Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 234 of 402
Found at i:23545805 original size:26 final size:26
Alignment explanation
Indices: 23545775--23545834 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
23545765 GTTGGCTTAG
23545775 GCATACAGACTTCATT-CCATGTCTAA
1 GCATACAGACTTCATTCCCA-GTCTAA
**
23545801 GCATATGGACTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
23545827 G-AT-CAGAC
1 GCATACAGAC
23545835 CGAACTGAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 3 0.10
25 2 0.07
26 21 0.72
27 3 0.10
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAGTCTAA
Found at i:23546172 original size:158 final size:156
Alignment explanation
Indices: 23545882--23546341 Score: 485
Period size: 158 Copynumber: 2.9 Consensus size: 156
23545872 TCAGCAGCAC
* * * *
23545882 GCAGGGGGGACCAGGCCGATCCTCGACTTACGCATTCTACCTCTCCGGCCGGCTGAGCGCCTGCA
1 GCAGGAGGGACC-GGCCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGGCTAAGCGCCCGCA
* * * * * *
23545947 CCCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGCCTAAGATC-GAACCAGACC
65 CGCTCATTTTGT-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCAGATC
* *
23546011 GAGGGTTGTGGCAGCAAGATCGACAGCAT
128 GAGGGTTGTGGCAGCAAGATCGACAACAA
* * * * *** *
23546040 GTAGGAGGGACCGGACCGATCCCCGACTTGCTCATTCTGCCTCTCCGATTGGCTCAGCGCCCGCA
1 GCAGGAGGGACCGG-CCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGGCTAAGCGCCCGCA
*
23546105 CGCTCATTTTGTGGTTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGATCG
65 CGCTCATTTTGTGG-TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCG
* * * *
23546170 AGGGTTATGGTAGTAGGATCGACAACAA
129 AGGGTTGTGGCAGCAAGATCGACAACAA
* * * * * * *
23546198 GCAGGAGGGACTGGGCTGGTCCCCGGCTTACGCATTCTACCTTTTCGGCCAGCTAAGCGCCCGCA
1 GCAGGAGGGAC-CGGCCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGGCTAAGCGCCCGCA
* * * * *
23546263 CGCTCGTTTCGTGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCTCAG-TCCGATC
65 CGCTCATTTTGTGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGATC
*
23546326 GAGCGTTGTGGCAGCA
128 GAGGGTTGTGGCAGCA
23546342 GGACCGGCAG
Statistics
Matches: 247, Mismatches: 49, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
156 3 0.01
157 52 0.21
158 189 0.77
159 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (156 bp):
GCAGGAGGGACCGGCCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGGCTAAGCGCCCGCAC
GCTCATTTTGTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAG
GGTTGTGGCAGCAAGATCGACAACAA
Found at i:23546491 original size:26 final size:26
Alignment explanation
Indices: 23546457--23546509 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23546447 GTTGACATAG
23546457 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
23546483 GCATGCAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
23546509 G
1 G
23546510 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23547050 original size:369 final size:363
Alignment explanation
Indices: 23546256--23547076 Score: 874
Period size: 368 Copynumber: 2.2 Consensus size: 363
23546246 CCAGCTAAGC
* *
23546256 GCCCGCACGCTCGTTTCGT-GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAGT
1 GCCCGCACGCTCGTTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCACAGT
* * * * *
23546320 CCGATCGAGCGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCATGCAGAGGGGGATCGGGTT
66 -CGATCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGACAGCACGCAGAGGGGGATCGAGCT
* * * ** * *
23546385 GATCCCTAGCTTGTGCATTTTGCCTCTCCGGTCGGCTAAGCGCCTGCACGCTCGTTTCATGGGTT
130 AATCCCCAGCTTGCGCATTAGGCCTCTCCGATCGGCTAAGCGCCTGCACGCTCATTTCATGGGTT
* *
23546450 GACATAGGCATACAGAGTTCATCCCCAGTCTAAGCATGCAGAGTTCATTCCTAGTCTAAGATCGA
195 GACATAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGA
* *
23546515 ACCAGATCGAGGGTTACAGCAGTAGGACCAGTAGCAGGATCGACAGCATGTAAGAGGGGACCAGA
260 ACCAGAGCGAGGGTTACAGCAGCAGGACCAG-AGCAGGA-CGACAGCATG--AGAGGGGACCAGA
* * *
23546580 CCGATCCTTGGCTTGCGCATTCTGCCTCTCTGACTGGCTGAGT
321 CCGATCCTCGGCTTGCGAATTCTGCCTCTCCGACTGGCTGAGT
* ** *
23546623 GCCCGCACGCTCGTTTCGTGGG-TTGACCTAGGTGTACGGAGTTCATTCCATGTCTAAGCCCCAG
1 GCCCGCACGCTCGTTTCGTGGGTTTG-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCACAG
* * * *
23546687 TCAGACCGAGGGTTATGGCAGCAGGACCGATAGTGGGATCGACAGCACGCAGAGGGGGATCGAGC
65 TC-GATCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGACAGCACGCAGAGGGGGATCGAGC
* ** *
23546752 TAATCCCCGGCTTGCGCATTAGGCCTCTCCGATCGGCCTCTCCTACCGGTTGAGCGTTTGCATGC
129 TAATCCCCAGCTTGCGCATTAGGCCTCTCCGATCGG------CTA-------AGCGCCTGCACGC
* * * * *
23546817 TCATTTCGTGGGTTGACTTGGGCATACGGAGTTCATCCCCCAGTCTAAGCATACGGAGTTCATTC
181 TCATTTCATGGGTTGACATAGGCATACAGAGTTCAT-CCCCAGTCTAAGCATACAGAGTTCATTC
* * * * * *
23546882 CCAGTTTAAGATTGGACCAGAGCGAGGGTTGCAGCAGCAGGATC-G-G-TGG-C-AC-GCA-G-G
245 CCAGTCTAAGATCGAACCAGAGCGAGGGTTACAGCAGCAGGACCAGAGCAGGACGACAGCATGAG
* * *
23546939 A-GGGACCGGGCCGATCCTCGGCTTGTGAATTCTGCCTCTCCGA-TCGGCTGAGT
310 AGGGGACCAGACCGATCCTCGGCTTGCGAATTCTGCCTCTCCGACT-GGCTGAGT
* * * ** *
23546992 GCCCGCACGCCCATTTCATGGGTTTGCTTAAACATAGGGAGTTCATTCCATGTCTAAGCCACAGT
1 GCCCGCACGCTCGTTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCACAGT
23547057 CGAATCGAGGGTTGTGGCAG
66 CG-ATCGAGGGTTGTGGCAG
23547077 TGAGACCAAT
Statistics
Matches: 376, Mismatches: 58, Indels: 38
0.80 0.12 0.08
Matches are distributed among these distances:
367 22 0.06
368 121 0.32
369 111 0.30
370 5 0.01
373 1 0.00
374 6 0.02
375 2 0.01
376 1 0.00
378 2 0.01
379 1 0.00
381 42 0.11
382 62 0.16
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (363 bp):
GCCCGCACGCTCGTTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCACAGT
CGATCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGACAGCACGCAGAGGGGGATCGAGCTA
ATCCCCAGCTTGCGCATTAGGCCTCTCCGATCGGCTAAGCGCCTGCACGCTCATTTCATGGGTTG
ACATAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAA
CCAGAGCGAGGGTTACAGCAGCAGGACCAGAGCAGGACGACAGCATGAGAGGGGACCAGACCGAT
CCTCGGCTTGCGAATTCTGCCTCTCCGACTGGCTGAGT
Found at i:23547331 original size:158 final size:157
Alignment explanation
Indices: 23546865--23547366 Score: 435
Period size: 158 Copynumber: 3.2 Consensus size: 157
23546855 CCCAGTCTAA
* * * * * *
23546865 GCATACGGAGTTCATTCCCA-GTTTAAGATTGGACCAGAGCGAGGGTTGC-AGCAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCAGACCGAGGGTTGCGA-CAGTAGGATCGA
* * * * ** **
23546928 TGGCACGCAGGAGGGACCGGGCCGATCCTCGGCTTGTGAATTCTGCCTCTCCGATCGGCTGAGTG
64 TAGCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCA
* * *
23546993 CCCGCACGCCCATTTCATGGGTTTGCTTAA
129 CCCGAACGCTCATTTCATGGG-TTGCTTAG
* * * * * * *
23547023 ACATAGGGAGTTCATTCCATGTCTAAGCCA-CAG-TC-GAATCGAGGGTTGTGGCAGT-GAGACC
1 GCATACGGAGTTCATTCCATGTCTAAG--ATCGGATCAG-ACCGAGGGTTGCGACAGTAG-GATC
* * * * * * * *
23547084 AATAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTACGCATTATCCCTCTTCGGCTGGCTCA
62 GATAGCACGCAG-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGA
* * *
23547149 GCATCCGAACCCTCATTTCGTGGGTTGACTTAG
126 GCACCCGAACGCTCATTTCATGGGTTG-CTTAG
* * *
23547182 GGATACGGAGTTCATTCC-TAGTCTAAGATCGGATCAGACCGAGGGTTGCGATAGTAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGGATCAGACCGAGGGTTGCGACAGTAGGATCGAT
* * * * *
23547246 AGCATGCAGGGGGGACCGGGCCTATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCAC
65 AGCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCAC
*
23547311 CCGTACGCTCATTTCATGGGTTGGCTTAG
130 CCGAACGCTCATTTCATGGGTT-GCTTAG
*
23547340 GCAT-CTAGAGTTCATTCCATGTCTAAG
1 GCATAC-GGAGTTCATTCCATGTCTAAG
23547367 CATACAGAGT
Statistics
Matches: 265, Mismatches: 63, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
157 7 0.03
158 141 0.53
159 114 0.43
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGTAGGATCGATA
GCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACC
CGAACGCTCATTTCATGGGTTGCTTAG
Found at i:23547512 original size:184 final size:182
Alignment explanation
Indices: 23547184--23547551 Score: 463
Period size: 184 Copynumber: 2.0 Consensus size: 182
23547174 TGACTTAGGG
* * * *
23547184 ATACGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGCGATAGTAGGATCGACAGC
1 ATACAGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGC
* *
23547249 ATGCAGGGGGGACCGGGCCTATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCACCCG
66 ACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGTTGAG-ACCCG
* *
23547314 TACGCTCATTTCATGGGTTGGCTTAGG-CATCTAGAGTTCATTCCATGTCTAAGC
130 CACGCTCATTTCATGGGTCGGCTTAGGACA-C-AGAGTTCATTCCATGTCTAAGC
* ** * *
23547368 ATACAGAGTTCATTCCTAGTCTAAGATCGGACCGGATTGATGGTTGCGACAGCAGGATTGACAGC
1 ATACAGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGC
* * * * * *
23547433 ACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTTCCTCTTCGGCTGGCCTCT-TG-CC
66 ACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGG--T-TGAGACC
* *
23547496 CGCACGCTCGTTTCATGGGTCGGCTTAGGTACACAGAGTTTATTCCATGTCTAAGC
128 CGCACGCTCATTTCATGGGTCGGCTTAGG-ACACAGAGTTCATTCCATGTCTAAGC
23547552 CCCAGCCAGA
Statistics
Matches: 158, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
184 152 0.96
185 1 0.01
186 4 0.03
187 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.26
Consensus pattern (182 bp):
ATACAGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGC
ACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGTTGAGACCCGC
ACGCTCATTTCATGGGTCGGCTTAGGACACAGAGTTCATTCCATGTCTAAGC
Found at i:23547834 original size:159 final size:159
Alignment explanation
Indices: 23547427--23547868 Score: 512
Period size: 159 Copynumber: 2.8 Consensus size: 159
23547417 CAGCAGGATT
* * * * *
23547427 GACAGCACGC-AGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTTCCTCTTCGGCTGGCCTC
1 GACAGCACGCAAAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATTCCTCTTCGGTTGG-CTC
** * * * * *
23547491 -TTGCCCGCACGCTCGTTTCATGGGTCGGCTTAGGTACACAGAGTTTATTCCATGTCTAAGCCCC
65 AGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCCCC
*
23547555 AGCCAGACCGAGGGTTGTCACAATGGGATC
130 AGCCAGACCGAGGGTTGTCACAATGGGACC
* * * * * *
23547585 GACAGCACGTAGAGGGGGACCGAGTTGATCCCCGGCTTGTGCATTATGCCTCTTCGGTTGGCTCA
1 GACAGCACGCAAAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATTCCTCTTCGGTTGGCTCA
* * * ** * *
23547650 GCACCCGTACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
66 GCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCCCCA
* * ** *
23547715 GTCAGACTGAGGGTTGTGGCAGTGGGACC
131 GCCAGACCGAGGGTTGTCACAATGGGACC
* *
23547744 GACAGCACGCAAAAGGGGACCGGGTCGATCCCCGGCTTACGCATTATTCCTCTTCGGTTGGCTCA
1 GACAGCACGCAAAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATTCCTCTTCGGTTGGCTCA
* * * *
23547809 GCGCCCGAACGCTCATTTCATGGGTTGACCTAGGCATACGAAGTTTATTCCCA-GTCTAAG
66 GCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATT-CCATGTCTAAG
23547869 ATTGGACCGA
Statistics
Matches: 232, Mismatches: 49, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
158 12 0.05
159 217 0.94
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
GACAGCACGCAAAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATTCCTCTTCGGTTGGCTCA
GCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCCCCA
GCCAGACCGAGGGTTGTCACAATGGGACC
Found at i:23549475 original size:159 final size:157
Alignment explanation
Indices: 23549120--23549615 Score: 444
Period size: 159 Copynumber: 3.1 Consensus size: 157
23549110 CTAAGCCTAT
* * ** * *
23549120 GGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTCACGGCAGTAGGATCGACAGCACGC
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCTGCAGGATCGACAGCACGC
* * ** * * * *
23549185 -AGGGGGACTGGGTCGGTCCCCGGCTTGTTCATTCTGCTTCTCTGGCCGGTTGAGCACCCGTACG
66 AAGGGGGACCGGGTCGATCCCCGGCTTGCCCATTCTGCCTCTCCGGCC-GCTGAGCACCCGCACG
* *
23549249 CCCGTTTCATGGGTTGGCTTAGGCATAG
130 CTCGTTTCATGGGTTGGCTTAGGCATAC
** ** * * * * *
23549277 GGCTTTCATT-CCATGTCTAAGCCCCAG-CTGGACCAAGGGTTGTGGCTGCGGGACCGACAGCAC
1 GGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCTGCAGGATCGACAGCAC
* * *
23549340 GCAAAGGGGGACCGGGTCGATCCCCGGCTTGCCCATTATGCCTCTCCGGCCAGCTCAGCACTCGC
64 GC-AAGGGGGACCGGGTCGATCCCCGGCTTGCCCATTCTGCCTCTCCGGCC-GCTGAGCACCCGC
* *
23549405 ACGCTCGTTTCATGGGTTGACTTATGCATAC
127 ACGCTCGTTTCATGGGTTGGCTTAGGCATAC
* * * * * * *
23549436 GGAGTTCATTCCCAGCCTAAGATCGGACCAGACCGAGGGTTGCAG-TAGCAAGATTGACAACACG
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCT-GCAGGATCGACAGCACG
* * * * * * *
23549500 CAAGGGTGGACCAGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCA
65 CAAGGG-GGACCGGGTCGATCCCCGGCTTGCCCATTCTGCCTCTCCGGCCG-CTGAGCACCCGCA
* * **
23549565 CACTCATTTTGTGGGTTGGCTTAGGCATAC
128 CGCTCGTTTCATGGGTTGGCTTAGGCATAC
23549595 GGAGTTCATT-CCACGTCTAAG
1 GGAGTTCATTCCCA-GTCTAAG
23549616 CATACAGAGT
Statistics
Matches: 265, Mismatches: 64, Indels: 18
0.76 0.18 0.05
Matches are distributed among these distances:
156 3 0.01
157 42 0.16
158 15 0.06
159 202 0.76
160 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (157 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCTGCAGGATCGACAGCACGC
AAGGGGGACCGGGTCGATCCCCGGCTTGCCCATTCTGCCTCTCCGGCCGCTGAGCACCCGCACGC
TCGTTTCATGGGTTGGCTTAGGCATAC
Found at i:23549625 original size:26 final size:26
Alignment explanation
Indices: 23549589--23549641 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23549579 GTTGGCTTAG
*
23549589 GCATACGGAGTTCA-TTCCACGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
23549615 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
23549641 G
1 G
23549642 ATTTTCAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:23550818 original size:26 final size:26
Alignment explanation
Indices: 23550768--23550820 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23550758 GTTGGCTTAG
*
23550768 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATCTCTAA
23550794 GCATACGGAGTTCATTCCCA-CTCTAA
1 GCATACGGAGTTCATT-CCATCTCTAA
23550820 G
1 G
23550821 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATCTCTAA
Found at i:23552405 original size:26 final size:26
Alignment explanation
Indices: 23552375--23552441 Score: 98
Period size: 26 Copynumber: 2.6 Consensus size: 26
23552365 GTTGACTTAG
23552375 GCATACAGAGTTCATCCCCAGTATAA
1 GCATACAGAGTTCATCCCCAGTATAA
* *
23552401 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTATAA
* *
23552427 GTATATAGAGTTCAT
1 GCATACAGAGTTCAT
23552442 TCGCAGTCTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTATAA
Found at i:23552449 original size:26 final size:26
Alignment explanation
Indices: 23552375--23552453 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 26
23552365 GTTGACTTAG
* *
23552375 GCATACAGAGTTCATCCCCAGTATAA
1 GCATACAGAGTTCATTCCCAGTCTAA
23552401 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
* * *
23552427 GTATATAGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
23552453 G
1 G
23552454 ATCAGATCGG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
25 3 0.07
26 40 0.87
27 3 0.07
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:23552842 original size:158 final size:159
Alignment explanation
Indices: 23552565--23552924 Score: 374
Period size: 158 Copynumber: 2.3 Consensus size: 159
23552555 CGCCTGTTTT
* * **
23552565 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGG
1 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACTGAGGGTTGCAG
* **
23552630 CAGCTGGACCGACAGCATGCAGAGGGAGACCGGGCTGATCCCCAGCTTGTGCATTATACATCT-C
66 CAGCAGGACCGACAGCATGCAGAGGGAGACCGGGCTGATCCCCAGCTTACGCATTATACATCTCC
* *
23552694 GACCGGCTCAGTGCCCGTAC-GCTCATTTC
131 GACCGGCTCAATGCCCGTACAAC-CATTTC
* * * * *
23552723 GTGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGA-TCGAGGGTTG
1 ATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCAGACT-GAGGGTTG
* * * * ** * * *
23552785 CAGTAGCAGGATCGACAGCATGCAG-GGAGGGACTGGGCCTG-TCCCTGGCTTACGCATTCTGCC
63 CAGCAGCAGGACCGACAGCATGCAGAGG-GAGACCGGG-CTGATCCCCAGCTTACGCATTATACA
* * *
23552848 TCTCCGACCGGCTGAATGCCCGTGCAACCGTTTC
126 TCTCCGACCGGCTCAATGCCCGTACAACCATTTC
*
23552882 ATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
1 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
23552925 TACGGAGTTC
Statistics
Matches: 164, Mismatches: 29, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
157 6 0.04
158 94 0.57
159 62 0.38
160 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACTGAGGGTTGCAG
CAGCAGGACCGACAGCATGCAGAGGGAGACCGGGCTGATCCCCAGCTTACGCATTATACATCTCC
GACCGGCTCAATGCCCGTACAACCATTTC
Found at i:23552926 original size:26 final size:26
Alignment explanation
Indices: 23552896--23552948 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23552886 GTTGGCTTAG
23552896 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
23552922 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
23552948 G
1 G
23552949 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:23553314 original size:26 final size:26
Alignment explanation
Indices: 23553274--23553326 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23553264 GTTGACTTAG
23553274 GCATACAGAGATCATCCCCAGTCTAA
1 GCATACAGAGATCATCCCCAGTCTAA
* *
23553300 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGATCATCCCCAGTCTAA
23553326 G
1 G
23553327 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGATCATCCCCAGTCTAA
Found at i:23554233 original size:26 final size:26
Alignment explanation
Indices: 23554197--23554249 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23554187 GTTGGCTTAG
*
23554197 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23554223 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23554249 G
1 G
23554250 ATTTGAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23555002 original size:911 final size:896
Alignment explanation
Indices: 23553223--23554934 Score: 2040
Period size: 911 Copynumber: 1.9 Consensus size: 896
23553213 TCTTCGATCG
* * * * * * *
23553223 GCCTTTCCGACCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGATCA
1 GCCTTTCCGGCTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
* *
23553288 TCCCCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGATGCACATGCTG
66 T-TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGATGCACAAGCTG
* * * *
23553352 GGCTCTAGCATGTGCTGGTGCCGTATTTTTTTTGCCCGAGGCACCATCGTCGGAGCATTATCGGA
130 GGCTCGAGCATGTGCTGGTGCCGCATGTTTTTTGCCAGAGGCACCATCGTC---GC--TA-C-GA
* ** *
23553417 GCATCGTTGGAGAGCCTAACAGACGGCATTGGGGGTTCCGGTGATTGGAGAGGCCGGGGGGGTGT
188 GCATCGTCGGAGAGCCTAACAGACGGCATTGGGGGTTCCGACGATTGGAGAGGCCGGAGGGGTGT
**
23553482 GCGTACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTAGCTCCCTATCCCTCATCAAA
253 GCACACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTAGCTCCCTATCCCTCATCAAA
** *
23553547 CCTTGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTATAGGTTTGCTGCCAGCAGCCATT
318 CCTCAAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTATAGGTTTGCTACCAGCAGCCATT
23553612 AAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTTGAGTTTTTA
383 AAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTTGAGTTTTTA
* * *
23553677 GCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGACACCTCTACCAAATTTGGGGACAAAAC
448 GCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGACACCTCGACCAAATTTGGGGACAAAAC
* * *
23553742 TCTTTCTAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
513 TCTTTCTAAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTACAAAAATCATGAAAAATAGAA
* * * * **
23553807 AACGGGTCGTCTTGCCATGAAACTTCACATGAAGTCTGAGTGCCAGCACGCCCATTCCGTGGGTT
578 AACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTGAGTG-C-G--CGACCATTCCATGAATT
* * *** * * * *
23553872 GACTTAGGCATAGGGAGTCCATTCCATGTCTAAGCGCCAACTGGATGGAGGGTTGTGGCAGCGGG
639 GACTAAGCCATAAAAAGTCCATTCCATGAC-AA-CG-CAAAT-GATGGAGAGATGT-G--GCGGG
* ** * * * *
23553937 ACTGACAACACATTGAGGGGGATCGGGCCGATGCCCGACTTGCGCATTATGCCTCTTCGGCCTGC
697 AC--ACAACACACTGA--GCCATCCGGCCGATCCCCGACTTACGCATCATGCCTCTTCGGCCTGC
* * * * *
23554002 TCAGCGCCCGTACGCTCGTTTCATGGGTTGACTTATGCATACAGAGTTCATTTCCAATCTAAGAT
758 TCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTTCAAATATAAGAT
*
23554067 CAGATGAGACTGAGGGCTGCAGTAGCAAGATCGATAGCACACGGGGAGGGACCGGGCCGATCCCC
