGCTGGAGAGGCAGAATGTGCGAATCGGGGATC-GCCCGATCCCCCCTGCGTGCTGCCAATCCT
*
23345065 GGTGC-GGTCCTGCTATCGCAACCCTT-GGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTA
129 GAT-CTGGTCCTGCTATCGCAA-CCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTA
23345128 TGC
192 TGC
* ** * *
23345131 TTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCCATAAAACGAGCGTACGGGTGCTCAGC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
23345196 CGGCTGGAGAGGCAGAATGTGCGAACCGAGGATCAGCCCGATCCCCCCTGTGTGCTGCCAATCCT
65 CGGCTGGAGAGGCAGAATGTGCGAATCGGGGATC-GCCCGATCCCCCCTGCGTGCTGCCAATCCT
* *
23345261 GCTACTGGTCCTGCTATCGCAACCTTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
129 GAT-CTGGTCCTGCTATCGCAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
23345326 GC
193 GC
* * *
23345328 TTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
*
23345393 GG-TCGGAGAGGCA-AA--TGCGTAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTG----T-
66 GGCT-GGAGAGGCAGAATGTGCG-AA-TCGGGGATCG-CCCGATCCCCCCTGCGTGCTGCCAATC
* * * * *
23345449 C-GATCTTGT--TGC---CACAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTA
127 CTGATCTGGTCCTGCTATCGCAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTA
23345508 TGC
192 TGC
* * * *
23345511 TTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGACGCTCAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
23345575 CG
65 CG
23345577 ACCAGAGAGG
Statistics
Matches: 397, Mismatches: 40, Indels: 30
0.85 0.09 0.06
Matches are distributed among these distances:
182 1 0.00
183 102 0.26
186 3 0.01
188 4 0.01
189 2 0.01
190 1 0.00
191 1 0.00
193 4 0.01
194 3 0.01
195 62 0.16
196 126 0.32
197 88 0.22
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (194 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCTGGAGAGGCAGAATGTGCGAATCGGGGATCGCCCGATCCCCCCTGCGTGCTGCCAATCCTGA
TCTGGTCCTGCTATCGCAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
Found at i:23345520 original size:26 final size:26
Alignment explanation
Indices: 23345484--23345536 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23345474 CTGGTCTAAT
23345484 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23345510 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23345536 C
1 C
23345537 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23346242 original size:26 final size:26
Alignment explanation
Indices: 23346204--23346256 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23346194 GGCTTAAAAT
23346204 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
23346230 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
23346256 C
1 C
23346257 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23346521 original size:158 final size:158
Alignment explanation
Indices: 23346231--23346533 Score: 365
Period size: 158 Copynumber: 1.9 Consensus size: 158
23346221 CTCCATATGC
* *
23346231 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAGCC
1 TTAGACATGGAATGAAATCCATATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCGCTCAGCC
** ** * ** * * * *
23346296 GGCCGGAGAGCCAGAATGCGCAAGTTGGGGATCGGCCTATCCCCCTCTACGTGCTGTCGGTCCTG
66 AACCGGAGAAACAGAATACGCAAGCCGGGGATCAGCCCATCCCCCTCTACGTGCTGCCGATCCTG
23346361 CTGCCACAACCCTCGATCTGGCTGGGGT
131 CTGCCACAACCCTCGATCTGGCTGGGGT
* ** * *
23346389 TTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCTGGCGCTCAGCC
1 TTAGACATGGAATGAAATCCATATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCGCTCAGCC
* * ** *
23346454 AACTGGAGAAACAGAATACGCAAGCCGGGGATTAGCCCAGTCCCCC-CTGTGTGCTGCCGATCTT
66 AACCGGAGAAACAGAATACGCAAGCCGGGGATCAGCCCA-TCCCCCTCTACGTGCTGCCGATCCT
* *
23346518 GCTGTCGCAACCCTCG
130 GCTGCCACAACCCTCG
23346534 GTTTGGTCTA
Statistics
Matches: 119, Mismatches: 25, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
158 113 0.95
159 6 0.05
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (158 bp):
TTAGACATGGAATGAAATCCATATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCGCTCAGCC
AACCGGAGAAACAGAATACGCAAGCCGGGGATCAGCCCATCCCCCTCTACGTGCTGCCGATCCTG
CTGCCACAACCCTCGATCTGGCTGGGGT
Found at i:23346551 original size:158 final size:158
Alignment explanation
Indices: 23346230--23346572 Score: 352
Period size: 158 Copynumber: 2.2 Consensus size: 158
23346220 ACTCCATATG
*
23346230 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCGCTCAGC
** ** * ** * * * *
23346295 CGGCCGGAGAGCCAGAATGCGCAAGTTGGGGATCGGCCTATCCCCCTCTACGTGCTGTCGGTCCT
66 CAACCGGAGAAACAGAATACGCAAGCCGGGGATCAGCCCATCCCCCTCTACGTGCTGCCGATCCT
**
23346360 GCTGCCACAACCCTCGATCTGGCTGGGGT
131 GCTGCCACAACCCTCGATCTGGCT-GAAT
* * ** * *
23346389 -TTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCTGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCGCTCAGC
* * ** *
23346453 CAACTGGAGAAACAGAATACGCAAGCCGGGGATTAGCCCAGTCCCCC-CTGTGTGCTGCCGATCT
66 CAACCGGAGAAACAGAATACGCAAGCCGGGGATCAGCCCA-TCCCCCTCTACGTGCTGCCGATCC
* * * *
23346517 TGCTGTCGCAACCCTCGGTTTGGTCT-AAT
130 TGCTGCCACAACCCTCGATCTGG-CTGAAT
*
23346546 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCATATGC
23346573 TTAGACCGGG
Statistics
Matches: 149, Mismatches: 31, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 139 0.93
159 8 0.05
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCGCTCAGC
CAACCGGAGAAACAGAATACGCAAGCCGGGGATCAGCCCATCCCCCTCTACGTGCTGCCGATCCT
GCTGCCACAACCCTCGATCTGGCTGAAT
Found at i:23346590 original size:26 final size:26
Alignment explanation
Indices: 23346546--23346598 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23346536 TTGGTCTAAT
*
23346546 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
* *
23346572 CTTAGACCGGGGATTAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
23346598 C
1 C
23346599 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:23347646 original size:26 final size:26
Alignment explanation
Indices: 23347610--23347662 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23347600 CCGGTCCGAT
23347610 CTTAGACTGGGAATGAACACCATATG
1 CTTAGACTGGGAATGAACACCATATG
* * *
23347636 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCATATG
23347662 C
1 C
23347663 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:23348380 original size:26 final size:26
Alignment explanation
Indices: 23348342--23348394 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23348332 GGCTCAAACT
23348342 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23348368 CTTAGACAT-GGAATTAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23348394 C
1 C
23348395 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23348813 original size:183 final size:183
Alignment explanation
Indices: 23348489--23348856 Score: 497
Period size: 183 Copynumber: 2.0 Consensus size: 183
23348479 TCCGAATGGG
* *
23348489 GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAGC
1 GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
23348554 CGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGTTATCGATCCT
66 CGACCGAAGAGGCAAAATGCGCAAGCCGGGGACCGGCCCGATCCCCCCTACGTGCTATCGATCCT
** *
23348619 ACTGTCGCAACCCTCGATCAGGTTCGATCTTAGACTGGGAATGAACTCTATAT
131 ACTACCGCAACCCTCGATCAGGTCCGATCTTAGACTGGGAATGAACTCTATAT
* * *
23348672 GCTTGGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
23348737 CC-AGCCGAAGAGGCAGAATGTGTAA-CCGGGGACCGGCCCGGTCCCCCCTACGTGCTGTCGATC
65 CCGA-CCGAAGAGGCAAAATGCGCAAGCCGGGGACCGGCCCGATCCCCCCTACGTGCTATCGATC
** * * *
23348800 CTGTTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTAT
129 CTACTACCGCAACCCTCGATCAGGTCCGATCTTAGACTGGGAATGAACTCTATAT
23348855 GC
1 GC
23348857 CTAAGTCAAC
Statistics
Matches: 160, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
183 104 0.65
184 56 0.35
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCAAAATGCGCAAGCCGGGGACCGGCCCGATCCCCCCTACGTGCTATCGATCCT
ACTACCGCAACCCTCGATCAGGTCCGATCTTAGACTGGGAATGAACTCTATAT
Found at i:23349087 original size:159 final size:157
Alignment explanation
Indices: 23348672--23349099 Score: 398
Period size: 159 Copynumber: 2.7 Consensus size: 157
23348662 AACTCTATAT
* * *
23348672 GCTTGGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
23348737 CCAGCCGAAGAGGCAGAATGTGTAA-CCGGGGACCGGCCCGGTCCCCCCTACGTGCTGTCGATCC
65 ACAGCCGAAGAGGCAGAATGTGTAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCC
*** * * *
23348801 TGTTACCGCAACCCTCGGTCCGGTCCGA
130 CACTACCACAACACTCGGTCCGCTCCGA
* * * * * * * *
23348829 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTTCGAGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * *
23348893 -ACTGGTCGGAGAGACATAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTCTACGTTCTGTC-A
64 GAC-AGCCGAAGAGGCAGAATGTGTAAGCCGGGGATCAGCCCGGTCCCCC-CTACGTGCTGTCGA
* *
23348956 GTCCCACTACCACAACACTCGGTCCGACT-GGG
127 -TCCCACTACCACAACACTCGGTCCG-CTCCGA
* * * *
23348988 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACCCATAAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
23349053 TCAGCCAAAGAGGCAGAATGTGTAAGCTGGGGATCAACCCGGTCCCC
65 ACAGCCGAAGAGGCAGAATGTGTAAGCCGGGGATCAGCCCGGTCCCC
23349100 TCTGCGCATT
Statistics
Matches: 206, Mismatches: 56, Indels: 16
0.74 0.20 0.06
Matches are distributed among these distances:
156 2 0.01
157 66 0.32
158 21 0.10
159 114 0.55
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGCGTGCGGGCGCTCAGA
CAGCCGAAGAGGCAGAATGTGTAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCCC
ACTACCACAACACTCGGTCCGCTCCGA
Found at i:23349183 original size:26 final size:26
Alignment explanation
Indices: 23349147--23349199 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23349137 CTAGTTTGAT
*
23349147 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
23349173 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
23349199 C
1 C
23349200 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:23349873 original size:25 final size:26
Alignment explanation
Indices: 23349832--23349883 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
23349822 CCAGTTCGAT
23349832 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
23349858 CTTAGACT-GGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
23349883 C
1 C
23349884 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 18 0.69
26 8 0.31
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:23350039 original size:684 final size:686
Alignment explanation
Indices: 23348962--23350237 Score: 1940
Period size: 685 Copynumber: 1.9 Consensus size: 686
23348952 GTCAGTCCCA
23348962 CTACCACAACACTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACC
1 CTACCACAACACTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACC
* ** * *
23349027 CATAAAACGGGCGTGCGGGCACTCAGTCAGCCAAAGAGGCAGAATGTGTAAGCTGGGGATCAACC
66 CACAAAACGGGCGTGCGGGCACTCACCCAGCCAAAGAGGCAGAATGTGCAAGCCGGGGATCAACC
* * * *
23349092 CGGTCCCCTCTGCGCATTGACGATCCTGCTACAGCAACCCTCGATCTAGTTTGATCTTAGATTGG
131 CGGTCCCCTCTGCGCATTGACGATCCTGCTACAGCAACCCTCGATCCAGTTCGATCTTAGACTAG
23349157 GGATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAACTCAACCCACGAAACGAG
196 GGATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAACTCAACCCACGAAACGAG
* * *
23349222 CATGCAGGCGCTCAGGAGGTTAGAAAGGCCGGCTAGAGAGGCATAATGCGTAAGCCAGGGATTAG
261 CATGCAGGCGCCCAAGAGGTTAGAAAGGCCGGCCAGAGAGGCATAATGCGTAAGCCAGGGATTAG
* *
23349287 CTCGATCCCTTTCTGCGTGCTGCCATTCCCGTTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGC
326 CTCGATCCCTTTCTCCGTGCTGCCATTCCCGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGC
*
23349352 TGGGGATTAGACATGGAATGAACT-CGTATGCCTAAACCAACCCACGAAACGAGCATGCGGGTGC
391 TGGGGATTAGACATGGAATGAACTCCGTATACCTAAACCAACCCACGAAACGAGCATGCGGGTGC
23349416 TCAGTCAGCC-GCAGAGGCAGAATGTGCATGCCGGGGATCGACCCGATCCCCCCTACATGCTGTC
456 TCAGTCAGCCAG-AGAGGCAGAATGTGCATGCCGGGGATCGACCCGATCCCCCCTACATGCTGTC
* *
23349480 GATCCTGTTGCTGGTCCTACTATCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACT
520 GATCCTGTTGCTAGTCCTACTACCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACT
*
23349545 TCGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCAAGCCGGG
585 CCGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCAAGCCGGG
23349610 GATCGACCTGGTCCCCCTCTGTGTGCTGCCGATCTCG
650 GATCGACCTGGTCCCCCTCTGTGTGCTGCCGATCTCG
* * * *
23349647 CTACCACAAC-CTTCGGTCCGACTGGGGCTTAGACATGGAATGAGCTCCTTATGCCTAATCCAAC
1 CTACCACAACAC-TCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAAC
* * *
23349711 CCACGAAACGGGCGTGCGGGCACTCACCC-GACCAGAGAGGTAGAATGTGCAAGCCGGGGATCAA
65 CCACAAAACGGGCGTGCGGGCACTCACCCAG-CCAAAGAGGCAGAATGTGCAAGCCGGGGATCAA
** * * * *
23349775 CCCGGTCCCCTCTGCGTGTTGACGATCCTGCTGCCGTAACCTTCGATCCAGTTCGATCTTAGACT
129 CCCGGTCCCCTCTGCGCATTGACGATCCTGCTACAGCAACCCTCGATCCAGTTCGATCTTAGACT
*
23349840 AGGGATGAACTCCGTATGCTTAGACT-GGGATGAACTCCGTATGCCTAACTCAACCCATGAAACG
194 AGGGATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAACTCAACCCACGAAACG
* * *
23349904 AGCATGCAGGCGCCCAAGAGGTTGGAGAGGCCGGCCGGAGAGGCATAATGCGTAAGCC-GAGGAT
259 AGCATGCAGGCGCCCAAGAGGTTAGAAAGGCCGGCCAGAGAGGCATAATGCGTAAGCCAG-GGAT
* *
23349968 TAGC-CTGAT-CCTCTTCTCCGTGCTGCCGA-TCCCGCTGTCGGTCCTGCTGTCACAACCCTCGG
323 TAGCTC-GATCCCT-TTCTCCGTGCTGCC-ATTCCCGCTGCCGGTCCTGCTGCCACAACCCTCGG
* * * * * *
23350030 TCTGGCTGGGGTTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGCGTGT
385 TCCGGCTGGGGATTAGACATGGAATGAACTCCGTATACCTAAACCAACCCACGAAACGAGCATGC
* * * * *
23350095 GGGTGCTCAGTCAGCCAGAGAGGCAGAATTTGCATGTCGGGGATCTACCCGATCCCCTCTACGTG
450 GGGTGCTCAGTCAGCCAGAGAGGCAGAATGTGCATGCCGGGGATCGACCCGATCCCCCCTACATG
* * * ** *
23350160 TTGTCGATCCTGTTGCTAGTCCTACTACCGTAACCCTTGGTTTGGTCTGATCTTAGACTGGGAAT
515 CTGTCGATCCTGTTGCTAGTCCTACTACCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAAT
23350225 GAACTCCGTATGC
580 GAACTCCGTATGC
23350238 CTAAGCCAAC
Statistics
Matches: 529, Mismatches: 54, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
683 5 0.01
684 173 0.33
685 350 0.66
686 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (686 bp):
CTACCACAACACTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACC
CACAAAACGGGCGTGCGGGCACTCACCCAGCCAAAGAGGCAGAATGTGCAAGCCGGGGATCAACC
CGGTCCCCTCTGCGCATTGACGATCCTGCTACAGCAACCCTCGATCCAGTTCGATCTTAGACTAG
GGATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAACTCAACCCACGAAACGAG
CATGCAGGCGCCCAAGAGGTTAGAAAGGCCGGCCAGAGAGGCATAATGCGTAAGCCAGGGATTAG
CTCGATCCCTTTCTCCGTGCTGCCATTCCCGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGC
TGGGGATTAGACATGGAATGAACTCCGTATACCTAAACCAACCCACGAAACGAGCATGCGGGTGC
TCAGTCAGCCAGAGAGGCAGAATGTGCATGCCGGGGATCGACCCGATCCCCCCTACATGCTGTCG
ATCCTGTTGCTAGTCCTACTACCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTC
CGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCAAGCCGGGG
ATCGACCTGGTCCCCCTCTGTGTGCTGCCGATCTCG
Found at i:23350736 original size:26 final size:26
Alignment explanation
Indices: 23350698--23350750 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23350688 CCGATCCGAT
*
23350698 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23350724 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23350750 C
1 C
23350751 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23351552 original size:172 final size:171
Alignment explanation
Indices: 23351222--23351596 Score: 387
Period size: 172 Copynumber: 2.2 Consensus size: 171
23351212 AAGTCCATAT
* ** * * * *
23351222 GCTTAGACTGGGGATGAACTCTGTTTGCCTAAGTCAACCCATGAAACGAGCGTGCGGGGGCTCAA
1 GCTTAGACTGGGAATGAACTCCATATGCCTTAGCCAACCCATAAAACGAGCGTGCGGGGGCTCAA
* * * * ** **
23351287 CCGACCGAAGAGGCATAATGGACAAGCCGGGGATTAGCCTGGTCCCCCTTTGCGTGCTGTTGATC
66 CCGACCGAAGAGGCAGAATGGACAAGCCGGGGATCAGCCCGATCCCCCACTGCGTGCTGCCGATC
* * *
23351352 CCGCTGCTGGTCCTACTAGCACAACCCTC-AGTCCAATCGGG
131 CCGCTACTGGTCCTACTACCACAACCCTCGA-TCCAATCGGA
* * *
23351393 GCTTAGACAT-GGAATGAACTCCATATGCCTTAGCCAACCCATAAAATGAGCGTGTGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCATATGCCTTAGCCAACCCATAAAACGAGCGTGCGGGGGCTCA
** * * * *
23351457 GTCGACCGGCAGAGGCAGAATGGGCAAGCCGGGGATCGGCCCGATCCCTCACTGCGTGCTGCCGA
65 ACCGACC-GAAGAGGCAGAATGGACAAGCCGGGGATCAGCCCGATCCCCCACTGCGTGCTGCCGA
* * ** * *
23351522 TCCTGCTACTGGTCCTGCTACCGTAACCCTCGATCCAGTCTGA
129 TCCCGCTACTGGTCCTACTACCACAACCCTCGATCCAATCGGA
* *
23351565 TCTTAGACTGGGAATGAACTCTATATG-CTTAG
1 GCTTAGACTGGGAATGAACTCCATATGCCTTAG
23351597 ACTAGGGATG
Statistics
Matches: 165, Mismatches: 35, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
171 63 0.38
172 101 0.61
173 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.22
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCATATGCCTTAGCCAACCCATAAAACGAGCGTGCGGGGGCTCAA
CCGACCGAAGAGGCAGAATGGACAAGCCGGGGATCAGCCCGATCCCCCACTGCGTGCTGCCGATC
CCGCTACTGGTCCTACTACCACAACCCTCGATCCAATCGGA
Found at i:23351630 original size:26 final size:26
Alignment explanation
Indices: 23351566--23351632 Score: 107
Period size: 26 Copynumber: 2.6 Consensus size: 26
23351556 CCAGTCTGAT
* *
23351566 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGGATGAACTCCATATG
*
23351592 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCATATG
23351618 CTTAGACTGGGGATG
1 CTTAGACTGGGGATG
23351633 CCTAAGTCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCATATG
Found at i:23353134 original size:343 final size:343
Alignment explanation
Indices: 23352487--23353139 Score: 735
