Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 232 of 402
Found at i:23423757 original size:26 final size:26
Alignment explanation
Indices: 23423728--23423780 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23423718 CTGGTCCGAT
23423728 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
23423754 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
23423780 C
1 C
23423781 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:23424054 original size:355 final size:348
Alignment explanation
Indices: 23423411--23424205 Score: 885
Period size: 355 Copynumber: 2.2 Consensus size: 348
23423401 CCGATCCAAT
* * * *
23423411 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACGCACGAAACGAGTGTTCGGGCGTTGAG
1 CTTAGACTAGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* * * *
23423475 CCGGTCGGAGTGGCATAATGCTCAAGTCAGGGATCGGCCCAGTCGTACTCTATATGTTATCGGTC
65 CCGGTCGGAGAGGCATAATGCACAAGTCAGGGATCAGCCCAG-CGTACCCTATATGTTATCGGTC
* *
23423540 CCGCTACCACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCA
129 CCGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * ** * *
23423605 ACCCATGAAACGGGCGTGCGGGCGCTTAGTCGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCG
194 ACCCATGAAACGAGCGTGCAGGCGCTCAACCGGCCGAAAAGGCAGAATGCACAAGCCGGGGATCA
* ** * *
23423670 GCCCAGTCCCCCCTGCGTGCTGTCGA-T-C-CT-G-CTG-TCGCAACCCTCGGTCTGGTCCGATC
259 GCCCAGTCCCCCCTACGTGCTACCGACTGCGCTGGCCTGATCGCAACCCTCGGTCCGATCCGATC
*
23423729 TTAGACTAGGAATGAACTCCGTATG
324 TTAGACTAGGAATGAACTCCATATG
*
23423754 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
*
23423819 CGGTCGGAGAGGCATAATGCACAAGTC-GAGGATCAGCCC-G-GTACCCCTCTATGTTCTGCCGA
66 CGGTCGGAGAGGCATAATGCACAAGTCAG-GGATCAGCCCAGCGTA-CCCTATATG-T-T----A
* * * **
23423881 TCCCGCTGTCAGTCCTGCTGCCACAACCCTCGGTCCGGCTGTTGCTTAGACATGGAATGAACTCC
123 T--CG--GTC---CC-GCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCC
* * * *
23423946 GTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAACCGGCTGAAAAGGTAGAATGCA
180 CTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAACCGGCCGAAAAGGCAGAATGCA
*
23424011 CAAGCCGGGGATCAGCCC-GATCCTCCCTACGTGCTACCGATCCTGCTGCTGGTCCTGCTATCGC
245 CAAGCCGGGGATCAGCCCAG-TCCCCCCTACGTGCTACCGA--CTGC-GCTGG-CCTG--ATCGC
* ** *
23424075 AACCTTCGGTCCGATTTGATCTTAGACTGGGAATGAACTCCATATG
303 AACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCATATG
* *
23424121 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
1 CTTAGACTA-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* *
23424185 TCGGTCGGAGAGGCAGAATGC
65 CCGGTCGGAGAGGCATAATGC
23424206 GTAAGCCAGG
Statistics
Matches: 377, Mismatches: 44, Indels: 38
0.82 0.10 0.08
Matches are distributed among these distances:
340 3 0.01
341 7 0.02
342 3 0.01
343 91 0.24
344 3 0.01
347 2 0.01
349 2 0.01
351 3 0.01
354 3 0.01
355 130 0.34
358 1 0.00
359 1 0.00
361 2 0.01
362 1 0.00
364 3 0.01
366 1 0.00
367 121 0.32
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (348 bp):
CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
CGGTCGGAGAGGCATAATGCACAAGTCAGGGATCAGCCCAGCGTACCCTATATGTTATCGGTCCC
GCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCATGAAACGAGCGTGCAGGCGCTCAACCGGCCGAAAAGGCAGAATGCACAAGCCGGGGATCAGC
CCAGTCCCCCCTACGTGCTACCGACTGCGCTGGCCTGATCGCAACCCTCGGTCCGATCCGATCTT
AGACTAGGAATGAACTCCATATG
Found at i:23424133 original size:26 final size:26
Alignment explanation
Indices: 23424095--23424147 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23424085 CCGATTTGAT
23424095 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
23424121 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
23424147 C
1 C
23424148 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23424520 original size:26 final size:26
Alignment explanation
Indices: 23424491--23424543 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23424481 CCGGTCTGCT
*
23424491 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
23424517 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
23424543 C
1 C
23424544 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:23424805 original size:399 final size:396
Alignment explanation
Indices: 23424054--23424835 Score: 1161
Period size: 399 Copynumber: 2.0 Consensus size: 396
23424044 CTACCGATCC
* * * *
23424054 TGCTGCTGGTCCTGCTATCGCAACCTTCGGTCCGATTTGATCTTAGACTGGGAATGAACTCCATA
1 TGCTGCTAGTCCTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATA
* * *
23424119 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCA
66 TGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * * * ** *
23424184 GTCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGACCGACCCGATCCCCCCGCACTGTCGATCCTG
131 GCCAGCCGGAGAGACAGAATGCACAAGCCAGGGACCGACCCAATCCCCCCGCACTGTCGATCCTG
* * * * **
23424249 TTGCCACAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACG
196 CTACCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACG
*
23424314 CACGAAACGAGTGTTCGGGCACTGAGCCGGTCGGAGTGGCATAATGCTCAAGCCGAGGATCAGCC
261 CACGAAACGAGTGTTCGGGCACTGAGCCGATCGGAGTGGCATAATGCTCAAGCCGAGGATCAGCC
* *
23424379 CGGTCGTCCTCTACATGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGACTGGGGCTCGATCCC
326 CGATCGTCCTCTACATGCTGCCGGTCCCGCTGCCACAACCCTCGATCCGACTGGGGCTCGATCCC
23424444 CCTGCG
391 CCTGCG
* * * *
23424450 TGCTGCTAGTCTTGCTACCGCAACCCTCGGTCCGGTCTGCTCTTAGACTGGGAATGAACTCCGTA
1 TGCTGCTAGTCCTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATA
*
23424515 TGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCA
66 TGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * **
23424580 GCCAGCCGGAGAGACAGAATGCACAAGCCAGGGATCGGCCCAATCCCCCCTACGTGCTGTCGATC
131 GCCAGCCGGAGAGACAGAATGCACAAGCCAGGGACCGACCCAAT-CCCCC--CGCACTGTCGATC
* * * *
23424645 CTGCTACCGCAACCTTCGGTCCTATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGT-
193 CTGCTACCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA-GTC
* *
23424709 AACGCACGAAATGAGTGTTCGGGCACTGAGCCGATCGGAGTGGCATAATGCTCAAGCCGGGGATC
257 AACGCACGAAACGAGTGTTCGGGCACTGAGCCGATCGGAGTGGCATAATGCTCAAGCCGAGGATC
* *
23424774 AGCCCGATCGTCCTCTGCATGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCT
322 AGCCCGATCGTCCTCTACATGCTGCCGGTCCCGCTGCCACAACCCTCGATCCGACTGGGGCT
23424836 TAGACATGGA
Statistics
Matches: 342, Mismatches: 40, Indels: 5
0.88 0.10 0.01
Matches are distributed among these distances:
396 153 0.45
397 5 0.01
399 182 0.53
400 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.21
Consensus pattern (396 bp):
TGCTGCTAGTCCTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATA
TGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
GCCAGCCGGAGAGACAGAATGCACAAGCCAGGGACCGACCCAATCCCCCCGCACTGTCGATCCTG
CTACCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACG
CACGAAACGAGTGTTCGGGCACTGAGCCGATCGGAGTGGCATAATGCTCAAGCCGAGGATCAGCC
CGATCGTCCTCTACATGCTGCCGGTCCCGCTGCCACAACCCTCGATCCGACTGGGGCTCGATCCC
CCTGCG
Found at i:23425029 original size:158 final size:157
Alignment explanation
Indices: 23424517--23425297 Score: 572
Period size: 158 Copynumber: 4.9 Consensus size: 157
23424507 ACTCCGTATG
* *
23424517 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTCAG
* * *
23424581 CCAGC-CGGAGAGACAGAATGCACAAGCC-AGGGATCGGCCCAATCCCCCCTACGTGCTGTCGAT
65 CCA-CTCGGAGAGGCAGAATGCACAAGCCGA-GGATCAGCCCGATCCCCCCTACGTGCTGTCGAT
* * * **
23424644 CCTGCTACCGCAACCTTCGGTCCTATCCAAT
128 CCTGCTGCCGCAACCCTCGGT-CTGTCTGAT
** * * * * *
23424675 CTTAGACTGGGAATGAACTCCGTATGCCTAAGGTAACGCACGAAATGAGTGTTCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTCAGC
* * * * * * * * * *
23424740 CGA-TCGGAGTGGCATAATGCTCAAGCCGGGGATCAGCCCGATCGTCCTCTGCATGCTGCCGGTC
66 C-ACTCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATC-CCCCCTACGTGCTGTCGATC
* * * * **
23424804 CCGCTGCCACAACCCTCGGTCCGACTGGGG
129 CTGCTGCCGCAACCCTCGGTCTGTCT-GAT
* * * * * *
23424834 CTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTCAG
* *
23424898 TCGACT-GGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATC
65 -CCACTCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCCTACGTGCTGTCGATC
* *
23424962 CTGTTGCTGCAACCCTCGGTCTGGTCTGAT
129 CTGCTGCCGCAACCCTCGGTCT-GTCTGAT
* * * * *
23424992 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCTACAAAATGAACGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTCAGC
* * * * * *
23425057 CAGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTACCCCTCTGCATTCTGTCGATCC
66 CACTCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGAT-CCCC-C--C-TAC-GT-G---C
* * * * * *
23425122 CGCTACCGGTCCTGCTGCCACAACCCTCGGTCCGACTGTT
121 TG-T--CGATCCTGCTGCCGCAACCCTCGGTCTGTCTGAT
* ** * ***
23425162 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATTAAATGAGCGTACGGGTGGTCA
1 -CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTCA
* * * ** * * **
23425226 GCTGAC-CGGAGAGGCAGAATGCACAAGCTGGGGATC-GTTTCGGTCCCCTCTACGTGCTACCGA
64 GC-CACTCGGAGAGGCAGAATGCACAAGCCGAGGATCAG-CCCGATCCCCCCTACGTGCTGTCGA
23425289 TCCTGCTGC
127 TCCTGCTGC
23425298 TGGTCCTGCT
Statistics
Matches: 478, Mismatches: 116, Indels: 58
0.73 0.18 0.09
Matches are distributed among these distances:
157 5 0.01
158 214 0.45
159 123 0.26
160 4 0.01
161 1 0.00
162 1 0.00
163 2 0.00
164 3 0.01
165 3 0.01
166 2 0.00
167 1 0.00
168 2 0.00
169 1 0.00
170 10 0.02
171 104 0.22
172 2 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTCAGC
CACTCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTCTGTCTGAT
Found at i:23425091 original size:317 final size:324
Alignment explanation
Indices: 23424516--23425299 Score: 964
Period size: 317 Copynumber: 2.4 Consensus size: 324
23424506 AACTCCGTAT
23424516 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
* * *
23424581 CCAGCCGGAGAGACAGAATGCACAAGCC-AGGGATCGGCCCAATCCCCCCTACGTGCTGTCGATC
66 CGA-CCGGAGAGGCAGAATGCACAAGCCGA-GGATCGGCCCGATCCCCCCTACGTGCTGTCGATC
* * *
23424645 CTGCTACCGCAACCTTCGGTCCTATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGTA
129 CTGCTGCTGCAACCCTCGGTCCTATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGTA
* ** * * * *
23424710 ACGCACGAAATGAGTGTTCGGGCACTGAGCCGATCGGAGTGGCATAATGCTCAAGCCGGGGATCA
194 ACGCACAAAATGAACGTGCGGGCACTCAGCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCA
* * *
23424775 GCCC-G-A-TCGTC-C-TCTG-C-AT-GCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGACTGG
259 GCCCGGTACCCCTCGCATCTGTCGATCGCTACCGGTCCCGCTGCCACAACCCTCGGTCCGACTGG
23424832 G
324 G
* * * * *
23424833 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
*
23424898 TCGACTGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
66 -CGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
* * ** * *
23424963 TGTTGCTGCAACCCTCGGT-CTGGTCTGATCTTAGACTGGGGATGAACTCTGTATGCCTAA-GTC
130 TGCTGCTGCAACCCTCGGTCCT-ATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGT-
23425026 AAC-CTACAAAATGAACGTGCGGGCACTCAGCC-AGTCGGAGAGGCATAATGCGCAAGCCGGGGA
193 AACGC-ACAAAATGAACGTGCGGGCACTCAGCCGA-TCGGAGAGGCATAATGCGCAAGCCGGGGA
*
23425089 TCAGCCCGGTACCCCTCTGCATTCTGTCGATCCCGCTACCGGTCCTGCTGCCACAACCCTCGGTC
256 TCAGCCCGGTACCCCTC-GCA-TCTGTCGAT--CGCTACCGGTCCCGCTGCCACAACCCTCGGTC
**
23425154 CGACTGTT
317 CGACTGGG
** * * *
23425162 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATTAAATGAGCGTACGGGTGGTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
* * *** * * **
23425227 CTGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGTTTCGGTCCCCTCTACGTGCTACCGATCC
66 C-GACCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
23425292 TGCTGCTG
130 TGCTGCTG
23425300 GTCCTGCTAT
Statistics
Matches: 397, Mismatches: 51, Indels: 26
0.84 0.11 0.05
Matches are distributed among these distances:
316 6 0.02
317 223 0.56
318 4 0.01
319 1 0.00
320 3 0.01
322 1 0.00
324 4 0.01
325 1 0.00
326 2 0.01
328 1 0.00
329 151 0.38
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (324 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
CGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCT
GCTGCTGCAACCCTCGGTCCTATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGTAAC
GCACAAAATGAACGTGCGGGCACTCAGCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCAGC
CCGGTACCCCTCGCATCTGTCGATCGCTACCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGG
Found at i:23425362 original size:26 final size:26
Alignment explanation
Indices: 23425333--23425385 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23425323 CCGATTTGAT
23425333 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
23425359 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23425385 C
1 C
23425386 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23425837 original size:26 final size:26
Alignment explanation
Indices: 23425801--23425853 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23425791 CCGGTCCGAT
* *
23425801 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23425827 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23425853 C
1 C
23425854 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23426561 original size:26 final size:25
Alignment explanation
Indices: 23426522--23426573 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
23426512 GGCTCAAACT
*
23426522 CTTAGACTGGAATGAACTCTGTATG
1 CTTAGACTGGAATGAACTCCGTATG
23426547 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
23426573 C
1 C
23426574 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:23426894 original size:26 final size:26
Alignment explanation
Indices: 23426865--23426915 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
23426855 AATCTGATCC
*
23426865 TAGACTAGGAATGATCTCCGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
* *
23426891 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
23426916 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:23428984 original size:26 final size:26
Alignment explanation
Indices: 23428947--23428999 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
23428937 GTTGACTTAC
23428947 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
23428973 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
23428999 G
1 G
23429000 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:23429716 original size:26 final size:26
Alignment explanation
Indices: 23429663--23429718 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
23429653 TTGGTTGACT
*
23429663 TAAGCATATGGACTTCATCCCTAGTC
1 TAAGCATATGGACTTCATCCCTAATC
*
23429689 TAAGCATATGGAGTTCATTCCC-AATC
1 TAAGCATATGGACTTCA-TCCCTAATC
23429715 TAAG
1 TAAG
23429719 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.30
Consensus pattern (26 bp):
TAAGCATATGGACTTCATCCCTAATC
Found at i:23430217 original size:26 final size:26
Alignment explanation
Indices: 23430166--23430218 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23430156 GTTGGCTTAG
* *
23430166 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGCCTAA
23430192 GCATACGAAGTTCATTCCCA-GCCTAA
1 GCATACGAAGTTCATT-CCATGCCTAA
23430218 G
1 G
23430219 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGCCTAA
Found at i:23430575 original size:26 final size:26
Alignment explanation
Indices: 23430545--23430597 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23430535 GTTGACTTAG
23430545 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
23430571 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
23430597 G
1 G
23430598 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23430933 original size:158 final size:158
Alignment explanation
Indices: 23430645--23430933 Score: 361
Period size: 158 Copynumber: 1.8 Consensus size: 158
23430635 AGCATGCAGG
* * * * * * *
23430645 GGGGATTGGGTCGATCCTCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCTCCCACAGGCCC
1 GGGGATTGGGTCGATCCTCGACTTACACATTATGCCTCTCCAGCCGGCTCAGCACCCACACGCCC
* * * **
23430710 ATTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTT
66 ATTTCATGGGTTGACTTAGGCATAGGAGTTCATTCCATGTCTAAGCACCAGCCAAACAAAGGGTT
23430775 GTTGCAGTGGGACCGGCAGCACGTAGAT
131 GTTGCAGTGGGACCGGCAGCACGTAGAT
* * *
23430803 GGGGATTGGG-CTGATCCTCGACTTGCACATTATGCCTCTCCAGCCGGCTCAGCACTCACACGCT
1 GGGGATTGGGTC-GATCCTCGACTTACACATTATGCCTCTCCAGCCGGCTCAGCACCCACACGCC
* *
23430867 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CGTAGTCTAAG-ATCAGACCAAA-AAAG
65 CATTTCATGGGTTGACTTAGGCATA-GGAGTTCATTCCAT-GTCTAAGCACCAG-CCAAACAAAG
23430929 GGTTG
127 GGTTG
23430934 GGGCAGCAGG
Statistics
Matches: 110, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
157 1 0.01
158 87 0.79
159 22 0.20
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (158 bp):
GGGGATTGGGTCGATCCTCGACTTACACATTATGCCTCTCCAGCCGGCTCAGCACCCACACGCCC
ATTTCATGGGTTGACTTAGGCATAGGAGTTCATTCCATGTCTAAGCACCAGCCAAACAAAGGGTT
GTTGCAGTGGGACCGGCAGCACGTAGAT
Found at i:23431459 original size:26 final size:26
Alignment explanation
Indices: 23431419--23431474 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
23431409 TGGGTTGACT
*
23431419 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
* *
23431445 TAAGCATACATAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
23431471 TAAG
1 TAAG
23431475 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:23431755 original size:159 final size:157
Alignment explanation
Indices: 23431484--23431789 Score: 353
Period size: 159 Copynumber: 1.9 Consensus size: 157
23431474 GATCAGACTG
* * * * *
23431484 GACCAAGGGTTGCTGTAGCAGGATCGGCAGCACGTAAGAGGGACTGGGCCGATCCTCAGCTTGCG
1 GACCAAGGGTTGCTGCAGCAGGACCGGCAGCACGTAAGAGGGACCGGGCCGATCCCCAGCTTGCA
* * * * * ***
23431549 CATTCTGCCTCTCCGGCCGACTGAGCTCCCACATGCCCGTTTCATGGGTTGGCTTAGGCATAGGG
66 CATTATGCCTCTCCGGCCGACTCAGCACCCACA-GCCCGTTTCATGGGTTGACATAGGCATACAA
23431614 AGTTCATTCCATGTCTAGGCCCCAACCA
130 AGTTCATTCCATGTCTAGGCCCCAACCA
* * * * * *
23431642 GACCAAGGGTTGTTGCAGCGGGACCGGTAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGC
1 GACCAAGGGTTGCTGCAGCAGGACCGGCAGCACGTA-AGAGGGACCGGGCCGATCCCCAGCTTGC
* ** *
23431707 ACATTATGCCTCTCCGGCTGGTTCAGCACCCGAACA-CTCGTTTCATGGGTTGACATAGGCATAC
65 ACATTATGCCTCTCCGGCCGACTCAGCACCC--ACAGCCCGTTTCATGGGTTGACATAGGCATAC
*
23431771 AAAGTTCATTCCCTGTCTA
128 AAAGTTCATTCCATGTCTA
23431790 AGATTGGATC
Statistics
Matches: 121, Mismatches: 24, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
158 31 0.26
159 87 0.72
161 3 0.02
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.23
Consensus pattern (157 bp):
GACCAAGGGTTGCTGCAGCAGGACCGGCAGCACGTAAGAGGGACCGGGCCGATCCCCAGCTTGCA
CATTATGCCTCTCCGGCCGACTCAGCACCCACAGCCCGTTTCATGGGTTGACATAGGCATACAAA
GTTCATTCCATGTCTAGGCCCCAACCA
Found at i:23431791 original size:878 final size:879
Alignment explanation
Indices: 23429655--23431793 Score: 2748
Period size: 877 Copynumber: 2.4 Consensus size: 879
23429645 TCGTTTCGTT
* * * * *
23429655 GGTTGACTTAAGCATATGGACTTCATCCCTAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGA
1 GGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * ** *
23429720 TCGGACCGGACTGAGGGTTGC-GATAGCAGGATCGATAGCACGTAGGGGGGACCAGATCGATCCT
66 TCGGACTGGACCGAGGGTTGCTG-TAGCAGGATCGATAGCACGTAGGGGGGACTGGGTCGATCCT
* * * ** *
23429784 CGACTTATGCATTCTGCCTCTCCGTCCGACTGAGCACCTGCATGCCCGTTTTATGGGTTGGCTTA