823 CAGATGAGACTGAGGGCTGCAGTAG---GATCGATAGCACAC-GGGA-GGACCGAGCCGATCCCC
*
23554132 GACTTGCGCATTCT
883 GACTTACGCATTCT
*
23554146 GCCTTTCCGGCTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCA
1 GCCTTTCCGGCTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
* * *
23554211 TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TTTGAAGCCACGGTGTACAAGCTG
66 TTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTTTG-AGCCACGATGCACAAGCTG
* * *
23554275 GGCTCGGGCATGTGCTGGTGCTGCATGTTTTTTGCTTAG-GGCACCATCG-C-C-A-GAGCATCG
130 GGCTCGAGCATGTGCTGGTGCCGCATGTTTTTTGC-CAGAGGCACCATCGTCGCTACGAGCATCG
* * * * *
23554335 TCGGAGAGCCTAACCGGCGGTATTGGGGGTTCCGACGATTGGGGGGGCC-GAGGGGTGTGCACAC
194 TCGGAGAGCCTAACAGACGGCATTGGGGGTTCCGACGATTGGAGAGGCCGGAGGGGTGTGCACAC
* *
23554399 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CACCTATCCCTCATCAAACCTCA
259 ATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTAGCTC-CCTATCCCTCATCAAACCTCA
* *
23554463 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGT
323 AGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTATAGGTTTGCTACCAGCAGCCATTAAAGT
*
23554528 GTCTGAAATGGGGACACTTTTTTCAAACGGTCAGAAAATCTTCTCCACTTTGAGTTTTTAGCTGA
388 GTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTTGAGTTTTTAGCTGA
*
23554593 ATTCTTTTGTGCATGCCAACAAAAATATAAGGATCACCTCGACCAAATTTGGGGACAAAACTCTT
453 ATTCTTTTGTGCATGCCAACAAAAATACAAGGA-CACCTCGACCAAATTTGGGGACAAAACTCTT
*
23554658 TCTAAAAAAATTTTAAAAAATCCCGAACAGTAAAAAGTTACAAAAATCATGAAAAATAGAAAACG
517 TCTAAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTACAAAAATCATGAAAAATAGAAAACG
* * ** *
23554723 GGTCTTCTTGCCACGAAACTTCACATGAAGGCTTAG-G-G-GACCATTGTATGAATTTAC-AAGC
582 GGTCGTCTTGCCACGAAACTTCACATGAAGGCTGAGTGCGCGACCATTCCATGAATTGACTAAGC
* * ** *
23554784 CATAAAAA-TGGCATTGGCATGAC-A-G-AAAT-AT-GA-AGATGT-GCTTGA-AC-CCAC-CT-
647 CATAAAAAGT-CCATT-CCATGACAACGCAAATGATGGAGAGATGTGGCGGGACACAACACACTG
*** * * * * * * *
23554837 A-CCATCCTTTCGATCCCCGGCTTACGTATCCTGCCTC-TCTGG-TTGGCTGAGTGCCCGCACGT
710 AGCCATCCGGCCGATCCCCGACTTACGCATCATGCCTCTTC-GGCCT-GCTCAGCGCCCGCACGC
23554899 TCATTTCATGGGTTGACTTAGGCATACAGAGTTCAT
773 TCATTTCATGGGTTGACTTAGGCATACAGAGTTCAT
23554935 CCCCATTCTA
Statistics
Matches: 688, Mismatches: 92, Indels: 59
0.82 0.11 0.07
Matches are distributed among these distances:
881 3 0.00
882 73 0.11
885 1 0.00
886 1 0.00
887 3 0.00
888 2 0.00
891 4 0.01
895 4 0.01
896 2 0.00
897 2 0.00
899 3 0.00
901 1 0.00
903 2 0.00
904 11 0.02
905 17 0.02
908 1 0.00
910 1 0.00
911 227 0.33
912 172 0.25
915 1 0.00
918 1 0.00
922 8 0.01
923 147 0.21
924 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.27
Consensus pattern (896 bp):
GCCTTTCCGGCTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
TTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGATGCACAAGCTGG
GCTCGAGCATGTGCTGGTGCCGCATGTTTTTTGCCAGAGGCACCATCGTCGCTACGAGCATCGTC
GGAGAGCCTAACAGACGGCATTGGGGGTTCCGACGATTGGAGAGGCCGGAGGGGTGTGCACACAT
GATGTACGATGGGTGCTGGTACTTGGCCCTTATATTAGCTCCCTATCCCTCATCAAACCTCAAGA
ACTCACACCCCCTTAAAGAGAATTTGAGATTTTATAGGTTTGCTACCAGCAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATT
CTTTTGTGCATGCCAACAAAAATACAAGGACACCTCGACCAAATTTGGGGACAAAACTCTTTCTA
AAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTACAAAAATCATGAAAAATAGAAAACGGGTC
GTCTTGCCACGAAACTTCACATGAAGGCTGAGTGCGCGACCATTCCATGAATTGACTAAGCCATA
AAAAGTCCATTCCATGACAACGCAAATGATGGAGAGATGTGGCGGGACACAACACACTGAGCCAT
CCGGCCGATCCCCGACTTACGCATCATGCCTCTTCGGCCTGCTCAGCGCCCGCACGCTCATTTCA
TGGGTTGACTTAGGCATACAGAGTTCATTTCAAATATAAGATCAGATGAGACTGAGGGCTGCAGT
AGGATCGATAGCACACGGGAGGACCGAGCCGATCCCCGACTTACGCATTCT
Found at i:23555812 original size:26 final size:26
Alignment explanation
Indices: 23555782--23555834 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23555772 GTTGACTTAG
23555782 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
23555808 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23555834 G
1 G
23555835 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23556170 original size:159 final size:157
Alignment explanation
Indices: 23555808--23556189 Score: 457
Period size: 159 Copynumber: 2.4 Consensus size: 157
23555798 CCTAGTCTAA
* **
23555808 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTATGACAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGACAGCAGGATCGACA
* * * * * *
23555873 GCTCATAGGGGGATCGGGCTGATCCTCGACTTGCGCATTCTGCCTCTCCGGCAGGCTGAGCACCC
66 GCACATAGGGGGACCAGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGGCAGGCTCAGCACCC
*
23555938 GCACGCCCATTTCGTGGGTTGACTTAG
131 GCACGCCCATTTCATGGGTTGACTTAG
* * * * * *
23555965 GCATAGGGAGTTCATT-CCATGTCTAAG-CCGCAGCCAGATCGAGGGTTGTGGCAGCAGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCG-AACCGGACCGAGGGTTGTGACAGCAGGATC-G
23556027 ACAGCACATAGTAGGGGACCAGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGGCTA-GCTCA
63 ACAGCACATAG--GGGGACCAGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGGC-AGGCTCA
* * *
23556091 GCACCTGCACGCTCGTTTCATGGGTTGACTTAG
125 GCACCCGCACGCCCATTTCATGGGTTGACTTAG
* * * * * *
23556124 GCATACGGTGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGACAGCAGGATCGACA
23556189 G
66 G
23556190 AACGCAGGGG
Statistics
Matches: 185, Mismatches: 31, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
156 6 0.03
157 54 0.29
159 118 0.64
160 7 0.04
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGACAGCAGGATCGACA
GCACATAGGGGGACCAGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGGCAGGCTCAGCACCC
GCACGCCCATTTCATGGGTTGACTTAG
Found at i:23556816 original size:159 final size:157
Alignment explanation
Indices: 23556467--23556837 Score: 368
Period size: 159 Copynumber: 2.3 Consensus size: 157
23556457 AAGCATATGA
* *
23556467 AGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTATGGCAGCAGGATCGGTAGCACGCAG
1 AGTTCATT-CCAGTCTAAAATCAGACCAGACCGAGGGTTATGGCAGCAGGATCGGTAGCACGCAG
* * * * * * *
23556532 GGGGGACCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCTGACCGGCTGAGTGCCCGCACACC
65 AGGGGACCAGACCAATCCCCGGCTTGCACATTATGCCTCTCCGACCGGCTCAATGCCCGCACACC
* * * *
23556597 TGTTTCGTGGGTTGGCTTAGGCATAGGG
130 TATTTCCTGGGTTGACTTAGGCATACGG
*** * * * * **
23556625 AGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCTGTGGGATCGGTAGCACGCA
1 AGTTCATTCCA-GTCTAA-AATCAGACCAGACCGAGGGTTATGGCAGCAGGATCGGTAGCACGCA
* * ** *
23556689 GAAGGGGACCAGACCGATCCTCGGCTTGTGCATTATGCCTCTCCGACTGGCTCAATGCCCGCAC-
64 G-AGGGGACCAGACCAATCCCCGGCTTGCACATTATGCCTCTCCGACCGGCTCAATGCCCGCACA
* **
23556753 GCTCATTTCCTGGGTTGACTTAGGCATACTT
128 CCT-ATTTCCTGGGTTGACTTAGGCATACGG
* * **
23556784 AGTTAATTCCTAGTCTAAAATCAGACCAGACCGAGGGTTACGATAGCAGGATCG
1 AGTTCATTCC-AGTCTAAAATCAGACCAGACCGAGGGTTATGGCAGCAGGATCG
23556838 ACAACACATA
Statistics
Matches: 165, Mismatches: 42, Indels: 11
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.02
158 53 0.32
159 108 0.65
160 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
AGTTCATTCCAGTCTAAAATCAGACCAGACCGAGGGTTATGGCAGCAGGATCGGTAGCACGCAGA
GGGGACCAGACCAATCCCCGGCTTGCACATTATGCCTCTCCGACCGGCTCAATGCCCGCACACCT
ATTTCCTGGGTTGACTTAGGCATACGG
Found at i:23556854 original size:651 final size:650
Alignment explanation
Indices: 23555606--23556888 Score: 1628
Period size: 651 Copynumber: 2.0 Consensus size: 650
23555596 AGGCACACGA
* * * ***
23555606 AGTTCATTCCATGTCTAAGCCTCAGTCGAACCGAGGGTTGTGGCAATAAGACCGGTATTGGGATC
1 AGTTCATTCCATGTCTAAGCCTCAGTAGAACCGAGGGTTATGACAATAAGACCGGTAGCAGGATC
* * * * * *
23555671 GGCAACACGCAAAGGGGGATCAGGCTAATCTTCGGCTTGCATATTATGCCTCTCCGTCCGGCCTC
66 GGCAACACACAAAGGAGGATCAGGCTAATCCTCGGCTTACACATTATGCCTCTCCATCCGGCCTC
* * *
23555736 TCCGGCCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCT
131 TCCGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC
* * *
23555801 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTATGACAGCAGG
196 AGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATAGAACCAGACCGAGGGTTATGACAGCAGG
* * * ** * * *
23555866 ATCGGTAGCTCATAGGGGGATCGGGCTGATCCTCGACTTGCGCATTCTGCCTCTCCGGCAGGCTG
261 ATCGGTAGCACACAGGGGGACCGGGCCAATCCCCGACTTGCACATTCTGCCTCTCCGACAGGCTG
* *
23555931 AGCACCCGCACGCCCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCGC
326 AGCACCCGCACACCCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
* * * *
23555996 AGCCAGATCGAGGGTTGTGGCAGCAGGACTGACAGCACATAGTAGGGGACCAGGCCGATCCTCGA
391 AGCCAGACCGAGGGTTGTGGCAGCAGGACTGACAGCACACAGAAGGGGACCAGACCGATCCTCGA
* *
23556061 CTTGCGCATTATGCCTCTCCGGCTAGCTCAGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGC
456 CTTGCGCATTATGCCTCTCCGACTAGCTCAGCACCTGCACGCTCATTTCATGGGTTGACTTAGGC
* * * ** * *
23556126 ATACGGTGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGACAGTAGGATCGACAGA
521 ATACGGTGTTAATTCCCAGTCTAAAATCAGACCAGACCAAGGGTTACGACAGCAGGATCGACA-A
* * *
23556191 ACGCAGGGGGGATCTAGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCAACTGAGCATACG
585 ACACAAGGGGGATCGAGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCAACTGAGCATACG
23556256 G
650 G
* * * *
23556257 AGTTCATTCCATGTCTAAGCCTCAGCTAG-ACCGAGGGTTATGATAGTAGGATCGGTAGCAGGAT
1 AGTTCATTCCATGTCTAAGCCTCAG-TAGAACCGAGGGTTATGACAATAAGACCGGTAGCAGGAT
*** * * * * *
23556321 CGGTTGCACACAAAGGAGGATC-GAGCTGATCCTCGGCTTACGCATTATGCTTTTCCATCCGGCT
65 CGGCAACACACAAAGGAGGATCAG-GCTAATCCTCGGCTTACACATTATGCCTCTCCATCCGGCC
* * * *
23556385 TCTTCGGCTGGCTGAGCTCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCC
129 TCTCCGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCC
* *
23556450 CCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATTAG-ACCAGACCGAGGGTTATGGCAGC
194 CCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA-TAGAACCAGACCGAGGGTTATGACAGC
* * * *
23556514 AGGATCGGTAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCTGACCG
258 AGGATCGGTAGCACACA-GGGGGACCGGGCCAATCCCCGACTTGCACATTCTGCCTCTCCGACAG
** ** *
23556579 GCTGAGTGCCCGCACACCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
322 GCTGAGCACCCGCACACCCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAG
* * * ** ** *
23556644 CCCCAGTCGGACCGAGGGTTGTGGCTGTGGGA-TCGGTAGCACGCAGAAGGGGACCAGACCGATC
387 CCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACT-GACAGCACACAGAAGGGGACCAGACCGATC
* * * *
23556708 CTCGGCTTGTGCATTATGCCTCTCCGACTGGCTCAATGC-CC-GCACGCTCATTTCCTGGGTTGA
451 CTCGACTTGCGCATTATGCCTCTCCGACTAGCTC-A-GCACCTGCACGCTCATTTCATGGGTTGA
* * * *
23556771 CTTAGGCATAC-TTAGTTAATTCCTAGTCTAAAATCAGACCAGACCGAGGGTTACGATAGCAGGA
514 CTTAGGCATACGGT-GTTAATTCCCAGTCTAAAATCAGACCAGACCAAGGGTTACGACAGCAGGA
*
23556835 TCGAC-AACACATAGGGGGATCGAGCTGATCCCTGGCTTGTGCATTCTGCCTCTC
578 TCGACAAACACA-AGGGGGATCGAGCTGATCCCCGGCTTGTGCATTCTGCCTCTC
23556889 TGGTTGACTA
Statistics
Matches: 535, Mismatches: 88, Indels: 18
0.83 0.14 0.03
Matches are distributed among these distances:
650 6 0.01
651 268 0.50
652 256 0.48
653 3 0.01
654 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (650 bp):
AGTTCATTCCATGTCTAAGCCTCAGTAGAACCGAGGGTTATGACAATAAGACCGGTAGCAGGATC
GGCAACACACAAAGGAGGATCAGGCTAATCCTCGGCTTACACATTATGCCTCTCCATCCGGCCTC
TCCGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC
AGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATAGAACCAGACCGAGGGTTATGACAGCAGG
ATCGGTAGCACACAGGGGGACCGGGCCAATCCCCGACTTGCACATTCTGCCTCTCCGACAGGCTG
AGCACCCGCACACCCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
AGCCAGACCGAGGGTTGTGGCAGCAGGACTGACAGCACACAGAAGGGGACCAGACCGATCCTCGA
CTTGCGCATTATGCCTCTCCGACTAGCTCAGCACCTGCACGCTCATTTCATGGGTTGACTTAGGC
ATACGGTGTTAATTCCCAGTCTAAAATCAGACCAGACCAAGGGTTACGACAGCAGGATCGACAAA
CACAAGGGGGATCGAGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCAACTGAGCATACGG
Found at i:23556983 original size:26 final size:26
Alignment explanation
Indices: 23556933--23556985 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23556923 GTTGGCTTAG
*
23556933 GCATACACAGTTCATTCCATGTCTAA
1 GCATACACAGTTCATTCCATATCTAA
*
23556959 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACACAGTTCATT-CCATATCTAA
23556985 G
1 G
23556986 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACACAGTTCATTCCATATCTAA
Found at i:23557350 original size:26 final size:26
Alignment explanation
Indices: 23557314--23557366 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23557304 GTTAACTTAG
23557314 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
23557340 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23557366 G
1 G
23557367 ATCGAATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23557841 original size:26 final size:26
Alignment explanation
Indices: 23557812--23557864 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23557802 GTTGGCTTAG
*
23557812 GCATACGGAGGTCATT-CCATGTCTAA
1 GCATACAGAGGTCATTCCCA-GTCTAA
*
23557838 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGGTCATTCCCAGTCTAA
23557864 G
1 G
23557865 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGGTCATTCCCAGTCTAA
Found at i:23558725 original size:25 final size:26
Alignment explanation
Indices: 23558691--23558742 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
23558681 GTTGGCTTAG
23558691 GCATACGGAGTT-ATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
23558716 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23558742 G
1 G
23558743 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 11 0.46
26 10 0.42
27 3 0.12
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23559219 original size:342 final size:341
Alignment explanation
Indices: 23558460--23559431 Score: 855
Period size: 342 Copynumber: 2.8 Consensus size: 341
23558450 ACCACGTGTT
* ** * * * *
23558460 CGAT-CCCAGGCTTGCGCATCCTGCCTCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
1 CGATACCC-GGCTTGCGCATTCTGCCTCTCCAGCCGACTGAGCGCCCGCACACCCGTATCGTGGG
* * * * * * * * *
23558524 TTGACTTAGGCATACGGAGTTCATTCCCA-ATCT-AGGCTCAGATCGGATCGAGGGTTGCGGCAA
65 TTGGCTTAGCCATACGGAGTTCATT-CCATCTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGCAG
* * * * * * * * * * * * *
23558587 TAGGATCGGTAGCATGTAG-GGGGGACCGAGTCGATTCTCGGCTTGA-GCATTTTGCCTCTTCGA
128 CAGGACCGATAGCACGCAGAGGGGGATCGAGCCGA-ACCCGGCTT-ACACATTATGCCTCTCCGG
* ** * * ** * *
23558650 TCGGCTGAGCGCCCATACACCCGTTTCCTAGG-TTGGCTTAGGCATACGGAGTT-ATTCCATGTC
191 TCGGCTCAGCGCCCGCACACTCGTTTCGT-GGCTTCACTTAGGCACACGGAGTTCATCCCATGTC
*** * * * * * ** *
23558713 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGATAGCAGGACCA
255 TAAGCATACAAAGTTCATTCCCTGTCTAAGAT-TGATCAGATCGAGGGTTGCGGCAGCAGGATC-
* *
23558778 GCAGTAGGATCGGTAGCACGTAGGGGCAGACCGGGC
318 G-A-TA-G-T--G-CGCA-G-A-GGG--GATCGGGC
* * * * * *
23558814 CGATCCCCGGCTTGCGCATTCTGTCTCTCCAGCTGACTGAGCGCCCGTACACTCGTTTCGTGGGT
1 CGATACCCGGCTTGCGCATTCTGCCTCTCCAGCCGACTGAGCGCCCGCACACCCGTATCGTGGGT
*
23558879 TGGCTTAGCCATACGGAGTTCATTCCATCTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGTAG
66 TGGCTTAGCCATACGGAGTTCATTCCATCTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAG
* * * *
23558944 GACC-AGTAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGGTCG
131 GACCGA-TAGCACGCAGAGGGGGATCGAGCCGA-ACCCGGCTTACACATTATGCCTCTCCGGTCG
* * * * * * *
23559008 GTTGAGCGCCTGCACGCTTGTTTCGTGGGTTCACTTAGGCACATGGAGTTCATCCCCA-GTCTAA
194 GCTCAGCGCCCGCACACTCGTTTCGTGGCTTCACTTAGGCACACGGAGTTCAT-CCCATGTCTAA
* *
23559072 GCATATAGAGTTCATTCCCTGTCTAAGATTGATCAGATCGAGGGTTGCGGCAGCAGGATCGATAG
258 GCATACAAAGTTCATTCCCTGTCTAAGATTGATCAGATCGAGGGTTGCGGCAGCAGGATCGATAG
23559137 TGCGCAGAGGGGATCGGGC
323 TGCGCAGAGGGGATCGGGC
* * **
23559156 CGATACCCGGTTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCATGCCCGTATCGTGGGT
1 CGATACCCGGCTTGCGCATTCTGCCTCTCCAGCCGACTGAGCGCCCGCACACCCGTATCGTGGGT
* * * * * *
23559221 TGGCTTAGGCATAGGGTGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGG
66 TGGCTTAGCCATACGGAGTTCATTCCATCTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAG
* * * *
23559286 GATCGATAGCACGCAGAGGGGGATCGAGCCGAACCCGGTTTGCACATTATGCCTCTTCGGTCGGC
131 GACCGATAGCACGCAGAGGGGGATCGAGCCGAACCCGGCTTACACATTATGCCTCTCCGGTCGGC
* ** * * *
23559351 TCAGCGCCCGTACACTCGTTTCGTGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAGGCA
196 TCAGCGCCCGCACACTCGTTTCGTGGCTTCACTTAGGCACACGGAGTTCATCCCATGTCTAAGCA
23559416 TACAAAGTTCATTCCC
261 TACAAAGTTCATTCCC
23559432 AAAGTAAGAT
Statistics
Matches: 513, Mismatches: 94, Indels: 35
0.80 0.15 0.05
Matches are distributed among these distances:
340 3 0.01
341 90 0.18
342 147 0.29
343 1 0.00
344 3 0.01
345 1 0.00
346 1 0.00
347 3 0.01
348 1 0.00
350 1 0.00
351 1 0.00
352 2 0.00
353 4 0.01
354 114 0.22
355 103 0.20
356 35 0.07
357 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (341 bp):
CGATACCCGGCTTGCGCATTCTGCCTCTCCAGCCGACTGAGCGCCCGCACACCCGTATCGTGGGT
TGGCTTAGCCATACGGAGTTCATTCCATCTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAG
GACCGATAGCACGCAGAGGGGGATCGAGCCGAACCCGGCTTACACATTATGCCTCTCCGGTCGGC
TCAGCGCCCGCACACTCGTTTCGTGGCTTCACTTAGGCACACGGAGTTCATCCCATGTCTAAGCA
TACAAAGTTCATTCCCTGTCTAAGATTGATCAGATCGAGGGTTGCGGCAGCAGGATCGATAGTGC
GCAGAGGGGATCGGGC
Found at i:23559322 original size:158 final size:158
Alignment explanation
Indices: 23559110--23559411 Score: 417
Period size: 158 Copynumber: 1.9 Consensus size: 158
23559100 TTGATCAGAT
** * *
23559110 CGAGGGTTGCGGCAGCAGGATCGATAGTGCGCAGAGGGGATCGGGCCGATACCCGGTTTGCGCAT
1 CGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGAGGGGATCGAGCCGATACCCGGTTTGCACAT
* * ** * * *
23559175 TCTGCCTCTCCAGCCGGCTGAGCGCCCGCATGCCCGTATCGTGGGTTGGCTTAGGCATAGGGTGT
66 TATGCCTCTCCAGCCGGCTCAGCGCCCGCACACCCGTATCGTGGCTTGGCTTAGGCATACGGAGT
23559240 TCATTCCATGTCTAAGCCCCAGCCGGAC
131 TCATTCCATGTCTAAGCCCCAGCCGGAC
* *
23559268 CGAGGGTTGTGGCAGCGGGATCGATAGCACGCAGAGGGGGATCGAGCCGA-ACCCGGTTTGCACA
1 CGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGA-GGGGATCGAGCCGATACCCGGTTTGCACA
* * * * * *
23559332 TTATGCCTCTTCGGTCGGCTCAGCGCCCGTACACTCGTTTCGTGGCTTGGCTTAGGCATACGGAG
65 TTATGCCTCTCCAGCCGGCTCAGCGCCCGCACACCCGTATCGTGGCTTGGCTTAGGCATACGGAG
23559397 TTCATTCCATGTCTA
130 TTCATTCCATGTCTA
23559412 GGCATACAAA
Statistics
Matches: 124, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
158 111 0.90
159 13 0.10
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.23
Consensus pattern (158 bp):
CGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGAGGGGATCGAGCCGATACCCGGTTTGCACAT
TATGCCTCTCCAGCCGGCTCAGCGCCCGCACACCCGTATCGTGGCTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCAGCCGGAC
Found at i:23560453 original size:159 final size:159
Alignment explanation
Indices: 23560279--23560638 Score: 411
Period size: 158 Copynumber: 2.3 Consensus size: 159
23560269 CGCCTGTTTT
* * * * *
23560279 GTGGGATGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGTC-GGACCAAGGGTTATG
1 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACAGGACCAAGGGTTATG
** ** * *
23560343 GTAGTGGGACCGGCAGCACGCAACAAAGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTC
66 ACAGCAGGACCGACAGCACGC-ACAAAGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTC
* *
23560408 CAACTGGCTCAGCGCCCGCACACTCATTTC
130 CAACTGGCTCAGCGCCCACACACTCATTCC
* * * * *
23560438 GTGGGTTGACTTAGGCATACAGAGTTCATTCTCA-GTCTAAG-ATCAGACAGGATCGAGGGTTAT
1 GTGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCACCAGACAGGACCAAGGGTTAT
* * **** *
23560501 GACAGCAGGATCGACAGTACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTC
65 GACAGCAGGACCGACAGCACGCACAAAGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTC
** * * *
23560566 TGACTGGCTGAGCGCCCACACGCTCGTTCC
130 CAACTGGCTCAGCGCCCACACACTCATTCC
23560596 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
23560639 TACGAAGTTC
Statistics
Matches: 165, Mismatches: 32, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 100 0.61
159 61 0.37
160 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (159 bp):
GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACAGGACCAAGGGTTATG
ACAGCAGGACCGACAGCACGCACAAAGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCC
AACTGGCTCAGCGCCCACACACTCATTCC
Found at i:23560639 original size:26 final size:26
Alignment explanation
Indices: 23560610--23560662 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23560600 GTTGGCTTAG
