Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 233 of 402
Found at i:23481535 original size:171 final size:170
Alignment explanation
Indices: 23481243--23481558 Score: 436
Period size: 171 Copynumber: 1.9 Consensus size: 170
23481233 GGATCAGATC
* * * *
23481243 GAGGGTTACGACAGTAGGACCAGCAGTGAGATCAACAGCATGCAGGGGGGATCGGGTCGATCTCT
1 GAGGGTTACGACAGTAGGACCAGCAGCGAGATCAACAGCACGCAGGGGGGATCGGGTCGATCCCC
* * *
23481308 AACTTGCGCATTTTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTTGTTTTGTGGGTTGGCTTAG
66 AACTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAG
23481373 GCATACAGAGTTCATTCCATGTTTAAGCGCCAGTCGAACT
131 GCATACAGAGTTCATTCCATGTTTAAGCGCCAGTCGAACT
** * * *
23481413 GAGGGTTGTGACAGTAGGACCGGCAGCGAGATCGACAGCACGCAGAGGGTGATCGGG-CTGATCC
1 GAGGGTTACGACAGTAGGACCAGCAGCGAGATCAACAGCACGCAG-GGGGGATCGGGTC-GATCC
* * * * * *
23481477 CCGACTTGTGCATTATGCCTCTCCGACCGGTTGAGTGCCTGCATGCTCGTTTTGTGGGTTGACTT
64 CCAACTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTT
*
23481542 AGGCATACGGAGTTCAT
129 AGGCATACAGAGTTCAT
23481559 CCCCACTCTA
Statistics
Matches: 125, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
170 40 0.32
171 85 0.68
ACGTcount: A:0.20, C:0.24, G:0.32, T:0.25
Consensus pattern (170 bp):
GAGGGTTACGACAGTAGGACCAGCAGCGAGATCAACAGCACGCAGGGGGGATCGGGTCGATCCCC
AACTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAG
GCATACAGAGTTCATTCCATGTTTAAGCGCCAGTCGAACT
Found at i:23481583 original size:367 final size:352
Alignment explanation
Indices: 23480795--23481616 Score: 832
Period size: 367 Copynumber: 2.3 Consensus size: 352
23480785 GCTTGCGCCC
* *
23480795 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCA-GTCTAAGCATACGGAGTT
* * * * * *
23480860 CATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGACCAATAGCAGGATCGACA
65 CATT-CCAGTCTAAGATCGGATCAGAC-GAGGGTTACGACAGCAGGACCAACAGCAGGATCAACA
** *
23480925 GCACCCAGGGGAGGATCGGGCAGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCAC
128 GCACCCAGGGGAGGATCGGGCAGATCCCTAACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCAC
* * ***
23480990 CTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCA
193 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCAGACCA
*
23481055 GACTAAGGGTTGCGACAGCAGGATCGACAGCATGCAGGGGGGATCAGGCCAGTCCCCGACTTGTG
258 GACTAAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGATCAGGCCAGTCCCCGACTTGTG
* *
23481120 CATTCTACCTCTCCAGCTGGCTGAGTGCCT
323 CATTATACCTCTCCAGCCGGCTGAGTGCCT
* ** * *
23481150 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG-TCTATTCCTTGTCCAAGCATACAGAGT
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC-A-TCCCAGTCTAAGCATACGGAGT
* * * *
23481214 TCACTCCTAGTCTAAGATCGGATCAGATCGAGGGTTACGACAGTAGGACCAGCAG-TGAGATCAA
64 TCATTCC-AGTCTAAGATCGGATCAGA-CGAGGGTTACGACAGCAGGACCAACAGCAG-GATCAA
** * * *
23481278 CAGCATGCAGGGG-GGATCGGGTC-GATCTCTAACTTGCGCATTTTGCCTCTCCGACCGGCTGAG
126 CAGCACCCAGGGGAGGATCGGG-CAGATCCCTAACTTGCGCATTCTGCCTCTCCGACCAGCTGAG
* * * * * *
23481341 CGCCCGCACGCTTGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTTTAAGCGCCA
190 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ACCA
* * * * *
23481405 GTCGA-ACTGAGGGTTGTGACAGTAGGACCGGCAGCGAGATCGACAGCACGCAGAGGGTGATC-G
253 GACCAGACTAAGGG-T-TG-C-----GA-CAGCA--G-GATCGACAGCACGCAG-GGGGGATCAG
* * * *
23481468 GGCTGATCCCCGACTTGTGCATTATGCCTCTCC-GACCGGTTGAGTGCCT
305 GCCAG-TCCCCGACTTGTGCATTATACCTCTCCAG-CCGGCTGAGTGCCT
* * * * *
23481517 GCATGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCACTCTACGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACGGAGTT
* *
23481582 CATTTCCAGTCTATGATCGGACCAGACCGAGGGTT
65 CA-TTCCAGTCTAAGATCGGATCAGA-CGAGGGTT
23481617 GCAGCAGTAA
Statistics
Matches: 379, Mismatches: 62, Indels: 40
0.79 0.13 0.08
Matches are distributed among these distances:
353 3 0.01
354 102 0.27
355 114 0.30
356 5 0.01
357 1 0.00
362 2 0.01
363 4 0.01
365 1 0.00
366 21 0.06
367 121 0.32
368 5 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (352 bp):
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGGAGTTC
ATTCCAGTCTAAGATCGGATCAGACGAGGGTTACGACAGCAGGACCAACAGCAGGATCAACAGCA
CCCAGGGGAGGATCGGGCAGATCCCTAACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCACCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCAGACCAGAC
TAAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGATCAGGCCAGTCCCCGACTTGTGCAT
TATACCTCTCCAGCCGGCTGAGTGCCT
Found at i:23481869 original size:158 final size:156
Alignment explanation
Indices: 23481630--23482071 Score: 442
Period size: 158 Copynumber: 2.8 Consensus size: 156
23481620 GCAGTAAGAT
* * * * * *
23481630 CGACAGCACGCAGGGGGACCGAGCCAATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGTCTCAG
1 CGACAGCACGCAGGGGGACCG-GGCGATTCCCGGCTTGCGCATTCTGCCTCTCCGGCGGT-TCAG
* * * *
23481695 CTCCCGCACGCCTGTTTCGTGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
64 CGCCCGCACGCTTGTTTCGTGGGATGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCACCAG
* * *
23481760 -CCAGACCGACGGTTGTGGGAGCGGGAC
129 ACCAGACCAACGGTTGTGGCAGCAGGAC
* * * *
23481787 CGGCAGCACGCGAGGGGGACCGGGTCGATTCCCGGCTTACGCATTATGCCTCTTCGGTCGGTTCA
1 CGACAGCACGC-AGGGGGACCGGG-CGATTCCCGGCTTGCGCATTCTGCCTCTCCGG-CGGTTCA
* * * * *
23481852 GCGCCCGCACGCTTGTTTCGTGGGGTGACTTATGCATATGGAGTTCATTCCCA-ATCTAAG-ATC
63 GCGCCCGCACGCTTGTTTCGTGGGATGGCTTAGGCATATGGAGTTCATT-CCATGTCTAAGCACC
* * *
23481915 AGACCGGACCAAGGGTTGTGGCAGCAGGAT
127 AGACCAGACCAACGGTTGTGGCAGCAGGAC
* * * * *
23481945 TGACAACATGCAGGGGGGACCGGGCTG-TTCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGTTG
1 CGACAGCACGCA-GGGGGACCGGGC-GATTCC-CGGCTTGCGCATTCTGCCTCTCCG-GCGGTTC
* * * * * *
23482009 AGCGCCCGCACTCTCGTTCCGTGGGTTGGGTTAGGCATATGGAGTTCATTGCATGTCTAAGCA
62 AGCGCCCGCACGCTTGTTTCGTGGGATGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
23482072 TATGGAGTTC
Statistics
Matches: 231, Mismatches: 43, Indels: 20
0.79 0.15 0.07
Matches are distributed among these distances:
157 22 0.10
158 202 0.87
159 7 0.03
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (156 bp):
CGACAGCACGCAGGGGGACCGGGCGATTCCCGGCTTGCGCATTCTGCCTCTCCGGCGGTTCAGCG
CCCGCACGCTTGTTTCGTGGGATGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCACCAGAC
CAGACCAACGGTTGTGGCAGCAGGAC
Found at i:23482092 original size:26 final size:26
Alignment explanation
Indices: 23482043--23482095 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23482033 GTTGGGTTAG
*
23482043 GCATATGGAGTTCATTGCATGTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
23482069 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATATGGAGTTCATT-CCATGTCTAA
23482095 G
1 G
23482096 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATGTCTAA
Found at i:23482792 original size:26 final size:26
Alignment explanation
Indices: 23482756--23482806 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
23482746 TTGACTTAGG
23482756 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
*
23482782 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
23482807 GATCGGATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:23483086 original size:159 final size:158
Alignment explanation
Indices: 23482782--23483282 Score: 513
Period size: 158 Copynumber: 3.2 Consensus size: 158
23482772 CCAGTCTAAC
* * **
23482782 CATACGGAGTTCATTCCCA-GTCTAAGATCGGATTGGACCGAGGGTTGAGGCAGCAGGATCGACA
1 CATACGGAGTTCATT-CCATGTCTAAGACCAGACCGGACCGAGGGTTGAGGCAGCAGGATCGACA
* * * *
23482846 GCACGAAGGGGGGATCGAGTCGATCCCCAGCTTGCGCATTCTACCTCTCTGACCGGCTGAGCG-T
65 GCACGAAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGAGCGGCTGAGCGCT
* *
23482910 CGGCATGCCCGTTTCATGGGTTGGCTTAGG
130 C-GCACGCTCGTTTCATGGGTTGGCTTAGG
* * * * *
23482940 CATAGGGAGTTCATTCCATTTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGTAGC-GAGA-CTGA
1 CATACGGAGTTCATTCCATGTCTAAG-ACCAGACCGGACCGAGGGTTGAGGCAGCAG-GATC-GA
* * *
23483002 CAGCACGCAGAGGGGGA-CTGGGTTGATCCCCGGCTTGCGCATTAC-ACCTCTCCGAGCGACTCG
63 CAGCACGAAG-GGGGGATC-GGGTCGATCCCCGGCTTGCGCATT-CTACCTCTCCGAGCGGCT-G
23483065 -GCGCTCGCACGCTCGTTTCATGGGTTGAG-TTAGG
124 AGCGCTCGCACGCTCGTTTCATGGGTTG-GCTTAGG
* * * * *
23483099 CATACAGAGTTCATTCCCA-GTCTAAGATCAGATCAGACCGAGGGTTGCA-GCAGCAGGATCGAT
1 CATACGGAGTTCATT-CCATGTCTAAGACCAGACCGGACCGAGGGTTG-AGGCAGCAGGATCGAC
* * * * * * *
23483162 AGCACGTAGGGGGGATCGGGCCGGTCCCCGGCTTGTGCATTCTACATCTTCG-GCTGGCTGAGCA
64 AGCACGAAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGAGC-GGCTGAGCG
*
23483226 CCCGCACGCTCGTTTCATGGGTTGGCTTAGG
128 CTCGCACGCTCGTTTCATGGGTTGGCTTAGG
*
23483257 CATACGGAGTTCATTCCATGCCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
23483283 CATATGGAGT
Statistics
Matches: 282, Mismatches: 40, Indels: 42
0.77 0.11 0.12
Matches are distributed among these distances:
157 13 0.05
158 141 0.50
159 118 0.42
160 10 0.04
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
CATACGGAGTTCATTCCATGTCTAAGACCAGACCGGACCGAGGGTTGAGGCAGCAGGATCGACAG
CACGAAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGAGCGGCTGAGCGCTC
GCACGCTCGTTTCATGGGTTGGCTTAGG
Found at i:23483673 original size:26 final size:26
Alignment explanation
Indices: 23483637--23483689 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23483627 GTTGACTTAG
*
23483637 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
23483663 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
23483689 G
1 G
23483690 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23484041 original size:366 final size:364
Alignment explanation
Indices: 23483344--23484253 Score: 979
Period size: 366 Copynumber: 2.5 Consensus size: 364
23483334 AGTAGGACCA
* * **
23483344 GTAGCAGGATCGGTAGCACGCAGGAAGGGATCGGGTCGATCACCGGCTTACGCATTCTGCCTCTT
1 GTAGCAGGATCGGTAGCACGCAGG--GAGATCGGGCCGATC-CCGGCTTGTGCATTCTGCCTCTT
* * * * * * *
23483409 CGATCGACTGAGCGCTCGCATGCTCATTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATG
63 CGACCGACTGAGCCCT-GCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* * * * **
23483474 TCTAAGCACCAATCAGACTGAGGGTTGTGGTAGCAGGACCGGCAGTGGGATCGACAGCACGCAGA
127 TCTAAGCACCAATCGGACTGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATCGACAGCACAAAGA
* ** *
23483539 GGGTTACCGGGCTGATCCCCGACATGTGCCTTTTGCCTCTCCGACTGGCCTCTCCGGCCGGTTGA
192 AGGAGACCGGGCTGATCCCCGA-ATGTGCCTTTTGCCTCTCCGACTGGCCTCTCCAGCCGGTTGA
*** * * * *
23483604 GTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
256 ACACCCGCACGCTCATTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAATCTAAGCATAC
**
23483669 AGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTACG
321 AGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTACG
*
23483713 GTAGCAGGATCGGTAGCACGCATGGGAGATCGAGCCGATCCCTGGCTTGTGCATTCTGCCTC-TC
1 GTAGCAGGATCGGTAGCACGCA-GGGAGATCGGGCCGATCCC-GGCTTGTGCATTCTGCCTCTTC
* *
23483777 TGACCGACTGAGCACCTGCACGCCCGTTTCATGGGTTGGCTTTGGCATAGGGAGTTCATT-CATG
64 -GACCGACTGAGC-CCTGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* * **
23483841 TCTAAGCTCCAGTCGGACTGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATCGGTAGCACAAAGA
127 TCTAAGCACCAATCGGACTGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATCGACAGCACAAAGA
* * * * * *
23483906 AGGAGATCGGGCTGATCCCCG-GT-TGCGTATTATGCCTCTCCGA-TGGGCTTCTCTAGTCGGTT
192 AGGAGACCGGGCTGATCCCCGAATGTGCCT-TT-TGCCTCTCCGACT-GGCCTCTCCAGCCGGTT
* * * * * *
23483968 GAACATCTGTACGCTCATTTTATGGGTTGACTTAAGCATACGGAGTTCATCCCCAATCTAGGCGT
254 GAACACCCGCACGCTCATTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAATCTAAGCAT
* * * *
23484033 ATAGAGTTCATTCCCTGTCTAAGATCAGATTGGACTGAGGGTTGCG
319 ACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTACG
** ** * * *
23484079 ACAGCAGGATCGACAGCACGCAAGAGGA-ACCGGGCTGATCCCCGGCTTGTGCATGCTGCCTCTT
1 GTAGCAGGATCGGTAGCACGC-AG-GGAGATCGGGCCGAT-CCCGGCTTGTGCATTCTGCCTCTT
** * * ** **
23484143 CGACCGGTTGAGCGCCCGCACACCCATTTCACAGGTTGGCTTAGGTGTAGGGAGTTCATTCCATG
63 CGACCGACTGAGC-CCTGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* * *
23484208 TCTAAGCCCCAATCGGA-TCGAGGGTTGTGGCAGCGGGATCGGCAGC
127 TCTAAGCACCAATCGGACT-GAGGGTTGTGGCAGCAGGACCGGCAGC
23484254 ACGTAGAGGG
Statistics
Matches: 452, Mismatches: 76, Indels: 28
0.81 0.14 0.05
Matches are distributed among these distances:
364 4 0.01
365 4 0.01
366 209 0.46
367 133 0.29
368 76 0.17
369 24 0.05
370 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (364 bp):
GTAGCAGGATCGGTAGCACGCAGGGAGATCGGGCCGATCCCGGCTTGTGCATTCTGCCTCTTCGA
CCGACTGAGCCCTGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
AGCACCAATCGGACTGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATCGACAGCACAAAGAAGGA
GACCGGGCTGATCCCCGAATGTGCCTTTTGCCTCTCCGACTGGCCTCTCCAGCCGGTTGAACACC
CGCACGCTCATTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGT
TCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTACG
Found at i:23484749 original size:26 final size:26
Alignment explanation
Indices: 23484713--23484765 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23484703 GTTGAATTAG
* *
23484713 GCATATAGAGTTAATCCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAATCTAA
* *
23484739 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTAATCCCCAATCTAA
23484765 G
1 G
23484766 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTAATCCCCAATCTAA
Found at i:23485091 original size:26 final size:26
Alignment explanation
Indices: 23485055--23485105 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
23485045 TTAGCCTAGG
*
23485055 CATACGGAGTTCATTCCATGTCTAAA
1 CATACGGAGTTCATTCCAAGTCTAAA
* *
23485081 CATATGGAGTTGATTCCAAGTCTAA
1 CATACGGAGTTCATTCCAAGTCTAA
23485106 GAGTTTGAGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCAAGTCTAAA
Found at i:23485821 original size:26 final size:26
Alignment explanation
Indices: 23485785--23485837 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23485775 GTTGACTTAG
*
23485785 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
23485811 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
23485837 G
1 G
23485838 ATTGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23486168 original size:26 final size:26
Alignment explanation
Indices: 23486138--23486189 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23486128 TTGACTTAGT
23486138 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
* *
23486164 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
23486190 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:23486517 original size:156 final size:157
Alignment explanation
Indices: 23486163--23486526 Score: 495
Period size: 157 Copynumber: 2.3 Consensus size: 157
23486153 CCCAGTCTAA
* * *
23486163 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * *
23486228 GCACGCAGGGGGGACCGGGCCGGTCCCCAGCTTGCGCATTCTACCCTCCGGCTGGCTGAGTGCCC
66 GCACGCAGGGGGGAACGGGCCGATCCCCAGCTTGAGCATTCTACCCTCCGGCTGGCTGAGCGCCC
* *
23486293 GTACGCCCATTTCGTGGGTTGGCTTAG
131 GCACGCCCATTTCGTAGGTTGGCTTAG
* **
23486320 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCTA-GATCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGC-AGGATCG
* * *
23486382 GCAGCACGCAGGGGGGAACGGGCCGATCCCC-GCTTGAGCATTCTGCCTCTTCGGCTGGCTGAGC
63 ACAGCACGCAGGGGGGAACGGGCCGATCCCCAGCTTGAGCATTCTACC-CTCCGGCTGGCTGAGC
* *
23486446 GCCCGCACG-TCGTTTCGTAGGTTGGCTTAG
127 GCCCGCACGCCCATTTCGTAGGTTGGCTTAG
*
23486476 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGG
23486527 TAGTAGGACC
Statistics
Matches: 180, Mismatches: 21, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
155 3 0.02
156 73 0.41
157 100 0.56
158 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.21
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGAACGGGCCGATCCCCAGCTTGAGCATTCTACCCTCCGGCTGGCTGAGCGCCC
GCACGCCCATTTCGTAGGTTGGCTTAG
Found at i:23486677 original size:26 final size:26
Alignment explanation
Indices: 23486647--23486699 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23486637 GTTGACTTAG
*
23486647 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
23486673 GCATATGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
23486699 G
1 G
23486700 ATCAGATAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:23486776 original size:510 final size:510
Alignment explanation
Indices: 23485868--23487014 Score: 1508
Period size: 510 Copynumber: 2.3 Consensus size: 510
23485858 TCGGTAGCAG
* * * * *
23485868 GATCGACAGCACGCA-GGGGGACCGGGCCGATCCCCGACTT-ACACATTCTGCCTCTCCGGCCGA
1 GATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGA-GCATTCTGCCTCTTCGGCTGG
* * *
23485931 TTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
65 TTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* *
23485996 CCCAGCCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCAAGATTGGCAGCATGCAGAAGGGGAC
130 ACCAGCCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCAAGATTGGCAGCACGCAGAAGGGGAC
* * * *
23486061 CGGGCTAATCCCCAGCTTACATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATG
195 CGGACTAATCCCCAGCTTACATTATGCCTCTCCGACAGACTGAGCGCCCGCACGCTCATTTCATG
* * *
23486126 GGTTGACTTAGTCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGA
260 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGA
* * * * * *
23486191 TCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGGTCCCC
325 TCAGACAGGACCGAGGGTTGCAGCAGCAGGATCGACAACACGCAGGGGGGACCAGGCCGATCCCC
* ** *
23486256 AGCTTGCGCATTCTACC-CTCCGGCTGGCTGAGTGCCCGTACGCCCATTTCGTGGGTTGGCTTAG
390 AGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAG
*
23486320 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCT-A
455 GCATA-GGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAG-TGA
* *
23486377 GATCGGCAGCACGCAGGGGGGAACGGGCCGATCCCCG-CTTGAGCATTCTGCCTCTTCGGCTGGC
1 GATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGAGCATTCTGCCTCTTCGGCTGGT
*
23486441 TGAGCGCCCGCACG-TCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-
66 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGC
* * * * * * * * * *
23486503 ATCAGACTGGACCGAGGGTTGTGGTAGTAGGACC-AGTAGCAGGATTGGTAGCCCGCAG-GGGTG
130 ACCAG-CCGAACCGAGGGTTGTGGCAGCAGGACCGA-CAGCAAGATTGGCAGCACGCAGAAGG-G
* * * * * **
23486566 GATCGGACTGATCCCCGGCTTGCGCATTTTGCCTCTCCGGTAGACTGAGCGCCCGCACGCTCATT
192 GACCGGACTAATCCCCAGCTT--ACATTATGCCTCTCCGACAGACTGAGCGCCCGCACGCTCATT
*
23486631 TCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGCC
255 TCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGCC
* *
23486696 TAAGATCAGATAGGACCGAGGGTTGCAGCAGCAGGATCGGCAACACGCAGGGGGGACCAGGCCGA
320 TAAGATCAGACAGGACCGAGGGTTGCAGCAGCAGGATCGACAACACGCAGGGGGGACCAGGCCGA
* * *
23486761 TCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCACCCGCACGCCCATTTCGTGGGTTGG
385 TCCCCAGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGG
* * *
23486826 CTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCAACTGGAGCGAGGGTTGTGGCAGTGT
450 CTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGTGA
* * * * *
23486887 GACCGGCAGCACGAAGAGGGGGACCGAGCCGATCCCCGACTTGTGCATTCTGCCTC-TC-GATCG
1 GATCGGCAGCACGCAG-GGGGGACCGGGCCGATCCCCGACTTGAGCATTCTGCCTCTTCGGCT-G
* * * * *
23486950 GTTGAGTGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGAAATTCATTCCATGTCTAAG
64 GTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
23487015 GATACAGAGT
Statistics
Matches: 553, Mismatches: 70, Indels: 27
0.85 0.11 0.04
Matches are distributed among these distances:
507 6 0.01
508 99 0.18
509 52 0.09
510 255 0.46
511 86 0.16
512 55 0.10
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (510 bp):
GATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGAGCATTCTGCCTCTTCGGCTGGT
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
CCAGCCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCAAGATTGGCAGCACGCAGAAGGGGACC
GGACTAATCCCCAGCTTACATTATGCCTCTCCGACAGACTGAGCGCCCGCACGCTCATTTCATGG
GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGAT
CAGACAGGACCGAGGGTTGCAGCAGCAGGATCGACAACACGCAGGGGGGACCAGGCCGATCCCCA
GCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGG
CATAGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGTGA
Found at i:23487809 original size:325 final size:325
Alignment explanation
Indices: 23487211--23487849 Score: 1005
Period size: 325 Copynumber: 2.0 Consensus size: 325
23487201 GGGTGCTGGT
*
23487211 ACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
1 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
23487276 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTCAAATGACAACACTTTTTT
66 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGACAACACTTTTTT
* *
23487341 CAAACAGTAACAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAATAAAA
131 CAAACAGTAACAAATCTTCTCCACCTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAATAAAA
* * ** *
23487406 ATACAAGGATCTCCTCTACCAAATTTGGGGCCAAAACTCTTTCCAAAAGAATTTTAAAAAATCCC
196 ATAAAAGGATCACCTCTACCAAATTTGGGAACAAAACTCTTTCCAAAAAAATTTTAAAAAATCCC
* **
23487471 AAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCACTTGGCATGAC
261 AAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCACTTGGCATGAC
23487536 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
1 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* **
23487601 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-AGGGACACTTTTT
66 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGA-CAACACTTTTT
* * *
23487665 TCAAAC-GATCACAAAATCTTCTCCACCTCGAGTTTTTGGCTGAATTTTTTTATGCATGCCAA-C
130 TCAAACAG-TAAC-AAATCTTCTCCACCTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAATA
* * * *
23487728 CAAATAAAAGGATCACCTCTACCAAATTTGGGAATAGAACTCTTTCTAAAAAAATTTTAAAAAAT
193 AAAATAAAAGGATCACCTCTACCAAATTTGGGAACAAAACTCTTTCCAAAAAAATTTTAAAAAAT
* * *
23487793 CCCGAACCACAAAAAGTTTCAAAAATCGTGAAAATTAGAAAACGGGTCGTCTTGCCA