130 CGACTTACGCATTCTGCCTCTCCGGCCGACTGAGCTCCCACATGCCCGTTTCATGGGTTGGCTTA
* * *
23429849 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGA-GGTTGTGGCAGCGGGACTGGC
195 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTTGCAGCGGGACCGGC
* *** * *
23429913 GGCATAAAGAGGGGGATCGGGCCGATCCCCGGCTTGCACATTATACCTCTCCGG-TGGACTCAAC
260 AGCACGTAGAGGGGGATCGGG-CGATCCCCGGCTTGCACATTATGCCTCTCCGGCTGG-CTCAGC
* * * * * *
23429977 GCCCGTATGCTCTTTTCATGGGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCGAAC
323 ACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAAGATCGAAC
** * ** *
23430042 CAAACTGAGGGTTGCGGTAGCAAGATCGATAGCACGTAGGGGGGACCGAGCCAGGCCATAGCTTG
388 CAAACAAAGGGTTGCGGCAGCAAGATCGATAGCACACAGGGGGGACCGAGCCAGGCCACAGCTTG
* * *
23430107 CACATTCTGCCTTTCCGGTCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
453 CACATTCTGCCTCTCCGCTCGACTGAGCACCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * *
23430172 GGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGCCTAAGATCAGATCGGACCGAGGG
518 GGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAACCTAAGATCAGACCGGACCGAAGG
* * * * *
23430237 TTACGGCAGCAGGACCAGCAGCAGGATCGATAGCATGCAGGGGGGATCGGGTCGATCCTCGACTT
583 TTACGGCAGCAAGACCAGCAGCAGGATCAACAGCATGCAGGGGGGACCGGGTCAATCCTCGACTT
* * * *
23430302 GCGCATTCTACGTCTCCGGCAGCTGAGATCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATAC
648 ACGCATTCTACCTCTCCAGCAGCTGAGATCCCACACGCTCATTTCATGGGTTGGCTTAGGCATAC
* *
23430367 AGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAGCAGGATCAGCAGCGGGA
713 AGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTATGGCAGCAGGACCAGCAGCGGGA
* * * * *
23430432 TCGACAGCACGCAGAGGGGGATCGGGCTAATCCCCGACTTATGCAATATGCCTTTCCGGCTAGCC
778 TCGACAGCACGCAGAGAGGGACCGGGCTAATCCCCGACTTACGCAATATACCTTTCCGGCGAGCC
* * *
23430497 TCTCCGACTGACTGAGTGCCCACAAGCTCATTTCATG
843 TCTCCGACCGACTAAGTGCCCACAAGCTAATTTCATG
* *
23430534 GGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
*** * * * * *
23430599 TCGGA-TCGGACCGAGGGTTGCTACCGTAAGATCGATAGCATGCAGGGGGGATTGGGTCGATCCT
66 TCGGACT-GGACCGAGGGTTGCTGTAGCAGGATCGATAGCACGTAGGGGGGACTGGGTCGATCCT
* * * * *
23430663 CGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCTCCCACAGGCCCATTTCGTGGGTTGGCTTA
130 CGACTTACGCATTCTGCCTCTCCGGCCGACTGAGCTCCCACATGCCCGTTTCATGGGTTGGCTTA
* *
23430728 GGCATA-GGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTTGCAGTGGGACCGGC
195 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTTGCAGCGGGACCGGC
* * * * * *
23430792 AGCACGTAGATGGGGATTGGGCTGATCCTCGACTTGCACATTATGCCTCTCCAGCCGGCTCAGCA
260 AGCACGTAGAGGGGGATCGGGC-GATCCCCGGCTTGCACATTATGCCTCTCCGGCTGGCTCAGCA
* * *
23430857 CTC-ACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CGTAGTCTAAGATC-AG
324 CCCGA-ACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCT-GTCTAAGATCGA-
* * * * *
23430919 ACCAAA-AAAGGGTTGGGGCAGCAGGATCGATAGCATACAGGGGGGACCG-GACC-GATCCCCAG
386 ACCAAACAAAGGGTTGCGGCAGCAAGATCGATAGCACACAGGGGGGACCGAG-CCAG-GCCACAG
* * **
23430981 CTTGCGCATTCTGCCTCTCCGACT-GACTGAGC-GCTCGCACGCTCGTTTCGTTTGTTGGCTTAG
449 CTTGCACATTCTGCCTCTCCG-CTCGACTGAGCACCT-GCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
23431044 GGATACGGAGTTCATTCCATGTCTAAGCATAC-AGAGTTGATTCCCAACCTAAGATCGGACCGGA
512 GCATACGGAGTTCATTCCATGTCTAAGCATACGA-AGTTCATTCCCAACCTAAGATCAGACCGGA
* *
23431108 CCGAAGGTTACGGTAGCAAGACCAGCAGCAGGATCAACAGCATGTA-GGGGGACCGGGTCAATCC
576 CCGAAGGTTACGGCAGCAAGACCAGCAGCAGGATCAACAGCATGCAGGGGGGACCGGGTCAATCC
** * *
23431172 TCGACTTACGCATTCTACCTCTCCAGCAGCTGAGTAT-CTGCATGCTCATTTCGTGGGTTGGCTT
641 TCGACTTACGCATTCTACCTCTCCAGCAGCTGAG-ATCCCACACGCTCATTTCATGGGTTGGCTT
*
23431236 AGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAAGGTTATGGCAGCAGGACCAG
705 AGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTATGGCAGCAGGACCAG
** * * * * * *
23431301 CAGCGGGATCGGTAGCATGCAGAGAGGGACCGGGCTGATCCCTGGCTTACGCATTATACCTTTTC
770 CAGCGGGATCGACAGCACGCAGAGAGGGACCGGGCTAATCCCCGACTTACGCAATATACCTTTCC
* * * *
23431366 GATCGA-CCTCTCCGGCCGACTAAGTGCCCACACGCTAATTTTATG
835 G-GCGAGCCTCTCCGACCGACTAAGTGCCCACAAGCTAATTTCATG
**
23431411 GGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACATAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * ** * * *
23431476 TCAGACTGGACCAAGGGTTGCTGTAGCAGGATCGGCAGCACGTAAGAGGGACTGGGCCGATCCTC
66 TCGGACTGGACCGAGGGTTGCTGTAGCAGGATCGATAGCACGTAGGGGGGACTGGGTCGATCCTC
*
23431541 -AGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCTCCCACATGCCCGTTTCATGGGTTGGCTTA
131 GA-CTTACGCATTCTGCCTCTCCGGCCGACTGAGCTCCCACATGCCCGTTTCATGGGTTGGCTTA
* * * *
23431605 GGCATAGGGAGTTCATTCCATGTCTAGGCCCCAACCAGACCAAGGGTTGTTGCAGCGGGACCGGT
195 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTTGCAGCGGGACCGGC
* *
23431670 AGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGGCTGGTTCAGCA
260 AGCACGTAGAGGGGGATCGGG-CGATCCCCGGCTTGCACATTATGCCTCTCCGGCTGGCTCAGCA
* * * *
23431735 CCCGAACACTCGTTTCATGGGTTGACATAGGCATACAAAGTTCATTCCCTGTCTAAGAT
324 CCCGAACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAAGAT
23431794 TGGATCGAAC
Statistics
Matches: 1074, Mismatches: 165, Indels: 43
0.84 0.13 0.03
Matches are distributed among these distances:
876 1 0.00
877 394 0.37
878 385 0.36
879 292 0.27
880 2 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (879 bp):
GGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCGGACTGGACCGAGGGTTGCTGTAGCAGGATCGATAGCACGTAGGGGGGACTGGGTCGATCCTC
GACTTACGCATTCTGCCTCTCCGGCCGACTGAGCTCCCACATGCCCGTTTCATGGGTTGGCTTAG
GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTTGCAGCGGGACCGGCA
GCACGTAGAGGGGGATCGGGCGATCCCCGGCTTGCACATTATGCCTCTCCGGCTGGCTCAGCACC
CGAACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAAGATCGAACCAA
ACAAAGGGTTGCGGCAGCAAGATCGATAGCACACAGGGGGGACCGAGCCAGGCCACAGCTTGCAC
ATTCTGCCTCTCCGCTCGACTGAGCACCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAACCTAAGATCAGACCGGACCGAAGGTTA
CGGCAGCAAGACCAGCAGCAGGATCAACAGCATGCAGGGGGGACCGGGTCAATCCTCGACTTACG
CATTCTACCTCTCCAGCAGCTGAGATCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACAGA
GTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTATGGCAGCAGGACCAGCAGCGGGATCG
ACAGCACGCAGAGAGGGACCGGGCTAATCCCCGACTTACGCAATATACCTTTCCGGCGAGCCTCT
CCGACCGACTAAGTGCCCACAAGCTAATTTCATG
Found at i:23432441 original size:26 final size:26
Alignment explanation
Indices: 23432405--23432454 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
23432395 GGCTTAGGCA
23432405 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGGAGTTCATTCCCA-GTCTAAGCG
23432431 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
23432455 GTCAGACAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:23434343 original size:26 final size:26
Alignment explanation
Indices: 23434306--23434358 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23434296 GTTGACATAG
23434306 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
23434332 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
23434358 G
1 G
23434359 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:23434674 original size:158 final size:158
Alignment explanation
Indices: 23434332--23434664 Score: 370
Period size: 158 Copynumber: 2.1 Consensus size: 158
23434322 CCCAGTCTAA
* * * * **** *
23434332 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATC-GAGGGTTGTGGTAGTAGGATCGAC
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGGAGGGTTGCAACAGTAAGATCGAC
* ** *
23434396 AGCACGTAGGGGGGACCGGGCGGATGCCCGACTTGTGCATTCTGCCTCTCCGGCTGGCTAAATGC
65 AGCACGCAGGGGGGACCGGGCGGATGCCCGACTTGCACATTCTGCCTCTCCGGCTAGCTAAATGC
* *
23434461 CCGCATGCCCGTTTTGTGGGTTGACTTAG
130 CCGCACGCCCGTTTCGTGGGTTGACTTAG
23434490 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACGGAGGGTTGCAACAGTAAGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACGGAGGGTTGCAACAGTAAGATCGACA
* * * * *
23434555 GCACGCAGGGGGGATCGGGTC-GA-GTCCCGACTTGCACATTCTGTCTCTCC-GATCAGCTGAGT
66 GCACGCAGGGGGGACCGGG-CGGATG-CCCGACTTGCACATTCTGCCTCTCCGGCT-AGCTAAAT
* * * *
23434617 GCCCGTACGCTCGTTTCGTGGGTTGGCTTGG
128 GCCCGCACGCCCGTTTCGTGGGTTGACTTAG
23434648 GCATAC-AGAGTTCATTC
1 GCATACGA-AGTTCATTC
23434665 TATGTCTAAG
Statistics
Matches: 146, Mismatches: 24, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
157 5 0.03
158 140 0.96
159 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACGGAGGGTTGCAACAGTAAGATCGACA
GCACGCAGGGGGGACCGGGCGGATGCCCGACTTGCACATTCTGCCTCTCCGGCTAGCTAAATGCC
CGCACGCCCGTTTCGTGGGTTGACTTAG
Found at i:23435064 original size:26 final size:26
Alignment explanation
Indices: 23435028--23435080 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23435018 GTTGACTTAG
* *
23435028 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
23435054 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
23435080 G
1 G
23435081 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23435416 original size:159 final size:159
Alignment explanation
Indices: 23435261--23435555 Score: 362
Period size: 159 Copynumber: 1.9 Consensus size: 159
23435251 TGAGGGTTGT
* * * *
23435261 GGCAGCGGGACCGATAGCACATAGAGG-GGGACCGGG-CTGATCCCCGGCTTGCGCATTATGCCT
1 GGCAGCAGGACCGACAGCACATAG-GGTGGGACCGGGTC-AATCCCCAGCTTGCGCATTATGCCT
* * *
23435324 CTCCGGCTGGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCC
64 CTCCGGCAGACTCAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCC
23435389 -TAGTCTAAAATCGGACAGGATCAAGGGTTAC
129 ATA-TCTAAAATCGGACAGGATCAAGGGTTAC
* * * * *
23435420 GGTAGCAGGATCGACAGCACGTAGGGTGGGACTGGGTCAATCCCCAGCTTGTGCATTATGCCTCT
1 GGCAGCAGGACCGACAGCACATAGGGTGGGACCGGGTCAATCCCCAGCTTGCGCATTATGCCTCT
* * * * * * * *
23435485 CTGGCAGATTGAGCGCCCGCACGCTCGTTTCGTGTGTTGGCTTAGGCATACGGAGTTCATTCCAT
66 CCGGCAGACTCAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCAT
23435550 ATCTAA
131 ATCTAA
23435556 GCATGCGGAG
Statistics
Matches: 113, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
158 2 0.02
159 108 0.96
160 3 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
GGCAGCAGGACCGACAGCACATAGGGTGGGACCGGGTCAATCCCCAGCTTGCGCATTATGCCTCT
CCGGCAGACTCAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCAT
ATCTAAAATCGGACAGGATCAAGGGTTAC
Found at i:23435566 original size:26 final size:25
Alignment explanation
Indices: 23435530--23435590 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 25
23435520 GTTGGCTTAG
23435530 GCATACGGAGTTCATT-CCATATCTAA
1 GCAT-CGGAGTTCATTCCCA-ATCTAA
23435556 GCATGCGGAGTTCATTCCCAATCTAA
1 GCAT-CGGAGTTCATTCCCAATCTAA
23435582 G-ATCGGAGT
1 GCATCGGAGT
23435591 GGACCAAGGT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
24 6 0.18
25 2 0.06
26 22 0.67
27 3 0.09
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (25 bp):
GCATCGGAGTTCATTCCCAATCTAA
Found at i:23436044 original size:159 final size:158
Alignment explanation
Indices: 23435826--23436283 Score: 433
Period size: 159 Copynumber: 2.9 Consensus size: 158
23435816 CAGCACGTAG
* * * * * *
23435826 GGGGGACTGGGCCGATCCCCGGCTTGCGCATTTTGCCTTTTCGACAAGCTGAGCACCCGCACGC-
1 GGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATAGGCTGAGCACCCGCACGCT
* *
23435890 CTGTTTCATGGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
66 C-GTTTCATGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
** *
23435955 GTTGTGGCAGCGGGACCAACAGCACGCAAA
130 GTTGTGGCAGCAAGACCAACAGCACAC-AA
* * * **
23435985 GGGGGACCGAGCCGATTCCCGACTTGCGCATTATGCCTCTTCGATAGGCTCAGTGCCCGCACGCT
1 GGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATAGGCTGAGCACCCGCACGCT
** * * ** * *
23436050 CGTTTTGTGGGTT-GACTTATGCATATGGAGTTCATTCCCA-GTCTAAG-ATCGGACCGGACTG-
66 CGTTTCATGGGTTGGA-TTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGA
* * *
23436111 GTGGTTGTGGCAGCAAGATCGACAGCACACAG
128 G-GGTTGTGGCAGCAAGACCAACAGCACACAA
* * * * * * **
23436143 GGGGGAACGGGTCGATCCCCAACTTGCGCATTCTGCCTCTCCGATCGATTGAGCACCCGCACGCT
1 GGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATAGGCTGAGCACCCGCACGCT
* * * * * *
23436208 CGTTCCATGGGTTGGCTTAGGCATACAGAGTTTATTCCAAT-TCTAAGCCCCAGTCGGATCGAGG
66 CGTTTCATGGGTTGGATTAGGCATACGGAGTTCATTCC-ATGTCTAAGCCCCAGCCGGACCGAGG
*
23436272 GTTGTGGTAGCA
130 GTTGTGGCAGCA
23436284 GGATCGACAG
Statistics
Matches: 235, Mismatches: 54, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 108 0.46
159 121 0.51
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATAGGCTGAGCACCCGCACGCT
CGTTTCATGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
TTGTGGCAGCAAGACCAACAGCACACAA
Found at i:23436232 original size:158 final size:157
Alignment explanation
Indices: 23435753--23436246 Score: 460
Period size: 158 Copynumber: 3.1 Consensus size: 157
23435743 CCCAGTCTAA
* * * * *
23435753 GCATATGGAGTTTATTACCAGTTTAAGATCGGACCGGTCCGAGGGTTGCGACAG-AAGGATCGAC
1 GCATATGGAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAA-GATCGAC
* * * * *
23435817 AGCACGTAGGGGGG-ACTGGGCCGATCCCCGGCTTGCGCATTTTGCCTTTTCGA-CAAGCTGAGC
64 AGCACGCAGGGGGGAAC-GGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCGA-CTGAGC
*
23435880 ACCCGCACGC-CTGTTTCATGGGTTGGATTAG
127 ACCCGCACGCTC-GTTTCATGGGTTGGCTTAG
* * ** * ** * *
23435911 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCAAC
1 GCATATGGAGTTCATTCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGTGGCAGCAAGATCGAC
* * * * * * * **
23435975 AGCACGCAAAGGGGGACCGAGCCGATTCCCGACTTGCGCATTATGCCTCTTCGATAGGCTCAGTG
64 AGCACGC-AGGGGGGAACGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCGACTGAGCA
** * *
23436040 CCCGCACGCTCGTTTTGTGGGTTGACTTAT
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
23436070 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTG-GTGGTTGTGGCAGCAAGATCGAC
1 GCATATGGAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAG-GGTTGTGGCAGCAAGATCGAC
* * * * * *
23436134 AGCACACAGGGGGGAACGGGTCGATCCCCAACTTGCGCATTCTGCCTCTCCGATCGATTGAGCAC
64 AGCACGCAGGGGGGAACGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCGACTGAGCAC
*
23436199 CCGCACGCTCGTTCCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
** *
23436228 GCATACAGAGTTTATTCCA
1 GCATATGGAGTTCATTCCA
23436247 ATTCTAAGCC
Statistics
Matches: 260, Mismatches: 66, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
157 8 0.03
158 130 0.50
159 115 0.44
160 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATATGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGATCGACAG
CACGCAGGGGGGAACGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCGACTGAGCACCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:23436435 original size:26 final size:26
Alignment explanation
Indices: 23436399--23436451 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23436389 GTTGACTTAG
23436399 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
23436425 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
23436451 G
1 G
23436452 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23437389 original size:26 final size:26
Alignment explanation
Indices: 23437360--23437412 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23437350 GTTGGCTTAG
23437360 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23437386 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23437412 G
1 G
23437413 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23437593 original size:26 final size:26
Alignment explanation
Indices: 23437557--23437609 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23437547 GTTGGCTTAG
23437557 GCATACAGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCCT-AGTCTAA
*
23437583 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
23437609 G
1 G
23437610 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:23438021 original size:26 final size:26
Alignment explanation
Indices: 23437991--23438043 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23437981 GTTGGCTTAG
*
23437991 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
23438017 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
23438043 G
1 G
23438044 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:23438217 original size:26 final size:26
Alignment explanation
Indices: 23438188--23438238 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23438178 TTGGCTAAGG
23438188 CATACGGAGTTCATT-CCATGTCTAAC
1 CATACGGAGTTCATTCCCA-GTCTAAC
23438214 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
23438239 GATCGGACCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:23438300 original size:196 final size:196
Alignment explanation
Indices: 23437948--23438408 Score: 597
Period size: 196 Copynumber: 2.4 Consensus size: 196
23437938 ACCGAATCGA
23437948 GGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
1 GGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* *
23438013 CTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGACCGGACCAAGGGTTGTGACAGAGGGACC
66 CTAACCATACGGAGTTCATTCCAAGTCTAAGATCGGACCGGACCAAGGGTTGTGACACAGGGACC
* * * *
23438078 AGCAGCAGGATCGACAGCATGCAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCC-TCT
131 AGCAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCTGACTTACACATTCTGCCTTCT
23438142 C
196 C
* * * * *
23438143 TGGTCGACTGAGTGCCCGTACGCTAGTTTCGTGGGTTGGCTAAGGCATACGGAGTTCATTCCATG
1 -GGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* ****
23438208 TCTAACCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGGTTGAGGGTTGTGGTA-ACA-GG
65 TCTAACCATACGGAGTTCATTCCAAGTCTAAGATCGGACCGGACCAAGGGTTGT-G-ACACAGGG
* * ** * *
23438271 ACCAGCAGTAGGATTGGTAGCACGCAGGGGGGATCGAGCCGATCCCTGACTTCCACATTCTGTCT
128 ACCAGCAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCTGACTTACACATTCTGCCT
*
23438336 TTTC
193 TCTC
* * * * * *
23438340 GGTCGGCTGAGCACCCGCACACTCGTTTCCTAGGTTGGTTTAGTG-ATACGGAGTTCATTCCATG
1 GGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG-GCATACGGAGTTCATTCCATG
23438404 TCTAA
65 TCTAA
23438409 GCCACAGCCG
Statistics
Matches: 228, Mismatches: 33, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
196 220 0.96
197 7 0.03
198 1 0.00
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (196 bp):
GGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAACCATACGGAGTTCATTCCAAGTCTAAGATCGGACCGGACCAAGGGTTGTGACACAGGGACC
AGCAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCTGACTTACACATTCTGCCTTCT
C
Found at i:23438596 original size:26 final size:26
Alignment explanation
Indices: 23438567--23438619 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23438557 GTTGACTTAG
23438567 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23438593 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23438619 G
1 G
23438620 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23438947 original size:159 final size:157
Alignment explanation
Indices: 23438593--23438986 Score: 368
Period size: 159 Copynumber: 2.5 Consensus size: 157
23438583 CCCAGTCTAA
* * * *
23438593 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGATCGAGGGTTGCGATAGTAGGATCGATA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * *
23438658 GCACGCAAGGGGGATAGAGTCGATCCCCGGCTTGCCCATTCTGCCTCTCCAACCGGCTAAGCACC
65 ACACGCAAGGGGGACAGAGCCGATCCCCGGCCTACCCATTATGCATCTCCAACCGGCTAAGCACC