*
23560610 GCATACGGAGTTCATTCCAT-GTCTAA
1 GCATACGAAGTTCATT-CATAGTCTAA
23560636 GCATACGAAGTTCATTCATAGTCTAA
1 GCATACGAAGTTCATTCATAGTCTAA
23560662 G
1 G
23560663 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCATAGTCTAA
Found at i:23561541 original size:26 final size:26
Alignment explanation
Indices: 23561490--23561542 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23561480 GTTGGCTTAG
*
23561490 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGCCTAA
*
23561516 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACAGAGTTCATT-CCATGCCTAA
23561542 G
1 G
23561543 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGCCTAA
Found at i:23568646 original size:158 final size:158
Alignment explanation
Indices: 23568176--23568670 Score: 514
Period size: 158 Copynumber: 3.1 Consensus size: 158
23568166 AAGCATACAA
* *
23568176 AGTTCATT-CATAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCATGCA
1 AGTTCATTCCATA-TCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCA
* * * * * * * *
23568240 GGGGGGATCGGGTCGAT-CCCTAGCTTACGCATTCTGCCTGTCCAATCGGTTGAGCGCCCGCATG
65 GGGGGGACCGGGTCGATCCCCGA-CTTACGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACG
*
23568304 C-CTGTTTCATGGGTTGGCTTAGGCATAGGG
129 CTC-GTTTCATGGGTTGGCTTAGGCATACGG
* ** * * * * * *
23568334 AGTTCATTCCATGTCTAAGCCCCAG-CTC-GACCGAGGGTTGTGGCAACGGGACCGAGAGCACGT
1 AGTTCATTCCATATCTAAG-ATCAGAC-CAGACCGAGGGTTGTGACAGCAGGATCGACAGCACGC
* * * * * * *
23568397 AGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCAGCTTAGCGCCCGTAC
64 AG-GGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGCAC
* *
23568462 GCTCGTTTCATGGGTTGACTTCGGCATACGG
128 GCTCGTTTCATGGGTTGGCTTAGGCATACGG
* * * * *
23568493 AGTTCATTCCCTATCTAAGATCAGACCAGACCAAGGGTTGTGACAGTAGCATCGATAGCACGCAG
1 AGTTCATTCCATATCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAG
* * * * * *
23568558 GGGAGACCGGATCGGTCCCCGACTTACGTATTCTACCTCTCCGACCAGCTGAGCACCCGCACGCT
66 GGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACGCT
* *
23568623 CGTTTCGTGGGTTGGCTTAGGCATACGA
131 CGTTTCATGGGTTGGCTTAGGCATACGG
*
23568651 AGTTCATTCCATGTCTAAGA
1 AGTTCATTCCATATCTAAGA
23568671 ATAGAGAGTT
Statistics
Matches: 268, Mismatches: 61, Indels: 16
0.78 0.18 0.05
Matches are distributed among these distances:
158 142 0.53
159 123 0.46
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
AGTTCATTCCATATCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAG
GGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACGCT
CGTTTCATGGGTTGGCTTAGGCATACGG
Found at i:23569049 original size:26 final size:26
Alignment explanation
Indices: 23569019--23569072 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
23569009 TGGGTTGACT
23569019 TAGGCATACAGAGTTCATCCCCAGTC
1 TAGGCATACAGAGTTCATCCCCAGTC
* *
23569045 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATCCCCAGTC
23569071 TA
1 TA
23569073 AGATCGGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATCCCCAGTC
Found at i:23569107 original size:31 final size:31
Alignment explanation
Indices: 23569072--23569141 Score: 122
Period size: 31 Copynumber: 2.3 Consensus size: 31
23569062 TTCCCAGTCT
23569072 AAGATCGGACCGGATCGAGGGTTGCGACAGC
1 AAGATCGGACCGGATCGAGGGTTGCGACAGC
* *
23569103 AAGATCGGACCGGATCGAGTGTTGCGACAGT
1 AAGATCGGACCGGATCGAGGGTTGCGACAGC
23569134 AAGATCGG
1 AAGATCGG
23569142 TAGCACGCAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.27, C:0.20, G:0.37, T:0.16
Consensus pattern (31 bp):
AAGATCGGACCGGATCGAGGGTTGCGACAGC
Found at i:23569442 original size:159 final size:159
Alignment explanation
Indices: 23569103--23570530 Score: 1178
Period size: 159 Copynumber: 9.0 Consensus size: 159
23569093 TTGCGACAGC
* * * * * * ** * *
23569103 AAGATCGGA-CCGGATCGAGTGTTGCGACAGTAAGATCGGTAGCACGCAGGGGGGACCGGGCCGA
1 AAGATCCGAGCCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGATCGGGCCGA
* * * * * * ** * * *
23569167 TCCCCAGCTTGCGTATTCTGCCTCTTCGATCGGTTGGGTGCCTGCACGCCCGTTTCGTGGGTTGG
66 TCCTCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGA
*
23569232 CTTAGGCATAGGGAGTTCATTCCATGTCT
131 CTTAGGCATACGGAGTTCATTCCATGTCT
* * * * ** *
23569261 AAG-CCCCATCCGGATCGAGGGTTGTGGCAGCGGGATCGACAGCATTCAGGAGGGGATCGGACCG
1 AAGATCCGAGCCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA-GAGGGGATCGGGCCG
* * * * * *
23569325 ATCC-CTGGCTTGTGCATTATGCCTCTTCGACTGGCTCAGCACCCGCACGTTCGTTTTGTGGGTT
65 ATCCTC-GGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
*
23569389 GACTTATGCATACGGAGTTCATTCTCA-GTCT
129 GACTTAGGCATACGGAGTTCATTC-CATGTCT
* * * * * ** *
23569420 AAGATCGGA-CCGGACCGAGGGTTATGACAGCAAGATCGACAGCATACAG-GAGGGATCGGGCTG
1 AAGATCCGAGCCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAG-GGGATCGGGCCG
* * * *
23569483 ATCCCCAGCTTGCGCATTCTGCCTC-TCTGACCGGCTGAGCGCCCGCACGC-CTGTTTCATGGGT
65 ATCCTCGGCTTGCGCATTCTGCCTCTTC-GACCGGCTGAGCACCCGCACGCTC-GTTTCGTGGGT
* *
23569546 TGGCTTAGGCATAGGGAGTTCATTCCATGTCT
128 TGACTTAGGCATACGGAGTTCATTCCATGTCT
* * * *
23569578 AAGA-CCCAGCCGGATCGAGGGTTGTGGCAGC-GGCATCGGCAGCATGCAGAGAAGGATCGGGCC
1 AAGATCCGAGCCGGATCGAGGGTTGTGGCAGCAGG-ATCGACAGCACGCAGAG-GGGATCGGGCC
* * * * * * *
23569641 GATCCTCGACTTGTGCATTATGCCTCTTCGGCCAGCTCAGCACCCGCACGCTCATTTCGTGGGTT
64 GATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
* *
23569706 GACTTATGCATACAGAGTTCATTTCCA-GTCT
129 GACTTAGGCATACGGAGTTCA-TTCCATGTCT
* * ** *
23569737 AAGATCAGA-CCGGA-CTGAGGGTTTTGGCAGCAGGATCGGTAGCACGCA-AGGGGGATCGAGCC
1 AAGATCCGAGCCGGATC-GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGA-GGGGATCGGGCC
* * * * * * * *
23569799 GATCCTCAGCTTGCGCATTCTGCCTCTTC-AGTCGACTGGGCACCTGCACGCCCATTTCGTTGGT
64 GATCCTCGGCTTGCGCATTCTGCCTCTTCGA-CCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* *
23569863 TGGCTTAGGCATAGGGAGTTCATTCCATGTCT
128 TGACTTAGGCATACGGAGTTCATTCCATGTCT
* * * * ** * **
23569895 AAG-CCCCAGCCGGATTGAGGGTTGTGGCAGCGGGA-CTGGTAGCACGCAGAGGGGGACCGGATC
1 AAGATCCGAGCCGGATCGAGGGTTGTGGCAGCAGGATC-GACAGCACGCAGA-GGGGATCGGGCC
* * ** * * * * * * *
23569958 GATCCTCGGCTTGTGCATTATGCCTCTTCGGTCAGCTCAACACCTGTATGCTCGTTTCGTGGGTC
64 GATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
23570023 GACTTAGGCATACGGAGTTCATTCCCA-GTCT
129 GACTTAGGCATACGGAGTTCATT-CCATGTCT
* * ** * * * *
23570054 AAGATCGGA-CCAGATCGAGGGTTACGACAGCAGGATCGATAGCACGCAG-GGGGACCGGGCTGA
1 AAGATCCGAGCCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGATCGGGCCGA
* ** ** * *
23570117 TCCTCGGCTTGCGCATTCTGCCTCTCCGACCGATTGAGTGCCCGCACGC-CAGTTTCATGGCTTG
66 TCCTCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCTC-GTTTCGTGGGTTG
* *
23570181 GCTTAGGCATAGGGAGTTCATTCCATGTCT
130 ACTTAGGCATACGGAGTTCATTCCATGTCT
* * * * * *** * *
23570211 AAG-CCCTAGCCGGATTGATGGTTGTGGCAGCGGGATCGACAGCATTTAGAGGCAGATCGGGCTG
1 AAGATCCGAGCCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGG-GGATCGGGCCG
* * * * **
23570275 ATCCCCGGCTTGCGCATTTTGCCTCTTCGACCGGTTTAGTGCCCGCACGCTCGTTTCGTGGGTTG
65 ATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTG
**
23570340 ACTTATACATACGGAGTTCATTCC-TAGTCT
130 ACTTAGGCATACGGAGTTCATTCCAT-GTCT
* * * * * * * * * * *
23570370 AAGATCAGA-TCGAACCAAGGGTTGCGGCAGCAGGATTGACAGCACCCAGGGGGGTTCGGGCTGA
1 AAGATCCGAGCCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGATCGGGCCGA
* * *
23570434 TCCCCGGCTTGCGCATTCTACCT-TTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
66 TCCTCGGCTTGCGCATTCTGCCTCTT-CGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTG
*
23570498 CCTTAGGCATACGGAGTTCATTCCATGTCT
130 ACTTAGGCATACGGAGTTCATTCCATGTCT
23570528 AAG
1 AAG
23570531 CATATGGAGT
Statistics
Matches: 1011, Mismatches: 219, Indels: 80
0.77 0.17 0.06
Matches are distributed among these distances:
156 6 0.01
157 132 0.13
158 369 0.36
159 479 0.47
160 25 0.02
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
AAGATCCGAGCCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGATCGGGCCGA
TCCTCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGA
CTTAGGCATACGGAGTTCATTCCATGTCT
Found at i:23569681 original size:317 final size:316
Alignment explanation
Indices: 23569103--23570531 Score: 1650
Period size: 317 Copynumber: 4.5 Consensus size: 316
23569093 TTGCGACAGC
* * * * * * * *
23569103 AAGATCGGACCGGATCGAGTGTTGCGACAGTAAGATCGGTAGCACGCAGGGGGGACCGGGCCGAT
1 AAGATCGGACCGGACCGAGGGTTACGACAGCAGGATCGATAGCACGCA-GGGGGATCGGGCTGAT
* * * * * *
23569168 CCCCAGCTTGCGTATTCTGCCTCT-TCGATCGGTTGGGTGCCTGCACGCCCGTTTCGTGGGTTGG
65 CCCCAGCTTGCGCATTCTGCCTCTCT-GACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGG
*
23569232 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCCGGATCGAGGGTTGTGGCAGCGGGAT
129 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGAT
* * **
23569297 CGACAGCATTCAG-GAGGGGATCGGACCGATCC-CTGGCTTGTGCATTATGCCTCTTCGACTGGC
194 CGACAGCATGCAGAGA-AGGATCGGACCGATCCTC-GGCTTGTGCATTATGCCTCTTCGACCAGC
* *
23569360 TCAGCACCCGCACGTTCGTTTTGTGGGTTGACTTATGCATACGGAGTTCATTCTCAGTCT
257 TCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCTCAGTCT
* * * **
23569420 AAGATCGGACCGGACCGAGGGTTATGACAGCAAGATCGACAGCATACAGGAGGGATCGGGCTGAT
1 AAGATCGGACCGGACCGAGGGTTACGACAGCAGGATCGATAGCACGCAGG-GGGATCGGGCTGAT
* *
23569485 CCCCAGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCCTGTTTCATGGGTTGGC
65 CCCCAGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGC
* *
23569550 TTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGCCGGATCGAGGGTTGTGGCAGCGGCATC
130 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGATC
* * * *
23569615 GGCAGCATGCAGAGAAGGATCGGGCCGATCCTCGACTTGTGCATTATGCCTCTTCGGCCAGCTCA
195 GACAGCATGCAGAGAAGGATCGGACCGATCCTCGGCTTGTGCATTATGCCTCTTCGACCAGCTCA
* *
23569680 GCACCCGCACGCTCATTTCGTGGGTTGACTTATGCATACAGAGTTCATT-TCCAGTCT
260 GCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCT-CAGTCT
* * ** * * * *
23569737 AAGATCAGACCGGACTGAGGGTTTTGGCAGCAGGATCGGTAGCACGCAAGGGGGATCGAGCCGAT
1 AAGATCGGACCGGACCGAGGGTTACGACAGCAGGATCGATAGCACGC-AGGGGGATCGGGCTGAT
* * * * * * * * *
23569802 CCTCAGCTTGCGCATTCTGCCTCT-TCAGTCGACTGGGCACCTGCACGCCCATTTCGTTGGTTGG
65 CCCCAGCTTGCGCATTCTGCCTCTCTGA-CCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGG
*
23569866 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATTGAGGGTTGTGGCAGCGGGA-
129 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGAT
** * ** * * **
23569930 CTGGTAGCACGCAGAGGGGGACCGGATCGATCCTCGGCTTGTGCATTATGCCTCTTCGGTCAGCT
194 C-GACAGCATGCAGAGAAGGATCGGACCGATCCTCGGCTTGTGCATTATGCCTCTTCGACCAGCT
* * * * * * *
23569995 CAACACCTGTATGCTCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCT
258 CAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCTCAGTCT
* * *
23570054 AAGATCGGACCAGATCGAGGGTTACGACAGCAGGATCGATAGCACGCAGGGGGACCGGGCTGATC
1 AAGATCGGACCGGACCGAGGGTTACGACAGCAGGATCGATAGCACGCAGGGGGATCGGGCTGATC
* * * ** * * * *
23570119 CTCGGCTTGCGCATTCTGCCTCTCCGACCGATTGAGTGCCCGCACGCCAGTTTCATGGCTTGGCT
66 CCCAGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCT
* * *
23570184 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGATTGATGGTTGTGGCAGCGGGATCG
131 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGATCG
** * * * * * * * * *
23570249 ACAGCATTTAGAGGCA-GATCGGGCTGATCCCCGGCTTGCGCATTTTGCCTCTTCGACCGGTTTA
196 ACAGCATGCAGA-GAAGGATCGGACCGATCCTCGGCTTGTGCATTATGCCTCTTCGACCAGCTCA
** *
23570313 GTGCCCGCACGCTCGTTTCGTGGGTTGACTTATACATACGGAGTTCATTC-CTAGTCT
260 GCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCTC-AGTCT
* * * * * * * * * *
23570370 AAGATCAGATCGAACCAAGGGTTGCGGCAGCAGGATTGACAGCACCCAGGGGGGTTCGGGCTGAT
1 AAGATCGGACCGGACCGAGGGTTACGACAGCAGGATCGATAGCACGCA-GGGGGATCGGGCTGAT
* * * * * *
23570435 CCCCGGCTTGCGCATTCTACCTTTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGCC
65 CCCCAGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGC
*
23570500 TTAGGCATACGGAGTTCATTCCATGTCTAAGC
130 TTAGGCATAGGGAGTTCATTCCATGTCTAAGC
23570532 ATATGGAGTT
Statistics
Matches: 941, Mismatches: 157, Indels: 28
0.84 0.14 0.02
Matches are distributed among these distances:
315 1 0.00
316 257 0.27
317 676 0.72
318 7 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (316 bp):
AAGATCGGACCGGACCGAGGGTTACGACAGCAGGATCGATAGCACGCAGGGGGATCGGGCTGATC
CCCAGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCT
TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGATCG
ACAGCATGCAGAGAAGGATCGGACCGATCCTCGGCTTGTGCATTATGCCTCTTCGACCAGCTCAG
CACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCTCAGTCT
Found at i:23570540 original size:26 final size:26
Alignment explanation
Indices: 23570504--23570556 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23570494 GTTGCCTTAG
23570504 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
23570530 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23570556 G
1 G
23570557 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23571264 original size:26 final size:26
Alignment explanation
Indices: 23571228--23571278 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
23571218 TGACTTAGGT
23571228 ATACGAAGTTCATCCCCAGTCTAAGC
1 ATACGAAGTTCATCCCCAGTCTAAGC
* * *
23571254 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
23571279 ATCAGATCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGC
Found at i:23571629 original size:159 final size:157
Alignment explanation
Indices: 23571252--23571659 Score: 374
Period size: 159 Copynumber: 2.6 Consensus size: 157
23571242 CCCAGTCTAA
* * * * *
23571252 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAATAGGATCGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATTGATA
* * * * *
23571317 GCACGTAGGGGGGACCGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGTTGAGCGCCC
66 GCACGTAGGGAGGACCGGCCGATCCCCGACTTACGCATTATGCCTCTCCAGCCGGCTCAGCGCCC
* ** *
23571382 GCACGTCCGTTTTGTGGGTTGGCTTAG
131 GCACGTCCATTTCATGGGTTGACTTAG
* * * ** * * * **
23571409 GCATAGGGAGTTCATTCC-ATGTTTGAGCCCCA-TCCGGGCCGAGGGTTGTGGTAGCGGGATTGA
1 GCATACGGAGTTCATTCCTA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGTAGGATTGA
* * * * * * *
23571472 CAGCACGCATA-GGAGGACTGGGTCGATCCTCGGCTTATGCATTATGCCTCTCCTGCCGGCTCAG
64 TAGCACG--TAGGGAGGAC-CGGCCGATCCCCGACTTACGCATTATGCCTCTCCAGCCGGCTCAG
* *
23571536 TGCCCGCATG-CTCATTTCATGGGTTGACTTAG
126 CGCCCGCACGTC-CATTTCATGGGTTGACTTAG
* * *
23571568 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAAGATTGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATTGATA
* * *
23571633 GCACATAGGGGGGACCAGGGCGATCCC
66 GCACGTAGGGAGGACC-GGCCGATCCC
23571660 TGGCTTTCGC
Statistics
Matches: 190, Mismatches: 51, Indels: 19
0.73 0.20 0.07
Matches are distributed among these distances:
156 1 0.01
157 51 0.27
158 25 0.13
159 112 0.59
160 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATTGATA
GCACGTAGGGAGGACCGGCCGATCCCCGACTTACGCATTATGCCTCTCCAGCCGGCTCAGCGCCC
GCACGTCCATTTCATGGGTTGACTTAG
Found at i:23572122 original size:26 final size:26
Alignment explanation
Indices: 23572093--23572145 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23572083 GTTGACTTAG
*
23572093 GCATACGAAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
23572119 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
23572145 G
1 G
23572146 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:23574386 original size:26 final size:26
Alignment explanation
Indices: 23574350--23574402 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23574340 GTTGACTTAG
*
23574350 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCACTCCC-AGTCTAA
23574376 GCATACAGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
23574402 G
1 G
23574403 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:23576026 original size:13 final size:13
Alignment explanation
Indices: 23576005--23576056 Score: 59
Period size: 13 Copynumber: 4.0 Consensus size: 13
23575995 TGCATTATGC
* *
23576005 CTCTTCGACCGAT
1 CTCTCCGACCGGT
*
23576018 CTCTCCGACTGGT
1 CTCTCCGACCGGT
*
23576031 CTCTCTGACCGGT
1 CTCTCCGACCGGT
*
23576044 CTCTCCGATCGGT
1 CTCTCCGACCGGT
23576057 TGAGCACCCA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.10, C:0.38, G:0.21, T:0.31
Consensus pattern (13 bp):
CTCTCCGACCGGT
Found at i:23576484 original size:26 final size:26
Alignment explanation
Indices: 23576448--23576500 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23576438 GTTGACTTAG
23576448 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23576474 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23576500 G
1 G
23576501 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23576715 original size:356 final size:355
Alignment explanation
Indices: 23576070--23576721 Score: 893
Period size: 356 Copynumber: 1.8 Consensus size: 355
23576060 GCACCCATAT
23576070 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCGAAGCATACAAAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCGAAGCATACAAAGTTCATT
* ** * * * * *
23576135 CCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGTAGCAGGATTAGTAGCACGTAGAGGGGACC
66 CCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAACAAGATGAGCAGCACGCAGAGGGGACC
* * * *
23576200 AGGCGGTCCCCGACTTACGCATTCTGCCACTCCGGATGGCTGAGCACCCTCACGCCCATTTTCTG
131 AGGCGATCCCCGACTTACGCATTCTGCCACTCCGAATGGCTGAGCACCCTCACACCCAGTTTCTG
* ** * *
23576265 GGTTGGCTTAGGCATAGGGAGTTCATTCCGTGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAG
196 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGAGGGTTGCGACAG
* *
23576330 CGGGACCGATAGCACCCAGAGGAGGATCGGTCTGATTGTCAGCTTGCGTATTCTACCTTTCCAGC
261 CGGGACCGATAGCACCCAAAGGAGGATCGGGCTGATTGTCAGCTTGCGTATTCTACCTTTCCAGC
23576395 TAGCCTCTCCGGCCGGCTAAGCGCTCGCAC
326 TAGCCTCTCCGGCCGGCTAAGCGCTCGCAC
* **
23576425 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCGAAGCATACAAAGTTCATT
* * *
23576490 CCCAGTCTAAGATC-GAACCGGATCGAGGGTTACGACAACAAGATCGA-CAGCATGCAGGGGGGA
66 CCCAGTCTAAGATCAG-ACCGGACCGAGGGTTACGACAACAAGAT-GAGCAGCACGCAGAGGGGA
* * * * *
23576553 CC-GAGCTGATCTCCGGCTTGCGCATTCTGCCTCTCC-AACTGGCTGAGCA-CCTGCACACTC-G
129 CCAG-GC-GATCCCCGACTTACGCATTCTGCCACTCCGAA-TGGCTGAGCACCCT-CACACCCAG
*
23576614 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTT
190 TTTC-TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGAGGGTT
* * *
23576679 GCGACAGCGGGACTGATAGCACGCAAAGGGGGATCGGGCTGAT
254 GCGACAGCGGGACCGATAGCACCCAAAGGAGGATCGGGCTGAT
23576722 CCCTGGCTTG
Statistics
Matches: 256, Mismatches: 34, Indels: 13
0.84 0.11 0.04
Matches are distributed among these distances:
354 2 0.01
355 122 0.48
356 132 0.52
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (355 bp):
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCGAAGCATACAAAGTTCATT
CCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAACAAGATGAGCAGCACGCAGAGGGGACC
AGGCGATCCCCGACTTACGCATTCTGCCACTCCGAATGGCTGAGCACCCTCACACCCAGTTTCTG
GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGAGGGTTGCGACAG
CGGGACCGATAGCACCCAAAGGAGGATCGGGCTGATTGTCAGCTTGCGTATTCTACCTTTCCAGC
TAGCCTCTCCGGCCGGCTAAGCGCTCGCAC
Found at i:23577742 original size:158 final size:158
Alignment explanation
Indices: 23577451--23577787 Score: 437
Period size: 158 Copynumber: 2.1 Consensus size: 158
23577441 CTAAGCTTAT
* * *
23577451 GGAGTTCATTCCCAGTCTAAGAACGGACCAGGCCGACGGTTGCGGCAGCAGGATCAACAGCACGC
1 GGAGTTCATTCCCAGTCTAAGAACAGACCAGGCCGACGGTTACGACAGCAGGATCAACAGCACGC
* * * * * *
23577516 AGGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGAGTGGCTGAGCACCCGTATG
66 AGGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACTGGCTGAGCACCCGCACG
23577581 CTCATTTCATGGGTTGACTTAGGCATAC
131 CTCATTTCATGGGTTGACTTAGGCATAC
* * * *
23577609 GGAGTTCATTCCCAGTCTAAGATCAGACC-GGACCGAGGGTTACGACAGCAGGATCGACAGCATG
1 GGAGTTCATTCCCAGTCTAAGAACAGACCAGG-CCGACGGTTACGACAGCAGGATCAACAGCACG
* * * * * *
23577673 TAGGGGGGACCGAGTCGATCCCCGACTTACGCATTTTGCCTCTTCGACCT-GTTGAGTACCCGCA
65 CAGGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGA-CTGGCTGAGCACCCGCA
* *
23577737 CGCTCATTTTATGGGTTGGCTTAGGCATAC
129 CGCTCATTTCATGGGTTGACTTAGGCATAC
23577767 GGAGTTCATT-CCATGTCTAAG
1 GGAGTTCATTCCCA-GTCTAAG
23577788 CATACGAAGT
Statistics