258 CCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCA
23487850 GAAACTTCAC
Statistics
Matches: 286, Mismatches: 25, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
324 2 0.01
325 238 0.83
326 46 0.16
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.29
Consensus pattern (325 bp):
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGACAACACTTTTTT
CAAACAGTAACAAATCTTCTCCACCTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAATAAAA
ATAAAAGGATCACCTCTACCAAATTTGGGAACAAAACTCTTTCCAAAAAAATTTTAAAAAATCCC
AAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCACTTGGCATGAC
Found at i:23488364 original size:159 final size:158
Alignment explanation
Indices: 23488073--23488377 Score: 376
Period size: 159 Copynumber: 1.9 Consensus size: 158
23488063 GAATCGGACC
23488073 GAGGGTTGCGGTAGCAGGATCGACAGCATGCAGGAGGGACCAGGCTGATCCCCGACTTGGGCATT
1 GAGGGTTGCGGTAGCAGGATCGACAGCATGCAGGAGGGACCAGGCTGATCCCCGACTTGGGCATT
** * * * *
23488138 CTACCTCCCCAACCGACTGAGTGCTCGTACACCCGTTTCGTGGGTTGGCTTAAGCATAGGGAGTT
66 CTACCTCCCCAACCGACTGAGCACCCGCACACCCGTTTCGTGGGCTGGCTTAAGCATACGGAGTT
*
23488203 CATTTCATGTCTAAGCCCCAGCCAAACT
131 CATTCCATGTCTAAGCCCCAGCCAAACT
* * ** * * * * * * *
23488231 GAGGGTTGTGGTAGCGGGATCGGTAGCATGCAGAGGGGGATCGGGTTGATTCCCGGCTTGTGCAT
1 GAGGGTTGCGGTAGCAGGATCGACAGCATGCAG-GAGGGACCAGGCTGATCCCCGACTTGGGCAT
* * * * * * *
23488296 TCTGCCTCTCCAATCGACTGAGCACCCGCACGCTCGTTTCGTGGGCTGGCTTAGGCGTACGGAGT
65 TCTACCTCCCCAACCGACTGAGCACCCGCACACCCGTTTCGTGGGCTGGCTTAAGCATACGGAGT
23488361 TCATTCCATGTCTAAGC
130 TCATTCCATGTCTAAGC
23488378 ATACGGAGTT
Statistics
Matches: 121, Mismatches: 25, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
158 29 0.24
159 92 0.76
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GAGGGTTGCGGTAGCAGGATCGACAGCATGCAGGAGGGACCAGGCTGATCCCCGACTTGGGCATT
CTACCTCCCCAACCGACTGAGCACCCGCACACCCGTTTCGTGGGCTGGCTTAAGCATACGGAGTT
CATTCCATGTCTAAGCCCCAGCCAAACT
Found at i:23488389 original size:26 final size:26
Alignment explanation
Indices: 23488353--23488402 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
23488343 GGCTTAGGCG
23488353 TACGGAGTTCATT-CCATGTCTAAGCA
1 TACGGAGTTCATTCCCA-GTCTAAGCA
23488379 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
23488403 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:23489114 original size:26 final size:27
Alignment explanation
Indices: 23489077--23489131 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
23489067 CGTGGGATGA
*
23489077 CTTAGGCATACGGAGTTCATCCCCAGT
1 CTTAGGCATACGAAGTTCATCCCCAGT
*
23489104 CTTA-GCATACGAAGTTCATTCCCAGT
1 CTTAGGCATACGAAGTTCATCCCCAGT
23489130 CT
1 CT
23489132 AAGATCAGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (27 bp):
CTTAGGCATACGAAGTTCATCCCCAGT
Found at i:23489398 original size:159 final size:158
Alignment explanation
Indices: 23489149--23489610 Score: 525
Period size: 159 Copynumber: 2.9 Consensus size: 158
23489139 GACCAAATCA
* * *
23489149 AGGGTTGCGGTAGCAGGATCGATAGCACGCAGGGCGGACCGGGCCAATCCCCAGCTTGCGCATTC
1 AGGGTTGCGGTAGCAGGATCGATAGCACGCAGGGGGGACCCGGCCAATCCCCGGCTTGCGCATTC
* * * * *
23489214 TGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTC
66 TGCCTCTCCGGCCGGCTAAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
*
23489279 ATTCCATGTCTAAGCCCCAGCCAGACCG
131 ATTCCATGTCTAAGCCCCAACCAGACCG
* * *
23489307 AGGGTTGTGGTAGC-GAGACCGACAGCACGCAGAGGGGGACCCGGCCAATCCCCGGCTTGCGCAT
1 AGGGTTGCGGTAGCAG-GATCGATAGCACGCAG-GGGGGACCCGGCCAATCCCCGGCTTGCGCAT
* * * * * * *
23489371 TATGCCTCTTCGGCCGGCTCAGTGCCCGCATGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGT
64 TCTGCCTCTCCGGCCGGCTAAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
* ** *
23489436 TCATTCCCA-GTCTATGATCGAACCAGACCG
129 TCATT-CCATGTCTAAGCCCCAACCAGACCG
* * * ** * ** * * *
23489466 AAGGTTGCGGCAGTAGGATCGATAGCACATAGGGGGGA-CCGAGTCGGTCCTCGGCTTACACATT
1 AGGGTTGCGGTAGCAGGATCGATAGCACGCAGGGGGGACCCG-GCCAATCCCCGGCTTGCGCATT
* * * *
23489530 CTACCTCTCCGGCCGACTAAGTACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTT
65 CTGCCTCTCCGGCCGGCTAAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
23489595 CATTCCATGTCTAAGC
130 CATTCCATGTCTAAGC
23489611 ATACGGAGTT
Statistics
Matches: 249, Mismatches: 49, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
157 7 0.03
158 113 0.45
159 125 0.50
160 4 0.02
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
AGGGTTGCGGTAGCAGGATCGATAGCACGCAGGGGGGACCCGGCCAATCCCCGGCTTGCGCATTC
TGCCTCTCCGGCCGGCTAAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCCCCAACCAGACCG
Found at i:23489582 original size:158 final size:155
Alignment explanation
Indices: 23489104--23489609 Score: 518
Period size: 158 Copynumber: 3.2 Consensus size: 155
23489094 CATCCCCAGT
* *
23489104 CTTA-GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAATC-AAGGGTTGCGGTAGCAGGA
1 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCA-ACCAGACCGAA-GGTTGCGGTAG-AGGA
* * * *
23489167 TCGATAGCACGCAGGGCGGACCGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTG
63 TCGATAGCACGCAGGGGGGACC-GGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTA
* *
23489232 AGCGCCCGCACGCCCGTTTCGTGGGTTGG
127 AGTGCCCGCACGCTCGTTTCGTGGGTTGG
* * ** * * * *
23489261 CTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCGAGA
1 CTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAACCAGACCGAAGGTTGCGGTAGAG-GA
* * * *
23489325 CCGACAGCACGCAGAGGGGGACCCGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCT
63 TCGATAGCACGCAG-GGGGGA-CCGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCT
* * * *
23489390 CAGTGCCCGCATGCTTGTTTCGTGGGTTGA
126 AAGTGCCCGCACGCTCGTTTCGTGGGTTGG
* *
23489420 CTTAGGCATAC-AGAGTTCATTCCCAGTCTATGATCGAACCAGACCGAAGGTTGCGGCAGTAGGA
1 CTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATC-AACCAGACCGAAGGTTGCGGTAG-AGGA
** * ** * * * * *
23489484 TCGATAGCACATAGGGGGGACCGAGTCGGTCCTCGGCTTACACATTCTACCTCTCCGGCCGACTA
63 TCGATAGCACGCAGGGGGGACCG-GCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTA
*
23489549 AGTACCCGCACGCTCGTTTCGTGGGTTGG
127 AGTGCCCGCACGCTCGTTTCGTGGGTTGG
23489578 CTTAGGCATACGAAGTTCATT-CCATGTCTAAG
1 CTTAGGCATACGAAGTTCATTCCCA-GTCTAAG
23489610 CATACGGAGT
Statistics
Matches: 282, Mismatches: 53, Indels: 27
0.78 0.15 0.07
Matches are distributed among these distances:
157 14 0.05
158 137 0.49
159 125 0.44
160 6 0.02
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (155 bp):
CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAACCAGACCGAAGGTTGCGGTAGAGGATCG
ATAGCACGCAGGGGGGACCGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAGTG
CCCGCACGCTCGTTTCGTGGGTTGG
Found at i:23489620 original size:26 final size:26
Alignment explanation
Indices: 23489583--23489635 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23489573 GTTGGCTTAG
23489583 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
23489609 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
23489635 G
1 G
23489636 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:23489965 original size:171 final size:171
Alignment explanation
Indices: 23489641--23489965 Score: 368
Period size: 171 Copynumber: 1.9 Consensus size: 171
23489631 CTAAGATTAG
* *
23489641 ACCGGACCGAGGGTTGCGGCAGCAGGACCAGCATCAGGATCGAAAGCATGCAGGGGTGGACCGGG
1 ACCGGACCGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGAAAGCACGCAGGGGTGGACCGGG
* * * * * * *
23489706 CCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCATGCTTGTTTCATTGG
66 CCGATCCCCAGCTTACGCATTATGCCTCTCCGACCAGCTGAGCACCCACACGCTCGTTTCATGGG
* *
23489771 TTGGCTTAGTCATACTAAGTTCATTCCATGTCTAAGCCCCA
131 TTGACTTAGGCATACTAAGTTCATTCCATGTCTAAGCCCCA
* * * * * **
23489812 ACCGGATCGAGGGTTGTGGTAGTAGGACCGGCAGCAGGATCGGTAGCACGCAGAGGG-GGACCGG
1 ACCGGACCGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGAAAGCACGCAG-GGGTGGACCGG
* * * * * ** *
23489876 GCTGATCCTC-GACTTATGTATTATGCCTCTCCGGCCAGCTGAGTGCCCACACGCTCGTTTCGTG
65 GCCGATCCCCAG-CTTACGCATTATGCCTCTCCGACCAGCTGAGCACCCACACGCTCGTTTCATG
23489940 GGTTGACTTAGGCATAC-AGAGTTCAT
129 GGTTGACTTAGGCATACTA-AGTTCAT
23489966 CCCCAATCTA
Statistics
Matches: 125, Mismatches: 26, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
170 2 0.02
171 120 0.96
172 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (171 bp):
ACCGGACCGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGAAAGCACGCAGGGGTGGACCGGG
CCGATCCCCAGCTTACGCATTATGCCTCTCCGACCAGCTGAGCACCCACACGCTCGTTTCATGGG
TTGACTTAGGCATACTAAGTTCATTCCATGTCTAAGCCCCA
Found at i:23490476 original size:26 final size:26
Alignment explanation
Indices: 23490424--23490476 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23490414 GATGGTTTAG
*
23490424 GCATACAGAGTTCATTCCATGTGTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
23490450 GCATACGGAGTTCATTCC-TAGTCTAA
1 GCATACAGAGTTCATTCCAT-GTCTAA
23490476 G
1 G
23490477 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:23490859 original size:840 final size:838
Alignment explanation
Indices: 23489206--23491443 Score: 2599
Period size: 840 Copynumber: 2.6 Consensus size: 838
23489196 TCCCCAGCTT
*
23489206 GCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
1 GCGCATTCTGCCTCTCCGCT-GGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
* *
23489271 GGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCGAGACCGACAGCACG
65 GGGAGTTCATTCCATGTCTAAGCCCCAGCGA-ACCGAGGGTTGTGGCAGCG-GACCGACAGCACG
* * * * *
23489336 CAGAGGGGGACCCGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGTGCCCGCA
128 CAGAGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTATGCCTC-TCCGACGGCTCAGTGCCCGAA
* * * * * * *
23489401 TGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTATGATCGAACCAGACCG
191 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGATCG
* * * *
23489466 AAGGTTGCGGCAGTAGGATCGATAGCA-CATAGGGGGGACCGAGTCGGT-CCTCGGCTTACACAT
256 AGGGTTGCGGCAGCAGGATCGATAGCAGCA-A-GGGGGACCG-GACGGTCCCT-GGCTTACGCAT
* * **
23489529 TCTACCTCTCCGGCCGACTAAGTACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGT
317 TCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGT
* *
23489594 TCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCG
382 TCATTCCATGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCG
* * * *
23489659 GCAGCAGGACCAGCATCAGGATCGAAAGCATGCAGGGGTGGACCGGGCCGATCCCCAGCTTGCGC
447 GTAGCAGGACCAGCAGCAGGATCGAAAGCACGCAGGGG-GGACCGGGCCGATCCCCA-CTTGTGC
* * *
23489724 ATTCTGCCTCTCCGACCGGCTGAGCACCCGCATGCTTGTTTCATTGGTTGGCTTAGTCATACTAA
510 ATTCTGCCTCTCCGACCGGCTAAGCACCCGCACGCTTGTTTCATTGGTTGGCTTAGTCATACGAA
* * * * ** *
23489789 GTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGGTAGTAGGACCGGCAGCAGGATCG
575 GTTCATTCCATGTCTAAGCACCAACCGAACCGAGGGTTGTGGCAACAAGACCGGCAGCAGGATCG
* * * * * * *
23489854 GTAGCACGCAGAGGGGGACCGGGCTGATCCTCGACTTATGTATTATGCCTCTCCGGCCAGCTGAG
640 ATAGCACGCAGAGGGGGACAGGGCTGATCCTCGACTTACGCATTAAGCCTCTACGACCAGCTGAG
* *
23489919 TGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGTAGACG
705 TGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCAGACA
* *
23489984 GAGTTCATTCCAAGTCGAAGATCAGACCAGACCGAGGGTTGCGACAATAGGAT-CA-AC-A-A-C
770 GAGTTCACTCCAAGTCGAAGATCAGACCAGACCGAGGGTTGCGACAACAGGATACACACGAGACC
23490044 A-A-
835 AGAC
* * * *
23490046 GCGCATTCTGCCTCTCCGACTAGCTGAGTGCCCGCACGCCCGTTTTGTGGCTTGGCTTAGGCATA
1 GCGCATTCTGCCTCTCCG-CTGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
23490111 GGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCACG
65 GGGAGTTCATTCCATGTCTAAGCCCCAG-CGAACCGAGGGTTGTGGCAGC-GGACCGACAGCACG
* *
23490176 CA-ATGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGTTCAGTGCCCGT
128 CAGA-GGGGGA-CGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGA-CGGCTCAGTGCCCGA
* *
23490240 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATC
190 ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGATC
* * *
23490305 GAGGGTTGCTGCAGCAGGATCGATAGCATGCAGAGGGTGACCGGACGGTCCCTGACTTACGCATT
255 GAGGGTTGCGGCAGCAGGATCGATAGCA-GCA-AGGGGGACCGGACGGTCCCTGGCTTACGCATT
* * * * *
23490370 CTGCCTCTCCGGCCGATTGTGCGCCCCGCACGCTCGTTTCATGGGATGGTTTAGGCATAC-AGAG
318 CTGCCTCTCCGGCCGACTGAGCG-CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGA-AG
* * * ** * *
23490434 TTCATTCCATGTGTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACTAGACCGAAGGTTAC
381 TTCATTCCATGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGC
* * * * * *
23490499 GGTAACAGGACCAACAGCAGAATCGATAGCACGCAGGGGGGACCGAGCTGATCCCCGACTTGTGC
446 GGTAGCAGGACCAGCAGCAGGATCGAAAGCACGCAGGGGGGACCGGGCCGATCCCC-ACTTGTGC
*
23490564 ATTCT-CTCTCTCCGACCGGCTAAGCGCCCGCACGCTTGTTTCATTGGTTGGCTTAGGT-ATACG
510 ATTCTGC-CTCTCCGACCGGCTAAGCACCCGCACGCTTGTTTCATTGGTTGGCTTA-GTCATACG
* ** ** *
23490627 GAGTTCATTCCATGTCTAAGCACCAGTCGAACCGAGGGTTGTGGCAACAAGATTGGCAGCGGGAT
573 AAGTTCATTCCATGTCTAAGCACCAACCGAACCGAGGGTTGTGGCAACAAGACCGGCAGCAGGAT
* * * *
23490692 CGATAGCACGCAGAGGGGGACAGGGCTTATCCTCGACTTACGCATTAAGCCTCTACGATCGGTTG
638 CGATAGCACGCAGAGGGGGACAGGGCTGATCCTCGACTTACGCATTAAGCCTCTACGACCAGCTG
* * * * * *
23490757 AGTGCCCGCATGCTCGTTTCAG-GGGTTGACTTAGGCTTACGGAGTTCATCCCCAGTCTAAGCAT
703 AGTGCCCACACGCTCGTTTC-GTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCAG
* * * * * *
23490821 ACAGTGTTCACTCTAAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCAC
767 ACAGAGTTCACTCCAAGTCGAAGATCAGACCAGACCGAGGGTTGCGACAACAGGAT--ACA-CAC
23490886 GTAGGGGGGACCAGGCTGATCCCC
829 G-A-----GACCA----GA----C
* * *
23490910 GGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCGCCC-CACGCCCGTTTCATGGGTTGGCTTAG
1 -GC----GCATTCTGCCTCTC-CGCTGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* *
23490974 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGGACCGAGGGTTGTGGCAATG-GGACCGGA
60 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC-GAACCGAGGGTTGTGGC-A-GCGGACC-GA
* * * * *
23491038 CAGCACGCAGAGCGGGACTGGGCTGATCCACAGCTTGCGCATTATGCCTCTCCGACAGGCTCAGC
121 CAGCACGCAGAGGGGGAC-GGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGAC-GGCTCAGT
* * *
23491103 ACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGAT
184 GCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGAT
* * ** * *
23491168 CGGAAT-GAGGGTTGCGGCAGCAGGATTGACAGCACGCAAGGGGGAATGGGCTGGTCTCTGGCTT
249 CGG-ATCGAGGGTTGCGGCAGCAGGATCGATAGCA-GCAAGGGGGACCGGAC-GGTCCCTGGCTT
** ** * * * *
23491232 GTGCATTCTGCCTCTCCTACAGGCTGAGCGCCTGCATGCTCGTTTCGTGGGTTGGCTTAGGCATA
311 ACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
**
23491297 CGAAGTTCATTCCATG-CTAAGCATACAAAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGG
376 CGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGG
* * *
23491361 GTTGCGGTAGCAGGACCAGCAGCAGGAT-GACAGCACGCA-GGGGGATCGGGCCAATCCCCAACT
441 GTTGCGGTAGCAGGACCAGCAGCAGGATCGAAAGCACGCAGGGGGGACCGGGCCGATCCCC-ACT
*
23491424 TGTGCATTTTGCCTCTCCGA
505 TGTGCATTCTGCCTCTCCGA
23491444 TCAGCCCTTC
Statistics
Matches: 1178, Mismatches: 165, Indels: 85
0.82 0.12 0.06
Matches are distributed among these distances:
839 5 0.00
840 564 0.48
841 143 0.12
842 3 0.00
843 2 0.00
845 2 0.00
847 1 0.00
853 1 0.00
854 2 0.00
859 1 0.00
865 38 0.03
866 11 0.01
867 65 0.06
868 131 0.11
869 204 0.17
870 5 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (838 bp):
GCGCATTCTGCCTCTCCGCTGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGCGAACCGAGGGTTGTGGCAGCGGACCGACAGCACGCAG
AGGGGGACGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACGGCTCAGTGCCCGAACGCTC
GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGT
TGCGGCAGCAGGATCGATAGCAGCAAGGGGGACCGGACGGTCCCTGGCTTACGCATTCTGCCTCT
CCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCAT
GTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGA
CCAGCAGCAGGATCGAAAGCACGCAGGGGGGACCGGGCCGATCCCCACTTGTGCATTCTGCCTCT
CCGACCGGCTAAGCACCCGCACGCTTGTTTCATTGGTTGGCTTAGTCATACGAAGTTCATTCCAT
GTCTAAGCACCAACCGAACCGAGGGTTGTGGCAACAAGACCGGCAGCAGGATCGATAGCACGCAG
AGGGGGACAGGGCTGATCCTCGACTTACGCATTAAGCCTCTACGACCAGCTGAGTGCCCACACGC
TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCAGACAGAGTTCACTCC
AAGTCGAAGATCAGACCAGACCGAGGGTTGCGACAACAGGATACACACGAGACCAGAC
Found at i:23491278 original size:158 final size:156
Alignment explanation
Indices: 23490817--23491309 Score: 483
Period size: 158 Copynumber: 3.1 Consensus size: 156
23490807 CCCAGTCTAA
* * * * *
23490817 GCATACAGTGTTCACT-CTAAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGAC
1 GCATACAGAGTTCATTCCT-AGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * ** * *
23490881 AGCACGTAGGGGGGACCAGGCTGATCCCCGGCTTGTGCATTCTGCCTCT-CTGGCCGGCTGAGCG
65 AGCACGCAAGGGGGACTGGGCTGAT-CCCGGCTTGTGCATTCTGCCTCTCCT-ACAGGCTGAGCG
* * *
23490945 CCCCACGCCCGTTTCATGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
** ** * * *** *
23490974 GCATAGGGAGTTCATTCC-ATGTCTAAGCCCTAGCT-GGACCGAGGGTTGTGGCAATGGGACCGG
1 GCATACAGAGTTCATTCCTA-GTCTAAGATC-AGATCGGACCGAGGGTTGCGGCAGCAGGATC-G
* * * * * *
23491037 ACAGCACGCAGAGCGGGACTGGGCTGATCCACAGCTTGCGCATTATGCCTCTCCGACAGGCTCAG
63 ACAGCACGCA-AGGGGGACTGGGCTGATCC-CGGCTTGTGCATTCTGCCTCTCCTACAGGCTGAG
* * *
23491102 CACCCGAACGCTCGTTTCGTGGGTTGACTTAG
126 C-GCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** *
23491134 GCATACAGAGTTCATTCCTAGTCTAAGATCAGATCGGAATGAGGGTTGCGGCAGCAGGATTGACA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *
23491199 GCACGCAAGGGGGAATGGGCTGGTCTCTGGCTTGTGCATTCTGCCTCTCCTACAGGCTGAGCGCC
66 GCACGCAAGGGGGACTGGGCTGATC-CCGGCTTGTGCATTCTGCCTCTCCTACAGGCTGAGCGCC
*
23491264 TGCATGCTCGTTTCGTGGGTTGGCTTAG
130 -GCACGCTCGTTTCGTGGGTTGGCTTAG
23491292 GCATAC-GAAGTTCATTCC
1 GCATACAG-AGTTCATTCC
23491310 ATGCTAAGCA
Statistics
Matches: 264, Mismatches: 59, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 43 0.16
158 98 0.37
159 54 0.20
160 67 0.25
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAAGGGGGACTGGGCTGATCCCGGCTTGTGCATTCTGCCTCTCCTACAGGCTGAGCGCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:23491527 original size:26 final size:26
Alignment explanation
Indices: 23491498--23491550 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23491488 GTTGACTTAG
* *
23491498 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
23491524 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
23491550 G
1 G
23491551 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23491731 original size:26 final size:26
Alignment explanation
Indices: 23491683--23491734 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23491673 TTGGCTTAGC
* *
23491683 CATATGGAGTTCATTTCATGTCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
23491709 CATACGGAGTTCATTCCCA-GTCTAAG
1 CATACGGAGTTCATT-CCATGTCTAAG
23491735 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATGTCTAAG
Found at i:23492086 original size:26 final size:26
Alignment explanation
Indices: 23492036--23492088 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23492026 GGTTAGTTAG
*
23492036 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
23492062 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
23492088 G
1 G
23492089 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:23493049 original size:159 final size:159
Alignment explanation
Indices: 23492818--23493751 Score: 684
Period size: 159 Copynumber: 5.8 Consensus size: 159
23492808 AGGATCGGGT
* * ** * *
23492818 AGCATGCAG-GGGGGACCAGGTCGATCCCCGACTTATGCATTCTGCCTCTCCGGCCGGTTGAGCA
1 AGCATGCAGAGGGGGACCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGCTGAGCG
* * * * * * *
23492882 CCCGCACGCCCATTTCATGGGTCGACTTAGGCATAGGGAGTTCATT-GCATGTCTAAGCCCCAAC
66 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGACCCAAC
** *
23492946 CTGATTGAGGGTTGTGGTAGCGGGACCGAC
130 CTGACCGAGGGTTGTGGTAGCAGGACCGAC
* * * * *
23492976 AGCATGCAGAGGGGGATCAGGTCGATCCTCGACTTGTGCATTATGCCTCTCCGATCGGCTCAGCG
1 AGCATGCAGAGGGGGACCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGCTGAGCG
* * ***
23493041 CCCCCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACC
66 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCCAACC
** * * **
23493106 AAATCGAGGGTTATGGTAGCAGGATTGAC
131 TGACCGAGGGTTGTGGTAGCAGGACCGAC
* ** ** * * * *
23493135 GGCACACAG-GGGGGATTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCTATCGGCTGAGCA
1 AGCATGCAGAGGGGGACCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGCTGAGCG
* * * * **
23493199 CCCGCGCGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA--
66 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCCAACC
* * * *
23493262 TGGACCGAGGGTTGTAGCAGTAGGACCAGTAGT
131 T-GACCGAGGGTTGTGGTAGCAGGACC-G-A-C
* * * * *
23493295 AGGATCAGCAGCACACAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGTCG
1 AGCAT--GCAG-----A-GGGGGACCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCG
* * * * * *
23493360 GTTGAGCGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATT-CCATGTCTAA
58 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAA
* * * * *
23493424 GCCCCAGCCGGACTGAGGGTTGTGGTAGTAGGACCGAC
122 GACCCAACCTGACCGAGGGTTGTGGTAGCAGGACCGAC
* * * * * * * *
23493462 AGCACGCAGAGGGGGACTGGGTCGATCCTCGGCTTATGCATTATGCCTCT-C-ATGCTGGCTCAA
1 AGCATGCAGAGGGGGACCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGAT-C-GGCTGAG
* * *
23493525 CGTCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCAGA
64 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-C---
* * * * *
23493590 CCGAACC-GAATCGAGGGTTGCGGCAGTAGGATCGAC
125 CC-AACCTG-ACCGAGGGTTGTGGTAGCAGGACCGAC
* * * * ** * * *
23493626 AGCACGCAGTGGGGGACCGGGCCGATCCTCGACTTACGTATTCTGCCTCTTCGA-CTGGTTGAGC
1 AGCATGCAGAGGGGGACCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGATC-GGCTGAGC
* * *
23493690 ACCCGCACGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAG
65 GCCCGCA--C--GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