* * *
23438723 TGTACACCCGTTTCATGGGTTGGCTTAG
130 CGAACACCCGTTTCATGGGTTGACTTAG
* * ** * * *
23438751 GGATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGATCGAGGGTTGTGGCAGCGGGATCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCAGATCGAGGGTTGCGACAGCAGGATCGAC
* ** * *
23438815 AACACGCAGAGGGGGACCAG-GCCGATCTCCGGCCTACGTATTATGCATCTCCGATCGGCTTAA-
64 AACACGCA-AGGGGGA-CAGAGCCGATCCCCGGCCTACCCATTATGCATCTCCAACCGGC-TAAG
* *
23438878 CACCCGAACGCTCGTTTCATGGGTTGACTTAG
126 CACCCGAACACCCGTTTCATGGGTTGACTTAG
* * **
23438910 GCATACGGAGTGCATTCTCAGTCTAAGATCAGACCAGA-CTGAGGGTTAC-AGCATTAGGATCGA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGACCAGATC-GAGGGTTGCGA-CAGCAGGATCGA
*
23438973 CAGCACG-AAGGGGG
63 CAACACGCAAGGGGG
23438987 GATCGGTTCG
Statistics
Matches: 187, Mismatches: 40, Indels: 19
0.76 0.16 0.08
Matches are distributed among these distances:
157 9 0.05
158 57 0.30
159 114 0.61
160 7 0.04
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATCGACAA
CACGCAAGGGGGACAGAGCCGATCCCCGGCCTACCCATTATGCATCTCCAACCGGCTAAGCACCC
GAACACCCGTTTCATGGGTTGACTTAG
Found at i:23439106 original size:26 final size:26
Alignment explanation
Indices: 23439075--23439146 Score: 119
Period size: 26 Copynumber: 2.8 Consensus size: 26
23439065 TAGGCTTACG
23439075 GAGTTCATTCCATGTCTAAGCATATA
1 GAGTTCATTCCATGTCTAAGCATATA
*
23439101 GAGTTCATTCCATGTCTAAGCATATG
1 GAGTTCATTCCATGTCTAAGCATATA
23439127 GAGTTCATTCCCA-GTCTAAG
1 GAGTTCATT-CCATGTCTAAG
23439147 ATTGGACCGA
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 41 0.93
27 3 0.07
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (26 bp):
GAGTTCATTCCATGTCTAAGCATATA
Found at i:23439500 original size:184 final size:185
Alignment explanation
Indices: 23439182--23439882 Score: 662
Period size: 184 Copynumber: 3.7 Consensus size: 185
23439172 AGTAGGACCA
* * * * * * * *
23439182 ACAGCAGGGTCGACAGCACGTAGGGGGAATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC
1 ACAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCTGACTTGCGCATTCTACCTCTCC
* * * * *
23439247 -GATCGACTGAGCGCCCGCACGCTCGTTT-AGTGGGCTGACTTAGGCATACGGAGTTC-TTCCCT
66 GGCTCGGCTGAGCGCCCGCACGCCCGTTTCA-TGGGTTGACTTAGGCATACGGAGTTCATTCCAT
** *
23439309 AGTCTAAGCATACAAAGTTCATTCCCAGTGTAAGATTGAATCAGACCGAGGGTTGTG
130 -GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAATCAGACCGAGGGTTGTG
* * * * * *
23439366 ACAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCAATCCCTGGCTTGCACATTCTACCTCTTC
1 ACAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCTGACTTGCGCATTCTACCTCTCC
* * * * * *
23439431 GGCT-GGCTGAGCGCCTGCACGCCCATTTCATGGGTTGGCTTAGGCGTAGGGAGTTCATTTCATG
66 GGCTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATG
* * * * *
23439495 TCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGTG
131 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAATCAGACCGAGGGTTGTG
* **
23439550 ACAGTAGGACCAGTAGCAGGATCGGTAGCACGCAGGAGGGGACCAGGTTGATCCCTGACTTGCGC
1 ACAGCAGG---A-T--C--GA-C---AGCACGCAGG-GGGGACCAGGCCGATCCCTGACTTGCGC
* *
23439615 ATTCTTCCTCTCCGGCT-GGCTGAGCGCCCGCACGCTCC-TTTCGTGGGTTGACTTAGGCATACG
53 ATTCTACCTCTCCGGCTCGGCTGAGCGCCCGCACGC-CCGTTTCATGGGTTGACTTAGGCATACG
* *** * * *
23439678 GAGTTCATCCCCCATCTAAGCTTACGGAGTTCATTCCTAGTCTAAGA-TCAGATCAGACCGAGGG
117 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGA-ATCAGACCGAGGG
*
23439742 TTGCG
181 TTGTG
* * * * * * *
23439747 ATAGTAGGATCGACAGAACGCAGGGGGGACCAAGCCGATCCTTGACTTGCGTATTCTACCTCCCC
1 ACAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCTGACTTGCGCATTCTACCTCTCC
* * * * * *
23439812 GG-TCGGCTGAGCGCCCGTACACCCGTTTCGTGGGTTGGCTTAGGCCTAGGGAGTTCATTCCATG
66 GGCTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATG
23439876 TCTAAGC
131 TCTAAGC
23439883 CCCAGCTAGA
Statistics
Matches: 421, Mismatches: 76, Indels: 40
0.78 0.14 0.07
Matches are distributed among these distances:
183 3 0.01
184 243 0.58
185 16 0.04
187 1 0.00
188 2 0.00
189 2 0.00
190 1 0.00
191 1 0.00
192 2 0.00
193 2 0.00
194 1 0.00
196 11 0.03
197 134 0.32
198 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (185 bp):
ACAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCTGACTTGCGCATTCTACCTCTCC
GGCTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATG
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAATCAGACCGAGGGTTGTG
Found at i:23439709 original size:197 final size:196
Alignment explanation
Indices: 23439368--23439869 Score: 485
Period size: 197 Copynumber: 2.6 Consensus size: 196
23439358 GGGTTGTGAC
* * * *
23439368 AGCAGGATCGACAGCACGCAGGGGGGATCGGGCCAATCCCTGGCTTGCACATTCTACCTCTTCGG
1 AGCAGGATCGACAGCACGCAGGGGGGACCAGGCCAATCCCTGACTTGCACATTCTACCTCTCCGG
* * * * ** **
23439433 CTGGCTGAGCGCCTGCACGCCCATTTCATGGGTTGGCTTAGGCGTAGGGAGTTCATTTCATGTCT
66 CTGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCACATCT
*
23439498 AAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGTGACAGTAGGACCAG
131 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGTGACAGTAGGACCAG
23439563 T
196 T
** *** * *
23439564 AGCAGGATCGGTAGCACGCAGGAGGGGACCAGGTTGATCCCTGACTTGCGCATTCTTCCTCTCCG
1 AGCAGGATCGACAGCACGCAGG-GGGGACCAGGCCAATCCCTGACTTGCACATTCTACCTCTCCG
* *
23439629 GCTGGCTGAGCGCCCGCACGCTCC-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCCAT
65 GCTGGCTGAGCGCCCGCACGC-CCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCACAT
* * * * *
23439693 CTAAGCTTACGGAGTTCATTCCTAGTCTAAGATC-AGATCAGACCGAGGG-T-TG-C-----G--
129 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACTGAGGGTTGTGACAGTAGGAC
23439747 -A-T
193 CAGT
* * * * * ** *
23439749 AGTAGGATCGACAGAACGCAGGGGGGACCAAGCCGATCCTTGACTTGCGTATTCTACCTCCCCGG
1 AGCAGGATCGACAGCACGCAGGGGGGACCAGGCCAATCCCTGACTTGCACATTCTACCTCTCCGG
* * * * * * *
23439814 -TCGGCTGAGCGCCCGTACACCCGTTTCGTGGGTTGGCTTAGGCCTAGGGAGTTCAT
66 CT-GGCTGAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
23439870 TCCATGTCTA
Statistics
Matches: 258, Mismatches: 43, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
183 3 0.01
184 82 0.32
185 19 0.07
186 1 0.00
189 1 0.00
194 1 0.00
195 2 0.01
196 22 0.09
197 125 0.48
198 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (196 bp):
AGCAGGATCGACAGCACGCAGGGGGGACCAGGCCAATCCCTGACTTGCACATTCTACCTCTCCGG
CTGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCACATCT
AAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGTGACAGTAGGACCAG
T
Found at i:23439805 original size:381 final size:380
Alignment explanation
Indices: 23439101--23439882 Score: 1005
Period size: 381 Copynumber: 2.1 Consensus size: 380
23439091 TAAGCATATA
* * *
23439101 GAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGAATTGAGGGT
1 GAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGT
** * * * *
23439166 TCCGGTAGTAGGACCAACAGCAGGGTCGACAGCACGTAGGGGGAATCAGGTCGATCCCCGGCTTG
66 TCCGACAGTAGGACCAACAGCAGGATCGACAGCACGCAGGGGGAACCAGGTCGATCCCCGACTTG
*
23439231 CGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTAGTGGGCTGACTTAGGCATAC
131 CGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCCTTTAGTGGGCTGACTTAGGCATAC
* * * *
23439296 GGAGTTCTTCCCTAGTCTAAGCATACAAAGTTCATTCCCAGTGTAAGATTGAATCAGACCGAGGG
196 GGAGTTCTCCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATAGAATCAGACCGAGGG
* * * ** *
23439361 TTGTGACAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCAATCCCTGGCTTGCACATTCTACC
261 TTGCGACAGCAGGATCGACAGAACGCAGGGGGGACCAAGCCAATCCCTGACTTGCACATTCTACC
** * * *
23439426 TCTTCGG-CTGGCTGAGCGCCTGCACGCCCATTTCATGGGTTGGCTTAGGCGTAGG
326 TCCCCGGTC-GGCTGAGCGCCCGCACACCCATTTCATGGGTTGGCTTAGGCCTAGG
* *
23439481 GAGTTCATTTCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGT
1 GAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGT
** ** ** * * *
23439546 TGTGACAGTAGGACCAGTAGCAGGATCGGTAGCACGCAGGAGGGGACCAGGTTGATCCCTGACTT
66 TCCGACAGTAGGACCAACAGCAGGATCGACAGCACGCAGG-GGGAACCAGGTCGATCCCCGACTT
* * * * *
23439611 GCGCATTCTTCCTCTCCG-GCTGGCTGAGCGCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCAT
130 GCGCATTCTGCCTCTCCGATC-GACTGAGCGCCCGCACGCTCCTTTAGTGGGCTGACTTAGGCAT
* ** *
23439675 ACGGAGTTCATCCCCCA-TCTAAGCTTACGGAGTTCATTCCTAGTCTAAGATCAG-ATCAGACCG
194 ACGGAGTTC-TCCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGAT-AGAATCAGACCG
* * * * **
23439738 AGGGTTGCGATAGTAGGATCGACAGAACGCAGGGGGGACCAAGCCGATCCTTGACTTGCGTATTC
257 AGGGTTGCGACAGCAGGATCGACAGAACGCAGGGGGGACCAAGCCAATCCCTGACTTGCACATTC
* * *
23439803 TACCTCCCCGGTCGGCTGAGCGCCCGTACACCCGTTTCGTGGGTTGGCTTAGGCCTAGG
322 TACCTCCCCGGTCGGCTGAGCGCCCGCACACCCATTTCATGGGTTGGCTTAGGCCTAGG
23439862 GAGTTCATTCCATGTCTAAGC
1 GAGTTCATTCCATGTCTAAGC
23439883 CCCAGCTAGA
Statistics
Matches: 342, Mismatches: 55, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
380 91 0.27
381 244 0.71
382 7 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (380 bp):
GAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGT
TCCGACAGTAGGACCAACAGCAGGATCGACAGCACGCAGGGGGAACCAGGTCGATCCCCGACTTG
CGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCCTTTAGTGGGCTGACTTAGGCATAC
GGAGTTCTCCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATAGAATCAGACCGAGGG
TTGCGACAGCAGGATCGACAGAACGCAGGGGGGACCAAGCCAATCCCTGACTTGCACATTCTACC
TCCCCGGTCGGCTGAGCGCCCGCACACCCATTTCATGGGTTGGCTTAGGCCTAGG
Found at i:23440697 original size:26 final size:26
Alignment explanation
Indices: 23440668--23440720 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
23440658 GTTGACTTAG
23440668 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
23440694 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
23440720 G
1 G
23440721 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:23441005 original size:158 final size:157
Alignment explanation
Indices: 23440694--23441026 Score: 416
Period size: 158 Copynumber: 2.1 Consensus size: 157
23440684 CCCAGTCTAA
* * * * * * *
23440694 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCGGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAACAGGATCGACA
* * * * **
23440759 GCACGTAGTGGGAACGGGTCGATCTCCGGCTTATGCATTCTACCTCTTCGATCGATTGAGTGCCC
66 GCAAGTAGGGGGAACGGGTCGATCTCCGGCTTACGCATTCTACCTCTTCGATCGACTGAGCACCC
23440824 GCACGCCCATTTCATGGGTTGGCTTAG
131 GCACGCCCATTTCATGGGTTGGCTTAG
* * *
23440851 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACTGAGGGTTGCGGCAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAACAGGATCGACA
* * * *
23440916 GCAAGTAGGGGGGACTGGGTCGATC-CTCGGCTTACGCATTCTGCCTTTTCGGTCGACTGAGCAC
66 GCAAGTAGGGGGAAC-GGGTCGATCTC-CGGCTTACGCATTCTACCTCTTCGATCGACTGAGCAC
** *
23440980 CCGCACGTTCGTTTCATGGGTTGGCTTAG
129 CCGCACGCCCATTTCATGGGTTGGCTTAG
* *
23441009 GCATACAGAGTTTATTCC
1 GCATACGGAGTTCATTCC
23441027 ATGCCTAAGC
Statistics
Matches: 149, Mismatches: 25, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
157 68 0.46
158 81 0.54
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAACAGGATCGACA
GCAAGTAGGGGGAACGGGTCGATCTCCGGCTTACGCATTCTACCTCTTCGATCGACTGAGCACCC
GCACGCCCATTTCATGGGTTGGCTTAG
Found at i:23441113 original size:26 final size:26
Alignment explanation
Indices: 23441009--23441104 Score: 165
Period size: 26 Copynumber: 3.7 Consensus size: 26
23440999 GTTGGCTTAG
* *
23441009 GCATACAGAGTTTATTCCATGCCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
23441035 GCATACGGAGTTCATTCCATGCCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
23441061 GCATACGGAGTTCATTCCATGCCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
*
23441087 GCATATGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
23441105 CAGTCTAAGA
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 67 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:23441696 original size:158 final size:159
Alignment explanation
Indices: 23441523--23441929 Score: 406
Period size: 158 Copynumber: 2.6 Consensus size: 159
23441513 CGATCCCCTG
* * *
23441523 CTTGCGCACTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATTGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGC
* * * * ***
23441588 ATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCAAACTGAGGGTTGTGGCAGCGGGACCGGTAG
66 ATACGGAGTTCATTCCATGTCTAAGCCC-AGACCAAACCGAGGGTTGCGGCAGCAGGACCAACAG
* *
23441652 CACAT-AGAGGGGATCGGGTCGATCCTCGA
130 CACATGAGAGGGGATCGAGACGATCCTCGA
* * * * * * * *
23441681 CTTGCGCATTATGCCTCCCTGGCCGACTCAGCCCCCGAACGCTCGTTTCGTGGGTTGACATAGGC
1 CTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGC
* ** * * ** * *
23441746 ATATGGAGTTCATTCCA-GTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGTAGGATCAACAGC
66 ATACGGAGTTCATTCCATGTCTAAGCCCAGACCAAACCGAGGGTTGCGGCAGCAGGACCAACAGC
* * * * *
23441810 ACGTGGGAGGGGATCGAGACGGTCTTCGG
131 ACATGAGAGGGGATCGAGACGATCCTCGA
* * * * * * * *
23441839 TTTGCGCATTCTGCCTCTCCGACTGGCTGAGTGCCCGTACGCTCATTTCATGGGTTAGCTTAGGC
1 CTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGC
23441904 ATACGGAGTTCATTCCATGTCTAAGC
66 ATACGGAGTTCATTCCATGTCTAAGC
23441930 ATACAGAGTT
Statistics
Matches: 195, Mismatches: 51, Indels: 5
0.78 0.20 0.02
Matches are distributed among these distances:
156 1 0.01
157 34 0.17
158 153 0.78
159 7 0.04
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (159 bp):
CTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCCCAGACCAAACCGAGGGTTGCGGCAGCAGGACCAACAGC
ACATGAGAGGGGATCGAGACGATCCTCGA
Found at i:23441932 original size:26 final size:26
Alignment explanation
Indices: 23441902--23441954 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23441892 GTTAGCTTAG
*
23441902 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
23441928 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
23441954 G
1 G
23441955 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:23442431 original size:159 final size:159
Alignment explanation
Indices: 23442143--23442802 Score: 615
Period size: 159 Copynumber: 4.1 Consensus size: 159
23442133 CTAAGCTTAC
** * * *
23442143 GGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTT-TCGACAGCAAGATCGGTAGCA
1 GGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGT-GGCAGCGAGATCGGAAGCA
*
23442205 CGCAG-GGGGGATCGGGTCGATCC-CTGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGTGCCC
63 CGCAGAGGGGGATCGGGTCGATCCTC-GGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCGCCC
** *
23442268 GCACGC-CTGTTTCAAGGGTTGGCTTAGGCCTAG
127 GCACGCTC-GTTTCGTGGGTTGGCTTAGGCATAG
* * * *
23442301 GGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACAC
1 GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGAGATCGGAAGCACGC
* * * *
23442366 AGAGGGGGATCAGG-CTGATCCTCAGCTTGCGCATTCTGTCTCTCTGGCCGGCTGAGCGCCCGCA
66 AGAGGGGGATCGGGTC-GATCCTCGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCGCCCGCA
23442430 CGCTCGTTTCGTGGGTTGGCTTAGGCATAG
130 CGCTCGTTTCGTGGGTTGGCTTAGGCATAG
* * **
23442460 GGAGTTCATTCCATGTCTAAGCCCTAGCCGGATTGAGGGTTGTGGCAGCGAGATCGGAAGCACGC
1 GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGAGATCGGAAGCACGC
* * * * * *
23442525 AGAGGGGGATCGGGTCGATCCTCGGCTTACGCATTATGCCTCT-TCGGCTGGTTCAGCACCCGAA
66 AGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCT-GGCCGGTTGAGCGCCCGCA
* *
23442589 CGCTCGTTTCGTGGGTTGACTTAGGCATAT
130 CGCTCGTTTCGTGGGTTGGCTTAGGCATAG
**** ** * * * * *
23442619 GGAGTTCATTCCCA-GTCTAAGTAGGATCGACTGGACCGAGGGCTGCGGTAG-TAGGATC-AACA
1 GGAGTTCATT-CCATGTCTAAGCCCCA--G-CCAGACCGAGGGTTGTGGCAGCGA-GATCGGA-A
* * * * * * * * * ** *
23442681 GTATG-AGGGAGGGGATCAGGTCGGTCCTCGACTTGCGCATTCTACCTCTCCGGCTGACTGAGAG
60 GCACGCAGAG-GGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCG
* *
23442745 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAC
124 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAG
*
23442781 GGAGTTCATTTCATGTCTAAGC
1 GGAGTTCATTCCATGTCTAAGC
23442803 ATATGGAGTT
Statistics
Matches: 415, Mismatches: 69, Indels: 32
0.80 0.13 0.06
Matches are distributed among these distances:
157 3 0.01
158 51 0.12
159 234 0.56
160 6 0.01
161 8 0.02
162 113 0.27
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (159 bp):
GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGAGATCGGAAGCACGC
AGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGGCTTAGGCATAG
Found at i:23442824 original size:26 final size:26
Alignment explanation
Indices: 23442775--23442827 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23442765 GTTGGCTTAG
*
23442775 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
23442801 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
23442827 G
1 G
23442828 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:23442947 original size:197 final size:185
Alignment explanation
Indices: 23442613--23443183 Score: 533
Period size: 197 Copynumber: 3.0 Consensus size: 185
23442603 GTTGACTTAG
* ** * ** *
23442613 GCATATGGAGTTCATTCCCAGTCTAAGTAGGATC-GACTGGACCGAGGGCTGCGGTAGTAGGATC
1 GCATACGGAGTTCATTCCCAGTCT-A--A-GATCAGACCAGACCGAGGGTTGCGACAATAGGATC
* * * * *
23442677 AACAGTATG-AGGGAGGGGATCAGGTCGGT-CCTCGACTTGCGCATTCTACCTCTCCGGCTGACT
62 AACAGAACGCA-GGAGGGGACCAGGTCGATCCCT-GACTTGCGCATTCTACCTCTCCGGCTGGCT
* *
23442740 GAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAA
125 GAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
23442801 GCATATGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACTGAGGGTTGTGACAATAGGACCAGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGACAATAGG---A-T
* * * *
23442865 AGCAGGATCGGTAGCACGTAGGAGGGGACCAGGTTGATCCCTGACTTGCGCATTCTTCCTCTCCG
61 --CA--A-C---AGAACGCAGGAGGGGACCAGGTCGATCCCTGACTTGCGCATTCTACCTCTCCG
* * * * ***
23442930 GCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATCCCCCATC
118 GCTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
23442995 TAA
183 TAA
* * * *
23442998 GCTTACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGTAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAATAGGATCAACA
* * * * *
23443063 GAACGCAGG-GGGGACCAGGCCGATCCCCGACTTGCGTATTCTGCCTCCCCGG-TCGGCTGAGCG
66 GAACGCAGGAGGGGACCAGGTCGATCCCTGACTTGCGCATTCTACCTCTCCGGCT-GGCTGAGCG
* * * * *
23443126 CCCGTACACCCATTTCGTGGGTTGGCTTAGGCCTAGGGAGTTCATTCCATGTCTAA
130 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
23443182 GC
1 GC
23443184 CCCAGCTAGA
Statistics
Matches: 315, Mismatches: 51, Indels: 38
0.78 0.13 0.09
Matches are distributed among these distances:
183 1 0.00
184 97 0.31
185 28 0.09
187 1 0.00
188 26 0.08
189 2 0.01
191 4 0.01
193 2 0.01
194 2 0.01
197 147 0.47
198 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAATAGGATCAACA
GAACGCAGGAGGGGACCAGGTCGATCCCTGACTTGCGCATTCTACCTCTCCGGCTGGCTGAGCGC
CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:23443234 original size:861 final size:861
Alignment explanation
Indices: 23441491--23443341 Score: 2374
Period size: 861 Copynumber: 2.1 Consensus size: 861
23441481 GTAAGATCGG
* ** * * * *
23441491 CAGCACGCA-AGGGGGACTGGGCCGATCCCCTGCTTGCGCACTCTGCCTCTCTGGCCGGCTGAGC
1 CAGCACACAGAGGGGGACCAGGCCTATCCTCAGCTTGCGCATTCTG-CTCTCTGGCCGGCTGAGC
*
23441555 GCCCGCACGCTCGTTTCATTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGC
65 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGC
* * * *