Matches: 155, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
157 5 0.03
158 149 0.96
159 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GGAGTTCATTCCCAGTCTAAGAACAGACCAGGCCGACGGTTACGACAGCAGGATCAACAGCACGC
AGGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACTGGCTGAGCACCCGCACG
CTCATTTCATGGGTTGACTTAGGCATAC
Found at i:23577798 original size:26 final size:25
Alignment explanation
Indices: 23577761--23577812 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
23577751 GTTGGCTTAG
*
23577761 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCA-GTCTAA
23577787 GCATACGAAGTTCATTCCAGTCTAA
1 GCATACGAAGTTCATTCCAGTCTAA
23577812 G
1 G
23577813 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAGTCTAA
Found at i:23578655 original size:159 final size:160
Alignment explanation
Indices: 23578387--23578850 Score: 492
Period size: 159 Copynumber: 2.9 Consensus size: 160
23578377 AGACCGGACT
* * * *
23578387 GAGGGTTGTGGCAGCAGGATCGACAGCACGTAG-GGGGGACCGGGTTGATCCCCGACTTGTGCAT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGTTGATCCACGGCTTGCGCAT
* * * * * * * *
23578451 TCTACCTCTCCGATCGGCTGAGCGCCAGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
66 TCTGCTTCTCCGACCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
* * *
23578516 TCATTCTATGTCTAAGCCCCA-G-TTGAACC
131 TCATTCCATGTCTAAG-CACAGGACTGAACC
* ** * *
23578545 GAGGGTTGTGGTAGTGGGATCGATAGCACGCAGAGGGGGACCGGGTCGATCCACGGCTTGCGCAT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGTTGATCCACGGCTTGCGCAT
* * * * * *
23578610 TATGCTTCTCCAACCGGCTCAATGCCCGGACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
66 TCTGCTTCTCCGACCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
* *
23578675 TCATTCCCA-GTCTAAG-ATAGGACTGGACC
131 TCATT-CCATGTCTAAGCACAGGACTGAACC
* * * ** ** *
23578704 GAGGGTTGTAGCAGCAGGATTGACAGCATGCA-AGGGGGACCAAGTTGATCCTTGGCTTACGCAT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGTTGATCCACGGCTTGCGCAT
* **
23578768 TCTG-TCTCTCCGGCCGATTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
66 TCTGCT-TCTCCGACCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
*
23578832 TTCATTCCATGCCTAAGCA
130 TTCATTCCATGTCTAAGCA
23578851 TACGGAGTTC
Statistics
Matches: 248, Mismatches: 51, Indels: 13
0.79 0.16 0.04
Matches are distributed among these distances:
157 5 0.02
158 120 0.48
159 121 0.49
160 2 0.01
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.24
Consensus pattern (160 bp):
GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGTTGATCCACGGCTTGCGCAT
TCTGCTTCTCCGACCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCACAGGACTGAACC
Found at i:23578808 original size:158 final size:156
Alignment explanation
Indices: 23578347--23578839 Score: 504
Period size: 158 Copynumber: 3.1 Consensus size: 156
23578337 CCCAGTCTAA
* * * *
23578347 GCATACAGAGTTCATTCCCAGTCCAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-AGACTGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * * *
23578412 GCACGTAGGGGGGACCGGGTTGATCCCCGACTTGTGCATTCTACCTCTCCGATCGGCTGAGCGCC
65 GCACGCAAGGGGGACCGGGTTGATCCACGGCTTGCGCATTCT-GCTCTCCGACCGGCTGAACGCC
* * *
23578477 AGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * * **
23578505 GCATAGGGAGTTCATT-CTATGTCTAAGCCCCAG-TTGAACCGAGGGTTGTGGTAGTGGGATCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG--ATAGACTGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * *
23578568 TAGCACGCAGAGGGGGACCGGGTCGATCCACGGCTTGCGCATTATGCTTCTCCAACCGGCTCAAT
63 CAGCACGCA-AGGGGGACCGGGTTGATCCACGGCTTGCGCATTCTGC-TCTCCGACCGGCTGAAC
* *
23578633 GCCCGGACGCTCGTTTCATGGGTTGACTTAG
126 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
23578664 GCATACGGAGTTCATTCCCAGTCTAAGATAGGACTGGACCGAGGGTTGTAGCAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATA-GACTGGACCGAGGGTTGTGGCAGCAGGATCGACA
* ** ** * * **
23578729 GCATGCAAGGGGGACCAAGTTGATCCTTGGCTTACGCATTCTGTCTCTCCGGCCGATTGAACGCC
65 GCACGCAAGGGGGACCGGGTTGATCCACGGCTTGCGCATTCTG-CTCTCCGACCGGCTGAACGCC
23578794 CGCACGCTCGTTTCATGGGTTGGCTTAG
129 CGCACGCTCGTTTCATGGGTTGGCTTAG
23578822 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
23578840 ATGCCTAAGC
Statistics
Matches: 266, Mismatches: 60, Indels: 18
0.77 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 139 0.52
159 122 0.46
160 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATAGACTGGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGCAAGGGGGACCGGGTTGATCCACGGCTTGCGCATTCTGCTCTCCGACCGGCTGAACGCCCG
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:23579239 original size:26 final size:26
Alignment explanation
Indices: 23579203--23579255 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23579193 GTTGACTTAG
23579203 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
23579229 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23579255 G
1 G
23579256 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23579573 original size:886 final size:882
Alignment explanation
Indices: 23578292--23579942 Score: 2164
Period size: 886 Copynumber: 1.9 Consensus size: 882
23578282 CGGCTGAGTG
**
23578292 CCGCACGCTTGTTTCGTGGGTAGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAG
1 CCGCACGCTCATTTCGTGGGTAGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAG
* ** ** *
23578357 TTCATTCCCAGTCCAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGG
66 TTCATTCCCAGTCCAAGATCAGACCAGACCAAGGGTTCCGGCAGCAGGATCGACAGCACGCAGGG
** * * *
23578422 GGGACCGGGTTGATCCCCGACTTGTGCATTCTACCTCTCCGATCGGCTGAGCGCCAGCACGCCCG
131 GGGACCGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGATCGGATGAGCGCCAGCACGCCCA
* ** *
23578487 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAGTTGAACCGAGGGTT
196 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTT
* * * * * * *
23578552 GTGGTAGTGGGATCGATAGCACGCAGAGGGGGACCGGGTCGATCCACGGCTTGCGCATTATGCTT
261 GTGGCAGTGGGACCGATAGCACGCAGAGGGGGACCGAGCCGACCCACGACTTGCGCATTATGCCT
* *
23578617 CTCCAACCGGCTCAATGCCCGGACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
326 CTCCAACCGGCTCAACGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* * *
23578682 CAGTCTAAGATAGGACTGGACCGAGGGTT-G-TAGCAGCAGGATTGACAGCATGCAAGGGGGACC
391 CAGTCTAAGATAGGACCGGACCGAGGGTTCGACAGCAGCAGGATCGACAGCATGCAAGGGGGACC
* * * * *
23578745 AAGTT-GATCCTTGGCTTACGCATTCTGTCTCTCCGGCCGATTGAACGCCCGCACGCTCGTTTCA
456 AA-TTCGATCCCTAGCTTACGCATTCTGCCTCTCCGGCCGACTGAACGCCCGCACGCTCATTTCA
* * *
23578809 TGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGCCTAAGCATACGGAGTTCATTCCCAATCTA
520 TGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GCCTAAGCATACGAAGTTCATTCCCAATCTA
* * *** ** *
23578873 AGATCGGACCAGATCAAGGGTTACGGC-AGCCGGACCAGTAGCAGGATCGACAGCATG-CAGTAG
584 AGATCGGACCAGACCAAGGGTTACAGCAAG-AAAACCAACAGCAGGATCGACAGCACGTC-G-AG
* * * * * * *
23578936 GGGATCGGGTTGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTTG
646 GGGA-CCGGTCGATCCCTAACTTGCACATTCTACCTCTCCGACCGACTGAGCACCCGCACACTCG
23579001 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTT
710 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTT
23579066 ATGGTAGCAAGACCGACAGTGGGATCGGCAGGACGTAGAGAGGGATCGAGCCGATCCTCAGTTCA
775 ATGGTAGCAAGACCGACAGTGGGATCGGCAGGACGTAGAGAGGGATCGAGCCGATCCTCAGTTCA
23579131 CACATTATGCCTTTTTGATCGGCCTCTCCAGTCGATTGAGCGC
840 CACATTATGCCTTTTTGATCGGCCTCTCCAGTCGATTGAGCGC
* **
23579174 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAG
1 CCGCACGCTCATTTCGTGGGTAGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAG
* * * * *
23579239 TTCATTCTCAGTCTAAGATCGGATCGGACCAGACCAAGGGTTCCGGTAGCAGGATTGACAGCATG
66 TTCATTCCCAGTCCAAGATC--A---GACCAGACCAAGGGTTCCGGCAGCAGGATCGACAGCACG
* * * * *
23579304 CA-GGGGGACCGGGCCGATCCCTGGCTTGCGCATTTTACCTCTCCGATCGGATGAGTGCCCGCAC
126 CAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGATCGGATGAGCGCCAGCAC
*
23579368 GGCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAA
191 GCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAA
* * * *
23579433 GTGTTGTGGCAGTGGGACCGATAGCACGCAGAGGGGGACTGAGCCGACCCTCGACTTGTGCATTA
256 GGGTTGTGGCAGTGGGACCGATAGCACGCAGAGGGGGACCGAGCCGACCCACGACTTGCGCATTA
* * * * * *
23579498 TGCCTCTTCGATCGGCTCAACGTCCGAACGCTTGTTTTATGGGTTGACTTAGGCATACGGAGTTC
321 TGCCTCTCCAACCGGCTCAACGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
*
23579563 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCACCAGGACCAGCAGCAGGATCGACAG
386 ATTCCCAGTCTAAGATAGGACCGGACCGAGGGTT-------C--GA-CAGCAGCAGGATCGACAG
* * * * **
23579628 CATGCAGGGGGGATCGATTCGATCCCTAGCTTATGCATTCTGCCTCTCCGGTTGACTGAACGCCC
441 CATGCAAGGGGGACCAATTCGATCCCTAGCTTACGCATTCTGCCTCTCCGGCCGACTGAACGCCC
*
23579693 GCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTT
506 GCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGCCTAAGCATACGAAGTT
* * * * * *
23579758 CATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAAGAAAACCAACAGTAGGATCGACA
571 CATTCCCAATCTAAGATCGGACCAGACCAAGGGTTACAGCAAGAAAACCAACAGCAGGATCGACA
* * *** * *
23579823 GCACGTCGGGGGGACCGGTCGATCCCTAACTTGCACATTCTACCTCTCTGGTTGGCTGAGCGCCC
636 GCACGTCGAGGGGACCGGTCGATCCCTAACTTGCACATTCTACCTCTCCGACCGACTGAGCACCC
* * *
23579888 GCACACTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGC
701 GCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
23579943 ATACCGGAGT
Statistics
Matches: 648, Mismatches: 100, Indels: 28
0.84 0.13 0.04
Matches are distributed among these distances:
882 78 0.12
884 1 0.00
886 255 0.39
887 32 0.05
896 91 0.14
897 7 0.01
898 178 0.27
899 6 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (882 bp):
CCGCACGCTCATTTCGTGGGTAGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAG
TTCATTCCCAGTCCAAGATCAGACCAGACCAAGGGTTCCGGCAGCAGGATCGACAGCACGCAGGG
GGGACCGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGATCGGATGAGCGCCAGCACGCCCA
TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTT
GTGGCAGTGGGACCGATAGCACGCAGAGGGGGACCGAGCCGACCCACGACTTGCGCATTATGCCT
CTCCAACCGGCTCAACGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATAGGACCGGACCGAGGGTTCGACAGCAGCAGGATCGACAGCATGCAAGGGGGACC
AATTCGATCCCTAGCTTACGCATTCTGCCTCTCCGGCCGACTGAACGCCCGCACGCTCATTTCAT
GGGTTGACTTAGGCATACGGAGTTCATCCCCAGCCTAAGCATACGAAGTTCATTCCCAATCTAAG
ATCGGACCAGACCAAGGGTTACAGCAAGAAAACCAACAGCAGGATCGACAGCACGTCGAGGGGAC
CGGTCGATCCCTAACTTGCACATTCTACCTCTCCGACCGACTGAGCACCCGCACACTCGTTTCAT
GGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTATGGTA
GCAAGACCGACAGTGGGATCGGCAGGACGTAGAGAGGGATCGAGCCGATCCTCAGTTCACACATT
ATGCCTTTTTGATCGGCCTCTCCAGTCGATTGAGCGC
Found at i:23579750 original size:26 final size:26
Alignment explanation
Indices: 23579720--23579772 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23579710 GTTGACTTAG
*
23579720 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
23579746 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
23579772 G
1 G
23579773 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:23579956 original size:196 final size:196
Alignment explanation
Indices: 23579550--23579970 Score: 560
Period size: 196 Copynumber: 2.1 Consensus size: 196
23579540 GTTGACTTAG
* * ** *
23579550 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCACCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAACAAAACCAACA
* * * * ** *
23579615 GCAGGATCGACAGCATGCAGGGGGGATCGATTCGATCCCTAGCTTATGCATTCTGCCTCTCCGGT
66 GCAGGATCGACAGCACGCAGGGGGGACCGAGTCGATCCCTAACTTACACATTCTACCTCTCCGGT
*
23579680 TGACTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
131 TGACTGAACGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
23579745 A
196 A
* * *
23579746 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAAGAAAACCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAACAAAACCAACA
* * *
23579811 GTAGGATCGACAGCACGTC-GGGGGGACCG-GTCGATCCCTAACTTGCACATTCTACCTCTCTGG
66 GCAGGATCGACAGCACG-CAGGGGGGACCGAGTCGATCCCTAACTTACACATTCTACCTCTCCGG
* * * * * * *
23579874 TTGGCTGAGCGCCCGCACACTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTT
130 TTGACTGAACGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTC
23579938 TAA
194 TAA
23579941 GCATACCGGAGTTCATTCCCAGTCTAAGAT
1 GCATA-CGGAGTTCATTCCCAGTCTAAGAT
23579971 TTTGAGCCAC
Statistics
Matches: 195, Mismatches: 27, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
194 3 0.02
195 87 0.45
196 104 0.53
197 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (196 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAACAAAACCAACA
GCAGGATCGACAGCACGCAGGGGGGACCGAGTCGATCCCTAACTTACACATTCTACCTCTCCGGT
TGACTGAACGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
A
Found at i:23579968 original size:27 final size:26
Alignment explanation
Indices: 23579915--23579968 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 26
23579905 GTTGGCTTAG
*
23579915 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
23579941 GCATACCGGAGTTCATTCCCA-GTCTAA
1 GCATA-CGGAGTTCATT-CCATGTCTAA
23579968 G
1 G
23579969 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 5 0.20
27 17 0.68
28 3 0.12
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:23580560 original size:22 final size:22
Alignment explanation
Indices: 23580535--23580616 Score: 146
Period size: 22 Copynumber: 3.7 Consensus size: 22
23580525 CTTCCTCATC
23580535 CTCATGGAACGGCTTGAGCATG
1 CTCATGGAACGGCTTGAGCATG
23580557 CTCATGGAACGGCTTGAGCATG
1 CTCATGGAACGGCTTGAGCATG
* *
23580579 CTTATGGAACGGCTTGAGCATC
1 CTCATGGAACGGCTTGAGCATG
23580601 CTCATGGAACGGCTTG
1 CTCATGGAACGGCTTG
23580617 CCTACCCTCT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 57 1.00
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.24
Consensus pattern (22 bp):
CTCATGGAACGGCTTGAGCATG
Found at i:23581716 original size:26 final size:26
Alignment explanation
Indices: 23581679--23581731 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23581669 GTTAAGTTAG
23581679 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
23581705 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
23581731 G
1 G
23581732 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:23582008 original size:159 final size:157
Alignment explanation
Indices: 23581705--23582209 Score: 477
Period size: 159 Copynumber: 3.2 Consensus size: 157
23581695 CCCAGTCTAA
* * * * * * * *
23581705 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCGGACCGGATCGAGGGTTGC-GACAATAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCAGATCGAGGGTTGCAG-CAGTAGGACCA
* * * *
23581767 ATAGCACG-CAGGGGGCACCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTTCGGCCGGTTGAG
64 ACAGCACGTAAGGGGG-ACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAG
* *
23581831 CGCCTGTACGCCTGTTTCATGGGTTGGGTTAG
128 CGCC-GTACGTC-GTTTCATGGGTTGGCTTAG
* * * * ** * *
23581863 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-GGA-CTGAGGGTTGTGGCAGTGGGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGATC-GAGGGTTGCAGCAGTAGGACCAA
* *
23581926 CAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGGCTCAGC
65 CAGCACGTA-AGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGC
* * * *
23581991 GTCCGCACGGTCATTTCATGGGTTGACTTAT
129 G-CCGTAC-GTCGTTTCATGGGTTGGCTTAG
* * * *
23582022 GCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGATCGAGGGTTGCAGTAGTAGGATCAA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCAGATCGAGGGTTGCAGCAGTAGGACCAA
* * * * *
23582085 CAGCACGTAAGGGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGC
65 CAGCACGTAA-GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGC
* *
23582150 GCCCGTACACTCGTTTCGTGGGTTGGCTTAG
129 G-CCGTAC-GTCGTTTCATGGGTTGGCTTAG
*
23582181 GCATACGGAGTTCATTCTATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
23582210 TACAGAGTTC
Statistics
Matches: 282, Mismatches: 51, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
157 4 0.01
158 54 0.19
159 209 0.74
160 15 0.05
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGATCGAGGGTTGCAGCAGTAGGACCAAC
AGCACGTAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGC
CGTACGTCGTTTCATGGGTTGGCTTAG
Found at i:23582217 original size:26 final size:26
Alignment explanation
Indices: 23582181--23582233 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23582171 GTTGGCTTAG
*
23582181 GCATACGGAGTTCATT-CTATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
23582207 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
23582233 G
1 G
23582234 ATTCTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:23582930 original size:26 final size:25
Alignment explanation
Indices: 23582901--23582958 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
23582891 GTTGACTTAG
* *
23582901 GCATACGGCGTTCATCCCCGGTCTAA
1 GCAT-CGGAGTTCATCCCCAGTCTAA
* *
23582927 GCATTGGAGTTCATTCCCAGTCTAA
1 GCATCGGAGTTCATCCCCAGTCTAA
23582952 G-ATCGGA
1 GCATCGGA
23582959 CCGGACTGAG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 5 0.19
25 18 0.67
26 4 0.15
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (25 bp):
GCATCGGAGTTCATCCCCAGTCTAA
Found at i:23583442 original size:159 final size:156
Alignment explanation
Indices: 23583214--23583615 Score: 401
Period size: 159 Copynumber: 2.5 Consensus size: 156
23583204 CTGGCTTGCA
* * * * * *
23583214 CATTTTGCCTCTCCGGTCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGG
1 CATTATGCCTCTCCGGTCG-CTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGA
** ** *
23583279 AGTTCATTCCATGTCTAAGCCCCAACTGGACCGAGGGTTGTGGCAGCGGGACCGATAAAATGCAG
65 AGTTCATTCC-TGTCTAAGCCCCAACCAGACCGAGGGTTACGGCAGCGGGACCGATAAAACGCAG
* *
23583344 AGGGGGACCGGGCCGATCCCCGGCTTACG
129 -GGGGGACCGGACCGATCCCCGACTTACG
* * * * * *
23583373 TATTATGCCTCTCCAGTCAGCTCAGCCCCCGCACGCTCATTT-AGTGGGTTGACTTAGGCTTACG
1 CATTATGCCTCTCCGGTC-GCTGAGCACCCGCACGCTCATTTCA-TGGGTTGGCTTAGGCATACG
** ** * ** * **
23583437 AAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTACGGCTGTTGGATCGATAGCACGCA
64 AAGTTCATTCCT-GTCTAAGCCCCAACCAGACCGAGGGTTACGGCAGCGGGACCGATAAAACGCA
* *
23583502 GGGGGGACCGGACCGATCCTCTACTTACG
128 GGGGGGACCGGACCGATCCCCGACTTACG
* * ** *
23583531 CGTTCTGCCTCTTTGGTCGGCTGAGCACCCTCACGCTCATTTCATGGGTTGGCTTAGGCATACGA
1 CATTATGCCTCTCCGGTC-GCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGA
23583596 AGTTCATTCCGTGTCTAAGC
65 AGTTCATTCC-TGTCTAAGC
23583616 ATATAGAGTT
Statistics
Matches: 195, Mismatches: 43, Indels: 11
0.78 0.17 0.04
Matches are distributed among these distances:
158 94 0.48
159 100 0.51
160 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (156 bp):
CATTATGCCTCTCCGGTCGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAA
GTTCATTCCTGTCTAAGCCCCAACCAGACCGAGGGTTACGGCAGCGGGACCGATAAAACGCAGGG
GGGACCGGACCGATCCCCGACTTACG
Found at i:23583618 original size:26 final size:26
Alignment explanation
Indices: 23583588--23583640 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
23583578 GTTGGCTTAG
**
23583588 GCATACGA-AGTTCATTCCGTGTCTAA
1 GCATA-GAGAGTTCATTCCCAGTCTAA
*
23583614 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATAGAGAGTTCATTCCCAGTCTAA
23583640 G
1 G
23583641 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATAGAGAGTTCATTCCCAGTCTAA
Found at i:23584345 original size:159 final size:159
Alignment explanation
Indices: 23584056--23584486 Score: 359
Period size: 159 Copynumber: 2.7 Consensus size: 159
23584046 TAGCATACAG
* * * * * *
23584056 GGGGGACCAGGCCAATCCTCGGCTTATGCATTCTGCCTCTTCGATCGGCTGAGCGTCCGCACGCC
1 GGGGGACCAGGCCAATCCTCGGCTTACGCATTATGCCTCTTCGACCCGCTCAGCGCCCGCACGCC
* * * *
23584121 CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACCGAAGG
66 CATTTCATGGGTTGACTTAGGCAAAGGGAGTTCATTCCATGTCTAAGCACCAGCAGGACCAAAGG
23584186 TTATGGCAGCGGGACCGACAGTATGTAGA
131 TTATGGCAGCGGGACCGACAGTATGTAGA
* * * * * * *
23584215 GGGGGATCAGGTCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCCCGTTCAGCGCCCGCACGCT
1 GGGGGACCAGGCCAATCCTCGGCTTACGCATTATGCCTCTTCGACCCGCTCAGCGCCCGCACGCC
* * * ** *
23584280 CATTTCGTGGGTTGACTTATGCAAATGGAGTTCATTCCCA-GTCTAAG-ATTAGACTGGACCAAA
66 CATTTCATGGGTTGACTTAGGCAAAGGGAGTTCATT-CCATGTCTAAGCACCAG-CAGGACCAAA
** ** * * * * *
23584343 GGTTGCGGCAGCAAGATCGATAGCACGCAG-
129 GGTTATGGCAGCGGGACCGACAGTATGTAGA