23493752 CATACAAAAG
Statistics
Matches: 615, Mismatches: 127, Indels: 58
0.77 0.16 0.07
Matches are distributed among these distances:
157 18 0.03
158 114 0.19
159 209 0.34
160 9 0.01
162 3 0.00
163 3 0.00
164 80 0.13
165 5 0.01
166 2 0.00
167 6 0.01
168 47 0.08
169 97 0.16
170 22 0.04
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
AGCATGCAGAGGGGGACCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCCAACC
TGACCGAGGGTTGTGGTAGCAGGACCGAC
Found at i:23493776 original size:27 final size:26
Alignment explanation
Indices: 23493725--23493778 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 26
23493715 GTTGGCTTAG
* *
23493725 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAAAGTTCATTCCATATCTAA
23493751 GCATACAAAAGTTCATTCCCA-ATCTAA
1 GCATAC-AAAGTTCATT-CCATATCTAA
23493778 G
1 G
23493779 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 6 0.25
27 15 0.62
28 3 0.12
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCATATCTAA
Found at i:23494663 original size:155 final size:154
Alignment explanation
Indices: 23494449--23494748 Score: 370
Period size: 155 Copynumber: 1.9 Consensus size: 154
23494439 GACTTAGGTG
* ** * * *
23494449 TACGAAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAGGGTTGTGGCAGTAGGATCGATAGCA
1 TACGAAGTTCATCCCCAGTCTAAGATCAAACCAAACTGAGGGTTGCGGCAGCAGGATCGACAGCA
* * * * *
23494514 CGCATGGAGGGATCGGGCC-AGTCCTCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCT
66 CGCAAGG-GGGATCGAGCCAAGTCC-CGACTTACGCATTCTGCCCCTCCGGCCGGCTGAGCACCC
*
23494578 GCACGCTCATTTCGTGGATTTAGGCA
129 GCACGCCCATTTCGTGGATTTAGGCA
* * * *
23494604 TACGGAGTTCATCCCCAGTCTAAGATCAAACTAGA-TCGAGGGTTGCGGCAGCAGTATCGACAGC
1 TACGAAGTTCATCCCCAGTCTAAGATCAAACCAAACT-GAGGGTTGCGGCAGCAGGATCGACAGC
* * *
23494668 ACGTAAGGGGGATCGAGCCAATTCCCGACTTACGCATTCTGCCCCTCTGGCCGGCTGAGCACCCG
65 ACGCAAGGGGGATCGAGCCAAGTCCCGACTTACGCATTCTGCCCCTCCGGCCGGCTGAGCACCCG
* *
23494733 TACGCCCTTTTCGTGG
130 CACGCCCATTTCGTGG
23494749 GTTTGCTTAG
Statistics
Matches: 122, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
154 60 0.49
155 62 0.51
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (154 bp):
TACGAAGTTCATCCCCAGTCTAAGATCAAACCAAACTGAGGGTTGCGGCAGCAGGATCGACAGCA
CGCAAGGGGGATCGAGCCAAGTCCCGACTTACGCATTCTGCCCCTCCGGCCGGCTGAGCACCCGC
ACGCCCATTTCGTGGATTTAGGCA
Found at i:23494954 original size:26 final size:26
Alignment explanation
Indices: 23494918--23494970 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23494908 GTTGGCTTAG
*
23494918 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23494944 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23494970 G
1 G
23494971 AGTGTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23495961 original size:159 final size:158
Alignment explanation
Indices: 23495750--23496145 Score: 436
Period size: 159 Copynumber: 2.5 Consensus size: 158
23495740 CGATCCCCTA
* * * * * *
23495750 CTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCTGCACACCCGTTTCGTGGGTTTGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTTGCTTAAGC
* * * * ** *
23495815 ACAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCGAGGGATGTGGCAGTAGGATCGGTAG
66 ATACGGAGTTCATTCCATGTCTAAG-ACCAGACTGGACCGAGGGATGCAGCAGTAGGATCGATAG
* *
23495879 CACGCAGAGGAGGACCGGGCAAATCCCTGG
130 CACACAG-GGAGGACCAGGCAAATCCCTGG
* * * * *
23495909 CTTGCGCATTATGCCTTTCCGGCCGGCTCAGCGCCCGAACGCTCGTTTCGTGGG-TTGACTTATG
1 CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTTG-CTTAAG
** * * * *
23495973 CATACAAAGTTCATTCCCTGTCTAAGATCAGACTGGATCGAGGGTTGCAGCAGTAGGATCGATAG
65 CATACGGAGTTCATTCCATGTCTAAGACCAGACTGGACCGAGGGATGCAGCAGTAGGATCGATAG
* * *
23496038 CACATAGGGGGGACCAGGCCAATCCCTGG
130 CACACAGGGAGGACCAGGCAAATCCCTGG
* * * * * *
23496067 CTTGTGCATTCTGGCTCTCCGGCCAGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAAGC
1 CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTTGCTTAAGC
23496132 ATACGGAGTTCATT
66 ATACGGAGTTCATT
23496146 TGATGCCTAA
Statistics
Matches: 193, Mismatches: 41, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
158 89 0.46
159 104 0.54
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTTGCTTAAGC
ATACGGAGTTCATTCCATGTCTAAGACCAGACTGGACCGAGGGATGCAGCAGTAGGATCGATAGC
ACACAGGGAGGACCAGGCAAATCCCTGG
Found at i:23496143 original size:27 final size:26
Alignment explanation
Indices: 23496113--23496170 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
23496103 GCACGCTCGT
* * *
23496113 TTCATGGGTTGGCTTAAGCATACGGAG
1 TTCATGGGAT-GCCTAAGCATACGAAG
**
23496140 TTCATTTGATGCCTAAGCATACGAAG
1 TTCATGGGATGCCTAAGCATACGAAG
23496166 TTCAT
1 TTCAT
23496171 TCCCAGTCTA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (26 bp):
TTCATGGGATGCCTAAGCATACGAAG
Found at i:23496156 original size:158 final size:159
Alignment explanation
Indices: 23495863--23496156 Score: 374
Period size: 158 Copynumber: 1.9 Consensus size: 159
23495853 GAGGGATGTG
* * * *
23495863 GCAGTAGGATCGGTAGCACGCAGAGGAGGACCGGGCAAATCCCTGGCTTGCGCATTATGCCTTTC
1 GCAGTAGGATCGATAGCACACAGAGGAGGACCAGGCAAATCCCTGGCTTGCGCATTATGCCTCTC
* * * *
23495928 CGGCCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTATGCATACAAAGTTCATTCCCTG
66 CGGCCAGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAAGCATACAAAGTTCATTCCATG
*
23495993 TCTAAGATCAGACTGGATCGAGGGTTGCA
131 CCTAAGATCAGACTGGATCGAGGGTTGCA
* * * * * *
23496022 GCAGTAGGATCGATAGCACATAG-GGGGGACCAGGCCAATCCCTGGCTTGTGCATTCTGGCTCTC
1 GCAGTAGGATCGATAGCACACAGAGGAGGACCAGGCAAATCCCTGGCTTGCGCATTATGCCTCTC
* * * * ** **
23496086 CGGCCAGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTTGATG
66 CGGCCAGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAAGCATACAAAGTTCATTCCATG
23496151 CCTAAG
131 CCTAAG
23496157 CATACGAAGT
Statistics
Matches: 112, Mismatches: 23, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
158 92 0.82
159 20 0.18
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
GCAGTAGGATCGATAGCACACAGAGGAGGACCAGGCAAATCCCTGGCTTGCGCATTATGCCTCTC
CGGCCAGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAAGCATACAAAGTTCATTCCATG
CCTAAGATCAGACTGGATCGAGGGTTGCA
Found at i:23496362 original size:26 final size:26
Alignment explanation
Indices: 23496326--23496378 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23496316 GTTGACTTAG
23496326 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23496352 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23496378 G
1 G
23496379 ATCTAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23496366 original size:196 final size:196
Alignment explanation
Indices: 23496020--23496399 Score: 458
Period size: 196 Copynumber: 1.9 Consensus size: 196
23496010 TCGAGGGTTG
* * * * ** ** *
23496020 CAGCAGTAGGATCGATAGCACATAGGGGGGACCAGGCCAATCCCTGGCTTGTGCATTCTGGCTCT
1 CAGCAGCAGGATCGACAGCACACAGGGGGGACCAGGCCAATCCCCGGCTTGCACATTCTACCTCC
* * * ***
23496085 CCGGCCAGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTTGAT
66 CCGGCCAGTTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCAT
* *
23496150 GCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGTGGCCGCAGGA
131 GCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAATCAGACCAAGGGTTGTGGCCGCAGGA
23496215 C
196 C
* * **
23496216 CAGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCACATTCTACCTCC
1 CAGCAGCAGGATCGACAGCACACAGGGGGGACCAGGCCAATCCCCGGCTTGCACATTCTACCTCC
* * * * *
23496281 CCGGCCGGCTT-AGCGCTCGTACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCC
66 CCGGCCAG-TTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAAGCATACGGAGTTCAT-CCC
* * * *
23496345 A-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCTAATCAGACCGAGGGTTG
129 ATGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAATCAGACCAAGGGTTG
23496400 CGGTAGCAGG
Statistics
Matches: 152, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
196 149 0.98
197 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.22
Consensus pattern (196 bp):
CAGCAGCAGGATCGACAGCACACAGGGGGGACCAGGCCAATCCCCGGCTTGCACATTCTACCTCC
CCGGCCAGTTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCAT
GCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAATCAGACCAAGGGTTGTGGCCGCAGGA
C
Found at i:23497605 original size:159 final size:160
Alignment explanation
Indices: 23497317--23497738 Score: 375
Period size: 159 Copynumber: 2.6 Consensus size: 160
23497307 TCGATCCTCA
* * * * * * *
23497317 GCTTGCGCATTATGCCTC-TCTGGCTGGCTCAACGCCCACACACTCGTTTCATGGGTTGACTTAG
1 GCTTACGCATTATGCCTCTTC-GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
** * * * * *
23497381 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCTGACCGGATCGAGGGTTATGACAGCAGGATCGA
65 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGA
*
23497444 CAGCACGTAGGGGGGGACCGGGTTGATCCCCG
129 CAGCACGCAGGGGGGGACCGGGTTGATCCCCG
* * * * * * *
23497476 GCTTACGCATTTTGCCTCTTCGGCCAGCTGAGTGCCCGTACGCTCATTTCGTGTGTTGGCTTAGG
1 GCTTACGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* *
23497541 AATACGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCAGGACCGACA
66 CATACGGAGTTCATTCCATGTCTAAGCCCCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGACA
* * * *
23497605 GCGAGATCGACAGCATGCAGAGGGTGACCGAGCTGATCCTCA
131 GC---A-CG-CAG---G--G-GGG-GACCGGGTTGATCCCCG
** * * *
23497647 GCTTGTGCATTATGCCTTTTCGGCCGGCTGAGCGCCCGCATGCTTGTTTCATGGGTTGGCTTAGG
1 GCTTACGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* *
23497712 CACACGGAGTTCATTCCATGTTTAAGC
66 CATACGGAGTTCATTCCATGTCTAAGC
23497739 ATATGGAGTT
Statistics
Matches: 205, Mismatches: 43, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
158 3 0.01
159 98 0.48
160 4 0.02
162 1 0.00
163 2 0.01
164 2 0.01
167 1 0.00
169 1 0.00
170 3 0.01
171 90 0.44
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (160 bp):
GCTTACGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGCCCCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGACA
GCACGCAGGGGGGGACCGGGTTGATCCCCG
Found at i:23498197 original size:157 final size:156
Alignment explanation
Indices: 23497737--23498553 Score: 635
Period size: 159 Copynumber: 5.2 Consensus size: 156
23497727 CCATGTTTAA
* * * * * * **
23497737 GCATATGGAGTTCGTTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTACGACAGTAGGATTGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCCGACCGGACCGAGGGTTACGACAGCAGGATCGAC
* ** * * *
23497801 AGCACGTAGGGGGACCGGACTGATCCTCGGCTTACGCATTCTACCTCTCCAGCCGGCTGAGCGCC
65 AGCACGCAGGGGGACCGGGTTGATCCCCGGCTTACGCATTCTGCCTCT-CGGCCGGCTGAGCGCC
** * *
23497866 CGTACGCTCGTTTCATGCGTTGGCTTAG
129 CACACACTCGTTTCATGGGTTGGCTTAG
* * * * ** * * *
23497894 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCGGACCGAGGGTTGTGGCAGC-GAGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAGATCCGA-CCGGACCGAGGGTTACGACAGCAG-GATCGA
** ** * *
23497957 CAGCACGCAGAGGGGGACCGGGTCAATCTTCGGCTTGA-GCATTATGCCTCTCTGGCCGGCTTAG
64 CAGCACGC--AGGGGGACCGGGTTGATCCCCGGCTT-ACGCATTCTGCCTCTC-GGCCGGCTGAG
* * *
23498021 CGTCCACACACTCGTTTCGTGGGTTGACTTAG
125 CGCCCACACACTCGTTTCATGGGTTGGCTTAG
* *
23498053 GCATACGGAGTTCATTCCCA-GTCTAAGATCTGACCGGACCGAGGGTTACAACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCCGACCGGACCGAGGGTTACGACAGCAGGATCGAC
* * * * *
23498117 AGCATGTAGGGGGACCGGGTTGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGACTGAGCACC
65 AGCACGCAGGGGGACCGGGTTGATCCCCGGCTTACGCATTCTGCCTC-TCGGCCGGCTGAGCGCC
* *
23498182 CACACGCTCGTTTCGTGGGTTGGCTTAG
129 CACACACTCGTTTCATGGGTTGGCTTAG
* * * * * * * * * *
23498210 CCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCAGACTGAGGGTT-CTAGTAGC-GAGACCG
1 GCATACGGAGTTCATTCCATGTCTAAGATCCGA-CCGGACCGAGGGTTACGA-CAGCAG-GATCG
** * *** * * * *
23498272 ACAGCACGCAGAGGAGGACTTGGTCGATCCCTAACTTGCGCATTATGCCTCTCTGGCCGGTTCAG
63 ACAGCACGCAG-GG-GGACCGGGTTGATCCCCGGCTTACGCATTCTGCCTCTC-GGCCGGCTGAG
** * *
23498337 CATCCACACACTCATTTCATGGGTTGACTTAG
125 CGCCCACACACTCGTTTCATGGGTTGGCTTAG
* * * * * * *
23498369 GCATACGAAGTTCATTCCCA-GTCTAAGATCTGACCGAATCGAGGGTTGCGACAGCAGGATTGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCCGACCGGACCGAGGGTTACGACAGCAGGATCGAC
* * * *
23498433 AGCACGCAGGGGGGACCGGGTTGATCCCCAGCTTACGTATTCTGCCTCTCCGACCAGCTGAGCGC
65 AGCACGCA-GGGGGACCGGGTTGATCCCCGGCTTACGCATTCTGCCTCT-CGGCCGGCTGAGCGC
* * ** *
23498498 CCGCACACTCATTTCATGTTTTGGCTTTG
128 CCACACACTCGTTTCATGGGTTGGCTTAG
23498527 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
23498554 CCCTAGCCGG
Statistics
Matches: 512, Mismatches: 122, Indels: 51
0.75 0.18 0.07
Matches are distributed among these distances:
156 15 0.03
157 167 0.33
158 90 0.18
159 224 0.44
160 16 0.03
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCCGACCGGACCGAGGGTTACGACAGCAGGATCGACA
GCACGCAGGGGGACCGGGTTGATCCCCGGCTTACGCATTCTGCCTCTCGGCCGGCTGAGCGCCCA
CACACTCGTTTCATGGGTTGGCTTAG
Found at i:23498317 original size:316 final size:316
Alignment explanation
Indices: 23497737--23500545 Score: 1601
Period size: 318 Copynumber: 8.6 Consensus size: 316
23497727 CCATGTTTAA
* * * * *
23497737 GCATATGGAGTTCGTTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGACAGTAGGATTGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGATCGAGGGTTACGACAGCAGGATTGATA
** * * * * *
23497802 GCACGTAGGGGGACCGGACTGATCCTCGGCTTACGCATTCTACCTCTCCAGCCGGCTGAGCGCCC
66 GCACGTAGGGGGACCGGGTTGATCCCCGGCTTACGCATTCTGCCTCTTCAGACGACTGAGCGCCC
*
23497867 GTACGCTCGTTTCATGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
131 GCACGCTCGTTTCATGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
* * * * * * **
23497932 CCGAGGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGGGGACCGGGTCAATCTTCGGCTTGAGC
196 CTGAGGGTTCTAGCAGCGAGACCGACAGCACGCAGAGGAGGACCGGGTCAATCCTCAACTTGAGC
* * *
23497997 ATTATGCCTCTCTGGCCGGCTT-AGCGTCCACACACTCGTTTCGTGGGTTGACTTAG
261 ATTATGCCTCTCTGGCCGG-TTCAGCATCCACACACTCATTTCATGGGTTGACTTAG
* * * *
23498053 GCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGACCGAGGGTTACAACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGATCGAGGGTTACGACAGCAGGATTGATA
* * * *
23498118 GCATGTAGGGGGACCGGGTTGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGACTGAGCACCC
66 GCACGTAGGGGGACCGGGTTGATCCCCGGCTTACGCATTCTGCCTCTTCAGACGACTGAGCGCCC
* * * * *
23498183 ACACGCTCGTTTCGTGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGA
131 GCACGCTCGTTTCATGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
* ** * *
23498248 CTGAGGGTTCTAGTAGCGAGACCGACAGCACGCAGAGGAGGACTTGGTCGATCC-CTAACTTGCG
196 CTGAGGGTTCTAGCAGCGAGACCGACAGCACGCAGAGGAGGACCGGGTCAATCCTC-AACTTGAG
23498312 CATTATGCCTCTCTGGCCGGTTCAGCATCCACACACTCATTTCATGGGTTGACTTAG
260 CATTATGCCTCTCTGGCCGGTTCAGCATCCACACACTCATTTCATGGGTTGACTTAG
* * *
23498369 GCATACGAAGTTCATTCCCAGTCTAAGATCTGACCGAATCGAGGGTTGCGACAGCAGGATTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGATCGAGGGTTACGACAGCAGGATTGATA
* * * * *
23498434 GCACGCAGGGGGGACCGGGTTGATCCCCAGCTTACGTATTCTGCCTC-TCCGACCAGCTGAGCGC
66 GCACGTA-GGGGGACCGGGTTGATCCCCGGCTTACGCATTCTGCCTCTTCAGACGA-CTGAGCGC
* * ** * * * *
23498498 CCGCACACTCATTTCATGTTTTGGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCG
129 CCGCACGCTCGTTTCATGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
* * * * * *
23498563 GACTGAGGGTTGTGGCAGCTGGACCAACAGCGGGATCGGCAGCACGCAGAGGGGGATCGGG-CTG
194 GACTGAGGGTTCTAGCAGC--GA--GAC--C--GA----CAGCACGCAGAGGAGGACCGGGTC-A
** * * * * * * * ** *
23498627 ATCCTCGGCTTGCGCATTACGCCTTTTTGGCCGGTTGAGCACCCGCATGCTCATTTCGTGGGTTG
246 ATCCTCAACTTGAGCATTATGCCTCTCTGGCCGGTTCAGCATCCACACACTCATTTCATGGGTTG
*
23498692 GCTTAG
311 ACTTAG
* * * * * * * * * *
23498698 GCACAGGGAGTTCATT-TCATGTTTAAGCATACGGAGTTTATTTCC-AATCTAAGATCAGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-AT-C-----TGA---CCGGATCGAGGGT--TA-C-G
* * ** * * *
23498761 ACTGAGGGTTGCGGTAGTAGGATTGATAGCACATAGGGGGGACTGGGCCGATCCTCGGCTTGCAC
51 AC--A-----GC---A---GGATTGATAGCACGTA-GGGGGACCGGGTTGATCCCCGGCTTACGC
* * * * ** * * * * *
23498826 ATTCTGCCTCTCCGGTCGGCTGAGCGGTCGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGA
102 ATTCTGCCTCTTCAGACGACTGAGCGCCCGCACGCTCGTTTCATGCGTTGGCTTAGGCATAGGGA
* * * * * *
23498891 GTTCATTCCATGTCTAAGCCCTAGCCGGA-TCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAG
167 GTTCATTCCATGTCTAAGCCCCAGTCGGACT-GAGGGTTCTAGCAGCGAGACCGACAGCACGCAG
* * ** * * * * **
23498955 AAG-GGACCGGGTCGATCCAT-GGCTTGCGTATTATGCCTCTCTGGCCAGCTCAGCGCCCACACA
231 AGGAGGACCGGGTCAATCC-TCAACTTGAGCATTATGCCTCTCTGGCCGGTTCAGCATCCACACA
* **
23499018 CTCGTTTTGTGGGTTGACTTAG
295 CTCATTTCATGGGTTGACTTAG
* ** * * * * *
23499040 GCATACGGAGTTCATTCCTAGTCTAAGATCTGATTGGATCGAAGATTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGATCGAGGGTTACGACAGCAGGATTGATA
* * ** * * * *
23499105 GCACGCAGGGGGGGCTCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCCG-CTGAGCG
66 GCACGTA-GGGGGAC-CGGGTTGATCCCCGGCTTACGCATTCTGCCTCTTCAG-ACGACTGAGCG
* * * * * *
23499169 TCCACACGCCCGTTTCGTGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
128 CCCGCACGCTCGTTTCATGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * * * * * * *
23499234 GGACTGAGGGTTGTGGCAGCGAGACCGACAGCATGCAGAGGGGGACCGAGCCGATCCTCGACTTG
193 GGACTGAGGGTTCTAGCAGCGAGACCGACAGCACGCAGAGGAGGACCGGGTCAATCCTCAACTTG
* * *
23499299 AGCATTATGCCTCTCTGGCCGGCTCAGCA-CCTACACACTCGTTTCGTGGGTTGACTTAG
258 AGCATTATGCCTCTCTGGCCGGTTCAGCATCC-ACACACTCATTTCATGGGTTGACTTAG
* * * * * * *
23499358 GCATATGGAGTTCATTCCCAGTCTAAGATTTGATCAGA-CTGAGGGTTGCGGCAGCAGGATTGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGATC-GAGGGTTACGACAGCAGGATTGAT
* * * * * **
23499422 AACACGTAAGGGGGACCGAGTTGATCCCTGGCTTACGCATTCTACCTCTTCAGTCGGTTGAGCGC
65 AGCACGT-AGGGGGACCGGGTTGATCCCCGGCTTACGCATTCTGCCTCTTCAGACGACTGAGCGC
* * * * *
23499487 CCGCACGCTCATTTCATGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCA
129 CCGCACGCTCGTTTCATGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
* * * *
23499552 GA-TCGAGGGTTGTGGCAGC-AGGACCAACAGCGAGATCGGCAGCACGCAAAAGGGGACCGGG-C
194 GACT-GAGGGTTCTAGCAGCGA-GACCGACAGC---A-C-GCAG-A-G-----GAGGACCGGGTC
* * ** * * * * * ** * ** * *
23499614 TGATCCCCGGCTTGCGCATTATGCCT-TTTCGGCCAGCTGAGCGCCCGCATGCTCATTTCGTGGT
245 -AATCCTCAACTTGAGCATTATGCCTCTCT-GGCCGGTTCAGCATCCACACACTCATTTCATGGG
*
23499678 TTGGCTTAG
308 TTGACTTAG
* * * ** * * * * *
23499687 GCACACGGAGTTCATT-CCATGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-AT-CTGA---C---CGGA-TCGAGGGTT--ACGACA
* * * ** ** * ** * * * * *
23499751 CCGAGGGTT-A-CG-ACAGTAGGATCGACAGCATGTAAGAGGGACCAGGCCGATCCTCGACT-TG
54 GC-AGGATTGATAGCAC-GTAGG-GGGAC--CGGGT-TGA--TCCCCGG-C-TTACGC-ATTCTG
* * ** * * * * *
23499812 CGC-ATTC-TACCTCTCCAGTCGGCTG-AGCGCTCGTACGCCCATTTCATGGGTTGGCTTAGGCG
108 C-CTCTTCAGACGACT-GAG-CGCCCGCA-CG--C-T-CG----TTTCATGCGTTGGCTTAGGCA
* * * * * ** *
23499874 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATTGGCAGCA
161 TAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTCTAGCAGCGAGACCGACAGCA
* ** * * ** * * ** * ***
23499939 CGCAGAGGGGGATTGGGCCGATCCTCGGCTTGCGCATTATGTCTCTCTGGTTGGCTCAGTGCCCA
226 CGCAGAGGAGGACCGGGTCAATCCTCAACTTGAGCATTATGCCTCTCTGGCCGGTTCAGCATCCA
*
23500004 CACACTCGTTTCATGGGTTGACTTAG
291 CACACTCATTTCATGGGTTGACTTAG
* * * * * * *
23500030 GCATACGGAGTTCATTCACAGTCTAAGATCTGATCGGACCGAGGGCTGC-AGCAGCATGATTGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGATCGAGGGTTACGA-CAGCAGGATTGAT
* * * * * * *
23500094 AGCATGCAGT-GGGGGAGCAGGTCGATCCCCGGATTGCACATTCTGCCTCTTC-GACAGGCTGAG
65 AGCA--C-GTAGGGGGACCGGGTTGATCCCCGGCTTACGCATTCTGCCTCTTCAGAC-GACTGAG
* * * * * * *
23500157 CGCCCACACACCCGTTTCGTGGGTTGGATTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
126 CGCCCGCACGCTCGTTTCATGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* * * ** * * * *
23500222 TCGGACTGAGGGTTATGGTAATGAGACTGACAGTACGCAGAGGGGGACCGGGTCGATCC-CTAAC
191 TCGGACTGAGGGTTCTAGCAGCGAGACCGACAGCACGCAGAGGAGGACCGGGTCAATCCTC-AAC
* *** *
23500286 TTGCGCATTATGCCTCTCTGGCCGGCTT-AGTGCCCGCACACTCATTTCATGGGTTGACTTAG
255 TTGAGCATTATGCCTCTCTGGCCGG-TTCAGCATCCACACACTCATTTCATGGGTTGACTTAG
* * * * * *
23500348 GCATACGAAGTTCATTCCCAGTCTAAGATCTAACCGAATCGAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGATCGAGGGTTACGACAGCAGGATTGATA
* * * * * * *
23500413 GCATGCAAGAGGGGATCGGGTTGATCCCCGACTTACGCATTCTGTCTC-TCCGACCGGCTGAGCG
66 GCACG-TAG-GGGGACCGGGTTGATCCCCGGCTTACGCATTCTGCCTCTTCAGA-CGACTGAGCG
* * * * *
23500477 CCCGCACACTCATTTCGTGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC
128 CCCGCACGCTCGTTTCATGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
23500542 GGAC
193 GGAC
23500546 CAAGGTTTAT
Statistics
Matches: 1961, Mismatches: 395, Indels: 272
0.75 0.15 0.10
Matches are distributed among these distances:
315 4 0.00
316 361 0.18
317 371 0.19
318 443 0.23
319 6 0.00
320 1 0.00
321 2 0.00
322 8 0.00
323 2 0.00
324 2 0.00
325 2 0.00
326 7 0.00
327 15 0.01
328 11 0.01
329 184 0.09
330 8 0.00
331 10 0.01
332 8 0.00
333 9 0.00
334 7 0.00
335 6 0.00
336 6 0.00
337 2 0.00
338 16 0.01
339 8 0.00
340 5 0.00
341 14 0.01
342 90 0.05
343 98 0.05
344 10 0.01
345 3 0.00
346 11 0.01
347 11 0.01
348 1 0.00
349 5 0.00
350 5 0.00
351 3 0.00
352 2 0.00
353 1 0.00
354 1 0.00
355 199 0.10
356 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (316 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGATCGAGGGTTACGACAGCAGGATTGATA
GCACGTAGGGGGACCGGGTTGATCCCCGGCTTACGCATTCTGCCTCTTCAGACGACTGAGCGCCC
GCACGCTCGTTTCATGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
CTGAGGGTTCTAGCAGCGAGACCGACAGCACGCAGAGGAGGACCGGGTCAATCCTCAACTTGAGC
ATTATGCCTCTCTGGCCGGTTCAGCATCCACACACTCATTTCATGGGTTGACTTAG
Found at i:23499209 original size:159 final size:159
Alignment explanation
Indices: 23498724--23500704 Score: 1008