23441620 CAAACTGAGGGTTGTGGCAGCGGGACCGGTAGCACATAGAGGGGATCGGGTCGATCCTCGACTTG
130 CAAACTGAGGGTTGTGGCAGCGAGACCGGAAGCACACAGAGGGGATCGGGTCGATCCTCGACTTA
*
23441685 CGCATTATGCCTCCCTGGCCGACTCAGCCCCCGAACGCTCGTTTCGTGGGTTGACATAGGCATAT
195 CGCATTATGCCTCCCTGGCCGACTCAGCACCCGAACGCTCGTTTCGTGGGTTGACATAGGCATAT
* * *
23441750 GGAGTTCATTCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGTAGGATCAACAGCACGTG
260 GGAGTTCATTCCAGTCTAAGATAGGATCGGACCGAGGGCTGCGGCAGTAGGATCAACAGCACGAG
* ** * * * *
23441815 GGAGGGGATCGAGACGGTCTTCGGTTTGCGCATTCTGCCTCTCCGACTGGCTGAGTGCCCGTACG
325 GGAGGGGATCGAGACGGTCCTCGACTTGCGCATTCTACCTCTCCGACTGACTGAGAGCCCGCACG
23441880 CTCATTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTC
390 CTCATTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTC
* *
23441945 CCAGTCTAAGATCAGACTAGACCAAGGGTTGCGACAGTAGGACCAGTAGCAGGATCGACAGCACG
455 CCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAATAGGACCAGTAGCAGGATCGACAGCACG
* *
23442010 CATGGGAGGATCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTTCGGCTGGCCTCTCCAGTCCA
520 CATGGGAGGACCAGGTCGATCCTCGACTTGCGCATTCTGCCTCTTC-GCTGG-C-CT-C-GTCCA
*
23442075 TTGAGCACCCGCACGCTCCTTTCATGGGTTGACTTAGGCATAGGAGTTCATCCCCAGTCTAAGCT
580 -TGAGCACCCGCACGCTCCTTTCATGGGCTGACTTAGGCATAGGAGTTCATCCCCAGTCTAAGCT
* *** *
23442140 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTTCGACAGCAAGATCGGTAGCA
644 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCAACAGAA
* * * * * * * * *
23442205 CGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGTGCCCGC
709 CGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCCCCGGCCGGCTGAGCGCCCGC
* **
23442270 ACGCCTGTTTCAAGGGTTGGCTTAGGCCTAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACC
774 ACACCCATTTCAAGGGTTGGCTTAGGCCTAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACC
* **
23442335 GAGGGTTGTGGCAGCGGGATCGG
839 GAGGGTTGTGGCAGCGGGACCAA
*
23442358 CAGCACACAGAGGGGGATCAGG-CTGATCCTCAGCTTGCGCATTCTGTCTCTCTGGCCGGCTGAG
1 CAGCACACAGAGGGGGACCAGGCCT-ATCCTCAGCTTGCGCATTCTG-CTCTCTGGCCGGCTGAG
*
23442422 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG
64 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG
** * * * *
23442487 CCGGATTGAGGGTTGTGGCAGCGAGATCGGAAGCACGCAGAGGGGGATCGGGTCGATCCTCGGCT
129 CCAAACTGAGGGTTGTGGCAGCGAGACCGGAAGCACACAGA-GGGGATCGGGTCGATCCTCGACT
* * ** *
23442552 TACGCATTATGCCT-CTTCGGCTGGTTCAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCA
193 TACGCATTATGCCTCCCT-GGCCGACTCAGCACCCGAACGCTCGTTTCGTGGGTTGACATAGGCA
*
23442616 TATGGAGTTCATTCCCAGTCTAAG-TAGGATCGACTGGACCGAGGGCTGCGGTAGTAGGATCAAC
257 TATGGAGTTCATT-CCAGTCTAAGATAGGAT---C-GGACCGAGGGCTGCGGCAGTAGGATCAAC
* * * *
23442680 AGTATGAGGGAGGGGATC-AGGTCGGTCCTCGACTTGCGCATTCTACCTCTCCGGCTGACTGAGA
317 AGCACGAGGGAGGGGATCGA-GACGGTCCTCGACTTGCGCATTCTACCTCTCCGACTGACTGAGA
* * * **
23442744 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCATATGG
381 GCCCGCACGCTCATTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAG
* ** *
23442809 AGTTCATTCCCAGTCTAAGATC-GAACCGGACTGAGGGTTGTGACAATAGGACCAGTAGCAGGAT
446 AGTTCATTCCCAGTCTAAGATCAG-ACCAGACCAAGGGTTGCGACAATAGGACCAGTAGCAGGAT
** * * * *
23442873 CGGTAGCACGTA-GGAGGGGACCAGGTTGATCC-CTGACTTGCGCATTCTTCCTC-TC-C-GG-C
510 CGACAGCACGCATGG-GAGGACCAGGTCGATCCTC-GACTTGCGCATTCTGCCTCTTCGCTGGCC
* * * *
23442932 T-G-GC-TGAGCGCCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATCCCCCA-
573 TCGTCCATGAGCACCCGCACGCTCCTTTCATGGGCTGACTTAGGCATA-GGAGTTCAT-CCCCAG
* * * *
23442993 TCTAAGCTTACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGTAGGAT
636 TCTAAGCTTACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGAT
* *
23443058 CAACAGAACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGTATTCTGCCTCCCCGGTCGGCTGA
701 CAACAGAACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCCCCGGCCGGCTGA
* **
23443123 GCGCCCGTACACCCATTTCGTGGGTTGGCTTAGGCCTAGGGAGTTCATTCCATGTCTAAGCCCCA
766 GCGCCCGCACACCCATTTCAAGGGTTGGCTTAGGCCTAGGGAGTTCATTCCATGTCTAAGCCCCA
23443188 G-CTAGACCGAGGGTTGTGGCAGCGGGACCAA
831 GTC-AGACCGAGGGTTGTGGCAGCGGGACCAA
* * * * ** *
23443219 CAGGACACAGAGGGGGACCGGGCCTATCCTCAGCTTACGCATTACAGCTCTCCAAG-CGGCTCAG
1 CAGCACACAGAGGGGGACCAGGCCTATCCTCAGCTTGCGCATT-CTGCTCT-CTGGCCGGCTGAG
* * * *
23443283 CGCTCGCACGCACATTTCATGGGTTGAG-TTAGGCATACGGAGTTCATTCCCA-GTCTAAG
64 CGCCCGCACGCTCGTTTCATGGGTTG-GCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG
23443342 ATCGGATCAG
Statistics
Matches: 855, Mismatches: 108, Indels: 48
0.85 0.11 0.05
Matches are distributed among these distances:
860 38 0.04
861 299 0.35
862 16 0.02
863 1 0.00
866 2 0.00
867 9 0.01
868 142 0.17
869 96 0.11
870 11 0.01
872 8 0.01
873 233 0.27
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (861 bp):
CAGCACACAGAGGGGGACCAGGCCTATCCTCAGCTTGCGCATTCTGCTCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCC
AAACTGAGGGTTGTGGCAGCGAGACCGGAAGCACACAGAGGGGATCGGGTCGATCCTCGACTTAC
GCATTATGCCTCCCTGGCCGACTCAGCACCCGAACGCTCGTTTCGTGGGTTGACATAGGCATATG
GAGTTCATTCCAGTCTAAGATAGGATCGGACCGAGGGCTGCGGCAGTAGGATCAACAGCACGAGG
GAGGGGATCGAGACGGTCCTCGACTTGCGCATTCTACCTCTCCGACTGACTGAGAGCCCGCACGC
TCATTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCC
CAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAATAGGACCAGTAGCAGGATCGACAGCACGC
ATGGGAGGACCAGGTCGATCCTCGACTTGCGCATTCTGCCTCTTCGCTGGCCTCGTCCATGAGCA
CCCGCACGCTCCTTTCATGGGCTGACTTAGGCATAGGAGTTCATCCCCAGTCTAAGCTTACGGAG
TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCAACAGAACGCAGGG
GGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCCCCGGCCGGCTGAGCGCCCGCACACCCA
TTTCAAGGGTTGGCTTAGGCCTAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTT
GTGGCAGCGGGACCAA
Found at i:23443857 original size:26 final size:26
Alignment explanation
Indices: 23443827--23443880 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
23443817 TGGGTTGACT
*
23443827 TAGGCATACGGAGTTCA-TCCCTAGTC
1 TAGGCATACAGAGTTCATTCCC-AGTC
23443853 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
23443879 TA
1 TA
23443881 AGATCGGATC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:23444192 original size:367 final size:368
Alignment explanation
Indices: 23443540--23444442 Score: 992
Period size: 367 Copynumber: 2.5 Consensus size: 368
23443530 TAGGACCAGT
* * * * * **
23443540 AGCAGAATTGGTAGCACGCAGGAGGGGATCGGGCCAATCCCCGGCTTACGCATTCTGCCTCTCCG
1 AGCAGGATCGGTAGCACGCAAG-GGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCG
* * * * *
23443605 ATCGACTGAGCGCTCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATC
65 ATCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * ** * * *
23443670 -AAGCACCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGGTAGTGGGATCGACAGCACGCAGAGG
130 TAAGCACCAGTCGGACTGAGGGTTGTGGCAGCAGGATCGACAGTGAGATCGACAGCACGAAGAAG
** * * * * * * * **
23443734 GTTACCGGGCTGATCCTCGACATGTGCCTTATGCCCCTCCGGCTGGCCTCTCCGATCGGCTGAGT
195 GAGACCGGGCTGATCCCCGACATGCGCATTATGCCCCTCCGACCGACCTCTCAGATCGGCTGAAC
* ** * * * *
23443799 GCCCGTACGCCTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAGGCATACAG
260 ACCCACACGCCTATTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAGGCATACAG
* * *
23443864 AGTTCATTCCCA-GTCTAAGATCGGA-TCGGACTGAGGGTTACGGC
325 AGTTCATT-CCATGTCTAAGATCAGACT-GGACCGAGGGTTACGAC
* * *
23443908 AGCAGGATCGGTAGCACGCATGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCTGA
1 AGCAGGATCGGTAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGA
* * *
23443973 CCGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTTGGCATAGGGAGTTCATT-CATGTCT
66 TCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * *
23444037 AAGCTCCAGTCGGACTGAGGGTTGTGGTAGCAGGATCGACAGTGAGATCGGCAGCAC-AAGGAAG
131 AAGCACCAGTCGGACTGAGGGTTGTGGCAGCAGGATCGACAGTGAGATCGACAGCACGAA-GAAG
* * *
23444101 GAGACCGGGTTGATCCCCGACATGCGCATTATGCCTCTCCGACCGACCTCTCTAG-TCGGTTGAA
195 GAGACCGGGCTGATCCCCGACATGCGCATTATGCCCCTCCGACCGACCTCTC-AGATCGGCTGAA
* * * ** *
23444165 CATCCACACG-CTCATTTCGTAGGTTGACTTAGGTATACGGAGTTCATCCCCAATCTAGGTGTAT
259 CACCCACACGCCT-ATTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAGGCATAC
23444229 AGAGTTCATTCCATGTCTAAGATCAGACTGGACCGAGGGTTACGAC
323 AGAGTTCATTCCATGTCTAAGATCAGACTGGACCGAGGGTTACGAC
** * * * * * *
23444275 AGCAGGATCGACAGTACGCAAGAGGAACCGGGCTGATCCCCGACTTGTGCATGCTGCCTCTCCGA
1 AGCAGGATCGGTAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGA
* * * * ** **
23444340 TCGGCTGAGCGCCTGCACGTCCATTTCGCAGGTTGGCTTAGGTGTAGGGAGTTCATTCCATGTCT
66 TCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* ** * *
23444405 AAGCCCCAACCGGATTGAGGGTTGTGGCAGCGGGATCG
131 AAGCACCAGTCGGACTGAGGGTTGTGGCAGCAGGATCG
23444443 GTAGCACGTA
Statistics
Matches: 443, Mismatches: 85, Indels: 14
0.82 0.16 0.03
Matches are distributed among these distances:
366 11 0.02
367 372 0.84
368 60 0.14
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (368 bp):
AGCAGGATCGGTAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGA
TCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
AAGCACCAGTCGGACTGAGGGTTGTGGCAGCAGGATCGACAGTGAGATCGACAGCACGAAGAAGG
AGACCGGGCTGATCCCCGACATGCGCATTATGCCCCTCCGACCGACCTCTCAGATCGGCTGAACA
CCCACACGCCTATTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAGGCATACAGA
GTTCATTCCATGTCTAAGATCAGACTGGACCGAGGGTTACGAC
Found at i:23444734 original size:26 final size:26
Alignment explanation
Indices: 23444698--23444750 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23444688 GTTGGCATAG
23444698 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23444724 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23444750 G
1 G
23444751 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23444942 original size:26 final size:26
Alignment explanation
Indices: 23444906--23444957 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23444896 GTTGAATTAG
23444906 GCATACAGAGTTAATCCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
* * *
23444932 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
23444958 AATCGGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTAATCCCCAGTCTAA
Found at i:23445285 original size:26 final size:26
Alignment explanation
Indices: 23445249--23445299 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
23445239 TTAGCCTAGG
*
23445249 CATACGGAGTTCATTCCATGTCTAAA
1 CATACGGAGTTCATTCCAAGTCTAAA
*
23445275 CATACGGAGTTGATTCCAAGTCTAA
1 CATACGGAGTTCATTCCAAGTCTAA
23445300 GAGTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCAAGTCTAAA
Found at i:23445401 original size:11 final size:11
Alignment explanation
Indices: 23445369--23445395 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
23445359 ACCTGGGAAC
23445369 CATCGTCGGAG
1 CATCGTCGGAG
23445380 CATCGTCGGAG
1 CATCGTCGGAG
23445391 CATCG
1 CATCG
23445396 CTGGAGAGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:23446016 original size:26 final size:26
Alignment explanation
Indices: 23445980--23446032 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23445970 GTTGACTTAG
* *
23445980 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
23446006 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
23446032 G
1 G
23446033 ATTGGACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:23446366 original size:26 final size:26
Alignment explanation
Indices: 23446336--23446387 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23446326 TTGACTTAGT
*
23446336 CATACTGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
* *
23446362 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
23446388 AGCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:23446669 original size:157 final size:158
Alignment explanation
Indices: 23446361--23446734 Score: 425
Period size: 157 Copynumber: 2.4 Consensus size: 158
23446351 CCCAGTCTAA
* * * *
23446361 GCATACGGAGTTCATTCC-TAGTCTAAGAGCAGACCGGATTGAGGGTTGCGACAGTAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGACCAGACCGGACTGAGCGTTGCGACAGTAGGATAGAC
* * * * *
23446425 AGCACGCAGGGGGGACCGGGCCGGTCCGCAGCTTGCGCATTCTACCCCTCCGGCTGGCTGAGTGC
65 AGCACGCAGGGGGGAACGGGCCGATCCCCAGCTTGAGCATTCTACCCCTCCGGCTGGCTGAGCGC
*
23446490 CCGTACGCCCATTTCGTGGGTTGGCTTAG
130 CCGCACGCCCATTTCGTGGGTTGGCTTAG
* * * *
23446519 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACTGAGCGTTGTGGCAGCTA-GATAGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCGGACTGAGCGTTGCGACAG-TAGGATAGA
* * * * *
23446582 CAGCACGCA-GGGGGAACGGGCCGATCCCCGGCTTGAGCATTCTGCCTCTTCGGTTGGCTGAGCG
64 CAGCACGCAGGGGGGAACGGGCCGATCCCCAGCTTGAGCATTCTACCCCTCCGGCTGGCTGAGCG
* * *
23446646 TCCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCCCATTTCGTGGGTTGGCTTAG
* * * * * *
23446676 GCATATGGAGTTCATTCTCA-GTCTAAGATCGGACTGGACTGAGGGTTGCGGCAGTAGGA
1 GCATACGGAGTTCATTC-CATGTCTAAGACCAGACCGGACTGAGCGTTGCGACAGTAGGA
23446735 CCAATAGCAG
Statistics
Matches: 181, Mismatches: 29, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
156 4 0.02
157 114 0.63
158 57 0.31
159 6 0.03
ACGTcount: A:0.18, C:0.26, G:0.33, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCGGACTGAGCGTTGCGACAGTAGGATAGACA
GCACGCAGGGGGGAACGGGCCGATCCCCAGCTTGAGCATTCTACCCCTCCGGCTGGCTGAGCGCC
CGCACGCCCATTTCGTGGGTTGGCTTAG
Found at i:23448011 original size:326 final size:326
Alignment explanation
Indices: 23447413--23448051 Score: 1010
Period size: 326 Copynumber: 2.0 Consensus size: 326
23447403 GTGCTGGTAA
*
23447413 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCA
1 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
23447478 TTTGAGATTTTATAGGTTTGCTACCAGTAGCCGTTAAAGTGTCTGAAATGATGACACTTTTTTCA
66 TTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCA
* *
23447543 AACGGTAACAAAAACTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTCTGCATGCCAATAAAAA
131 AACGGTAACAAAAACTTCTCCACCTCGAGTTTTTAGCTGAATTTTTTTCTGCATGCCAACAAAAA
* * * ** *
23447608 TACAAGGATCTCCTCTACCAAATTTGGGGCCAAAACTCTTTCCAAAAGAATTGTAAAAAATCCCG
196 TAAAAGGACCACCTCTACCAAATTTGGGAACAAAACTCTTTCCAAAAAAATTGTAAAAAATCCCG
* **
23447673 AACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCACTTGGCATGACA
261 AACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCACTTGGCATGACA
23447738 C
326 C
23447739 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
1 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
23447804 TTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-AGGGACACTTTTTTC
66 TTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGA-GGACACTTTTTTC
* * * * *
23447868 AAACGGTCACAAAATCTTCTCCACCTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACCAAA
130 AAACGGTAACAAAAACTTCTCCACCTCGAGTTTTTAGCTGAATTTTTTTCTGCATGCCAACAAAA
* * * *
23447933 ATAAAAGGACCACCTCTACCAAATTTGGGAATAGAACTCTTTCTAAAAAAATTTTAAAAAATCCC
195 ATAAAAGGACCACCTCTACCAAATTTGGGAACAAAACTCTTTCCAAAAAAATTGTAAAAAATCCC
* * * *
23447998 GAACCGCAAAAAGTTTCAAAAATCGTGAAAATTAGAAAACGGGTCGTCTTGCCA
260 GAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCA
23448052 GAAACTTTAC
Statistics
Matches: 284, Mismatches: 28, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
325 1 0.00
326 283 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (326 bp):
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCA
AACGGTAACAAAAACTTCTCCACCTCGAGTTTTTAGCTGAATTTTTTTCTGCATGCCAACAAAAA
TAAAAGGACCACCTCTACCAAATTTGGGAACAAAACTCTTTCCAAAAAAATTGTAAAAAATCCCG
AACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCACTTGGCATGACA
C
Found at i:23448270 original size:26 final size:26
Alignment explanation
Indices: 23448234--23448286 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23448224 GGTTGACTAG
23448234 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23448260 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23448286 G
1 G
23448287 ATCGAACCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23448564 original size:159 final size:157
Alignment explanation
Indices: 23448257--23448605 Score: 380
Period size: 159 Copynumber: 2.2 Consensus size: 157
23448247 ATCCCCAGTC
** * * * * * * *
23448257 TAAGCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCCGACCCAGGGTTAATGGTAGCAGGAT
1 TAAGCATACGGAGTTCATT-CCATGTCTAAGCCCTAGCCAGACCGAGGGTT-GTGGCAGCGGGAT
23448321 CGACAGCATGCAGGAGGGACCAGGCTGATCCCCGACTTACGCATTCTACCTCCCCGACCGGTTGA
64 CGACAGCATGCAGGAGGGACCAGGCTGATCCCCGACTTACGCATTCTACCTCCCCGACCGGTTGA
** * *
23448386 GTGCCCGTACACCCGTTTCGTGGGTTGGCT
129 GCACCCG-ACACCCATTTCGTGGGCTGGCT
* *
23448416 TAAGCATAGGGAGTTCATTTCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGCGGGATCG
1 TAAGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGCGGGATCG
* * * * * ** * *
23448481 GCAGCATGCAAAGG-GGGATCAGGTTGATTCCCGGCTTGTGCATTCTGCCTCTCCGACCGGTTGA
66 ACAGCATGC--AGGAGGGACCAGGCTGATCCCCGACTTACGCATTCTACCTCCCCGACCGGTTGA
23448545 GCACCC-ACACGCTCATTTCGTGGGCTGGCT
129 GCACCCGACAC-C-CATTTCGTGGGCTGGCT
* *
23448575 TAGGCGTACGGAGTTCATTCCATGTCTAAGC
1 TAAGCATACGGAGTTCATTCCATGTCTAAGC
23448606 ATACGGAGTT
Statistics
Matches: 157, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
157 4 0.03
158 23 0.15
159 127 0.81
160 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
TAAGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGCGGGATCG
ACAGCATGCAGGAGGGACCAGGCTGATCCCCGACTTACGCATTCTACCTCCCCGACCGGTTGAGC
ACCCGACACCCATTTCGTGGGCTGGCT
Found at i:23448617 original size:26 final size:26
Alignment explanation
Indices: 23448581--23448630 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
23448571 GGCTTAGGCG
23448581 TACGGAGTTCATT-CCATGTCTAAGCA
1 TACGGAGTTCATTCCCA-GTCTAAGCA
23448607 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
23448631 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:23449344 original size:26 final size:26
Alignment explanation
Indices: 23449307--23449356 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
23449297 GATGACTTAG
*
23449307 GCATACGGAGTTCATCCCCAGTCTCA
1 GCATACGAAGTTCATCCCCAGTCTCA
*
23449333 GCATACGAAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATCCCCAGTCT
23449357 AAGATCAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTCA
Found at i:23449812 original size:158 final size:155
Alignment explanation
Indices: 23449333--23449833 Score: 501
Period size: 158 Copynumber: 3.2 Consensus size: 155
23449323 CCCAGTCTCA
*
23449333 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACC-GAATCGAGGGTTGCGGCAGCAGGATCGAT
1 GCATACGAAGTTCATTCCCAGTCTAAGATCA-ACCAG-ACCGAGGGTTGCGGCAGCAGGATCGAT
* * * * *
23449397 AGCACGCAGGGCGGATTGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGCGGCTGAGCGCC
64 AGCACACAGGG-GGATCGGGCCAATCCCCAGCTTGCACATTCTGCCTCTTCGGCGGCTAAGCGCC
*
23449462 CGCACGCCCGTTTCGTGGGTTGGCTTAG
128 CGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * * * * *
23449490 GCATA-GAGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGTAGCGGGACCGA
1 GCATACGA-AGTTCATTCCCA-GTCTAAG-ATCAACCAGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * *
23449553 CAGCACACAGAGGGGGATCGGGCCAATCCCCAGCTTGCACATTATGCCTCTTCGATCGGCTTAGT
63 TAGCACAC--AGGGGGATCGGGCCAATCCCCAGCTTGCACATTCTGCCTCTTCG-GCGGCTAAGC
* * * *
23449618 GCCCGCATGCTTGTTTCATGGGTTGACTTAG
125 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
