Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 235 of 402
Found at i:23609408 original size:26 final size:26
Alignment explanation
Indices: 23609372--23609424 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23609362 GTTGACTTAG
23609372 GCATACGGAGTTAATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
* * *
23609398 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
23609424 G
1 G
23609425 ATCGGACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:23609757 original size:159 final size:155
Alignment explanation
Indices: 23609398--23609794 Score: 359
Period size: 159 Copynumber: 2.5 Consensus size: 155
23609388 CCCAGTCTAA
* * * * * * *
23609398 GCATATGGAGTTCATTCCCAGTCTAAGATCGGAC-AGGATTGAGGGTTGCGATAGTAGGATCGAT
1 GCATACGGAGTTCATT-CCAGTCTAAGATTGGACTA-GATTGAGGGTTGTGACAGCAGGACCGAC
* * *
23609462 AGCACGCAGGGGGACCGAGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCATCGACTGAGTGCCC
64 AGCACGCAGGGGGACCGAGCCGATCCTCAGCTTGCGCATTATGCCTCTCCACCGACTCAGTGCCC
** * * *
23609527 TCACGCCCGTTTCATGGGTTGGCTTAG
129 GAACGCCCATTCCATGGGTTGACTTAG
* ** ** * ** * *
23609554 GCATAGGGAGTTCATTCCATGTCTAAGCCTCAACTGGACCGAGGGTTGTGGCAGCAGGACCGGCA
1 GCATACGGAGTTCATTCCA-GTCTAAGATTGGACTAGATTGAGGGTTGTGACAGCAGGACCGACA
* * ** *
23609619 GCATGTAGAGGGGGACCGAGTTGATCC-CTGGCTTGCGCATTATGCCTCTCCGACC-AGCTCAGT
65 GCACG--CAGGGGGACCGAGCCGATCCTC-AGCTTGCGCATTATGCCTCTCC-ACCGA-CTCAGT
* *
23609682 GCCCGAACGCTCATTCCGTGGGTTGACTTAG
125 GCCCGAACGCCCATTCCATGGGTTGACTTAG
* * * *
23609713 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACTAGATTGAGGGTTGTGATAGTAGGATCGATA
1 GCATACGGAGTTCATTCC-AGTCTAAGATTGGACTAGATTGAGGGTTGTGACAGCAGGACCGACA
23609778 GCACGCAGGGGGGACCG
65 GCACGCA-GGGGGACCG
23609795 GGTCGGTCTC
Statistics
Matches: 185, Mismatches: 47, Indels: 16
0.75 0.19 0.06
Matches are distributed among these distances:
155 3 0.02
156 48 0.26
157 2 0.01
158 47 0.25
159 84 0.45
160 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCAGTCTAAGATTGGACTAGATTGAGGGTTGTGACAGCAGGACCGACAG
CACGCAGGGGGACCGAGCCGATCCTCAGCTTGCGCATTATGCCTCTCCACCGACTCAGTGCCCGA
ACGCCCATTCCATGGGTTGACTTAG
Found at i:23609876 original size:158 final size:156
Alignment explanation
Indices: 23609398--23609897 Score: 474
Period size: 158 Copynumber: 3.2 Consensus size: 156
23609388 CCCAGTCTAA
* * *
23609398 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGAC-AGGATTGAGGGTTGCGATAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATTGGACTA-GATTGAGGGTTGTGATAGTAGGATCGA
* * * * *
23609461 TAGCACGCA-GGGGGACCGAGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCATCGACTGAGTGC
64 TAGCACGCAGGGGGGACCGAGTCGAT-CTCCGCTTGCGCATTCTGCCTCCCCATAGGCTGAGTGC
* *
23609525 CCTCACGCCCGTTTCATGGGTTGGCTTAG
128 CCACACGCTCGTTTCATGGGTTGGCTTAG
* ** ** * ** ** * * **
23609554 GCATAGGGAGTTCATTCCATGTCTAAGCCTCAACTGGACCGAGGGTTGTGGCAGCAGGACCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGATTGGACTAGATTGAGGGTTGTGATAGTAGGATCGATA
* * * * * * *
23609619 GCATGTAGAGGGGGACCGAGTTGATC-CCTGGCTTGCGCATTATGCCTCTCCGACCA-GCTCAGT
66 GCACGCAG-GGGGGACCGAGTCGATCTCC--GCTTGCGCATTCTGCCTC-CCCA-TAGGCTGAGT
* * * *
23609682 GCCCGA-ACGCTCATTCCGTGGGTTGACTTAG
126 GCCC-ACACGCTCGTTTCATGGGTTGGCTTAG
23609713 GCATACGGAGTTCATTCC-TAGTCTAAGATTGGACTAGATTGAGGGTTGTGATAGTAGGATCGAT
1 GCATACGGAGTTCATTCCAT-GTCTAAGATTGGACTAGATTGAGGGTTGTGATAGTAGGATCGAT
* * * **
23609777 AGCACGCAGGGGGGACCGGGTCGGTCTCCGACTTACGCATTCTGCCTCCCCAGTAGGCTGAACGC
65 AGCACGCAGGGGGGACCGAGTCGATCTCCG-CTTGCGCATTCTGCCTCCCCA-TAGGCTGAGTGC
*
23609842 CCACATGCTCGTTTCATGGGTTGGCTTAG
128 CCACACGCTCGTTTCATGGGTTGGCTTAG