Period size: 159 Copynumber: 12.2 Consensus size: 159
23498714 TCATGTTTAA
* * * * * * * *
23498724 GCATACGGAGTTTATTTCCA-ATCTAAGATCAGA-CCGGACTGAGGGTTGCGGTAGTAGGATTGA
1 GCATACGGAGTTCA-TTCCATGTCTAAGACCTGAGTCGGACTGAGGGTTGCGGCAGCAGGATCGA
* ** * * * *
23498787 TAGCACATAGGGGGGACTGGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCG
65 CAGCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCG
** ** * *
23498852 GTCGTACGCCCATTTCGTGGGTTGGCTTAG
130 CCCACACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
23498882 GCATAGGGAGTTCATTCCATGTCTAAGCCCT-AGCCGGA-TCGAGGGTTGTGGCAGCGGGATCGA
1 GCATACGGAGTTCATTCCATGTCTAAGACCTGAGTCGGACT-GAGGGTTGCGGCAGCAGGATCGA
** * * * * *
23498945 CAGCACGCAGAAGGGACCGGGTCGATCCAT-GGCTTGCGTATTATGCCTC-TCTGGCCAGCTCAG
65 CAGCACGCAGGGGGGACCGGGCCGATCC-TCGGCTTGCGCATTCTGCCTCTTC-GGCCGGCTGAG
* * *
23499008 CGCCCACACACTCGTTTTGTGGGTTGACTTAG
128 CGCCCACACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
23499040 GCATACGGAGTTCATTCC-TAGTCTAAGATCTGA-TTGGA-TCGAAGATTGCGACAGCAGGATCG
1 GCATACGGAGTTCATTCCAT-GTCTAAGACCTGAGTCGGACT-GAGGGTTGCGGCAGCAGGATCG
* *
23499102 ACAGCACGCAGGGGGGGCTCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCCGCTGAG
64 ACAGCACGCAGGGGGGAC-CGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAG
* *
23499167 CGTCCACACGCCCGTTTCGTGGGTTGGCTTAG
128 CGCCCACACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * *
23499199 CCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCGGACTGAGGGTTGTGGCAGC-GAGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAGACCTGAGTCGGACTGAGGGTTGCGGCAGCAG-GATCGA
* * * * * *
23499262 CAGCATGCAGAGGGGGACCGAGCCGATCCTCGACTTGAGCATTATGCCTC-TCTGGCCGGCTCAG
65 CAGCACGCAG-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTC-GGCCGGCTGAG
* * * *
23499326 CACCTACACACTCGTTTCGTGGGTTGACTTAG
128 CGCCCACACGCTCGTTTCGTGGGTTGGCTTAG
* ** * *
23499358 GCATATGGAGTTCATTCCCA-GTCTAAGATTTGA-TCAGACTGAGGGTTGCGGCAGCAGGATTGA
1 GCATACGGAGTTCATT-CCATGTCTAAGACCTGAGTCGGACTGAGGGTTGCGGCAGCAGGATCGA
* * * * ** * * * * *
23499421 CAACACGTAAGGGGGACCGAGTTGATCC-CTGGCTTACGCATTCTACCTCTTCAGTCGGTTGAGC
65 CAGCACGCAGGGGGGACCGGGCCGATCCTC-GGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGC
* * * *
23499485 GCCCGCACGCTCATTTCATGTGTTGGCTTAG
129 GCCCACACGCTCGTTTCGTGGGTTGGCTTAG
** * * * * *
23499516 GCATACGGAGTTCATTCCATGTCTAAG-CCCCAGCCAGA-TCGAGGGTTGTGGCAGCAGGACCAA
1 GCATACGGAGTTCATTCCATGTCTAAGACCTGAGTCGGACT-GAGGGTTGCGGCAGCAGGATCGA
* * * *
23499579 CAGCGAGATCGGCAGCACGCAAAAGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTTTTC
65 CAGC---A-C-GCAG---G-----GGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTC
* * * * *
23499644 GGCCAGCTGAGCGCCCGCATGCTCATTTCGTGGTTTGGCTTAG
117 GGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * * * *
23499687 GCACACGGAGTTCATTCCATGTTTAAGCATACGGAGTTCATTCCCAGTCT-AAGATTG-GACCAA
1 GCATACGGAGTTCATTCCATGTCTAAG-A-CCTGAG-----T--CGGACTGAGGGTTGCG-GC--
* * * * *
23499750 ACCGAGGGTTACGACAGTAGGATCGACAGCATGTAAGAGGGACCAGGCCGATCCTCGACTTGCGC
54 AGC-A-GGAT-CGAC---A-G--C-AC-GCA-G---GGGGGACCGGGCCGATCCTCGGCTTGCGC
* * * * * ** * * *
23499815 ATTCTACCTCTCCAGTCGGCTGAGCGCTCGTACGCCCATTTCATGGGTTGGCTTAG
104 ATTCTGCCTCTTCGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * * * *
23499871 GCGTAGGGAGTTCATTCCATGTCTAAG-CCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATTGGC
1 GCATACGGAGTTCATTCCATGTCTAAGACCTGAGTCGGACTGAGGGTTGCGGCAGCAGGATCGAC
** * * ** * *
23499935 AGCACGCAGAGGGGGATTGGGCCGATCCTCGGCTTGCGCATTATGTCTC-TCTGGTTGGCTCAGT
66 AGCACGCAG-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTC-GGCCGGCTGAGC
* * *
23499999 GCCCACACACTCGTTTCATGGGTTGACTTAG
129 GCCCACACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
23500030 GCATACGGAGTTCATTCACA-GTCTAAGATCTGA-TCGGACCGAGGGCTGCAGCAGCATGATTGA
1 GCATACGGAGTTCATTC-CATGTCTAAGACCTGAGTCGGACTGAGGGTTGCGGCAGCAGGATCGA
* * * * * * * * *
23500093 CAGCATGCAGTGGGGGAGCAGGTCGATCCCCGGATTGCACATTCTGCCTCTTCGACAGGCTGAGC
65 CAGCACGCAG-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGC
* * *
23500158 GCCCACACACCCGTTTCGTGGGTTGGATTAG
129 GCCCACACGCTCGTTTCGTGGGTTGGCTTAG
* * ** ** *
23500189 CCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCGGACTGAGGGTTATGGTA--ATGAGA-CT
1 GCATACGGAGTTCATTCCATGTCTAAGACCTGAGTCGGACTGAGGGTTGCGGCAGCA-G-GATC-
* * ** *
23500250 GACAGTACGCAGAGGGGGACCGGGTCGATCC-CTAACTTGCGCATTATGCCTC-TCTGGCCGGCT
63 GACAGCACGCAG-GGGGGACCGGGCCGATCCTC-GGCTTGCGCATTCTGCCTCTTC-GGCCGGCT
* * * * * * *
23500313 TAGTGCCCGCACACTCATTTCATGGGTTGACTTAG
125 GAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
23500348 GCATACGAAGTTCATTCCCA-GTCTAAGATCT-A-ACCGAATCGAGGGTTACGGCAGCAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGACCTGAGTCGGACT-GAGGGTTGCGGCAGCAGGATCG
* * * ** * * * * * *
23500410 ACAGCATGCAAGAGGGGATCGGGTTGATCCCCGACTTACGCATTCTGTCTCTCCGACCGGCTGAG
64 ACAGCACGC-AGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAG
* * * *
23500475 CGCCCGCACACTCATTTCGTGTGTTGGCTTAG
128 CGCCCACACGCTCGTTTCGTGGGTTGGCTTAG
** * * *
23500507 GCATACGGAGTTCATTCCATGTCTAAG-CCCCAGTCGGACCAAGGTTTATGGTAGCAGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGACCTGAGTCGGA-C-----TGAGGGTTGC--G---G-C
* * * * * * * *
23500571 AGCGGGATC-AGTAGCACGCAGAGGGGGACCGAGCTGATCCCCGACTTGCACATTATGCCT-TTC
54 AGCAGGATCGA-CAGCACGCAG-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTC
* * * *
23500634 TGGCCGGCTGAGCGCTCGCACGCTCGTTTCATGCGTTGGCTTAG
117 -GGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAG
* * *
23500678 GCACACAGAGTTCATTCCATGTTTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
23500705 CTTACGAAGT
Statistics
Matches: 1383, Mismatches: 338, Indels: 191
0.72 0.18 0.10
Matches are distributed among these distances:
157 16 0.01
158 304 0.22
159 658 0.48
160 34 0.02
161 3 0.00
162 4 0.00
163 4 0.00
164 1 0.00
165 5 0.00
166 3 0.00
167 2 0.00
170 8 0.01
171 202 0.15
172 1 0.00
173 2 0.00
174 6 0.00
175 6 0.00
176 1 0.00
179 1 0.00
180 6 0.00
181 6 0.00
182 3 0.00
183 1 0.00
184 91 0.07
185 3 0.00
188 5 0.00
189 6 0.00
191 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCTGAGTCGGACTGAGGGTTGCGGCAGCAGGATCGAC
AGCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGC
CCACACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:23499463 original size:317 final size:316
Alignment explanation
Indices: 23498724--23499570 Score: 1065
Period size: 317 Copynumber: 2.7 Consensus size: 316
23498714 TCATGTTTAA
* * * * * * * *
23498724 GCATACGGAGTTTATTTCCAATCTAAGATCAGACCGGACTGAGGGTTGCGGTAGTAGGATTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCTGATCGGACTGAGGGTTGCGGCAGCAGGATTGACA
* * * *
23498789 GCACATAGGGGGGACTGGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGGT
66 GCACGTAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGC-GT
* *
23498854 -CGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCG
130 CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * * * *
23498918 GATCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAAGGGACCGGGTCGATCCATGGCTTGCG
195 GATCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAAGGGACCGAGCCGATCCATGACTTGAG
* * *
23498983 TATTATGCCTCTCTGGCCAGCTCAGCGCCCACACACTCGTTTTGTGGGTTGACTTAG
260 CATTATGCCTCTCTGGCCAGCTCAGCACCCACACACTCGTTTCGTGGGTTGACTTAG
* * * * * *
23499040 GCATACGGAGTTCATTCCTAGTCTAAGATCTGATTGGA-TCGAAGATTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCTGATCGGACT-GAGGGTTGCGGCAGCAGGATTGAC
* * * *
23499104 AGCACGCAGGGGGGGCTCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCCGCTGAGCG
65 AGCACGTAGGGGGGAC-CGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCG
* * * *
23499169 TCCACACGCCCGTTTCGTGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
129 TCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* *
23499234 GGA-CTGAGGGTTGTGGCAGCGAGACCGACAGCATGCAGAGGGGGACCGAGCCGATCC-TCGACT
194 GGATC-GAGGGTTGTGGCAGCGAGACCGACAGCACGCAGA-AGGGACCGAGCCGATCCAT-GACT
* *
23499297 TGAGCATTATGCCTCTCTGGCCGGCTCAGCACCTACACACTCGTTTCGTGGGTTGACTTAG
256 TGAGCATTATGCCTCTCTGGCCAGCTCAGCACCCACACACTCGTTTCGTGGGTTGACTTAG
* * *
23499358 GCATATGGAGTTCATTCCCAGTCTAAGATTTGATCAGACTGAGGGTTGCGGCAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCTGATCGGACTGAGGGTTGCGGCAGCAGGATTGACA
* * * ** * * * * *
23499423 ACACGTAAGGGGGACCGAGTTGATCC-CTGGCTTACGCATTCTACCTCTTCAGTCGGTTGAGCGC
66 GCACGTAGGGGGGACCGGGCCGATCCTC-GGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGT
* * * * *
23499487 CCGCACGCTCATTTCATGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCA
130 CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
23499552 GATCGAGGGTTGTGGCAGC
195 GATCGAGGGTTGTGGCAGC
23499571 AGGACCAACA
Statistics
Matches: 449, Mismatches: 73, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
315 1 0.00
316 65 0.14
317 244 0.54
318 138 0.31
319 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (316 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCTGATCGGACTGAGGGTTGCGGCAGCAGGATTGACA
GCACGTAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGTC
CGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
ATCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAAGGGACCGAGCCGATCCATGACTTGAGC
ATTATGCCTCTCTGGCCAGCTCAGCACCCACACACTCGTTTCGTGGGTTGACTTAG
Found at i:23499521 original size:989 final size:989
Alignment explanation
Indices: 23497318--23501207 Score: 5087
Period size: 989 Copynumber: 3.9 Consensus size: 989
23497308 CGATCCTCAG
* * * *
23497318 CTTGCGCATTATGCCTCTCTGGCTGGCTCAACGCCCACACACTCGTTTCATGGGTTGACTTAGGC
1 CTTGCGCATTATGCCTCTCTGGCCGGCTCAGCACCCACACACTCATTTCATGGGTTGACTTAGGC
* * *
23497383 ATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGATCGAGGGTTATGACAGCAGGATCGACAGC
66 ATACGAAGTTCATTCCCAGTCTAAGATCTGACCGAATCGAGGGTTACGACAGCAGGATCGACAGC
* * * * * *
23497448 ACGTAGGGGGGGACCGGGTTGATCCCCGGCTTACGCATTTTGCCTCTTCGGCCAGCTGAGTGCCC
131 ACGCA-AGGGGGACCGGGTTGATCCCCGGCTTACGCATTCTGCCTCTCCGACCAGCTGAGCGCCC
* * * * *
23497513 GTACGCTCATTTCGTGTGTTGGCTTAGGAATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
195 GCACACTCATTTCATGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
* * * *
23497578 CCGAGGGTTGTGGCAGCAGGACCGACAGCGAGATCGACAGCATGCAGAGGGTGACCGAGCTGATC
260 CCGAGGGTTGTGGCAGCAGGACCAACAGCGAGATCGGCAGCACGCAGAGGGGGACCGAGCTGATC
* * * **
23497643 CTCAGCTTGTGCATTATGCCTTTTCGGCCGGCTGAGCGCCCGCATGCTTGTTTCATGGGTTGGCT
325 CCCGGCTTGCGCATTATGCCTTTTCGGCCGGCTGAGCGCCCGCATGCTCATTTCATGGGTTGGCT
* *
23497708 TAGGCACACGGAGTTCATTCCATGTTTAAGCATATGGAGTTCGTTCCCAGTCTAAGATCAGACCG
390 TAGGCACACGGAGTTCATTCCATGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
** * * *
23497773 GA-TCGAGGGTTACGACAGTAGGATTGGTAGCACGTA-GGGGGACCGGACTGATCCTCGGCTTAC
455 GACT-GAGGGTTACGACAGTAGGATTGACAGCACGTAGGGGGGACCGGGCCGATCCTCGACTTAC
* * * *
23497836 GCATTCTACCTCTCCAGCCGGCTGAGCGCCCGTACGCTCGTTTCATGCGTTGGCTTAGGCATAGG
519 GCATTCTACCTCTCCAGTCGGCTGAGCGCCCGTACGCCCATTTCATGGGTTGGCTTAGGCATAGG
* * *
23497901 GAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGAGACCGGCAGCACGCA
584 GAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCA
* * * * *
23497966 GAGGGGGACCGGGTCAATCTTCGGCTTGAGCATTATGCCTCTCTGGCCGGCTTAGCGTCCACACA
649 GAGGGGGACCGGGCCAATCCTCGGCTTGCGCATTATGCCTCTCTGGCCGGCTCAGCGCCCACACA
23498031 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGACCGAG
714 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGACCGAG
* * * * * *
23498096 GGTTACAACAGCAGGATCGACAGCATGTA-GGGGGAC-CGGGTTGATCCCCGGCTTACGCATTCT
779 GGTTGCAGCAGCAGGATCGACAGCATGCAGGGGGGGCTCGGGTCGATCCCCGGCTTGCGCATTCT
* *
23498159 GCCTCTTCGG-TCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGCCATAGGGAGTTC
844 GCCTCTTCGGCTCG-CTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGCCATAGGGAGTTC
* * * *
23498223 ATTCCATGTCTAAGCCCCAGTCAGACTGAGGGTTCTAGTAGCGAGACCGACAGCACGCAGAGGAG
908 ATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTATGGTAGCGAGACCGACAGCACGCAGAGGGG
*
23498288 GACTTGGTCGATCCCTAA
973 GAC-CGGTCGATCCCTAA
* *
23498306 CTTGCGCATTATGCCTCTCTGGCCGGTTCAGCATCCACACACTCATTTCATGGGTTGACTTAGGC
1 CTTGCGCATTATGCCTCTCTGGCCGGCTCAGCACCCACACACTCATTTCATGGGTTGACTTAGGC
* * *
23498371 ATACGAAGTTCATTCCCAGTCTAAGATCTGACCGAATCGAGGGTTGCGACAGCAGGATTGATAGC
66 ATACGAAGTTCATTCCCAGTCTAAGATCTGACCGAATCGAGGGTTACGACAGCAGGATCGACAGC
* * *
23498436 ACGCAGGGGGGACCGGGTTGATCCCCAGCTTACGTATTCTGCCTCTCCGACCAGCTGAGCGCCCG
131 ACGCAAGGGGGACCGGGTTGATCCCCGGCTTACGCATTCTGCCTCTCCGACCAGCTGAGCGCCCG
* * *
23498501 CACACTCATTTCATGTTTTGGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGAC
196 CACACTCATTTCATGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
* * * * *
23498566 TGAGGGTTGTGGCAGCTGGACCAACAGCGGGATCGGCAGCACGCAGAGGGGGATCGGGCTGATCC
261 CGAGGGTTGTGGCAGCAGGACCAACAGCGAGATCGGCAGCACGCAGAGGGGGACCGAGCTGATCC
* * * * * *
23498631 TCGGCTTGCGCATTACGCCTTTTTGGCCGGTTGAGCACCCGCATGCTCATTTCGTGGGTTGGCTT
326 CCGGCTTGCGCATTATGCCTTTTCGGCCGGCTGAGCGCCCGCATGCTCATTTCATGGGTTGGCTT
* * * * *
23498696 AGGCACAGGGAGTTCATTTCATGTTTAAGCATACGGAGTTTATTTCCAATCTAAGATCAGACCGG
391 AGGCACACGGAGTTCATTCCATGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* ** * * * * * *
23498761 ACTGAGGGTTGCGGTAGTAGGATTGATAGCACATAGGGGGGACTGGGCCGATCCTCGGCTTGCAC
456 ACTGAGGGTTACGACAGTAGGATTGACAGCACGTAGGGGGGACCGGGCCGATCCTCGACTTACGC
* * ** *
23498826 ATTCTGCCTCTCCGGTCGGCTGAGCGGTCGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGA
521 ATTCTACCTCTCCAGTCGGCTGAGCGCCCGTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGA
* * *
23498891 GTTCATTCCATGTCTAAGCCCTAGCCGGATCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGA
586 GTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGA
* * * * *
23498956 -AGGGACCGGGTCGATCCAT-GGCTTGCGTATTATGCCTCTCTGGCCAGCTCAGCGCCCACACAC
651 GGGGGACCGGGCCAATCC-TCGGCTTGCGCATTATGCCTCTCTGGCCGGCTCAGCGCCCACACAC
* * ** * *
23499019 TCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCTGATTGGATCGAAG
715 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGACCGAGG
* * * *
23499084 ATTGC-GACAGCAGGATCGACAGCACGCAGGGGGGGCTCGGGCCGATCCTCGGCTTGCGCATTCT
780 GTTGCAG-CAGCAGGATCGACAGCATGCAGGGGGGGCTCGGGTCGATCCCCGGCTTGCGCATTCT
* *
23499148 GCCTCTTCGGCCCGCTGAGCGTCCACACGCCCGTTTCGTGGGTTGGCTTAGCCATAGGGAGTTCA
844 GCCTCTTCGGCTCGCTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGCCATAGGGAGTTCA
* * *
23499213 TTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGAGACCGACAGCATGCAGAGGGGG
909 TTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTATGGTAGCGAGACCGACAGCACGCAGAGGGGG
* *
23499278 ACCGAGCCGAT-CCTCGA
974 ACCG-GTCGATCCCT-AA
* * * *
23499295 CTTGAGCATTATGCCTCTCTGGCCGGCTCAGCACCTACACACTCGTTTCGTGGGTTGACTTAGGC
1 CTTGCGCATTATGCCTCTCTGGCCGGCTCAGCACCCACACACTCATTTCATGGGTTGACTTAGGC
* * * * * * * * *
23499360 ATATGGAGTTCATTCCCAGTCTAAGATTTGATCAGACT-GAGGGTTGCGGCAGCAGGATTGACAA
66 ATACGAAGTTCATTCCCAGTCTAAGATCTGA-CCGAATCGAGGGTTACGACAGCAGGATCGACAG
* * * * * * * *
23499424 CACGTAAGGGGGACCGAGTTGATCCCTGGCTTACGCATTCTACCTCTTC-AGTCGGTTGAGCGCC
130 CACGCAAGGGGGACCGGGTTGATCCCCGGCTTACGCATTCTGCCTCTCCGA-CCAGCTGAGCGCC
* *
23499488 CGCACGCTCATTTCATGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
194 CGCACACTCATTTCATGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * * *
23499553 ATCGAGGGTTGTGGCAGCAGGACCAACAGCGAGATCGGCAGCACGCAAAAGGGGACCGGGCTGAT
259 ACCGAGGGTTGTGGCAGCAGGACCAACAGCGAGATCGGCAGCACGCAGAGGGGGACCGAGCTGAT
* * *
23499618 CCCCGGCTTGCGCATTATGCCTTTTCGGCCAGCTGAGCGCCCGCATGCTCATTTCGTGGTTTGGC
324 CCCCGGCTTGCGCATTATGCCTTTTCGGCCGGCTGAGCGCCCGCATGCTCATTTCATGGGTTGGC
**
23499683 TTAGGCACACGGAGTTCATTCCATGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
389 TTAGGCACACGGAGTTCATTCCATGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
** * * * * * * *
23499748 AAACCGAGGGTTACGACAGTAGGATCGACAGCATGTAAGAGGGACCAGGCCGATCCTCGACTTGC
454 GGACTGAGGGTTACGACAGTAGGATTGACAGCACGTAGGGGGGACCGGGCCGATCCTCGACTTAC
* *
23499813 GCATTCTACCTCTCCAGTCGGCTGAGCGCTCGTACGCCCATTTCATGGGTTGGCTTAGGCGTAGG
519 GCATTCTACCTCTCCAGTCGGCTGAGCGCCCGTACGCCCATTTCATGGGTTGGCTTAGGCATAGG
** *
23499878 GAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATTGGCAGCACGCA
584 GAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCA
** * * ** *
23499943 GAGGGGGATTGGGCCGATCCTCGGCTTGCGCATTATGTCTCTCTGGTTGGCTCAGTGCCCACACA
649 GAGGGGGACCGGGCCAATCCTCGGCTTGCGCATTATGCCTCTCTGGCCGGCTCAGCGCCCACACA
* * *
23500008 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAGATCTGATCGGACCGAG
714 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGACCGAG
* * * * ** * * *
23500073 GGCTGCAGCAGCATGATTGACAGCATGCAGTGGGGGAGCAGGTCGATCCCCGGATTGCACATTCT
779 GGTTGCAGCAGCAGGATCGACAGCATGCAGGGGGGGCTCGGGTCGATCCCCGGCTTGCGCATTCT
* ** * *
23500138 GCCTCTTCGACAGGCTGAGCGCCCACACACCCGTTTCGTGGGTTGGATTAGCCATAGGGAGTTCA
844 GCCTCTTCGGCTCGCTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGCCATAGGGAGTTCA
** * *
23500203 TTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTATGGTAATGAGACTGACAGTACGCAGAGGGGG
909 TTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTATGGTAGCGAGACCGACAGCACGCAGAGGGGG
23500268 ACCGGGTCGATCCCTAA
974 ACC-GGTCGATCCCTAA
* ** *
23500285 CTTGCGCATTATGCCTCTCTGGCCGGCTTAGTGCCCGCACACTCATTTCATGGGTTGACTTAGGC
1 CTTGCGCATTATGCCTCTCTGGCCGGCTCAGCACCCACACACTCATTTCATGGGTTGACTTAGGC
* *
23500350 ATACGAAGTTCATTCCCAGTCTAAGATCTAACCGAATCGAGGGTTACGGCAGCAGGATCGACAGC
66 ATACGAAGTTCATTCCCAGTCTAAGATCTGACCGAATCGAGGGTTACGACAGCAGGATCGACAGC
* * * * *
23500415 ATGCAAGAGGGGATCGGGTTGATCCCCGACTTACGCATTCTGTCTCTCCGACCGGCTGAGCGCCC
131 ACGCAAG-GGGGACCGGGTTGATCCCCGGCTTACGCATTCTGCCTCTCCGACCAGCTGAGCGCCC
* *
23500480 GCACACTCATTTCGTGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
195 GCACACTCATTTCATGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
* * * * * * * *
23500545 CCAAGGTTTATGGTAGCAGGACCGACAGCGGGATCAGTAGCACGCAGAGGGGGACCGAGCTGATC
260 CCGAGGGTTGTGGCAGCAGGACCAACAGCGAGATCGGCAGCACGCAGAGGGGGACCGAGCTGATC
* * * * * *
23500610 CCCGACTTGCACATTATGCC-TTTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCATGCGTTGGC
325 CCCGGCTTGCGCATTATGCCTTTTC-GGCCGGCTGAGCGCCCGCATGCTCATTTCATGGGTTGGC
* * * *
23500674 TTAGGCACACAGAGTTCATTCCATGTTTAAGCTTACGAAGTTCATTCCCAGTCTAAGATCGGACC
389 TTAGGCACACGGAGTTCATTCCATGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* *
23500739 GGACTGAGGGTTACGATAGTAGGATT-AGCAGCACGTAGGGGGGACCGAGCCGATCCTCGACTTA
454 GGACTGAGGGTTACGACAGTAGGATTGA-CAGCACGTAGGGGGGACCGGGCCGATCCTCGACTTA
* * * * * * *
23500803 CGCATTCTGCCTCTCCGGTTGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAG
518 CGCATTCTACCTCTCCAGTCGGCTGAGCGCCCGTACGCCCATTTCATGGGTTGGCTTAGGCATAG
* *
23500868 GGATTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGACCGACAGCACGC
583 GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGC
* * * * * * * * *
23500933 AGAGGGCGATCGGGCCAATCCTCGACTTACGCAATATGCCTCT-TCGACTGGCTCAGGGCCCGCA
648 AGAGGGGGACCGGGCCAATCCTCGGCTTGCGCATTATGCCTCTCT-GGCCGGCTCAGCGCCCACA
* * *
23500997 CGCTCGTTTCGTGGGTTGACTTATGCAAACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGA-C
712 CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTG-ACCGGACC
* * * *
23501060 TACGGGTAGCAGCAGCAGGATCGACAGCATGCAGGGGGGGACT-GGGTTGATCCCCGACTTGCGC
776 GA-GGGTTGCAGCAGCAGGATCGACAGCATGCAGGGGGGG-CTCGGGTCGATCCCCGGCTTGCGC
* * * ** * * * * * *
23501124 GTTCTGCCTCTCCGGCTGGCTGAGCGCCCGTACGCTCATTTCGTAGGTTCGCTTAGGCATATGGA
839 ATTCTGCCTCTTCGGCTCGCTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGCCATAGGGA
23501189 GTTCATTCCATGTCTAAGC
904 GTTCATTCCATGTCTAAGC
23501208 ATACGAAGTT
Statistics
Matches: 2516, Mismatches: 361, Indels: 47
0.86 0.12 0.02
Matches are distributed among these distances:
987 443 0.18
988 274 0.11
989 720 0.29
990 412 0.16
991 666 0.26
992 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (989 bp):
CTTGCGCATTATGCCTCTCTGGCCGGCTCAGCACCCACACACTCATTTCATGGGTTGACTTAGGC
ATACGAAGTTCATTCCCAGTCTAAGATCTGACCGAATCGAGGGTTACGACAGCAGGATCGACAGC
ACGCAAGGGGGACCGGGTTGATCCCCGGCTTACGCATTCTGCCTCTCCGACCAGCTGAGCGCCCG
CACACTCATTTCATGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
CGAGGGTTGTGGCAGCAGGACCAACAGCGAGATCGGCAGCACGCAGAGGGGGACCGAGCTGATCC
CCGGCTTGCGCATTATGCCTTTTCGGCCGGCTGAGCGCCCGCATGCTCATTTCATGGGTTGGCTT
AGGCACACGGAGTTCATTCCATGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
ACTGAGGGTTACGACAGTAGGATTGACAGCACGTAGGGGGGACCGGGCCGATCCTCGACTTACGC
ATTCTACCTCTCCAGTCGGCTGAGCGCCCGTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGA
GTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGA
GGGGGACCGGGCCAATCCTCGGCTTGCGCATTATGCCTCTCTGGCCGGCTCAGCGCCCACACACT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGACCGAGGG
TTGCAGCAGCAGGATCGACAGCATGCAGGGGGGGCTCGGGTCGATCCCCGGCTTGCGCATTCTGC
CTCTTCGGCTCGCTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGCCATAGGGAGTTCATT
CCATGTCTAAGCCCCAGTCGGACTGAGGGTTATGGTAGCGAGACCGACAGCACGCAGAGGGGGAC
CGGTCGATCCCTAA
Found at i:23500291 original size:318 final size:318
Alignment explanation
Indices: 23499713--23501207 Score: 1015
Period size: 318 Copynumber: 4.6 Consensus size: 318
23499703 CCATGTTTAA
* * * * * *
23499713 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGGACCAAACCGAGGGTTAC-GACAGTAGGATCGA
1 GCATACGAAGTTCATTCACAGTCTAAGATCT-AACCGAACCGAGGGCTACAG-CAGCAGGATCGA
* * * * * * * *
23499776 CAGCATGTAAGA-GGGACCAGGCCGATCCTCGACTTGCGCATTCTACCTCTCCAGTC-GGCTGAG
64 CAGCATGCAAGAGGGGAGCAGGTCGATCCCCGACTTACACATTCTGCCTCTCC-GACAGGCTGAG
* ** * * *
23499839 CGCTCGTACGCCCATTTCATGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAG
128 CGCCCACACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* * * * * * * ** **
23499904 CCGGACCGAGGGTTGTGGCAGCGGGATTGGCAGCACGCAGAGGGGGATTGGGCCGATCCTCGGCT
193 TCGGACCGAGGGTTATGGTAACGAGACTGACAGCACGCAGAGGGGGACCGGGCCGATCCTCAACT