23449649 GCATAC-AGAGTTCATTCCCAGTCTATGATCGAACCAGACCGAGGGTTGCGGCAGTAGGATCGAT
1 GCATACGA-AGTTCATTCCCAGTCTAAGATC-AACCAGACCGAGGGTTGCGGCAGCAGGATCGAT
* * * ** * * * * *
23449713 AGCACATAGGAGGGACCGGGTCGGTCCTC-GACTTACACATTCTACCTCTTCGGCCGACTAAGCA
64 AGCACACAGG-GGGATCGGGCCAATCCCCAG-CTTGCACATTCTGCCTCTTCGG-CGGCTAAGCG
23449777 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
126 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
23449807 GCATACGAAGTTCATT-CCATGTCTAAG
1 GCATACGAAGTTCATTCCCA-GTCTAAG
23449834 CATACGGAGT
Statistics
Matches: 276, Mismatches: 53, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
156 5 0.02
157 55 0.20
158 123 0.45
159 90 0.33
160 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (155 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAACCAGACCGAGGGTTGCGGCAGCAGGATCGATAG
CACACAGGGGGATCGGGCCAATCCCCAGCTTGCACATTCTGCCTCTTCGGCGGCTAAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:23449844 original size:26 final size:26
Alignment explanation
Indices: 23449807--23449859 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23449797 GTTGGCTTAG
23449807 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
23449833 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
23449859 G
1 G
23449860 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:23450702 original size:26 final size:26
Alignment explanation
Indices: 23450650--23450702 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23450640 GATGGTTTAG
*
23450650 GCATACAGAGTTCATTCCATGTGTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
23450676 GCATACGGAGTTCATTCC-TAGTCTAA
1 GCATACAGAGTTCATTCCAT-GTCTAA
23450702 G
1 G
23450703 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:23451454 original size:856 final size:837
Alignment explanation
Indices: 23449256--23451659 Score: 2538
Period size: 843 Copynumber: 2.8 Consensus size: 837
23449246 TGCACATCCT
** *
23449256 GCCTCTCTGGTCGGCTGAGCATCCGCACGCTCGTTTCGTGGGATGACTTAGGCATACGGAGTTCA
1 GCCTCTC-GGTCGGCTGAGCGCCCGCACGCTCGTTTCG-GGGTTGACTTAGGCATACGGAGTTCA
* * * *
23449321 TCCCCAGTCTCAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGCA
64 TCCCCAGTCTAAGCATACG-AGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGC-G-A
* **
23449386 GCAGGATCGATAGCACGCAGGGCGGATTGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGG-
126 -CA-G--C---AG---GCAGGGAGGA-CAGG-C-ATCCCCAGCTTG-GCATTCTGCCTCTCCGGC
* *
23449450 CGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTA
177 CGGCTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * * *
23449515 AGCCCCAGCC-AGACTGAGGGTTGTGGTAGCGGGACCGACAGCACACAGAGGGGGATCGGGCCAA
242 AGCCCCAGCCGA-ACCGAGGGTTGTGGCAGCGGGACCGGCAGCACACAGAGGGGGATCGGGCCGA
* * * * * *
23449579 TCCCCAGCTTGCACATTATGCCTCTTCGATC-GGCTTAGTGCCCGCATGCTTGTTTCATGGGTTG
306 TCCCCAGCTTGTACATTATGCCTCTCCGATCAGGCTCAGTGCCCGAATGCTCGTTTCGTGGGTTG
* **
23449643 ACTTAGGCATACAGAGTTCATTCCCAGTCTATGATCGAACC-AGACCGAGGGTTGCGGCAGTAGG
371 ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCG-ACCGA-AATGAGGGTTGCGGCAGTAGG
* * * * * *
23449707 ATCGATAGCACATAGGAGGGACCGGG-TCGGTCCTCGACTTACACATTCTACCTCTTCGGCCGAC
434 ATCGATAGCACACAGGGGGGACCGGGCT-GGTCC-CGACTTGCGCATTCTGCCTC-TCCGCCGAC
* *
23449771 TAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
496 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG-AGTTCATTCCATGTCTAAGCA
** * * *
23449836 TACGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCGAGGGTTGCGGTAGCAGGACCAGCATCA
560 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGACCAGCAGCA
* * * * * *
23449901 GGATCGAAAGCATGTAGGGGTGGACCGGGTCGATCCCTGGCTTGAGCATTCTGCCTCTCCCGGCC
625 GGATCGAAAGCACGCAGGGG-GGACCGGCT-GATCCCCGGCTTGCGCATTCTGCCTCT-CCGACC
* * *
23449966 GGACTGAGCACCCGCATGCTTGTTTCATATGGTTGGCTTAGTCAAACTAACAGTTCAATTCCATG
687 GGACTAAGCACCCGCACGCTTGTTTCATATGGTTGGCTTAGGCAAAC-AACAGTTCAATTCCATG
* * * *
23450031 TCTAAGCCCCCCACCGAATCAAGGGTTGGTGGTAGTAGGAACGGCAGCACGTAGAGCGGGAACCG
751 TCTAAG-CCACCACCGAACCAAGGGTTGGTGGAAGTAGGAACGGCAGCACGTAGAGCGGGAACAG
** *
23450096 GACTGATCCTCGACTTATTATAT
815 GACTGATCCTCGACTTAGCATAA
* * * * *
23450119 GCCTCTCCGGCCAGCTGAGCGCCCACACACGCTCGTTTCGTGGTTGACTTAGGCATACAGAGTTC
1 GCCTCT-CGGTCGGCTGAGCG-CC-CGCACGCTCGTTTCGGGGTTGACTTAGGCATACGGAGTTC
* * * * * *
23450184 ATCCCCAATCTAAGTACACGGAGTTCATTCCAAGTCAAATGATCA-TCCAGACCGAGGGTTGCGA
63 ATCCCCAGTCTAAGCATAC-GAGTTCATTCCAAGTCTAA-GATCAGACCGGACCGAGGGTTGCGA
* * **
23450248 CA--A--TA-GGACGACA-GCA-----AGC--GGCATTC-GCCTCTCCGCGACTAGCTGAGTGCC
126 CAGCAGGCAGGGAGGACAGGCATCCCCAGCTTGGCATTCTGCCTCTCCG-G-CCGGCTGAGTG-C
*
23450299 CCGCACGCCCGTTTCGTGGCTTGGCTTAGGCAATAAGGGGAGTTCCATGTCCATGTCTAAGCCCC
188 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGC-AT-A-GGGAGTT-CAT-TCCATGTCTAAGCCCC
* *
23450364 AGCCGAACCGAGAGTTGTGGCAGCGGGACCGGCAGCACACA-ATGGGGGATCGGGCCGATCCCCG
248 AGCCGAACCGAGGGTTGTGGCAGCGGGACCGGCAGCACACAGA-GGGGGATCGGGCCGATCCCCA
* *
23450428 GCTTGTACATTATGCCTCTCCGATCA-GCTCAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
312 GCTTGTACATTATGCCTCTCCGATCAGGCTCAGTGCCCGAATGCTCGTTTCGTGGGTTGACTTAG
* * * *
23450492 GCATACAGAGTTCATTCCCAGTCTAAGATTGGATCG-GATCGAGGGTTGCTGCAGTAGGATCGAT
377 GCATACAGAGTTCATTCCCAGTCTAAGA-TCGACCGAAAT-GAGGGTTGCGGCAGTAGGATCGAT
** * * *
23450556 AGCATGCAGAGGGTGACCGGAC-GGTCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGTGCG
440 AGCACACAG-GGGGGACCGGGCTGGT-CCCGACTTGCGCATTCTGCCTCTCCG-CCGACTGAGCG
* * * *
23450620 CCCGCACGCTCGTTTCATGGGATGGTTTAGGCATACAGAGTTCATTCCATGTGTAAGCATACGGA
502 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGCATACGGA
* * *
23450685 GTTCATTCCTAGTCTAAGATCGGACTAGACCGAGGGTTGCGGTAACAGGACCAGCAGCAGGATCG
566 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCG
* *
23450750 ATAGCACGCAGGGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGG-CTAAG
631 AAAGCACGCAGGGGGGACCG-GCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGACTAAG
* * **
23450814 CGCCCGCACGCTTGTTTCAT-TGGTTGGCTTAGGCATAC-GGAGTTC-ATTCCATGTCTAAG-CA
695 CACCCGCACGCTTGTTTCATATGGTTGGCTTAGGCAAACAACAGTTCAATTCCATGTCTAAGCCA
* * * *
23450875 CCAGTCGAACCGAA-GGTT-GTGGCAACAAGATTGGCAGCGGGATCGATAGCACGTAGAG-GGGG
760 CCA-CCGAACC-AAGGGTTGGTGG----AAG-TAGG-AAC-GG--C---AGCACGTAGAGCGGGA
** *
23450937 ACAGGGTTTATCCTCGACTTACGCATTAA
811 ACAGGACTGATCCTCGACTTA-GCA-TAA
* * *
23450966 GCCTCTACGGTCGGCTGAGTGCCCGCATGCTCATTTCAGGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCT-CGGTCGGCTGAGCGCCCGCACGCTCGTTTC-GGGGTTGACTTAGGCATACGGAGTTCA
* * *
23451031 TCCCCAGTCTAAGCATACAGTGTTCACTCTAAGTCTAAGATCAGACCGGACCGAGGGTTGCGACA
64 TCCCCAGTCTAAGCATAC-GAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGACA
* * * *
23451096 GCAGGCAGGGGGGACCAGGCTGATCCCCGGCTTGTGCATTCTGCTTCTCTGGCCGGCTGAGTGCC
128 GCAGGCAGGGAGGA-CAGGC--ATCCCCAGCTTG-GCATTCTGCCTCTCCGGCCGGCTGAGTGCC
* *
23451161 CGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGA
189 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGA
* * * * *
23451226 ACCGAGGGTTGTGGCAACGGGACCGGCAGCACGCAGAGCGGGA-CTGGGCTGATCCACAGCTTGT
254 ACCGAGGGTTGTGGCAGCGGGACCGGCAGCACACAGAGGGGGATC-GGGCCGATCCCCAGCTTGT
* * ** *
23451290 GCATTATGCCTCTCCG-GCAGGCTCAGCACCCGAATGCTCATTTCGTGGGTTGACTTAGGCATAC
318 ACATTATGCCTCTCCGATCAGGCTCAGTGCCCGAATGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
23451354 GGAGTTCATTCCCAGTCTAAGATCAGACCGAAATGAGGGTTGCGGCAGCAGGATCGACAGCACAC
383 AGAGTTCATTCCCAGTCTAAGATC-GACCGAAATGAGGGTTGCGGCAGTAGGATCGATAGCACAC
** * * * * *
23451419 AGGGGGGAATGGGCTGGTCTCCGGCTTGTGCATTCTGCCTCTCCTGCAGGCTGAGCGCCTGCACG
447 AGGGGGGACCGGGCTGGTC-CCGACTTGCGCATTCTGCCTCTCC-GCCGACTGAGCGCCCGCACG
*
23451484 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG-CTAAGCATACAGAGTTCATTC
510 CTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
**
23451548 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCGGCAGCACG
574 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCGAAAGCACG
* ** **
23451613 CAGGGGGGGATCGGGCCAATCCCCAACTTGCGCATTCTGCCTCTCCG
639 CA-GGGGGGA-CCGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCG
23451660 GTCGGCCCCT
Statistics
Matches: 1287, Mismatches: 182, Indels: 151
0.79 0.11 0.09
Matches are distributed among these distances:
834 17 0.01
835 16 0.01
836 17 0.01
837 12 0.01
838 36 0.03
839 21 0.02
840 25 0.02
841 15 0.01
842 37 0.03
843 343 0.27
844 15 0.01
845 37 0.03
846 88 0.07
847 23 0.02
848 2 0.00
850 1 0.00
851 4 0.00
852 2 0.00
853 3 0.00
855 95 0.07
856 296 0.23
857 9 0.01
858 7 0.01
859 1 0.00
860 4 0.00
861 31 0.02
862 11 0.01
863 24 0.02
864 75 0.06
865 20 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (837 bp):
GCCTCTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGGGGTTGACTTAGGCATACGGAGTTCATC
CCCAGTCTAAGCATACGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCA
GGCAGGGAGGACAGGCATCCCCAGCTTGGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGC
CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGG
GTTGTGGCAGCGGGACCGGCAGCACACAGAGGGGGATCGGGCCGATCCCCAGCTTGTACATTATG
CCTCTCCGATCAGGCTCAGTGCCCGAATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
TTCCCAGTCTAAGATCGACCGAAATGAGGGTTGCGGCAGTAGGATCGATAGCACACAGGGGGGAC
CGGGCTGGTCCCGACTTGCGCATTCTGCCTCTCCGCCGACTGAGCGCCCGCACGCTCGTTTCGTG
GGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
CGGACCAGACCGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCGAAAGCACGCAGGGGGGACCG
GCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGACTAAGCACCCGCACGCTTGTTTCATA
TGGTTGGCTTAGGCAAACAACAGTTCAATTCCATGTCTAAGCCACCACCGAACCAAGGGTTGGTG
GAAGTAGGAACGGCAGCACGTAGAGCGGGAACAGGACTGATCCTCGACTTAGCATAA
Found at i:23451505 original size:158 final size:159
Alignment explanation
Indices: 23451113--23451533 Score: 478
Period size: 159 Copynumber: 2.7 Consensus size: 159
23451103 GGGGGGACCA
* * * * * *
23451113 GGCTGATCCCCGGCTTGTGCATTCTGCTTCT-CTGGCCGGCTGAGTGCCCGTACGCCCGTTTCAT
1 GGCTGAT-CCCGGCTTGTGCATTCTGCCTCTCCT-GCAGGCTGAGCGCCCGAACGCTCGTTTCGT
* * * *
23451177 GGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGC
64 GGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCACCAGCCGAAACGAGGGTTGCGGC
* * * *
23451241 AACGGGACCGGCAGCACGCAGAGCGGGACTG
129 AACAGGACCGACAGCACACAGAGCGGGAATG
* * * * * * *
23451272 GGCTGATCCACAGCTTGTGCATTATGCCTCTCCGGCAGGCTCAGCACCCGAATGCTCATTTCGTG
1 GGCTGATCC-CGGCTTGTGCATTCTGCCTCTCCTGCAGGCTGAGCGCCCGAACGCTCGTTTCGTG
* * *
23451337 GGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAAATGAGGGTTGCGGC
65 GGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCACCAG-CCGAAACGAGGGTTGCGGC
* * *
23451400 AGCAGGATCGACAGCACACAG-GGGGGAATG
129 AACAGGACCGACAGCACACAGAGCGGGAATG
* * *
23451430 GGCTGGTCTCCGGCTTGTGCATTCTGCCTCTCCTGCAGGCTGAGCGCCTGCACGCTCGTTTCGTG
1 GGCTGATC-CCGGCTTGTGCATTCTGCCTCTCCTGCAGGCTGAGCGCCCGAACGCTCGTTTCGTG
23451495 GGTTGGCTTAGGCATACGGAGTTCATT-CCATG-CTAAGCA
65 GGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCA
23451534 TACAGAGTTC
Statistics
Matches: 217, Mismatches: 38, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
157 8 0.04
158 93 0.43
159 112 0.52
160 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.24
Consensus pattern (159 bp):
GGCTGATCCCGGCTTGTGCATTCTGCCTCTCCTGCAGGCTGAGCGCCCGAACGCTCGTTTCGTGG
GTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCACCAGCCGAAACGAGGGTTGCGGCAA
CAGGACCGACAGCACACAGAGCGGGAATG
Found at i:23451751 original size:26 final size:26
Alignment explanation
Indices: 23451715--23451767 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23451705 GTTGACTTAG
*
23451715 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23451741 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23451767 G
1 G
23451768 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23451949 original size:26 final size:26
Alignment explanation
Indices: 23451900--23451951 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23451890 TTGGCTTAGC
*
23451900 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATATCTAAG
23451926 CATACGGAGTTCATTCCCA-ATCTAAG
1 CATACGGAGTTCATT-CCATATCTAAG
23451952 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATATCTAAG
Found at i:23452300 original size:26 final size:26
Alignment explanation
Indices: 23452250--23452302 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23452240 GGGTTATTAG
*
23452250 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
23452276 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
23452302 G
1 G
23452303 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:23453404 original size:158 final size:157
Alignment explanation
Indices: 23452967--23453466 Score: 524
Period size: 158 Copynumber: 3.2 Consensus size: 157
23452957 CCTAGTCTAA
* * * * ** *
23452967 GCATATGCAGTTCATTCTCA-GTCTAAGATCGGATCAGACCGAGGGTTACGACAGCAGGATCGAT
1 GCATATGGAGTTCATTC-CATGTCTAAGATCGAACCAGATCGAGGGTTACGGTAGCAGGATCGAC
** * * *
23453031 AGCATGCAGGGGGGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGC
65 AGCACACAGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
*
23453096 CCGCACGCCCATTTCGTGGGTCGGCTTAG
130 CCGCACGCTCATTTCGTGGGT-GGCTTAG
* * * * * ** * *
23453125 GCATAGGGAGTTCATTGCATGTCTAAG-CCCAACCGGATCGA-GGTTGTGGTAGCGGGACCGACA
1 GCATATGGAGTTCATTCCATGTCTAAGATCGAACCAGATCGAGGGTTACGGTAGCAGGATCGACA
* * * * *
23453188 GCATGA-AGAGGGGGATCAGGTCGATCCTCGACTTGTGCATTATGCCTCTCCGACCGGCTCAGCG
66 GCA-CACAG-GGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * * *
23453252 CCTGTACGCTCGTTTTGTGGGTGGACTTAG
129 CCCGCACGCTCATTTCGTGGGTGG-CTTAG
* * *
23453282 GCATATGGAGTTCATTCCCA-GTCTAAGATTGAACCAGATCGAGGGTTACGGTAGCAAGATTGAC
1 GCATATGGAGTTCATT-CCATGTCTAAGATCGAACCAGATCGAGGGTTACGGTAGCAGGATCGAC
* ** * * *
23453346 GGCACACAGGGGGGATTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCTATCGGCTGAGCGC
65 AGCACACAGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
*
23453411 CCGCACGCTCATTTCGTGGGTTGGCTCAG
130 CCGCACGCTCATTTCGTGGG-TGGCTTAG
*
23453440 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
23453467 CATACGAAGT
Statistics
Matches: 273, Mismatches: 59, Indels: 20
0.78 0.17 0.06
Matches are distributed among these distances:
156 22 0.08
157 105 0.38
158 123 0.45
159 23 0.08
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCGAACCAGATCGAGGGTTACGGTAGCAGGATCGACA
GCACACAGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTGGCTTAG
Found at i:23453477 original size:26 final size:26
Alignment explanation
Indices: 23453440--23453492 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23453430 GTTGGCTCAG
*
23453440 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
23453466 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
23453492 G
1 G
23453493 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:23453913 original size:164 final size:166
Alignment explanation
Indices: 23453675--23453978 Score: 391
Period size: 164 Copynumber: 1.8 Consensus size: 166
23453665 CTAGCCGGAT
* * * * * *
23453675 CGAGGGTTGTGGTAGTAGGACCGACAGCACGCAGAGGGGGACTGGGTCGATCCTCGGCTTGTGCA
1 CGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTATGCA
*
23453740 TTATGCCTC-TC-ATGCCGGCTCAGCACCCG-T-ACGCTCGTTTCGTGGGTTGACTTAGGCATAC
66 TTATGCCTCTTCGA--CCGGCTCAGCACCCGATCACGCTCGTTTCATGGGTTGACTTAGGCATAC
*
23453801 GGAGTTCATTTCCAGTCTAAGATCAGACCGGACCGAAC
129 AGAGTTCATTTCCAGTCTAAGATCAGACCGGACCGAAC
* * * *
23453839 CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGTGGGGGACCGGGCCGATCCTTGGCTTATGCG
1 CGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTATGCA
* * * * *
23453904 TTCTGCCTCTTCGACCGGTTGAGCACCCGCATGCATGCTCGTTTCATGGGTTGGCTTAGGCATAC
66 TTATGCCTCTTCGACCGGCTCAGCACCCG-AT-CACGCTCGTTTCATGGGTTGACTTAGGCATAC
23453969 AGAGTTCATT
129 AGAGTTCATT
23453979 CCATGTCCAA
Statistics
Matches: 117, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
164 76 0.65
165 2 0.02
166 2 0.02
168 37 0.32
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (166 bp):
CGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTATGCA
TTATGCCTCTTCGACCGGCTCAGCACCCGATCACGCTCGTTTCATGGGTTGACTTAGGCATACAG
AGTTCATTTCCAGTCTAAGATCAGACCGGACCGAAC
Found at i:23454113 original size:523 final size:511
Alignment explanation
Indices: 23452913--23454220 Score: 1495
Period size: 523 Copynumber: 2.5 Consensus size: 511
23452903 GCTGAGCTTC
* * * *
23452913 TGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCTAGTCTAAGCATATGCAG
1 TGCA-GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATACGAAG
*
23452977 TTCATTCTCAGTCTAAGATCGGATCAGACCGAGGG-T-TA-C--GA-CAG--CAGGATCGATAGC
64 TTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTAGCAGGACCAGCACAGGATCGATAGC
* * * * * *
23453034 ATGCAGGGGGGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCG
129 ACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGATTGAGCGCCCG
** * *
23453099 CACGCCCATTTCGTGGGTCGGCTTAGGCATAGGGAGTTCATTGCATGTCTAAGCCCAACCGGATC
194 CACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAACCGGATC
** *
23453164 GA-GGTTGTGGTAGCGGGACCGACAGCATGAAGAGGGGGATCAGGTCGATCCTCGACTTGTGCAT
259 GAGGGTTGTGGTAGTAGGACCGACAGCACGAAGAGGGGGATCAGGTCGATCCTCGACTTGTGCAT
* * * *
23453228 TATGCCTCTCCGACCGGCTCAGCGCCTGTACGCTCGTTTTGTGGGTGGACTTAGGCATATGGAGT
324 TATGCCTCTCCGACCGGCTCAGCACCCGTACGCTCGTTTCGTGGGTGGACTTAGGCATACGGAGT
* * * * *
23453293 TCATTCCCAGTCTAAGATTGAACCAGATCGAGGGTTACGGTAGCAAGATTGACGGCACACAGGGG
389 TCATTCCCAGTCTAAGATAGAACCAGACCGAGGGTTACGGCAGCAAGATCGACAGCACACAGGGG
** * * * *
23453358 GGATTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCTATCGGCTGAGCGCCCGCA
454 GGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCA
* *
23453416 --C-GCTCATTTCGTGGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTT
1 TGCAGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTT
* * * **
23453478 CATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTGTGGCAGTAGGACCAGCAGTAGGATCGGC
66 CATTCCCAGTCTAAGATCGGATC-AGACCGAGGGTTGT---AGCAGGACCAGCA-CAGGATCGAT
* * * * * *
23453542 AGCACACAAGGGGGACTGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGTTTGAGCGC
126 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGATTGAGCGC
** * * *
23453607 TTGCACGCCTGTTTCGTGGGTTGTCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCG
191 CCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC-AACCG
* * *
23453672 GATCGAGGGTTGTGGTAGTAGGACCGACAGCACGCAGAGGGGGA-CTGGGTCGATCCTCGGCTTG
255 GATCGAGGGTTGTGGTAGTAGGACCGACAGCACGAAGAGGGGGATC-AGGTCGATCCTCGACTTG
* *
23453736 TGCATTATGCCTCTCATG-CCGGCTCAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATA
319 TGCATTATGCCTCTC-CGACCGGCTCAGCACCCGTACGCTCGTTTCGTGGGTGGACTTAGGCATA
* * *
23453800 CGGAGTTCATTTCCAGTCTAAGATCAG-ACCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGAC
383 CGGAGTTCATTCCCAGTCTAAGAT-AGAACC--A--G-ACCGAGGGTTACGGCAGCAAGATCGAC
* ** * * * * *
23453864 AGCACGCAGTGGGGGACCGGGCCGATCCTTGGCTTATGCGTTCTGCCTCTTCGACCGGTTGAGCA
442 AGCACACAG-GGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCA
23453929 CCCGCA
506 CCCGCA
* * *
23453935 TGCATGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCCAAGCATAC-AGAG