23609871 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
23609898 CATATGGAGT
Statistics
Matches: 263, Mismatches: 66, Indels: 28
0.74 0.18 0.08
Matches are distributed among these distances:
155 3 0.01
156 50 0.19
157 7 0.03
158 114 0.43
159 89 0.34
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATTGGACTAGATTGAGGGTTGTGATAGTAGGATCGATA
GCACGCAGGGGGGACCGAGTCGATCTCCGCTTGCGCATTCTGCCTCCCCATAGGCTGAGTGCCCA
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:23609901 original size:26 final size:26
Alignment explanation
Indices: 23609871--23609923 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23609861 GTTGGCTTAG
23609871 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
23609897 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23609923 G
1 G
23609924 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23610117 original size:26 final size:26
Alignment explanation
Indices: 23610080--23610129 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
23610070 TTTGACTTAG
23610080 GCATACAAAGTTCATCCCCAGTCTGA
1 GCATACAAAGTTCATCCCCAGTCTGA
* *
23610106 GCATACAGAGTTCATTCCCAGTCT
1 GCATACAAAGTTCATCCCCAGTCT
23610130 AAGATCAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTGA
Found at i:23611987 original size:159 final size:158
Alignment explanation
Indices: 23611684--23612056 Score: 435
Period size: 159 Copynumber: 2.4 Consensus size: 158
23611674 GTCTAAGCAA
* ** ** ** * *
23611684 ACGGAGTTCATCCCA-GTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCAACAGCAC
1 ACGGAGTTCAACCCATGTCTAAGCCCCAACCAGACCAAGGGTTGTGGTAGCAGGACCAACAGCAC
* * *
23611748 ACAGGGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTACCTCTCCGGTCGACTGAGCGCCCACA
66 ACAAGGGGGACCAGGTCGATCCTCGGCTTACGCATTCTACCTCTCCGGTCGACTGAGCACCCACA
*
23611813 TGCCTGTTTCATGGGTTGGCTTAGGCAT
131 CGCCTGTTTCATGGGTTGGCTTAGGCAT
* ** **** * *
23611841 AGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCAAGGGTTGTGGTAGCGGGACCGACAGCAC
1 ACGGAGTTCAACCCATGTCTAAGCCCCAACCAGACCAAGGGTTGTGGTAGCAGGACCAACAGCAC
* * * ** *
23611906 GCAAAGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGGTCGGTTGAGCACCCGC
66 AC-AAGGGGGACCAGGTCGATCCTCGGCTTACGCATTCTACCTCTCCGGTCGACTGAGCACCCAC
*
23611971 ACG-CTCGTTTCGTGGGTTGGCTTAGGCAT
130 ACGCCT-GTTTCATGGGTTGGCTTAGGCAT
* *
23612000 ACGGAGTTCAACCCATGTCTAAGCCCCAACCAGACCAATGGTTGTGGTAGCAAGACC
1 ACGGAGTTCAACCCATGTCTAAGCCCCAACCAGACCAAGGGTTGTGGTAGCAGGACC
23612057 GGTAATAGGA
Statistics
Matches: 176, Mismatches: 37, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
157 13 0.07
158 38 0.22
159 125 0.71
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.21
Consensus pattern (158 bp):
ACGGAGTTCAACCCATGTCTAAGCCCCAACCAGACCAAGGGTTGTGGTAGCAGGACCAACAGCAC
ACAAGGGGGACCAGGTCGATCCTCGGCTTACGCATTCTACCTCTCCGGTCGACTGAGCACCCACA
CGCCTGTTTCATGGGTTGGCTTAGGCAT
Found at i:23612373 original size:26 final size:26
Alignment explanation
Indices: 23612337--23612389 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23612327 GTTGGCTTAG
23612337 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23612363 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23612389 G
1 G
23612390 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23612768 original size:26 final size:26
Alignment explanation
Indices: 23612716--23612768 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23612706 GTTGACTTAG
* *
23612716 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATACCCAATCTAA
*
23612742 GCATACAGAGTTCATACCCAATTTAA
1 GCATACAGAGTTCATACCCAATCTAA
23612768 G
1 G