* * * * * * * * * *
23584373 GGGGGACC-GAGCCGATCCTCGACTTGCACATTCTGCCTCTCCGA-CCGACTGAGTGCTCGTACG
1 GGGGGACCAG-GCCAATCCTCGGCTTACGCATTATGCCTCTTCGACCCG-CTCAGCGCCCGCACG
* * * * * *
23584436 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
64 CCCATTTCATGGGTTGACTTAGGCAAAGGGAGTTCATTCCATGTCTAAGCA
23584487 TACGGAGTTC
Statistics
Matches: 217, Mismatches: 49, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
157 7 0.03
158 87 0.40
159 120 0.55
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GGGGGACCAGGCCAATCCTCGGCTTACGCATTATGCCTCTTCGACCCGCTCAGCGCCCGCACGCC
CATTTCATGGGTTGACTTAGGCAAAGGGAGTTCATTCCATGTCTAAGCACCAGCAGGACCAAAGG
TTATGGCAGCGGGACCGACAGTATGTAGA
Found at i:23584487 original size:26 final size:26
Alignment explanation
Indices: 23584458--23584510 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23584448 GTTGGCTTAG
23584458 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23584484 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23584510 G
1 G
23584511 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23585567 original size:159 final size:155
Alignment explanation
Indices: 23585211--23585569 Score: 332
Period size: 159 Copynumber: 2.3 Consensus size: 155
23585201 CTATGCTTAT
* *
23585211 GGAGTTCATTCCCAGTCTAAAATCAGACCGGA-TCGAGGGTTACGATAGTAAGATCGACAGCACG
1 GGAGTTCATT-CCAGTCTAAGATCAGACCGGACT-GAGGGTT--GATAGTAAGACCGACAGCACG
* * * * * * *
23585275 CAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCTAGCAA
62 CAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAACACCAGCAA
* * *
23585340 GCCCATTTCGTGGGTTGGCTTAGGCATAG
127 GCCCATTTCATGGGTTGACTTAGGCATAC
* ** * * *
23585369 GGAGTTCATTCCATGTCTAAGCTAT-AG-TCAAACCGAGGGTTG-TGGTAACGGGACCGATAGCA
1 GGAGTTCATTCCA-GTCTAAG--ATCAGACCGGACTGAGGGTTGATAGTAA---GACCGACAGCA
* * * * * *
23585431 TGCAGAGGGGGACCGAGTCGGTCCCCGGCTTGCGCATTATGCCTTTCTGACCGGCTCAACACCCG
60 CGCAG-GGGGGACCGAGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAACACCAG
* *
23585496 -AACGCTCGTTTCATGGGTTGACTTAGGCATAC
124 CAA-GCCCATTTCATGGGTTGACTTAGGCATAC
23585528 GGAGTTCATTCACAGTCTAAGATCAGACCGGACTGAGGGTTG
1 GGAGTTCATTC-CAGTCTAAGATCAGACCGGACTGAGGGTTG
23585570 CGACAGCAAG
Statistics
Matches: 159, Mismatches: 30, Indels: 23
0.75 0.14 0.11
Matches are distributed among these distances:
155 5 0.03
156 1 0.01
157 5 0.03
158 42 0.26
159 102 0.64
160 4 0.03
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (155 bp):
GGAGTTCATTCCAGTCTAAGATCAGACCGGACTGAGGGTTGATAGTAAGACCGACAGCACGCAGG
GGGGACCGAGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAACACCAGCAAGCCC
ATTTCATGGGTTGACTTAGGCATAC
Found at i:23585893 original size:26 final size:26
Alignment explanation
Indices: 23585863--23585915 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23585853 GTTGACTTAG
23585863 GCATAC-GAGGTTCATCCCCAGTCTAA
1 GCATACGGA-GTTCATCCCCAGTCTAA
*
23585889 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23585915 G
1 G
23585916 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23586451 original size:26 final size:26
Alignment explanation
Indices: 23586414--23586466 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23586404 CTTGGCTTAG
*
23586414 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
23586440 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
23586466 G
1 G
23586467 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:23587170 original size:26 final size:26
Alignment explanation
Indices: 23587134--23587186 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23587124 GTTGACTTAG
*
23587134 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
23587160 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
23587186 G
1 G
23587187 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:23587515 original size:158 final size:157
Alignment explanation
Indices: 23587160--23587542 Score: 414
Period size: 158 Copynumber: 2.4 Consensus size: 157
23587150 CCCAGTCTAA
* * * * * *
23587160 GCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAAGGTTATGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGACCGACA
* * * * * * *
23587225 GCACGTAGGGAGGATTGAGTCGATCCCCGGCTTACGCATCTGCCTCTTCGCCGGACTGAGCACCC
66 GCACGCAGGGAGGATCGAGTCGATCCCCAGCTTACGCATATGCCTCTTAGCCAGACTCAGCACCC
* *
23587290 GTAAGCCTGTTTCATGGGTTGGCTTAG
131 GCAAGCCTGTTTCATGGGTTGACTTAG
* * * * **
23587317 GCATAGGGAGTTCATT-CCATGTCCAAG-CCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGA
1 GCATACGGAGTTCATTCCCA-ATCTAAGATCGGA-CCGGACCGAGGGTTGTGGCAGCAGGACCGA
* * * *
23587380 CAGCACGCAGAGGGGGATCGAGTTGATCCCCAGCTTACGTATTATGCCTCTCTAGTCAG-CTCAG
64 CAGCACGCAG-GGAGGATCGAGTCGATCCCCAGCTTACGCA-TATGCCTCT-TAGCCAGACTCAG
* * *
23587444 CGCCCGCACGCTTG-TTCATGGGTTGACTTAG
126 CACCCGCAAGCCTGTTTCATGGGTTGACTTAG
* * *
23587475 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGACCAACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGACCGACA
23587540 GCA
66 GCA
23587543 GCATCAGTAG
Statistics
Matches: 183, Mismatches: 36, Indels: 13
0.79 0.16 0.06
Matches are distributed among these distances:
156 5 0.03
157 54 0.30
158 93 0.51
159 27 0.15
160 4 0.02
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGACCGACA
GCACGCAGGGAGGATCGAGTCGATCCCCAGCTTACGCATATGCCTCTTAGCCAGACTCAGCACCC
GCAAGCCTGTTTCATGGGTTGACTTAG
Found at i:23588569 original size:25 final size:25
Alignment explanation
Indices: 23588541--23588595 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
23588531 TTTTTCTAAA
*
23588541 AAAATTTTAAAAAATCTTGAACCAC
1 AAAATTTTAAAAAATCTCGAACCAC
*
23588566 AAAAATTTAAAAAATCTCGAACCAC
1 AAAATTTTAAAAAATCTCGAACCAC
23588591 AAAAT
1 AAAAT
23588596 AGAAAATGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.56, C:0.16, G:0.04, T:0.24
Consensus pattern (25 bp):
AAAATTTTAAAAAATCTCGAACCAC
Found at i:23588601 original size:24 final size:25
Alignment explanation
Indices: 23588549--23588601 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
23588539 AAAAAATTTT
* **
23588549 AAAAAATCTTGAACCACAAAAATTT
1 AAAAAATCTCGAACCACAAAAATAG
23588574 AAAAAATCTCGAACCAC-AAAATAG
1 AAAAAATCTCGAACCACAAAAATAG
23588598 AAAA
1 AAAA
23588602 TGGGTCGTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.60, C:0.17, G:0.06, T:0.17
Consensus pattern (25 bp):
AAAAAATCTCGAACCACAAAAATAG
Found at i:23588831 original size:26 final size:26
Alignment explanation
Indices: 23588801--23588853 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23588791 GTTGACTTAG
23588801 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
23588827 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23588853 G
1 G
23588854 ATGGTTGCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23589344 original size:158 final size:156
Alignment explanation
Indices: 23589084--23589642 Score: 484
Period size: 158 Copynumber: 3.5 Consensus size: 156
23589074 CTGGCTTGTG
** * * **
23589084 CATTATGCCTCTTCGATCGGTTGAGCACCCACACGCTCC-TTTCGGGGGTTGACTTAGGCATACG
1 CATTATGCCTCTTCGATCGACTGAGCGCCCGCACGC-CCATTTCATGGGTTGACTTAGGCATACG
* * *
23589148 GAGTTCATTCCCAGTCTAAGATCTGATCGGACCGAGGGTTGCGGTAACAGGATCGACAGCATGCA
65 GAGTTCATTCCCAGTCTAAGATCAGCT-GGACCGAGGGTTGTGGTAACAGGATCGACAGCATGCA
* * *
23589213 GGGGGGATCGGGTCGATCCCCGCCTTACA
129 GGGGGGA-CGAGTCGATCCCCGACTTGCA
* * * *
23589242 CATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGG
1 CATTATGCCTCTTCGATCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACGG
** ** * *
23589307 AGTTCATT-CCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGT-AGTGAGATTGGCAGCATGC
66 AGTTCATTCCCA-GTCTAAG-ATCAGCTGGACCGAGGGTTGTGGTAACAG-GATCGACAGCATGC
*
23589370 AGAGGGGGACTGAGTCGATCCCCGACTTGCG
128 AG-GGGGGAC-GAGTCGATCCCCGACTTGCA
* * * * * * *
23589401 CATTATGCCTCTTCGGTC-AGCTCAGCGCCTGAACACTCATTTCGTGGGTTGACTTAGGCATACG
1 CATTATGCCTCTTCGATCGA-CTGAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACG
* * * * * * * * *
23589465 AATGATCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATAGCAGCAGGATCGATAGCATCC
65 GA-GTTCATTCCCAGTCTAAGATCAG-CTGGACCGAGGGTTGTGGTAACAGGATCGACAGCATGC
* *
23589530 AGGGGGGACCGAG-CTGAT-CTCGGCTTGCA
128 AGGGGGGA-CGAGTC-GATCCCCGACTTGCA
* * * * * * * * * *
23589559 CATTCTGCCTCTTCAACCGACTGAGTGCCTGCATGCTCGTTTCATGGGTTGGCTTAGGCATACAG
1 CATTATGCCTCTTCGATCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACGG
23589624 AGTTCATT-CCATGTCTAAG
66 AGTTCATTCCCA-GTCTAAG
23589643 CATGCCGAGT
Statistics
Matches: 319, Mismatches: 67, Indels: 31
0.76 0.16 0.07
Matches are distributed among these distances:
156 3 0.01
157 20 0.06
158 158 0.50
159 93 0.29
160 41 0.13
161 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (156 bp):
CATTATGCCTCTTCGATCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGCTGGACCGAGGGTTGTGGTAACAGGATCGACAGCATGCAGG
GGGGACGAGTCGATCCCCGACTTGCA
Found at i:23589570 original size:317 final size:318
Alignment explanation
Indices: 23588933--23589643 Score: 838
Period size: 317 Copynumber: 2.2 Consensus size: 318
23588923 CTCCGGCTGG
*
23588933 CTGAGTGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 CTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
* *
23588998 CCCAGCCGAACCTAGGGTTGTGGCAGCAAGACCGGTAGCGGGATTGGCAGCACGCAGAGGGGGAC
66 CCCAGCCGAACCGAGGGTTGT---------A--GGTAGCGAGATTGGCAGCACGCAGAGGGGGAC
* * * * * * * *
23589063 CGAGCTGATCCCTGGCTTGTGCATTATGCCTCTTCGATCGGTTGAGCACCCACACGCTCCTTTCG
120 CGAGCTGATCCCCGACTTGCGCATTATGCCTCTTCGATCAGCTCAGCACCCACACACTCATTTCG
* * * * * * *
23589128 GGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGATCGGACCGAGGGTTGCGGT
185 GGGGTTGACTTAGGCATACGAAGATCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACAGC
* * * *
23589193 AACAGGATCGACAGCATGCAGGGGGGATCGGGTCGATCCCCGCCTTACACATTCTGCCTCTCCGA
250 AACAGGATCGACAGCATCCAGGGGGGACCGGCTCGATCCCCGCCTTACACATTCTGCCTCTCCAA
*
23589258 TCGA
315 CCGA
* * **
23589262 CTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 CTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
* * * * *
23589327 CCCAGCTGGACCGAGGGTTGT-GGTAGTGAGATTGGCAGCATGCAGAGGGGGACTGAG-TCGATC
66 CCCAGCCGAACCGAGGGTTGTAGGTAGCGAGATTGGCAGCACGCAGAGGGGGACCGAGCT-GATC
* * * *
23589390 CCCGACTTGCGCATTATGCCTCTTCGGTCAGCTCAGCGCCTGA-ACACTCATTTCGTGGGTTGAC
130 CCCGACTTGCGCATTATGCCTCTTCGATCAGCTCAGCACC-CACACACTCATTTCGGGGGTTGAC
* *
23589454 TTAGGCATACGAATGATCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATAGCAGCAGGAT
194 TTAGGCATACGAA-GATCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACAGCAACAGGAT
* * * * *
23589519 CGATAGCATCCAGGGGGGACCGAGCT-GAT-CTCGGCTTGCACATTCTGCCTCTTCAACCGA
258 CGACAGCATCCAGGGGGGACCG-GCTCGATCCCCGCCTTACACATTCTGCCTCTCCAACCGA
* * *
23589579 CTGAGTGCCTGCATGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 CTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
23589644 ATGCCGAGTT
Statistics
Matches: 328, Mismatches: 50, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
316 1 0.00
317 181 0.55
318 66 0.20
319 2 0.01
329 78 0.24
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (318 bp):
CTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
CCCAGCCGAACCGAGGGTTGTAGGTAGCGAGATTGGCAGCACGCAGAGGGGGACCGAGCTGATCC
CCGACTTGCGCATTATGCCTCTTCGATCAGCTCAGCACCCACACACTCATTTCGGGGGTTGACTT
AGGCATACGAAGATCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACAGCAACAGGATCGA
CAGCATCCAGGGGGGACCGGCTCGATCCCCGCCTTACACATTCTGCCTCTCCAACCGA
Found at i:23589864 original size:26 final size:26
Alignment explanation
Indices: 23589814--23589864 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
23589804 TGACTTAGGG
*
23589814 ATACGGAGTTCATCCCCGGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
* *
23589840 ATACGGAGTTCATTCCCAGTTTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
23589865 ATCAAACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:23590196 original size:159 final size:159
Alignment explanation
Indices: 23589978--23590340 Score: 344
Period size: 159 Copynumber: 2.3 Consensus size: 159
23589968 CACATGGCCG
* * * * ** * *
23589978 TTTCGT-GTGTTGGCTTAGGCATAGGGAGTTGATTCCATGTCTAAG-CCCCAGCTGGACCGAAGG
1 TTTCGTAG-GTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCGAACCGAAGG
** ** * * **
23590041 TTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGACCGGGCCGAT-CTCTGGCTTGGGCATTATG
64 TTGCAGCAGCAGGACCGACAGCACGAAGAGGGGGACCGAGCCGATCCTC-GGCTTACGCATTAT-
* * *
23590105 CAGCT-T-TGG-CTGGCTCAGCACCTGCACGCTCA
127 -AGCTCTCCGGTC-GACTCAGCACCCGCACGCTCA
* * *
23590137 TTTCGTTGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAGATCGGACCGAACCGAGGGT
1 TTTCGTAGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGAACCGAAGGT
** * * *
23590201 TGCAGCAGCAGGATTGACAGCACGAAGGGGGGGACCGAGCCGTTCCTCGGCTTACGCATTCTAGC
65 TGCAGCAGCAGGACCGACAGCACGAAGAGGGGGACCGAGCCGATCCTCGGCTTACGCATTATAGC
* *
23590266 TCTCCGGTCGACTGAGCACCCGCACGCTTA
130 TCTCCGGTCGACTCAGCACCCGCACGCTCA
*
23590296 TTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 TTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
23590341 CATACGGAGT
Statistics
Matches: 166, Mismatches: 30, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
157 4 0.02
158 4 0.02
159 148 0.89
160 10 0.06
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (159 bp):
TTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGGACCGAACCGAAGGTT
GCAGCAGCAGGACCGACAGCACGAAGAGGGGGACCGAGCCGATCCTCGGCTTACGCATTATAGCT
CTCCGGTCGACTCAGCACCCGCACGCTCA
Found at i:23590350 original size:26 final size:26
Alignment explanation
Indices: 23590314--23590366 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23590304 GTTGGCTTAG
23590314 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23590340 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23590366 G
1 G
23590367 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23590716 original size:26 final size:26
Alignment explanation
Indices: 23590680--23590732 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23590670 GTTGACTTAG
*
23590680 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
23590706 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23590732 G
1 G
23590733 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23591208 original size:159 final size:157
Alignment explanation
Indices: 23590706--23591199 Score: 478
Period size: 159 Copynumber: 3.1 Consensus size: 157
23590696 CCTAGTCTAA
* *
23590706 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTGCGGTAGCAGGATCGAA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCAAGGGTTGTGGTAGCAGGATC-AA
* * * *
23590770 AGCACACA-GGGGGGA-TCGGGCCGATACTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
64 AGCACACAGGGGGGGACT-GGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
* * * *
23590833 GCCCGCACACCCATTTTATGGGTTGGCTTAG
128 G-CCTCACGCTCATTTTGTGGGTTGGCTTAG
* ** ** * * *
23590864 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ATTGGACCAAGGGTTGTGGTAGCAAGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCAAGGGTTGTGGTAGCAGGATC-A
* * * * * * * * *
23590927 TAGCACACAGAGGAGGACCGGG-TCGATCCCCTGCTTGCGCATTATGCCTTTCCGGTCGACTCAG
63 AAGCACACAGGGGGGGACTGGGCT-GATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAG
* * *
23590991 CGCCTGCACGCTCATTTTGTGGGTTGACGTAT
127 CGCCT-CACGCTCATTTTGTGGGTTGGCTTAG
* * *
23591023 GCATACGAAGTTAATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGTGGTAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGTAGCAGGATCAA-A
** * *
23591088 GCACGTAGGGGGGGACTGGGCTGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGC
65 GCACACAGGGGGGGACTGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* * * *
23591153 ACTTACGCTCGTTTCGTGGGTTGGTTTAG
130 -CTCACGCTCATTTTGTGGGTTGGCTTAG
23591182 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
23591200 ATGCCTAAGC
Statistics
Matches: 262, Mismatches: 62, Indels: 23
0.76 0.18 0.07
Matches are distributed among these distances:
157 3 0.01
158 58 0.22
159 195 0.74
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGTAGCAGGATCAAAG
CACACAGGGGGGGACTGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
TCACGCTCATTTTGTGGGTTGGCTTAG
Found at i:23592456 original size:26 final size:26
Alignment explanation
Indices: 23592426--23592478 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23592416 GTTGACTTAG
*
23592426 GCATACAAAGTTCATCCCCATTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
** *
23592452 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
23592478 G
1 G
23592479 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:23592817 original size:26 final size:26
Alignment explanation
Indices: 23592781--23592833 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23592771 GTTGACTTAG
23592781 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
23592807 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
23592833 G
1 G
23592834 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23593801 original size:355 final size:361
Alignment explanation
Indices: 23593204--23593883 Score: 842
Period size: 355 Copynumber: 1.9 Consensus size: 361
23593194 AGGACAGGAT
* * * * * *
23593204 CAGGCCGATCCCCGGCTTACACATTTTGCCTCTTCGATCGGCTGAGCGCCCGTATGCTCGTTTCA
1 CAGGCCGATCCCCGGCTTACACATTATGCCTCTCCGATCGACTGAGCGCCCGCACGCTCATTT-A
* * *
23593269 TGCATTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCAAA
65 TGCATTGACTTAGGCATACAGAGTTCATTCCAAGTCTAAGCATACGGAGTTCATTCCCAGACAAA
* * *
23593334 GATCAGACCGGACCGAGGGCTGTGGCAGCAGGACCAGCAGCAGGATCGACAGCACGTAGGGGGGA
130 GATCAGACCGGACAGAGGGCTGT-G--GCA-GACCAGCA-CAGGATCAACAGCACGCAGGGGGGA
** * * * * * *
23593399 TTGGATCGATCCCCGGCTAGCGCATTCTACCTCTCTGGCCAGCTGAGC-GCCTGCATGCTCGTTT
190 CCGGACCGATCCCCAGCTAGCGCATTCTACCACTCTCGCCAGCTGAGCGGCC-GCACGCCCGTTT
* *
23593463 CGTGGGTTGGGTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGAATCGAGGGTTGTG
254 CGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGTG
23593528 GTAGCAGGATCGACAACGGGATTGGCAGCATGCAGAGAGGGAC
319 GTAGCAGGATCGACAACGGGATTGGCAGCATGCAGAGAGGGAC
* *
23593571 CAGGCTGATCCCCGGCTTACTCATTATGCCTCTCCGATCGACTGAGCGCCCGCACGCTCATTT-T
1 CAGGCCGATCCCCGGCTTACACATTATGCCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTAT
* *
23593635 GTAGGTTGACTTAGGCATACAGAGTTCA-TCCTAAGTCTAAGCATACGGAGTTCATTCCCAGACT
66 GCA--TTGACTTAGGCATACAGAGTTCATTCC-AAGTCTAAGCATACGGAGTTCATTCCCAGACA
** *
23593699 AAGATTGGACCGGATAGAGGG-T-T-GCA-A-CAGCA-A-GATCAACAGCACGCAGGGGGGACCG
128 AAGATCAGACCGGACAGAGGGCTGTGGCAGACCAGCACAGGATCAACAGCACGCAGGGGGGACCG
* * * *
23593757 GGCCGATCCCCAGCTTGCGCATTCTGCCACTC-CGCCTGGCTGAGCGGCCGCACGCCCGTTTCGT
193 GACCGATCCCCAGCTAGCGCATTCTACCACTCTCGCC-AGCTGAGCGGCCGCACGCCCGTTTCGT
** ** *
23593821 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGG
257 GGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGTGG
23593884 CAGCGGGTCC
Statistics
Matches: 270, Mismatches: 38, Indels: 22
0.82 0.12 0.07
Matches are distributed among these distances:
354 3 0.01
355 123 0.46
356 4 0.01
358 5 0.02
359 1 0.00
361 3 0.01
365 4 0.01
366 4 0.01
367 123 0.46
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (361 bp):
CAGGCCGATCCCCGGCTTACACATTATGCCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTAT
GCATTGACTTAGGCATACAGAGTTCATTCCAAGTCTAAGCATACGGAGTTCATTCCCAGACAAAG
ATCAGACCGGACAGAGGGCTGTGGCAGACCAGCACAGGATCAACAGCACGCAGGGGGGACCGGAC
CGATCCCCAGCTAGCGCATTCTACCACTCTCGCCAGCTGAGCGGCCGCACGCCCGTTTCGTGGGT
TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGTGGTAGCAG
GATCGACAACGGGATTGGCAGCATGCAGAGAGGGAC
Found at i:23594083 original size:159 final size:156
Alignment explanation
Indices: 23593675--23594177 Score: 469
Period size: 159 Copynumber: 3.2 Consensus size: 156
23593665 CTAAGTCTAA
* * * ** * * *
23593675 GCATACGGAGTTCATTCCCA-GACTAAGATTGGACCGGATAGAGGGTTGCAACAGCAAGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCAGGATCGAC
* * * * *
23593739 AGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCACTCCGCCTGGCTGAGCGG
65 AGCA-GCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGCC-GGCTAAGCGC
*
23593804 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** ** *
23593833 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCGGACCGAGGGTTGTGGCAGC-GGGTCCTG