Period size: 343 Copynumber: 1.9 Consensus size: 343
23352477 TCGGTTCGAT
* *
23352487 CTTAGACTAGGAATGAACTCCATATGCATAAGTCAACCCATGAAATGAGTTTGCGGGCACTGAGC
1 CTTAGACTAGGAATGAACTCCATATGCATAAGTCAACCCACGAAATGAGGTTGCGGGCACTGAGC
* * ** *
23352552 TAGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTACATGCTACTAGTCT
66 TAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCAATCCCCCTCTACATGCTACTAGCCT
* * *
23352617 CGCTGCCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGACTAAACTCCCTATGCCTAAGCCAA
131 CGCTACCACAACCCTCAGTCCAGCTAGGGCGTAGACATGGAATAAACTCCCTATGCCTAAGCCAA
* * * *
23352682 CCCATGAAACAGGTGTACGGGTGCTCAACCGACCGGAGAGGCAGAATGCGCAATCTGAGGATCGG
196 CCCACGAAACAGGTGTACGGGCGCTCAACCGACCGGAGAGGCAGAATACGCAATCTGAGGATCAG
* * * * * *
23352747 CCTGGTCCCCCCTGCATGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGATCCTATCTTAGACT
261 CCCGATCCCCCCTACATGCTACCGATCCCGCTACCACAACCCTCGGTCCGATCCTATCTTAGACT
23352812 GGGAATGAACTTCGCGTG
326 GGGAATGAACTTCGCGTG
* * * * *
23352830 CTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTT-CGGTCATTGAG
1 CTTAGACTAGGAATGAACTCCATATGCATAAGTCAACCCACGAAATGAG-GTTGCGGGCACTGAG
* * * * * * * *
23352894 -TCGGCCGGAGAGGCATAATGCGTAAGTCGGGGATCGACCCAATCCCCCTCTGCGTGCTTCCTA-
65 CT-AGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCAATCCCCCTCTACATGC-TACTAG
* * * * * * **
23352957 CCT-GTTACCATAACCCTCGGTCC-GGTTGGGACGTAGACATGGAATGAACTCTGTATGCCTAAG
128 CCTCGCTACCACAACCCTCAGTCCAGCTAGGG-CGTAGACATGGAATAAACTCCCTATGCCTAAG
* * * * * *
23353020 CCAACCCACGAAA-TGAGTGTACTGGCGCTTAGCCGACTGGAGAGGCAGAATACGCAAGT-TGGG
192 CCAACCCACGAAACAG-GTGTACGGGCGCTCAACCGACCGGAGAGGCAGAATACGCAA-TCTGAG
* * * *
23353083 GATCAGCCCGATCCCCCTCTACGTGCTGCCGGTCCCGCTACCACTACCCTCGGTCCG
255 GATCAGCCCGATCCCCC-CTACATGCTACCGATCCCGCTACCACAACCCTCGGTCCG
23353140 GTTAGGGCCT
Statistics
Matches: 252, Mismatches: 51, Indels: 14
0.79 0.16 0.04
Matches are distributed among these distances:
341 6 0.02
342 108 0.43
343 132 0.52
344 6 0.02
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (343 bp):
CTTAGACTAGGAATGAACTCCATATGCATAAGTCAACCCACGAAATGAGGTTGCGGGCACTGAGC
TAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCAATCCCCCTCTACATGCTACTAGCCT
CGCTACCACAACCCTCAGTCCAGCTAGGGCGTAGACATGGAATAAACTCCCTATGCCTAAGCCAA
CCCACGAAACAGGTGTACGGGCGCTCAACCGACCGGAGAGGCAGAATACGCAATCTGAGGATCAG
CCCGATCCCCCCTACATGCTACCGATCCCGCTACCACAACCCTCGGTCCGATCCTATCTTAGACT
GGGAATGAACTTCGCGTG
Found at i:23353192 original size:159 final size:158
Alignment explanation
Indices: 23352900--23353193 Score: 373
Period size: 159 Copynumber: 1.9 Consensus size: 158
23352890 TGAGTCGGCC
* * * * * * *
23352900 GGAGAGGCATAATGCGTAAGTCGGGGATCGACCCAATCCCCCTCTGCGTGCTTCCTACCTGTTAC
1 GGAGAGGCAGAATACGCAAGTCGGGGATCGACCCAATCCCCCTCTACGTGCTGCCTACCCGCTAC
* ** *
23352965 CATAACCCTCGGTCCGGTTGGGACGTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACG
66 CATAACCCTCGGTCCGGTTGGGACCTAGACATCAAATGAACTCTGTATGCCTAAGCCAACCCAAG
23353030 AAATGAGTGTACTGGCGCTTAGCCGACT
131 AAATGAGTGTACTGGCGCTTAGCCGACT
* *
23353058 GGAGAGGCAGAATACGCAAGTTGGGGATC-AGCCCGATCCCCCTCTACGTGCTGCCGGT-CCCGC
1 GGAGAGGCAGAATACGCAAGTCGGGGATCGA-CCCAATCCCCCTCTACGTGCTGCC--TACCCGC
*
23353121 TACCACT-ACCCTCGGTCCGGTTAGGG-CCTAGGCATCAAATGAACTCCT-TATGCCTAAGCCAA
63 TACCA-TAACCCTCGGTCCGGTT-GGGACCTAGACATCAAATGAACT-CTGTATGCCTAAGCCAA
23353183 CCCAAGAAATG
125 CCCAAGAAATG
23353194 GGCGTGCGGG
Statistics
Matches: 116, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
157 1 0.01
158 46 0.40
159 62 0.53
160 7 0.06
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GGAGAGGCAGAATACGCAAGTCGGGGATCGACCCAATCCCCCTCTACGTGCTGCCTACCCGCTAC
CATAACCCTCGGTCCGGTTGGGACCTAGACATCAAATGAACTCTGTATGCCTAAGCCAACCCAAG
AAATGAGTGTACTGGCGCTTAGCCGACT
Found at i:23353213 original size:159 final size:158
Alignment explanation
Indices: 23352841--23353229 Score: 385
Period size: 158 Copynumber: 2.5 Consensus size: 158
23352831 TTAGACTAGG
* * * * ** * * *
23352841 AATGAACT-TCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGTCATTGAGTCGGCCGGAGA
1 AATGAACTCT-GTATGCCTAAGCCAACCCAAGAAATGAGCGTACGGGCGCTCAGCCGACCGGAGA
* * * * * * *
23352905 GGCATAATGCGTAAGTCGGGGATCGACCCAATCCCCCTCTGCGTGCTTCCTACCTGTTACCATAA
65 GGCAGAATACGCAAGTCGGGGATCGACCCAATCCCCCTCTACGTGCTGCCTACCCGCTACCATAA
* **
23352970 CCCTCGGTCCGGTTGGGACGTAGACATGG
130 CCCTCGGTCCGGTTGGGACCTAGACATCA
* * * * *
23352999 AATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGTACTGGCGCTTAGCCGACTGGAGAG
1 AATGAACTCTGTATGCCTAAGCCAACCCAAGAAATGAGCGTACGGGCGCTCAGCCGACCGGAGAG
* *
23353064 GCAGAATACGCAAGTTGGGGATC-AGCCCGATCCCCCTCTACGTGCTGCCGGT-CCCGCTACCAC
66 GCAGAATACGCAAGTCGGGGATCGA-CCCAATCCCCCTCTACGTGCTGCC--TACCCGCTACCA-
*
23353127 T-ACCCTCGGTCCGGTTAGGG-CCTAGGCATCA
127 TAACCCTCGGTCCGGTT-GGGACCTAGACATCA
* * * * *
23353158 AATGAACTCCT-TATGCCTAAGCCAACCCAAGAAATGGGCGTGCGGGTGCTCAGCCGGCCAGAGA
1 AATGAACT-CTGTATGCCTAAGCCAACCCAAGAAATGAGCGTACGGGCGCTCAGCCGACCGGAGA
23353222 GGCAGAAT
65 GGCAGAAT
23353230 GAGCAAGCCA
Statistics
Matches: 190, Mismatches: 34, Indels: 13
0.80 0.14 0.05
Matches are distributed among these distances:
157 1 0.01
158 92 0.48
159 90 0.47
160 7 0.04
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
AATGAACTCTGTATGCCTAAGCCAACCCAAGAAATGAGCGTACGGGCGCTCAGCCGACCGGAGAG
GCAGAATACGCAAGTCGGGGATCGACCCAATCCCCCTCTACGTGCTGCCTACCCGCTACCATAAC
CCTCGGTCCGGTTGGGACCTAGACATCA
Found at i:23353251 original size:159 final size:159
Alignment explanation
Indices: 23352969--23353258 Score: 361
Period size: 159 Copynumber: 1.8 Consensus size: 159
23352959 TGTTACCATA
* ** *
23352969 ACCCTCGGTCCGGTTGGGACGTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAAT
1 ACCCTCGGTCCGGTTGGGACCTAGACATCAAATGAACTCTGTATGCCTAAGCCAACCCAAGAAAT
* * * ** *** *
23353034 GAGTGTACTGGCGCTTAGCCGACTGGAGAGGCAGAATACGCAAGTTGGGGATCAGCCCGATCCCC
66 GAGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATACGCAAGCCAGAGATCAGCCCGATCCCC
23353099 CTCTACGTGCTGCCGGTCCCGCTACCACT
131 CTCTACGTGCTGCCGGTCCCGCTACCACT
*
23353128 ACCCTCGGTCCGGTTAGGG-CCTAGGCATCAAATGAACTCCT-TATGCCTAAGCCAACCCAAGAA
1 ACCCTCGGTCCGGTT-GGGACCTAGACATCAAATGAACT-CTGTATGCCTAAGCCAACCCAAGAA
* * * * *
23353191 ATGGGCGTGCGGGTGCTCAGCCGGCCAGAGAGGCAGAATGA-GCAAGCCAGAGATCGGCCCGATC
64 ATGAGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAAT-ACGCAAGCCAGAGATCAGCCCGATC
23353255 CCCC
128 CCCC
23353259 CTGCATGCTG
Statistics
Matches: 109, Mismatches: 19, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
159 103 0.94
160 6 0.06
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (159 bp):
ACCCTCGGTCCGGTTGGGACCTAGACATCAAATGAACTCTGTATGCCTAAGCCAACCCAAGAAAT
GAGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATACGCAAGCCAGAGATCAGCCCGATCCCC
CTCTACGTGCTGCCGGTCCCGCTACCACT
Found at i:23353355 original size:26 final size:26
Alignment explanation
Indices: 23353304--23353356 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23353294 CCAGTTCGAT
* * *
23353304 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
23353330 CTTAGACTGGGGATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
23353356 C
1 C
23353357 CCTCAGTCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:23353543 original size:26 final size:26
Alignment explanation
Indices: 23353514--23353566 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23353504 CCGGTCTGAT
*
23353514 CTTAGAC-TGCGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACACCGTATG
*
23353540 CTTAGACATGGAATGAACACTGTATG
1 CTTAGACATGGAATGAACACCGTATG
23353566 C
1 C
23353567 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACACCGTATG
Found at i:23353727 original size:26 final size:26
Alignment explanation
Indices: 23353698--23353750 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23353688 CTGATCCGAT
23353698 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
23353724 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
23353750 C
1 C
23353751 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:23354461 original size:26 final size:26
Alignment explanation
Indices: 23354424--23354475 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23354414 GCTCAAAATA
23354424 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
23354450 TTAGACAT-GGAATGAACTCTGTATGC
1 TTAGAC-TGGGAATGAACTCTGTATGC
23354476 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGC
Found at i:23354786 original size:158 final size:158
Alignment explanation
Indices: 23354448--23354915 Score: 578
Period size: 158 Copynumber: 3.0 Consensus size: 158
23354438 AACTCTGTAT
** * * *
23354448 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCTTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAG
* * * * * *
23354513 CCGATCGGAGAGGCAGAATGTGCAAGCCGAGGATCGGCTCAGTCCCCCTCTGCGTGCTGCCGGTC
66 CCGACCGGAGAGGCAGAATGCGCAAACCGGGGATCGACCCAGT-CCCCTCTGCGTGCTGCCGGTC
* * * * *
23354578 CCACTGCCACAACCATTGGTTCGGCTGGG
130 CCACTGCCACAACCCTCGGTCCGACTAGG
* * * *
23354607 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGAGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAG
* * * * *
23354672 CCGGCCGAAGAGGCATAATGCGCAATCCGGGGATCGACCCCGTCCCCTCTGCGTGCTGCCGGTCC
66 CCGACCGGAGAGGCAGAATGCGCAAACCGGGGATCGACCCAGTCCCCTCTGCGTGCTGCCGGTCC
*
23354737 CGCTGCCACAACCCTCGGTCCGACTAGG
131 CACTGCCACAACCCTCGGTCCGACTAGG
* * *
23354765 GCTTAGACATGGAATGAACTCCCTATGGCTAAGCGAACCCACGAAACGGGCATGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAG
* * * * ** *
23354830 TCGACCGGAGAGGCAGAATGCGTAAACCGGGGATCGACCCGGTCCCC-CTACGTGCTATCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAACCGGGGATCGACCCAGTCCCCTCTGCGTGCTGCCGGTCC
* *
23354894 TACTGCCGCAACCCTCGGTCCG
131 CACTGCCACAACCCTCGGTCCG
23354916 GTCTGATCTT
Statistics
Matches: 264, Mismatches: 45, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
157 32 0.12
158 142 0.54
159 90 0.34
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAACCGGGGATCGACCCAGTCCCCTCTGCGTGCTGCCGGTCC
CACTGCCACAACCCTCGGTCCGACTAGG
Found at i:23354952 original size:26 final size:26
Alignment explanation
Indices: 23354923--23354975 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23354913 CCGGTCTGAT
23354923 CTTAGAC-GGGGAATGAACTCCGTATG
1 CTTAGACTGGGG-ATGAACTCCGTATG
23354949 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
23354975 C
1 C
23354976 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:23356273 original size:26 final size:26
Alignment explanation
Indices: 23356234--23356287 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
23356224 TCTGGCTGAG
*
23356234 GCTTAGACTGGGAATGAACTCCGTAT
1 GCTTAGACTGGGAATAAACTCCGTAT
23356260 GCTTAGACAT-GGAATAAACTCCGTAT
1 GCTTAGAC-TGGGAATAAACTCCGTAT
23356286 GC
1 GC
23356288 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
GCTTAGACTGGGAATAAACTCCGTAT
Found at i:23356562 original size:159 final size:155
Alignment explanation
Indices: 23356333--23356755 Score: 375
Period size: 159 Copynumber: 2.7 Consensus size: 155
23356323 ACCTAGCCGG
* * * * * **
23356333 AGAGGCAGAATGCGTAAGCTGGGGATCGGCCTGGTGCTCCCCTGTGTGCTGTCGATCCTGCTGGT
1 AGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGAT-C-CCCCTGCGTGCTATCGATCCTGCTGCC
* *
23356398 GCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACAA
64 GCAACCCTC-GTCCG-TCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCACAA
* * * * *
23356463 AACAAGCATTCAAGTGCTGAGCTGA-TCGA
127 AACAAGCATGCAAGCGCTCAACCGACT-GA
* * *
23356492 AGAGGCATAATGTGCAAGCTGGGGATCGGCCCGATCCCACTCTGCGTGCTATCGATCCCGCTGCC
1 AGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCC-C-CTGCGTGCTATCGATCCTGCTGCC
* * ** * * ***
23356557 ACAACCCTCGATCCGTTTGGGGCCTAGAAAT-GGAATGAACTCCCTATGCCTAAGTCAACCCGTG
64 GCAACCCTCG-TCCGTCT-GATCTTAG-ACTGGGAATGAACTCCCTATGCCTAAGTCAACCCACA
** * *
23356621 AAACGGGCATGCAGGCGCTCAACCGACTGG
126 AAACAAGCATGCAAGCGCTCAACCGACTGA
* * * * *
23356651 AGATGCAGAATGCGCAAGCTGGGGAACGGTCC-AGTCCCCCCTACGTGCTATCGATCCTGCTGTC
1 AGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGA-T-CCCCCTGCGTGCTATCGATCCTGCTGCC
*
23356715 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
64 GCAACCCTC-GTCC-GTCTGATCTTAGACTGGGAATGAACT
23356756 TCATATGCTT
Statistics
Matches: 208, Mismatches: 45, Indels: 23
0.75 0.16 0.08
Matches are distributed among these distances:
157 4 0.02
158 53 0.25
159 145 0.70
160 6 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (155 bp):
AGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTGCGTGCTATCGATCCTGCTGCCGC
AACCCTCGTCCGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCACAAAACA
AGCATGCAAGCGCTCAACCGACTGA
Found at i:23356773 original size:26 final size:26
Alignment explanation
Indices: 23356737--23356789 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23356727 CCGGTCCGAT
23356737 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
* *
23356763 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
23356789 C
1 C
23356790 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:23357688 original size:26 final size:26
Alignment explanation
Indices: 23357646--23357696 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
23357636 GGTACGATCA
*
23357646 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATAAACTCCATATGCT
*
23357672 TAGACTAGGG-ATAAACTCCGTATGC
1 TAGACT-GGGAATAAACTCCATATGC
23357697 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATAAACTCCATATGCT
Found at i:23358501 original size:159 final size:158
Alignment explanation
Indices: 23358108--23358612 Score: 455
Period size: 158 Copynumber: 3.2 Consensus size: 158
23358098 GTCGATCCCA
* * *
23358108 CTGTCGGTCCTGCTGCCATAACCCTCGATCCGTCTGGGGCTTAGACATGGAATGAACTCCGTATG
1 CTGTCGATCCTGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATG
* * **
23358173 CCTAAGCCAACTCACGAAACGAACGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGC
66 CCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGC
23358238 CAGGGATCGACCCAGTCCCCCCTGCATG
131 CAGGGATCGACCCAGTCCCCCCTGCATG
** * * * ** ** **
23358266 CTGTCGATCCTGCTATCGTAACACTCGGTCTGGTTCGATG-TTAGAC-TAGGAATGAACTTTGTA
1 CTGTCGATCCTGCTGCCATAACCCTCGGTCCGACT-GGGGCTTAGACAT-GGAATGAACTCCGTA
** ** * * * *
23358329 TGCCTAAATCAACCCACGAAAC-AAGCGTTTGGGCGCTGAGCCGGCCGGAGTGGCATAATGCACA
64 TGCCTAAGCCAACCCACGAAACGAA-CGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACA
* ** **
23358393 AGCCAGGGATCGGCCC-GATCTCCCTTTGTGTG
128 AGCCAGGGATCGACCCAG-TC-CCCCCTGCATG
* * *
23358425 CTGTCGATCCCGCTGCCACAACCCCCGGTCCGACTGGGGCTTAGACATGGAAT-AAGCTCCGTAT
1 CTGTCGATCCTGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAA-CTCCGTAT
*** * * * * *
23358489 GCCTAAGCCAACCCACGAAACGGGTGTGTGGGCACTCAACC-AGTCGGAGAGGCAGAATGCGCAA
65 GCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGA-CCGGAGAGGCAGAATGCACAA
* ** *
23358553 GCCGGGGATCGGTCCGGTCCCCCCTGCATG
129 GCCAGGGATCGACCCAGTCCCCCCTGCATG
* * * *
23358583 CTGTTGATCCTACTGCCACAACCCTTGGTC
1 CTGTCGATCCTGCTGCCATAACCCTCGGTC
23358613 TGGTCTGATC
Statistics
Matches: 267, Mismatches: 69, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 4 0.01
158 147 0.55
159 114 0.43
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
CTGTCGATCCTGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATG
CCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGC
CAGGGATCGACCCAGTCCCCCCTGCATG
Found at i:23358651 original size:26 final size:26
Alignment explanation
Indices: 23358622--23358673 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23358612 CTGGTCTGAT
* *
23358622 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23358648 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23358674 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23364901 original size:26 final size:26
Alignment explanation
Indices: 23364865--23364917 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23364855 CCGATCCGAT
*
23364865 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23364891 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23364917 C
1 C
23364918 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23365418 original size:159 final size:158
Alignment explanation
Indices: 23364903--23365552 Score: 604
Period size: 159 Copynumber: 4.1 Consensus size: 158
23364893 TAGACTGGGG
* * * * * * *
23364903 ATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCATACGGGCGTTGAGCAGGCCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGCCGGCCGGAGAGG
* * * * * *
23364968 CATAATGCGCAAGCCGAGGATCGACCC-AGTCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAA
66 CAGAATGCGCAAGCCGGGGATCGACCCGA-TCCCCC-CTGCGTGCTGCCGATCCTGCTGCCACAA
* * * * *
23365032 CCCTCGGTCTGACTGGGGCATAGACATGGA
129 CCCTCGGTCCGGCTAGGGCTTAGACAAGGA
* * *
23365062 ATGAACTCCGTATGCCTAAGCCAACCTA-AGAAACGAGCATGCGGGTGCTCAGTCGGCCGGAGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCACA-AAACGAGCATGCGGGCGCTCAGCCGGCCGGAGAG
* * * * ** * **
23365126 GTAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCCAACTGTCGTAAC
65 GCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAAC
** **
23365191 CCTCGGTCCGGTCTA-ATCTTAGACTGGGA
130 CCTCGGTCCGG-CTAGGGCTTAGACAAGGA
** * * * * * *
23365220 ATGAACTCCGTATGGATAAGTCAACCCACAAAACTAGCGTGCGGGCACTGAGCCGGCCGAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGCCGGCCGGAGAGG
* * * * *
23365285 CATAATGCGTAAGCCGGGGATCGACCCGATCCCCCTTTGCCTGCTGCCGGTCCTGCTGCCACAAC
66 CAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTGCCGATCCTGCTGCCACAAC
*
23365350 CCTTGGTCCGGCTAGGGCTTAGACAAGGA
130 CCTCGGTCCGGCTAGGGCTTAGACAAGGA
* * * * * * *
23365379 ATTAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCGGTGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGCCGGCCGGAGAGG
* * * * *
23365444 CAGAAAGCGCAAGCCGGGGATCGGCTCGGTCCCTCCCTGCGTGCTGCCAATCCTGCTGCCACAAC
66 CAGAATGCGCAAGCCGGGGATCGACCCGATCCC-CCCTGCGTGCTGCCGATCCTGCTGCCACAAC
* * * * ** **
23365509 CTTCGGTTCGGTTCGATCTTAGACTGGGA
130 CCTCGGTCCGGCTAGGGCTTAGACAAGGA
*
23365538 ATGAACTCTGTATGC
1 ATGAACTCCGTATGC
23365553 TTAGACACGG
Statistics
Matches: 390, Mismatches: 94, Indels: 14
0.78 0.19 0.03
Matches are distributed among these distances:
158 126 0.32
159 261 0.67
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGCCGGCCGGAGAGG
CAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAACC
CTCGGTCCGGCTAGGGCTTAGACAAGGA
Found at i:23365466 original size:317 final size:318
Alignment explanation
Indices: 23364891--23365552 Score: 864
Period size: 317 Copynumber: 2.1 Consensus size: 318
23364881 ACTCTGTATG
* * * **
23364891 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCATACGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCATACGGGCACTGAGC
* * *
23364956 AGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCAGTCCCCCTCTACGTGCTGTCGGTCC
66 AGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCAGTCCCCCTCTACCTGCTGCCGGTCC
* * *
23365021 CGCTGCCACAACCCTCGGTCTGACTGGGGCATAGACATGGAATGAACTCCGTATGCCTAAGCCAA
131 CGCTGCCACAACCCTCGGTCCGACTAGGGCATAGACAAGGAATGAACTCCGTATGCCTAAGCCAA
* ** * *
23365086 CCTAAGAAACGAGCATGCGGGTGCTCAGTCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGG
196 CCCAAGAAACGAGCATGCGGGTGCTCAACCGGCCGGAGAGGCAGAAAGCGCAAGCCGGGGATCGG
* * * **
23365151 CTCGATCCC-CCCTGCGTGCTGTCGATCCAACTGTCGTAACCCTCGGTCCGG-TCTAAT
261 CTCGATCCCTCCCTGCGTGCTGCCAATCCAACTGCCACAACCCTCGGTCCGGTTC-AAT
* * *
23365208 CTTAGACTGGGAATGAACTCCGTATGGATAAGTCAACCCACAAAACT-AGCGTGCGGGCACTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAA-TGAGCATACGGGCACTGAG
* * * * *
23365272 CCGGCCGAAGAGGCATAATGCGTAAGCCGGGGATCGACCC-GATCCCCCTTTGCCTGCTGCCGGT
65 CAGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCAG-TCCCCCTCTACCTGCTGCCGGT
* * * * * *
23365336 CCTGCTGCCACAACCCTTGGTCCGGCTAGGGCTTAGACAAGGAATTAACTTCGTATGCCTAAGCC
129 CCCGCTGCCACAACCCTCGGTCCGACTAGGGCATAGACAAGGAATGAACTCCGTATGCCTAAGCC
* * *
23365401 AACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCGGTGAGGCAGAAAGCGCAAGCCGGGGATC
194 AACCCAAGAAACGAGCATGCGGGTGCTCAACCGGCCGGAGAGGCAGAAAGCGCAAGCCGGGGATC
* ** * * *
23365466 GGCTCGGTCCCTCCCTGCGTGCTGCCAATCCTGCTGCCACAACCTTCGGTTCGGTTCGAT
259 GGCTCGATCCCTCCCTGCGTGCTGCCAATCCAACTGCCACAACCCTCGGTCCGGTTCAAT
*
23365526 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
23365553 TTAGACACGG
Statistics
Matches: 295, Mismatches: 46, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
316 1 0.00
317 231 0.78
318 61 0.21
319 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.19
Consensus pattern (318 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCATACGGGCACTGAGC
AGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCAGTCCCCCTCTACCTGCTGCCGGTCC
CGCTGCCACAACCCTCGGTCCGACTAGGGCATAGACAAGGAATGAACTCCGTATGCCTAAGCCAA
CCCAAGAAACGAGCATGCGGGTGCTCAACCGGCCGGAGAGGCAGAAAGCGCAAGCCGGGGATCGG
CTCGATCCCTCCCTGCGTGCTGCCAATCCAACTGCCACAACCCTCGGTCCGGTTCAAT
Found at i:23365564 original size:26 final size:26
Alignment explanation
Indices: 23365526--23365578 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23365516 TCGGTTCGAT
**
23365526 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACACGGAATGAACTTC-GTATG
23365552 CTTAGACACGGAATGAACTTCGTATG
1 CTTAGACACGGAATGAACTTCGTATG
23365578 C
1 C
23365579 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTTCGTATG
Found at i:23365817 original size:502 final size:501
Alignment explanation
Indices: 23365052--23366152 Score: 1404
Period size: 502 Copynumber: 2.2 Consensus size: 501
23365042 GACTGGGGCA
* * * * *
23365052 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTAAGAAACGAGCATGCGGGTGCTCAGTCG
1 TAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCG
* * * * * *
23365117 GCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCCAAC
66 ACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCATGCTATCGATCCAAC
* * * *
23365182 TGTCGTAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGGATAAGTCAACCC
131 TGCCGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCC
* *
23365247 ACAAAACTAGCGTGCGGGCACTGAGCCGGCCGAAGAGGCATAATGCGTAAGCCGGGGATCGACCC
196 ACAAAACTAGCGTGCGAGCACTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCC
* * *
23365312 GATCCCCCTTTGCCTGCTGCCGGTCCTGCTGCCACAACCCTTGGTCCGGCTAGGGCTTAGACAAG
261 GATCCCCCTTTGCATGCTGCCGGTCCTACTGCCACAACCCTTGGTCCAGCTAGGGCTTAGACAAG
* * * * * * *
23365377 GAATTAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCGGTGA
326 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAACCGACCGGAGA
* * *
23365442 GGCAGAAAGCGCAAGCCGGGGATCGG-CTCGGTCCCTCCCTGCGTGCTGCCAATCCTGCTGCCAC
391 GGCAGAAAGCGCAAGCCGAGGATCGGCCT-GGTCCC-CCCTGCGTGCTACCAATCCTACTGCCAC
* * * * **
23365506 AACCTTCGGTTCGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCT
454 AACCCTCGGTCCGGTTCGATCTTAGACTAGGAATCAACTCCCTATGCT
* ** *
23365554 TAGACACGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTAGGCGCTCAGCCG
1 TAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCG
* * * **
23365619 ACTGGAGAGGCAGAATGTGCAAGTCGAGGATCGGCCCGATCCCCCCTGCATGCTATCGATCCTGC
66 ACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCATGCTATCGATCCAAC
* * * *
23365684 TGCCGCAACCCTCAGTCCAGT-TCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
131 TGCCGCAACCCTCAGTCCGGTCT-AATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACC
* ** * * *
23365748 CACGAAA-TGAGCGTGCGAGTGCTGAGCCGGTCGGAGAGGCATAATGCGCAAGTCGGGGATC-AG
195 CACAAAACT-AGCGTGCGAGCACTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGA-
* *
23365811 CCCGATCCCCCTTTGTATGCTGCCGGTCCTACTGCCACAACCCTTGGTCCAGCTGGGGCTTAGAC
258 CCCGATCCCCCTTTGCATGCTGCCGGTCCTACTGCCACAACCCTTGGTCCAGCTAGGGCTTAGAC
* * * *
23365876 ATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGAACGTGCGGGCGCTCGACCGATCGG
323 AAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAACCGACCGG
* * * * * *
23365941 AGAGGCAGAATGCGCAAGCCGAGGATTGGCCTTGTCCCCCCTGCGTGCTACCGATCTTACTGCCG
388 AGAGGCAGAAAGCGCAAGCCGAGGATCGGCCTGGTCCCCCCTGCGTGCTACCAATCCTACTGCCA
*
23366006 CAACCCTCGGTCCGGTTTGATCTTAGACTAGGAATCAACTCCCTATGCT
453 CAACCCTCGGTCCGGTTCGATCTTAGACTAGGAATCAACTCCCTATGCT
** * * * * *
23366055 TAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACAAACGTGCGGGTGCTCAGCCG
1 TAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCG
* *
23366120 ACCAGAGAGGTA-AGATGCGCAAGCC-AGGGATCG
66 ACCGGAGAGGCAGA-ATGCGCAAGCCGA-GGATCG
23366153 AACGGGTGGT
Statistics
Matches: 509, Mismatches: 84, Indels: 13
0.84 0.14 0.02
Matches are distributed among these distances:
500 2 0.00
501 145 0.28
502 360 0.71
503 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (501 bp):
TAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCG
ACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCATGCTATCGATCCAAC
TGCCGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCC
ACAAAACTAGCGTGCGAGCACTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCC
GATCCCCCTTTGCATGCTGCCGGTCCTACTGCCACAACCCTTGGTCCAGCTAGGGCTTAGACAAG
GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAACCGACCGGAGA
GGCAGAAAGCGCAAGCCGAGGATCGGCCTGGTCCCCCCTGCGTGCTACCAATCCTACTGCCACAA
CCCTCGGTCCGGTTCGATCTTAGACTAGGAATCAACTCCCTATGCT
Found at i:23365848 original size:343 final size:344
Alignment explanation
Indices: 23365208--23365852 Score: 747
Period size: 343 Copynumber: 1.9 Consensus size: 344
23365198 CCGGTCTAAT
** * * * * *
23365208 CTTAGACTGGGAATGAACTCCGTATGGATAAGTCAACCCACAAAACTAGCGTGCGGGCACTGAGC
1 CTTAGACACGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAGC
* * * * * * * *
23365273 CGGCCGAAGAGGCATAATGCGTAAGCCGGGGATCGACCCGATCCCCCTTTGCCTGCTGCCGGTCC
66 CGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCATGCTACCGATCC
** * * *
23365338 TGCTGCCACAACCCTTGGTCCGGCTAGGGCTTAGACAAGGAATTAACTTCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCAGTCCAGCTAGAGCTTAGACAAGGAATGAACTTCGTATGCCTAAGCCAA
* * *
23365403 CCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCGGTGAGGCAGAAAGCGCAAGCCGGGGATCGG
196 CCCACGAAACGAGCGTGCGAGTGCTCAACCGGCCGGAGAGGCAGAAAGCGCAAGCCGGGGATCAG
* * * *
23365468 CTCGGTCCCTCCCTGCGTGCTGCCAATCCTGCTGCCACAACCTTCGGTTCGGTTCGATCTTAGAC
261 CCCGATCCCTCCCTGCATGCTGCCAATCCTACTGCCACAACCTTCGGTTCGGTTCGATCTTAGAC
23365533 TGGGAATGAACTCTGTATG
326 TGGGAATGAACTCTGTATG
* * * * *
23365552 CTTAGACACGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTAGGCGCTCAGC
1 CTTAGACACGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAGC
* * * * * *
23365617 CGACTGGAGAGGCAGAATGTGCAAGTCGAGGATCGGCCCGATCCCCC-CTGCATGCTATCGATCC
66 CGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCATGCTACCGATCC
* * * * ** *
23365681 TGCTGCCGCAACCCTCAGTCCAGTTCGATCTTAGACTGGGAATGAAC-TCTGTATGCCTAAGTCA
131 TGCTGCCACAACCCTCAGTCCAGCTAGAGCTTAGACAAGGAATGAACTTC-GTATGCCTAAGCCA
* * * * * * *
23365745 ACCCACGAAATGAGCGTGCGAGTGCTGAGCCGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCA
195 ACCCACGAAACGAGCGTGCGAGTGCTCAACCGGCCGGAGAGGCAGAAAGCGCAAGCCGGGGATCA
* * **
23365810 GCCCGATCCC-CCTTTGTATGCTGCCGGTCCTACTGCCACAACC
260 GCCCGATCCCTCC-CTGCATGCTGCCAATCCTACTGCCACAACC
23365853 CTTGGTCCAG
Statistics
Matches: 243, Mismatches: 56, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
342 4 0.02
343 148 0.61
344 91 0.37
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (344 bp):
CTTAGACACGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCATGCTACCGATCC
TGCTGCCACAACCCTCAGTCCAGCTAGAGCTTAGACAAGGAATGAACTTCGTATGCCTAAGCCAA
CCCACGAAACGAGCGTGCGAGTGCTCAACCGGCCGGAGAGGCAGAAAGCGCAAGCCGGGGATCAG
CCCGATCCCTCCCTGCATGCTGCCAATCCTACTGCCACAACCTTCGGTTCGGTTCGATCTTAGAC
TGGGAATGAACTCTGTATG
Found at i:23365909 original size:159 final size:158
Alignment explanation
Indices: 23365551--23366053 Score: 489
Period size: 158 Copynumber: 3.2 Consensus size: 158
23365541 AACTCTGTAT
* * * * *
23365551 GCTTAGACACGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-TAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGA-GCGCTGA
* * * *
23365615 GCC-GACTGGAGAGGCAGAATGTGCAAGTCGAGGATCGGCCCGATCCCCCCTGCATGCTATCGAT
65 GCCGGTC-GGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGATCCCCCCTGCATGCTACCGAT
* * *
23365679 CCTGCTGCCGCAACCCTCAGTCCAGTTCGA
129 CCTACTGCCACAACCCTCAGTCCAGCTCGA
* * * *
23365709 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAG-TCAACCCACGAAATGAGCGTGCGAGTGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACGAGCGTGCGAGCGCTG
* * * * * *
23365772 AGCCGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTTTGTATGCTGCCGG
64 AGCCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGATCCCCC-CTGCATGCTACCGA
** * *
23365837 TCCTACTGCCACAACCCTTGGTCCAGCTGGG
128 TCCTACTGCCACAACCCTCAGTCCAGCTCGA
* * *
23365868 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGAACGTGCGGGCGCTCGA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGAGCGCT-GA
* * ** * *
23365933 -CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCTTG-TCCCCCCTGCGTGCTACCGAT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCAGCC-CGATCCCCCCTGCATGCTACCGAT
* * * * * *
23365996 CTTACTGCCGCAACCCTCGGTCCGGTTTGA
129 CCTACTGCCACAACCCTCAGTCCAGCTCGA
* * *
23366026 TCTTAGAC-TAGGAATCAACTCCCTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
23366054 TTAGACTGGG
Statistics
Matches: 281, Mismatches: 54, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
157 1 0.00
158 149 0.53
159 126 0.45
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGAGCGCTGAG
CCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGATCCCCCCTGCATGCTACCGATCC
TACTGCCACAACCCTCAGTCCAGCTCGA
Found at i:23366071 original size:26 final size:26
Alignment explanation
Indices: 23366027--23366079 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23366017 CCGGTTTGAT
*
23366027 CTTAGACTAGGAATCAACTCCCTATG
1 CTTAGACTAGGAATCAACTCCATATG
* * *
23366053 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATCAACTCCATATG
23366079 C
1 C
23366080 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCATATG
Found at i:23371453 original size:26 final size:26
Alignment explanation
Indices: 23371415--23371467 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23371405 CCGATCCGAT
*
23371415 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCAAATG
*
23371441 CTTAGACAT-GGAATGAACTCCAAATG
1 CTTAGAC-TGGGAATAAACTCCAAATG
23371467 C
1 C
23371468 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCAAATG
Found at i:23371853 original size:157 final size:157
Alignment explanation
Indices: 23371440--23371939 Score: 458
Period size: 157 Copynumber: 3.2 Consensus size: 157
23371430 AACTCCATAT
* * * * * * *
23371440 GCTTAGACATGGAATGAACTCCAAATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGATCGTGCAGGCGCTCAG
* * *
23371505 CCGACCGGAGAGGCAGAATG-GCAAGCCGGGGATCAGCTCGGTCCCCCCTGCATGCTGTCAATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCATGCTGCCAATCC
** * *
23371569 TGCTACCCCAACCCTCGGTTCGGTCTGG
131 CACTACCCCAACCCTC-ATCCGGTCTGG
* * * *
23371597 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGT-GTG-TGAGCGCT
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGA-TCGTGCAG-GCGCT
* * * * * ** * *
23371659 GAGCTGACTGGAGAGGCATAATGCGTAAGTTGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCA
63 CAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCC-CTGCATGCTGCCA
*
23371724 GTCCCACT-CCCACAACCCT-ATCCGG-CTAGG
127 ATCCCACTACCC-CAACCCTCATCCGGTCT-GG
* * * * *
23371754 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAATGATCATGCAGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGATCGTGCAGGCGCTCAG
* * * * * * *
23371819 CCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCTGGTCCCCCCTACATGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCATGCTGCCAATCC
* * * *
23371884 TACTACCACAACCCTCTGTCCGGTCAGG
131 CACTACCCCAACCCTC-ATCCGGTCTGG
*
23371912 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
23371940 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 58, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
156 27 0.10
157 163 0.60
158 56 0.21
159 24 0.09
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGATCGTGCAGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCATGCTGCCAATCC
CACTACCCCAACCCTCATCCGGTCTGG
Found at i:23371949 original size:26 final size:26
Alignment explanation
Indices: 23371913--23371965 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23371903 CCGGTCAGGT
23371913 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
23371939 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
23371965 C
1 C
23371966 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23372477 original size:147 final size:147
Alignment explanation
Indices: 23372207--23372485 Score: 445
Period size: 147 Copynumber: 1.9 Consensus size: 147
23372197 ACGGTTTGGA
23372207 GATTTTTTAAAATTTTTTTAGAAAGATTATTGACCCCAAATTTAGCAGAGGTAATCCTTGTATTT
1 GATTTTTTAAAATTTTTTTAGAAAGATTATTGACCCCAAATTTAGCAGAGGTAATCCTTGTATTT
* * *
23372272 TTTTTGGCATGCACAAAAATATTCACCTAAAAACTCGAAGTGGAGAAGATTTTGTGACCGTTTGA
66 TTATTGGCATGCAAAAAAATATTCACCTAAAAACTCGAAGTGGAGAAGATTTTATGACCGTTTGA
23372337 AACTTTTTGCAGTTCAG
131 AACTTTTTGCAGTTCAG
* * * **
23372354 GATTTTTTAAAATTTTTTTAGAAAGAGTT-TTGTCCCCAAATTTGGTAGAGGTGGTCCTTGTATT
1 GATTTTTTAAAATTTTTTTAGAAAGA-TTATTGACCCCAAATTTAGCAGAGGTAATCCTTGTATT
*
23372418 TTTATTGGCATGCAAAAAAATATTCAGCTAAAAACTC-AGAGTGGAGAAGATTTTATGACCGTTT
65 TTTATTGGCATGCAAAAAAATATTCACCTAAAAACTCGA-AGTGGAGAAGATTTTATGACCGTTT
23372482 GAAA
129 GAAA
23372486 AAACTATCCC
Statistics
Matches: 121, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
146 1 0.01
147 118 0.98
148 2 0.02
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.37
Consensus pattern (147 bp):
GATTTTTTAAAATTTTTTTAGAAAGATTATTGACCCCAAATTTAGCAGAGGTAATCCTTGTATTT
TTATTGGCATGCAAAAAAATATTCACCTAAAAACTCGAAGTGGAGAAGATTTTATGACCGTTTGA
AACTTTTTGCAGTTCAG
Found at i:23373726 original size:159 final size:158
Alignment explanation
Indices: 23373434--23373729 Score: 344
Period size: 159 Copynumber: 1.9 Consensus size: 158
23373424 GCTTAGACAT
* * * *
23373434 GGAATGAACTTCGTATGCCTAAGCCAACCCAGGAAACGAGCGTGCGGGAGCTCAATCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAGCTCAACCGACCGAAG
* * ** ** * *
23373499 AGGCAGAATGCGCAAGCCGGGGATCAGCCTGGTCACCCCCTACGTGCTTTCGATCCTGCTATCGC
66 AGGCAGAATGCGCAAGCCGAGGATCAGCCCGGT-ACCCCCTACGTGCTACCGATCCCACTACCAC
23373564 AACCCTCTGTCTGGTCCAATCTTATACTG
130 AACCCTCTGTCTGGTCCAATCTTATACTG
* * * * * * *
23373593 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGTTGAGCCGACCGTAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAGCTCAACCGACCGAAG
* * *
23373658 AGGCATAATGCGCAAGCCGAGGATCAGCCCGGT-CCCCCTATTCGTGCTACC-AGTCCCATTGCC