23612769 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAATCTAA
Found at i:23613257 original size:26 final size:26
Alignment explanation
Indices: 23613205--23613257 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23613195 GTTGGCTTAG
*
23613205 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGGAGTTCATTCCATGTCTAA
23613231 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
23613257 G
1 G
23613258 ATAGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:23614518 original size:26 final size:26
Alignment explanation
Indices: 23614482--23614534 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23614472 GTTGACTTAG
*
23614482 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
**
23614508 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
23614534 G
1 G
23614535 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23614814 original size:159 final size:158
Alignment explanation
Indices: 23614545--23614852 Score: 409
Period size: 159 Copynumber: 1.9 Consensus size: 158
23614535 ATCGGACCGG
**
23614545 ACCGAAGGTTGCGGCAGCAGGATCGGCAACACGTAGGGGGGACTGGGCCGATCCCCGGCTTACGC
1 ACCGAAGGTTGCGGCAGCAGGATCGGCAACACGTAGGGGGGACCAGGCCGATCCCCGGCTTACGC
* * *
23614610 ATTCTGCCTCCCCGGCAGGCTGAGTGCCCGCACGCCCATTCCGTGGGTTGGCTTAGGCACAGGGA
66 ATTCTGCCTCCCCGACAGGCTGAGCGCCCGCACGCCCATTCCGTGGGTTGGCTTAGGCACACGGA
23614675 GTTCATTCCATGTCTAAGCCCTAGCCGA
131 GTTCATTCCATGTCTAAGCCCTAGCCGA
* * * * * * *
23614703 ACCGAGGGTTGTGGTAGCAGGATCGGCATCATGTAGAGGGGGACCAGGCCGATCCTCGGCTTGCG
1 ACCGAAGGTTGCGGCAGCAGGATCGGCAACACGTAG-GGGGGACCAGGCCGATCCCCGGCTTACG
* * * ** * * * *
23614768 CATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACGGTCGTTTCGTGGGTTGTCTTAGGCATACGG
65 CATTCTGCCTCCCCGACAGGCTGAGCGCCCGCACGCCCATTCCGTGGGTTGGCTTAGGCACACGG
*
23614833 AGTTCGTTCCATGTCTAAGC
130 AGTTCATTCCATGTCTAAGC
23614853 ATACAGAGTT
Statistics
Matches: 127, Mismatches: 22, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
158 31 0.24
159 96 0.76
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.21
Consensus pattern (158 bp):
ACCGAAGGTTGCGGCAGCAGGATCGGCAACACGTAGGGGGGACCAGGCCGATCCCCGGCTTACGC
ATTCTGCCTCCCCGACAGGCTGAGCGCCCGCACGCCCATTCCGTGGGTTGGCTTAGGCACACGGA
GTTCATTCCATGTCTAAGCCCTAGCCGA
Found at i:23614861 original size:26 final size:25
Alignment explanation
Indices: 23614825--23614876 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
23614815 GTTGTCTTAG
* * *
23614825 GCATACGGAGTTCGTTCCATGTCTAA
1 GCATACAGAGTTCATT-CAAGTCTAA
23614851 GCATACAGAGTTCATTCAAGTCTAA
1 GCATACAGAGTTCATTCAAGTCTAA
23614876 G
1 G
23614877 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCAAGTCTAA
Found at i:23615579 original size:26 final size:26
Alignment explanation
Indices: 23615549--23615601 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23615539 GTTGACTTAG
23615549 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCCTA-TCTAA
23615575 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACGGAGTTCATTCCCTATCTAA
23615601 G
1 G
23615602 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 20 0.77
27 6 0.23
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCTATCTAA
Found at i:23616080 original size:26 final size:26
Alignment explanation
Indices: 23616050--23616102 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23616040 GTTGGCTTAG
23616050 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23616076 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23616102 G
1 G
23616103 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23616465 original size:26 final size:26