1 TGCA-GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGA-AG
* *
23453999 TTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTACAGTAGCAGGACCAGCAACAGGATCGA
64 TTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTT---GTAGCAGGACCAGC-ACAGGATCGA
* * *
23454064 TAACGCGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTC-TCTGGCCGATTGAGC
125 TAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTC-GGCCGATTGAGC
* * * * *
23454128 ACCCACACG-CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCGATGTCTAAGCCCCAA
189 GCCCGCACGCCT-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCAA
* * *
23454192 TCGGATCGAGGGTTGTGGCAATAGGACCG
252 CCGGATCGAGGGTTGTGGTAGTAGGACCG
23454221 GAAGTGGGAT
Statistics
Matches: 667, Mismatches: 100, Indels: 56
0.81 0.12 0.07
Matches are distributed among these distances:
498 1 0.00
499 79 0.12
500 5 0.01
501 2 0.00
504 1 0.00
507 2 0.00
508 3 0.00
511 112 0.17
512 11 0.02
513 131 0.20
514 2 0.00
515 1 0.00
517 1 0.00
518 29 0.04
519 48 0.07
521 1 0.00
522 5 0.01
523 226 0.34
524 5 0.01
526 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (511 bp):
TGCAGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTT
CATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTAGCAGGACCAGCACAGGATCGATAGCAC
GCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGATTGAGCGCCCGCA
CGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAACCGGATCGA
GGGTTGTGGTAGTAGGACCGACAGCACGAAGAGGGGGATCAGGTCGATCCTCGACTTGTGCATTA
TGCCTCTCCGACCGGCTCAGCACCCGTACGCTCGTTTCGTGGGTGGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATAGAACCAGACCGAGGGTTACGGCAGCAAGATCGACAGCACACAGGGGGG
ACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCA
Found at i:23454371 original size:26 final size:26
Alignment explanation
Indices: 23454342--23454394 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23454332 GTTGACTTAG
*
23454342 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23454368 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23454394 G
1 G
23454395 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23454699 original size:159 final size:159
Alignment explanation
Indices: 23454507--23454871 Score: 414
Period size: 159 Copynumber: 2.3 Consensus size: 159
23454497 CGTACTCCCG
* * * *
23454507 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCACCAGACCGGACCGAGGGT
* * * * *
23454571 TGTGACAGCGGGA-CTGGCAGCACGTA-GAGGGGGACCGAGCCGTTCCTCGGCTTCCACATTATG
65 TGTGACAGCAGGATC-GACAGCACGCATG-GAGGGACCGAGCCGGTCCTCGGCTTCCACATTATG
* * *
23454634 CCTCTCCGGCTGGCTCAGCGCCTGAACGCTCG
128 CCTCTCCGGCCGGCTCAGCACCTGAACGCTCA
* * * *
23454666 TTTTGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCGGACCGAGGGT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCACCAGACCGGACCGAGGGT
* * * * * * * *
23454730 TGTGGCAGCAGGATCGATAGCACGCATGGAGGGATCGGGTCGGTCCTCGGCTTGCGCATTCTGCC
65 TGTGACAGCAGGATCGACAGCACGCATGGAGGGACCGAGCCGGTCCTCGGCTTCCACATTATGCC
* *
23454795 TCTCCGGCCGGCTGAGCACCTGCACGCTCA
130 TCTCCGGCCGGCTCAGCACCTGAACGCTCA
*
23454825 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTAAGCA
23454872 TAAGGAGTTC
Statistics
Matches: 171, Mismatches: 29, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
158 2 0.01
159 163 0.95
160 6 0.04
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.24
Consensus pattern (159 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCACCAGACCGGACCGAGGGTT
GTGACAGCAGGATCGACAGCACGCATGGAGGGACCGAGCCGGTCCTCGGCTTCCACATTATGCCT
CTCCGGCCGGCTCAGCACCTGAACGCTCA
Found at i:23454879 original size:26 final size:26
Alignment explanation
Indices: 23454843--23454895 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23454833 GTTGACTTAG
*
23454843 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
* *
23454869 GCATAAGGAGTTCTTTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
23454895 G
1 G
23454896 ATCAAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:23455028 original size:184 final size:185
Alignment explanation
Indices: 23454690--23455041 Score: 494
Period size: 184 Copynumber: 1.9 Consensus size: 185
23454680 TTAGGTATAC
** * *
23454690 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGC
1 GGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGC
* * * *
23454755 ATGGAGGGATCGGGTCGGTCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCTGCAC
66 ATGGAGGGATCGGGCCGGTCCTCGACTTGCGCATTCTGCCCCTCCGGCCGGCTGAGCACCCGCAC
*
23454820 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAA
131 GCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAA
* * * * *
23454875 GGAGTTCTTTCCCAGTCTAAGATCAAACTAGATCGAGGGTTGCGGCAGCAGTATCGATAGCACGT
1 GGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGC
* * *
23454940 A-GGGGGGATCGGGCCGATTCC-CGACTTGCGCATTCTGCCCCTCTGGCCGGCTGAGCACCCGCA
66 ATGGAGGGATCGGGCCG-GTCCTCGACTTGCGCATTCTGCCCCTCCGGCCGGCTGAGCACCCGCA
* *
23455003 CGCCCGTTTCGTGGGTTTG-CTTAGGCATAGGGAGTTCAT
130 CGCCCATTTCGTGGG-TTGACTTAGGCATACGGAGTTCAT
23455042 TCCATGAATA
Statistics
Matches: 146, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
184 83 0.57
185 63 0.43
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (185 bp):
GGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGC
ATGGAGGGATCGGGCCGGTCCTCGACTTGCGCATTCTGCCCCTCCGGCCGGCTGAGCACCCGCAC
GCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAA
Found at i:23455222 original size:26 final size:26
Alignment explanation
Indices: 23455186--23455238 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23455176 GTTGGCTTAG
23455186 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
23455212 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
23455238 G
1 G
23455239 AGTGTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:23456414 original size:27 final size:26
Alignment explanation
Indices: 23456384--23456441 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
23456374 GCACACTCGT
* *
23456384 TTCATGGGTTGGCTTAAGCATACGAAG
1 TTCATGGGAT-GCCTAAGCATACGAAG
**
23456411 TTCATTTGATGCCTAAGCATACGAAG
1 TTCATGGGATGCCTAAGCATACGAAG
23456437 TTCAT
1 TTCAT
23456442 TCCCAGTCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 20 0.74
27 7 0.26
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (26 bp):
TTCATGGGATGCCTAAGCATACGAAG
Found at i:23456633 original size:26 final size:26
Alignment explanation
Indices: 23456597--23456649 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23456587 GTTGACTTAG
23456597 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23456623 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23456649 G
1 G
23456650 ATCTAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23457872 original size:21 final size:21
Alignment explanation
Indices: 23457839--23457880 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
23457829 GTCTAAGCCC
23457839 CAGCCCGACCGAGGGTTGTGG
1 CAGCCCGACCGAGGGTTGTGG
* *
23457860 CAGCCGGATCGAGGGTTGTGG
1 CAGCCCGACCGAGGGTTGTGG
23457881 TAGCAGGACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.14, C:0.24, G:0.45, T:0.17
Consensus pattern (21 bp):
CAGCCCGACCGAGGGTTGTGG
Found at i:23458212 original size:158 final size:158
Alignment explanation
Indices: 23457899--23458980 Score: 628
Period size: 159 Copynumber: 6.8 Consensus size: 158
23457889 CCGACAGCGA
* * * * *
23457899 GATCGACAGCACGCAGAGGGCGACCGAGCTGATCCTCAGCTTGCGCATTATGCCTTTTCGGCCGG
1 GATCGACAGCACGCAGAGGGGGACCGAGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGGCCGG
** ** * *
23457964 CTGAGCGCCCGTACGCTTGTTTCGTGGGTTGGCTTAGGCACACGGAGTTCACTCCCAGTCTAAGA
66 CTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA-TTCCAGTCTAAGA
*** * * *
23458029 TTGGACCAGATCGAGGGTTACGGCAGTAG
130 CCAGATCAGACCGAGGGTTGCGGCAGTAG
* * * * * *
23458058 GATCGGCAGCACGTAG-GGGGGACCGAGCCGATCCTCGGCTTGCACATTCTACCTCTCCAGCCGG
1 GATCGACAGCACGCAGAGGGGGACCGAGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGGCCGG
* ** * * *
23458122 CTGAGCGCTCGTATGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
66 CTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAG-
* * * *
23458187 CCCAG-TCGGACCGAGGGTTGTGGCAG-CG
129 ACCAGATCAGACCGAGGGTTGCGGCAGTAG
* * * * * * * * *
23458215 AGACCGACAGCATGCAGAGGGGGACCGGGTCGATCCCCAGCTTGCTCATTTTGCCTCTCTGGTCG
1 -GATCGACAGCACGCAGAGGGGGACCGAGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGGCCG
* * * * * *
23458280 GCTCAGCGCCCACACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTCCATTCCCAGTCTAAG
65 GCTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAG
* * * * * *
23458345 ATCTGATCGGACTGAGGGTTGCAGCAGCAG
129 ACCAGATCAGACCGAGGGTTGCGGCAGTAG
* * * * * * *
23458375 GATCGACAGCACGTA-A-GGGGACCGGGTCGAT-CTCCGACTTACGCATTCTGCCTCTTCGGCTG
1 GATCGACAGCACGCAGAGGGGGACCGAGCCGATCCTCAG-CTTGCGCATTCTGCCTCTCCGGCCG
* ** * * * *
23458437 ACTGAGTACCCACACGTCTGTTTCGTGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAG
65 GCTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAG
* *
23458502 CCCCAG-TCAGACTGAGGGTT-CTGGCAGT-G
129 -ACCAGATCAGACCGAGGGTTGC-GGCAGTAG
* * * * * * * * *
23458531 AGACCAACAGCACACAGAGGGGGACTTG-GTCGATCC-CTGACTTACGCATTATGCCTCTCTGGC
1 -GATCGACAGCACGCAGAGGGGGAC-CGAGCCGATCCTCAG-CTTGCGCATTCTGCCTCTCCGGC
* * * * * * * *
23458594 TGGCTCAGCACCCACACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
63 CGGCTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTA
* * * * * * *
23458659 AGATCTGACCCGATCGAGGGTTGCGACAGCAG
127 AGACCAGATCAGACCGAGGGTTGCGGCAGTAG
* * ** * ** * *
23458691 GATCGATAGCACGCAG-GGGGGACCGGGTTGATCC-CCGACTTATGTATTCTGCCTCTCCGGCCA
1 GATCGACAGCACGCAGAGGGGGACCGAGCCGATCCTCAG-CTTGCGCATTCTGCCTCTCCGGCCG
* * * ** * *
23458754 GCTGAGTGCCCGCATGTTCATTTCGTGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 GCTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAG
* * * * *
23458819 CCCTAG-CCGGACTGAGGGTTGTGGCAGCTGGACTGATAGCGG
129 ACC-AGATCAGACCGAGGG-T-T----GC-GG-CAG-TA---G
* * * * ** * * * *
23458861 GATCGGCAGCACACAGAGGGGGACCGGGCTGATCCTTGGCTTGCGCATTATGCCTTTCTGGCCGA
1 GATCGACAGCACGCAGAGGGGGACCGAGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGGCCGG
* * * * * *
23458926 TTGAGCACCCACACGCTCATTTCGTGGGTTGG-TTAGGCACAGGGAGTTCATTCCA
66 CTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
23458981 TGTTTAAGCA
Statistics
Matches: 708, Mismatches: 178, Indels: 63
0.75 0.19 0.07
Matches are distributed among these distances:
156 8 0.01
157 118 0.17
158 223 0.31
159 245 0.35
160 12 0.02
164 2 0.00
165 1 0.00
166 2 0.00
167 1 0.00
170 35 0.05
171 60 0.08
172 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GATCGACAGCACGCAGAGGGGGACCGAGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGGCCGG
CTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGAC
CAGATCAGACCGAGGGTTGCGGCAGTAG
Found at i:23458317 original size:159 final size:159
Alignment explanation
Indices: 23458146--23458989 Score: 649
Period size: 159 Copynumber: 5.3 Consensus size: 159
23458136 GCCCGTTTTG
* *
23458146 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGC
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGC
* * * *
23458211 AGC-GAGACCGACAGCATGCAGAGGGGGACCGGGTCGATCCCC-AGCTTGCTCATTTTGCCTCTC
66 AGCAG-GACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGA-CTTACGCATTCTGCCTCTC
* *
23458274 TGG-TCGGCTCAGCGCCCACACACTCGTTTCA
129 TGGCT-GGCTCAGCACCCACACACTCATTTCA
* * ** * **
23458305 TGGGTTGACTTAGGCATACGGAGTCCATTCCCA-GTCTAAG-ATCTGATCGGACTGAGGGTTGCA
1 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTG
* * *
23458368 GCAGCAGGATCGACAGCACGTA-A-GGGGACCGGGTCGATCTCCGACTTACGCATTCTGCCTCT-
64 GCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTC
* * * * * *
23458430 TCGGCTGACTGAGTACCCACAC-GTCTGTTTCG
129 T-GGCTGGCTCAGCACCCACACACTC-ATTTCA
* * * *
23458462 TGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGGGTTCTGGC
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGC
* * * ** * *
23458527 AG-TGAGACCAACAGCACACAGAGGGGGACTTGGTCGATCCCTGACTTACGCATTATGCCTCTCT
66 AGCAG-GACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCT
23458591 GGCTGGCTCAGCACCCACACACTCATTTCA
130 GGCTGGCTCAGCACCCACACACTCATTTCA
* ** * * * *
23458621 TGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCTGACCCGA-TCGAGGGTTGC
1 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACT-GAGGGTTGT
* * * * * *
23458683 GACAGCAGGATCGATAGCACGCAG-GGGGGACCGGGTTGATCCCCGACTTATGTATTCTGCCTCT
63 GGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCT
* ** * ** * *** *
23458747 CCGGCCAGCTGAGTGCCCGCATGTTCATTTCG
128 CTGGCTGGCTCAGCACCCACACACTCATTTCA
* * *
23458779 TGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACTGAGGGTTGTGGC
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGC
* * ** * *
23458844 AGCTGGACTGATAGCGGGATCGGCAGCACACAGAGGGGGACCGGG-CTGATCCTTGGCTTGCGCA
66 AGCAGGAC------C--GA----CAGCACGCAGAGGGGGACCGGGTC-GATCCCCGACTTACGCA
* * * ** * * *
23458908 TTATGCCTTTCTGGCCGATTGAGCACCCACACGCTCATTTCG
118 TTCTGCCTCTCTGGCTGGCTCAGCACCCACACACTCATTTCA
* * *
23458950 TGGGTTGG-TTAGGCACAGGGAGTTCATTCCATGTTTAAGC
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
23458990 ATACGAAGTT
Statistics
Matches: 532, Mismatches: 118, Indels: 59
0.75 0.17 0.08
Matches are distributed among these distances:
156 7 0.01
157 115 0.22
158 119 0.22
159 180 0.34
160 11 0.02
164 1 0.00
166 2 0.00
170 37 0.07
171 60 0.11
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGC
AGCAGGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCTG
GCTGGCTCAGCACCCACACACTCATTTCA
Found at i:23459754 original size:157 final size:157
Alignment explanation
Indices: 23458988--23460795 Score: 832
Period size: 158 Copynumber: 11.2 Consensus size: 157
23458978 CCATGTTTAA
* * * * * * * * *
23458988 GCATACGAAGTTCATTTCCA-GTCTAAGATCAGACCGAACTGAGGGTTGCGGTAGTAGGACCGAT
1 GCATACGGAGTTCA-TTCCATGTCTAAGATCTGATCGGACCGAGGGTTGTGGCAG-AGGATCGAC
* * * * * * * * *
23459052 AGCACGTAGGGGGGA-CTGGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGGTCGGTTGAGCG
64 AGCACGCAGGGGGGATC-GGGTCGATCCCCGGCTTGCGCATTCTGCCTTTTCGGTCGGCTCAGCA
* ** * * * **
23459116 CTCGTACGCCCGTTTCGTGGGTTGGTTTAAG
128 CCCACACACTCATTTCGTGGGTTGACTT-AG
* * ** * * *
23459147 G-ATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCGGATCGAGGGTTGTGGCAGCGGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGATCTGA-TCGGACCGAGGGTTGTGGCAG-AGGATCGAC
** * * * * * * ** *
23459210 AGCACGCAGAAGGGATCGGGTCAATCCACGGCTTGCGTATTATGCCTCTCCGACCGGCTCAGCGC
64 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTTCGGTCGGCTCAGCAC
*
23459275 CCACACACTCATTTCGTGGGTTCACTTAG
129 CCACACACTCATTTCGTGGGTTGACTTAG
*
23459304 GCATACGGAGTTCATTCC-TAGTCTAAGATCTGATCGGACCGAGGGTTGTGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCTGATCGGACCGAGGGTTGTGGCAG-AGGATCGAC
* * * * * * * * *
23459368 AGCACGCAGGGGGAATTGGGCCGATCCCCGGCTGGCACATTCTGCCTCTTCGGCCCGCTGAGCAC
64 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTTCGGTCGGCTCAGCAC
* * * *
23459433 CCACACGCCCGTTTCGTGGGTTGGCTTAG
129 CCACACACTCATTTCGTGGGTTGACTTAG
* * * ** ** * * * *
23459462 CCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCGGACTTAGGGGTTATGGCAGCGAGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAGATCTGA-TCGGACCGA-GGGTTGTGGCAGAG-GATCGA
* * * * *
23459526 CAGCACACAGAGGGGGACCGGGTCGATCACCGGCTTGCGCATTATGCC-TCTCTGGTCGGCTCAG
63 CAGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTTC-GGTCGGCTCAG
23459590 CACCCACACACTCATTTCGTGGGTTGACTTAG
126 CACCCACACACTCATTTCGTGGGTTGACTTAG
* * * * * **
23459622 GCATACAGAGTTCATTCCA-GTCTAAGATTTGATCAGACCGAGGGTTGCGGTAGTAGGATTTACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCTGATCGGACCGAGGGTTGTGGCAG-AGGATCGACA
* * * * * * *
23459686 GCACGTAGGGGGGATCGGGTTGATCCCCGGCTTACGCATTCTGCCTTTTCGATTGGCTGAGCGCC
65 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTTCGGTCGGCTCAGCACC
* * *
23459751 CACACGCTCATTTCGTGTGTTGGCTTAG
130 CACACACTCATTTCGTGGGTTGACTTAG
* ** *
23459779 GCATACGGAGTTCATTCCATGTCTAAG-CCCCAGCCGGACCGAGGGTTGTGGCAACAAGACCAAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCTGA-TCGGACCGAGGGTTGTGG---C-AG------
* * * * * * *
23459843 AGCGGGATCGGCAGCACGCAGAAGGGGACCGAG-CTGATCCCCGGCTTGCACATTATGCCTTTCC
55 A---GGATCGACAGCACGCAG-GGGGGATCGGGTC-GATCCCCGGCTTGCGCATTCTGCCTTTTC
* * * * ** ** * *
23459907 GGCCAGCTGAGCGCCCGTATGCTCATTTCGTGGTTTGGCTTAG
115 GGTCGGCTCAGCACCCACACACTCATTTCGTGGGTTGACTTAG
* * * * *** * ** *
23459950 GCACATGGAGTTCATTCCATGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAAC
1 GCATACGGAGTTCATTCCATGTCTAAG-AT-CTGA--TCGGACCGAGGGT-TG-T-GG--C--A-
* * * ** * * *
23460015 CGAGGGTTGCAGCCGTAGGATCGACAGCACGTAAGGGGGATCGGGCCGATCTTCGACTTACGAAT
54 -GA-GGAT-C-GAC--A-G--C-AC-GCA-G---GGGGGATCGGGTCGATCCCCGGCTTGCGCAT
* * * * * ** * * * *
23460080 TCTGCCTCTCCGGCCGGCTGAGCGCCCGTACGGC-CGTTTCATGGGTTGGCTTAG
104 TCTGCCTTTTCGGTCGGCTCAGCACCCACAC-ACTCATTTCGTGGGTTGACTTAG
* ** ** * *
23460134 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACTGAGGGTTGTGGCA-ACGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCTGATCGGACCGAGGGTTGTGGCAGA--GGATCGAC
* * * * * *
23460198 AGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGTC-TCTCTGGTCGGCTCAGT
64 AGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTTC-GGTCGGCTCAGC
* * *
23460262 GCCCACACACTCGTTTCATGGGTTGACTTAG
127 ACCCACACACTCATTTCGTGGGTTGACTTAG
* ** * * * *
23460293 GCATACAGAGTTCATTCACA-GTCTAAGATCTGGCCGGATCGAGGGCTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTC-CATGTCTAAGATCTGATCGGACCGAGGGTTGTGGCAG-AGGATCGAC
* * * * * *
23460357 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTCCGCATTCTGCCTCTTCGGCCGGCTGAGCAC
64 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTTCGGTCGGCTCAGCAC
*
23460422 CCACACA-TCCGTTTCGTGGGTTGGA-TTAG
129 CCACACACT-CATTTCGTGGGTT-GACTTAG
* * * ** * * * *
23460451 CCATAGGGAGTTTATTCCATGTCTAAGCCCT-AGTCGGACTGAGGGTTGTGGTA-ATGAGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAGATCTGA-TCGGACCGAGGGTTGTGGCAGA-G-GATCGA
* * *** * ** * * *
23460514 CAGTACGCAGAGGGGGACCGGG-CAGATCCCTAACTTGCGCATTATG-CTGCTCTGGCCGGTTTA
63 CAGCACGCAG-GGGGGATCGGGTC-GATCCCCGGCTTGCGCATTCTGCCTTTTC-GGTCGGCTCA
* *
23460577 GCGCCCGCACACTCATTTCGTGGGTTGACTTAG
125 GCACCCACACACTCATTTCGTGGGTTGACTTAG
* * * * * * *
23460610 GCATACGAAGTTCATT-CTTAGTCTAAGATCTGACCGAATCGAGGGTTATGGCAACAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCTGATCGGACCGAGGGTTGTGGC-AGAGGATCGAC
* * * * * * * * * *
23460674 AGCATGCAAGAGGGGATCGGGTTGATCCCCGGTTTACGCATTCTGTCTCTTCGGCCGGCTGAGCG
64 AGCACGC-AGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTTCGGTCGGCTCAGCA
* * * * *
23460739 CCCGCACGCTCATTTCATGTGTTGGCTTAG
128 CCCACACACTCATTTCGTGGGTTGACTTAG
*
23460769 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
23460796 CCCCAGCTGG
Statistics
Matches: 1247, Mismatches: 321, Indels: 162
0.72 0.19 0.09
Matches are distributed among these distances:
156 1 0.00
157 104 0.08
158 426 0.34
159 355 0.28
160 96 0.08
161 3 0.00
162 5 0.00
163 2 0.00
164 1 0.00
166 1 0.00
167 2 0.00
169 2 0.00
170 15 0.01
171 94 0.08
172 4 0.00
173 2 0.00
174 5 0.00
175 7 0.01
176 2 0.00
177 6 0.00
178 5 0.00