66 AGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTACCCCCTA--CGTGCTACCGA-TCCCACTACC
23373721 ACAACCCTC
128 ACAACCCTC
23373730 GATCTAACTG
Statistics
Matches: 112, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
157 7 0.06
158 1 0.01
159 104 0.93
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAGCTCAACCGACCGAAG
AGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTACCCCCTACGTGCTACCGATCCCACTACCACA
ACCCTCTGTCTGGTCCAATCTTATACTG
Found at i:23375151 original size:26 final size:26
Alignment explanation
Indices: 23375122--23375173 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
23375112 CAATCCGATG
23375122 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
23375148 TTAGACTGGGGATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
23375174 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:23375402 original size:159 final size:159
Alignment explanation
Indices: 23375146--23375769 Score: 499
Period size: 159 Copynumber: 3.9 Consensus size: 159
23375136 AACTCCATAT
* * * * *
23375146 GCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCATG-CGAACGCTC
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGA-GCTC
* * * * * *
23375209 AGCCGACTGGAGAGGCATAATGCT-CAAGCCGGGGATCAACCTGGTCCCTCTCTGCGTGCTGTCA
64 AGCCGACCGGAGAGGCAGAATG-TGCAAGCTGGGGATCAGCCTGGTCCCCCTCTACGTGCTGTCA
23375273 ATCCTGCTACCACAACCCTCAGTCCGACTGGG
128 ATCCTGCTACCACAACCCTCAGTCCGACTGGG
* * * *
23375305 GCTTAGACATGGAATGAACTCCGTATTCTTAAGCCAACCCACGAAACGAGCGTGTGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGAGCTCAG
* * * *
23375370 CTGACCGGAGAGGCAGAATGTGCAAGCTGGGGAT-TGGCTCGGTCCCCCTCTACGTGCTGTCGAT
66 CCGACCGGAGAGGCAGAATGTGCAAGCTGGGGATCAGCCT-GGTCCCCCTCTACGTGCTGTCAAT
* * ** * ***
23375434 CCCGCTATCGTAACCCTCAGTCC-AGTCCAA
130 CCTGCTACCACAACCCTCAGTCCGACT-GGG
* * * * * * *
23375464 TCTTATACTTGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGAGCTCAG
** * * * * ** * *
23375529 CCGACTAGAGAGGCATAATGCGCAAG-TCGGGGATCGGCCCGGTCCCCCTCTTTGTGTTGTCAGT
66 CCGACCGGAGAGGCAGAATGTGCAAGCT-GGGGATCAGCCTGGTCCCCCTCTACGTGCTGTCAAT
* **
23375593 CCTGCTACCACAACCCTCTGTTTGACTGGG
130 CCTGCTACCACAACCCTCAGTCCGACTGGG
* * * * * * * *
23375623 GCTTAGACACGAAATGAACTACC-TATGCCTAAGTCAACCGACAAAATGGGTGTATGGGCA-CTC
1 GCTTAGACATGGAATGAACT-CCATATGCCTAAGTCAACCCACGAAACGAGCGTGTGGG-AGCTC
* * * * * * * * * * *
23375686 AGTCGACCGGAGAGGCAGAATGCGTAAGCCGAGGACCGGCCTGGTCCCCCCCTATGTGCTGCCGA
64 AGCCGACCGGAGAGGCAGAATGTGCAAGCTGGGGATCAGCCTGGTCCCCCTCTACGTGCTGTCAA
* * *
23375751 TCTTACTGCCACAACCCTC
129 TCCTGCTACCACAACCCTC
23375770 GATCTGGTCT
Statistics
Matches: 361, Mismatches: 93, Indels: 22
0.76 0.20 0.05
Matches are distributed among these distances:
158 6 0.02
159 346 0.96
160 9 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGAGCTCAG
CCGACCGGAGAGGCAGAATGTGCAAGCTGGGGATCAGCCTGGTCCCCCTCTACGTGCTGTCAATC
CTGCTACCACAACCCTCAGTCCGACTGGG
Found at i:23375769 original size:318 final size:318
Alignment explanation
Indices: 23375159--23375769 Score: 735
Period size: 318 Copynumber: 1.9 Consensus size: 318
23375149 TAGACTGGGG
* *
23375159 ATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCATGCGAACGCTCAGCCGACTGGAGAGG
1 ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGAACGCTCAGCCGACTAGAGAGG
* * *
23375224 CATAATGCTCAAGCCGGGGATCAACCTGGTCCCTCTCTGCGTGCTGTCAATCCTGCTACCACAAC
66 CATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGTCAATCCTGCTACCACAAC
* * * * *
23375289 CCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATTCTTAAGCCAACCCACGAAACGA
131 CCTCAGTCCGACTGGGGCTTAGACACGAAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGA
* * * * ** *
23375354 GCGTGTGGGAGCTCAGCTGACCGGAGAGGCAGAATGTGCAAGCTGGGGATTGGCTCGGTCCCCCT
196 GCGTATGGGAGCTCAGCTGACCGGAGAGGCAGAATGCGCAAGCCGAGGACCGGCTCGGTCCCCCC
* * * **
23375419 CTACGTGCTGTCGATCCCGCTATCGTAACCCTCAGTCCAGTCCAATCTTATACTTGGA
261 CTACGTGCTGCCGATCCCACTACCACAACCCTCAGTCCAGTCCAATCTTATACTTGGA
* * ** *
23375477 ATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGACTAGAGAGG
1 ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGAACGCTCAGCCGACTAGAGAGG
* ** ** * *
23375542 CATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTTTGTGTTGTCAGTCCTGCTACCACAAC
66 CATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGTCAATCCTGCTACCACAAC
* ** * * *
23375607 CCTCTGTTTGACTGGGGCTTAGACACGAAATGAACTACC-TATGCCTAAGTCAACCGACAAAATG
131 CCTCAGTCCGACTGGGGCTTAGACACGAAATGAACT-CCGTATGCCTAAGCCAACCCACAAAACG
* * *
23375671 GGTGTATGGGCA-CTCAG-TCGACCGGAGAGGCAGAATGCGTAAGCCGAGGACCGGC-CTGGTCC
195 AGCGTATGGG-AGCTCAGCT-GACCGGAGAGGCAGAATGCGCAAGCCGAGGACCGGCTC-GGTCC
* ** *
23375733 CCCCCTATGTGCTGCCGATCTTACTGCCACAACCCTC
257 CCCCCTACGTGCTGCCGATCCCACTACCACAACCCTC
23375770 GATCTGGTCT
Statistics
Matches: 242, Mismatches: 47, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
317 2 0.01
318 237 0.98
319 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (318 bp):
ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGAACGCTCAGCCGACTAGAGAGG
CATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGTCAATCCTGCTACCACAAC
CCTCAGTCCGACTGGGGCTTAGACACGAAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGA
GCGTATGGGAGCTCAGCTGACCGGAGAGGCAGAATGCGCAAGCCGAGGACCGGCTCGGTCCCCCC
CTACGTGCTGCCGATCCCACTACCACAACCCTCAGTCCAGTCCAATCTTATACTTGGA
Found at i:23376546 original size:26 final size:26
Alignment explanation
Indices: 23376507--23376559 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23376497 GGCTCAAACT
23376507 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGTGAATGAACTCCGTATG
*
23376533 CTTAGACATG-GAATGAACTCTGTATG
1 CTTAGAC-TGTGAATGAACTCCGTATG
23376559 C
1 C
23376560 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGTGAATGAACTCCGTATG
Found at i:23383687 original size:26 final size:26
Alignment explanation
Indices: 23383651--23383702 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23383641 TCGATCCAAT
23383651 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
23383677 CTTAGACTGGGGGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23383703 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23383889 original size:26 final size:26
Alignment explanation
Indices: 23383860--23383912 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23383850 CCGGTCCGAT
*
23383860 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
23383886 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
23383912 C
1 C
23383913 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:23385279 original size:26 final size:26
Alignment explanation
Indices: 23385250--23385328 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
23385240 CCGGTCTTAT
23385250 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
23385276 CTTAGACTGGGAATGAAATCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23385302 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23385328 C
1 C
23385329 CAAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23385630 original size:171 final size:171
Alignment explanation
Indices: 23385301--23385670 Score: 408
Period size: 171 Copynumber: 2.2 Consensus size: 171
23385291 AAATCTGTAT
* * * * *
23385301 GCTTAGACTGGGGATGAACTCCGTATGCCAAAGTCAACCCACGAAATGAGCATGCGAGTGCTAAG
1 GCTTAGACTGGGAATGAACTCCGCATGCCAAAGCCAACCCACGAAACGAGCATGCGAGCGCTAAG
*
23385366 CCGGCCGGAGAGGCATAATGCGCAAGACGAGGATCAACCCGGCCCCCCTCTACATGCTGTCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGACGAGGATCAACCCGGCCCCCCTCTACATGCTGTCGATC
* *
23385431 CCGCTGTCGGTCCTGTTGCCACAACCCTCAGTTCGGCTGTG
131 CCGCTGTCGGTCCTGCTACCACAACCCTCAGTTCGGCTGTG
* * * *
23385472 GCTTAGACAT-GGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGCATGCCAAAGCCAACCCACGAAACGAGCATGCGAGCGCTAA
* * * * * * * * *
23385536 GCCGGTCGGAGAGGCAGAATGTGCAAGTCGAGGTTCAGCCCGG-TCCCCTTTGCGTGCTGTCGAT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGACGAGGATCAACCCGGCCCCCCTCTACATGCTGTCGAT
* ** * *
23385600 CCTGCTG-CTGGTCCTTGCTACCGTAACCCTCAGTCCAGTCTGAT-
130 CCCGCTGTC-GGTCC-TGCTACCACAACCCTCAGTTC-GGCTG-TG
* *
23385644 -CTGAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGCATGC
23385671 TTGGACAAGG
Statistics
Matches: 165, Mismatches: 28, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
169 1 0.01
170 29 0.18
171 129 0.78
172 5 0.03
173 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGCATGCCAAAGCCAACCCACGAAACGAGCATGCGAGCGCTAAG
CCGGCCGGAGAGGCAGAATGCGCAAGACGAGGATCAACCCGGCCCCCCTCTACATGCTGTCGATC
CCGCTGTCGGTCCTGCTACCACAACCCTCAGTTCGGCTGTG
Found at i:23386185 original size:26 final size:26
Alignment explanation
Indices: 23386156--23386208 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23386146 CCGGTCCGAT
23386156 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
23386182 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23386208 C
1 C
23386209 CTGAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23386690 original size:26 final size:26
Alignment explanation
Indices: 23386654--23386706 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23386644 CCGATCCGAT
23386654 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
23386680 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
23386706 C
1 C
23386707 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23386780 original size:184 final size:183
Alignment explanation
Indices: 23386568--23387237 Score: 650
Period size: 184 Copynumber: 3.6 Consensus size: 183
23386558 AACTGGTTGG
* *
23386568 AGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCG
1 AGAGGCAGAATGCGCAAG-CCGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCTACCG
* *
23386633 CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAAC
65 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
*
23386698 TCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGAGCGTTGAGCCGACCGA
130 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGTTGAGCCGACCGA
* * * * *
23386752 AGAGGCATAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCCTGCGTGCT-GCTGATCCTGTTGCC
1 AGAGGCAGAATGCGCAAGCCG-GGATCGGCCCGGTCCCCCCTGCGTGCTATC-GATCCTGCTACC
* * * **
23386816 ACAACCCTCAGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAA
64 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAA
* * * *
23386881 CTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGTCGGTCGAAGAGGCCAAC
129 CTCCGTATGCCTAAGTCAACCCACGAAACGA----GCGTGCG---AG-C-GT---TGA-GCCGAC
23386946 C-A
181 CGA
* * * * * *
23386948 GAGAGGTAGAATCCTCAAGCTTGGGATC-GCCCGGTCCCCCTTGCGTGCTACCGATTCC-GCTAC
1 -AGAGGCAGAATGCGCAAGC-CGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGA-TCCTGCTAC
* * * * *
23387011 CGTAACCCTCGGTCTGGTCC-AGTCTTAGGCTGGGAATGAACTCCGTATACTTAGACAT-GGAAT
63 CGCAACCCTCGGTCCGGTCCGA-TCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGAT
** * * * * * ** *
23387074 GAACTGTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGG
126 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGTTGAGCCGACCGA
* * * * * *
23387132 AGAGGCAGAATGCGCAAGCCGGGGTCTGACCCGATCCCTTCCTGCGTGCTGTCGATCCTGCTACT
1 AGAGGCAGAATGCGCAAGCCGGGATC-GGCCCGGTCCC-CCCTGCGTGCTATCGATCCTGCTACC
* * *
23387197 GTAACCCTTGGTCCGGTCCGATCTTAGACTGGAAATGAACT
64 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
23387238 TTGTATGACT
Statistics
Matches: 394, Mismatches: 65, Indels: 53
0.77 0.13 0.10
Matches are distributed among these distances:
182 5 0.01
183 23 0.06
184 153 0.39
185 52 0.13
186 1 0.00
187 1 0.00
188 7 0.02
189 1 0.00
191 2 0.01
192 7 0.02
193 2 0.01
195 1 0.00
196 107 0.27
197 31 0.08
198 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (183 bp):
AGAGGCAGAATGCGCAAGCCGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCTACCGC
AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGTTGAGCCGACCGA
Found at i:23386874 original size:26 final size:26
Alignment explanation
Indices: 23386838--23386890 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23386828 CTGGTTTGAT
23386838 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23386864 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23386890 C
1 C
23386891 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23387539 original size:158 final size:158
Alignment explanation
Indices: 23387060--23387561 Score: 528
Period size: 158 Copynumber: 3.2 Consensus size: 158
23387050 ACTCCGTATA
**
23387060 CTTAGACATGGAATGAACTGTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * *
23387125 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGG-TCTGACCCGATCCCTTCCTGCGTGCTGTCGATC
66 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GGCTCGATCCC-CCCTGCGTGCTATCGATC
* * *
23387189 CTGCTACTGTAACCCTTGGTCCGGTCCGAT
129 CTGCTACCGCAACCCTTGGTCCGATCCGAT
** * * * * *
23387219 CTTAGAC-TGGAAATGAACTTTGTATGACTAAGTCAACCCATGAAATGAGCGTTCGGGCGCTAAG
1 CTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * ** * * *
23387283 CCAGTCAGAGAGGCATAAT-AGCAAGCCGGGGAAAGGCTCGGTCCCCCTCTGCGTGTTATCGGTC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCC-CTGCGTGCTATCGATC
* * * * * * * **
23387347 CCGTTGCCACAACTCTCGGTCCGA-CTGGGG
129 CTGCTACCGCAACCCTTGGTCCGATC-CGAT
* * * *
23387377 CTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * *
23387442 CGGTCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTACCGATCCT
66 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTATCGATCCT
* *
23387507 ACTACCGCAACCCTTGGTCTGATCCGAT
131 GCTACCGCAACCCTTGGTCCGATCCGAT
23387535 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
23387562 TTAGACTAGG
Statistics
Matches: 268, Mismatches: 67, Indels: 17
0.76 0.19 0.05
Matches are distributed among these distances:
157 2 0.01
158 169 0.63
159 97 0.36
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTATCGATCCT
GCTACCGCAACCCTTGGTCCGATCCGAT
Found at i:23387564 original size:26 final size:26
Alignment explanation
Indices: 23387535--23387587 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23387525 CTGATCCGAT
23387535 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
23387561 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
23387587 C
1 C
23387588 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:23388426 original size:26 final size:26
Alignment explanation
Indices: 23388390--23388442 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23388380 CCGGTCCGAT
23388390 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
23388416 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
23388442 C
1 C
23388443 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23389147 original size:26 final size:26
Alignment explanation
Indices: 23389110--23389162 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23389100 GGATCAAACT
* *
23389110 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGCATG
23389136 CTTAGACATGGAATGAACTCCGCATG
1 CTTAGACATGGAATGAACTCCGCATG
23389162 C
1 C
23389163 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGCATG
Found at i:23389703 original size:17 final size:17
Alignment explanation
Indices: 23389681--23389717 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
23389671 CATATACCTA
*
23389681 AGCCAACCCATGAAATG
1 AGCCAACCCATGAAACG
23389698 AGCCAACCCATGAAACG
1 AGCCAACCCATGAAACG
23389715 AGC
1 AGC
23389718 GTGCAGGTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.41, C:0.32, G:0.19, T:0.08
Consensus pattern (17 bp):
AGCCAACCCATGAAACG
Found at i:23390173 original size:26 final size:26
Alignment explanation
Indices: 23390144--23390196 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23390134 CTGGTCCGAT
* *
23390144 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
23390170 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
23390196 C
1 C
23390197 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23390490 original size:343 final size:343
Alignment explanation
Indices: 23389849--23390513 Score: 802
Period size: 343 Copynumber: 1.9 Consensus size: 343
23389839 ATTAAAACCG
* * * *
23389849 TATGCCTAAGTTAACCCATGAAACGAGCGTTCAGGCACTGAGCCGATCGGAGAGGCATAATGCAC
1 TATGCCTAAGTCAACCCATGAAACGAGCGTTCAGGCACTCAACCGATCGGAGAGGCAGAATGCAC
* * ** * * *
23389914 AAGCCGGGGATCAGCCCGGTCCCCCTCTGCATGCTGTCGATCTTGCTGCCACGAGCTTCGGTCCG
66 AAGCCGGGGATCAGCCCCGTCCCCCTCTGCATGCTGCCGATCCCGCTGCCACAACCTTCAGTCCG
* * *
23389979 GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGT
131 ACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTACGGGC
* * **
23390044 GCTCAGCCGGCTAGAGAGGTAGAATGCACAAGCCGAGGATCGACCCAGTCCCCCCTGTGCGCTGT
196 GCTCAACCGGCTAGAAAGACAGAATGCACAAGCCGAGGATCGACCCAGTCCCCCCTGTGCGCTGT
* * **
23390109 CGATCCTACTGCTGCAACCCTCGATCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTA
261 CGATCCTACTACCGCAACCCTCGATCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTA
23390174 GACTGGGGATGAACTCCA
326 GACTGGGGATGAACTCCA
* * *
23390192 TATGCCTAAGTCAACCCATGAAATGAGC-TTACGGGCACTCAACCGATCGGAGAGGCAGAATGCG
1 TATGCCTAAGTCAACCCATGAAACGAGCGTT-CAGGCACTCAACCGATCGGAGAGGCAGAATGCA
* * * * *
23390256 CAAGTCGGGGA-CAGGCCCCGTCCCCTTCTGCGTGCTGCCGGTCCCGTTGCCACAACCTTCAGTC
65 CAAGCCGGGGATCA-GCCCCGTCCCCCTCTGCATGCTGCCGATCCCGCTGCCACAACCTTCAGTC
* ** *
23390320 TGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAC-AGAACAGGCGTGCG