Alignment explanation
Indices: 23616429--23616481 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23616419 GTTGACTTAG
23616429 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
23616455 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
23616481 G
1 G
23616482 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:23623574 original size:159 final size:159
Alignment explanation
Indices: 23623378--23623714 Score: 374
Period size: 159 Copynumber: 2.1 Consensus size: 159
23623368 AGGCATAGGG
* ** * * ** * *
23623378 AGTTCATTCCATGTCTAAG-CCCTAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCATGCA
1 AGTTCATTCCATGTCTAAGATCGGA-TCGGACCGAGGGTTGCGACAGCAAGACCAACAGCACGCA
* ** * * * * ** *
23623442 AAGGGGGACCGGGTCGATCCTTGGCTTGCGCCTTATGCCT-TTCCGGTCGACTCAGTGCCCGCAT
65 AAGGGGGACCAGGTCGATCCCCGACTTACGCATTATACCTCTT-CGACCGACTCAGTGCCCCCAT
*
23623506 GCTCGTTTCGTGGGTTGACTTAGGCATACAA
129 GCTCGTTTCGTGGGTTGACTTAGCCATACAA
*
23623537 AGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAAGATCAACAGCACGCA
1 AGTTCATT-CCATGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAAGACCAACAGCACGCA
* * * *
23623601 AGGGGGGACCAGGTCGATCCCCGACTTACGCATTCTACCTCTTCGACCGGCTGAGTGCCCCCATG
65 AAGGGGGACCAGGTCGATCCCCGACTTACGCATTATACCTCTTCGACCGACTCAGTGCCCCCATG
* * *
23623666 CTCGTTTTGTGGGTTGGCTTAGCCATACGA
130 CTCGTTTCGTGGGTTGACTTAGCCATACAA
23623696 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
23623715 CATATGGAGT
Statistics
Matches: 146, Mismatches: 28, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
158 3 0.02
159 136 0.93
160 7 0.05
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (159 bp):
AGTTCATTCCATGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAAGACCAACAGCACGCAA
AGGGGGACCAGGTCGATCCCCGACTTACGCATTATACCTCTTCGACCGACTCAGTGCCCCCATGC
TCGTTTCGTGGGTTGACTTAGCCATACAA
Found at i:23623940 original size:197 final size:197
Alignment explanation
Indices: 23623630--23623992 Score: 519
Period size: 197 Copynumber: 1.8 Consensus size: 197
23623620 CCCGACTTAC
* * * * **
23623630 GCATTCTACCTCTTCGACCGGCTGAGTGCCCCCATGCTCGTTTTGTGGGTTGGCTTAGCCATACG
1 GCATTCTACCTCTCCGACCGACTGAGTGCCCCCACGCTCATTTAATGGGTTGGCTTAGCCATACG
* * * *
23623695 AAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGT
66 AAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCCGACCGGACCGAGGGT
* * * *
23623760 TGCAGCAGCAGGACTAGTAGCAGGATTGGTAGCACGCAGGGGGGGATCGAGCCGATCCCCAGCTT
131 TACAGCAACAGGACTAGCAGCAGGATCGGTAGCACGCAGGGGGGGATCGAGCCGATCCCCAGCTT
23623825 GT
196 GT
* * *
23623827 GCATTCTGCCTCTCCGACCGACTGAGTGCCCGCACGCTTATTTAATGGGTTGGCTTAGCCATACG
1 GCATTCTACCTCTCCGACCGACTGAGTGCCCCCACGCTCATTTAATGGGTTGGCTTAGCCATACG
* * * *
23623892 AAGTTCATTGCATGTCTAAGCATACGAAGTTCATTCTCAGTGTAAGATCCGACCGGATCGAGGGT
66 AAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCCGACCGGACCGAGGGT
* *
23623957 TACAGCAATAGGACTAGCAGTAGGATCGGTAGCACG
131 TACAGCAACAGGACTAGCAGCAGGATCGGTAGCACG
23623993 TGGGTTGACT
Statistics
Matches: 143, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
197 143 1.00
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (197 bp):
GCATTCTACCTCTCCGACCGACTGAGTGCCCCCACGCTCATTTAATGGGTTGGCTTAGCCATACG
AAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCCGACCGGACCGAGGGT
TACAGCAACAGGACTAGCAGCAGGATCGGTAGCACGCAGGGGGGGATCGAGCCGATCCCCAGCTT
GT
Found at i:23624051 original size:26 final size:26
Alignment explanation
Indices: 23624008--23624058 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
23623998 TGACTTAGGC
*
23624008 ATACAGAGTTCATCCCCAGTCTAAGG
1 ATACAGAGTGCATCCCCAGTCTAAGG
*