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-TCGGACCGAGGGTTGCAGCAGCAGGAT-C-G
** * *
23593896 TAACA-CA-CAGAGGGGGATTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCA
63 --ACAGCAGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCG-CCGGCTAA
* * * *
23593959 GCGCCCGTACGCTCGTTTCATGGGTTGACTTAT
124 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
23593992 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCAGGATCGAC
* * * * * **
23594056 AGCATGTAGGGGCGGACCGGGCTGATCCCTGGCTTACGCATTCTGCCTCTCTGGCTTGCTAAGCG
65 AGCA-GCAGGGG-GGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT-TCGCCGGCTAAGCG
* *
23594121 CCTGCACGCTCGTTTCGTGGTTTGGCTTAG
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
23594151 GCATACAGATTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
23594178 CATACGGAGT
Statistics
Matches: 273, Mismatches: 55, Indels: 33
0.76 0.15 0.09
Matches are distributed among these distances:
156 3 0.01
157 8 0.03
158 48 0.18
159 197 0.72
160 14 0.05
161 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCAGGATCGACA
GCAGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGCCGGCTAAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:23594178 original size:869 final size:856
Alignment explanation
Indices: 23592392--23594205 Score: 2224
Period size: 869 Copynumber: 2.1 Consensus size: 856
23592382 CGGTCTACTG
* * * * *
23592392 AGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCCAT-TCTAAGCAT
1 AGCGCCCGCACGCTCGTTTCATGGATTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCAT
* * * * *
23592456 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTAGCAGCAGGATCGGCAGCAC
65 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGCTGTAGCAGCAGGACCGGCAGCAC
* * ** *
23592521 ACAGGAGGGGAGCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGTGCCTGC
130 ACAGGAGGGGAGCAGGTCGATCCCCGACTAGCGCATTCTACCTCTCCGGCCAGCTGAGCGCCTGC
* ** * *
23592586 GTGCTCGTTTCGTGGGTTGGCTTAGGCATGTAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
195 ATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGAACC
* * * * *
23592651 GAGGGTTGTTGCAGCAGGACCGAAAGCGGGATCGACAGCACATAGAGGGGGATCGGGCTGATCCC
260 GAGGGTTGTGGCAGCAGGACCGAAAGCGGGATCGACAGCACACAGAGAGGGACCAGGCTGATCCC
* * * * *
23592716 CAGCTTGCACATTATGCCTCCCGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
325 CAGCTTACACATTATGCCTCCCGACCGACTGAACGCCCGCACGCTCATTTCGTAGGTTGACTTAG
* *
23592781 GCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
390 GCATACAGAGTTCATCCCAAGTCTAAGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGAC
* ** ** * * * *
23592846 CGAGGGTTACGGCAGCAAGATCGGCAGGACAGAGGGGGGACTAGGTCGATCCCCGGCTTACGCAT
455 AGAGGGTTACAACAGCAAGATCAACAGCACAGAGGGGGGACCAGGCCGATCCCCAGCTTACGCAT
*
23592911 TCTGCCTCTCCGATCGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGCTTAGGCATAGGGAGTT
520 TCTGCCACTCCGATCGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGCTTAGGCATAGGGAGTT
* *
23592976 CATTCCATGTCTAAGCCACAATCGAACCGAGGGTTCTGGTAGCGGGATCGGTAACACGCAGAGGG
585 CATTCCATGTCTAAGCCACAATCGAACCGAGGGTTCTGGCAGCGGGATCGGTAACACACAGAGGG
* * * **
23593041 GGACCAAGCCGATCCTCGACTTGCGCATTATGCCTCTTCGGCCAACTTAGCGCTTGCACGCTCGT
650 GGACCAAGCCGATCCCCGACTTGCGCATTATGCCTCTTCGACCAACTCAGCGCCCGCACGCTCGT
* * * *
23593106 TTCGTGGGTTGAGTTAGGTATACGAAGTTCATTCCCAGTCTAAGATCGGGCCGCACCAAGAGTTG
715 TTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGGCAGCACCAAGAGTTG
** * *
23593171 TGGCAGCAAGATCGACAGCACACAGGACAGGATCAGGCCGATCCCCGGCTTACACATTTTGCCTC
780 CAGCAGCAAGATCGACAGCACACAGGACAGGACCAGGCCGATCCCCGGCTTACACATTCTGCCTC
*
23593236 TTCGATCGGCTG
845 TTCGATCGGCTA
* * *
23593248 AGCGCCCGTATGCTCGTTTCATGCATTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATA
1 AGCGCCCGCACGCTCGTTTCATGGATTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATA
* *
23593313 CGGAGTTCATTCCCAGTCAAAGATCAGACCGGACCGAGGGCTGTGGCAGCAGGACCAGCAGCAGG
66 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGCTGTAGCAGCAGGACC-G--GCA-G
* * * *
23593378 ATCGACAGCACGTAGGGG-GGATTGGATCGATCCCCGGCTAGCGCATTCTACCTCTCTGGCCAGC
127 --C-ACA-CA-GGAGGGGAGCA--GG-TCGATCCCCGACTAGCGCATTCTACCTCTCCGGCCAGC
*
23593442 TGAGCGCCTGCATGCTCGTTTCGTGGGTTGGGTTAGGCATACAGAGTTCATTCCATGTCTAAGCC
184 TGAGCGCCTGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCC
* * * * * **
23593507 CCAACCGAATCGAGGGTTGTGGTAGCAGGATCGACAA-CGGGATTGGCAGCATGCAGAGAGGGAC
249 CCAACCGAACCGAGGGTTGTGGCAGCAGGACCGA-AAGCGGGATCGACAGCACACAGAGAGGGAC
* * * * *
23593571 CAGGCTGATCCCCGGCTTACTCATTATGCCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTTG
313 CAGGCTGATCCCCAGCTTACACATTATGCCTC-CCGACCGACTGAACGCCCGCACGCTCATTTCG
*
23593636 TAGGTTGACTTAGGCATACAGAGTTCATCCTAAGTCTAAGCATACGGAGTTCATTCCCAGACTAA
377 TAGGTTGACTTAGGCATACAGAGTTCATCCCAAGTCTAAGCATACGGAGTTCATTCCCAGACTAA
** * * * *
23593701 GATTGGACCGGATAGAGGGTTGCAACAGCAAGATCAACAGCAC-GCAGGGGGGACCGGGCCGATC
442 GATCAGACCAGACAGAGGGTTACAACAGCAAGATCAACAGCACAG-AGGGGGGACCAGGCCGATC
* * ** *
23593765 CCCAGCTTGCGCATTCTGCCACTCCG-CCTGGCTGAGCGGCCGCACGCCCGTTTCGTGGGTTGGC
506 CCCAGCTTACGCATTCTGCCACTCCGATC-GGCTGAGCACCCGCACGCCCATTTCGTGGGTT-GC
* * * *
23593829 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGG-TC
569 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCACAATCGAACCGAGGGTTCTGGCAGCGGGAT-
* **** * **
23593893 CTGTAACACACAGAGGGGGATTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTC
633 CGGTAACACACAGAGGGGGACCAAGCCGATCCCCGACTTGCGCATTATGCCTCTTCGACCAACTC
* * *
23593958 AGCGCCCGTACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCG
698 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCG
* * * * *** * * * *
23594023 GATCAG-ACCGAGGGTTGCAGCAGCAGGATCGACAGCATGTAGGGGC-GGACCGGGCTGATCCCT
763 G-GCAGCACCAAGAGTTGCAGCAGCAAGATCGACAGCACACA-GGACAGGACCAGGCCGATCCCC
* * * *
23594086 GGCTTACGCATTCTGCCTCTCTGGCT-TGCTA
826 GGCTTACACATTCTGCCTCT-TCGATCGGCTA
* * * *
23594117 AGCGCCTGCACGCTCGTTTCGTGGTTTGGCTTAGGCATACAGATTTCATTCCATGTCTAAGCATA
1 AGCGCCCGCACGCTCGTTTCATGGATTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATA
*
23594182 CGGAGTTCATTCCCAATCTAAGAT
66 CGGAGTTCATTCCCAGTCTAAGAT
23594206 TTTAAGCCAC
Statistics
Matches: 805, Mismatches: 131, Indels: 31
0.83 0.14 0.03
Matches are distributed among these distances:
855 4 0.00
856 101 0.13
857 1 0.00
859 3 0.00
860 1 0.00
862 1 0.00
863 3 0.00
864 4 0.00
865 6 0.01
866 2 0.00
867 170 0.21
868 190 0.24
869 311 0.39
870 8 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (856 bp):
AGCGCCCGCACGCTCGTTTCATGGATTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGCTGTAGCAGCAGGACCGGCAGCACA
CAGGAGGGGAGCAGGTCGATCCCCGACTAGCGCATTCTACCTCTCCGGCCAGCTGAGCGCCTGCA
TGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGAACCG
AGGGTTGTGGCAGCAGGACCGAAAGCGGGATCGACAGCACACAGAGAGGGACCAGGCTGATCCCC
AGCTTACACATTATGCCTCCCGACCGACTGAACGCCCGCACGCTCATTTCGTAGGTTGACTTAGG
CATACAGAGTTCATCCCAAGTCTAAGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACA
GAGGGTTACAACAGCAAGATCAACAGCACAGAGGGGGGACCAGGCCGATCCCCAGCTTACGCATT
CTGCCACTCCGATCGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGCTTAGGCATAGGGAGTTC
ATTCCATGTCTAAGCCACAATCGAACCGAGGGTTCTGGCAGCGGGATCGGTAACACACAGAGGGG
GACCAAGCCGATCCCCGACTTGCGCATTATGCCTCTTCGACCAACTCAGCGCCCGCACGCTCGTT
TCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGGCAGCACCAAGAGTTGC
AGCAGCAAGATCGACAGCACACAGGACAGGACCAGGCCGATCCCCGGCTTACACATTCTGCCTCT
TCGATCGGCTA
Found at i:23595404 original size:26 final size:26
Alignment explanation
Indices: 23595374--23595432 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
23595364 GTTGGTTTAG
*
23595374 GCATACGTAGTTCA-TTCCATGTCTAA
1 GCATACGAAGTTCATTTCCA-GTCTAA
23595400 GCATACGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTTCCAGTCTAA
23595426 -CAT-CGAA
1 GCATACGAA
23595433 CCAGATCGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 19 0.61
27 5 0.16
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTTCCAGTCTAA
Found at i:23595762 original size:159 final size:157
Alignment explanation
Indices: 23595527--23595900 Score: 362
Period size: 158 Copynumber: 2.4 Consensus size: 157
23595517 TGGACTGATT
* * * * *
23595527 GCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTGAGCCCCAGC
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT-AACACCAGC
** * * * *
23595592 TGGACTGAGGGTAGTGGCAGC-GAGACCGATAGCACATAGAGGGGGATCGAACCGA-TCCTCG-G
65 CAGACTGAGGGTAGTGACAGCAG-GACCGACAGCACACA-AGGGGGACCGAACC-ACT-CTCGAG
* *
23595654 CTTGCGCATTATGCCTCTCCGACTGGTTCAGC
126 CTTGCACATTATGCCTCTCCGACTGGCTCAGC
* * *
23595686 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAATATCAGA
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAACACCAG-
* * * * * * *
23595750 CCAGA-TCGAGGGTTGTGATAGCAGGATCGACAGCACGCATGGGGGACCGAGCCACTCTTGAGCT
64 CCAGACT-GAGGGTAGTGACAGCAGGACCGACAGCACACAAGGGGGACCGAACCACTCTCGAGCT
* * *
23595814 TGCACGTTCTGCCTCTCCGACTGGCTGAGC
128 TGCACATTATGCCTCTCCGACTGGCTCAGC
** * * *
23595844 ATCCGCACGCTCGTTTTGTAGGTTGGCTTAGCCATACGGAGTTCATTCCATGTCTAA
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
23595901 GCATACAGAG
Statistics
Matches: 176, Mismatches: 32, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
157 7 0.04
158 92 0.52
159 73 0.41
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (157 bp):
GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAACACCAGCC
AGACTGAGGGTAGTGACAGCAGGACCGACAGCACACAAGGGGGACCGAACCACTCTCGAGCTTGC
ACATTATGCCTCTCCGACTGGCTCAGC
Found at i:23595772 original size:502 final size:501
Alignment explanation
Indices: 23594833--23595926 Score: 1299
Period size: 502 Copynumber: 2.2 Consensus size: 501
23594823 CTCTCTGGTC
* * * * *
23594833 GGCTGAGCACACGAACGCTCGTTTCGTGTGTTGACTTAGGCATACGAAGTTCATCCCCA-GTCTA
1 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCAT-TCCATGTCTA
* * * * * * *
23594897 AGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGATAGTATGATCGGC
65 AGCATACGAAGTTCATTCCCAGTCTAACATCGAACCAGACCGAGGGTTGCGATAGTAGGACCGGC
* * * * *
23594962 AGCACGCGAGAGGAACAGGCTGATCCCCGGCTTGTGCATGCTGCCTATCCAATCGACTTAGCGCC
130 AGCACGAGAGAGGAACAGGCCGATCCCCGGCTTATGCATGCTACCTATCCAATCGACTGAGCGCC
* * **
23595027 CGCACGCCTGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
195 CGCACGCCTATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * ** *
23595092 ACCGAGGGTTGTGACAGCGAGACCGACAAGCACGTAGAGGGGGACTGGGCTGATCCTCGGCATAC
260 ACCGAGGGTAGTGACAGCGAGACCGACAAGCACATAGAGGGGGACTGAACCGATCCTCGGCATAC
* * * *
23595157 GTATTATGCCTCTTCGGCTGACTCAGCGCCCACATGCTCATTTCGTGGGTTGACTTAGGCATACA
325 GCATTATGCCTCTCCGACTGACTCAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACA
* * * *
23595222 GAGTTAATTCTCAGTCTAAGATCGGACTAGACTGAAGGTTGCGATAGCAGGTTCGACAGCACGCA
390 GAGTTAATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTGCGATAGCAGGATCGACAGCACGCA
*
23595287 -GATGGGGATCGAGCCGA-TCCTCG-GCTTGCAAATTCTGCCTCTCCGACT
455 TG--GGGGACCGAGCC-ACT-CTCGAGCTTGCAAATTCTGCCTCTCCGACT
* * *
23595335 GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGTTTAGGCATACGTAGTTCATTCCATGTCTAA
1 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
* * * *
23595400 GCATACGAAGTTCATTTCCAGTCTAACATCGAACCAGATCGAGGGTTGCG-TCAGTAGGACCTGT
66 GCATACGAAGTTCATTCCCAGTCTAACATCGAACCAGACCGAGGGTTGCGAT-AGTAGGACCGGC
* * * * * ** * **
23595464 AGCACGTAGGGGGGACCAGGCCGATCCCCGGCTTATGCATTCTACCTCTCCGGTGGACTGATTGC
130 AGCACG-AGAGAGGAACAGGCCGATCCCCGGCTTATGCATGCTACCTATCCAATCGACTGAGCGC
* * * *
23595529 CCGTACG-CTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTGAGCCCCAGCT
194 CCGCACGCCT-ATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * *
23595593 GGACTGAGGGTAGTGGCAGCGAGACCGA-TAGCACATAGAGGGGGA-TCGAACCGATCCTCGGCT
258 GGACCGAGGGTAGTGACAGCGAGACCGACAAGCACATAGAGGGGGACT-GAACCGATCCTCGGCA
* ** * *
23595656 TGCGCATTATGCCTCTCCGACTGGTTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
322 TACGCATTATGCCTCTCCGACTGACTCAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCAT
* * * * *
23595721 ACGGAGTTCATTCCCAGTCTAATATCAGACCAGA-TCGAGGGTTGTGATAGCAGGATCGACAGCA
387 ACAGAGTTAATTCCCAGTCTAAGATCAGACCAGACT-GAAGGTTGCGATAGCAGGATCGACAGCA
* **
23595785 CGCATGGGGGACCGAGCCACTCTTGAGCTTGCACGTTCTGCCTCTCCGACT
451 CGCATGGGGGACCGAGCCACTCTCGAGCTTGCAAATTCTGCCTCTCCGACT
* * * * *
23595836 GGCTGAGCATCCGCACGCTCGTTTTGTAGGTTGGCTTAGCCATACGGAGTTCATTCCATGTCTAA
1 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
* *
23595901 GCATAC-AGAGTTCACTCTCAGTCTAA
66 GCATACGA-AGTTCATTCCCAGTCTAA
23595927 GATTTTGAGC
Statistics
Matches: 499, Mismatches: 83, Indels: 21
0.83 0.14 0.03
Matches are distributed among these distances:
500 5 0.01
501 120 0.24
502 252 0.51
503 122 0.24
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (501 bp):
GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
GCATACGAAGTTCATTCCCAGTCTAACATCGAACCAGACCGAGGGTTGCGATAGTAGGACCGGCA
GCACGAGAGAGGAACAGGCCGATCCCCGGCTTATGCATGCTACCTATCCAATCGACTGAGCGCCC
GCACGCCTATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
CCGAGGGTAGTGACAGCGAGACCGACAAGCACATAGAGGGGGACTGAACCGATCCTCGGCATACG
CATTATGCCTCTCCGACTGACTCAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAG
AGTTAATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTGCGATAGCAGGATCGACAGCACGCAT
GGGGGACCGAGCCACTCTCGAGCTTGCAAATTCTGCCTCTCCGACT
Found at i:23595912 original size:26 final size:26
Alignment explanation
Indices: 23595876--23595927 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23595866 TTGGCTTAGC
* *
23595876 CATACGGAGTTCATTC-CATGTCTAAG
1 CATACAGAGTTCACTCTCA-GTCTAAG
23595902 CATACAGAGTTCACTCTCAGTCTAAG
1 CATACAGAGTTCACTCTCAGTCTAAG
23595928 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCACTCTCAGTCTAAG
Found at i:23598216 original size:159 final size:157
Alignment explanation
Indices: 23597846--23598224 Score: 395
Period size: 159 Copynumber: 2.4 Consensus size: 157
23597836 CTAAGCAAAT
* * * * * *
23597846 GGAGTCCATTCCCAGTC-AAGATAGGACCGGACTGAGGGTTACGATAGCAGGATCGACAGCACGC
1 GGAGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGC
* * * * * * * * *
23597910 AAAGGGGATTGGGCCGATCCCCAGCTTGCGCATTCTACCTCTTCGGCCTGCAGAGCGCCTGCACG
66 AAAGGGGATCGGGCCAATCCCCAGCTTGCGCACTATACCTCTCCGACCGGCACAGCGCCTGAACG
*
23597975 CCCGTTTTGTGGGTTGGCTTAGGCATA
131 CCCGTTTTGTGGGTTGACTTAGGCATA
* * ** * * * * *
23598002 GAGAGTTCATTCCTTGTCTAAG-CCCCAGTCGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCAC
1 G-GAGTTCATTCCTAGTCTAAGATCGGA-TCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCAC
* * * *
23598066 GTAAAGGGGGATCGGGCCAATCCCCAGCTTGCGCACTATGCCTCTCCGATCGGCTCAGCG-CTCG
64 GCAAA-GGGGATCGGGCCAATCCCCAGCTTGCGCACTATACCTCTCCGACCGGCACAGCGCCT-G
* * *
23598130 AACTCTCGTTTTGTGGTTTGACTTAGGCATA
127 AACGCCCGTTTTGTGGGTTGACTTAGGCATA
*
23598161 CGGAGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTGCGGTAGAAGGATCGACAGCAC
1 -GGAGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCAC
23598225 ACAGGGGGGA
Statistics
Matches: 174, Mismatches: 42, Indels: 11
0.77 0.19 0.05
Matches are distributed among these distances:
156 1 0.01
157 14 0.08
158 37 0.21
159 119 0.68
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.22
Consensus pattern (157 bp):
GGAGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGC
AAAGGGGATCGGGCCAATCCCCAGCTTGCGCACTATACCTCTCCGACCGGCACAGCGCCTGAACG
CCCGTTTTGTGGGTTGACTTAGGCATA
Found at i:23598350 original size:26 final size:26
Alignment explanation
Indices: 23598314--23598366 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23598304 GTTGGTTTAG
23598314 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
23598340 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23598366 G
1 G
23598367 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23598552 original size:26 final size:26
Alignment explanation
Indices: 23598523--23598575 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23598513 GTTGACTTAG
23598523 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
23598549 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23598575 G
1 G
23598576 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23598737 original size:26 final size:26
Alignment explanation
Indices: 23598707--23598759 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23598697 GTTGACTTAG
* *
23598707 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATACCCAATCTAA
23598733 GCATACGAAGTTCATACCCAATCTAA
1 GCATACGAAGTTCATACCCAATCTAA
23598759 G
1 G
23598760 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATACCCAATCTAA
Found at i:23598820 original size:184 final size:184
Alignment explanation
Indices: 23598510--23598905 Score: 465
Period size: 184 Copynumber: 2.2 Consensus size: 184
23598500 GCTCGTTCTG
* * * *
23598510 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATACCCAATCTAA
* * * * * * *
23598575 GATCGAATCGGGTCGAGGGTTACGGCAGCAGGATCGGCATCACGCAGGGGGGATAGGGCTGATCC
66 GATCGAACCGGCTCGAGGGTTACGGCAGCAAGATCGGCAACAAGCAGAGGGCATAGGGCTGATCC
* * * * * *
23598640 CCAGCTTACGCATTCTGCCTCTCTGACCGGCTGAGCTCCTGCATGCCCGTTTCA
131 CCAGCTTACGCATTCTACCTCTCTGACCGACTGAGCACCGGCACGCCCATTTCA
*
23598694 TGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATACCCAATCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATACCCAATCTAA
* **
23598759 GATCGGACCGGACT-GAGGGTTGTGGCAGCAAGATCGGCAACATAG-AGAGGGCACT-GGGCTGA
66 GATCGAACCGG-CTCGAGGGTTACGGCAGCAAGATCGGCAACA-AGCAGAGGGCA-TAGGGCTGA
** * * * * * *
23598821 TCTTCGGCTTGCGTATTCTACCTCTCTGGCCTACTGAGCACCGGCACGCCCATTTCG
128 TCCCCAGCTTACGCATTCTACCTCTCTGACCGACTGAGCACCGGCACGCCCATTTCA
* *
23598878 TGGGTTGGCTTAGGCATAGGGAGTTCAT
1 TGGGTTGACTTAGGCATACGGAGTTCAT
23598906 TCCATGTCTA
Statistics
Matches: 177, Mismatches: 32, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
184 174 0.98
185 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (184 bp):
TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATACCCAATCTAA
GATCGAACCGGCTCGAGGGTTACGGCAGCAAGATCGGCAACAAGCAGAGGGCATAGGGCTGATCC
CCAGCTTACGCATTCTACCTCTCTGACCGACTGAGCACCGGCACGCCCATTTCA
Found at i:23599609 original size:26 final size:26
Alignment explanation
Indices: 23599579--23599631 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23599569 GTTGACTTAG
23599579 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
23599605 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
23599631 G
1 G
23599632 AGCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23600377 original size:35 final size:35
Alignment explanation
Indices: 23600338--23600406 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
23600328 CAAGGGTTGT
23600338 GGCAGCGGGA-TCGATAGCACGCAAAGGGGGATCGA
1 GGCAGCGGGAGT-GATAGCACGCAAAGGGGGATCGA
*
23600373 GGCAGCGGGAGTGGTAGCACGCAAAGGGGGATCG
1 GGCAGCGGGAGTGATAGCACGCAAAGGGGGATCG
23600407 GGCCGATCCT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
35 31 0.97
36 1 0.03
ACGTcount: A:0.26, C:0.19, G:0.46, T:0.09
Consensus pattern (35 bp):
GGCAGCGGGAGTGATAGCACGCAAAGGGGGATCGA
Found at i:23600702 original size:26 final size:26
Alignment explanation
Indices: 23600666--23600718 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23600656 GTTGACTTAG
23600666 GCATACGAAGTTCATCCCCAGCCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
* *
23600692 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
23600718 G
1 G
23600719 GTAGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGCCTAA
Found at i:23600917 original size:549 final size:559
Alignment explanation
Indices: 23599904--23600917 Score: 1261
Period size: 560 Copynumber: 1.8 Consensus size: 559
23599894 CGAATGCTCG
* *
23599904 TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
1 TTTCATGGGTCGACTTAGGCATACGAACTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
* * * * *
23599969 ACGGTAGTAGGACAAGCAACAGGATCGGTAGCACGCTAGGAGGGATCGGGCCGATCCCCGACTTA
66 ACGGCAGTAGGACAAGCAACAGGATCGGCAGCACGCAAGGAGGGACCGAGCCGATCCCCGACTTA
* * **
23600034 CGCATTCTGCCTCTTCGATCGGCCTTTCCGGCCGACTGAGCGCCTGCACGCTTGTTTCATGGGTT
131 CGCATTCTGCCTCTTCGATCGGCCTCTCCGGCCGACTGAGCACCTGCACGCTCATTTCATGGGTT
* * *