* ** *
23499969 TGCGCATTATGTCTCTCTGGTTGGCTCAGTGCCCACACACTCGTTTCATGGGTTGACTTAG
258 TGCGCATTATGCCTCTCTGGCCGGCTCAGTGCCCACACACTCATTTCATGGGTTGACTTAG
* * * * * * *
23500030 GCATACGGAGTTCATTCACAGTCTAAGATCTGATCGGACCGAGGGCTGCAGCAGCATGATTGACA
1 GCATACGAAGTTCATTCACAGTCTAAGATCTAACCGAACCGAGGGCTACAGCAGCAGGATCGACA
* * *
23500095 GCATGC-AGTGGGGGAGCAGGTCGATCCCCGGA-TTGCACATTCTGCCTCTTCGACAGGCTGAGC
66 GCATGCAAG-AGGGGAGCAGGTCGATCCCC-GACTTACACATTCTGCCTCTCCGACAGGCTGAGC
* * *
23500158 GCCCACACACCCGTTTCGTGGGTTGGATTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
129 GCCCACACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
* * * *
23500223 CGGACTGAGGGTTATGGTAATGAGACTGACAGTACGCAGAGGGGGACCGGGTCGATCC-CTAACT
194 CGGACCGAGGGTTATGGTAACGAGACTGACAGCACGCAGAGGGGGACCGGGCCGATCCTC-AACT
* *
23500287 TGCGCATTATGCCTCTCTGGCCGGCTTAGTGCCCGCACACTCATTTCATGGGTTGACTTAG
258 TGCGCATTATGCCTCTCTGGCCGGCTCAGTGCCCACACACTCATTTCATGGGTTGACTTAG
* * * *
23500348 GCATACGAAGTTCATTCCCAGTCTAAGATCTAACCGAATCGAGGGTTACGGCAGCAGGATCGACA
1 GCATACGAAGTTCATTCACAGTCTAAGATCTAACCGAACCGAGGGCTACAGCAGCAGGATCGACA
* * * * * *
23500413 GCATGCAAGAGGGGATCGGGTTGATCCCCGACTTACGCATTCTGTCTCTCCGACCGGCTGAGCGC
66 GCATGCAAGAGGGGAGCAGGTCGATCCCCGACTTACACATTCTGCCTCTCCGACAGGCTGAGCGC
* * * *
23500478 CCGCACACTCATTTCGTGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCG
131 CCACACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
* * * * * *
23500543 GACCAAGGTTTATGGTAGCAGGACCGACAGCGGGATCAGTAGCACGCAGAGGGGGACCGAGCTGA
196 GACCGAGGGTTATGGT---A--A-CGAGA-C-TGA-C---AGCACGCAGAGGGGGACCGGGCCGA
* * * * * * * * * * * *
23500608 TCCCCGACTTGCACATTATGCCTTTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCATGCGTTGG
249 TCCTCAACTTGCGCATTATGCCTCTCTGGCCGGCTCAGTGCCCACACACTCATTTCATGGGTTGA
23500673 CTTAG
314 CTTAG
* * * * * * * *
23500678 GCACAC-AGAGTTCATTC-CATGTTTAAGCTTACGAAGTTC-ATTCCCA-GTCTA-AGATCGGAC
1 GCATACGA-AGTTCATTCACA-GTCTAAG-AT-CTAA--CCGA-ACCGAGGGCTACAG--C--A-
* * * * * * *
23500738 CGGACTGAGGGTTACGATAGTAGGATTAGCAGCACGTAGGGGGGACCGAGCCGATCCTCGACTTA
54 --G-C--A-GGAT-CG--A-CAGCA-T-GCA--A-G-AGGGGAG-CAG-GTCGATCCCCGACTTA
* *** * ** * * *
23500803 CGCATTCTGCCTCTCCGGTTGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAG
101 CACATTCTGCCTCTCCGACAGGCTGAGCGCCCACACACCCATTTCGTGGGTTGGCTTAGGCATAG
* * * * * * * *
23500868 GGATTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGACCGACAGCACGC
166 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTATGGTAACGAGACTGACAGCACGC
* * * * * * * * * *
23500933 AGAGGGCGATCGGGCCAATCCTCGACTTACGCAATATGCCTCT-TCGACTGGCTCAGGGCCCGCA
231 AGAGGGGGACCGGGCCGATCCTCAACTTGCGCATTATGCCTCTCT-GGCCGGCTCAGTGCCCACA
* * * *
23500997 CGCTCGTTTCGTGGGTTGACTTAT
295 CACTCATTTCATGGGTTGACTTAG
* * * * * *
23501021 GCAAACGGAGTTCATTCCCAGTCTAAGATCGAACCGGA-CTACGGG-TAGCAGCAGCAGGATCGA
1 GCATACGAAGTTCATTCACAGTCTAAGATCTAACCGAACCGA-GGGCTA-CAGCAGCAGGATCGA
* * * * * * * * *
23501084 CAGCATGCAGGGGGGGA-CTGGGTTGATCCCCGACTTGCGCGTTCTGCCTCTCCGGCTGGCTGAG
64 CAGCATGCAAGAGGGGAGC-AGGTCGATCCCCGACTTACACATTCTGCCTCTCCGACAGGCTGAG
** * * * * *
23501148 CGCCCGTACGCTCATTTCGTAGGTTCGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
128 CGCCCACACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
23501208 ATACGAAGTT
Statistics
Matches: 934, Mismatches: 183, Indels: 121
0.75 0.15 0.10
Matches are distributed among these distances:
316 2 0.00
317 62 0.07
318 466 0.50
319 5 0.01
320 4 0.00
321 2 0.00
323 1 0.00
324 6 0.01
325 2 0.00
326 5 0.01
327 2 0.00
329 5 0.01
330 102 0.11
331 3 0.00
332 4 0.00
333 5 0.01
334 5 0.01
336 1 0.00
337 1 0.00
338 2 0.00
339 5 0.01
340 2 0.00
341 6 0.01
342 3 0.00
343 97 0.10
344 4 0.00
346 2 0.00
347 5 0.01
348 2 0.00
349 6 0.01
351 1 0.00
352 2 0.00
353 5 0.01
354 2 0.00
355 107 0.11
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (318 bp):
GCATACGAAGTTCATTCACAGTCTAAGATCTAACCGAACCGAGGGCTACAGCAGCAGGATCGACA
GCATGCAAGAGGGGAGCAGGTCGATCCCCGACTTACACATTCTGCCTCTCCGACAGGCTGAGCGC
CCACACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
GACCGAGGGTTATGGTAACGAGACTGACAGCACGCAGAGGGGGACCGGGCCGATCCTCAACTTGC
GCATTATGCCTCTCTGGCCGGCTCAGTGCCCACACACTCATTTCATGGGTTGACTTAG
Found at i:23501002 original size:159 final size:159
Alignment explanation
Indices: 23500791--23501207 Score: 453
Period size: 159 Copynumber: 2.6 Consensus size: 159
23500781 GACCGAGCCG
* *
23500791 ATCCTCGACTTACGCATTCTGCCTCTCCGGTTGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTG
1 ATCCTCGACTTACGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTG
* * * * ** *
23500856 GCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCCAGCCGGATCGA-GGGTTGTGGCAGCGGG
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGA-CGACGGGTAGCAGCAGCAGG
23500920 ACCGACAGCACGCAGAGGGCGA-TCGGGCCA
130 ACCGACAGCACGCAGAGGGCGACT-GGGCCA
* * * * * * *
23500950 ATCCTCGACTTACGCAATATGCCTCTTCGACTGGCTCAGGGCCCGCACGCTCGTTTCGTGGGTTG
1 ATCCTCGACTTACGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTG
* * * ** * *
23501015 ACTTATGCAAACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGACTACGGGTAGCAGCAGCAGG
66 GCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACGACGGGTAGCAGCAGCAGG
* * * * ***
23501079 ATCGACAGCATGCAGGGGGGGACTGGGTTG
130 ACCGACAGCACGCAGAGGGCGACTGGGCCA
* * * * * *
23501109 ATCCCCGACTTGCGCGTTCTGCCTCTCCGGCTGGCTGAGCGCCCGTACGCTCATTTCGTAGGTTC
1 ATCCTCGACTTACGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTG
*
23501174 GCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
23501208 ATACGAAGTT
Statistics
Matches: 206, Mismatches: 48, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
158 5 0.02
159 197 0.96
160 4 0.02
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (159 bp):
ATCCTCGACTTACGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACGACGGGTAGCAGCAGCAGGA
CCGACAGCACGCAGAGGGCGACTGGGCCA
Found at i:23501951 original size:26 final size:26
Alignment explanation
Indices: 23501911--23501963 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23501901 GTTGACTTAG
*
23501911 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGATCATCCCCAGTCTAA
* *
23501937 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACAGAGATCATCCCCAGTCTAA
23501963 G
1 G
23501964 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGATCATCCCCAGTCTAA
Found at i:23502237 original size:159 final size:159
Alignment explanation
Indices: 23502074--23502439 Score: 393
Period size: 158 Copynumber: 2.3 Consensus size: 159
23502064 CTTGCATGCC
* * *
23502074 CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGGAT-GAAG
1 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGATCG-AG
* * * * * *
23502137 GGTTGCGATAGCGGGACT-GGCAGCACGCAGAGGGGGA-CTAGGCTGATCCCCAGCTTGTGCATT
65 GGTTGCGATAACAGGACTCGACAGCACG--GAGGGGCATCGAGGC-GATCCCCAGCTTGCGCATT
* *
23502200 ATGCCTCTCCGGCCGGCTCAGTGCCCACACGCT
127 ATGCCTCTCCGGCCGGCTCAGCGCCCACACGCG
* *
23502233 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGATCGAG
1 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGATCGAG
* * * * * * *
23502296 GGTTGCGATAATAGGATTCGACAGCACGTAGGGGCATCGAGTCGATCCCCCGTTTGCGCATTCTG
65 GGTTGCGATAACAGGACTCGACAGCACGGAGGGGCATCGAGGCGATCCCCAGCTTGCGCATTATG
* * * * * *
23502361 CCTCTTCGGTCGGTTGAGCGCTCGCACGCG
130 CCTCTCCGGCCGGCTCAGCGCCCACACGCG
* *
23502391 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATACCATGTCTAAGCA
1 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
23502440 TACGGAGTTC
Statistics
Matches: 171, Mismatches: 29, Indels: 14
0.80 0.14 0.07
Matches are distributed among these distances:
157 3 0.02
158 88 0.51
159 68 0.40
160 12 0.07
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGATCGAGG
GTTGCGATAACAGGACTCGACAGCACGGAGGGGCATCGAGGCGATCCCCAGCTTGCGCATTATGC
CTCTCCGGCCGGCTCAGCGCCCACACGCG
Found at i:23502410 original size:158 final size:157
Alignment explanation
Indices: 23501937--23502425 Score: 477
Period size: 159 Copynumber: 3.1 Consensus size: 157
23501927 CCCAGTCTAA
* * * **
23501937 GCATACGGAGATCATTCCCAGTCTAAGATCAGATCGGA-CTGAGGGTTGTGGCAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGATAGCAGGATCGGC
* * ** * * *
23502001 AGCATGCAGGGGGATCGGGCCGATCCCTGGCTTGTGCATTCTGCCTATCCAGTCGGCTGAGCACT
65 AGCACGCAGGGGGATCGAGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCT
* *
23502066 TGCATGCCCATTTCATGGGTTGGCTTAG
130 CGCACGCCCATTTCATGGGTTGGCTTAG
* ** *
23502094 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGAT-GAAGGGTTGCGATAGCGGGA-CT
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCG-AGGGTTGCGATAGCAGGATC-
* * * * *
23502155 GGCAGCACGCAGAGGGGGA-CTAGGCTGATCCCCAGCTTGTGCATTATGCCTCTCCGGCCGGCTC
62 GGCAGCACGC--AGGGGGATCGA-GCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTCGGCTG
* * * * *
23502219 AGTGCCCACACGCTCATTTCATGGGTTGACTTAG
124 AGCGCTCGCACGCCCATTTCATGGGTTGGCTTAG
* ** *
23502253 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGATAATAGGATTCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGATAGCAGGA-TCGGC
* * * * * * * *
23502318 AGCACGTAGGGGCATCGAGTCGATCCCCCGTTTGCGCATTCTGCCTCTTCGGTCGGTTGAGCGCT
65 AGCACGCAGGGGGATCGAGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCT
* *
23502383 CGCACGCGCGTTTCATGGGTTGGCTTAG
130 CGCACGCCCATTTCATGGGTTGGCTTAG
23502411 GCATACGGAGTTCAT
1 GCATACGGAGTTCAT
23502426 ACCATGTCTA
Statistics
Matches: 263, Mismatches: 55, Indels: 27
0.76 0.16 0.08
Matches are distributed among these distances:
156 5 0.02
157 49 0.19
158 85 0.32
159 111 0.42
160 12 0.05
161 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGATAGCAGGATCGGCA
GCACGCAGGGGGATCGAGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCTC
GCACGCCCATTTCATGGGTTGGCTTAG
Found at i:23502820 original size:26 final size:26
Alignment explanation
Indices: 23502790--23502842 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23502780 GTTGACTTAG
23502790 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23502816 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23502842 G
1 G
23502843 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23504571 original size:26 final size:26
Alignment explanation
Indices: 23504541--23504593 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23504531 GTTGACTTAG
23504541 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23504567 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23504593 G
1 G
23504594 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23505046 original size:158 final size:158
Alignment explanation
Indices: 23504645--23505046 Score: 471
Period size: 158 Copynumber: 2.6 Consensus size: 158
23504635 GAGCCGATCG
* * * *
23504645 GCTTACGCATTCTGCCTCTCCGGCCAGCTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTT--C
1 GCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGC
* * * * **
23504708 GTAGGGAGTTCATTCCATGTCTAATCCCCAGCCAGACCAAGGGTTGTGGCAGCGGGACTAGTAGC
66 ATACGGAGTTCATTCCATGTCTAATCCCCAGCCAGACCAAGGGTTGCGGCAGCAGGACTAACAGC
*
23504773 ACGCAGAGGGGGACCGGGCTGATCCCCT
131 ACGCAGAGGGGGACCGGGCTGATCCCCA
* * * * *
23504801 GCTTGCGCATTATGCCTCTTCGATCAGCTCAGCG-CCGCACGCTCGTTTCGTGGGTTGACTTATG
1 GCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA-G
** * *
23504865 CATACGGAGTTCATTCCCA-GTCTATGAT-CGGA-CCATACCGAGGGTTGCGGCAGCAGGA-TCA
65 CATACGGAGTTCATT-CCATGTCTA--ATCCCCAGCCAGACCAAGGGTTGCGGCAGCAGGACT-A
23504926 ACAGCACGCAG-GGGGGACCGGG-TCGATCCCCA
126 ACAGCACGCAGAGGGGGACCGGGCT-GATCCCCA
* * *
23504958 GCTTGCGCATTCTTCCTCTCCGACCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA-G
23505023 CATACGGAGTTCATTCCATGTCTA
65 CATACGGAGTTCATTCCATGTCTA
23505047 CGCATACGGA
Statistics
Matches: 207, Mismatches: 29, Indels: 18
0.81 0.11 0.07
Matches are distributed among these distances:
155 25 0.12
156 28 0.14
157 50 0.24
158 97 0.47
159 5 0.02
160 2 0.01
ACGTcount: A:0.16, C:0.30, G:0.30, T:0.24
Consensus pattern (158 bp):
GCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGC
ATACGGAGTTCATTCCATGTCTAATCCCCAGCCAGACCAAGGGTTGCGGCAGCAGGACTAACAGC
ACGCAGAGGGGGACCGGGCTGATCCCCA
Found at i:23511927 original size:158 final size:158
Alignment explanation
Indices: 23511597--23512166 Score: 603
Period size: 158 Copynumber: 3.6 Consensus size: 158
23511587 CACCCGTTCG
* * * * * *
23511597 ATCCTCGGCTTGCGCATCCTGCCTCTCTGGTCGG-TGAGCGTCCGCACGCTCATTTCATGGGTTA
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTG
* ** * * *
23511661 ACTTAGGCATACGGAGTTCATTCCCA-ATCTAAGATTGGACCAGACCGAGGGTTGCGGCAACAGG
66 ACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGG
*
23511725 ATCGACAGCACACAGGGGGGACCGGGCCA
130 ATCGACAGCACGCAGGGGGGACCGGGCCA
* * * * *
23511754 ATCCCTGACTGGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTG
* * ** * * *
23511819 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGCAGCGGG
66 ACTTAGGCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGG
** * * **
23511883 A-CGGTAGCATGCAGAGGTGGACCGGGCTG
130 ATCGACAGCACGCAG-GGGGGACCGGGCCA
* * * * * * *
23511912 ATCCCCGGCTTGCGCATTATGCCTCTCTGATTGACTCAGCGCCCGCATGCTCGTTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTG
* *
23511977 ACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCAGACCGGACCAAGGGTTGTGGTAGCAGG
66 ACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGG
* *
23512041 ATCGACAGCACGTAGGGGGGACCGAGCCA
130 ATCGACAGCACGCAGGGGGGACCGGGCCA
* * * * ** **
23512070 ATCCCTGGCTTGCACATTCTGCCTCTCCGA-CAGCTGAGCACCCGCGTGCTTGTTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTG
*
23512134 GCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 ACTTAGGCATACGGAGTTCATTCCATGTCTAAG
23512167 CATATGGAGT
Statistics
Matches: 333, Mismatches: 72, Indels: 16
0.79 0.17 0.04
Matches are distributed among these distances:
157 100 0.30
158 223 0.67
159 10 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTG
ACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGA
TCGACAGCACGCAGGGGGGACCGGGCCA
Found at i:23512191 original size:26 final size:26
Alignment explanation
Indices: 23512140--23512191 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23512130 GTTGGCTTAG
*
23512140 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGGCTAA
*
23512166 GCATATGGAGTTCATT-CATAGGCTAA
1 GCATACGGAGTTCATTCCAT-GGCTAA
23512192 TATTGGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGGCTAA
Found at i:23512831 original size:158 final size:159
Alignment explanation
Indices: 23512566--23512904 Score: 416
Period size: 158 Copynumber: 2.1 Consensus size: 159
23512556 GATCGGACCA
** * * ***
23512566 ACCGAGGGTTACGGTAGCAGGATCGACAGCACGCATGGGGGACCAGGCCGATCCCCGACTTGTGC
1 ACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCATGGGGGACCAGGCCGATCCCCGACTTACAC
* * * ** *
23512631 ATTCTGCCTCTCCGACCGGCTGAGCATCCGCACGCCTGTTTCATGGGTTGGCTTCGACATAGGGA
66 ATTCTACCTCTCCGACCGGATGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGACATAGGGA
*
23512696 GTTCATTCCATGTCTAAG-CCCCAGCTAG
131 GTTCATTCCATGTCTAAGCCCCCAGCCAG
* * * * *
23512724 ATCGATGGTTGTGGCAGCGGGATCGACAGCACGTA-GGGGGAACC-GAGCCGATCCCTGGCTTAC
1 ACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCATGGGGG-ACCAG-GCCGATCCCCGACTTAC
* *
23512787 ACATTCTACCTCTCCGACCGGATGAGCGCCCGTC-CGCCCATTTCATGGGTTGGCTTAGGCATAG
64 ACATTCTACCTCTCCGACCGGATGAGCACCCG-CACGCCCATTTCATGGGTTGGCTTAGACATAG
*
23512851 GGAGTTCATTCCATGTCTAAGCCCCCAGCCGG
128 GGAGTTCATTCCATGTCTAAGCCCCCAGCCAG
*
23512883 ACCGAGGGTTGTGGTAGCGGGA
1 ACCGAGGGTTGTGGCAGCGGGA
23512905 CCGGTAGCAC
Statistics
Matches: 152, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
157 6 0.04
158 118 0.78
159 28 0.18
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (159 bp):
ACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCATGGGGGACCAGGCCGATCCCCGACTTACAC
ATTCTACCTCTCCGACCGGATGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGACATAGGGA
GTTCATTCCATGTCTAAGCCCCCAGCCAG
Found at i:23513206 original size:26 final size:26
Alignment explanation
Indices: 23513171--23513223 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23513161 GTTGGCATAG
23513171 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
23513197 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23513223 G
1 G
23513224 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23513944 original size:26 final size:26
Alignment explanation
Indices: 23513892--23513944 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23513882 GTTGACTTAG
* * *
23513892 GCATACGGTGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
23513918 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
23513944 G
1 G
23513945 ATCACACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:23514407 original size:26 final size:26
Alignment explanation
Indices: 23514376--23514428 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23514366 GTTAGCTTAG
*
23514376 GCATACGGATTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23514402 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23514428 G
1 G
23514429 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23515130 original size:159 final size:158
Alignment explanation
Indices: 23514908--23515202 Score: 351
Period size: 159 Copynumber: 1.9 Consensus size: 158
23514898 CTGCACGCCA
* * * * * * *
23514908 GTTTCGTGGGTTGCCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGT
1 GTTTCATGCGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACCAGACCGAGGGT
* * * * *
23514973 TGTGGCAGCGGGACCGACAGCAGGTAGAGAGGGATC-AGGCTGATCCTCGGCTTAAGCATTATGC
66 TGCGGCAGCAGGACCGACAGCACGCAG-GAGGGATCGAGGC-GATCCCCGGCTTAAGCATTATGC
23515037 CTCTCCGGCAGGCTCAATGCCAGCACACTC
129 CTCTCCGGCAGGCTCAATGCCAGCACACTC
* * **
23515067 GTTTCATGCGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGAACTGGACCGAGGG
1 GTTTCATGCGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCCAACCAGACCGAGGG
* * * * * *
23515131 TTGCGGCAGCAGGATCGATAGCACGCAGGGGGGATCGAGTCGATCCCCGGCTTATGCATTCTGCC
65 TTGCGGCAGCAGGACCGACAGCACGCAGGAGGGATCGAGGCGATCCCCGGCTTAAGCATTATGCC
23515196 TCTCCGG
130 TCTCCGG
23515203 ATGCCCGTTT
Statistics
Matches: 112, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
158 35 0.31
159 74 0.66
160 3 0.03
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (158 bp):
GTTTCATGCGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACCAGACCGAGGGT
TGCGGCAGCAGGACCGACAGCACGCAGGAGGGATCGAGGCGATCCCCGGCTTAAGCATTATGCCT
CTCCGGCAGGCTCAATGCCAGCACACTC
Found at i:23515457 original size:301 final size:301
Alignment explanation
Indices: 23514908--23515501 Score: 714
Period size: 301 Copynumber: 2.0 Consensus size: 301
23514898 CTGCACGCCA
*
23514908 GTTTCGTGGGTTGCCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGT
1 GTTTCATGGGTTGCCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGT
* * *** *
23514973 TGTGGCAGCGGGACCGACAGCAGGTAGAGAGGGATCAGGCTGATCCTCGGCTTAAGCATTATGCC
66 TATGGCAGCGGGACCGACACCACACAGAGAGGGACCAGGCTGATCCTCGGCTTAAGCATTATGCC
* * *
23515038 TCTCCGGCAGGCTCAATGCCAGCACACTCGTTTCATGCGTTGACTTAGGCATACGGAGTTCATTC
131 TCTCCGGCAGGCTCAACGCCAGCACACTCGTTTCATGCGTTGACTTACGCATACGAAGTTCATTC
* * * * * * * *
23515103 CCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGGATCG
196 CCAATCTAAGATAGAACCGGACCCAGGGATGCGGCAGCAGGATCGACAGCACGCAAGGGGGACCG
* * * *
23515168 AGTCGATCCCCGGCTTATGCATTCTGCCTCTCCGGATGCCC
261 AGCCGATCCCCAGCTTACGCATTCTACCTCTCCGGATGCCC
* * ***
23515209 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTTGGA-TCGAGGG
1 GTTTCATGGGTTGCCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACT-GAGGG
* * ** *
23515273 TTATGGTAGCGGGACCGACACCACACAGAGGGGGACC-GAGCTGATCC-CTGGCTTGCGTATTAT
65 TTATGGCAGCGGGACCGACACCACACAGAGAGGGACCAG-GCTGATCCTC-GGCTTAAGCATTAT
* * * * * ** *
23515336 GCCTTTTCGGTCA-GCTTAGCGCTC-GCACGCTCGTTTTGTGGGTTGACTTACGCATACGAAGTT
128 GCCTCTCCGG-CAGGCTCAACGC-CAGCACACTCGTTTCATGCGTTGACTTACGCATACGAAGTT
*
23515399 CATTCCCAATCTAAGAATAG-ACCGGACCCAGGGATGTGGCAGCAGGATCGACAGCACGCAAGGG
191 CATTCCCAATCTAAG-ATAGAACCGGACCCAGGGATGCGGCAGCAGGATCGACAGCACGCAAGGG
*
23515463 GGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCC
255 GGACCGAGCCGATCCCCAGCTTACGCATTCTACCTCTCC
23515502 AGCCGGCTGA
Statistics
Matches: 245, Mismatches: 42, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
300 3 0.01
301 236 0.96
302 6 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (301 bp):
GTTTCATGGGTTGCCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGT
TATGGCAGCGGGACCGACACCACACAGAGAGGGACCAGGCTGATCCTCGGCTTAAGCATTATGCC
TCTCCGGCAGGCTCAACGCCAGCACACTCGTTTCATGCGTTGACTTACGCATACGAAGTTCATTC
CCAATCTAAGATAGAACCGGACCCAGGGATGCGGCAGCAGGATCGACAGCACGCAAGGGGGACCG
AGCCGATCCCCAGCTTACGCATTCTACCTCTCCGGATGCCC
Found at i:23515936 original size:26 final size:26
Alignment explanation
Indices: 23515900--23515950 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
23515890 GTTGACCTAG
*
23515900 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
23515926 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAATCTA
23515951 GGATCAGATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:23516236 original size:343 final size:344
Alignment explanation
Indices: 23515420--23516269 Score: 874
Period size: 343 Copynumber: 2.4 Consensus size: 344
23515410 TAAGAATAGA
* * * * * *
23515420 CCGGACCCAGGGATGTGGCAGCAGGATCGACAGCACGC-AAGGGGGACCGAGCCGATCCCCAGCT
1 CCGGACCGAGGGTTCTGGCAACGGGATCGACAGCACGCAAAGGGGGACCGAGCCAATCCCCAGCT
* * * * * *
23515484 TGCGCATTCTACCTCTCCAGCCGGCTGAGAGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCAT
66 TGCGCATTATGCCTCTTCAGCCGACTGA-AGCCCGCATGCTCGTTTCTTGGGTTGACTTAGGCAT
* *
23515549 ACGGAGTTCAAT-CCATGTCTAAGCATATAGAATTCATTCCCAGTCTAAGATCGGTCTGGACCGA