129 CGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA-AACAGGCGTACG
* * ** ** * *
23390384 GGCGGTCAACC-GATCAGAAAGACAGAATGTGCAAGCC-AGGGATCGTTCCGGTCCCTCCTGCT-
193 GGCGCTCAACCGGCT-AGAAAGACAGAATGCACAAGCCGA-GGATCGACCCAGTCCCCCCTG-TG
* * * ** *
23390446 TGCTGTCGATCCTGCTACCGCAACCCTCGGTCCAGTTTGATCTTAGATTGGGAATGAACTTCGTA
255 CGCTGTCGATCCTACTACCGCAACCCTCGATCCAGTCCGATCTTAGATTGGGAATGAACTCCGTA
23390511 TGC
320 TGC
23390514 CTTAATCGAC
Statistics
Matches: 268, Mismatches: 48, Indels: 12
0.82 0.15 0.04
Matches are distributed among these distances:
342 8 0.03
343 259 0.97
344 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (343 bp):
TATGCCTAAGTCAACCCATGAAACGAGCGTTCAGGCACTCAACCGATCGGAGAGGCAGAATGCAC
AAGCCGGGGATCAGCCCCGTCCCCCTCTGCATGCTGCCGATCCCGCTGCCACAACCTTCAGTCCG
ACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTACGGGC
GCTCAACCGGCTAGAAAGACAGAATGCACAAGCCGAGGATCGACCCAGTCCCCCCTGTGCGCTGT
CGATCCTACTACCGCAACCCTCGATCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTA
GACTGGGGATGAACTCCA
Found at i:23390649 original size:158 final size:159
Alignment explanation
Indices: 23390247--23390793 Score: 382
Period size: 158 Copynumber: 3.5 Consensus size: 159
23390237 ATCGGAGAGG
* * *
23390247 CAGAATGCGCAAGTCGGGGA-CAGGCCCCGTCCCCTTCTGCGTGCTGCCGGTCCCGTTGCCACAA
1 CAGAATGCGCAAGTCGGGGATC-GGCCCAGTCCCCCTCTGCGTGCTGTCGGTCCCGTTGCCACAA
* *
23390311 CCTTCAGTCTGACTGGGGCTTAGACATGGAATGAAC-TCTGTATGCC-TAAGCCAACCCACAGAA
65 CC-TCGGTCCGACTGGGGCTTAGACATGGAATGAACTTC-GTATGCCTTAAGCCAACCCACAGAA
* * * *
23390374 CAGGCGTGCGGGCGGTCAACCGATCAGAAAGA
128 CAGGCGTGCAGGCGCTCAACCAACCAGAAAGA
* * * ** * * * * * * * *
23390406 CAGAATGTGCAAGCCAGGGATCGTTCCGGTCCCTC-CTGCTTGCTGTCGATCCTGCTACCGCAAC
1 CAGAATGCGCAAGTCGGGGATCGGCCCAGTCCCCCTCTGCGTGCTGTCGGTCCCGTTGCCACAA-
* * ** * * * *
23390470 CCTCGGTCC-AGTTTGATCTTAGA-TTGGGAATGAACTTCGTATGCCTTAA-TCGACCGAC-GAA
65 CCTCGGTCCGA-CTGGGGCTTAGACAT-GGAATGAACTTCGTATGCCTTAAGCCAACCCACAGAA
* * * ** *
23390531 -ACGAGCGTGCAGGCGCTGAGCCAACCGGAGGGC
128 CA-G-GCGTGCAGGCGCTCAACCAACCAGAAAGA
*
23390564 CATAATGCGCAAGTCGGGGATCGGCCCAGTCCCCCTCTGCGTGCTGTCGGTCCCGTTGCCACAAC
1 CAGAATGCGCAAGTCGGGGATCGGCCCAGTCCCCCTCTGCGTGCTGTCGGTCCCGTTGCCACAAC
* * * *
23390629 CTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCC-TGAGCCAACCCACCA-AACG
66 CTCGGTCCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTTAAGCCAACCCA-CAGAACA
* * * * ** * * *
23390692 GGTGTGCGGGCACTCAGCCGGCCGGATAGG
130 GGCGTGCAGGCGCTCAACCAACCAGAAAGA
* * * * * * * *
23390722 CAGAATACGCAAG-CTGGGGATCGGCCCGGTCCCTC-CTACGTGCTGTCGATCCTGCTGCCGCAA
1 CAGAATGCGCAAGTC-GGGGATCGGCCCAGTCCCCCTCTGCGTGCTGTCGGTCCCGTTGCCACAA
23390785 CCCTCGGTC
65 -CCTCGGTC
23390794 TGGTCCGATC
Statistics
Matches: 292, Mismatches: 79, Indels: 35
0.72 0.19 0.09
Matches are distributed among these distances:
156 1 0.00
157 32 0.11
158 198 0.68
159 60 0.21
160 1 0.00
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.19
Consensus pattern (159 bp):
CAGAATGCGCAAGTCGGGGATCGGCCCAGTCCCCCTCTGCGTGCTGTCGGTCCCGTTGCCACAAC
CTCGGTCCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTTAAGCCAACCCACAGAACAG
GCGTGCAGGCGCTCAACCAACCAGAAAGA
Found at i:23390756 original size:316 final size:317
Alignment explanation
Indices: 23390250--23390829 Score: 806
Period size: 316 Copynumber: 1.8 Consensus size: 317
23390240 GGAGAGGCAG
* *
23390250 AATGCGCAAGTCGGGGACAGGCCCCGTCCCCTTCTGCGTGCTGCCGGTCCCGTTGCCACAACCTT
1 AATGCGCAAGTCGGGGACAGGCCCAGTCCCCCTCTGCGTGCTGCCGGTCCCGTTGCCACAACCTT
* **
23390315 CAGTCTGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAGAACAGGCG
66 CAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAGAACAGGCG
** * ** ** *
23390380 TGCGGGCGGTCAACCGATCAGAAAGACAGAATGTGCAAGCCAGGGATCGTTCCGGTCCCTCCTGC
131 TGCGGGCACTCAACCGACCAGAAAGACAGAATACGCAAGCCAGGGATCGGCCCGGTCCCTCCTAC
* ** * * * *
23390445 TTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCAGTTTGATCTTAGATTGGGAATGAACTTCGT
196 GTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCAGTCCGATCCTAAATTGGGAATAAACTCCGT
23390510 ATGCCTTAATCGACCGACGAAACGAGCGTGCAGGCGCTGAGCCAACCGGAGGGCCAT
261 ATGCCTTAATCGACCGACGAAACGAGCGTGCAGGCGCTGAGCCAACCGGAGGGCCAT
*
23390567 AATGCGCAAGTCGGGGATC-GGCCCAGTCCCCCTCTGCGTGCTGTCGGTCCCGTTGCCACAACC-
1 AATGCGCAAGTCGGGGA-CAGGCCCAGTCCCCCTCTGCGTGCTGCCGGTCCCGTTGCCACAACCT
* * *
23390630 TCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTGAGCCAACCCACCA-AACGGG
65 TCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-CAGAACAGG
* * * * * * **
23390694 TGTGCGGGCACTCAGCCGGCCGGATAGGCAGAATACGCAAGCTGGGGATCGGCCCGGTCCCTCCT
129 CGTGCGGGCACTCAACCGACCAGAAAGACAGAATACGCAAGCCAGGGATCGGCCCGGTCCCTCCT
* **
23390759 ACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCCTAAATTGGGAATAAACTCC
194 ACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCAGTCCGATCCTAAATTGGGAATAAACTCC
23390824 GTATGC
259 GTATGC
23390830 TTAGACTAGG
Statistics
Matches: 226, Mismatches: 35, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
316 165 0.73
317 60 0.27
318 1 0.00
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (317 bp):
AATGCGCAAGTCGGGGACAGGCCCAGTCCCCCTCTGCGTGCTGCCGGTCCCGTTGCCACAACCTT
CAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAGAACAGGCG
TGCGGGCACTCAACCGACCAGAAAGACAGAATACGCAAGCCAGGGATCGGCCCGGTCCCTCCTAC
GTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCAGTCCGATCCTAAATTGGGAATAAACTCCGT
ATGCCTTAATCGACCGACGAAACGAGCGTGCAGGCGCTGAGCCAACCGGAGGGCCAT
Found at i:23391567 original size:26 final size:26
Alignment explanation
Indices: 23391538--23391589 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23391528 GGCTCTAACT
*
23391538 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATAAACTCTGTATG
23391564 CTTAGACATGGAATAAACTCTGTATG
1 CTTAGACATGGAATAAACTCTGTATG
23391590 GCTAAGCCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCTGTATG
Found at i:23391914 original size:26 final size:26
Alignment explanation
Indices: 23391878--23391929 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23391868 TCGGTTCGAT
23391878 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
23391904 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
23391930 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23393007 original size:26 final size:26
Alignment explanation
Indices: 23392969--23393021 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23392959 CTGGTCTGAT
23392969 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
23392995 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
23393021 C
1 C
23393022 CGAAACCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:23393418 original size:888 final size:879
Alignment explanation
Indices: 23391988--23393647 Score: 2087
Period size: 888 Copynumber: 1.9 Consensus size: 879
23391978 AGGCTGTCCG
* *
23391988 GAGAGGTAAAATACGCAAGCCGAGGATCATCCCAGTCCCTCTTACGTGCTATCGATCTTGCTACT
1 GAGAGGTAAAATACGCAAGCCGAGGATCAGCCCAGTCCCTCCTACGTGCTATCGATCTTGCTACT
* ** *
23392053 AGTCTTGCTGTTGCAACCCTCGATTCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAG
66 AGTCCTGCTGCCGCAACCCTCGATTCAGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAG
* * * * * * **
23392118 ACATGGAATAAACTCTGTATGCCTAAGCCAACCCATGAAACGAACGTGCAGGCGCTTAGCCGGTC
131 ACATGGAATAAACTCCGTATGCCGAAACCAACCCACGAAACGAACGTGCAGGCACTCAGCCGACC
* * * * ***
23392183 GGAGAGGCAGAATGTGGAAGCTGAGGACCAGTCGGGTCCCCCCTACGTGCTGTCGATCCTACTGC
196 AGAGAGGCAGAATGCGGAAGCCGAGGACCAGCCCCATCCCCCCTACGTGCTGTCGATCCTACTGC
* * * * *
23392248 CACAAACCTCGGTGTGGTCCAATCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACG
261 CACAAACCTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAAACCACA
* * *
23392313 AAACGAGCATTCGGGCGCTGAACCGACCGAAGAGGCATAATGCGCAAGTCAGGGATCGGCCCGAT
326 AAACGAGCATGCGGGCGCTGAACCGACCGAAGAGGCATAATGCACAACTCAGGGATCGGCCCGAT
* * * * *
23392378 CCCCCTTTGCGTGCTGCCGGTCCCGCTAGCACAACCCTCGATCTGACTGGGGCTTAGACATGGAA
391 CCCCCTCTGCATGCTGCCGATCCCGCTAGCACAACCCTCGATCCGACTGGGGCTTACACATGGAA
** * *
23392443 TGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGATTGAAGAGGC
456 TGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAATCAGCCGATAGAAGAGGC
* * *
23392508 AGAATGCGTAAGCCGAGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATCCTACTACCCCAACCC
521 AGAATGCGCAAGCCGAGGATCGGCCCGGT-CCCCCTACGTGCTGCCGATCCTACTACCCCAACCC
* * * * * *
23392573 TTGGTTCGATCCAATCTTAGACTGCAAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTA
585 TCGATCCGATCCAATCTTAGACTGCAAATGAACTCCGTATGCTTAGACTAGGGACGAACTCCGTA
* * * *
23392638 TGCCTAAGTCAACCCACAAAATGAGTGTGCGGGCGCTCAATCGATCGGAGAGGCCGATCGGAA-A
650 TGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAACCGACCGGAAAGGCCGATC-GAAGA
* * * *
23392702 GGCATAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCGGT
714 GGCAGAATGCACAAGCCAGGGATCAGCCCGATACCCC-CTACGTGCTGTCGATCCCGCTGCCGGT
23392767 CTTACTACCACAACCCTCGGTCCAGTTGGGGCTTAGACATGGAATGAACTCCATATGCTTAAGGC
778 CTTACTACCACAACCCTCGGTCCAGTTGGGGCTTAGACATGGAATGAACTCCATATGCTTAAGGC
23392832 AACCCACGAAATGAGCGAGTGGGCGCTTAGCCGACCA
843 AACCCACGAAATGAGCGAGTGGGCGCTTAGCCGACCA
* * * * *
23392869 GAGAGGTAGAATGCGCAAGCCGGGGATCGGCCC-GATCCCTCCCTACGTGCTATCGATCTTGCTG
1 GAGAGGTAAAATACGCAAGCCGAGGATCAGCCCAG-TCCCT-CCTACGTGCTATCGATCTTGCTA
* * * *
23392933 CTAGTCCTGCTGCCGCAACCCTTG-GTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCT
64 CTAGTCCTGCTGCCGCAACCCTCGATTC-AGTCTGATCTTAGACTAGGAATGAACTCCATATGCT
* * *
23392997 TAGACATGGAATGAACTCCGTATGCCGAAACCAACCCACGAAAC-AAGCGTGCGGGCACTCAGCT
128 TAGACATGGAATAAACTCCGTATGCCGAAACCAACCCACGAAACGAA-CGTGCAGGCACTCAGCC
*
23393061 GACCAGAGAGGCAGAATGCGTG-AGCCGGGGACC-GACCCCATCCCTCCCTACGTGCTGTCGATC
192 GACCAGAGAGGCAGAATGCG-GAAGCCGAGGACCAG-CCCCATCCC-CCCTACGTGCTGTCGATC
* * * *
23393124 GTACTGCCATAACCCTCGGTCTGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTA
254 CTACTGCCACAAACCTCGGTCTGGTCC-A----ATCTTAGACTAGGAATGAACTCCATATGCCTA
* * * * * *
23393189 AGTCAAACCACAAAACGAGCGTGCGGGTGCTGAGCCGACTGGAGAGGCATAATGCACAAACT-GG
314 AGTCAAACCACAAAACGAGCATGCGGGCGCTGAACCGACCGAAGAGGCATAATGCAC-AACTCAG
* * * *
23393253 GGATCGGCCCGATCCCCCTCTGCATGCTGTCGATCTCGCT-GCCACAACCCTCGGTCCGGCTGGG
378 GGATCGGCCCGATCCCCCTCTGCATGCTGCCGATCCCGCTAG-CACAACCCTCGATCCGACTGGG
** *
23393317 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATTAAACGGGCGTGCGGGCAATCAG
442 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAATCAG
* * * * * * **
23393382 CCGGTCAG-AGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCTTATGTGTTGTTGATCC
507 CCGAT-AGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTACGTGCTGCCGATCC
* ** * * * * **
23393446 TGCTGTCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAG
571 TACTACCCCAACCCTCGATCCGATCCAATCTTAGACTGCAAATGAACTCCGTATGCTTAGACTAG
** * *
23393511 GGACGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAACCGGCCGGAAA
636 GGACGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAACCGACCGGAAA
* ** * *
23393576 GGCCGATCGAAGAGGTAGAATGCGTAAGTCAGGGATCGGCCCGATACCCCCTACGTGCTGTCGAT
701 GGCCGATCGAAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGATACCCCCTACGTGCTGTCGAT
*
23393641 CCTGCTG
766 CCCGCTG
23393648 TCGCAACCCT
Statistics
Matches: 651, Mismatches: 112, Indels: 27
0.82 0.14 0.03
Matches are distributed among these distances:
880 1 0.00
881 38 0.06
882 156 0.24
883 42 0.06
884 1 0.00
886 23 0.04
887 161 0.25
888 225 0.35
889 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (879 bp):
GAGAGGTAAAATACGCAAGCCGAGGATCAGCCCAGTCCCTCCTACGTGCTATCGATCTTGCTACT
AGTCCTGCTGCCGCAACCCTCGATTCAGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAG
ACATGGAATAAACTCCGTATGCCGAAACCAACCCACGAAACGAACGTGCAGGCACTCAGCCGACC
AGAGAGGCAGAATGCGGAAGCCGAGGACCAGCCCCATCCCCCCTACGTGCTGTCGATCCTACTGC
CACAAACCTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAAACCACA
AAACGAGCATGCGGGCGCTGAACCGACCGAAGAGGCATAATGCACAACTCAGGGATCGGCCCGAT
CCCCCTCTGCATGCTGCCGATCCCGCTAGCACAACCCTCGATCCGACTGGGGCTTACACATGGAA
TGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAATCAGCCGATAGAAGAGGC
AGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTACGTGCTGCCGATCCTACTACCCCAACCCT
CGATCCGATCCAATCTTAGACTGCAAATGAACTCCGTATGCTTAGACTAGGGACGAACTCCGTAT
GCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAACCGACCGGAAAGGCCGATCGAAGAGG
CAGAATGCACAAGCCAGGGATCAGCCCGATACCCCCTACGTGCTGTCGATCCCGCTGCCGGTCTT
ACTACCACAACCCTCGGTCCAGTTGGGGCTTAGACATGGAATGAACTCCATATGCTTAAGGCAAC
CCACGAAATGAGCGAGTGGGCGCTTAGCCGACCA
Found at i:23393504 original size:26 final size:26
Alignment explanation
Indices: 23393475--23393527 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23393465 CCGGTTCGAT
*
23393475 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ACGAACTCCGTATG
23393501 CTTAGACTAGGGACGAACTCCGTATG
1 CTTAGACTAGGGACGAACTCCGTATG
23393527 C
1 C
23393528 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGGACGAACTCCGTATG
Found at i:23393708 original size:26 final size:26
Alignment explanation
Indices: 23393672--23393724 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23393662 TCGGTCGAAT
23393672 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
23393698 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
23393724 C
1 C
23393725 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23393834 original size:12 final size:12
Alignment explanation
Indices: 23393816--23393858 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
23393806 CCCCTCTGCG
23393816 TGCTACCGAT-C
1 TGCTACCGATCC
23393827 TCGCTACCGATCC
1 T-GCTACCGATCC
*
23393840 TGCTACCGGTCC
1 TGCTACCGATCC
23393852 TGCTACC
1 TGCTACC
23393859 ACAACCCTCG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
11 1 0.03
12 26 0.90
13 2 0.07
ACGTcount: A:0.14, C:0.42, G:0.19, T:0.26
Consensus pattern (12 bp):
TGCTACCGATCC
Found at i:23394345 original size:184 final size:184
Alignment explanation
Indices: 23394030--23394448 Score: 637
Period size: 184 Copynumber: 2.3 Consensus size: 184
23394020 CCTGTTGCCA
* * *
23394030 CAACCCTTAGTCCGGTCTGATCTTGGACTGGGAATGAAC-TCTGTATGCTTAGACATGGAATGAA
1 CAACCCTCAGTCCGATCCGATCTTGGACTGGGAATGAACTTC-GTATGCTTAGACATGGAATGAA
*
23394094 CTCCGTATGCCTAAGCCTACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAA
65 CTCCGTATGCCTAAGCCTACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCCGAGAGGCAGAA
* **
23394159 TGTGCATGCCGAGGACCGA-CCTGATCCCCCCTGCGTTCTATTGATCCTGCTA-CTG
130 TGTGCATGCCGAGGACCGATCC-GATCCCCCCTACGTTCTATTGATCCTAATATC-G
*
23394214 CAACCCTCAGTCTGATCCGATCTTGGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAAC
1 CAACCCTCAGTCCGATCCGATCTTGGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAAC
* * * *
23394279 TCCGTATGCCTAAGCCTACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCCGAGAGGTAGAAT
66 TCCGTATGCCTAAGCCTACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCCGAGAGGCAGAAT
* *
23394344 GTGCATGTCGGGGACCGATCCGATCCCCCCTACGTTCTATTGATCCTAATATCG
131 GTGCATGCCGAGGACCGATCCGATCCCCCCTACGTTCTATTGATCCTAATATCG
* * *
23394398 CAACCCTCAGTCCGATCCTATCTTAGACTGGGAATGAACTCCGTATGCTTA
1 CAACCCTCAGTCCGATCCGATCTTGGACTGGGAATGAACTTCGTATGCTTA
23394449 AGTCAACCCA
Statistics
Matches: 214, Mismatches: 18, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
184 209 0.98
185 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (184 bp):
CAACCCTCAGTCCGATCCGATCTTGGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAAC
TCCGTATGCCTAAGCCTACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCCGAGAGGCAGAAT
GTGCATGCCGAGGACCGATCCGATCCCCCCTACGTTCTATTGATCCTAATATCG
Found at i:23394515 original size:158 final size:156
Alignment explanation
Indices: 23394261--23394761 Score: 515
Period size: 158 Copynumber: 3.2 Consensus size: 156
23394251 ACTTCGTATG
*
23394261 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCTACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-
* * * * * * * **
23394326 CGGCCCGAGAGGTAGAATGTGCATGTCGGGGACCGATCCGATCCCCCCTACGTTCTATTGATCCT
65 CCGACCGAGAGGCAGAATGTGCAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGCTGATCCT
* * *
23394391 AATATCGCAACCCTCAGTCCGATCCTAT
130 AATACCGCAACCCTCAGTTCGGT-CTAT
* * * * *
23394419 CTTAGAC-TGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCTGGCTCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
23394483 CCAACCGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCTGGTC
65 CCGACCG-AGAGGCAGAATGTGCAAGTCGGGGATCGACCCGATCCCCC-CTACGTGCTGCTGATC
* * * **
23394548 C-CACACCACAACCCTCAGTTCGGT-TGGGG
128 CTAATACCGCAACCCTCAGTTCGGTCT--AT
* * *
23394577 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** *
23394642 CGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCCTATACGTGCTGCCGATCCT
66 CGACC-GAGAGGCAGAATGTGCAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGCTGATCCT
* *
23394707 ATTGCCGCAACCCTCAGTTCGGTCTGAT
130 AATACCGCAACCCTCAGTTCGGTCT-AT
* *
23394735 CTTAGAC-TAGGAATGAATTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
23394762 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 58, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 19 0.07
158 240 0.87
159 15 0.05
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGAGAGGCAGAATGTGCAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGCTGATCCTA
ATACCGCAACCCTCAGTTCGGTCTAT