23600099 GACTTAGGCATATGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCGAAGATCAA
196 GACTTAGGCATACGAAGTTCATCCCCAGCCTAAGCATACGAAGTTCATTCCCAGTCGAAGATCAA
* *
23600164 ACCAGACCAAAGGTTGCGGCAGTAGGATCGACAGCACGTAGGGGGGTCGGGCCGATCCCTGACTT
261 ACCAGACCAAAGGTTGCGGCAGTAGGA-CGACAGCACG-AGGGGGATCGGGCCGATCCCAGACTT
23600229 ACGCATTCTGCCTCTCCAGCCTACTGAGCGCCCGCACGCCCGTTTTATGGGTTGGCATAGGCATA
324 ACGCATTCTGCCTCTCCAGCCTACTGAGCGCCCGCACGCCCGTTTTATGGGTTGGCATAGGCATA
** * *
23600294 GGGAGTTCATTCCATGTCCAAGCCCCAGTCGAACCAAGGGTTGTGGCAGCGGGATCGATAGCACG
389 GGGAGTTCATTCCATGTCCAAGCCCCAACCGAACCAAGGGTTGTGGCAGCGGGATCGATACCACA
23600359 CAAAGGGGGATCGAGGCAGCGGGAGTGGTAGCACGCAAAGGGGGATCGGGCCGATCCTCGACTTG
454 CAAAGGGGGATCGAGGCAGCGGGAGTGGTAGCACGCAAAGGGGGATCGGGCCGATCCTCGACTTG
23600424 CGCATTATGCCTCTCCGATCGGCTCAGTGCTTGAACACTCA
519 CGCATTATGCCTCTCCGATCGGCTCAGTGCTTGAACACTCA
* * * * *
23600465 TTTCGTGGGTCGACTTGGGCATATGGACTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTT
1 TTTCATGGGTCGACTTAGGCATACGAACTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
** * * * * ** *
23600530 ACGGCAGTAGGACTGGTAGCAGGATTGGCAGCACGCAAGG-GGGACCGAGCTGATCTTCGGCTTA
66 ACGGCAGTAGGACAAGCAACAGGATCGGCAGCACGCAAGGAGGGACCGAGCCGATCCCCGACTTA
* * * * ** *
23600594 CGTATTCTGCCTTTTCGGTCGGCCTCTCTGGCCGGTTGAGCA-CTCGCACGCTCATTTTATGGGT
131 CGCATTCTGCCTCTTCGATCGGCCTCTCCGGCCGACTGAGCACCT-GCACGCTCATTTCATGGGT
* *
23600658 TGACTTAGGCATACGAAGTTCATCCCCAGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGGT-A
195 TGACTTAGGCATACGAAGTTCATCCCCAGCCTAAGCATACGAAGTTCATTCCCAGTCGAAGATCA
* * * * * **
23600722 GAATCGGATCGAGGGCTT-C-G-A-TA-G-C-AC-GCA-G-GGGGGATCGGGTTGATCCCCAG-C
260 -AACCAGACCAAAGG-TTGCGGCAGTAGGACGACAGCACGAGGGGGATCGGGCCGAT-CCCAGAC
* * * * * *
23600776 TTGCGCATTCTGCCTCTCC-GGCTGGCTGAGCGCCCGCATGCCCGTTTTGTGGGTTGGCTTAGGC
322 TTACGCATTCTGCCTCTCCAGCCT-ACTGAGCGCCCGCACGCCCGTTTTATGGGTTGGCATAGGC
* * * **
23600840 ATAGGGCA-TTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTGGCGGGATCG-TCA
386 ATAGGG-AGTTCATTCCATGTCCAAGCCCCAACCGAACCAAGGGTTGTGGCAGCGGGATCGAT-A
* *
23600903 CCACATAGAGGGGGA
449 CCACACAAAGGGGGA
23600918 CCGGGTCGAT
Statistics
Matches: 383, Mismatches: 63, Indels: 26
0.81 0.13 0.06
Matches are distributed among these distances:
548 4 0.01
549 131 0.34
550 5 0.01
551 1 0.00
552 3 0.01
553 2 0.01
554 1 0.00
556 1 0.00
557 2 0.01
558 1 0.00
559 4 0.01
560 136 0.36
561 92 0.24
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (559 bp):
TTTCATGGGTCGACTTAGGCATACGAACTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
ACGGCAGTAGGACAAGCAACAGGATCGGCAGCACGCAAGGAGGGACCGAGCCGATCCCCGACTTA
CGCATTCTGCCTCTTCGATCGGCCTCTCCGGCCGACTGAGCACCTGCACGCTCATTTCATGGGTT
GACTTAGGCATACGAAGTTCATCCCCAGCCTAAGCATACGAAGTTCATTCCCAGTCGAAGATCAA
ACCAGACCAAAGGTTGCGGCAGTAGGACGACAGCACGAGGGGGATCGGGCCGATCCCAGACTTAC
GCATTCTGCCTCTCCAGCCTACTGAGCGCCCGCACGCCCGTTTTATGGGTTGGCATAGGCATAGG
GAGTTCATTCCATGTCCAAGCCCCAACCGAACCAAGGGTTGTGGCAGCGGGATCGATACCACACA
AAGGGGGATCGAGGCAGCGGGAGTGGTAGCACGCAAAGGGGGATCGGGCCGATCCTCGACTTGCG
CATTATGCCTCTCCGATCGGCTCAGTGCTTGAACACTCA
Found at i:23601706 original size:26 final size:26
Alignment explanation
Indices: 23601676--23601729 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
23601666 TGGGTTGACT
*
23601676 TAGGCATATGGAGTTCATCCCCAATC
1 TAGGCATACGGAGTTCATCCCCAATC
* *
23601702 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAATC
23601728 TA
1 TA
23601730 AGATCAGATC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAATC
Found at i:23602065 original size:159 final size:159
Alignment explanation
Indices: 23601776--23602067 Score: 336
Period size: 159 Copynumber: 1.8 Consensus size: 159
23601766 GATAGCACGC
* * *
23601776 AGGGGGACCGAGTAGATCCCCAGATTGCGCATTCTGCCTCGTCGGTCGACTGACTGCCCGCACGC
1 AGGGGGACCGAGTAGATCCCCAGATTGCGCATTATGCCTCGTCGGTCGACTCACTGCCCGCACAC
* * ** * * * *
23601841 CCGTTTCATGGTTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGG
66 CCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATATCTAAGCACCAGACAGACCGAGG
23601906 GTTATGGCAGTGAGACTGGCAGCGCGTAG
131 GTTATGGCAGTGAGACTGGCAGCGCGTAG
* * * * * * ** * *
23601935 AGGGGGATCGGGTCGATCCCCGGCTTGTGCATTATGCCTTTTCGGTCGGCTCAGTGCCCGCACAC
1 AGGGGGACCGAGTAGATCCCCAGATTGCGCATTATGCCTCGTCGGTCGACTCACTGCCCGCACAC
* * *
23602000 TCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-ATCTAAG-ATCAGACTAGACTGA
66 CCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CCATATCTAAGCACCAGAC-AGACCGA
23602063 GGGTT
129 GGGTT
23602068 GAGGTAGCAG
Statistics
Matches: 107, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
158 4 0.04
159 100 0.93
160 3 0.03
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
AGGGGGACCGAGTAGATCCCCAGATTGCGCATTATGCCTCGTCGGTCGACTCACTGCCCGCACAC
CCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATATCTAAGCACCAGACAGACCGAGG
GTTATGGCAGTGAGACTGGCAGCGCGTAG
Found at i:23602215 original size:26 final size:26
Alignment explanation
Indices: 23602179--23602231 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23602169 GTTGGCTTAG
23602179 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
23602205 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23602231 G
1 G
23602232 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23602425 original size:26 final size:26
Alignment explanation
Indices: 23602374--23602426 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23602364 GTTGACTTAG
* *
23602374 GCATACGAAGTTCATCCCCTGTCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
*
23602400 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
23602426 G
1 G
23602427 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGCCTAA
Found at i:23602705 original size:159 final size:158
Alignment explanation
Indices: 23602435--23602731 Score: 382
Period size: 159 Copynumber: 1.9 Consensus size: 158
23602425 AGATCGAACC
* * * * * * * *
23602435 GGATCGAGGGTTGCGACAGCAGGATCGACAGCATGCAGGGGGGATCGTGCTGATCCTCGGCTTAC
1 GGATCGAGGGTTGCGACAGCAGGATCAACAGAACGCAGGGGGGACCGGGCCGATCCCCAGCTTAC
* * * *
23602500 GCATTCTGCCACTCAAGTCATCTGAGCGCCCGCGCGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
66 GCATTCTGCCACTCAAGTCAGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACG
23602565 GAGTTCATTTTATGTCTAAGCCGTAGCT
131 GAGTTCATTTTATGTCTAAGCCGTAGCT
* *
23602593 GGATCGAGGGTTGTGGCAGCAGGA-CTAACAGAACGCAGAGGGGGACCGGGCCGATCCCCAGCTT
1 GGATCGAGGGTTGCGACAGCAGGATC-AACAGAACGCAG-GGGGGACCGGGCCGATCCCCAGCTT
* * * * *
23602657 GCGCATTCTGCCTCTCCAA-TCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
64 ACGCATTCTGCCACT-CAAGTCAGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCAT
23602721 ACGGAGTTCAT
128 ACGGAGTTCAT
23602732 CCCCAGTTTA
Statistics
Matches: 117, Mismatches: 19, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
157 1 0.01
158 31 0.26
159 82 0.70
160 3 0.03
ACGTcount: A:0.18, C:0.26, G:0.33, T:0.23
Consensus pattern (158 bp):
GGATCGAGGGTTGCGACAGCAGGATCAACAGAACGCAGGGGGGACCGGGCCGATCCCCAGCTTAC
GCATTCTGCCACTCAAGTCAGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTTTATGTCTAAGCCGTAGCT
Found at i:23602791 original size:26 final size:26
Alignment explanation
Indices: 23602717--23602795 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
23602707 GTTGACTTAG
* *
23602717 GCATACGGAGTTCATCCCCAGTTTAG
1 GCATACGGAGTTCATCCCCAGTCTAA
23602743 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23602769 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23602795 G
1 G
23602796 ATCGGACCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23602929 original size:211 final size:211
Alignment explanation
Indices: 23602598--23602980 Score: 477
Period size: 211 Copynumber: 1.8 Consensus size: 211
23602588 TAGCTGGATC
* *
23602598 GAGGGTTGTGGCAGCAGGACTAACAGAACGCAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCAT
1 GAGGGTTGTGGCAGCAGGACTAACAGAACGCAGAGGGGGACCGGGCCGATCCCCAACTTGCACAT
* * * * * * *
23602663 TCTGCCTCTCCAATCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
66 TCTACCTCTCCAATCGGCTGACCACCTACACGCTCATTTCGTGGGATGACTTAGGCATACGAAGT
* *
23602728 TCATCCCCAGT-T-TAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
131 TCAT-CCCA-TATCTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
23602791 CTAAGATCGGACCAGACT
194 CTAAGATCGGACCAGACT
* * ** * *
23602809 GAGGGTTGTGGTAGCAGGA-TCAACAGCACGTTG-GGTGGGACCGGGTCGGTCCCCAACTTGCAC
1 GAGGGTTGTGGCAGCAGGACT-AACAGAACGCAGAGG-GGGACCGGGCCGATCCCCAACTTGCAC
** * * *
23602872 ATTCTACCTCTCCGGTCGGTTGACCACCTACATGCTCATTTCGTGGGATGGCTTAGGCATACGAA
64 ATTCTACCTCTCCAATCGGCTGACCACCTACACGCTCATTTCGTGGGATGACTTAGGCATACGAA
* * *
23602937 GTTTATTCCATATCTAAGCATACAGAGTTCATTCCCAGTCTAAG
129 GTTCATCCCATATCTAAGCATACAGAGTTCATCCCCAGTCTAAG
23602981 ATCAGACCGG
Statistics
Matches: 143, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
209 1 0.01
210 7 0.05
211 135 0.94
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (211 bp):
GAGGGTTGTGGCAGCAGGACTAACAGAACGCAGAGGGGGACCGGGCCGATCCCCAACTTGCACAT
TCTACCTCTCCAATCGGCTGACCACCTACACGCTCATTTCGTGGGATGACTTAGGCATACGAAGT
TCATCCCATATCTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGATCGGACCAGACT
Found at i:23603343 original size:26 final size:26
Alignment explanation
Indices: 23603307--23603359 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23603297 GTTGACTTAG
23603307 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
23603333 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
23603359 G
1 G
23603360 AGCGGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:23603711 original size:159 final size:158
Alignment explanation
Indices: 23603333--23603729 Score: 395
Period size: 159 Copynumber: 2.5 Consensus size: 158
23603323 CCTAGTCTAA
* * * * * * *
23603333 GCATACGGAGTTCATTCCCAGTCTAAGAGCGGACTAGACCGAGGGTTACGGCAGCAGGATTGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGATTGGACCGAGGGTTGCGGCAGCAGGATCGATA
* * * * *
23603398 GCACGCAGGAGGGATCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGCCGATTGAGCACC
66 GCACGCAGGAGGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAGCACC
* *
23603463 CGCACGCCCATTTCATGGGTTGGCTTAG
131 CGAACGCCCATTTCATGGGTTGACTTAG
* * * * * * **
23603491 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGAACCGAGGGTTGTGGTAGTGGGATCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGATTGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * *
23603554 CAGCACGCA-GAGGGGGTCTGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGACTGGCTCAG
64 TAGCACGCAGGA-GGGATC-GGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAG
** * * * *
23603618 TGCTCGAATGCTCATTTTATGGGTTGACTTAG
127 CACCCGAACGCCCATTTCATGGGTTGACTTAG
* ** *
23603650 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTGCAACAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGATTGGACCGAGGGTTGCGGCAGCAGGATCGATA
*
23603715 GCATGCAGGGAGGGA
66 GCACGCA-GGAGGGA
23603730 CCGAGTCGGT
Statistics
Matches: 184, Mismatches: 47, Indels: 14
0.75 0.19 0.06
Matches are distributed among these distances:
157 5 0.03
158 57 0.31
159 114 0.62
160 6 0.03
161 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGATTGGACCGAGGGTTGCGGCAGCAGGATCGATA
GCACGCAGGAGGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAGCACC
CGAACGCCCATTTCATGGGTTGACTTAG
Found at i:23603838 original size:26 final size:26
Alignment explanation
Indices: 23603809--23603861 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
23603799 GTTGGCTTAG
*
23603809 GCATACAGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
23603835 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
23603861 G
1 G
23603862 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:23604336 original size:159 final size:158
Alignment explanation
Indices: 23603969--23604524 Score: 521
Period size: 159 Copynumber: 3.4 Consensus size: 158
23603959 CTCTAGCCGA
23603969 CCTCTCCGACTGGCTGAGCACCCGCACGCTCGTTT-AGTGGGTTGGCTTAGGCATA-GGTAGTTC
1 CCTCTCCGACTGGCTGAGCACCCGCACGCTCGTTTCA-TGGGTTGGCTTAGGCATACGG-AGTTC
** * * ** * ** *
23604032 ATT-CCATGTTTAAGCCCCAG-TCGGATCGAGGGTTATGGCAGCGGGACCGGTAACACGTAG-GG
64 ATTCCCA-GTTTAAG-ATCAGATCGGACCGAGGGTTACGGCAGTAGGATCGACAACACGCAGAGG
* *
23604094 GGGATCGGGCAGATCCCCGACTTGTGCATTATG
127 GGGATCGGGC-GATCCCCGGCTTGTGCATTCTG
* * * * * * * * *
23604127 CATGTCCGACTGGCTTAGCGCCCACACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCAT
1 CCTCTCCGACTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
* * * *
23604192 TCCCAGTTTAAGATCGGACCCGACCGAGGGTTGCGGCAGTAGGATCGACAACACGCAGAGGGGGA
66 TCCCAGTTTAAGATCAGATCGGACCGAGGGTTACGGCAGTAGGATCGACAACACGCAGAGGGGGA
*
23604257 TCGGGTCGGTCCCCGGCTTGTGCATTCTG
131 TCGGG-CGATCCCCGGCTTGTGCATTCTG
* * * * *
23604286 CCTCTTCGGCTGGCTGAGCCCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCTTACGGAGTTCAT
1 CCTCTCCGACTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
* * * *
23604351 TCCCAGTCTAAGATCAGATTGGACCGAGGGTTACGACAGTAGGACTAGCAGCAGGATCGACAGCA
66 TCCCAGTTTAAGATCAGATCGGACCGAGGGTTACGGCAGTAGGA-TCG-A-CA--A-C-AC-GCA
* * *
23604416 CGCAAGAGGGGATCAGGCCGATCCCCAGCTTGCGCATTCTG
123 -G--AG-GGGGATC-GGGCGATCCCCGGCTTGTGCATTCTG
* * *
23604457 CCTCTCCG-GTCGGCTGAGCACCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCA
1 CCTCTCCGACT-GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
23604521 TTCC
65 TTCC
23604525 ATGGCTAAGC
Statistics
Matches: 320, Mismatches: 58, Indels: 27
0.79 0.14 0.07
Matches are distributed among these distances:
157 2 0.01
158 89 0.28
159 124 0.39
160 3 0.01
161 1 0.00
162 2 0.01
164 1 0.00
165 1 0.00
166 2 0.01
167 3 0.01
168 1 0.00
170 3 0.01
171 86 0.27
172 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CCTCTCCGACTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTTTAAGATCAGATCGGACCGAGGGTTACGGCAGTAGGATCGACAACACGCAGAGGGGGA
TCGGGCGATCCCCGGCTTGTGCATTCTG
Found at i:23604587 original size:171 final size:170
Alignment explanation
Indices: 23604232--23604691 Score: 469
Period size: 171 Copynumber: 2.7 Consensus size: 170
23604222 TTGCGGCAGT
* * * *
23604232 AGGATCGACAACACGCAGAGGGGGATCGGGTCGGTCCCCGGCTTGTGCATTCTGCCTCTTCGGCT
1 AGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGC-
* * *
23604297 GGCTGAGCCCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCTTACGGAGTTCATTCCCAGTCTAA
65 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGGCTAA
* ** * * * * *
23604362 GATCAGATTGGACCGAGGGTTACGACAGTAGGACTAGCAGC
130 GACCAGACCGAACCAAGGGTTACGACAGCAGGACCAGCAAC
* * *
23604403 AGGATCGACAGCACGCA-AGAGGGGATCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGT
1 AGGATCGACAGCACGCAGAG-GGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGG-
* * *
23604467 CGGCTGAGCACCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATT-CCATGGCT
64 CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GGCT
* * ** *
23604531 AAGCCCCAG-CCGAATCAAGGGTTGTGGCAGCAGGACCAGCAAC
128 AAG-ACCAGACCGAACCAAGGGTTACGACAGCAGGACCAGCAAC
* * * * * * * *
23604574 -GAGATCAACAGCACACAGAGGGGGATCGGGCTGATCTCTGGCTTGTGCATTATGCCACCCCGGC
1 AG-GATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGG-
* ** * * *
23604638 CGGCTAAGCGTCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
64 CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
23604692 ACCCCAGTCT
Statistics
Matches: 236, Mismatches: 47, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
170 6 0.03
171 224 0.95
172 6 0.03
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (170 bp):
AGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCG
GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGGCTAAG
ACCAGACCGAACCAAGGGTTACGACAGCAGGACCAGCAAC
Found at i:23604723 original size:26 final size:26
Alignment explanation
Indices: 23604678--23604730 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23604668 GTTGACTTAG
*
23604678 GCATACGGAGTTCAACCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAATCTAA
**
23604704 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCAACCCCAATCTAA
23604730 G
1 G
23604731 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCCAATCTAA
Found at i:23606130 original size:26 final size:26
Alignment explanation
Indices: 23606101--23606156 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
23606091 TGGGTTGGCT
23606101 TAAGCATACGGAGTTCATTCC-ATGTC
1 TAAGCATACGGAGTTCATTCCTA-GTC
23606127 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCTAGTC
23606153 TAAG
1 TAAG
23606157 ATCAGATCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCTAGTC
Found at i:23606515 original size:26 final size:26
Alignment explanation
Indices: 23606485--23606537 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23606475 GTTGACTTAG
23606485 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
23606511 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23606537 G
1 G
23606538 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23606866 original size:160 final size:156
Alignment explanation
Indices: 23606519--23606894 Score: 378
Period size: 160 Copynumber: 2.4 Consensus size: 156
23606509 AAGCATATGG
* * * * *
23606519 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGGTGCGACAGCAGGATCGATAGCACTGGG
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGACAGCACTGGG
* * * * * *
23606584 GGAACTGGGTCGATCCCCTACTTGCGCATTCTACCTCTTCGACCGGCTGAGCGCCCGCAGGCCCA
66 GGAACGGGGTCGATCCCCGACTTGCGCATTATACCTCTCCGACCGGCTGAGCACCCGCAAGCCCA
* ***
23606649 TTTCATGGGTTGGCTTAGGCATAGGG
131 TTTCATGGGTTGACTTAGGCATACAA
** * * *
23606675 AGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGT
1 AGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGACAGCAC-T
* * * * * * *
23606738 AGAGGGGGACGGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCGATCGGCTTAGCACCTGCAA
63 -G-GGGGAACGGGGTCGATCCCCGACTTGCGCATTATACCTCTCCGACCGGCTGAGCACCCGC-A
* * *
23606803 AGCTCGTTTCGTGGGTTGACTTAGGCATACAA
125 AGCCCATTTCATGGGTTGACTTAGGCATACAA
* * * *
23606835 AGTTCATTCCCAATCTAAGATCAGACCGGACCGAAGGTTGTGATAGCAGGATCCACAGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGACAGCA
23606895 TGTAAGAGGG
Statistics
Matches: 173, Mismatches: 39, Indels: 12
0.77 0.17 0.05
Matches are distributed among these distances:
155 3 0.02
156 44 0.25
157 3 0.02
158 1 0.01
159 51 0.29
160 68 0.39
161 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (156 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGACAGCACTGGG
GGAACGGGGTCGATCCCCGACTTGCGCATTATACCTCTCCGACCGGCTGAGCACCCGCAAGCCCA
TTTCATGGGTTGACTTAGGCATACAA
Found at i:23607012 original size:26 final size:26
Alignment explanation
Indices: 23606982--23607037 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
23606972 TGGGTTGGCT
23606982 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
23607008 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
23607034 TAAG
1 TAAG
23607038 ATTAGACCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:23607145 original size:184 final size:183
Alignment explanation
Indices: 23606835--23607380 Score: 544
Period size: 184 Copynumber: 3.0 Consensus size: 183
23606825 AGGCATACAA
* * * ** ** * *
23606835 AGTTCATTCCCAATCTAAGATCAGACCGGACCGAAGGTTGTGATAGCAGGATCCACAGCATGTAA
1 AGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACGATAGCAGGATCGGCAGCATGCAG
* * *** * * * *
23606900 GAGGGATTGTGCCGATCTTTGGCTTGCGCATTTTGCCTCTCTGGTCGACTGAGCACCCGCACGCT
66 GGGGGATCGTGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGCT-GACTGAGCGCCCGCACGCT
* *
23606965 CGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATACGG
130 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGG
* *
23607019 AGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACGATGGCAGGATCGGCAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACGATAGCAGGATCGGCAGCATGCAG
* * *
23607084 GGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACTGACTGACCGCCCGCACGCT
66 GGGGGATCGTGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG-CTGACTGAGCGCCCGCACGCT
* * * * * *
23607149 CATTTCGTCGGTTGACTTAGGCTTATGGAGTTCATCCCCA-GTCTAAGCATACGG
130 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGG
* * * * * * **