130 ACGGAGTTC-ATCCCA-GTCTAAGCATACAGAATTCATTCCCAGTCTAAGATCGATCTGGACCGA
** * * * *
23515613 GGGTTGCGACAGCAGGACAAGCAGCAGGATTTACAGCACGTAGGGGGGATCGGGCCAATCCTCGG
193 GGGTT-----AG-AGG---AGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCAATCCCCAG
* *
23515678 CTTACGCATTCTACCTCTTCGACGGGCTGAGCACCTGTACGCTCGTTTCATGGGTTGGCTTAGGC
249 CTTACGCATTCTACCTCTCCGACGGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGC
23515743 ATAGGGAGTTCATTCCATGTCTAAGCCCCAG
314 ATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* ** * * * ** * * * *
23515774 CTGGATTGAGGGTTCTGGTAGCGGGACCGACAGCACGCAGCGGGGGACTGGGCTAATCCCCGGCT
1 CCGGACCGAGGGTTCTGGCAACGGGATCGACAGCACGCAAAGGGGGACCGAGCCAATCCCCAGCT
* * * * * * *
23515839 TGCGCATTTTGCCTCTTAAGTCGACTGAGTGCCCACATGCTCATTT-TGTGGGTTGACCTAGGCA
66 TGCGCATTATGCCTCTTCAGCCGACTGA-AGCCCGCATGCTCGTTTCT-TGGGTTGACTTAGGCA
* * *
23515903 TACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAGGATCAGATC-GGACCG
129 TACGGAGTTCAT-CCCAGTCTAAGCATACAGAATTCATTCCCAGTCTAAGATC-GATCTGGACCG
* * * *
23515967 AGGGTT-G-TG-GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTGCGCA
192 AGGGTTAGAGGAGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCAATCCCCAGCTTACGCA
* *
23516029 TTCTGCCTCTCCGATC-GGCTGAGCGCCCGCTCAC-C-CGTTTCATGGGTTGGCTTAGGCATAGG
257 TTCTACCTCTCCGA-CGGGCTGAGCACCCG-T-ACGCTCGTTTCATGGGTTGGCTTAGGCATAGG
23516091 GAGTTCATTCCATGTCTAAGCCCCAG
319 GAGTTCATTCCATGTCTAAGCCCCAG
* * * * *
23516117 CCGGACCGAGTGTTGTGGCAATGGGATCGGCAGCCCGCAAAGGGGGACCGAGCCAATCCCCAGCT
1 CCGGACCGAGGGTTCTGGCAACGGGATCGACAGCACGCAAAGGGGGACCGAGCCAATCCCCAGCT
* * * * * * *
23516182 TACGCATTATGCCTTTTCGGCCGACTCAACACCCGCACGCTCGTTTCTTGGGTTGACTTATGCAT
66 TGCGCATTATGCCTCTTCAGCCGACTGAA-GCCCGCATGCTCGTTTCTTGGGTTGACTTAGGCAT
*
23516247 ACGGAGTTTATTCCCAGTCTAAG
130 ACGGAGTTCA-TCCCAGTCTAAG
23516270 ATCAGATCGA
Statistics
Matches: 405, Mismatches: 80, Indels: 33
0.78 0.15 0.06
Matches are distributed among these distances:
343 235 0.58
344 5 0.01
345 2 0.00
347 1 0.00
349 1 0.00
354 31 0.08
355 124 0.31
356 6 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (344 bp):
CCGGACCGAGGGTTCTGGCAACGGGATCGACAGCACGCAAAGGGGGACCGAGCCAATCCCCAGCT
TGCGCATTATGCCTCTTCAGCCGACTGAAGCCCGCATGCTCGTTTCTTGGGTTGACTTAGGCATA
CGGAGTTCATCCCAGTCTAAGCATACAGAATTCATTCCCAGTCTAAGATCGATCTGGACCGAGGG
TTAGAGGAGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCAATCCCCAGCTTACGCATTCT
ACCTCTCCGACGGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
TTCCATGTCTAAGCCCCAG
Found at i:23516392 original size:158 final size:158
Alignment explanation
Indices: 23515926--23516427 Score: 507
Period size: 158 Copynumber: 3.2 Consensus size: 158
23515916 CCCAATCTAA
* * *
23515926 GCATACAGAGTTCATTCCCA-GTCTAGGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGTAGGATCGAC
* * * *
23515990 AGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
65 ACCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGAGCATTCTGCCTCTTCGATCGGCTGAGCGC
* *
23516055 CCGCTCA-CCCGTTTCATGGGTTGGCTTAG
130 CCG-TAAGCTCGTTTCATGGGTTGGCTTAG
* ** * * * * *
23516084 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGTGTTGTGGCAATGGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTGTGGCAGTAGGATCGAC
* * * * * ** * * *
23516148 AGCC-CGCAAAGGGGGACCGAGCCAATCCCCAGCTT-ACGCATTATGCCTTTTCGGCCGACTCAA
65 A-CCACGC-AGGGGGGACCGGGCCGATCCCCAGCTTGA-GCATTCTGCCTCTTCGATCGGCTGAG
* * * * * *
23516211 CACCCGCACGCTCGTTTCTTGGGTTGACTTAT
127 CGCCCGTAAGCTCGTTTCATGGGTTGGCTTAG
* *
23516243 GCATACGGAGTTTATTCCCA-GTCTAAGATCAGATC-GAACGAGGGTTGCT-GCAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTG-TGGCAGTAGGATCGA
* *
23516305 CACCACGCAGGGGGGGATCGGGCCGATCCCCAGCTTGAGCATTCTGCCTCTTCGTTCGGCTGAGC
64 CACCACGCA-GGGGGGACCGGGCCGATCCCCAGCTTGAGCATTCTGCCTCTTCGATCGGCTGAGC
* *
23516370 GCCCGTAAGCTCATTTCGTGGGTTGGCTTAG
128 GCCCGTAAGCTCGTTTCATGGGTTGGCTTAG
*
23516401 GCATAGGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
23516428 CCCCTGCCAG
Statistics
Matches: 268, Mismatches: 63, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
157 9 0.03
158 164 0.61
159 92 0.34
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGTAGGATCGACA
CCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGAGCATTCTGCCTCTTCGATCGGCTGAGCGCC
CGTAAGCTCGTTTCATGGGTTGGCTTAG
Found at i:23516553 original size:317 final size:317
Alignment explanation
Indices: 23515926--23516586 Score: 853
Period size: 317 Copynumber: 2.1 Consensus size: 317
23515916 CCCAATCTAA
* * *
23515926 GCATACAGAGTTCATTCCCAGTCTAGGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAACGAGGGTTGTGGCAGCAGGATCGACA
* * *
23515991 GCACGCAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
66 CCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGAGCATTCTGCCTCTCCGATCGGCTGAGCGCC
* * *
23516056 CGCTCACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
131 CGCTAACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
* * * * * *
23516121 ACCGAGTGTTGTGGCAATGGGATCGGCAGCCCGCAAAGGGGGACCGAGCCAATCCCCAGCTTACG
196 ACCGAGGGTTGTGGCAACGCGACCAGCAGCACGCAAAGGGGGACCGAGCCAATCCCCAGCTTACG
* * * * *
23516186 CATTATGCCTTTTCGGCCGACTCAACACCCGCACGCTCGTTTCTTGGGTTGACTTAT
261 CATTATGCCTTCTCGGCCGACTCAACACCCACACACTCGTTTCATGGGTTGACTTAG
* *
23516243 GCATACGGAGTTTATTCCCAGTCTAAGATCAGATC-GAACGAGGGTTGCT-GCAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAACGAGGGTTG-TGGCAGCAGGATCGAC
* * *
23516306 ACCACGCAGGGGGGGATCGGGCCGATCCCCAGCTTGAGCATTCTGCCTCTTCGTTCGGCTGAGCG
65 ACCACGCA-GGGGGGACCGGGCCGATCCCCAGCTTGAGCATTCTGCCTCTCCGATCGGCTGAGCG
* * *
23516371 CCCG-TAAGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCTGC
129 CCCGCTAA-CCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * * * * * * ***
23516435 CAGACCGAGGGTTGTGGGAGCGCGACCAGCCGCAGGTAGAGGGGGATCGGGCCCATCCTTGGCTT
193 CAGACCGAGGGTTGTGGCAACGCGACCAGCAGCACGCAAAGGGGGACCGAGCCAATCCCCAGCTT
* * * *
23516500 GCGCATTATGCC-TCTCTGGCCGGCTCAACGCCCACACACTTGTTTCATGGGTTGACTTAG
258 ACGCATTATGCCTTCTC-GGCCGACTCAACACCCACACACTCGTTTCATGGGTTGACTTAG
*
23516560 GCATACGGAGTACATTCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
23516587 CATACGGAGT
Statistics
Matches: 294, Mismatches: 46, Indels: 8
0.84 0.13 0.02
Matches are distributed among these distances:
316 36 0.12
317 258 0.88
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.23
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAACGAGGGTTGTGGCAGCAGGATCGACA
CCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGAGCATTCTGCCTCTCCGATCGGCTGAGCGCC
CGCTAACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
ACCGAGGGTTGTGGCAACGCGACCAGCAGCACGCAAAGGGGGACCGAGCCAATCCCCAGCTTACG
CATTATGCCTTCTCGGCCGACTCAACACCCACACACTCGTTTCATGGGTTGACTTAG
Found at i:23516596 original size:26 final size:26
Alignment explanation
Indices: 23516560--23516612 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23516550 GTTGACTTAG
*
23516560 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAATCTAA
*
23516586 GCATACGGAGTGCATTCCCAATCTAA
1 GCATACGGAGTACATTCCCAATCTAA
23516612 G
1 G
23516613 ATCCGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAATCTAA
Found at i:23516922 original size:660 final size:658
Alignment explanation
Indices: 23515634--23517088 Score: 1740
Period size: 660 Copynumber: 2.2 Consensus size: 658
23515624 GCAGGACAAG
** * * * * *
23515634 CAGCAGGATTTACAGCACGTAGGGGGGATCGGGCCAATCCTCGGCTTACGCATTCTACCTCTTCG
1 CAGCAGGATCGACAACACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCG
* * *
23515699 ACGGGCTGAGCACCTGTACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
66 TC-GGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
** ** * * * *
23515764 TAAGCCCCAGCTGGATTGAGGGTTCTGGTAGCGGGACCGACAGCACGCAGCGGGGGACTGGGCTA
130 TAAGCCCCAGCCAGACCGAGGGTTCTGGGAGCGCGACCGACAGCACGCAGAGGGGGACTGGGCCA
* * * ** ** **
23515829 ATCCCCGGCTTGCGCATTTTGCCTCTTAAGTCGACTGAGTGCCCACATGCTCATTTTGTGGGTTG
195 ATCCCCGGCTTGCGCATTATGCCTCTTAAGCCGACTCAACGCCCACACACTCATTTCATGGGTTG
* * * *
23515894 ACCTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAGGATCAGA
260 ACCTAGGCATACGGAGTACATCCCCAATCTAAGCATACAGAGTGCATTCCCAATCTAAGATCAGA
* ** * * *
23515959 TCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCAGCTT
325 CCGGACCGAGGGTTACGGCAGCAGGATCGAAAGCAC-CAGGGGGGACAGGCTCGATCCCCAGCTT
* * * * *
23516024 GCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCTCACCCGTTTCATGGGTTGGCTTAGGCATA
389 ACGCATTCTGCCTCTCCGATCAGCTGAGCACCCGCACACCCATTTCATGGGTTGGCTTAGGCATA
* * ** *
23516089 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGTGTTGTGGCAATGGGATCGGCAGCCCG
454 GGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAGGGTTGTGGCAACAGGATCGGCAGCACG
* *
23516154 CAAAGGGGGACCGAGCCAATCCCCAGCTTACGCATTATGCCTTTTCGGCCGACTCAACACCCGCA
519 CAAAGGGGGACCGAGCCAATCCCCAGCTTACGCATTATGCCTTCTCGGCAGACTCAACACCCGCA
* * * * * *
23516219 CGCTCGTTTCTTGGGTTGACTTATGCATACGGAGTTTATTCCCAGTCTAAGATCAGATC-GAACG
584 CACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACA
23516283 AGGGTTGCTG-
649 AGGGTTGC-GA
* * *
23516293 CAGTAGGATCGACACCACGCAGGGGGGGATCGGGCCGATCCCCAGCTTGA-GCATTCTGCCTCTT
1 CAGCAGGATCGACAACACGCA-GGGGGGATCGGGCCGATCCCCGGCTT-ACGCATTCTGCCTCTT
* * *
23516357 CGTTCGGCTGAGCGCCCGTAAGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
64 CG-TCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* * * * *
23516422 TCTAAGCCCCTGCCAGACCGAGGGTTGTGGGAGCGCGACC-AGCCGCAGGTAGAGGGGGA-TCGG
128 TCTAAGCCCCAGCCAGACCGAGGGTTCTGGGAGCGCGACCGA-CAGCACGCAGAGGGGGACT-GG
* ** * * **
23516485 GCCCATCCTTGGCTTGCGCATTATGCCTCTCT-GGCCGGCTCAACGCCCACACACTTGTTTCATG
191 GCCAATCCCCGGCTTGCGCATTATGCCTCT-TAAGCCGACTCAACGCCCACACACTCATTTCATG
* * * *
23516549 GGTTGACTTAGGCATACGGAGTACATTCCCAGTCTAAGCATACGGAGTGCATTCCCAATCTAAGA
255 GGTTGACCTAGGCATACGGAGTACATCCCCAATCTAAGCATACAGAGTGCATTCCCAATCTAAGA
*
23516614 TCCGACCGGACCGAGGGTTACGGCAGCAGGATCGATAATGCA-CAGGGGGGACTAGGCT-GATCC
320 TCAGACCGGACCGAGGGTTACGGCAGCAGGATCGA-AA-GCACCAGGGGGGAC-AGGCTCGATCC
* * *
23516677 CCGGCTTACGCATTCTGCCTCTCCGATCAGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTT
382 CCAGCTTACGCATTCTGCCTCTCCGATCAGCTGAGCACCCGCACACCCATTTCATGGGTTGGCTT
* * *
23516742 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGATCGAGGGTTGTGGCAGCAGGATTGG
447 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAGGGTTGTGGCAACAGGATCGG
* * * * * * * * * *
23516807 TAGCAGGTAGAGGGGGATCGGGTCGATCCCCAGGTTACGCATTATGCC-TCTCTGGCAGGCTCAA
512 CAGCACGCAAAGGGGGACCGAGCCAATCCCCAGCTTACGCATTATGCCTTCTC-GGCAGACTCAA
* * *
23516871 CGCCCGTACACTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
576 CACCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
*
23516936 CCAGACCAAGGGTTGCGA
641 CCAGAACAAGGGTTGCGA
* * * * * * *
23516954 TAGCAGGATCGACAACACGTAGGGGTGATCGGGTCGATCCCCGGCTTACACATTCTGCCTATCCG
1 CAGCAGGATCGACAACACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCG
* * **
23517019 ATCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
66 -TCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
23517084 TAAGC
130 TAAGC
23517089 ATACGGAGTT
Statistics
Matches: 668, Mismatches: 115, Indels: 25
0.83 0.14 0.03
Matches are distributed among these distances:
659 22 0.03
660 608 0.91
661 35 0.05
662 3 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (658 bp):
CAGCAGGATCGACAACACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCG
TCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
AAGCCCCAGCCAGACCGAGGGTTCTGGGAGCGCGACCGACAGCACGCAGAGGGGGACTGGGCCAA
TCCCCGGCTTGCGCATTATGCCTCTTAAGCCGACTCAACGCCCACACACTCATTTCATGGGTTGA
CCTAGGCATACGGAGTACATCCCCAATCTAAGCATACAGAGTGCATTCCCAATCTAAGATCAGAC
CGGACCGAGGGTTACGGCAGCAGGATCGAAAGCACCAGGGGGGACAGGCTCGATCCCCAGCTTAC
GCATTCTGCCTCTCCGATCAGCTGAGCACCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAGGGTTGTGGCAACAGGATCGGCAGCACGCA
AAGGGGGACCGAGCCAATCCCCAGCTTACGCATTATGCCTTCTCGGCAGACTCAACACCCGCACA
CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACAAG
GGTTGCGA
Found at i:23517060 original size:158 final size:158
Alignment explanation
Indices: 23516586--23517087 Score: 516
Period size: 158 Copynumber: 3.2 Consensus size: 158
23516576 CCCAGTCTAA
* * * *
23516586 GCATACGGAGTGCATTCCCA-ATCTAAGATCCGACCGGACCGAGGGTTACGGCAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAT
* * *
23516650 AATGCAC--AGGGGGGACTAGGCT-GATCCCCGGCTTACGCATTCTGCCTCTCCGATCAGCTGAG
65 AA--CACGTAGGGGGGA-TCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAG
* * * *
23516712 CACCCGCACGCCCATTTCGTGGGTTGGCTTAG
127 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * *
23516744 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGA-CGGATCGAGGGTTGTGGCAGCAGGATTGGT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAT
* * * * * * *
23516808 AGCAGGTAGAGGGGGATCGGGTCGATCCCCAGG-TTACGCATTATGCCTCTCTG-GCAGGCTCAA
65 AACACGTAG-GGGGGATCGGGTCGATCCCC-GGCTTACGCATTCTGCCTCTCCGATC-GGCTGAG
* * * *
23516871 CGCCCGTACACTTGTTTCATGGGTTGACTTAG
127 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** *
23516903 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCAAGGGTTGCGATAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAT
* * * *
23516967 AACACGTAGGGGTGATCGGGTCGATCCCCGGCTTACACATTCTGCCTATCCGATCGGCTGAGTGC
65 AACACGTAGGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGC
23517032 CCGCACGCTCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
23517061 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
23517088 CATACGGAGT
Statistics
Matches: 274, Mismatches: 57, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
156 2 0.01
157 8 0.03
158 146 0.53
159 113 0.41
160 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
ACACGTAGGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:23517111 original size:26 final size:26
Alignment explanation
Indices: 23517061--23517113 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23517051 GTTGGCTTAG
*
23517061 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
23517087 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
23517113 G
1 G
23517114 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:23518093 original size:26 final size:26
Alignment explanation
Indices: 23518063--23518115 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23518053 GTAGACTTAG
*
23518063 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
23518089 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
23518115 G
1 G
23518116 ATCGAATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23519787 original size:26 final size:26
Alignment explanation
Indices: 23519758--23519810 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23519748 GTTGGCTTAG
*
23519758 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23519784 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23519810 G
1 G
23519811 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23519992 original size:26 final size:26
Alignment explanation
Indices: 23519953--23520008 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
23519943 TGGGTTGACT
23519953 TAAGCATACAGAGTCCATCCCCAGTC
1 TAAGCATACAGAGTCCATCCCCAGTC
* * *
23519979 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTCCATCCCCAGTC
23520005 TAAG
1 TAAG
23520009 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (26 bp):
TAAGCATACAGAGTCCATCCCCAGTC
Found at i:23520051 original size:198 final size:196
Alignment explanation
Indices: 23519732--23520096 Score: 489
Period size: 198 Copynumber: 1.9 Consensus size: 196
23519722 TGAGCACCCC
* * * * ** *
23519732 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACGGAGTTC
1 CACGCTCGTTTCATGGGTTGACTTAAGCATACAGAGTCCATCCCATGTCTAAGCATACGGAGTTC
* * *
23519797 ATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGAACGGGGG
66 ATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACG--CAGGGG
* *
23519862 GACCGGGTCGATCCCCGACTTACGCATTGTGCCTCTCCGATCGGCCTCTCTGGCCGGCTGAGTGC
129 GACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCCTCTCTGGCCGGCTGAGTGC
23519927 CCA
194 CCA
23519930 CACGCTCGTTTCATGGGTTGACTTAAGCATACAGAGTCCATCCCCA-GTCTAAGCATACGGAGTT
1 CACGCTCGTTTCATGGGTTGACTTAAGCATACAGAGTCCAT-CCCATGTCTAAGCATACGGAGTT
* * * * * *
23519994 CATTCCCAGTCTAAGATCAGACCAGACTGATGGTTGCGATAGTAGGATCGGCAGCACGCAGGGGG
65 CATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGG
* * * * *
23520059 ATCGGGCCGATCCTCGGCTTGCTCATTCTGCCTCTCCG
130 ACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCG
23520097 GCTGACTGAG
Statistics
Matches: 143, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
196 37 0.26
198 103 0.72
199 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (196 bp):
CACGCTCGTTTCATGGGTTGACTTAAGCATACAGAGTCCATCCCATGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGA
CCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCCTCTCTGGCCGGCTGAGTGCCC
A
Found at i:23521511 original size:26 final size:25
Alignment explanation
Indices: 23521481--23521529 Score: 89
Period size: 26 Copynumber: 1.9 Consensus size: 25
23521471 GGCTTAGGCA
23521481 TACGGAGTTCATTCCATGTCTAAGCG
1 TACGGAGTTCATTCCA-GTCTAAGCG
23521507 TACGGAGTTCATTCCAGTCTAAG
1 TACGGAGTTCATTCCAGTCTAAG
23521530 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.31
Consensus pattern (25 bp):
TACGGAGTTCATTCCAGTCTAAGCG
Found at i:23521641 original size:184 final size:184
Alignment explanation
Indices: 23521323--23521689 Score: 477
Period size: 184 Copynumber: 2.0 Consensus size: 184
23521313 TCATGGGGCA
* * *
23521323 TACGGAGTTCATTCCTAGTTTAAGATCAGATCAGACCGAGGGTTGCGGCAGTAGGATTGATAGCA
1 TACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCCGCAGTAGGATCGATAGCA
* * * *** * * * ** *
23521388 TGCAGAGGGGACCGGGCTGATCCTCGGCTTGTGCATTCTGCCTCTCCGGCCAGCTGAGCGTCGGC
66 CGCAGAGGGGACAGGGCTGATCCCCGGCTTCCACAATCTACCTCTCCGACCAGCTGAGCACCCGC
23521453 ACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCG
131 ACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCG
* * ** *
23521507 TACGGAGTTCATTCC-AGTCTAAGATCGGATCGGATTGAGGGTTGCCGCAGTAGGATCGGTAGCA
1 TACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCCGCAGTAGGATCGATAGCA
* * * *
23521571 CGCAGGGGGGGACAGGG-TCGATCCCCGGCTTCCACAATCTACCTCTCCGATCGGTTGAGCACCC
66 CGCA-GAGGGGACAGGGCT-GATCCCCGGCTTCCACAATCTACCTCTCCGACCAGCTGAGCACCC
*
23521635 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
129 GCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
23521690 CCCAGCCATA
Statistics
Matches: 156, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
183 45 0.29
184 111 0.71
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (184 bp):
TACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCCGCAGTAGGATCGATAGCA
CGCAGAGGGGACAGGGCTGATCCCCGGCTTCCACAATCTACCTCTCCGACCAGCTGAGCACCCGC
ACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCG
Found at i:23522062 original size:353 final size:353
Alignment explanation
Indices: 23521384--23522076 Score: 811
Period size: 353 Copynumber: 2.0 Consensus size: 353
23521374 TAGGATTGAT
* ** ** **
23521384 AGCATGCAGAGGGGACCGGGCTGATCCTCGGCTTGTGCATTCTGCCTCTCCGGCCAGCTGAGCGT
1 AGCACGCAGAGGGGACCGGGCTGATCCTCGGCTTGTGCATTAGGCCTCTCCAACCAGCTGAGCAC
* * * * *
23521449 CGGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCGTACGGAG
66 CCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATACGGAG
* *
23521514 TTCATTCCAGTCTAAGATCGGATCGGATTGAGGGTTGCCGCAGTAGGATCGGTAGCACGCAGGGG
131 TTCATTCCAGTCTAAGATCGGATCGGACTGAGGGTTGCCGCAGTAAGATCGGTAGCACGCA-GGG
* * * * ** * *
23521579 GGGACAGGGTCGATCCCCGGCTTCCACAATCTACCTCTCCGATCGGTTGAGCACCCGCACGCTCA
195 GGGACAGAGCCGATCCCCAGCTTCCACAATCTACCTCTCCGACCGACTGAGCACCCACACGCCCA
* *
23521644 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCATACCAAGGGTT
260 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTT
*
23521709 GTGGTAGCAGGACTGACAGCGGGATTGGC
325 GTGGCAGCAGGACTGACAGCGGGATTGGC
* * * * *
23521738 AGCACGCAGAGGGGGATCGGGCTGATCCTTGGCTTG-GCATTAGGCCTCTCCAATCGGTTGAGCA
1 AGCACGCAGA-GGGGACCGGGCTGATCCTCGGCTTGTGCATTAGGCCTCTCCAACCAGCTGAGCA
* * * * *
23521802 CCCGCATGCTCGTTTCATGGGTTGACTTTGGCATTCATAGTTCATCCC-TAGTCTAAGCATACGG
65 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCAT-GTCTAAGCATACGG
* *
23521866 AGTTCATTCCCAGTTTAAGATCGGA-CGGGACTGAGGGTTG-CGACAGTAAGATCGGTAGCATGC
129 AGTTCATT-CCAGTCTAAGATCGGATC-GGACTGAGGGTTGCCG-CAGTAAGATCGGTAGCACGC
** *** * * * * **
23521929 A-GGGGGATTGAGCCGATCCCCAGCTTGTGCATTCTGCCTCTCTGGCCGACTGAGCGTCCACACG
191 AGGGGGGACAGAGCCGATCCCCAGCTTCCACAATCTACCTCTCCGACCGACTGAGCACCCACACG
* * * * *
23521993 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTCTAGTCAGACCAAG
256 CCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAG
*
23522058 GGTTGTGGCAGCGGGACTG
321 GGTTGTGGCAGCAGGACTG
23522077 GCAGTACTTA
Statistics
Matches: 280, Mismatches: 54, Indels: 11
0.81 0.16 0.03
Matches are distributed among these distances:
353 120 0.43
354 91 0.32
355 69 0.25
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.25
Consensus pattern (353 bp):
AGCACGCAGAGGGGACCGGGCTGATCCTCGGCTTGTGCATTAGGCCTCTCCAACCAGCTGAGCAC
CCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATACGGAG
TTCATTCCAGTCTAAGATCGGATCGGACTGAGGGTTGCCGCAGTAAGATCGGTAGCACGCAGGGG
GGACAGAGCCGATCCCCAGCTTCCACAATCTACCTCTCCGACCGACTGAGCACCCACACGCCCAT
TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTG
TGGCAGCAGGACTGACAGCGGGATTGGC
Found at i:23522252 original size:159 final size:157
Alignment explanation
Indices: 23521997--23522677 Score: 508
Period size: 159 Copynumber: 4.3 Consensus size: 157
23521987 CACACGCCCG
* * * *
23521997 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTCTAGTCAGACCAAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATC-AGCCAGACCAAGGGTT
* * * * * *