179 2 0.00
180 9 0.01
181 3 0.00
182 3 0.00
184 89 0.07
185 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCTGATCGGACCGAGGGTTGTGGCAGAGGATCGACAG
CACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTTCGGTCGGCTCAGCACCC
ACACACTCATTTCGTGGGTTGACTTAG
Found at i:23459755 original size:317 final size:313
Alignment explanation
Indices: 23458988--23460801 Score: 1644
Period size: 317 Copynumber: 5.6 Consensus size: 313
23458978 CCATGTTTAA
* * * * * * *
23458988 GCATACGAAGTTCATTTCCAGTCTAAGATCAGA-CCGAACTGAGGGTTGCGGTAGTAGGACCGAT
1 GCATACG-AGTTCA-TTCCAGTCTAAGATCTGATCAG-ACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * *
23459052 AGCACGTAGGGGGGA-CTGGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGGTCGGTTGAGCG
63 AGCACGTAGGGGGGATC-GGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGCG
* ** *
23459116 CTCGTACGCCCGTTTCGTGGGTTGGTTTAAGG-ATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
127 CCCACACGCCCGTTTCGTGGGTTGGCTT-AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
* * * *
23459180 CGGA-TCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGA-AGGGATCGGGTCAATCCACGGCT
191 CGGACT-GAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGG-CGATCC-CGGCT
* * * *
23459243 TGCGTATTATGCCTCTCCGACCGGCTCAGCGCCCACACACTCATTTCGTGGGTTCACTTAG
253 TGCGCATTATGCCTCTCTGGCCGGCTCAGCGCCCACACACTCATTTCGTGGGTTGACTTAG
* * *
23459304 GCATACGGAGTTCATTCCTAGTCTAAGATCTGATCGGACCGAGGGTTGTGACAGCAGGATCGACA
1 GCATAC-GAGTTCATTCC-AGTCTAAGATCTGATCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * ** * * *
23459369 GCACGCAGGGGGAATTGGGCCGATCCCCGGCTGGCACATTCTGCCTCTTCGGCCCGCTGAGCACC
64 GCACGTAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGCGCC
*
23459434 CACACGCCCGTTTCGTGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
129 CACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
* * * *
23459499 ACTTAGGGGTTATGGCAGCGAGACCGGCAGCACACAGAGGGGGACCGGGTCGATCACCGGCTTGC
194 ACTGA-GGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGG-CGATC-CCGGCTTGC
* *
23459564 GCATTATGCCTCTCTGGTCGGCTCAGCACCCACACACTCATTTCGTGGGTTGACTTAG
256 GCATTATGCCTCTCTGGCCGGCTCAGCGCCCACACACTCATTTCGTGGGTTGACTTAG
* * * **
23459622 GCATACAGAGTTCATTCCAGTCTAAGATTTGATCAGACCGAGGGTTGCGGTAGTAGGATTTACAG
1 GCATAC-GAGTTCATTCCAGTCTAAGATCTGATCAGACCGAGGGTTGCGGCAGCAGGATCGACAG
** * ***
23459687 CACGTAGGGGGGATCGGGTTGATCCCCGGCTTACGCATTCTGCCTTTTCGATTGGCTGAGCGCCC
65 CACGTAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGCGCCC
* * * * *
23459752 ACACGCTCATTTCGTGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
130 ACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
* * * *
23459817 CCGAGGGTTGTGGCAACAAGACCAACAGCGGGATCGGCAGCACGCAGAAGGGGACCGAGCTGATC
195 CTGAGGGTTGT-G------G-----CAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGC-GAT-
* * * * * ** ** * *
23459882 CCCGGCTTGCACATTATGCCTTTCCGGCCAGCTGAGCGCCCGTATGCTCATTTCGTGGTTTGGCT
246 CCCGGCTTGCGCATTATGCCTCTCTGGCCGGCTCAGCGCCCACACACTCATTTCGTGGGTTGACT
23459947 TAG
311 TAG
* * * * **
23459950 GCACATGGAGTTCATTCCATGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAAC
1 GCATA-CGAGTTCATTCCA-GTCTAAG-AT-CTGA--TCA-GACC-G----AG---GG-------
** * * ** * *
23460015 CGAGGGTTGCAGCCGTAGGATCGACAGCACGTAAGGGGGATCGGGCCGATCTTCGACTTACGAAT
44 -TTGCG--GCAG-C--AGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCCGGCTTACGCAT
* ** * *
23460080 TCTGCCTCTCCGGCCGGCTGAGCGCCCGTACGGCCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
103 TCTGCCTCTTCGGCCGGCTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
* * *
23460145 TCATTCCATGTCTAAGCCCCAATCGGACTGAGGGTTGTGGCAACGGGACCGACAGCACGCAGAGG
168 TCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGG
* * * * *
23460210 GGGATCGGGCCGATCCTCGGCTTGCGCATTATGTCTCTCTGGTCGGCTCAGTGCCCACACACTCG
233 GGGACCGGG-CGATCC-CGGCTTGCGCATTATGCCTCTCTGGCCGGCTCAGCGCCCACACACTCA
*
23460275 TTTCATGGGTTGACTTAG
296 TTTCGTGGGTTGACTTAG
** * * * *
23460293 GCATACAGAGTTCATTCACAGTCTAAGATCTGGCCGGATCGAGGGCTGCGACAGCAGGATCGACA
1 GCATAC-GAGTTCATTC-CAGTCTAAGATCTGATCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
23460358 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTCCGCATTCTGCCTCTTCGGCCGGCTGAGCACC
64 GCACGTAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGCGCC
** * * * *
23460423 CACACATCCGTTTCGTGGGTTGGATTAGCCATAGGGAGTTTATTCCATGTCTAAGCCCTAGTCGG
129 CACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
* ** * * **
23460488 ACTGAGGGTTGTGGTAATGAGACCGGCAGTACGCAGAGGGGGACCGGGCAGATCCCTAACTTGCG
194 ACTGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGC-GATCCC-GGCTTGCG
* * *
23460553 CATTATG-CTGCTCTGGCCGGTTTAGCGCCCGCACACTCATTTCGTGGGTTGACTTAG
257 CATTATGCCT-CTCTGGCCGGCTCAGCGCCCACACACTCATTTCGTGGGTTGACTTAG
* * * ** *
23460610 GCATACGAAGTTCATTCTTAGTCTAAGATCTGA-CCGAATCGAGGGTTATGGCAACAGGATCGAC
1 GCATACG-AGTTCATTC-CAGTCTAAGATCTGATCAG-ACCGAGGGTTGCGGCAGCAGGATCGAC
* * * ** * *
23460674 AGCATGCAAGAGGGGATCGGGTTGATCCCCGGTTTACGCATTCTGTCTCTTCGGCCGGCTGAGCG
63 AGCACG-TAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGCG
* * * * * **
23460739 CCCGCACGCTCATTTCATGTGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAG
127 CCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
23460802 CTGGACCGCG
Statistics
Matches: 1209, Mismatches: 228, Indels: 120
0.78 0.15 0.08
Matches are distributed among these distances:
315 6 0.00
316 172 0.14
317 459 0.38
318 189 0.16
319 2 0.00
320 3 0.00
322 2 0.00
323 1 0.00
327 1 0.00
328 102 0.08
329 7 0.01
330 4 0.00
331 2 0.00
333 5 0.00
334 2 0.00
335 1 0.00
337 1 0.00
338 1 0.00
339 3 0.00
341 2 0.00
342 6 0.00
343 101 0.08
344 3 0.00
348 1 0.00
350 2 0.00
352 3 0.00
354 1 0.00
355 127 0.11
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (313 bp):
GCATACGAGTTCATTCCAGTCTAAGATCTGATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGC
ACGTAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCA
CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
TGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCGATCCCGGCTTGCGCATT
ATGCCTCTCTGGCCGGCTCAGCGCCCACACACTCATTTCGTGGGTTGACTTAG
Found at i:23460286 original size:159 final size:160
Alignment explanation
Indices: 23460031--23460798 Score: 666
Period size: 159 Copynumber: 4.8 Consensus size: 160
23460021 TTGCAGCCGT
* * ** * * *
23460031 AGGATCGACAGCACGTA-AGGGGGATCGGGCCGATCTTCGACTTACGAATTCTGCCTCTCCGGCC
1 AGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGCC
* * *
23460095 GGCTGAGCGCCCGTACGGC-CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
66 GGCTGAGCGCCCGCAC-ACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
*
23460159 AGCCCCAATCGGACT-GAGGGTTGTGGCAAC
130 AGCCCTAATCGGACTCGAGGGTTGTGGCAAC
* * * * * *
23460189 GGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGTCTCTCTGGTC
1 AGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGCC
* * * * *
23460254 GGCTCAGTGCCCACACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCACA-GTCTA
66 GGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTA
** *** * * * *
23460318 AGATCTGGCCGGA-TCGAGGGCTGCGACAGC
130 AGCCCTAATCGGACTCGAGGGTTGTGGCAAC
* * *
23460348 AGGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTCCGCATTCTGCCTCT-TCGGC
1 AGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCT-GGC
* * * * * * *
23460411 CGGCTGAGCACCCACACA-TCCGTTTCGTGGGTTGGATTAGCCATAGGGAGTTTATTCCATGTCT
65 CGGCTGAGCGCCCGCACACT-CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* *
23460475 AAGCCCTAGTCGGACT-GAGGGTTGTGGTAA-
129 AAGCCCTAATCGGACTCGAGGGTTGTGGCAAC
* * * * * *** * *
23460505 TGAGACCGGCAGTACGCAGAGGGGGACCGGGCAGATCCCTAACTTGCGCATTATG-CTGCTCTGG
1 AG-GACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCT-CTCTGG
* * * * * * *
23460569 CCGGTTTAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATT-CTTAGTC
64 CCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTC
** * * * *
23460633 TAAGATCTGA-CCGAATCGAGGGTTATGGCAAC
128 TAAGCCCTAATCGGACTCGAGGGTTGTGGCAAC
* * ** * *
23460665 AGGATCGACAGCATGCA-AGAGGGGATCGGGTTGATCCCCGGTTTACGCATTCTGTCTCT-TCGG
1 AGGACCGACAGCACGCAGAG-GGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCT-GG
* * * *
23460728 CCGGCTGAGCGCCCGCACGCTCATTTCATGTGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
64 CCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
23460793 AAGCCC
129 AAGCCC
23460799 CAGCTGGACC
Statistics
Matches: 479, Mismatches: 111, Indels: 39
0.76 0.18 0.06
Matches are distributed among these distances:
157 5 0.01
158 145 0.30
159 320 0.67
160 9 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (160 bp):
AGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGCC
GGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCCCTAATCGGACTCGAGGGTTGTGGCAAC
Found at i:23461268 original size:159 final size:159
Alignment explanation
Indices: 23461048--23461469 Score: 382
Period size: 159 Copynumber: 2.7 Consensus size: 159
23461038 GGGGGGATCG
* * * ** * * * *
23461048 GGCCGATCCTCGACTTACGCATTCTGCCTCTCCG-GTCGGCTGAGTGCCCGTACGC-CTGTTTCA
1 GGCCAATCCCCGACTTACGCAATAGGCCTCTCCGACT-GGCTCAGCGCCCGTACGCTC-GTTTCG
* * * * * * * **
23461111 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCGTGTCTAAGCCCTAGCCGGATCGAGGGTTGTGGC
64 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCGGACCAAGGGTAGCAGC
* *
23461176 AGCGGGACCGACAGCACGCAGAGGGCGACCG
129 AGCAGGACCGACAGCACGCAGAGGGCGACCA
* *
23461207 GGCCAATCCCCGACTTACGCAATAGGCCTCTTCGACTGGCTCAGGGCCCGTACGCTCGTTTCGTG
1 GGCCAATCCCCGACTTACGCAATAGGCCTCTCCGACTGGCTCAGCGCCCGTACGCTCGTTTCGTG
* * * **
23461272 GGTTGACTTATGCAAACGGAGTTCATTCCCA-GTCTAAGATCAAACCGGACCAAGGGTAGCAGCA
66 GGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAAACCGGACCAAGGGTAGCAGCA
* * * **
23461336 GCAGGATCGACAGCATGCAGGGGGCGAGTA
130 GCAGGACCGACAGCACGCAGAGGGCGACCA
* * * * ** ** * * * * *
23461366 GGTCGATCCCTGACTTGCGCGTTCTGCCTCTCCGGCTGGCTGAGCGCCTGTACGCTCATTTCGTA
1 GGCCAATCCCCGACTTACGCAATAGGCCTCTCCGACTGGCTCAGCGCCCGTACGCTCGTTTCGTG
*
23461431 GGTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
23461470 ATAGAAGTTC
Statistics
Matches: 208, Mismatches: 51, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
158 3 0.01
159 201 0.97
160 4 0.02
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (159 bp):
GGCCAATCCCCGACTTACGCAATAGGCCTCTCCGACTGGCTCAGCGCCCGTACGCTCGTTTCGTG
GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCGGACCAAGGGTAGCAGCAG
CAGGACCGACAGCACGCAGAGGGCGACCA
Found at i:23462202 original size:26 final size:26
Alignment explanation
Indices: 23462172--23462224 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23462162 GTTGACTTAG
*
23462172 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGATCATCCCCAGTCTAA
*
23462198 GCATACAGAGATCATTCCCAGTCTAA
1 GCATACAGAGATCATCCCCAGTCTAA
23462224 G
1 G
23462225 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGATCATCCCCAGTCTAA
Found at i:23462556 original size:157 final size:156
Alignment explanation
Indices: 23462198--23462564 Score: 382
Period size: 157 Copynumber: 2.3 Consensus size: 156
23462188 CCCAGTCTAA
* * * ** *
23462198 GCATACAGAGATCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-AAGGGTTGTGATAGCAGGACCGGCA
* * ** * * *
23462263 GCATGCAGGGGGATCAGACCGATCCCTGGCTTGTGCATTCTGCCTCTCCAGTCGGCTGAGCGCTC
65 GCACGCAGGGGGACCAGACCGATCCCCAGCTTGTGCATTATGCCTCTCCAGCCGGCTCAGCGCTC
** *
23462328 GCATGCCCATTTCATGGGTTGGCTTAG
130 GCACACCCATTTCATGGGTTGACTTAG
* ** * * *
23462355 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGAAGAAGGGTTGTGATAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAG-ACAAGGGTTGTGATAGCAGGACCGG
* * * * *
23462418 CAGCACGCAGAGGGGGACCGGGCTGATCCCCAGCTTGTGCATTATGCCTCTCCGGCCGGCTCAGT
63 CAGCACGC--AGGGGGACCAGACCGATCCCCAGCTTGTGCATTATGCCTCTCCAGCCGGCTCAGC
*
23462483 GC-C-CACACTCATTTCATGGGTTGACTTAG
126 GCTCGCACACCCATTTCATGGGTTGACTTAG
*
23462512 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CAAGGGTTGTGATA
23462565 ACAGNNNNNN
Statistics
Matches: 168, Mismatches: 34, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
156 7 0.04
157 107 0.64
158 8 0.05
159 46 0.27
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAAGGGTTGTGATAGCAGGACCGGCAG
CACGCAGGGGGACCAGACCGATCCCCAGCTTGTGCATTATGCCTCTCCAGCCGGCTCAGCGCTCG
CACACCCATTTCATGGGTTGACTTAG
Found at i:23463977 original size:26 final size:26
Alignment explanation
Indices: 23463941--23463994 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
23463931 GTTGGCTTAG
23463941 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23463967 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23463993 GC
1 GC
23463995 CACGGTGCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23464700 original size:26 final size:26
Alignment explanation
Indices: 23464650--23464702 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23464640 ATTGACTTAG
* *
23464650 GCATACGGAGTTCATCACCAGTCTAA
1 GCATACAGAGTTCATCACCAATCTAA
23464676 GCATACAGAGTTCATTC-CCAATCTAA
1 GCATACAGAGTTCA-TCACCAATCTAA
23464702 G
1 G
23464703 ATCGATCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCACCAATCTAA
Found at i:23465006 original size:158 final size:156
Alignment explanation
Indices: 23464731--23465334 Score: 624
Period size: 158 Copynumber: 3.8 Consensus size: 156
23464721 TGAGGTAGAA
* * ** * * *
23464731 GGATCGACAGCACGTAG-GGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCG
1 GGATCGACAGCACGCAGAGGGGGACCGACT-GATCCCCGGCTTGCGCATTATGCCTCTCCGACCG
* * * * *
23464795 GCTGAGCGCCCTTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCGAAG
65 GCTGAGCGCCCGTACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
*
23464860 CCCTAGCCAGACCGATGGTTGTGGCAGAG
130 CCC-AGTCAGACCGA-GGTTGTGGCAGAG
* *
23464889 GGATCGACAGCACGCAGAAGGGGACCGACTGATCCCCGGCTTGCGCATTATGCCTCTCCGACTGG
1 GGATCGACAGCACGCAGAGGGGGACCGACTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGG
* *
23464954 CTAAGCGCCCGTACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
66 CTGAGCGCCCGTACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-
*
23465019 CCCAGTC-GACCGAGGATTGTGGCAGCG
130 CCCAGTCAGACCGAGG-TTGTGGCAGAG
* * * * * *
23465046 GGATCGATAGCACGCAGAGGGGGATCAGGCCGATCCCCAGCTTGAGCATTATGCCTCTCCGACCG
1 GGATCGACAGCACGCAGAGGGGGA-CCGACTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCG
* * * *** * *
23465111 GCTCAGTGCCCGCACGTTCGGTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAA
65 GCTGAGCGCCCGTACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA
**
23465175 GATCAGATCAGACCGAGGGTTGTGGCAGCA-
129 GCCCAG-TCAGACCGA-GGTTGTGGCAG-AG
** * * * * * * *
23465205 GGATCGACAGCACATAG-GGGGGATCGAGCTGGTCCCCGGCTTGTGTATTTTACCTCTCCAACCG
1 GGATCGACAGCACGCAGAGGGGGACCGA-CTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCG
* * * * * * *
23465269 GATGAGTGCCCGTATACTCGTTTCGTTGGCTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 GCTGAGCGCCCGTACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
23465334 C
130 C
23465335 ATACAGAGTT
Statistics
Matches: 373, Mismatches: 62, Indels: 22
0.82 0.14 0.05
Matches are distributed among these distances:
156 2 0.01
157 45 0.12
158 281 0.75
159 43 0.12
160 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GGATCGACAGCACGCAGAGGGGGACCGACTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGG
CTGAGCGCCCGTACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
CCAGTCAGACCGAGGTTGTGGCAGAG
Found at i:23465321 original size:316 final size:315
Alignment explanation
Indices: 23464731--23465334 Score: 741
Period size: 316 Copynumber: 1.9 Consensus size: 315
23464721 TGAGGTAGAA
* * * * * *
23464731 GGATCGACAGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGG
1 GGATCGACAGCACGCAGGGGGGATCAGGCCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGG
* ** * * * *
23464796 CTGAGCGCCCTTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCGAAGC
66 CTCAGCGCCCGCACGCCCAGTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCGAAGA
* *
23464861 CCTAGCCAGACCGATGGTTGTGGCAGAGGGATCGACAGCACGCAGAAGGGGACCGACTGATCCCC
131 CCTAGCCAGACCGAGGGTTGTGGCAGAGGGATCGACAGCACACAGAAGGGGACCGACTGATCCCC
* * * * *
23464926 GGCTTGCGCATTATGCCTCTCCGACTGGCTAAGCGCCCGTACACCCGTTTCATGGGTTGGCTTAG
196 GGCTTGCGCATTATACCTCTCCAACCGGATAAGCGCCCGTACACCCGTTTCATGGGCTGGCTTAG
*
23464991 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGACCGAGGATTGTGGCAGCG
261 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGACCGAGGATTGTGGCAGCG
*
23465046 GGATCGATAGCACGCAGAGGGGGATCAGGCCGATCCCCAGCTTGA-GCATTATGCCTCTCCGACC
1 GGATCGACAGCACGCAG-GGGGGATCAGGCCGATCCCCAGCTT-ACGCATTATGCCTCTCCGACC
* ** * *
23465110 GGCTCAGTGCCCGCACGTTCGGTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTA
64 GGCTCAGCGCCCGCACGCCCAGTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCGA
* * * * *
23465174 AGATC-AGATCAGACCGAGGGTTGTGGCAGCA-GGATCGACAGCACATAG-GGGGGATCGAGCTG
128 AGACCTAG-CCAGACCGAGGGTTGTGGCAG-AGGGATCGACAGCACACAGAAGGGGACCGA-CTG
* * * * * * * * * *
23465236 GTCCCCGGCTTGTGTATTTTACCTCTCCAACCGGATGAGTGCCCGTATACTCGTTTCGTTGGCTG
190 ATCCCCGGCTTGCGCATTATACCTCTCCAACCGGATAAGCGCCCGTACACCCGTTTCATGGGCTG
23465301 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
255 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
23465335 ATACAGAGTT
Statistics
Matches: 241, Mismatches: 42, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
315 25 0.10
316 211 0.88
317 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (315 bp):
GGATCGACAGCACGCAGGGGGGATCAGGCCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGG
CTCAGCGCCCGCACGCCCAGTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCGAAGA
CCTAGCCAGACCGAGGGTTGTGGCAGAGGGATCGACAGCACACAGAAGGGGACCGACTGATCCCC
GGCTTGCGCATTATACCTCTCCAACCGGATAAGCGCCCGTACACCCGTTTCATGGGCTGGCTTAG
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGACCGAGGATTGTGGCAGCG
Found at i:23465336 original size:26 final size:26
Alignment explanation
Indices: 23465307--23465359 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23465297 GCTGGCTTAG
*
23465307 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
23465333 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
23465359 G
1 G
23465360 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:23465723 original size:26 final size:26
Alignment explanation
Indices: 23465687--23465738 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
23465677 GTTGACTTAG
23465687 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23465713 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23465739 CATCGAATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23466701 original size:26 final size:26
Alignment explanation
Indices: 23466653--23466704 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
23466643 TTGGCTTAGT
* **
23466653 CATATGGAGTTCAATCCTTGTCTAAG
1 CATACGGAGTTCAATCCCAGTCTAAG
*
23466679 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCAATCCCAGTCTAAG
23466705 AGTTTGAGCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCAATCCCAGTCTAAG
Found at i:23467404 original size:26 final size:26
Alignment explanation