23607203 AGTTCATTCACAGTCTAAGA-TCGAATCGGACCGAGGGTTACGGTAGTAGGATCGGTAATATGCA
1 AGTTCATTCCCAGTCTAAGATTAG-ACCGGACCGAGGGTTACGATAGCAGGATCGGCAGCATGCA
* * ** * *
23607267 GGGAGGACCGTATC-ATTCCCCAGCTTGCGCATTCTGCCTCTCCGCTCTG-CTAAGCGCCCGCAC
65 GGGGGGATCGTGCCGA-TCCCCGGCTTGCGCATTCTGCCTCTCCG--CTGACTGAGCGCCCGCAC
* * * *
23607330 GCCCG-TTCTGTGGGTTGGCTTAGGCATAGGGAGTTTATTCAATGTCTAAGC
127 GCTCGTTTC-GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
23607381 CCTAGTCGGA
Statistics
Matches: 295, Mismatches: 60, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
183 8 0.03
184 280 0.95
185 7 0.02
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (183 bp):
AGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACGATAGCAGGATCGGCAGCATGCAG
GGGGGATCGTGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGCTGACTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGG
Found at i:23607310 original size:881 final size:878
Alignment explanation
Indices: 23605565--23607196 Score: 1989
Period size: 881 Copynumber: 1.9 Consensus size: 878
23605555 CTCTGGTCGG
* * *
23605565 CTGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* *
23605630 AAATGGAGTTCATTCCTAGTCTAAGATCAAATCGAACCGAGGGTTACGACAGCAGGATCGACAGC
66 AAATGGAGTTCATTCCCAGTCTAAGATCAAATCGAACCGAGGGGTACGACAGCAGGATCGACAGC
* * * * * *
23605695 ACGCAGGGGGGACCGGGTCGATCCTCGACTTGTACATTCTGCCTCTCCGGCCAGCTGAGCACCTG
131 AC-CAGGGGGAACCGGGTCGATCCCCGACTTGCACATTCTACCTCTCCGACCAGCTGAGCACCCG
* * *
23605760 CACACCCGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGAC
195 CACACCCATTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAC
* *
23605825 CTGGGGTTATGGTAGTGGGACCGACAACACGCAAAGAGGGGCCGCGCCAATCCCCGGCTTGCGCA
260 CTGGGGTTATGGCAGCGGGACCGACAACACGCAAAGAGGGGCCGCGCCAATCCCCGGCTTGCGCA
* * * * *
23605890 TTATGCCTCTCCGGTCGGCTCAACGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAG
325 TTATGCCTCTCCGATCGGCTCAACACCTGCAAGCTCATTTCATGGGTTGACTTAGGCATACAAAG
* * * * * * * * *
23605955 TTTATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGACAGCAGGATCGATAGCATGAAGGG
390 TTCATTCCCAATCTAAGATCAGACCGGACCGAAGGTTGCGACAGCAGGATCCACAGCATGAAGGA
* * *
23606020 GGTGACTGGGTCGATCCCCGAATTGCGCATTCTGCCTCTCCAGTCGGCTGACCACCCGCATGCTC
455 GGTGACTGGGCCGATCCCCGAATTGCGCATTCTGCCTCTCCAGTCGACTGACCACCCGCACGCTC
* *
23606085 GTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTA
520 GTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
* * *
23606150 GTCTAAGATCAGATCGGACTGAGGGTTGCGATAGCAGGACCAGTAGCAGGATCAACAGCATGCAA
585 GTCTAAGATCAGACCGGACCGAGGGTTACGATAGCAGGACCAG-AGCAGGA-CAACAGCATG--A
* * * * * * * **
23606215 GGGGCAATCGGATCGATCCTCGGGTTGCACAATCTGCCTCTACGGCCGACTGAGCATCCGTGCAC
646 GGGGCAATCGGACCGATCCCCGGCTTACACAATCTGCCTCTACGACCGACTGACCACCCGCACAC
* * * * *
23606280 TCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGG
711 TCATTTCGTCGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAAGCCCCAGTCGCACTGAAG
* * * * * * *
23606345 GTTGTGGCAGTAGGATCGGCAGTAAAATTAGCAGCACGCAGAGGGGGACCAGGCTGATCCCCAAC
776 ATCGTGGCAGTAGGATCGGCAGTAAAATCAGCAACACGCAGAGGAGGACCAGGATCATCCCCAAC
*
23606410 TTGTGCACTATGCCTCTCCGGTCGGCCTCTTCGATCGA
841 TTGCGCACTATGCCTCTCCGGTCGGCCTCTTCGATCGA
*
23606448 CTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* ** * * *
23606513 ATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGGTGCGACAGCAGGATCGATAGC
66 AAATGGAGTTCATTCCCAGTCTAAGATCAAATCGAACCGAGGGGTACGACAGCAGGATCGACAGC
* * * * * * *
23606578 A-CTGGGGGAACTGGGTCGATCCCCTACTTGCGCATTCTACCTCTTCGACCGGCTGAGCGCCCGC
131 ACCAGGGGGAACCGGGTCGATCCCCGACTTGCACATTCTACCTCTCCGACCAGCTGAGCACCCGC
** * *
23606642 AGGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
196 ACACCCATTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACC
* * * * * * * * * * *
23606707 -GAGGGTTGTGGCAGCGGGATCGGCAGCACGTAGAG-GGGGACGGGGTCGATCCCCGGCTTGTGC
261 TG-GGGTTATGGCAGCGGGACCGACAACACGCAAAGAGGGG-CCGCGCCAATCCCCGGCTTGCGC
* * * *
23606770 ATTATGCCTCTCCGATCGGCTTAGCACCTGCAAAGCTCGTTTCGTGGGTTGACTTAGGCATACAA
324 ATTATGCCTCTCCGATCGGCTCAACACCTGC-AAGCTCATTTCATGGGTTGACTTAGGCATACAA
* *
23606835 AGTTCATTCCCAATCTAAGATCAGACCGGACCGAAGGTTGTGATAGCAGGATCCACAGCATGTAA
388 AGTTCATTCCCAATCTAAGATCAGACCGGACCGAAGGTTGCGACAGCAGGATCCACAGCATG-AA
* * *** ** * ** *
23606900 -GAGG-GATTGTGCCGATCTTTGGCTTGCGCATTTTGCCTCTCTGGTCGACTGAGCACCCGCACG
452 GGAGGTGACTGGGCCGATCCCCGAATTGCGCATTCTGCCTCTCCAGTCGACTGACCACCCGCACG
23606963 CTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
517 CTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
* * *
23607028 CCAGTCTAAGATTAGACCGGACCGAGGGTTACGATGGCAGGATC-G-GCA-G-C-AC-GCA-G-G
582 CCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCAGGACCAGAGCAGGACAACAGCATGAG
* * * * * * * *
23607085 GGG-GATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACTGACTGACCGCCCGCACGCT
647 GGGCAATCGGACCGATCCCCGGCTTACACAATCTGCCTCTACGACCGACTGACCACCCGCACACT
* * *
23607149 CATTTCGTCGGTTGACTTAGGCTTATGGAGTTCATCCCCA-GTCTAAGC
712 CATTTCGTCGGTTGACTTAGGCATACGAAGTTCAT-CCCATGTCTAAGC
23607197 ATACGGAGTT
Statistics
Matches: 634, Mismatches: 110, Indels: 25
0.82 0.14 0.03
Matches are distributed among these distances:
868 82 0.13
869 7 0.01
872 1 0.00
873 3 0.00
874 2 0.00
875 1 0.00
877 1 0.00
878 3 0.00
880 6 0.01
881 324 0.51
882 83 0.13
883 121 0.19
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (878 bp):
CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
AAATGGAGTTCATTCCCAGTCTAAGATCAAATCGAACCGAGGGGTACGACAGCAGGATCGACAGC
ACCAGGGGGAACCGGGTCGATCCCCGACTTGCACATTCTACCTCTCCGACCAGCTGAGCACCCGC
ACACCCATTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACC
TGGGGTTATGGCAGCGGGACCGACAACACGCAAAGAGGGGCCGCGCCAATCCCCGGCTTGCGCAT
TATGCCTCTCCGATCGGCTCAACACCTGCAAGCTCATTTCATGGGTTGACTTAGGCATACAAAGT
TCATTCCCAATCTAAGATCAGACCGGACCGAAGGTTGCGACAGCAGGATCCACAGCATGAAGGAG
GTGACTGGGCCGATCCCCGAATTGCGCATTCTGCCTCTCCAGTCGACTGACCACCCGCACGCTCG
TTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCGGACCGAGGGTTACGATAGCAGGACCAGAGCAGGACAACAGCATGAGGGGC
AATCGGACCGATCCCCGGCTTACACAATCTGCCTCTACGACCGACTGACCACCCGCACACTCATT
TCGTCGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAAGCCCCAGTCGCACTGAAGATCGT
GGCAGTAGGATCGGCAGTAAAATCAGCAACACGCAGAGGAGGACCAGGATCATCCCCAACTTGCG
CACTATGCCTCTCCGGTCGGCCTCTTCGATCGA
Found at i:23607504 original size:159 final size:157
Alignment explanation
Indices: 23607285--23607697 Score: 399
Period size: 159 Copynumber: 2.6 Consensus size: 157
23607275 CGTATCATTC
* * * *
23607285 CCCAGCTTGCGCATTCTGCCTCTCCG-CTCTGCTAAGCGCCCGCACGCCCG-TTCTGTGGGTTGG
1 CCCAGCTTACGCATTCTGCCTCTCCGACT-GGCTAAGCGCCCGAACGCTCGTTTC-GTGGGTTGG
* * * * * ** ** *
23607348 CTTAGGCATAGGGAGTTTATTCAATGTCTAAGCCCTAG-TCGGATCGAGGGTTGTGGCAACGGGA
64 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC-AGACCAGACCGAGCATTGCAGCAACAGGA
*
23607412 CCGACAATACGCAGAGTGGGA-CTGGGTC-GAT
128 CCGACAATACGCA-AGGGGGATC-GGGTCAG-T
* * * *
23607443 CCCTAGCTTACGCATTATGCCTCTCCGACTGGCTCAGCGCCCGAATGCTCGTTTCGTGGGTTGAC
1 CCC-AGCTTACGCATTCTGCCTCTCCGACTGGCTAAGCGCCCGAACGCTCGTTTCGTGGGTTGGC
** * *
23607508 TTAGGCAT-GAGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGCATTGCAGTAGCAGGA
65 TTAGGCATAG-GGAGTTCATT-CCATGTCTAAGCCCAGACCAGACCGAGCATTGCAGCAACAGGA
* *
23607571 TCGACAGTACGCAAGGGGGATCGGGTCAGT
128 CCGACAATACGCAAGGGGGATCGGGTCAGT
* * * * *
23607601 CCCAGGCTTACGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGTACGCTCATTTCGTGGGTTGGC
1 CCCA-GCTTACGCATTCTGCCTCTCCGACTGGCTAAGCGCCCGAACGCTCGTTTCGTGGGTTGGC
* *
23607666 TTCGGCATACGGAGTTCATTCCATGTCTAAGC
65 TTAGGCATAGGGAGTTCATTCCATGTCTAAGC
23607698 ATATGAAGTT
Statistics
Matches: 208, Mismatches: 36, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
157 4 0.02
158 97 0.47
159 100 0.48
160 7 0.03
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (157 bp):
CCCAGCTTACGCATTCTGCCTCTCCGACTGGCTAAGCGCCCGAACGCTCGTTTCGTGGGTTGGCT
TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGACCAGACCGAGCATTGCAGCAACAGGACCG
ACAATACGCAAGGGGGATCGGGTCAGT
Found at i:23607689 original size:685 final size:687
Alignment explanation
Indices: 23606446--23607893 Score: 1672
Period size: 685 Copynumber: 2.1 Consensus size: 687
23606436 CTCTTCGATC
* * * *
23606446 GACTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
1 GACTGACCGCCCGCACGCTCATTTCATCGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * *
23606511 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGGTGCGACAGCAGGATCGATA
66 GCATACGGAGTTCATTCACAGTCTAAGATCGAATCGGACCGAGGGGTACGACAGCAGGATCGATA
* * * *
23606576 GCACTGGGGGAACTGGGTCGATCCCCTACTTGCGCATTCTACCTCTTCGACCGGCTGAGCGCCCG
131 GCAC-GGGGGAACCGGATCGATCCCCTACTTGCGCATTCTACCTCTCCGACCGGCTAAGCGCCCG
* *
23606641 CAGGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
195 CACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCAGCCGGAC
* * * * * * **
23606706 CGAGGGTTGTGGCAGCGGGATCGGCAGCACGTAGAGGGGGACGGGGTCGATCCCCGGCTTGTGCA
260 CGAGGGTTGTGGCAACGGGACCGACAACACGCAGAGGGGGACGGGGTCGATCCCCAGCTTACGCA
* *
23606771 TTATGCCTCTCCGATCGGCTTAGCACCTGCAAAGCTCGTTTCGTGGGTTGACTTAGGCATACAAA
325 TTATGCCTCTCCGATCGGCTCAGCACCCGCAAAGCTCGTTTCGTGGGTTGACTTAGGCATACAAA
* * * * *
23606836 GTTCATTCCCAATCTAAGATCAGACCGGACCGAAGGTTGTGATAGCAGGATCCACAGCATGTAAG
390 GTTCATTCCCAATCTAAGATCAGACCAGACCGAAGATTGAGATAGCAGGATCCACAGCACGCAAG
* * * *** * * * **
23606901 AGGGATTGTGCCGATCTTTGGCTTGCGCATTTTGCCTCTCTGGTCGACTGAGCACCCGCACGCTC
455 AGGGATCGGGCAGATCCCAGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTC
* *
23606966 GTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
520 ATTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCA
* * * * * *
23607031 GTCTAAGATTAGACCGGACCGAGGGTT-ACGA-TGG-CAG-GATCGGCAGCACGCAGGGGGGATC
585 GTCTAAGATTAGACCAGACCGAAGGTTAACAACAGGACAGAGATCGACAGCACGCAGGGGGGACC
* *
23607092 GGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACT
650 GAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACT
* * *
23607130 GACTGACCGCCCGCACGCTCATTTCGTCGGTTGACTTAGGCTTATGGAGTTCATCCCCAGTCTAA
1 GACTGACCGCCCGCACGCTCATTTCATCGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* ** *
23607195 GCATACGGAGTTCATTCACAGTCTAAGATCGAATCGGACCGAGGGTTACGGTAGTAGGATCGGTA
66 GCATACGGAGTTCATTCACAGTCTAAGATCGAATCGGACCGAGGGGTACGACAGCAGGATC-G--
* * *
23607260 ATATGCA-GGGAGG-ACCGTATC-ATTCCCC-AGCTTGCGCATTCTGCCTCTCCG-CTCTGCTAA
128 ATA-GCACGGG-GGAACCGGATCGA-TCCCCTA-CTTGCGCATTCTACCTCTCCGAC-CGGCTAA
* * * *
23607320 GCGCCCGCACGCCC-GTTCTGTGGGTTGGCTTAGGCATAGGGAGTTTATTCAATGTCTAAGCCCT
188 GCGCCCGCACGCCCATTTC-ATGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCC
* * * * * *
23607384 AGTCGGATCGAGGGTTGTGGCAACGGGACCGACAATACGCAGAGTGGGACTGGGTCGATCCCTAG
252 AGCCGGACCGAGGGTTGTGGCAACGGGACCGACAACACGCAGAGGGGGACGGGGTCGATCCCCAG
* *
23607449 CTTACGCATTATGCCTCTCCGA-CTGGCTCAGCGCCCG-AATGCTCGTTTCGTGGGTTGACTTAG
317 CTTACGCATTATGCCTCTCCGATC-GGCTCAGCACCCGCAAAGCTCGTTTCGTGGGTTGACTTAG
** * *
23607512 GCATGA-GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG-AGCATTGCAG-TAGCAGGATCG
381 GCAT-ACAAAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAG-ATTG-AGATAGCAGGATCC
* * **
23607574 ACAGTACGCAAGGGGGATCGGGTCAG-TCCCAGGCTTACGCATTCTGCCTCTCCGACCGGTTGAG
443 ACAGCACGCAAGAGGGATCGGG-CAGATCCCAGGCTTACGCATTCTGCCTCTCCGACCGACTGAG
* * * ** *
23607638 CGCCCGTACGCTCATTTCGTGGGTTGGCTTCGGCATACGGAGTTCATTCCATGTCTAAGCATATG
507 CACCCGCACGCTCATTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATACG
*
23607703 AAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAAGGTTGCAACAACAGGACCAGCAACAAGAT
572 AAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAAGGTT--AACAACAGGA-CAG-----AGAT
23607768 CGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGA-T
629 CGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACT
** * * * * * * * *
23607826 CGGTTGAGCGCTCGTACGCTCGTTTCATGGGTTCACTTAGGCATACAGAGTTCAT-TCCATGTCT
1 -GACTGACCGCCCGCACGCTCATTTCATCGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCT
23607890 AAGC
64 AAGC
23607894 CCCAATCAGA
Statistics
Matches: 636, Mismatches: 100, Indels: 43
0.82 0.13 0.06
Matches are distributed among these distances:
684 113 0.18
685 219 0.34
686 178 0.28
687 5 0.01
688 6 0.01
689 2 0.00
691 3 0.00
696 4 0.01
697 106 0.17
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (687 bp):
GACTGACCGCCCGCACGCTCATTTCATCGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
GCATACGGAGTTCATTCACAGTCTAAGATCGAATCGGACCGAGGGGTACGACAGCAGGATCGATA
GCACGGGGGAACCGGATCGATCCCCTACTTGCGCATTCTACCTCTCCGACCGGCTAAGCGCCCGC
ACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCAGCCGGACC
GAGGGTTGTGGCAACGGGACCGACAACACGCAGAGGGGGACGGGGTCGATCCCCAGCTTACGCAT
TATGCCTCTCCGATCGGCTCAGCACCCGCAAAGCTCGTTTCGTGGGTTGACTTAGGCATACAAAG
TTCATTCCCAATCTAAGATCAGACCAGACCGAAGATTGAGATAGCAGGATCCACAGCACGCAAGA
GGGATCGGGCAGATCCCAGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCA
TTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAG
TCTAAGATTAGACCAGACCGAAGGTTAACAACAGGACAGAGATCGACAGCACGCAGGGGGGACCG
AGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACT
Found at i:23607699 original size:26 final size:26
Alignment explanation
Indices: 23607670--23607722 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23607660 GTTGGCTTCG
*
23607670 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
23607696 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
23607722 G
1 G
23607723 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:23608047 original size:513 final size:505
Alignment explanation
Indices: 23607011--23608266 Score: 1317
Period size: 513 Copynumber: 2.5 Consensus size: 505
23607001 CCATGTCTAA
* * * * *
23607011 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACGATGGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTGCG-TAGCAGGATCGACA
* * * *
23607076 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACTGACTGACCGCC
65 GCACGCAAGGGGGATCGGGCAG-T-CCCGGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCGCC
* * * *
23607141 CGCACGCTCATTTCGTCGGTTGACTTAGGCTTATGGAGTTCATCCCCAGTCTAAGCATACGGAGT
128 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
* * * * * * ** * *
23607206 TCATTCACAGTCTAAGATCGAATCGGACCGAGGGTT-----AC-GG-TAGTAGGATCGGTAATAT
193 TCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGAACAACAGGACAGCAAGATCGACAACAC
* * * *
23607264 GCAGGGAGGACCGTATCATTCCCCAGCTTGCGCATTCTGCCTCTCCGCTCTGCTAAGCGCCCGCA
258 GCAGGGAGGACCGTACCATTCCCCAGCTTACGCATTCTGCCTCTCCGATCGGCTAAGCGCCCGCA
* ** ** * * * *
23607329 CGCCCGTTCTGTGGGTTGGCTTAGGCATAGGGAGTTTATTCAATGTCTAAGCCCTAGTCGGATCG
323 CGCCCGTTCTATGGGTTCACTTAGGCATACAGAGTTCATTCAATGTCTAAGCCCCAATCAGATCG
** * * * * * *
23607394 AGGGTTGTGGCAACGGGACCGACAATACGCAGAGTGGGACTGGGTCGATCCCTAGCTTACGCATT
388 AAAGTTGTGGCAACAGGACCGACAACACACAGAGAGGGACCGGGTCGATCCCGAGCTTACGCATT
* * * * *
23607459 ATGCCTCTCCGACTGGCTCAGCGCCCGAATGCTCGTTTCGTGGGTTGACTTAG
453 ATGCCGCTACGACTGGCTCAGCGCCCGAATGCTCGTTTCATGGGTTAACATAG
* *
23607512 GCATGA-GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGCATTGCAGTAGCAGGATCGAC
1 GCAT-ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTGC-GTAGCAGGATCGAC
* * *
23607576 AGTACGCAAGGGGGATCGGGTCAGTCCCAGGCTTACGCATTCTGCCTCTCCGACCGGTTGAGCGC
64 AGCACGCAAGGGGGATCGGG-CAGTCCC-GGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCGC
* * * * *
23607641 CCGTACGCTCATTTCGTGGGTTGGCTTCGGCATACGGAGTTCAT-TCCATGTCTAAGCATATGAA
127 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGA
* * *
23607705 GTTCATTCCCAGTCTAAGATTGGACCAGACCGAAGGTTGCAACAACAGGACCAGCAACAAGATCG
191 GTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTG-AACAACAGGA-CAG---CAAGATCG
* * * *
23607770 ACAGCACGCAGGGGGGACCG-AGCCGA-TCCCC-GACTTACGCATTCTGCCTCTCCGATCGGTTG
251 ACAACACGCAGGGAGGACCGTA-CC-ATTCCCCAG-CTTACGCATTCTGCCTCTCCGATCGGCTA
* * * *
23607832 AGCGCTCGTACGCTCGTT-TCATGGGTTCACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCC
313 AGCGCCCGCACGCCCGTTCT-ATGGGTTCACTTAGGCATACAGAGTTCATTCAATGTCTAAGCCC
* * * * *
23607896 CAATCAGA-CTGAAAGTTGTGGCAGCAGGACTGGCAACACACAGAGAGGGGCCGGGTTGATCCCC
377 CAATCAGATC-GAAAGTTGTGGCAACAGGACCGACAACACACAGAGAGGGACCGGGTCGAT-CCC
** *
23607960 GA-CTTGTGCATTATGCCGCTACGATTGGCTCAGC-CCTCGAATGCTCGTTTCATGGGTTAACAT
440 GAGCTTACGCATTATGCCGCTACGACTGGCTCAGCGCC-CGAATGCTCGTTTCATGGGTTAACAT
23608023 AG
504 AG
* * *
23608025 GCATACGGAGTTCATTCCCAGTCTATGATCAGACTGGACCGAGGATTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTGC-GTAGCAGGATCGACA
* * * *
23608090 GCACGC-AGGGGGATCGGGCCGGTCCTCGACTTATGCATTC-GACCTCTCC-AGTTGGCTGAGCG
65 GCACGCAAGGGGGATCGGG-CAGTCC-CGGCTTACGCATTCTG-CCTCTCCGA-CTGGCTGAGCG
* ** **
23608152 CCTGCACGCTTGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
126 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
* *
23608217 GTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGTAACAGCAGGA
191 GTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTG-AACAACAGGA
23608267 TTGGCAGCAC
Statistics
Matches: 618, Mismatches: 108, Indels: 47
0.80 0.14 0.06
Matches are distributed among these distances:
500 6 0.01
501 187 0.30
502 4 0.01
507 2 0.00
508 2 0.00
510 2 0.00
511 2 0.00
512 145 0.23
513 263 0.43
514 5 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (505 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTGCGTAGCAGGATCGACAG
CACGCAAGGGGGATCGGGCAGTCCCGGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGC
ACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGAACAACAGGACAGCAAGATCGACAACACGCA
GGGAGGACCGTACCATTCCCCAGCTTACGCATTCTGCCTCTCCGATCGGCTAAGCGCCCGCACGC
CCGTTCTATGGGTTCACTTAGGCATACAGAGTTCATTCAATGTCTAAGCCCCAATCAGATCGAAA
GTTGTGGCAACAGGACCGACAACACACAGAGAGGGACCGGGTCGATCCCGAGCTTACGCATTATG
CCGCTACGACTGGCTCAGCGCCCGAATGCTCGTTTCATGGGTTAACATAG
Found at i:23608218 original size:26 final size:26
Alignment explanation
Indices: 23608182--23608234 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23608172 GTTGGCTTAG
23608182 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23608208 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23608234 G
1 G
23608235 ATCGGATCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23608407 original size:25 final size:26
Alignment explanation
Indices: 23608379--23608430 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23608369 GTTGACTTAT
23608379 GCATACGG-GTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
23608404 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23608430 G
1 G
23608431 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 7 0.29
26 13 0.54
27 4 0.17
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23608492 original size:196 final size:197
Alignment explanation
Indices: 23608132--23608492 Score: 510
Period size: 196 Copynumber: 1.8 Consensus size: 197
23608122 ATGCATTCGA
* * ** *
23608132 CCTCTCCAGTTGGCTGAGCGCCTGCACGCTTGTTTTATGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCCAGTCGGCTGAGCGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCAT
* *
23608197 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGTAACAG
66 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGCAACAG
* * *
23608262 CAGGATTGGCAGCACGCAGGGGGGACTGGGTCGATTCCCAGCTTGTGCATTCTACCTCCTCAACC
131 CAGGATCGACAGCACGCAGGGGGGACTAGGTCGATTCCCAGCTTGTGCATTCTACCTCCTCAACC
23608327 GG
196 GG
* * * *
23608329 CCTCTCCAGTCGGTTGAGTGCCCGCATGCTCATTTTATGGGTTGACTTATGCATACGG-GTTCAT
1 CCTCTCCAGTCGGCTGAGCGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCAT
* * * ***
23608393 CCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAG
66 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGCAACAG
*
23608458 CAGGATCGATAGCACGCAGGGGGGA-TCAGGTCGAT
131 CAGGATCGACAGCACGCAGGGGGGACT-AGGTCGAT
23608493 CCGTAGCTTA
Statistics
Matches: 142, Mismatches: 21, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
195 1 0.01
196 92 0.65
197 49 0.35
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (197 bp):
CCTCTCCAGTCGGCTGAGCGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCAT
CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGCAACAG
CAGGATCGACAGCACGCAGGGGGGACTAGGTCGATTCCCAGCTTGTGCATTCTACCTCCTCAACC
GG
Done.