23522062 GTGGCAGCGGGACTGGCAGTACTTAGAGGGGGATCGGGCTGATCCCCGACTTGCGCATTATGCCT
65 GTGGCAGCAGGATTGACAGCAC-TAGAGGGGGACCGGACTGATCCCCGACTTGCGCATTATGCCT
* * * *
23522127 CTTCTATCGGCTCAGCACCTGCATGCTCA
129 CTCCGACCGGCTCAGCACCCGCATGCTCA
* * * * * *
23522156 TTTCGTGGGTTGACTTATGCATACGGAATTCATTCC-TAGTCTAATATCAGATCGGACCAAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGATCAG-CCAGACCAAGGGT
* * * * * * * *
23522220 TGTGGTAGCAGGATTGACAGCACACTAG-GGGGGATCGTACCGATCCCCGGCTTACGTATTCTGC
64 TGTGGCAGCAGGATTGACAG--CACTAGAGGGGGACCGGACTGATCCCCGACTTGCGCATTATGC
* * * * * *
23522284 CTCTCCGGCCGGTTGAGCACCCGTATGCCCG
127 CTCTCCGACCGGCTCAGCACCCGCATGCTCA
* * * * ** * *
23522315 TTTCATGGGTTGGCTTAGGCATAGGGTGTTGATTCCATGTCTAAGCCCCAGCCAGTCCGAA-GGC
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ATCAGCCAGACC-AAGGGT
* * * * * * * *
23522379 TGT-GCTAGCAAGATTGGCAGCACGTCGAAGGGGACCGGGCTAATCCCCGACTTGCGTAATATGC
64 TGTGGC-AGCAGGATTGACAGCAC-TAGAGGGGGACCGGACTGATCCCCGACTTGCGCATTATGC
* * ** * * *
23522443 CTCTTCGGCCGGCTCAGTGCCCGTACGCTTA
127 CTCTCCGACCGGCTCAGCACCCGCATGCTCA
* * * * * *
23522474 TTTCGTGGGTTGACTTATGCGTACAGAGTTCATTCC-TAGTCTAAGATCAGACCAGATCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGATCAG-CCAGACCAAGGGT
* * * * ** * * * *
23522538 TGTAGCAGCAGGATGGACAACACATAGAGCGGGACCCAACTGATCCCTGACTTGCACATTCTACC
64 TGTGGCAGCAGGATTGACAGCAC-TAGAGGGGGACCGGACTGATCCCCGACTTGCGCATTATGCC
* * *
23522603 TCTCCGATCGGCTAAGCACCCGCATGCTCG
128 TCTCCGACCGGCTCAGCACCCGCATGCTCA
**
23522633 TTTCGTGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
23522678 CATAGGGAGT
Statistics
Matches: 394, Mismatches: 113, Indels: 30
0.73 0.21 0.06
Matches are distributed among these distances:
157 3 0.01
158 11 0.03
159 366 0.93
160 12 0.03
161 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (157 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGCCAGACCAAGGGTTG
TGGCAGCAGGATTGACAGCACTAGAGGGGGACCGGACTGATCCCCGACTTGCGCATTATGCCTCT
CCGACCGGCTCAGCACCCGCATGCTCA
Found at i:23522508 original size:318 final size:318
Alignment explanation
Indices: 23521992--23522678 Score: 795
Period size: 318 Copynumber: 2.2 Consensus size: 318
23521982 GCGTCCACAC
* * *
23521992 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTCTAGTCAGACCAA
1 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAA
* ** * * * * * *
23522057 GGGTTGTGGCAGCGGGACTGGCAGTACTTAGAGGGGGATCGGGCTGATCCCCGACTTGCGCATTA
66 GGGCTGTGGCAGCAAGACTGGCAGCACGTAGAAGGGGACCGGGCTAATCCCCGACTTGCGCAATA
* * * * *
23522122 TGCCTCTTCTATCGGCTCAGCACCTGCATGCTCATTTCGTGGGTTGACTTATGCATACGGAATTC
131 TGCCTCTTCGACCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTATGCATACAGAATTC
* * * * * * * *
23522187 ATTCCTAGTCTAATATCAGATCGGACCAAGGGTTGTGGTAGCAGGATTGACAGCACACTAG-GGG
196 ATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGTAGCAGCAGGATGGACAACACA-TAGAGCG
* ** * ** * * * * *
23522251 GGATCGTACCGATCCCCGGCTTACGTATTCTGCCTCTCCGGCCGGTTGAGCACCCGTAT
260 GGACCCAACCGATCCCCGACTTACACATTCTACCTCTCCGACCGGCTAAGCACCCGCAT
* * *
23522310 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGTGTTGATTCCATGTCTAAGCCCCAGCCAGTCCGA
1 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACC-A
* * *
23522375 A-GGCTGT-GCTAGCAAGATTGGCAGCACGTCGAAGGGGACCGGGCTAATCCCCGACTTGCGTAA
65 AGGGCTGTGGC-AGCAAGACTGGCAGCACGTAGAAGGGGACCGGGCTAATCCCCGACTTGCGCAA
* ** * * * *
23522438 TATGCCTCTTCGGCCGGCTCAGTGCCCGTACGCTTATTTCGTGGGTTGACTTATGCGTACAGAGT
129 TATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTATGCATACAGAAT
* *
23522503 TCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTGTAGCAGCAGGATGGACAACACATAGAGC
194 TCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGTAGCAGCAGGATGGACAACACATAGAGC
* * * *
23522568 GGGACCCAACTGATCCCTGACTTGCACATTCTACCTCTCCGATCGGCTAAGCACCCGCAT
259 GGGACCCAACCGATCCCCGACTTACACATTCTACCTCTCCGACCGGCTAAGCACCCGCAT
* * **
23522628 GCTCGTTTCGTGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGC
1 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
23522679 ATAGGGAGTT
Statistics
Matches: 305, Mismatches: 61, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
317 5 0.02
318 298 0.98
319 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.26
Consensus pattern (318 bp):
GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAA
GGGCTGTGGCAGCAAGACTGGCAGCACGTAGAAGGGGACCGGGCTAATCCCCGACTTGCGCAATA
TGCCTCTTCGACCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTATGCATACAGAATTC
ATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGTAGCAGCAGGATGGACAACACATAGAGCGG
GACCCAACCGATCCCCGACTTACACATTCTACCTCTCCGACCGGCTAAGCACCCGCAT
Found at i:23522793 original size:11 final size:11
Alignment explanation
Indices: 23522773--23522816 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
23522763 CCCGGGGCAC
*
23522773 CATCGTCGGAG
1 CATCGCCGGAG
23522784 CATCGCCGGAG
1 CATCGCCGGAG
*
23522795 CATCACCGGAG
1 CATCGCCGGAG
*
23522806 CATCGTCGGAG
1 CATCGCCGGAG
23522817 AGCCTAACCG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.20, C:0.32, G:0.34, T:0.14
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:23524131 original size:26 final size:26
Alignment explanation
Indices: 23524095--23524145 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23524085 GTTGACTTAG
*
23524095 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
23524121 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
23524146 TGATCGAACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:23524424 original size:159 final size:158
Alignment explanation
Indices: 23524214--23524623 Score: 436
Period size: 159 Copynumber: 2.6 Consensus size: 158
23524204 CTGGTCCCCG
* * * * *
23524214 GCTTACGCATTCTGCCTCTTCGGCTGGCTAAGCGCCTGCACACCCGTTTCGTGGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTTCGGCAGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* * * * *
23524279 CATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGATCGAGGGTTGTGGCAGCGGGACCAACA
66 CATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTATGGCAGCAGGACCAACA
* *
23524343 GTACGTAAA-GGGGGATCGGGCCAATCCTCA
131 GCAC--AAAGGGGGGACCGGGCCAATCC-CA
* * * * *
23524373 GCTTGCGCATTATGCCTCTTCGGCAGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATG
1 GCTTGCGCATTCTGCCTCTTCGGCAGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* * * * * *
23524438 CATACGGAGTTCATTCCCA-GTCTAA-AATCAGACCAGACCGAGGGTTATGGCAGTAGGATCGAT
66 CATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTATGGCAGCAGGACCAAC
* *
23524501 AGCACAAAGGGGGGACCGGGCCCATCCCT
130 AGCACAAAGGGGGGACCGGGCCAATCCCA
* * * * *
23524530 GACTTGCGCATTCTACCAC-TCTG-ATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTT
1 G-CTTGCGCATTCTGCCTCTTCGGCA--GGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
*
23524593 AGGCATACTGAGTTCATTCCATGTCTAAGCA
63 AGGCATACGGAGTTCATTCCATGTCTAAGCA
23524624 TACGGAGTTC
Statistics
Matches: 207, Mismatches: 36, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
156 1 0.00
157 11 0.05
158 88 0.43
159 104 0.50
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (158 bp):
GCTTGCGCATTCTGCCTCTTCGGCAGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTATGGCAGCAGGACCAACA
GCACAAAGGGGGGACCGGGCCAATCCCA
Found at i:23524625 original size:26 final size:26
Alignment explanation
Indices: 23524595--23524647 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23524585 GTTGGCTTAG
*
23524595 GCATACTGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23524621 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23524647 G
1 G
23524648 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23525686 original size:26 final size:26
Alignment explanation
Indices: 23525656--23525708 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23525646 GTTGACTTAG
*
23525656 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
23525682 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
23525708 G
1 G
23525709 ATTAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:23525887 original size:343 final size:339
Alignment explanation
Indices: 23525283--23526210 Score: 1141
Period size: 343 Copynumber: 2.7 Consensus size: 339
23525273 CGGCTGAGCG
*
23525283 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGA
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGA
* * * ** *
23525348 GTTCATTCCTAGTGTAAGATCAGA-TCGGACCGAGGGTTGTGACAGCAAGATCGGCAGCACGCAG
66 GTTCATTCC-AGTCTAAGATCAGACT-GGGCTGAGGGTTACGACAGCAAGATCGACAGCACGCAG
* * * * * *
23525412 GAAGGA-CCGGATCGATCCCAAGCTTGCGGATTCTGCCTCTCCGGCC-AGCTGAGCGCCCACACA
129 GAGGGATCGGGCT-GATCCCAAGCTTGCGCATTCTGCCTCTCCGACCGA-CTGAGCTCCCA-AC-
* *
23525475 CCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAG
190 GCTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAG
* * *
23525540 GGTTGTGGCAGCGGGACTGGCAGCACGCAGAAGGGGATCGGGCTGATCCCCGACTTACGCATTAT
255 GGTTGTGGCAGCAGGACCGACAGCACGCAGAAGGGGATCGGGCTGATCCCCGACTTACGCATTAT
*
23525605 GCCTCTCCGGAT-GACTCAGC
320 GCCTCTCCGG-TCGACTCAAC
* *
23525625 TCCCGCACGCTCGTTTCATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
1 -CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAG
* * * *
23525690 AGTTCATTCTCAGTCTAAGATTAGACTGGGCTGAGGGTTACGGCAGCATGATCGACAGCACGTAG
65 AGTTCATTC-CAGTCTAAGATCAGACTGGGCTGAGGGTTACGACAGCAAGATCGACAGCACGCAG
* * * *
23525755 GAGGGATCGGGCTGATCCTC-AGCTTACGCATTCTGCCTCTCCGATCGATTGAGTTCCCATACGT
129 GAGGGATCGGGCTGATCC-CAAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCTCCCA-ACG-
* *
23525819 CTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC-AGATCGAG
191 CTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGA-ACCGAG
* * * * *
23525883 GGTTGTGGCAGCAGGACCGACAGCACTCAGAGGGGGATTGGGCTGATCCCCGGCTTGCGCATTAT
255 GGTTGTGGCAGCAGGACCGACAGCACGCAGAAGGGGATCGGGCTGATCCCCGACTTACGCATTAT
* *
23525948 GCCTCTCTGGTCGGCTCAAC
320 GCCTCTCCGGTCGACTCAAC
* * *
23525968 CCCTGTACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
1 CCC-GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAG
* * * * *
23526033 AGTTCATTCCAGGTCTAAGATCAGACCGGGCTGAGGGTTACGATAGCAGGATCAACAACACGCAG
65 AGTTCATTCCA-GTCTAAGATCAGACTGGGCTGAGGGTTACGACAGCAAGATCGACAGCACGCAG
* * * ** * *
23526098 GGGGGATCGGGCCGATCCCTAGCTTGCTTATTTTGCCTCTCCAACCGACTGAGCGTCCGC-ACGC
129 GAGGGATCGGGCTGATCCCAAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGC-TCC-CAACGC
** *
23526162 TCATTTCATGGGTTGGCTTAGGCATACTGAGTTCAATCCATGTCTAAGC
192 T-ATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
23526211 ATACGAAGTT
Statistics
Matches: 506, Mismatches: 65, Indels: 28
0.84 0.11 0.05
Matches are distributed among these distances:
342 10 0.02
343 484 0.96
344 11 0.02
345 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (339 bp):
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGA
GTTCATTCCAGTCTAAGATCAGACTGGGCTGAGGGTTACGACAGCAAGATCGACAGCACGCAGGA
GGGATCGGGCTGATCCCAAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCTCCCAACGCTATT
TCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGT
GGCAGCAGGACCGACAGCACGCAGAAGGGGATCGGGCTGATCCCCGACTTACGCATTATGCCTCT
CCGGTCGACTCAAC
Found at i:23526212 original size:26 final size:26
Alignment explanation
Indices: 23526183--23526235 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
23526173 GTTGGCTTAG
23526183 GCATACTG-AGTTCAAT-CCATGTCTAA
1 GCATAC-GAAGTTCAATCCCA-GTCTAA
*
23526209 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
23526235 G
1 G
23526236 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:23527100 original size:26 final size:26
Alignment explanation
Indices: 23527064--23527116 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23527054 GTTAGCTTAG
23527064 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23527090 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23527116 G
1 G
23527117 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23528318 original size:26 final size:26
Alignment explanation
Indices: 23528288--23528340 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23528278 GTTCGCTTAG
*
23528288 GCATACGAAGTTCATACCATGTCTAA
1 GCATACGAAGTTCATACCAAGTCTAA
*
23528314 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATACCAAGTCTAA
23528340 G
1 G
23528341 AATGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATACCAAGTCTAA
Found at i:23528528 original size:26 final size:26
Alignment explanation
Indices: 23528498--23528550 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23528488 GTTGACTTTG
*
23528498 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
23528524 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
23528550 G
1 G
23528551 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23528880 original size:121 final size:121
Alignment explanation
Indices: 23528655--23528881 Score: 301
Period size: 121 Copynumber: 1.9 Consensus size: 121
23528645 CTGAGCACCT
* * * * *
23528655 GCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCGATGTCTAAGCCCCAATCAGA
1 GCACGCCCATTTCATAGGTTGGCATAGGCATAGGGAATTCATTCCATGTCTAAGCCCCAACCAGA
** * * * *
23528720 CCGAGGGTTGTGGCAGTGGGACTGGCTGCACGCAAAGGGGGGCCGGCTAAGCGCCC
66 CCGAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGGGGGGCCGGCTAAGCGCCC
* * *
23528776 GCACGCCCCTTTCGTAGGTTGGCATAGGCATAGGGAATTCATTCCATGTCTAAGCCCCAGCCAGA
1 GCACGCCCATTTCATAGGTTGGCATAGGCATAGGGAATTCATTCCATGTCTAAGCCCCAACCAGA
* * *
23528841 CTGAGGGTTGTGGCAGCAGGACCGACAGCATACAGAGGGGG
66 CCGAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGGGGG
23528882 ACCAGGCTGA
Statistics
Matches: 89, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
121 89 1.00
ACGTcount: A:0.22, C:0.26, G:0.33, T:0.19
Consensus pattern (121 bp):
GCACGCCCATTTCATAGGTTGGCATAGGCATAGGGAATTCATTCCATGTCTAAGCCCCAACCAGA
CCGAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGGGGGGCCGGCTAAGCGCCC
Found at i:23529706 original size:26 final size:26
Alignment explanation
Indices: 23529658--23529709 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
23529648 GTTGACATAG
* *
23529658 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATAAGGAGTTCATCCCAAGTCTAA
**
23529684 GCATAAGGAGTTCATTTCAAGTCTAA
1 GCATAAGGAGTTCATCCCAAGTCTAA
23529710 TATCAGACTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCAAGTCTAA
Found at i:23529892 original size:26 final size:26
Alignment explanation
Indices: 23529842--23529894 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23529832 ATTGGCTTAG
*
23529842 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
23529868 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
23529894 G
1 G
23529895 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:23531162 original size:26 final size:26
Alignment explanation
Indices: 23531125--23531177 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23531115 GTTGACTTAG
*
23531125 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
23531151 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
23531177 G
1 G
23531178 ATCGGACGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:23531655 original size:26 final size:26
Alignment explanation
Indices: 23531626--23531678 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23531616 GTTGGCTTAG
*
23531626 GCATACGGAGTGCATT-CCATGTCTAA
1 GCATACAGAGTGCATTCCCA-GTCTAA
*
23531652 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTGCATTCCCAGTCTAA
23531678 G
1 G
23531679 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTGCATTCCCAGTCTAA
Found at i:23531854 original size:26 final size:26
Alignment explanation
Indices: 23531824--23531876 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23531814 GTTGGCTTAG
23531824 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
23531850 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
23531876 G
1 G
23531877 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:23532172 original size:691 final size:696
Alignment explanation
Indices: 23531107--23532369 Score: 1616
Period size: 691 Copynumber: 1.8 Consensus size: 696
23531097 TGCACGCTCG
* * *
23531107 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCTAG
1 TTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAG
* * * * * ** * *
23531172 TCTAAGATCGGACGGAACCGAGGGTTACGGTAGCAGGATCGGTAGTATGCAGAGGGGATCGAGTC
66 TCTAAGATCAGACGGAACCAAAGCTTAAGGTAGCAGGATCGACAGCATGCAGAGAGGATCGAGTC
*
23531237 GATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGGGCACCCGCACGTCTATTTCAAGGGTT
131 GATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCT-GGCACCCGCACG-CTATTTCAAGGGTT
*
23531302 GGCTTAGGCATAGAGAATTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTATGGCAGCGGG
194 GGCTTAGGCATAGAGAATTCATTCCATGTCTAAGCCCCAGCTGGACCGAAGGTTATGGCAGCGGG
* * * * * * * *
23531367 ACTGGCAGCACGCAGAGAGGGATCGGGCCAATCCTTGGCTTACGCATTATGCCTCTCCGGTCGGC
259 ACCGACAGCACACAGAGAGCGATCAGACCAATCCTCGGCTTACGCATTATGCCTCTCCGGTCGAC
* * * *
23531432 TGAACGCCTGCACGCTCGTTTTGTGGGTTGACTTAGGCATATCGAGTTCATTCCCAGTCTAAGAT
324 TCAACGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATATCGAGTTCATTCCCAGTCTAAGAT
* * * * * *
23531497 TAGA-TAGGATCGAA-GGTTGCAGTAGTAGGATCGACAGCAGGTAGAGGGGATCGGGCTGGTCCC
389 CAGACT-GGA-CCAAGGGTTGCAGCAGCAGGATCGACAACAGGCAG-GGGGATCGGGCTGGTCCC
* * * * ** *
23531560 CGGCTTACGCATTCTGCCTCTCCGACCAGCTGAGCATTCGCATGCTCATTTCATGGGTTGGCTTA
451 CGGCTTACGCATTCTACCCCTCCGACCAGCTAAACACCCGCACGCTCATTTCATGGGTTGGCTTA
* *
23531625 GGCATACGGAGTGCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGA
516 GGCATACGGAATGCATTCCATATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGA
23531690 TCGAGGGTTACTGCAGCAAGACCAGTAGCAGGATCGACAGCATGCAGGAGGGATCGGGCCGATCC
581 TCGAGGGTTACTGCAGCAAGACCAGTAGCAGGATCGACAGCATGCAGGAGGGATCGGGCCGATCC
23531755 CTGGCTTGCATATTCTACCTTTCCAGTCGGCTGAATGCCGGCACGCATTTT
646 CTGGCTTGCATATTCTACCTTTCCAGTCGGCTGAATGCCGGCACGCATTTT
* * * *
23531806 TTTCATGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCATATGGAGTTCATTCCCA
1 TTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATACGAAGTTCATTCCCA
* * *
23531870 GTCTAAGATCAGACCGG-ACCAAAGCTTAAGGTAGTAGGATCGACAGCATGCAGTGAGGATCGGG
65 GTCTAAGATCAGA-CGGAACCAAAGCTTAAGGTAGCAGGATCGACAGCATGCAGAGAGGATCGAG
* * * * * *
23531934 TCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGTTGGCT-G-A-GCGC-C-C-GTTTCATGGGTT
129 TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGGCACCCGCACGCTATTTCAAGGGTT
* * *
23531993 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAAGGTTGTGGCAGCGG
194 GGCTTAGGCATAGAGAATTCATTCCATGTCTAAGCCCCAGCT-GGACCGAAGGTTATGGCAGCGG
* * *
23532057 GACCGATAGCACACAGACGA-CGATCAGACCGATCCTCGGCTTATGCATTATGCCTCTCCGGTCG
258 GACCGACAGCACACAGA-GAGCGATCAGACCAATCCTCGGCTTACGCATTATGCCTCTCCGGTCG
23532121 ACTCAACGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATA-CGGAGTTCATTCCCAGTCTAA
322 ACTCAACGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATATC-GAGTTCATTCCCAGTCTAA
* * * * * * *
23532185 GATCGGACTGGACCAAGGGTTGCGGCAGCAGGATTGACAACATGCAGGGGGGTCGGGTTGGTCCT
386 GATCAGACTGGACCAAGGGTTGCAGCAGCAGGATCGACAACAGGCAGGGGGATCGGGCTGGTCCC
* ** * * * * **
23532250 CGGCTTGCGCATTCTACCCCTTTGGCCGGCTAAACGCCCGTACGCTCATTTTGTGGGTTGGCTTA
451 CGGCTTACGCATTCTACCCCTCCGACCAGCTAAACACCCGCACGCTCATTTCATGGGTTGGCTTA
* * ** *
23532315 GGCATACGGAATTCATTCCCTATCTAAGCATATGGAGTTCATTCCTAGTCTAAGA
516 GGCATACGGAATGCATTCCATATCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
23532370 GTTTGAGCCA
Statistics
Matches: 476, Mismatches: 81, Indels: 23
0.82 0.14 0.04
Matches are distributed among these distances:
690 117 0.25
691 207 0.43
692 4 0.01
694 1 0.00
695 3 0.01
696 1 0.00
697 1 0.00
698 3 0.01
699 136 0.29
700 3 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (696 bp):
TTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAG
TCTAAGATCAGACGGAACCAAAGCTTAAGGTAGCAGGATCGACAGCATGCAGAGAGGATCGAGTC
GATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGGCACCCGCACGCTATTTCAAGGGTTGG
CTTAGGCATAGAGAATTCATTCCATGTCTAAGCCCCAGCTGGACCGAAGGTTATGGCAGCGGGAC
CGACAGCACACAGAGAGCGATCAGACCAATCCTCGGCTTACGCATTATGCCTCTCCGGTCGACTC
AACGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATATCGAGTTCATTCCCAGTCTAAGATCA
GACTGGACCAAGGGTTGCAGCAGCAGGATCGACAACAGGCAGGGGGATCGGGCTGGTCCCCGGCT
TACGCATTCTACCCCTCCGACCAGCTAAACACCCGCACGCTCATTTCATGGGTTGGCTTAGGCAT
ACGGAATGCATTCCATATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAG
GGTTACTGCAGCAAGACCAGTAGCAGGATCGACAGCATGCAGGAGGGATCGGGCCGATCCCTGGC
TTGCATATTCTACCTTTCCAGTCGGCTGAATGCCGGCACGCATTTT
Found at i:23532345 original size:26 final size:26
Alignment explanation
Indices: 23532316--23532368 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23532306 GTTGGCTTAG
23532316 GCATACGGAATTCATTCCCTA-TCTAA
1 GCATACGGAATTCATT-CCTAGTCTAA
* *
23532342 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAATTCATTCCTAGTCTAA
23532368 G
1 G
23532369 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGGAATTCATTCCTAGTCTAA
Found at i:23533050 original size:26 final size:26
Alignment explanation
Indices: 23533011--23533063 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23533001 GTTGACTTAG
23533011 GCATACAGAATTCATCCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
* * *
23533037 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
23533063 G
1 G
23533064 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAGTCTAA
Found at i:23533512 original size:157 final size:158
Alignment explanation
Indices: 23533037--23533535 Score: 451
Period size: 157 Copynumber: 3.2 Consensus size: 158
23533027 CCCAGTCTAA
* * * * * *
23533037 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACTGAGGGTTGCGGTAGCAGGGTCCACA
1 GCATACGGAGTTCATT-CCAGTCTAAGCTCAGACTAGACAGAGGGTTGCGGTAGCAGGATCAACA
* * * * * * *
23533102 ACACGCA-GAGGGGATCGGATC-GAT-CTCGGGCTTGCGCATTCGACCTCTTCGGCTGGCTGAGT