Found at i:23395444 original size:26 final size:26
Alignment explanation
Indices: 23395415--23395467 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
23395405 GGCTCAAACT
23395415 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23395441 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23395467 C
1 C
23395468 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23396016 original size:26 final size:26
Alignment explanation
Indices: 23395965--23396017 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
23395955 CTGGTCTGAT
*
23395965 CTTAGACTGGGAAGGAACTCTATATG
1 CTTAGACTGGGAAGGAACTCCATATG
* *
23395991 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAAGGAACTCCATATG
23396017 C
1 C
23396018 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCATATG
Found at i:23396981 original size:159 final size:158
Alignment explanation
Indices: 23395990--23397080 Score: 689
Period size: 158 Copynumber: 6.9 Consensus size: 158
23395980 AACTCTATAT
* * *
23395990 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TAGCGTGCGGGCGCTCAG
* * * ** * * * * * *
23396055 CCGACCAGAGAGGCAGAATGCGTAAGCCAGGGA-CCAGCCCGATCCC-CCCTGCGTGCTGA-CAA
65 CCGATCGGAGAGGCAAAATGCACAAGCCAGGGATCGA-CCCGGTCCCTCTCTACATGCT-ACCGA
* * ** ***
23396117 TCCTGCTACCGCAACCCTCGGTCCAG-TCCAA
128 TCCTGCTGCCACAACCCTCGGTCTGGCT-GGG
* * ** * * *
23396148 TCTTAGAC-TAGGAATGAACTCCATATGCCTAAGTTAACCCACGAAATAAGCGTTCGGGCTCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAT-AGCGTGCGGGCGCTCA
* * * *
23396212 GCCGACCGGAGAGGCAAAATGCACAAGCC-GAGGATCGGCCTGGTCCCTC-CTGCATGCTACC-A
64 GCCGATCGGAGAGGCAAAATGCACAAGCCAG-GGATCGACCCGGTCCCTCTCTACATGCTACCGA
** * *
23396274 GTCCCACTACCACAACCCTCGGT-TCGACTGGG
128 -TCCTGCTGCCACAACCCTCGGTCT-GGCTGGG
* * * * ** *
23396306 GCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCGATGAAACGGACGTG-GAGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAG-CGTGCG-GGCGCTCA
* * * * * *
23396370 ACCGA-CTGGAGAGGCAGATTACACAAGCCAGGGATCGACCCAGTCCC-C-CATACATGCTACCA
64 GCCGATC-GGAGAGGCAAAATGCACAAGCCAGGGATCGACCCGGTCCCTCTC-TACATGCTACCG
** * * *
23396432 ATCCTGCTGCTGCAACCCTCGATCCGGTCT-GA
127 ATCCTGCTGCCACAACCCTCGGTCTGG-CTGGG
* * * * ** * *
23396464 TCTTAGAC-TGAGAATGAATTCCGTATGCCTAAGTCAATCCATTAAATGAGCGTGCGGGTGCTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAAT-AGCGTGCGGGCGCTCA
* * * *** ** * * * *
23396528 GCCGGTCAGAAAGGTTTAATGCGTAAGTCAGGGATCGACCCGATCCCCCTCTACGTGCTACCGAT
64 GCCGATCGGAGAGGCAAAATGCACAAGCCAGGGATCGACCCGGTCCCTCTCTACATGCTACCGAT
* *
23396593 CCTGCTGCCACAACCCTCGGTCCGGTTGGG
129 CCTGCTGCCACAACCCTCGGTCTGGCTGGG
* * *
23396623 GCTTAGACATGGAATGAACTCCGTATGCCTAAACTAACCCACG----AGCGTGCGGGCGCTCAAC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGCGTGCGGGCGCTCAGC
* * ** * * * * **
23396684 CGGTCGTAGAGGCAAAATGTGCAAGCCAGGGACCGGCCTGGTCCCTCT-TGCATGCTGTCGATCC
66 CGATCGGAGAGGCAAAATGCACAAGCCAGGGATCGACCCGGTCCCTCTCTACATGCTACCGATCC
* * * * * **
23396748 TGCTCCCGCAACCCTCAGTTTGATCT-AA
131 TGCTGCCACAACCCTCGGTCTG-GCTGGG
* * * * * *
23396776 TCTTAGA-TTGAGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACTAGCGTTCGGGCGCTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TAGCGTGCGGGCGCTCA
* ** * * *
23396840 GCCGATCGGAGAGGCATAATGCACAAGCTGGGGATCGCCCCGGTCCCTCTCTACGTGCTACCGGT
64 GCCGATCGGAGAGGCAAAATGCACAAGCCAGGGATCGACCCGGTCCCTCTCTACATGCTACCGAT
* * *
23396905 CCCGCTGCTACAACCGTCGGTCTGGCTGGG
129 CCTGCTGCCACAACCCTCGGTCTGGCTGGG
* * ** *
23396935 GCTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TAGCGTGCGGGCGCTCAG
* * * * * * * * ** *
23397000 TCGATGGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCC-CCCTGCGTGCCGCCAATC
65 CCGATCGGAGAGGCAAAATGCACAAGCCAGGGATCGACCCGGTCCCTCTCTACATGCTACCGATC
*
23397064 CTGCTGCCGCAACCCTC
130 CTGCTGCCACAACCCTC
23397081 AGTCCAGTCT
Statistics
Matches: 707, Mismatches: 190, Indels: 72
0.73 0.20 0.07
Matches are distributed among these distances:
152 2 0.00
153 63 0.09
154 50 0.07
157 11 0.02
158 382 0.54
159 194 0.27
160 5 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCAAAATGCACAAGCCAGGGATCGACCCGGTCCCTCTCTACATGCTACCGATCC
TGCTGCCACAACCCTCGGTCTGGCTGGG
Found at i:23397100 original size:470 final size:470
Alignment explanation
Indices: 23395990--23397113 Score: 1142
Period size: 470 Copynumber: 2.4 Consensus size: 470
23395980 AACTCTATAT
* *
23395990 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
23396055 CCGACCAGAGAGGCAGAATGCGTAAGCCAGGGA-CCAGCCCGATCCCCCCTGCGTGCTGACAATC
66 CCGATCAGAGAGGCAGAATGCGTAAGCCAGGGATCGA-CCCGATCCCCCCTGCGTGCTGCCAATC
* ** **
23396119 CTGCTACCGCAACCCTCGGTCCAGTCCAATCTTAGACTAGGAATGAACTCCATATGCCTAAGTTA
130 CTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAACTA
* * * * *
23396184 ACCCACGAAATAAGCGTTCGGGCTCTGAGCCGACCGGAGAGGCAAAATGCACAAGCCGAGGATCG
195 ACCCACG----AAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAAAATGCACAAGCCGAGGACCG
* **
23396249 GCCTGGTCCCTCCTGCATGCTACCAGTCCCACTACCACAACCCTCGGTTCGACTGGGGCTTAGAA
256 GCCTGGTCCCTCCTGCATGCTACCAGTCCCACTACCACAACCCTCAGTTCGACTGAAGCTTAGAA
* * * * *
23396314 ATGGAATGAACTCCCTATGCCTAAGCCAACCGATGAAACGGACGTGGAGGTGCTCAACCGACTGG
321 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGACGTCGAGGCGCTCAACCGACTGG
* * *
23396379 AGAGGCAGATTACACAAGCCAGGGATCGACCCAGTCCCCCATACATGCTACCAATCCTGCTGCTG
386 AGAGGCAGAATACACAAGCCAGGGATCGACCCAGTCCCCCATACATGCTACCAATCCCGCTGCTA
23396444 CAACCCTCGATCCGGTCTGA
451 CAACCCTCGATCCGGTCTGA
* * * * ** * * *
23396464 TCTTAGAC-TGAGAATGAATTCCGTATGCCTAAGTCAATCCATTAAATGAGCGTGCGGGTGCTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *** * * * *
23396528 GCCGGTCAGAAAGGTTTAATGCGTAAGTCAGGGATCGACCCGATCCCCCTCTACGTGCTACCGAT
65 GCCGATCAGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCC-CTGCGTGCTGCCAAT
* * ** *
23396593 CCTGCTGCCACAACCCTCGGTCCGGT-TGGGGCTTAGAC-ATGGAATGAACTCCGTATGCCTAAA
129 CCTGCTGCCGCAACCCTCGGTCCAGTCT-GATCTTAGACTA-GGAATGAACTCCATATGCCTAAA
** * **
23396656 CTAACCCACG-AGCGTGCGGGCGCTCAACCGGTCGTAGAGGCAAAATGTGCAAGCC-AGGGACCG
192 CTAACCCACGAAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAAAATGCACAAGCCGA-GGACCG
* ** ** * * * *
23396719 GCCTGGTCCCTCTTGCATGCTGTC-GATCCTGCTCCCGCAACCCTCAGTTTGATCT-AATCTTAG
256 GCCTGGTCCCTCCTGCATGCTACCAG-TCCCACTACCACAACCCTCAGTTCGA-CTGAAGCTTAG
* * * * * *
23396782 -ATTGAGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACTAG-CGTTCG-GGCGCTGAGCCG
319 AAATG-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGACG-TCGAGGCGCTCAACCG
* * ** * * * **
23396844 A-TCGGAGAGGCATAATGCACAAGCTGGGGATCGCCCCGGTCCCTCTC-TACGTGCTACCGGTCC
381 ACT-GGAGAGGCAGAATACACAAGCCAGGGATCGACCCAGTCCC-C-CATACATGCTACCAATCC
* * * *
23396907 CGCTGCTACAACCGTCGGTCTGG-CTGGG
443 CGCTGCTACAACCCTCGATCCGGTCT-GA
* * * *
23396935 GCTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * *
23397000 TCGATGGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCCGCCAATCC
66 CCGATCAGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGCCAATCC
* *
23397065 TGCTGCCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTC
131 TGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTC
23397114 TGTTTGCTTA
Statistics
Matches: 517, Mismatches: 115, Indels: 40
0.77 0.17 0.06
Matches are distributed among these distances:
469 6 0.01
470 218 0.42
471 126 0.24
472 3 0.01
473 2 0.00
474 89 0.17
475 73 0.14
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (470 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCAGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGCCAATCC
TGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAACTAA
CCCACGAAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAAAATGCACAAGCCGAGGACCGGCCTG
GTCCCTCCTGCATGCTACCAGTCCCACTACCACAACCCTCAGTTCGACTGAAGCTTAGAAATGGA
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGACGTCGAGGCGCTCAACCGACTGGAGAGG
CAGAATACACAAGCCAGGGATCGACCCAGTCCCCCATACATGCTACCAATCCCGCTGCTACAACC
CTCGATCCGGTCTGA
Found at i:23397844 original size:26 final size:26
Alignment explanation
Indices: 23397815--23397866 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23397805 GCTCAAACTT
23397815 TTAGAC-TGGGAATGAACTCAGTATGC
1 TTAGACAT-GGAATGAACTCAGTATGC
*
23397841 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCAGTATGC
23397867 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCAGTATGC
Found at i:23398183 original size:26 final size:25
Alignment explanation
Indices: 23398154--23398205 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
23398144 TCCGGTTTGA
*
23398154 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACT-CGTATG
23398180 CTTAGACTAGGAATGAACTCGTATG
1 CTTAGACTAGGAATGAACTCGTATG
23398205 C
1 C
23398206 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTAGGAATGAACTCGTATG
Found at i:23400424 original size:26 final size:26
Alignment explanation
Indices: 23400374--23400426 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23400364 CTGGTTCAAT
**
23400374 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
23400400 CTTAGACTAGGGAA-GAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
23400426 C
1 C
23400427 CTACGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:23400481 original size:13 final size:13
Alignment explanation
Indices: 23400463--23400490 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
23400453 CGAGCACTCA
23400463 GCTGGTCGGAGAG
1 GCTGGTCGGAGAG
23400476 GCTGGTCGGAGAG
1 GCTGGTCGGAGAG
23400489 GC
1 GC
23400491 AGAATGCGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.18, G:0.54, T:0.14
Consensus pattern (13 bp):
GCTGGTCGGAGAG
Found at i:23400611 original size:26 final size:26
Alignment explanation
Indices: 23400583--23400665 Score: 123
Period size: 26 Copynumber: 3.2 Consensus size: 26
23400573 CTGGTCTGAT
*
23400583 CTTAGAC-TGGGAATGAACTCTGTATT
1 CTTAGACAT-GGAATGAACTCTGTATG
*
23400609 CTTAGACATGGAATGAACTCTGTACG
1 CTTAGACATGGAATGAACTCTGTATG
*
23400635 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCTGTATG
23400661 CTTAG
1 CTTAG
23400666 GCCAACCCAT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
26 51 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:23401140 original size:26 final size:26
Alignment explanation
Indices: 23401111--23401163 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23401101 CCGGTCCGAT
*
23401111 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
* *
23401137 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
23401163 C
1 C
23401164 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:23401288 original size:184 final size:183
Alignment explanation
Indices: 23400965--23401701 Score: 600
Period size: 184 Copynumber: 3.9 Consensus size: 183
23400955 TTGACATGGA
* * * * * **
23400965 ATGAATTCCCTATGCCTGAGCCAACCAATGAAACGGGCGTGCGGGCAATCAGCCGG-CTGGAGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGTC-GGAGAG
* * * ** * **
23401029 GTAGAATGCGCAAGCTGGGAATCAGCCCAGTCCCTCCTGTATGCTACCGATCCTGCTACCGCAAC
65 GCAGAATGCGCAAGCTGGGGATCAGCCTAGTCCC-CCTGCGTGCTACCGATCCTGTTGTCGCAAC
* * *
23401094 CTTTGGTCCGGTCCGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGG
129 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
* * * *
23401149 ATGAACTCCATATGCCTAAGCCAACCCACGAAACGGGTGTACGGGCGCTCAGCCGATCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGG
* *
23401214 CAGAATGCGTAAG-TCGGGGATCAGCCTAGTCCCCCTTGCGTGTTACCGATCCTGTTGTCGCAAC
66 CAGAATGCGCAAGCT-GGGGATCAGCCTAGTCCCCC-TGCGTGCTACCGATCCTGTTGTCGCAAC
* * * *
23401278 CCTCGGTCCGGTTCGATGTTAGACTAGGAATGCACTCCGTATGCTTAGACTGGGG
129 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
* * * * * * * * * *
23401333 ATAAACTTCGTATGCGTAAGTCAACCCATGAAACGAGCGTGCGTGCGCTCAACTGGTCGAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGG
* * * * *
23401398 CAG-ATGCGCAAGCCGGCGATCAGCCTGGTTCCCCCTGGGTGCTGCCGATCCTGCTGTTGGTCCT
66 CAGAATGCGCAAGCTGGGGATCAGCCTAG-TCCCCCTGCGTGCTACCGAT-C--C---T-GT--T
* * * * *
23401462 GCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGATTGGGAATGAACTTCGTATACTTAGACAT-G
121 G-T--CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGG
*
23401526 GA
182 GG
* * * * * * * *
23401528 ATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGACGCTCAGCAGGCCAGAAAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGG
* * ** * * * *** ** * **
23401593 CAGAATGCGTAAGCTAGGGATCAGCCCGGTCGCCCCCTACATCCTGTTGATATTGCTACCGCAAC
66 CAGAATGCGCAAGCTGGGGATCAGCCTAGT--CCCCCTGCGTGCTACCGATCCTGTTGTCGCAAC
* *
23401658 CCTCGGTCTGGTCCGATCTTAGTCTGGGAATGAACTCCGTATGC
129 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
23401702 CTAAGTCAAC
Statistics
Matches: 436, Mismatches: 96, Indels: 41
0.76 0.17 0.07
Matches are distributed among these distances:
183 34 0.08
184 211 0.48
185 44 0.10
186 1 0.00
188 1 0.00
189 1 0.00
190 3 0.01
191 1 0.00
192 2 0.00
193 1 0.00
195 103 0.24
196 21 0.05
197 13 0.03
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (183 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGG
CAGAATGCGCAAGCTGGGGATCAGCCTAGTCCCCCTGCGTGCTACCGATCCTGTTGTCGCAACCC
TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
Found at i:23402022 original size:27 final size:26
Alignment explanation
Indices: 23401980--23402030 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
23401970 CCGATCTGAT
23401980 CTTAGACTAGGAATGAACTTCCGTAAG
1 CTTAGACTAGGAATGAAC-TCCGTAAG
* *
23402007 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
23402031 TGCATAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTAAG
Found at i:23402378 original size:183 final size:183
Alignment explanation
Indices: 23402189--23402556 Score: 470
Period size: 183 Copynumber: 2.0 Consensus size: 183
23402179 TCTGGCTGGG
* * *
23402189 GCTTAGACATGGAATGAACTCTATATGCCTAAGCGAACCCATGAAACGAGC-GTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGA-CTGTGCGGGCACTCA
* * *
23402253 ACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCTGCATGCTATCGATC
65 ACAGATCGGAGAGGCAGAATGCGCAAGCCGAGGACCAACCCGATCCCCCCTGCATGCTATCGATC
** * * *
23402318 GTGCTGTCGCAACCCTC-GATCGACCCGATCTTAGACTGGGAATGAACTCCGTAT
130 GTGCTACCACAACCCTCAGATCGACCCGATCTGAGACTAGGAATGAACT-CGTAT
* * * *
23402372 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGACTGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGACTGTGCGGGCACTCAA
* * * * * * *
23402437 CAGGTCGGAGAGGTAGAATGCGTAAGCCGAGGACCGACCCGGTCCCCCCTGCGTGCTATCGATCT
66 CAGATCGGAGAGGCAGAATGCGCAAGCCGAGGACCAACCCGATCCCCCCTGCATGCTATCGATCG
* ***
23402502 TGCTACCACAACCCTCAGTTCGATTTGATCTGAGACTAGGAATGAACTCGTAT
131 TGCTACCACAACCCTCAGATCGACCCGATCTGAGACTAGGAATGAACTCGTAT
23402555 GC
1 GC
23402557 CTAAGTCAAC
Statistics
Matches: 157, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
182 1 0.01
183 131 0.83
184 25 0.16
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.20
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGACTGTGCGGGCACTCAA
CAGATCGGAGAGGCAGAATGCGCAAGCCGAGGACCAACCCGATCCCCCCTGCATGCTATCGATCG
TGCTACCACAACCCTCAGATCGACCCGATCTGAGACTAGGAATGAACTCGTAT
Found at i:23402385 original size:26 final size:26
Alignment explanation
Indices: 23402347--23402399 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23402337 TCGACCCGAT
23402347 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23402373 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23402399 C
1 C
23402400 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23402781 original size:330 final size:331
Alignment explanation
Indices: 23402346--23402970 Score: 808
Period size: 330 Copynumber: 1.9 Consensus size: 331
23402336 ATCGACCCGA
*
23402346 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTACGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * **
23402411 CACGAAATGACTGTGTGGGCACTCAGCAGGTCGGAGAGGTAGAATGCGTAAGCCGAGGACC-GAC
66 CACGAAACGACTGTGTGGGCACTCAGCAGGTCGAAGAGGTAGAATGCACAAGCCGAGGACCAG-C
** * * **
23402475 CCGGTCCCCCCTGCGTGCTATCGATCTTGCTACCACAACCCTCAGTTCGATTTGATCTGAGACTA
130 CCAATCCCCCCTACGTGCTATCGATCTGGCTACCACAACCCTCAGTTCGATCCGATCTGAGACTA
* * * **
23402540 GGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGTTGAGCCGACTGGAG
195 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCCTTGAGCCAACCAGAG
*
23402604 AGGCATAATGCACAAGCCAGGGATCGGCCCGATCCCTCTCTGCATGCCCAGCATGTGCACCGTGG
260 AGGCATAATGCACAAGCCAGGGATCAGCCCGATCCCTCTCTGCATGCCCAGCATGTGCACCGTGG
23402669 CTCAAAC
325 CTCAAAC
* * *
23402676 TCTTAGACTGGGAATGAACTATGTATGCTTAGACATGGAATGACCTTCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTACGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * ** *
23402741 CATGGAACGAGC-GTGTGGGCGTTCAGCCA-GTCGAAGAGGTAGAATGCACAAGCCGGGGACCAG
66 CACGAAACGA-CTGTGTGGGCACTCAG-CAGGTCGAAGAGGTAGAATGCACAAGCCGAGGACCAG
* * * * * ** ** * *
23402804 CCCAATCCCTCCTATGTGTTGTCGATCTGGCTGCTGCAACCCTTGGTTCGATCCGATCTTAGAGT
129 CCCAATCCCCCCTACGTGCTATCGATCTGGCTACCACAACCCTCAGTTCGATCCGATCTGAGACT
* * * *
23402869 GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCCTTGAGCCAACCAGA
194 AGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCCTTGAGCCAACCAGA
* * *
23402934 GAGTCATAATGCGCAAGCCAGGGATCAGCCCGGTCCC
259 GAGGCATAATGCACAAGCCAGGGATCAGCCCGATCCC
23402971 CTTCTGTGTG
Statistics
Matches: 248, Mismatches: 43, Indels: 7
0.83 0.14 0.02
Matches are distributed among these distances:
330 166 0.67
331 82 0.33
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (331 bp):
TCTTAGACTGGGAATGAACTACGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAACGACTGTGTGGGCACTCAGCAGGTCGAAGAGGTAGAATGCACAAGCCGAGGACCAGCC
CAATCCCCCCTACGTGCTATCGATCTGGCTACCACAACCCTCAGTTCGATCCGATCTGAGACTAG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCCTTGAGCCAACCAGAGA
GGCATAATGCACAAGCCAGGGATCAGCCCGATCCCTCTCTGCATGCCCAGCATGTGCACCGTGGC
TCAAAC
Found at i:23403229 original size:26 final size:26
Alignment explanation
Indices: 23403180--23403230 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
23403170 GATCCGGTCA
*
23403180 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
* *
23403206 TAGACTGGGGATGAACTTCATATGC
1 TAGACTGGGAATGAACTCCATATGC
23403231 CTAAGTGAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:23403903 original size:158 final size:158
Alignment explanation
Indices: 23403594--23404282 Score: 589
Period size: 158 Copynumber: 4.4 Consensus size: 158
23403584 GCTTATACAT
* * * * * *
23403594 GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTGTTGAGCCGGTCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCCGGTCGGAG
* * * *
23403659 AGGCAGAATGCACAAGCCGGGGATCAGCCCGGTCCCCCCT-C-TGTACTGTCGATCCTACTGTCG
66 AGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCCCCTGCATG--CTGTCGATCCTACTATCG
* *
23403722 CAACCCTCGATCCGGTCTAATCTTAGACTG
129 CAACCCTCGATCCGATCCAATCTTAGACTG
* **
23403752 GGAATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCCGGTCGGAG
* * * * *
23403817 AGGCAGAATGCACAAGTCGGGGACCGGTCTGATCCCCCCTGCATGCTGTCGATCTTGCTATCAG-
66 AGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCCTACTATC-GC
* * * *
23403881 AACGCTTGGTCCGATCCGATCTTAGACTG
130 AACCCTCGATCCGATCCAATCTTAGACTG
*
23403910 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCCGGTCGGAG
* * * * ** ** * *
23403975 AGGCATAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTCTGTATGCTACCGATCCCCCTACCAC
66 AGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCCC-CTGCATGCTGTCGATCCTACTATCGC
* * * * *****
23404040 AAACCTCGGTCTGGTTGGGGCTTAGACAT-
130 AACCCTCGATCCGATCCAATCTTAGAC-TG
* * * * * * * * * * *
23404069 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGATGCTCAGCTGGCCAGAA
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCCGGTCGGAG
* ** * * * * * ** ** * *
23404134 AGACAGAATGCGTAAGCCAGGGATCTGCTCGGT-CCCCCTGTGTGCTACCAATCCTACTACCGCA
66 AGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCCTACTATCGCA
* * **
23404198 ACCCTCGGT-CTAGTCTGATCTTAGACTG
131 ACCCTCGATCCGA-TCCAATCTTAGACTG
* * * *
23404226 GAAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCC
23404283 AACCAAAGAG
Statistics
Matches: 429, Mismatches: 94, Indels: 17
0.79 0.17 0.03
Matches are distributed among these distances:
156 1 0.00
157 87 0.20
158 224 0.52
159 114 0.27
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCCGGTCGGAG
AGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCCTACTATCGCA
ACCCTCGATCCGATCCAATCTTAGACTG
Found at i:23404158 original size:159 final size:156
Alignment explanation
Indices: 23403901--23404316 Score: 406
Period size: 157 Copynumber: 2.6 Consensus size: 156
23403891 CCGATCCGAT
* * * *
23403901 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGC
1 CTTAGACT-GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGATGCTCAGC
* * * * * * *
23403966 CGATCGGAGAGGCATAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTCTGTATGCTACCGATCC
65 CGACCAGAAAGACAGAATGCGCAAGCCGAGGATCGGCCCGAT-CCCC-CTGTATGCTACCAATCC
* * *
23404031 CCCTACCACAAACCTCGGTCTGGT-TGGGG
128 CACTACCACAAACCTCGGTCTAGTCT-GAG
* * * *
23404060 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGATGCTCAGC
1 CTTAGAC-TGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGATGCTCAGC
* * * * * * * *
23404125 TGGCCAGAAAGACAGAATGCGTAAGCC-AGGGATCTGCTCGGTCCCCCTGTGTGCTACCAATCCT
65 CGACCAGAAAGACAGAATGCGCAAGCCGA-GGATCGGCCCGATCCCCCTGTATGCTACCAATCCC
* * *
23404189 ACTACCGCAACCCTCGGTCTAGTCTGAT
129 ACTACCACAAACCTCGGTCTAGTCTGAG
* **
23404217 CTTAGACTGGAAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGG-AATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGATGCTCAGC
* ** * *
23404282 CAACCA-AAGAGGTAGGATGCGCAAGCCGGGGATCG
65 CGACCAGAA-AGACAGAATGCGCAAGCCGAGGATCG
23404317 AACGGGTGGT
Statistics
Matches: 207, Mismatches: 44, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
156 5 0.02
157 111 0.54
158 6 0.03
159 84 0.41
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGATGCTCAGCC
GACCAGAAAGACAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTGTATGCTACCAATCCCAC
TACCACAAACCTCGGTCTAGTCTGAG
Found at i:23404173 original size:316 final size:316
Alignment explanation
Indices: 23403594--23404315 Score: 704
Period size: 316 Copynumber: 2.3 Consensus size: 316
23403584 GCTTATACAT
* * * * *
23403594 GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTGTTGAGCCGGTCAGAG
1 GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCCGATCAGAG
* * * ** *
23403659 AGGCAGAATGCACAAGCCGGGGATCAGCCCGGTCCCCCCTCTGTACTGTCGATCCTACTGTCGCA
66 AGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCCTCTGTACTGTCGATCCCACTACCACA
* * * * *
23403724 ACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCACGAAAC
131 AACCTCGATCCGGTCTAAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
* * * * * * * * * *
23403789 GAGCGTGCGGGCACTGAGCCGGTCGGAGAGGCAGAATGCACAAGTCGGGGACCGGTCTGATCCCC
196 GAGCGTACGGACACTCAGCCGGCCAGAAAGACAGAATGCACAAGCCAGGGACCGCTCTGATCCCC
** * * * * *
23403854 CCTGCATGCTGTCGATCTTGCTATCAG-AACGCTTGGTCCGA-TCCGATCTTAGACTG
261 CCTGCATGCTACCAATCCTACTA-CAGCAACCCTCGGT-CGAGTCCGATCTTAGACTG
* *
23403910 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCCGATCGGAG
1 GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCCGATCAGAG
* * * * *
23403975 AGGCATAATGCGCAAGTCGAGGATCGGCCCGAT-CCCCCTCTGTA-TGCTACCGATCCCCCTACC
66 AGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCCTCTGTACTG-T--CGATCCCACTACC
* * **
23404038 ACAAACCTCGGTCTGGT-TGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCAC
128 ACAAACCTCGATCCGGTCT-AAGCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * ** * ** *
23404101 GAAATGGGCGTACGGATGCTCAGCTGGCCAGAAAGACAGAATGCGTAAGCCAGGGATCTGCTC-G
191 GAAACGAGCGTACGGACACTCAGCCGGCCAGAAAGACAGAATGCACAAGCCAGGGA-CCGCTCTG
* ** * * *
23404165 GT-CCCCCTGTGTGCTACCAATCCTACTACCGCAACCCTCGGTCTAGTCTGATCTTAGACTG
255 ATCCCCCCTGCATGCTACCAATCCTACTACAGCAACCCTCGGTCGAGTCCGATCTTAGACTG
* * * * * *
23404226 GAAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAACCAAAG
1 GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCCGATCAGAG
* * * *
23404291 AGGTAGGATGCGCAAGCCGGGGATC
66 AGGCAGAATGCACAAGCCGAGGATC
23404316 GAACGGGTGG
Statistics
Matches: 327, Mismatches: 71, Indels: 16
0.79 0.17 0.04
Matches are distributed among these distances:
314 2 0.01
315 16 0.05
316 204 0.62
317 100 0.31
318 5 0.02
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (316 bp):
GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCCGATCAGAG
AGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCCTCTGTACTGTCGATCCCACTACCACA
AACCTCGATCCGGTCTAAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
GAGCGTACGGACACTCAGCCGGCCAGAAAGACAGAATGCACAAGCCAGGGACCGCTCTGATCCCC
CCTGCATGCTACCAATCCTACTACAGCAACCCTCGGTCGAGTCCGATCTTAGACTG
Found at i:23404944 original size:26 final size:26
Alignment explanation
Indices: 23404915--23404967 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23404905 GGCTTAAAAT
23404915 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
23404941 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
23404967 C
1 C
23404968 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:23405818 original size:26 final size:26
Alignment explanation
Indices: 23405769--23405824 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
23405759 CTGGTCCGAT
* *
23405769 CTTAGACTGGGAATGAACTTCATACG
1 CTTAGACTGGGAATGAAATGCATACG
*
23405795 CTTAGACAT-GGAATGAAATGCATATG
1 CTTAGAC-TGGGAATGAAATGCATACG
23405821 CTTA
1 CTTA
23405825 AGCCAACCCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATGCATACG
Found at i:23406096 original size:159 final size:158
Alignment explanation
Indices: 23405795--23406289 Score: 521
Period size: 159 Copynumber: 3.1 Consensus size: 158
23405785 ACTTCATACG
* * * * *
23405795 CTTAGACATGGAATGAAATGCATATGCTTAAGCCAACCCCACGAAACGAGCGTACGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAA-CCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
23405860 TCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGACCGGTCCGGTCCCTCTTGTGTGCTGTTGATCC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTCCGGTCCCCCTTGCGTGCTGTCGATCC
* *
23405925 TGCTGCTGCAACCCTCGATCTGGTACGAT
130 TGCTGCCGCAACCCTCGATCTAGTACGAT
* * *
23405954 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
23406018 CCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATTGGTTCGGTCCCCCTTTGCGTGCTGTCGGTC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTCCGGTCCCCC-TTGCGTGCTGTCGATC
* * * * **
23406083 CCGCTGCCACAACCCTCGGT-TCG-ACTGGGG
129 CTGCTGCCGCAACCCTCGATCTAGTAC--GAT
* * *
23406113 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
23406178 CGGCCGGAGAGGCAGAATACGCAAGTCGGGGATCGGCCCGATCCCCCCTGCATGCTATCGATCCT
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTCCGGTCCCCCTTGCGTGCTGTCGATCCT
* * * *
23406243 GCTGTCGTAACCCTCGATCCAGTCCGAT
131 GCTGCCGCAACCCTCGATCTAGTACGAT
*
23406271 CTTAGGC-TGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
23406290 TTGTATGCTT
Statistics
Matches: 272, Mismatches: 56, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 110 0.40
159 157 0.58
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTCCGGTCCCCCTTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGATCTAGTACGAT
Found at i:23407705 original size:26 final size:26
Alignment explanation
Indices: 23407676--23407727 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23407666 CCGATCTGAT
23407676 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
23407702 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23407728 TTTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23408181 original size:158 final size:157
Alignment explanation
Indices: 23407702--23408195 Score: 455
Period size: 158 Copynumber: 3.1 Consensus size: 157
23407692 ACTCCGTATG
* ** * * * *
23407702 CTTAGACAT-GGAATGAACTTCGTATGTTTAAGCCAACCCATGAAACGAGTGTGCAGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
23407766 CCGGGCGAAGAGGTAGAATGCGCAAG-CTGGGGA-CCGACCAGATCCTCCCCTGCGTACTGTCGA
65 CCGGCCG-AGAGGTAGAATGCGCAAGCCT-GGGATCAG-CCCGATCC-CCCCTGCGTGCTGTCGA
* * * *
23407829 TCTTCCTACCGCAACCCTCGG-TCCGATCTGAT
126 TCTTGCTGCCACAACCCTCGGTTCAGATC-GAT
* *
23407861 CTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
1 CTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
23407926 CGACCGAGAGGTATAATGCGCAAGCC-GAGGATCGGCTC-AGTCCCCCTCTGTGTGCTG-CAGGT
66 CGGCCGAGAGGTAGAATGCGCAAGCCTG-GGATCAGCCCGA-TCCCCC-CTGCGTGCTGTC-GAT
* * * * * **
23407988 CTTGCTGCCACAACCCTTGATCCAGCTAGGG
127 CTTGCTGCCACAACCCTCGGTTCAGATCGAT
* * * * *
23408019 CTTAGACAT-GGAATGAACTCCCTACGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
23408083 CCGGCCAGAGAGGCAGAATGCGTAAGCCTGGGATAAGCCCGATCCCCCCTGCGTGCTGTCGATCC
65 CCGGCC-GAGAGGTAGAATGCGCAAGCCTGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCT
* *
23408148 TGCTGCCACAACCCTCGGTTCGGTTCGAT
129 TGCTGCCACAACCCTCGGTTCAGATCGAT
23408177 CTTAGACTGGGAATGAACT
1 CTTAGACTGGGAATGAACT
23408196 ACGTATGCTT
Statistics
Matches: 267, Mismatches: 54, Indels: 29
0.76 0.15 0.08
Matches are distributed among these distances:
157 7 0.03
158 161 0.60
159 97 0.36
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGAGAGGTAGAATGCGCAAGCCTGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCTTG
CTGCCACAACCCTCGGTTCAGATCGAT
Found at i:23408213 original size:26 final size:26
Alignment explanation
Indices: 23408177--23408229 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23408167 TCGGTTCGAT
23408177 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* * *
23408203 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
23408229 C
1 C
23408230 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:23409655 original size:26 final size:26
Alignment explanation
Indices: 23409617--23409669 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23409607 CCTATCTGAA
23409617 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
23409643 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
23409669 C
1 C
23409670 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23410006 original size:159 final size:153
Alignment explanation
Indices: 23409650--23410144 Score: 465
Period size: 158 Copynumber: 3.1 Consensus size: 153
23409640 ATGCTTAGAC
* * *
23409650 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGTGCTCAGCCGGCTGG
1 ATGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCAGGCGCTCAGCC-GCCGG
* * * *
23409715 ACAGGCAGAATGCGCAAGCTGGGCA-CCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACC
64 AGAGGCAGAATGCGCAAGCCGGG-ATCGGA-CCGGTCCCCCCTGCGTGCTGTCGATCCCGCTACC
* *
23409779 GCAACCCTCAGTCCAGTCCAATCTTAG
127 ACAACCCTCAGTCCAGTCCAAGCTTAG
* * * *
23409806 ACTGGGAATGAACTCCGTATGTCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGCCGATC
1 A-T-GGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCAGGCGCTCAGCCG-CC
* *
23409871 GGAGAGGCATAATGCGCAAGCCAGGGATCGGACCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTA
62 GGAGAGGCAGAATGCGCAAGCC-GGGATCGGACCGGTCCCCC-CTGCGTGCTGTCGATCCCGCTA
* * * * ***
23409936 GCACAATCCT-TGATTCAG-CTGGGGCTTAAAG
125 CCACAACCCTCAG-TCCAGTC-CAAGCTT--AG
* * * *
23409967 ATGGAATGAACTCCCTATGCCTAAGCGAACCCATGAAACGGGCGTGCGGGCGCTCAGTCGGCCGG
1 ATGGAATGAACTCCGTATGCCTAAGC-AACCCATGAAACGAGCGTGCAGGCGCTCAG-CCGCCGG
* * * * *
23410032 AGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTATCG
64 AGAGGCAGAATGCGCAAGCCG-GGATCGGACCGGTCCCCCCTGCGTGCTGTCGATCCCGCTACCA
* * * * *
23410097 CAACCCTCGGTCCTGTCCGATCTGAG
128 CAACCCTCAGTCCAGTCCAAGCTTAG
*
23410123 ACTGGGAATGAACTCTGTATGC
1 A-T-GGAATGAACTCCGTATGC
23410145 TTATACTGGG
Statistics
Matches: 274, Mismatches: 48, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
156 4 0.01
157 3 0.01
158 133 0.49
159 128 0.47
160 3 0.01
161 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (153 bp):
ATGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGCCGGAG
AGGCAGAATGCGCAAGCCGGGATCGGACCGGTCCCCCCTGCGTGCTGTCGATCCCGCTACCACAA
CCCTCAGTCCAGTCCAAGCTTAG
Found at i:23411588 original size:26 final size:25
Alignment explanation
Indices: 23411550--23411598 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 25
23411540 GGCTCAAAAT
23411550 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAAC-CCGTATG
23411576 CTTAGAC-ATGGAATGAACCCGTA
1 CTTAGACTA-GGAATGAACCCGTA
23411599 CGCCTAAGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.24
Consensus pattern (25 bp):
CTTAGACTAGGAATGAACCCGTATG
Found at i:23411868 original size:160 final size:159
Alignment explanation
Indices: 23411576--23411868 Score: 367
Period size: 160 Copynumber: 1.8 Consensus size: 159
23411566 ACTCCGTATG
* * *
23411576 CTTAGACATGGAATGAACCCGTACGCCTAAGCCAACCCATGAAAAGAGCATATGGGTGCTCAGCC
1 CTTAGACATGGAATGAACCCGTACGCATAAGCCAACCCATGAAAAGAGCATACGGGCGCTCAGCC
* * * *
23411641 AATCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGACCCGCCCTGCATGCTGTCGATCCT
66 AACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGACCCGCCCTGCATGCTGCCGATCCT
23411706 GCTATTTGCAACCCTCGGTCTGATCCAAT
131 GCTATTTGCAACCCTCGGTCTGATCCAAT
* * * * * *
23411735 CTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAAAGAGCGTGCGGGCGTTGAG
1 CTTAGACAT-GGAATGAAC-CCGTACGCATAAGCCAACCCATGAAAAGAGCATACGGGCGCTCAG
* * * * *
23411799 CCGACCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCC-CCTCTGCGTGCTGCC-AG
64 CCAACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGACCCGCC-CTGCATGCTGCCGA-
23411862 TCCTGCT
127 TCCTGCT
23411869 GCCACAACCC
Statistics
Matches: 112, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
158 1 0.01
159 19 0.17
160 92 0.82
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACCCGTACGCATAAGCCAACCCATGAAAAGAGCATACGGGCGCTCAGCC
AACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGACCCGCCCTGCATGCTGCCGATCCT
GCTATTTGCAACCCTCGGTCTGATCCAAT
Found at i:23412209 original size:184 final size:184
Alignment explanation
Indices: 23411894--23412256 Score: 417
Period size: 184 Copynumber: 2.0 Consensus size: 184
23411884 CTGGATGGGG
* * * *
23411894 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGGAATGGGCGTGCATGCGCTCAAC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCATGCGCTCAAC
* * * *
23411959 CGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACTCGATCCCCCTTACGTGCTATCGATCCT
66 CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTTACGTGCTACCAATCCT
* * *
23412024 ACTGCCGCAACCCTC-GATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATT
131 ACTGCCGCAACCCTCAG-TCCGATCTAATCTTAAACTAGGAATGAACTCCGTATT
* * *
23412078 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCATGCGTTCAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCATGCGCTCAA
* * * * * * * ** *
23412142 CCGAGCGGAGAGGTAGAATGTGCAAGCC-AGGGATTGGCCCGGTCCCCTTTGTGTGCTGCCAATC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCGATCCCCCTTACGTGCTACCAATC
** * * *
23412206 CTACTGGTGCATCCCTCAGTCCGATCTAATCTTAAACTGGGGATGAACTCC
129 CTACTGCCGCAACCCTCAGTCCGATCTAATCTTAAACTAGGAATGAACTCC
23412257 ATATGCCTAA
Statistics
Matches: 147, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
183 2 0.01
184 144 0.98
185 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.22
Consensus pattern (184 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCATGCGCTCAAC
CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTTACGTGCTACCAATCCT
ACTGCCGCAACCCTCAGTCCGATCTAATCTTAAACTAGGAATGAACTCCGTATT
Found at i:23414128 original size:159 final size:159
Alignment explanation
Indices: 23413965--23414329 Score: 384
Period size: 159 Copynumber: 2.3 Consensus size: 159
23413955 CCTACAGCAG
* *
23413965 CAACCGTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCA-TAAGTCAACCCATGA
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCACTAAGCCAACCCATGA
* * * * * * * * *
23414029 AACGAGCGTGCATGTGTTGC-GTC-GATCAAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGG
66 AACGAGCGTGCAGGTGCT-CAGCCAG-CCAAAGAGGCAGAATGCACAAGCCGGGGACCGGCCCGA
*
23414092 T-ACCCCTTTACGTGCTGCCCGTCCCGCTGCCA
129 TCACCCC--TACGTGCTGCCCGTCCCACTGCCA
** * *
23414124 CAACCCTCGGTCTGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTAT-AACTAAGCCAACCCAT
1 CAACCCTCGGTCTGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCACTAAGCCAACCCAT
* * * *
23414186 GAAATGGGCGTGCAGGTGCTCAGCCAGCCGAAGAGGCAGAATGCACAAGCCTGGGACCGGCCCGA
64 GAAACGAGCGTGCAGGTGCTCAGCCAGCCAAAGAGGCAGAATGCACAAGCCGGGGACCGGCCCGA
* * * * *
23414251 TCACCCCTGCGTGTTGTCGGTCCTACTGCCA
129 TCACCCCTACGTGCTGCCCGTCCCACTGCCA
* *
23414282 CAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
23414330 TTAGACTGGG
Statistics
Matches: 166, Mismatches: 31, Indels: 18
0.77 0.14 0.08
Matches are distributed among these distances:
157 1 0.01
158 59 0.36
159 99 0.60
160 7 0.04
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (159 bp):
CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCACTAAGCCAACCCATGA
AACGAGCGTGCAGGTGCTCAGCCAGCCAAAGAGGCAGAATGCACAAGCCGGGGACCGGCCCGATC
ACCCCTACGTGCTGCCCGTCCCACTGCCA
Found at i:23414332 original size:26 final size:26
Alignment explanation
Indices: 23414303--23414355 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23414293 CTGATCCGAT
23414303 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
23414329 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23414355 C
1 C
23414356 CTATGTCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23415565 original size:26 final size:26
Alignment explanation
Indices: 23415536--23415588 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23415526 TCGGTCTGAT
*
23415536 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
23415562 CTTAGACATTGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23415588 C
1 C
23415589 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23415672 original size:362 final size:348
Alignment explanation
Indices: 23414859--23415688 Score: 883
Period size: 362 Copynumber: 2.4 Consensus size: 348
23414849 AGTCCGATCT
* ** * *
23414859 TAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAGACA
1 TAGACTACGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGACA
** * *
23414924 GTGGGAGAGGCATAATGCACAAGCCGGGGAACGACTCGGT--CCCTCT-C-TGCATG-C--TGCC
66 GCCGGAGAGGCATAATGCACAAGCCGGGGATCGCCT-GGTCCCCCTCTGCGTGC-TGTCGATGCC
* * *
23414982 TGTCCGACTGCCACAACCCTTGGTCCGACTGGGGCATAGACATGGAATGAACTCCCTATGCCTAA
129 GGTCCGACTGCCACAACCCTAGGTCAGACTGGGGCATAGACATGGAATGAACTCCCTATGCCTAA
* * * *
23415047 GCCAACCCACGAAACGGGCGTGCGAGTGCTCAGCTGACCGAAAAGGCAGAATGCGCAAGCCAGGG
194 GCCAACCCACAAAACGAGCGTGCGAGCGCTCAGCCGACCGAAAAGGCAGAATGCGCAAGCCAGGG
* * *
23415112 ATCGGCCTAGTCCCCTCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCAGTCTGGTCAGATCTT
259 ATCGGCCCAGTCCCCCCTGCATGCTGTCGATCCTGCTACCGTAACCCTCAGTCTGGTCAGATCTT
23415177 AGACTGGGAATGAACTCTGTATGCC
324 AGACTGGGAATGAACTCTGTATGCC
* * * * * * *
23415202 TAGACTACGGATGAACTGCGTATGCCTAATTCAACCCATGAAACGAGTGTGTGGGTGCTCAGTC-
1 TAGACTACGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGACA
* * * *
23415266 GACCGGAGATGCGTAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATGCC
66 G-CCGGAGAGGCATAATGCACAAGCCGGGGATCG-CCTGGTCCCCCTCTGCGTGCTGTCGATGCC
* * * *
23415331 GGTCCTACTGGCACAACCCTAGGTTCAG-CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
129 GGTCCGACTGCCACAACCCTAGG-TCAGACTGGGGCATAGACATGGAATGAACTCCCTATGCCTA
* * * * * * * * *
23415395 AGCCAACCCACAAAACTAGCGTGTGGGCGCTCAGCCGACCGGAGAGGTAGAATGTGCAAGTCGGG
193 AGCCAACCCACAAAACGAGCGTGCGAGCGCTCAGCCGACCGAAAAGGCAGAATGCGCAAGCCAGG
*
23415460 GATCGGCCCAGTCCCCCCCTGCATGCTGTCGATCTTGCTGCTGGTCCTGCTGTCGCAACCCTCGA
258 GATCGGCCCAGT-CCCCCCTGCATGCTGTCGATC---CTGC---TAC--C-GT---AACCCTC-A
* * *
23415525 TTC-GGTCTGATCTTAGACTGGGAATGAACTCTGTATGCT
309 GTCTGGTCAGATCTTAGACTGGGAATGAACTCTGTATGCC
* * * *
23415564 TAGAC-ATTGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTCAGCC
1 TAGACTA-CGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGAC
* * ** *
23415628 AGCCGGAGAGGCAAAATCCGTAAGTCGGGGATCAGCCTGGTCCCCCT-TGCGTGCTGTCGAT
65 AGCCGGAGAGGCATAATGCACAAGCCGGGGATC-GCCTGGTCCCCCTCTGCGTGCTGTCGAT
23415689 CCTACTATCA
Statistics
Matches: 394, Mismatches: 66, Indels: 36
0.79 0.13 0.07
Matches are distributed among these distances:
342 1 0.00
343 81 0.21
344 1 0.00
345 6 0.02
346 3 0.01
347 4 0.01
349 120 0.30
350 22 0.06
353 4 0.01
356 2 0.01
358 1 0.00
359 2 0.01
361 15 0.04
362 127 0.32
363 5 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (348 bp):
TAGACTACGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGACA
GCCGGAGAGGCATAATGCACAAGCCGGGGATCGCCTGGTCCCCCTCTGCGTGCTGTCGATGCCGG
TCCGACTGCCACAACCCTAGGTCAGACTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGC
CAACCCACAAAACGAGCGTGCGAGCGCTCAGCCGACCGAAAAGGCAGAATGCGCAAGCCAGGGAT
CGGCCCAGTCCCCCCTGCATGCTGTCGATCCTGCTACCGTAACCCTCAGTCTGGTCAGATCTTAG
ACTGGGAATGAACTCTGTATGCC
Found at i:23415909 original size:159 final size:157
Alignment explanation
Indices: 23415561--23415935 Score: 398
Period size: 158 Copynumber: 2.4 Consensus size: 157
23415551 AACTCTGTAT
* * *
23415561 GCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCG-ACAG
* * * *
23415626 CCAGCCGGAGAGGCAAAATCCGTAAGTCGGGGATCAGCCTGGTCCCCCTTGCGTGCTGTCGATCC
65 CCAGCCAGAGAGGCAAAATCCGCAAGCCGGGGATCAGCCTGATCCCCCTTGCGTGCTGTCGATCC
* * * *
23415691 TACTATCACAACCCTCGGTCCGGTCCGA
130 CACTAGCACAACCCTCGATCCGGTCAGA
* * * * *
23415719 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGATCGTACGGGC-ACAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGAC-A
* * * *
23415782 TGCCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGGTCC-GATCCCCCTCTGCGTGCTGTCG
64 -GCCAGCCAGAGAGGCAAAATCCGCAAGCCGGGGATCAG-CCTGATCCCCCT-TGCGTGCTGTCG
* ** * * *
23415846 GTCCCGTTGGCACAACCCTCGATCTGG-CTAGG
126 ATCCCACTAGCACAACCCTCGATCCGGTC-AGA
* * *
23415878 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGG
23415936 TGCTCAGCTG
Statistics
Matches: 176, Mismatches: 34, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
156 1 0.01
157 2 0.01
158 90 0.51
159 82 0.47
160 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGACAGC
CAGCCAGAGAGGCAAAATCCGCAAGCCGGGGATCAGCCTGATCCCCCTTGCGTGCTGTCGATCCC
ACTAGCACAACCCTCGATCCGGTCAGA
Found at i:23415911 original size:863 final size:859
Alignment explanation
Indices: 23413799--23416138 Score: 2472
Period size: 871 Copynumber: 2.7 Consensus size: 859
23413789 GTGGCTCAAA
* * * *
23413799 ATCTTAGATTGGGATTGAACTCCGTATGCTTAGACATGGAATGAACTACGTATGCCTAAACCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* ** * * *
23413864 CCATGAAATGAGCGTGTAAGCGCACAG-CAG-GGTAGAGAGGCAAAATACGCAAGTCGGGGATC-
66 CCATGAAACGAGCGTGTGGGCGCTCAGCCAGCCG--GAGAGGCAAAATACGTAAGTCGGGGATCA
** * * * *
23413926 GACCCAATCCGCCCTTGCGTGCTGTCGATCCTAC-AGCAGCAACCGTCGGTCTGGTCTGATCTTA
129 G-CCTGATCC-CCCTTGCGTGCTGTCGATCCTACTACCA-CAACCCTCGGTCCGGTCCGATCTTA
* * * ** * *
23413990 GACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCATG--TGTTGCGTCG
191 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACGATGC--CG
* * * * * * *
23414053 ATCAAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTACCCCTTTACGTGCTGCCCGTCCCG
254 GTCAGAGAGGCATAATGCGCAAGCCGGGGATCGGACCGGTCCCCCTCTGCGTGCTGCCCGTCCCG
**
23414118 CTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATAACTAAGCCAACC
319 CTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * *
23414183 CATGAAATGGGCGTGC-AGGTGCTCAGC-CAGCCGAAGAGGCAGAATGCACAAGCCTGGGACCGG
384 CATGAAACGGGCGTGCGA-GTGCTCAGCTGA-CCGAAGAGGCAGAATGCGCAAGCCTGGGATCGG
* * * * * ** * * *
23414246 CCCGATCACCCCTGCGTGTTGTCGGTCCTACTGCCACAACCCTCGGTCTGATCCGATCTTAGACT
447 CCAG-TC-CCCCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCAGTCTGGTCAGATCTTAGACT
* * *
23414311 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCT-ATGTCTACCCATGAAAC
510 GGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAT-TCAACCCATGAAAC
* *
23414375 GAGCGTGCGGGCGTTCAGCCGACCGGAGAGGCTGGTCGGAGAGGCATAATGCGCAAGCTGAGGAT
574 GAGCGTGCGGGCGCTCAGCCGACCGGAGA-G-TGGTCGGAGAGGCACAATGCGCAA-C-GAGGAT
* * *
23414440 CAACCCGATCCCCTTCTACGTGCTGTCGATCCCGCTGCCGATCCTGCTGCCACAACCCTCGGTCT
635 CAACCCGATCCCCCTCTACGTGCTGTCGA-----CTGCCGATCCTACTGCCACAACCCTAGGTCT
* * * **
23414505 GGCTGGGGCTTAGACATGGAATGAACTCTGTATCCCTAAGCCAACTCATGAAACGAGCGTGCGGG
695 AGCTGGGGCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACCCACAAAACGAGCGTGCGGG
* ** *
23414570 CACTCAGTCGGTCAAAAAGGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCCTGCCTGCGTGCT
760 CACTCAGCCGACCAAAAAGGCAGAATGCGCAAGCCGGGGATCAACCCAGTCCCTGCCTGCGTGCT
**
23414635 ACCGATCCTGCTGCTGCAATGCTCGGTCTGGTCTG
825 ACCGATCCTGCTGCTGCAACCCTCGGTCTGGTCTG
**
23414670 ATCTTAGACTGTAAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * ** * * * *
23414735 CCACGAAACGAACGTATGGGCGCTCAGCC-GACCGGAGAGGCAGAATGTGTATGCCAGGGTTCAG
66 CCATGAAACGAGCGTGTGGGCGCTCAGCCAG-CCGGAGAGGCAAAATACGTAAGTCGGGGATCAG
* ** * * * * * *
23414799 -CTCGATCCCACCCTATGTTCTATCGATCTTGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGA
130 CCT-GATCCC-CCTTGCGTGCTGTCGATCCTACTACCACAACCCTCGGTCCGGTCCGATCTTAGA
* * * *
23414863 CTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTGA-GACAGTG
193 CTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCAC-GATGCCGGTC
* * * * * *
23414927 GGAGAGGCATAATGCACAAGCCGGGGAAC-GACTCGGTCCCTCTCTGCATGCTGCCTGT-CCGAC
257 AGAGAGGCATAATGCGCAAGCCGGGGATCGGAC-CGGTCCCCCTCTGCGTGCTGCCCGTCCCG-C
* * * *
23414990 TGCCACAACCCTTGGTCCGACTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
320 TGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * *
23415055 ACGAAACGGGCGTGCGAGTGCTCAGCTGACCGAAAAGGCAGAATGCGCAAGCCAGGGATCGGCCT
385 ATGAAACGGGCGTGCGAGTGCTCAGCTGACCGAAGAGGCAGAATGCGCAAGCCTGGGATCGGCC-
23415120 AGTCCCCTCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCAGTCTGGTCAGATCTTAGACTGGG
449 AGTCCCC-CTGCGTGCTGTCGATCCTGCTACCGTAACCCTCAGTCTGGTCAGATCTTAGACTGGG
* ** * *
23415185 AATGAACTCTGTATGCCTAGACTACGGATGAACTGCGTATGCCTAATTCAACCCATGAAACGAGT
513 AATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAATTCAACCCATGAAACGAGC
* * * * * * *
23415250 GTGTGGGTGCTCAGTCGACCGGAGA-T-G-CGTA-ATGCACAA-GC-C-A-G-GGATCGACCCGG
578 GTGCGGGCGCTCAGCCGACCGGAGAGTGGTCGGAGAGGCACAATGCGCAACGAGGATCAACCCGA
* * *
23415306 TCCCCCTCTGCGTGCTGTCGA-TGCCGGTCCTACTGGCACAACCCTAGGT-TCAGCTGGGGCTTA
643 TCCCCCTCTACGTGCTGTCGACTGCCGATCCTACTGCCACAACCCTAGGTCT-AGCTGGGGCTTA
* * * *
23415369 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACTAGCGTGTGGGCGCTCAGCCGAC
707 GACATGGAATGAACTCCGTATCCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCGAC
** * * * * **
23415434 CGGAGAGGTAGAATGTGCAAGTCGGGGATCGGCCCAGTCCCCCCCTGCATGCTGTCGATCTTGCT
772 CAAAAAGGCAGAATGCGCAAGCCGGGGATCAACCCAGT----CCCTGC---CTG-CG----TGCT
* * * *
23415499 GCTGGTCCTGCTG-TCGCAACCCTCGAT-TCGGTCTG
825 ACCGATCCTGCTGCT-GCAACCCTCGGTCT-GGTCTG
* *
23415534 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
23415599 CCATGAAACGAGCGTGCGGGCGTTCAGCCAGCCGGAGAGGCAAAATCCGTAAGTCGGGGATCAGC
66 CCATGAAACGAGCGTGTGGGCGCTCAGCCAGCCGGAGAGGCAAAATACGTAAGTCGGGGATCAGC
* *
23415664 CTGGTCCCCCTTGCGTGCTGTCGATCCTACTATCACAACCCTCGGTCCGGTCCGATCTTAGACTA
131 CTGATCCCCCTTGCGTGCTGTCGATCCTACTACCACAACCCTCGGTCCGGTCCGATCTTAGACTA
* * * * *
23415729 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGATCGTACGGGCACAATGCCGGCCAGAG
196 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACGATGCCGGTCAGAG
* * * * * *
23415794 AGGCATAATGCGCAAGCCGGGGATCGGTCCGATCCCCCTCTGCGTGCTGTCGGTCCCGTTGGCAC
261 AGGCATAATGCGCAAGCCGGGGATCGGACCGGTCCCCCTCTGCGTGCTGCCCGTCCCGCTGCCAC
* *
23415859 AACCCTCGATCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
326 AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
* ** * ** * *
23415924 CGGGCGTGCGGGTGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAG-CTGACAATTGGCCCGGTCC
391 CGGGCGTGCGAGTGCTCAGCTGACCGAAGAGGCAGAATGCGCAAGCCTG-GGATCGG-CCAGT-C
* ** *
23415988 CCCCTGGGTGCTACCGATCCTGCTACCGTAACCCTCAGTCCGGTCCA-ATCTTAGACTGGGAATG
453 CCCCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCAGTCTGGT-CAGATCTTAGACTGGGAATG
* ** * *
23416052 AACT-TCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATAAGGGTA
517 AACTCT-GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAATTCAACCCATGAAACGAGCGTG
* *
23416116 CGGGCGCTTAGCCGACCAGAGAG
581 CGGGCGCTCAGCCGACCGGAGAG
23416139 GCAGGATGCG
Statistics
Matches: 1211, Mismatches: 215, Indels: 93
0.80 0.14 0.06
Matches are distributed among these distances:
851 1 0.00
852 118 0.10
856 6 0.00
858 29 0.02
859 4 0.00
860 2 0.00
862 5 0.00
863 379 0.31
864 160 0.13
865 9 0.01
866 3 0.00
867 1 0.00
868 1 0.00
870 10 0.01
871 471 0.39
872 9 0.01
873 2 0.00
874 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (859 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCATGAAACGAGCGTGTGGGCGCTCAGCCAGCCGGAGAGGCAAAATACGTAAGTCGGGGATCAGC
CTGATCCCCCTTGCGTGCTGTCGATCCTACTACCACAACCCTCGGTCCGGTCCGATCTTAGACTA
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACGATGCCGGTCAGAG
AGGCATAATGCGCAAGCCGGGGATCGGACCGGTCCCCCTCTGCGTGCTGCCCGTCCCGCTGCCAC
AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
CGGGCGTGCGAGTGCTCAGCTGACCGAAGAGGCAGAATGCGCAAGCCTGGGATCGGCCAGTCCCC
CTGCGTGCTGTCGATCCTGCTACCGTAACCCTCAGTCTGGTCAGATCTTAGACTGGGAATGAACT
CTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAATTCAACCCATGAAACGAGCGTGCGGGC
GCTCAGCCGACCGGAGAGTGGTCGGAGAGGCACAATGCGCAACGAGGATCAACCCGATCCCCCTC
TACGTGCTGTCGACTGCCGATCCTACTGCCACAACCCTAGGTCTAGCTGGGGCTTAGACATGGAA
TGAACTCCGTATCCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCGACCAAAAAGGC
AGAATGCGCAAGCCGGGGATCAACCCAGTCCCTGCCTGCGTGCTACCGATCCTGCTGCTGCAACC
CTCGGTCTGGTCTG
Found at i:23415954 original size:159 final size:157
Alignment explanation
Indices: 23415561--23415969 Score: 430
Period size: 159 Copynumber: 2.6 Consensus size: 157
23415551 AACTCTGTAT
* *
23415561 GCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG-GCTCAG
* * * * *
23415626 CCAGCCGGAGAGGCAAAATCCGTAAGTCGGGGATCAGCCTGGTCCCCCTTGCGTGCTGTCGATCC
65 CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCTGATCCCCCTTGCGTGCTGTCGATCC
* * * *
23415691 TACTATCACAACCCTCGGTCCGGTCCGA
130 CACTAGCACAACCCTCGATCCGGTCAGA
* * * * * * *
23415719 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGATCGTAC-GGGCACAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGGCTC-A
* * *
23415782 TGCCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGGTCC-GATCCCCCTCTGCGTGCTGTCG
64 -GCCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAG-CCTGATCCCCCT-TGCGTGCTGTCG
* ** * * *
23415846 GTCCCGTTGGCACAACCCTCGATCTGG-CTAGG
126 ATCCCACTAGCACAACCCTCGATCCGGTC-AGA
* *
23415878 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG-GCTCAG
* * *
23415943 CTGGTCGGAGAGGCAGAATGCGCAAGC
65 CCGGCCGGAGAGGCAAAATGCGCAAGC
23415970 TGACAATTGG
Statistics
Matches: 202, Mismatches: 40, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
156 2 0.01
157 4 0.02
158 86 0.43
159 103 0.51
160 4 0.02
161 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGGCTCAGC
CGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCTGATCCCCCTTGCGTGCTGTCGATCCC
ACTAGCACAACCCTCGATCCGGTCAGA
Found at i:23416073 original size:26 final size:26
Alignment explanation
Indices: 23416037--23416089 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23416027 CCGGTCCAAT
*
23416037 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23416063 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23416089 C
1 C
23416090 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23423264 original size:26 final size:26
Alignment explanation
Indices: 23423226--23423278 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23423216 TCGGTCCGAT
*
23423226 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23423252 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23423278 C
1 C
23423279 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.