Indices: 23467374--23467425 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23467364 GTTGACTTAG
23467374 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
23467400 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23467426 CATCAGACCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23467793 original size:158 final size:158
Alignment explanation
Indices: 23467452--23467900 Score: 446
Period size: 158 Copynumber: 2.8 Consensus size: 158
23467442 GGGTTGCGGC
*
23467452 AGCAGGATCGACAGCACGCAGGGGGGATCGAGCGTATCCTCGACTTGCGCATTCTGCCTCTCCGA
1 AGCAGGATCGACAGCACGCAGGGGGGATCG-GCG-ATCCTCGACTTGCGCATTCTGCCTCTCCGG
* * * * **
23467517 CCGGCTGAGCACCCGCACGCCCGTTTCGTGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
64 CTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
* * * *
23467582 AAGCCCCAACCGAACTGAGGGTTGTGCAGT
129 AAGACCCAACCGAACCGACGGTTGTGCAAT
** * * * * *
23467612 -G--GGATCGGTAGCATGTAGAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCG
1 AGCAGGATCGACAGCACGCAG-GGGGGATC-GG-CGATCCTCGACTTGCGCATTCTGCCTCTCCG
* * * *
23467674 GCTGGCTCAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCC-TAGT
63 GCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAT-GT
* ** ** *
23467738 CTAAGATCGGATGGGACCGACGG-T-TGCAAT
127 CTAAGACCCAACCGAACCGACGGTTGTGCAAT
* * * *
23467768 AGCAGGATCGACAGCACGCAGGGGGGA-CTGGAATGGTCCTCGACTTGTGCATTCTGCCTCTCCA
1 AGCAGGATCGACAGCACGCAGGGGGGATC-GG--CGATCCTCGACTTGCGCATTCTGCCTCTCCG
* *
23467832 G-TCGGCTGAGTGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
63 GCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
23467896 CTAAG
127 CTAAG
23467901 CATACGGAGT
Statistics
Matches: 232, Mismatches: 47, Indels: 22
0.77 0.16 0.07
Matches are distributed among these distances:
156 5 0.02
157 20 0.09
158 189 0.81
159 18 0.08
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
AGCAGGATCGACAGCACGCAGGGGGGATCGGCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCT
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
GACCCAACCGAACCGACGGTTGTGCAAT
Found at i:23467926 original size:26 final size:26
Alignment explanation
Indices: 23467874--23467926 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23467864 GTTGGCTTAG
*
23467874 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTATAA
*
23467900 GCATACGGAGTTCATTTCCA-GTATAA
1 GCATACAGAGTTCA-TTCCATGTATAA
23467926 G
1 G
23467927 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTATAA
Found at i:23468623 original size:26 final size:26
Alignment explanation
Indices: 23468593--23468648 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
23468583 TGGGTTGGCT
*
23468593 TAAGCATATGGAGTTCATTCC-ATGTC
1 TAAGCATATGAAGTTCATTCCTA-GTC
23468619 TAAGCATATGAAGTTCATTCCTAGTC
1 TAAGCATATGAAGTTCATTCCTAGTC
23468645 TAAG
1 TAAG
23468649 AGTTTGAGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (26 bp):
TAAGCATATGAAGTTCATTCCTAGTC
Found at i:23469343 original size:26 final size:26
Alignment explanation
Indices: 23469313--23469364 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23469303 GTTGACTTAG
23469313 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
23469339 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23469365 CATCAGACCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23469843 original size:26 final size:26
Alignment explanation
Indices: 23469813--23469865 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23469803 GTTGGCTTAG
23469813 GCATACAGAGTTCATTCCAT-GTCTAA
1 GCATACAGAGTTCATT-CATCGTCTAA
*
23469839 GCATACGGAGTTCATTCATCGTCTAA
1 GCATACAGAGTTCATTCATCGTCTAA
23469865 G
1 G
23469866 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCATCGTCTAA
Found at i:23470043 original size:26 final size:26
Alignment explanation
Indices: 23469996--23470047 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23469986 TTGGCTTAGA
*
23469996 CATACAGAGTTCATCCTTAGTCTAAG
1 CATACAGAGTTCATCCTCAGTCTAAG
*
23470022 CATATAGAGTTCATTCC-CAGTCTAAG
1 CATACAGAGTTCA-TCCTCAGTCTAAG
23470048 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATCCTCAGTCTAAG
Found at i:23470205 original size:184 final size:183
Alignment explanation
Indices: 23469655--23470206 Score: 546
Period size: 184 Copynumber: 3.0 Consensus size: 183
23469645 GTTGACTTAG
* * * *
23469655 GCATACAAAGTTCATTCCTAGTCTAAGATCGGA-TGGGACCGACGGTTGCAATAGCAGGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACT-GGACTGAGGGTTG-AATAGCAGGATCGAC
* * *** * * * * *
23469719 AGCACGCAGGGGGGACTGGAATGGTCCTCGACTTGTGCATTCTGCCTCTCC-AGTCGGCTGAGTG
64 AGCACGTAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGCG
* *
23469783 CCCGCAAGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
128 CCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCTATGTCTAA
* * * * * *
23469839 GCATACGGAGTTCATTCATC-GTCTAAGATTGGACCGGA-TCGAGGGTTGCA-A-CAGGA-CTAG
1 GCATACAGAGTTCATTC-CCAGTCTAAGATCGGACTGGACT-GAGGGTTGAATAGCAGGATCGA-
* * * * * * *
23469899 CAGCATGTAATGGGGGACCGGGCCAATTCC-CAGCTTGCGCATTCTACCTCTCCGACTGACTGAG
63 CAGCACGT-AGGGGGGACCGGGCCGA-TCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAG
* * * * *
23469963 CACCCGCACGCTCGTTTCGTAGGTTGGCTTAGACATACAGAGTTCATCCT-TAGTCTAA
126 CGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCTAT-GTCTAA
* *
23470021 GCATATAGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGTGATAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTG-AATAGCAGGATCGACA
* * *
23470086 GCACGTAGGGGGGTCCGGGCCGATCCTCGGCTTGGGTATTCTGCCTCTCCGACCGGCTGAGCGCC
65 GCACGTAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * * * **
23470151 CGCATGCCCATTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCTATGTCTAA
130 CGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCTATGTCTAA
23470205 GC
1 GC
23470207 CCCAGCCGGA
Statistics
Matches: 291, Mismatches: 61, Indels: 32
0.76 0.16 0.08
Matches are distributed among these distances:
180 2 0.01
181 13 0.04
182 123 0.42
183 10 0.03
184 128 0.44
185 13 0.04
186 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (183 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGAATAGCAGGATCGACAG
CACGTAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
GCAAGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCTATGTCTAA
Found at i:23470532 original size:26 final size:26
Alignment explanation
Indices: 23470496--23470548 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23470486 GTTGGCTTAG
*
23470496 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23470522 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23470548 G
1 G
23470549 AGTTTGAGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23471269 original size:26 final size:26
Alignment explanation
Indices: 23471219--23471269 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
23471209 GTTGACTTAG
* *
23471219 GCATACGGAGTTCATGCCCATTCTAA
1 GCATACAGAGTTCATGCCCAGTCTAA
**
23471245 GCATACAGAGTTCATTTCCAGTCTA
1 GCATACAGAGTTCATGCCCAGTCTA
23471270 TGATCAGACT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATGCCCAGTCTAA
Found at i:23471767 original size:26 final size:26
Alignment explanation
Indices: 23471718--23471770 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23471708 GTTGGCTTAG
*
23471718 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCACGTCTAA
*
23471744 GCATACGGAGTTCATT-CACCGTCTAA
1 GCATACAGAGTTCATTCCA-CGTCTAA
23471770 G
1 G
23471771 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCACGTCTAA
Found at i:23471925 original size:181 final size:182
Alignment explanation
Indices: 23471689--23472109 Score: 453
Period size: 183 Copynumber: 2.3 Consensus size: 182
23471679 AGCTGAGCGT
* * *
23471689 CCGCACGCACGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCC-ATGTCTAAGCATACGGA
1 CCGCACGCACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA-TCCTA-GTCTAAGCATACAGA
* *
23471753 GTTCATTCACC-GTCTAAGATTGGACCGGA-TCGAGGG-T-TG-CAGCAGGACTAG-CAGCATGT
64 GTTCATTC-CCAGTCTAAGATCGGACCGGACT-GAGGGTTGTGACAGCAGGA-TAGACAGCACGT
*
23471812 AAGGGGGACCGGGCCGATTCC-CAGCTTGCGCATTCTACCTCTCCGACTGACTGAGCAC
126 -AGGGGGACCGGGCCGA-TCCTCAGCTTGCGCATTCTACCTCTCCGACCGACTGAGCAC
* * * **
23471870 CCGCACGCTCGTTTCGTAGGTTGGCTTAGACATACGGAGTTCATCCTTAGTCTAAGCATTTAGAG
1 CCGCACGCACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCC-TAGTCTAAGCATACAGAG
* * *
23471935 TTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGTGATAGCAGGATCGACAGCACGTAGGG
65 TTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGACAGCAGGATAGACAGCACGTAGGG
* * * * * * *
23472000 GGTCCGGGCCGATCCTCGGCTTGGGTATTCTGCCTCTCCGACCGGCTGAGCGC
130 GGACCGGGCCGATCCTCAGCTTGCGCATTCTACCTCTCCGACCGACTGAGCAC
* * * * * * *
23472053 CCGCATGCCCATTTCATGGGTTGGCTTAGGTATAGGGAGTTCATTCTATGTCTAAGC
1 CCGCACGCACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCTA-GTCTAAGC
23472110 CCCAGCCGGA
Statistics
Matches: 200, Mismatches: 30, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
180 5 0.03
181 79 0.40
182 8 0.04
183 94 0.47
184 14 0.07
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (182 bp):
CCGCACGCACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCTAGTCTAAGCATACAGAGT
TCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGACAGCAGGATAGACAGCACGTAGGGG
GACCGGGCCGATCCTCAGCTTGCGCATTCTACCTCTCCGACCGACTGAGCAC
Found at i:23472400 original size:158 final size:155
Alignment explanation
Indices: 23471932--23472425 Score: 458
Period size: 159 Copynumber: 3.1 Consensus size: 155
23471922 TAAGCATTTA
* * *
23471932 GAGTTCATTCCCA-GTCTAAGATCGGACTGGACTGAGGGTTGTGATAGCAGGATCGACAGCACGT
1 GAGTTCATT-CCATGTCTAAGATCGGAC-GGAC-GAGGGTTGTGACAGCAGGATCGACAGCATGC
* * *
23471996 A-GGGGG-TCCGGGCCGATCCTCGGCTTGGGT-ATTCTGCCTCTCCGACCGGCTGAGCGCCCGCA
63 AGGGGGGAT-CGGGCCGATCCCCGACTT--GTCATTCTGCCTCTCCGACCGGCTGAGCGCCCGAA
* * * * *
23472058 TGCCCATTTCATGGGTTGGCTTAGGTATAGG
125 TGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* ** * * * * *
23472089 GAGTTCATTCTATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCATGCA
1 GAGTTCATTCCATGTCTAAG-ATCGGACGGA-CGAGGGTTGTGACAGCAGGATCGACAGCATGCA
* * * * * * * * **
23472154 GAGGGGGACCGGGTCGATCCCCGACTTGTGCATTATGTCTCTTCGATCGGTTCAGCGCGTGAATG
64 G-GGGGGATCGGGCCGATCCCCGACTTGT-CATTCTGCCTCTCCGACCGGCTGAGCGCCCGAATG
* *
23472219 CTTGTTTCGTGGGTTGACTTAGGCATACG
127 CTCGTTTCGTGGGTTGGCTTAGGCATACG
* * *
23472248 GACTTCATTCCCA-GTCTAAGATCGGATCGGATCGAGGGTTGCGACAGTAGGATCGACAGCATGC
1 GAGTTCATT-CCATGTCTAAGATCGGA-CGGA-CGAGGGTTGTGACAGCAGGATCGACAGCATGC
* * * * * *
23472312 AGGGGGGATCAGGCCGGTCCCCGACTTGCTCATTCTACCTCTCCGACCGACTGAGCGCCCGTACG
63 AGGGGGGATCGGGCCGATCCCCGACTTG-TCATTCTGCCTCTCCGACCGGCTGAGCGCCCGAATG
*
23472377 CTCGTTTCGTGGGTTGGCTTAGGCATATG
127 CTCGTTTCGTGGGTTGGCTTAGGCATACG
23472406 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
23472426 CATACGAAGT
Statistics
Matches: 262, Mismatches: 63, Indels: 23
0.75 0.18 0.07
Matches are distributed among these distances:
156 2 0.01
157 50 0.19
158 92 0.35
159 116 0.44
160 2 0.01
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.25
Consensus pattern (155 bp):
GAGTTCATTCCATGTCTAAGATCGGACGGACGAGGGTTGTGACAGCAGGATCGACAGCATGCAGG
GGGGATCGGGCCGATCCCCGACTTGTCATTCTGCCTCTCCGACCGGCTGAGCGCCCGAATGCTCG
TTTCGTGGGTTGGCTTAGGCATACG
Found at i:23472635 original size:196 final size:195
Alignment explanation
Indices: 23472296--23473014 Score: 843
Period size: 196 Copynumber: 3.7 Consensus size: 195
23472286 TTGCGACAGT
* * * * *
23472296 AGGATCGACAGCATGCAGGGGGGATCAGGCCGGTCCCCGACTTGCTCATTCTACCTCTCCGACC-
1 AGGATCGATAGCACGCAGGAGGGATCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCG-CCA
* * * *
23472360 GACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
65 GACTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
23472425 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAAGGTTGC-AGTAGCAGGACCAGT
130 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGATCGAGGGTTGCGA-CAGCAGGACCAGC
23472489 AGC
193 AGC
* * * *
23472492 AGGATCGATAGCATGCAAGAGGGATCAGGCCGATCCCCTACTTGCGCATTCTGCCTCTCCAGCCA
1 AGGATCGATAGCACGCAGGAGGGATCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCC-GCCA
* * * * **
23472557 G-TTGAGGGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAA
65 GACTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
23472621 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAGGACCAGCA
130 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGATCGAGGGTTGCGACAGCAGGACCAGCA
23472686 GC
194 GC
* * * * * * * * * *
23472688 AGGATTGGTAGCACGTAGGAGGGATCGGGTCAATCCCCGACTTTCGTATTCTACCTTTCCGGCAG
1 AGGATCGATAGCACGCAGGAGGGATCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGCCAG
* * * * * *
23472753 CCTGAGTGCCCGCACACTCATTTTGTGGGTTGGTTTAGGCATACGGAGTTCATTCCTTGTCTAAC
66 ACTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * *
23472818 CATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGATTGAGGGTTGCGACAGTAGGACCAGCAG
131 CATACGGAGTTCATTCCCAGTCTAAGATCGGAC-GGATCGAGGGTTGCGACAGCAGGACCAGCAG
23472883 C
195 C
* * * * * * * * *
23472884 AGGATTGGTAGCACGCAGGAGGGATCGGGTCGATCCTCGGCTTTCGTATTCTGCCTCTCCGGCCA
1 AGGATCGATAGCACGCAGGAGGGATCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCC-GCCA
* * * *
23472949 G-CTGAGCGCCCGCACACTCGTTTTGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATCTCTAA
65 GACTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
23473013 GC
130 GC
23473015 CCTAGTCGGA
Statistics
Matches: 456, Mismatches: 61, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
195 5 0.01
196 444 0.97
197 7 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (195 bp):
AGGATCGATAGCACGCAGGAGGGATCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGCCAG
ACTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCGGACGGATCGAGGGTTGCGACAGCAGGACCAGCAGC
Found at i:23472840 original size:26 final size:26
Alignment explanation
Indices: 23472792--23472842 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
23472782 TTGGTTTAGG
**
23472792 CATACGGAGTTCATTCCTTGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
*
23472818 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
23472843 GATCGGACTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:23473143 original size:26 final size:26
Alignment explanation
Indices: 23473114--23473166 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23473104 GTTGACTTAG
23473114 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
23473140 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
23473166 G
1 G
23473167 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:23473447 original size:158 final size:159
Alignment explanation
Indices: 23473226--23473642 Score: 382
Period size: 158 Copynumber: 2.6 Consensus size: 159
23473216 GGATCGACCC
* * * * * * ** * *
23473226 GATCCCCGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCATCCGTACGC-CTGTTTCGTGGGT
1 GATCCCCGGCCTGTGCATTATGCCTCTCCGGCCAGCTCAGCACCCAAACGCTC-ATTTCATGGGT
* * * *
23473290 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CC-AGACCGAGGGTTGTGGTAAC
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGA-ACCAAGGGTTGTAGTAAC
* *
23473353 GGGATCGACAGCATGCAGAGGGGGACAGGTC-
129 AGGATCGACAGCACGCAGA-GGGGACAGGTCT
23473384 GATCCCCGGCCTGCT-CATTATGCCTCTCCGGCCAGCTCAGCACCCAAACGCTCATTTCATGGGT
1 GATCCCCGGCCTG-TGCATTATGCCTCTCCGGCCAGCTCAGCACCCAAACGCTCATTTCATGGGT
** * * *
23473448 TAACTTAGGCATACGGAGCTCATT-C-TCGATCTAAG-ATCAGACCGAACCAAGGGTTGTAGTAG
65 TGGCTTAGGCATACGGAGTTCATTCCAT-G-TCTAAGCACCAGACCGAACCAAGGGTTGTAGTAA
* * *
23473510 TAGGATCGACAGCACGTAGAGGGGACCGGTCT
128 CAGGATCGACAGCACGCAGAGGGGACAGGTCT
* * * * * * * * * ** * *
23473542 GGTCCCTGGCTTGTGCATTCTGCCTCTTCGGTCGGTTGAGCACCCGCATGCTCGTTTCATGGGTT
1 GATCCCCGGCCTGTGCATTATGCCTCTCCGGCCAGCTCAGCACCCAAACGCTCATTTCATGGGTT
*
23473607 GGCTTAGTCATACGGAGTTCATTCCATGTCTAAGCA
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
23473643 TACGGAGTTC
Statistics
Matches: 207, Mismatches: 41, Indels: 21
0.77 0.15 0.08
Matches are distributed among these distances:
156 1 0.00
157 16 0.08
158 183 0.88
159 6 0.03
160 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
GATCCCCGGCCTGTGCATTATGCCTCTCCGGCCAGCTCAGCACCCAAACGCTCATTTCATGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCAAGGGTTGTAGTAACAG
GATCGACAGCACGCAGAGGGGACAGGTCT
Found at i:23473664 original size:26 final size:26
Alignment explanation
Indices: 23473615--23473666 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23473605 TTGGCTTAGT
*
23473615 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATATCTAAG
23473641 CATACGGAGTTCATTCCCA-ATCTAAG
1 CATACGGAGTTCATT-CCATATCTAAG
23473667 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATATCTAAG
Found at i:23473849 original size:26 final size:24
Alignment explanation
Indices: 23473820--23473869 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
23473810 GCATACGGAG
23473820 TTCATCCCCAGTCTAAGCATATAGAT
1 TTCATCCCCAGTCTAAG-AT-TAGAT
*
23473846 TTCATTCCCAGTCTAAGATTAGAT
1 TTCATCCCCAGTCTAAGATTAGAT
23473870 CAGACCGAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.22
25 2 0.09
26 16 0.70
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.34
Consensus pattern (24 bp):
TTCATCCCCAGTCTAAGATTAGAT
Found at i:23474189 original size:25 final size:25
Alignment explanation
Indices: 23474155--23474202 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
23474145 GGCTTAGGCG
23474155 TACGGAGTTCATT-CCATGTCTAACA
1 TACGGAGTTCATTCCCA-GTCTAACA
23474180 TACGGAGTTCATTCCCAGTCTAA
1 TACGGAGTTCATTCCCAGTCTAA
23474203 GAGTTTGAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (25 bp):
TACGGAGTTCATTCCCAGTCTAACA
Found at i:23479009 original size:51 final size:51
Alignment explanation
Indices: 23478933--23479043 Score: 204
Period size: 51 Copynumber: 2.2 Consensus size: 51
23478923 TTGGATCTCC
*
23478933 TCCCCTATGGAGTCTAGTGATGCAATGTGAGTCTCTACCCCTTCAAGCTTT
1 TCCCCCATGGAGTCTAGTGATGCAATGTGAGTCTCTACCCCTTCAAGCTTT
*
23478984 TCCCCCATGGAGTCTAGTGATGCAATGTGAGTCTCTACCCTTTCAAGCTTT
1 TCCCCCATGGAGTCTAGTGATGCAATGTGAGTCTCTACCCCTTCAAGCTTT
23479035 TCCCCCATG
1 TCCCCCATG
23479044 TCGCCCATGG
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.19, C:0.30, G:0.19, T:0.32
Consensus pattern (51 bp):
TCCCCCATGGAGTCTAGTGATGCAATGTGAGTCTCTACCCCTTCAAGCTTT
Found at i:23480384 original size:26 final size:26
Alignment explanation
Indices: 23480348--23480400 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23480338 GTTGACTTAG
*
23480348 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
*
23480374 GCATACGGAGTTCAATCCCAGTTTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
23480400 G
1 G
23480401 ATAGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:23480858 original size:26 final size:26
Alignment explanation
Indices: 23480822--23480874 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23480812 GTTGGCTTAG
23480822 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23480848 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23480874 G
1 G
23480875 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.