65 GCACGCAGGAGGGGATCGGGTCAG-TCCTC-GGCTTACGCATTCTACCTCTCCGACCGGCTGAGT
* *
23533164 GCCCGCACACCCGTTTCGTGGGTTGGCTTAG
128 GCCCGAACACTCGTTTCGTGGGTTGGCTTAG
** * * * * *
23533195 GCATGGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGATCA-AGGGTTGTGGCAGCGGGA-CTA
1 GCATACGGAGTTCATTCCA-GTCTAAG-CTCAGACTAGA-CAGAGGGTTGCGGTAGCAGGATC-A
* * * * * * * * *
23533257 GCAGCACGCAGAAGGGGATCGAGTCAATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTCAA
62 ACAGCACGCAGGAGGGGATCGGGTCAGTCCTCGGCTTACGCATTCTACCTCTCCGACCGGCTGAG
** * * *
23533322 CACCC-ACACTCTCATTTCGTGGGTT-GATGTAG
127 TGCCCGA-ACACTCGTTTCGTGGGTTGGCT-TAG
23533354 GCATACGGAGTTCATTCCTAGTCTAAG-TCAGACTAGACAGAGGGTTGCGGTAGCAGGATCAACA
1 GCATACGGAGTTCATTCC-AGTCTAAGCTCAGACTAGACAGAGGGTTGCGGTAGCAGGATCAACA
* * * *
23533418 GCACGCAGGA-GGGACCGGGCCAGTCCTCGGCTTACGCATTCTACCTCTCCAACCGACTGAGTGC
65 GCACGCAGGAGGGGATCGGGTCAGTCCTCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGTGC
* *
23533482 CCGAACGCTCGTTTCATGGGTTGGCTTAG
130 CCGAACACTCGTTTCGTGGGTTGGCTTAG
23533511 GCATACGGAGTTCATTCCATGTCTA
1 GCATACGGAGTTCATTCCA-GTCTA
23533536 GGCATACGAA
Statistics
Matches: 263, Mismatches: 62, Indels: 33
0.73 0.17 0.09
Matches are distributed among these distances:
156 1 0.00
157 93 0.35
158 82 0.31
159 84 0.32
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAGTCTAAGCTCAGACTAGACAGAGGGTTGCGGTAGCAGGATCAACAG
CACGCAGGAGGGGATCGGGTCAGTCCTCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGTGCC
CGAACACTCGTTTCGTGGGTTGGCTTAG
Found at i:23533708 original size:184 final size:184
Alignment explanation
Indices: 23533388--23533719 Score: 495
Period size: 184 Copynumber: 1.8 Consensus size: 184
23533378 AAGTCAGACT
* *
23533388 AGACAGAGGGTTGCGGTAGCAGGATCAACAGCACGCAGGAGGGACCGGGCCAGTCCTCGGCTTAC
1 AGACAGAGGGTTGCGGTAGCAGGATCAACAGCACACAGGAGGGACCGGGCCAATCCTCGGCTTAC
* *
23533453 GCATTCTACCTCTCCAACCGACTGAGTGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACG
66 GCATTCTACCTCTCCAACCGACTGAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACA
23533518 GAGTTCATTCCATGTCTAGGCATACGAAGTTCAATCCCAGCCTAAGATTGGATC
131 GAGTTCATTCCATGTCTAGGCATACGAAGTTCAATCCCAGCCTAAGATTGGATC
* * * *
23533572 AGACTGAGGGTTGCGGTAGCAGGATCGATAGCACACAGGAGAGGATCGGGCCAATCCTCGGCTTA
1 AGACAGAGGGTTGCGGTAGCAGGATCAACAGCACACAGGAG-GGACCGGGCCAATCCTCGGCTTA
* * ** * * * * *
23533637 GGCATTCTGCCTCTCCGGCCGACTGAGCGCCTGCACGCTTG-TTCGTGGGTTGGCTTAGGCATAT
65 CGCATTCTACCTCTCCAACCGACTGAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATAC
23533701 AGAGTTCATTCCATGTCTA
130 AGAGTTCATTCCATGTCTA
23533720 AGCCCCAGCC
Statistics
Matches: 130, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
184 76 0.58
185 54 0.42
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (184 bp):
AGACAGAGGGTTGCGGTAGCAGGATCAACAGCACACAGGAGGGACCGGGCCAATCCTCGGCTTAC
GCATTCTACCTCTCCAACCGACTGAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACA
GAGTTCATTCCATGTCTAGGCATACGAAGTTCAATCCCAGCCTAAGATTGGATC
Found at i:23533830 original size:13 final size:13
Alignment explanation
Indices: 23533812--23533836 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23533802 GCTTGCGCAT
23533812 TATGCCTCTTCGA
1 TATGCCTCTTCGA
23533825 TATGCCTCTTCG
1 TATGCCTCTTCG
23533837 GCCGGTTGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.32, G:0.16, T:0.40
Consensus pattern (13 bp):
TATGCCTCTTCGA
Found at i:23533908 original size:26 final size:26
Alignment explanation
Indices: 23533879--23533929 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
23533869 GTTGACTTAG
* *
23533879 GCATACGGAGTTTATCCCCAGTCTAT
1 GCATACAGAGTTCATCCCCAGTCTAT
*
23533905 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
23533930 AGATCGAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAT
Found at i:23534213 original size:159 final size:158
Alignment explanation
Indices: 23533912--23534248 Score: 378
Period size: 159 Copynumber: 2.1 Consensus size: 158
23533902 TATGCATACA
** *
23533912 GAGTTCATTCCCA-GTCTAAGATCGAATCAGACCGAGGGTTGCGGCACTAGGATCGGCAGCACGT
1 GAGTTCATT-CCATGTCTAAGCCCGAATCAGACCGAGGGTTGCGGCACTAGGATCGGCAGCACGC
* * * ** * * *
23533976 AGGGGGGACCGGGCCGATCCTTGGCTTGCGCATTCTACCTCTCCGATCAGTTGAGCGCCCGCACG
65 AGAGGGGACCGAGCAGATCCCCGGCTTGCGCATTCTACCTCTCCGACCAGCTGAACGCCCGCACG
*
23534041 CTCGTTTCATGGGTTGGCTTAGGCATAGG
130 CTAGTTTCATGGGTTGGCTTAGGCATAGG
* * * * * *
23534070 GAGTTCATTCCATGTCTAAGCCCTAGTCAGATCGAGGGTTGTGGCAGC-GGGATCGGCAGCATGC
1 GAGTTCATTCCATGTCTAAGCCCGAATCAGACCGAGGGTTGCGGCA-CTAGGATCGGCAGCACGC
* *
23534134 AGAAGGGGACCGAGCAGATCCCCGGCTTGCGCATTCTGCCTCTCCGACC-GACTGAATGCCCGCA
65 AG-AGGGGACCGAGCAGATCCCCGGCTTGCGCATTCTACCTCTCCGACCAG-CTGAACGCCCGCA
* * *
23534198 GGCTAGTTTCGTGGGTTGGCTTAGGCATATG
128 CGCTAGTTTCATGGGTTGGCTTAGGCATAGG
*
23534229 AAGTAT-ATTCCATGTC-AAGC
1 GAGT-TCATTCCATGTCTAAGC
23534249 ATACCGAGTT
Statistics
Matches: 150, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
157 3 0.02
158 56 0.37
159 90 0.60
160 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCATGTCTAAGCCCGAATCAGACCGAGGGTTGCGGCACTAGGATCGGCAGCACGCA
GAGGGGACCGAGCAGATCCCCGGCTTGCGCATTCTACCTCTCCGACCAGCTGAACGCCCGCACGC
TAGTTTCATGGGTTGGCTTAGGCATAGG
Found at i:23534980 original size:26 final size:26
Alignment explanation
Indices: 23534944--23534996 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23534934 GTTGACTTAG
23534944 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
23534970 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23534996 G
1 G
23534997 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23535387 original size:26 final size:26
Alignment explanation
Indices: 23535339--23535391 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23535329 GTTGACTTAG
*
23535339 GCATACAGAGTTCATCCTTAGTCTAA
1 GCATACAGAGTTCATCCTCAGTCTAA
*
23535365 GCATACGGAGTTCATTCC-CAGTCTAA
1 GCATACAGAGTTCA-TCCTCAGTCTAA
23535391 G
1 G
23535392 ATCTAAGCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCTCAGTCTAA
Found at i:23535712 original size:26 final size:26
Alignment explanation
Indices: 23535682--23535734 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23535672 GTTAGCTTAG
*
23535682 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
23535708 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
23535734 G
1 G
23535735 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:23536415 original size:26 final size:26
Alignment explanation
Indices: 23536386--23536438 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
23536376 GTTGACTTAG
23536386 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23536412 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23536438 G
1 G
23536439 ATCGAACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23536797 original size:159 final size:157
Alignment explanation
Indices: 23536412--23536902 Score: 422
Period size: 159 Copynumber: 3.1 Consensus size: 157
23536402 CCCAGTCTAA
* * * * *
23536412 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGATCGAGGGTTGCGACAGTAGGATCAAC
1 GCATAGGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGTGACAGTAGGATCCAT
* * *
23536476 AGCACGCAGGAGGGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCAGGCTGAGCGC
65 AGCACGCAGGAGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCAGGC-GAGCGC
* * *
23536541 CCGGATGCCCGTTTCATGGGATGGTTTAG
129 CCGCATGCCCATTTCATGGGATGGCTTAG
** * * * *
23536570 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTTTGGCAGTGGGA-CC-
1 GCATAGGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGACAGTAGGATCCA
* * * * *
23536631 TGCAGCACGCA-GAGGGAGATCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGATCGATGC
64 T--AGCACGCAGGA-GG-GACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCG-GC-AGGC
* * *
23536695 -AGTGCCCGCATGCTCATTTCATGGGTTGGCTTAG
123 GAGCGCCCGCATGCCCATTTCATGGGATGGCTTAG
* * *
23536729 GTATAGGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGACAGCAGGATCCATA
1 GCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGTAGGATCCATA
* * ** * * * * * *
23536794 GCACGTAGGGGGGGACTGGGCCGATCCCCGACTTGCACTTTCTACC-CTCTGGCTGGCTGAGCGC
66 GCACGCA-GGAGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCAGGC-GAGCGC
* *** *
23536858 CCGCACGCTTGTTTCATGGGTTGGCTTAG
129 CCGCATGCCCATTTCATGGGATGGCTTAG
*
23536887 GCATACGGAGTTCATT
1 GCATAGGGAGTTCATT
23536903 TCATGTCTAA
Statistics
Matches: 261, Mismatches: 55, Indels: 34
0.75 0.16 0.10
Matches are distributed among these distances:
156 2 0.01
157 7 0.03
158 103 0.39
159 135 0.52
160 9 0.03
161 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGTAGGATCCATA
GCACGCAGGAGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCAGGCGAGCGCCC
GCATGCCCATTTCATGGGATGGCTTAG
Found at i:23536936 original size:26 final size:26
Alignment explanation
Indices: 23536887--23536938 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23536877 GTTGGCTTAG
*
23536887 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
23536913 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
23536939 AAGTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:23538705 original size:26 final size:26
Alignment explanation
Indices: 23538675--23538727 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23538665 GTTGACTTAG
23538675 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
**
23538701 GCATACAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
23538727 G
1 G
23538728 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23538912 original size:184 final size:184
Alignment explanation
Indices: 23538655--23539070 Score: 509
Period size: 184 Copynumber: 2.3 Consensus size: 184
23538645 TCTGCACGCT
* ** * *
23538655 CGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTGC
1 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGCATACAGAGTTCATTCC
* * * ** *
23538719 CAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGTAGGATCAGCAGCACACAGGGCG-GATC-
65 CAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAACAGGATCAGCAGCACACAGGG-GTGACCA
** * * *
23538782 GAACTGATCCCCAACTTGCACATTCTGCCTATTC-GATCGGCTGAGCGCCCACATGCC
129 G-ACCAATCCCCAACTTGCACATTCTGCCTCTCCAG-TCGACTGAGCGCCCACATGCC
*
23538839 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATAC-GAAGTTCTTTCC
1 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACAG-AGTTCATTCC
* *
23538903 CAATCTAAGATTGGACCGGACCGAGGGTTGCGGCAACAGGATCAGCAGCACGCAGGGGTGACCAG
65 CAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAACAGGATCAGCAGCACACAGGGGTGACCAG
* ** * * * *
23538968 GCCAATCCCCGGCTTGCGCATTCTGCCTCTCCAGTTGATTGAGTGCCCACATGCC
130 ACCAATCCCCAACTTGCACATTCTGCCTCTCCAGTCGACTGAGCGCCCACATGCC
*
23539023 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGC
1 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
23539071 CCCAGTCGGA
Statistics
Matches: 200, Mismatches: 27, Indels: 10
0.84 0.11 0.04
Matches are distributed among these distances:
183 5 0.03
184 193 0.96
185 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (184 bp):
CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCC
AATCTAAGATCGGACCGGACCGAGGGTTGCGGCAACAGGATCAGCAGCACACAGGGGTGACCAGA
CCAATCCCCAACTTGCACATTCTGCCTCTCCAGTCGACTGAGCGCCCACATGCC
Found at i:23539201 original size:159 final size:160
Alignment explanation
Indices: 23539025--23539389 Score: 394
Period size: 159 Copynumber: 2.3 Consensus size: 160
23539015 CACATGCCCG
* * * *
23539025 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGTC-GGACCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAGCACCAGACTGGACCGAGGGT
** * * * * * *
23539089 TGTGCCAGCGGGACT-GGCAGCACGCAGAGGGGGACCGGGCCAATCCCCGACTTGCGCATTATGC
66 TGCACCAGCAGGA-TAGACAGCACACAGAGGGGGACCGGGCCAATCCCCAAATTACGCATTATGC
23539153 CTCTCCGGCCAGCTCAGCACCCGCACGCTCA
130 CTCTCCGGCCAGCTCAGCACCCGCACGCTCA
* * * **
23539184 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG-ATCAGACTGGATTGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAGCACCAGACTGGACCGAGGGT
* * * * * *
23539248 TGCATCAGCAGGATAGACAGCACACAGGGGGGGACTGGGTCAATCCCCAAATTATGCATTTTGCC
66 TGCACCAGCAGGATAGACAGCACACAGAGGGGGACCGGGCCAATCCCCAAATTACGCATTATGCC
* * * * * * *
23539313 TCTTCGGTCGGCTGAGCGCCTGCACGCTCG
131 TCTCCGGCCAGCTCAGCACCCGCACGCTCA
* * * *
23539343 TTTCGTGGGTTGGCTTAGGCATACAGAATCCATTCCATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAGCA
23539390 TATGGAGTTC
Statistics
Matches: 167, Mismatches: 36, Indels: 5
0.80 0.17 0.02
Matches are distributed among these distances:
158 5 0.03
159 161 0.96
160 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (160 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAGCACCAGACTGGACCGAGGGT
TGCACCAGCAGGATAGACAGCACACAGAGGGGGACCGGGCCAATCCCCAAATTACGCATTATGCC
TCTCCGGCCAGCTCAGCACCCGCACGCTCA
Found at i:23540404 original size:157 final size:157
Alignment explanation
Indices: 23539980--23540423 Score: 432
Period size: 159 Copynumber: 2.8 Consensus size: 157
23539970 TATGGTAGCG
* * * * *
23539980 GGATCAAAAGCACGCAGGGGGGCCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGGTCGAA
1 GGATCAACAGCACGCAGAGGGACCGGG-CAATCCCCGACTTGTGCATTCTGCCTCTCCGGTCGAC
* * * *
23540045 TGACCACCCACACGCCCG-TTCTATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTGTAAG
65 TGAGCACCCGCACGCTCGTTTC-ATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTGTAAG
* * * * * * *
23540108 CTCTAGCCGGACCGAGGGTTGTCGTAGCC
129 ATCAAACCGGACCAAGGGTTGTCGCAACA
* ** * * * * * * * * *
23540137 GGACCGGCAGCATGTAGAGGTGGACCGAGCTAATCCCTGGCTTGCGTATTATGCCTCTCCGG-CC
1 GGATCAACAGCACGCAGA-G-GGACCGGGC-AATCCCCGACTTGTGCATTCTGCCTCTCCGGTCG
* * * * * *
23540201 AGCTCAGCGCCTGCACGCTCATTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTGTA
63 A-CTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTGTA
23540265 AGATCAAACCGGACCAAGGGTTG-CAGCAACA
127 AGATCAAACCGGACCAAGGGTTGTC-GCAACA
23540296 GGATCAACAGCACGCAGAGGGACCGGGTCAATCCCCGACTTGTGCATTCTGCCTCTCCGGTCGAC
1 GGATCAACAGCACGCAGAGGGACCGGG-CAATCCCCGACTTGTGCATTCTGCCTCTCCGGTCGAC
* * * *
23540361 TGAGCACCCGTATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
65 TGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTGTAAG
23540424 CATACGGAGT
Statistics
Matches: 222, Mismatches: 55, Indels: 20
0.75 0.19 0.07
Matches are distributed among these distances:
156 3 0.01
157 95 0.43
158 9 0.04
159 109 0.49
160 6 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GGATCAACAGCACGCAGAGGGACCGGGCAATCCCCGACTTGTGCATTCTGCCTCTCCGGTCGACT
GAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTGTAAGAT
CAAACCGGACCAAGGGTTGTCGCAACA
Found at i:23540433 original size:26 final size:26
Alignment explanation
Indices: 23540397--23540449 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23540387 GTTGGCTTAG
23540397 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23540423 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23540449 G
1 G
23540450 ATCGTGTCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23541685 original size:26 final size:26
Alignment explanation
Indices: 23541656--23541708 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23541646 GTTGGCTTAG
*
23541656 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGAAGTTCATTTCCA-GTCTAA
23541682 GCATACGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTTCCAGTCTAA
23541708 G
1 G
23541709 ATTTTGAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTTCCAGTCTAA
Found at i:23542400 original size:26 final size:26
Alignment explanation
Indices: 23542356--23542407 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23542346 TTGACTTAGA
*
23542356 CATACAAAGTTCATCCCCAGTCTAAG
1 CATACAAAGTGCATCCCCAGTCTAAG
* *
23542382 CATACGAAGTGCATTCCCAGTCTAAG
1 CATACAAAGTGCATCCCCAGTCTAAG
23542408 ATCGGATTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.29, G:0.15, T:0.23
Consensus pattern (26 bp):
CATACAAAGTGCATCCCCAGTCTAAG
Found at i:23542888 original size:26 final size:26
Alignment explanation
Indices: 23542858--23542910 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23542848 GTTGGCTTAG
23542858 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
23542884 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
23542910 G
1 G
23542911 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:23543261 original size:26 final size:26
Alignment explanation
Indices: 23543225--23543277 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23543215 GTTAACTTAG
* *
23543225 GCATATGGAGTTGATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23543251 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23543277 G
1 G
23543278 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23543553 original size:26 final size:26
Alignment explanation
Indices: 23543523--23543575 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23543513 GTTAACTTAG
*
23543523 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
23543549 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23543575 G
1 G
23543576 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23543752 original size:298 final size:298
Alignment explanation
Indices: 23543190--23543775 Score: 759
Period size: 298 Copynumber: 2.0 Consensus size: 298
23543180 TTGGCCGACA
* * *
23543190 GAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATATGGAGTTGATCCCCAGTCTAAGCAT
1 GAGCACCCGCACACTCGTTTCATGGGTTAACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCAT
* * * ** * *
23543255 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGTTTACGGTAGTAGGATCGATAGCAC
66 ACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCAAGGGTTACGACAGCAGGATCGACAGCAC
* * * ** *
23543320 GCAGGGTGGACCGGATCGATCCCTGGCTCACACATTCTGCCTCTCTGGTCGGTTGAGCACCCGCA
131 GCAGGGGGGACCGGACCGATCCCTGACTCACACATTCAACCTCTCTGGTCGGCTGAGCACCCGCA
* * * * * *
23543385 TGCTCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCAATTCTATGCCTCAGCCGGACCG
196 CGCCCATTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCAATTCTAAGCCCCAGCCAGACCG
* *
23543450 AGGGTTGTGGCAGTGGGACCGACAGCACGCAGAGGGTT
261 AGGGTTATGGCAGCGGGACCGACAGCACGCAGAGGGTT
23543488 GAGCACCCGCACACTCGTTTCATGGGTTAACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCAT
1 GAGCACCCGCACACTCGTTTCATGGGTTAACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCAT
* * **
23543553 ACGGAGTTCATTCCCAGTGTAAGATCGGATCAGG-CCAAGGGTTGTGACAGCAGGATCGACAGCA
66 ACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGACCAAGGGTTACGACAGCAGGATCGACAGCA
* ** *
23543617 TGCAGGGGGGACCCGG-CCGATTCCC-GACTTGCGCATTCAACCTCT-TCGGTCGGCTGAGCACC
130 CGCAGGGGGGA-CCGGACCGA-TCCCTGACTCACACATTCAACCTCTCT-GGTCGGCTGAGCACC
* * *
23543679 CGTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCC-ATGTCTAAGCCCCAGTCA
192 CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCAAT-TCTAAGCCCCAGCCA
* *
23543743 GATCGAGGGTTATGGCAGCGGGACCGGCAGCAC
256 GACCGAGGGTTATGGCAGCGGGACCGACAGCAC
23543776 ATAGAGGGGG
Statistics
Matches: 246, Mismatches: 37, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
297 3 0.01
298 232 0.94
299 11 0.04
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (298 bp):
GAGCACCCGCACACTCGTTTCATGGGTTAACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCAAGGGTTACGACAGCAGGATCGACAGCAC
GCAGGGGGGACCGGACCGATCCCTGACTCACACATTCAACCTCTCTGGTCGGCTGAGCACCCGCA
CGCCCATTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCAATTCTAAGCCCCAGCCAGACCG
AGGGTTATGGCAGCGGGACCGACAGCACGCAGAGGGTT
Found at i:23544028 original size:158 final size:157
Alignment explanation
Indices: 23543549--23544050 Score: 510
Period size: 158 Copynumber: 3.2 Consensus size: 157
23543539 CCCAGTCTAA
* * * * *
23543549 GCATACGGAGTTCATTCCCA-GTGTAAGATCGGATCAGGC-CAAGGGTTGTGACAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCAGACTGAA-GGTTGTGGCAGCAGGATCGA
*** * ** *
23543612 CAGCATGCAGGGGGGACCCGGCCGATTCCCGACTTGCGCATTCAACCTCTTCGGTCGGCTGAGCA
64 CAGCACATAGGGGGGACCCGGCCGA-TCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCG
* * * *
23543677 CCCGTACGCCCATTTCATGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * *
23543707 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGA-TCGAGGGTTATGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCAGACT-GAAGGTTGTGGCAGCAGGATCGA
* * * * * * *
23543770 CAGCACATAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGACTCAGG
64 CAGCACATAG-GGGGGACCCGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGC
* * *
23543835 GCCCGCATGCTCGTTTCGTGGGTTGACTTAT
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
23543866 GCATATGGAGTTCATT-CATAGTCTAAGATCAGATCAGACTGAAGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGATCAGACTGAAGGTTGTGGCAGCAGGATCGAC
* * * * * *
23543930 AGCACATAGGGGGAACCTGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGGCCGGTTGAGCGC
65 AGCACATAGGGGGGACCCGGCCGATCC-CGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGC
*
23543995 CCACACGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
23544024 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
23544051 CATACGGAGC
Statistics
Matches: 274, Mismatches: 59, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 5 0.02
158 142 0.52
159 126 0.46
160 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCAGACTGAAGGTTGTGGCAGCAGGATCGACA
GCACATAGGGGGGACCCGGCCGATCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:23544064 original size:26 final size:26
Alignment explanation
Indices: 23544024--23544076 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23544014 GTTGGCTTAG
*
23544024 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
23544050 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
23544076 G
1 G
23544077 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Done.