23624034 ATACAGAGTGCATTCCCAGTCTAAG
1 ATACAGAGTGCATCCCCAGTCTAAG
23624059 ATCGATTGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (26 bp):
ATACAGAGTGCATCCCCAGTCTAAGG
Found at i:23624338 original size:158 final size:159
Alignment explanation
Indices: 23624160--23624533 Score: 378
Period size: 159 Copynumber: 2.4 Consensus size: 159
23624150 GACTGAGCGT
* * ** *
23624160 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATTGGGAGTTCATTCCATGTCTAAGCCCCAACCG
1 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCA
* * * * * * *
23624225 GACC-GAGGTTGCGGCAGCGGGACCGGCAGCATGCAGAGGGTGACT-AGGCCGAT-CCCTGACTT
66 GACCAAAGGTTACGGCAGCAGGACCGACAGCACGCAGAGGGGGACTGA-ACCGATCCCCTG-CTT
* *
23624287 GCGCATTATGCCTCTTCGGCCGGCTCAGTGC
129 GCGCATTATGCCTCTCCGACCGGCTCAGTGC
* * * * * *****
23624318 CCGCATGCTCGTTTCGTGGGTTGACTTATGCGTACGGAGTTTATTCCCA-GTCTAAGATTGGACC
1 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACC
* * *
23624382 AGACCAAAGGTTACGGCAGTAGGATCGACAGCACGCAGGGGGGGACTGAACCGATCCCCTGCTTG
65 AGACCAAAGGTTACGGCAGCAGGACCGACAGCACGCAGAGGGGGACTGAACCGATCCCCTGCTTG
* *
23624447 CGCATTCTGCCTCTCCGACCGGCTGAGTGC
130 CGCATTATGCCTCTCCGACCGGCTCAGTGC
* * * ** *
23624477 CCGTACACTCATTTCGTGGGTTGGCTTAGAAATACGAAGTTCATTCCATGTCTAAGC
1 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
23624534 ATACGAAGTT
Statistics
Matches: 170, Mismatches: 41, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
158 53 0.31
159 111 0.65
160 6 0.04
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCA
GACCAAAGGTTACGGCAGCAGGACCGACAGCACGCAGAGGGGGACTGAACCGATCCCCTGCTTGC
GCATTATGCCTCTCCGACCGGCTCAGTGC
Found at i:23624544 original size:26 final size:26
Alignment explanation
Indices: 23624508--23624558 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
23624498 TGGCTTAGAA
*
23624508 ATACGAAGTTCATTCCATGTCTAAGC
1 ATACGAAGTTCATTCCACGTCTAAGC
*
23624534 ATACGAAGTTCATTCCCCGTCTAAG
1 ATACGAAGTTCATTCCACGTCTAAG
23624559 ATTTTAAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCACGTCTAAGC
Found at i:23625250 original size:26 final size:26
Alignment explanation
Indices: 23625220--23625272 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23625210 GTTGGCTTAG
23625220 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
23625246 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
23625272 G
1 G
23625273 ATCGAACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:23625544 original size:159 final size:156
Alignment explanation
Indices: 23625294--23625748 Score: 448
Period size: 159 Copynumber: 2.9 Consensus size: 156
23625284 CCGAAGGTTG
* * * * * * * *
23625294 CGGCAGCAGGATCGGCAGTACGCAGGGGGGAAC-GAGCCGATCCCCGACTTGCGCATTCTACCTT
1 CGGCAGCAGGACCGACAGCACACAGGAGGGACCGGA-CCGATCCCTGGCTTGCGCATTCTACC-T
* * *
23625358 TTCGGCCAGTTGAGCGCCCGCACGCTCGTTTCGTTGGTTGGCTTAGGTGTACAGAGTTCATTCCA
64 TTCGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATAC-GAGTTCATTCCA
*
23625423 TGTCTAAGCCCTAG-CCAGACCAAGGGATG
128 TGTCTAAGCCC-AGACCAGACCAAGGGATA
* * * * ** *
23625452 TGGCTGCAGGACCGACAGCACACAGAGGGGGATCGGGTCGATCCCTGGCTTGCGCATTATACCTT
1 CGGCAGCAGGACCGACAGCACACAG-GAGGGACCGGACCGATCCCTGGCTTGCGCATTCTACCTT
* * * *
23625517 TCCGGTCAGCTCAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCC
65 T-CGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATAC-GAGTTCATT-CC
** * * *
23625582 A-GTCTAAGATCGGACCAGATCAAGGGTTA
127 ATGTCTAAGCCCAGACCAGACCAAGGGATA
* ** * * *
23625611 CGGCAGCAGGATCGACAGCATGCAGGAGGGACCGGACCAATCCCTGGCTTACGCATTCTGCCTCT
1 CGGCAGCAGGACCGACAGCACACAGGAGGGACCGGACCGATCCCTGGCTTGCGCATTCTACCT-T
* * ***
23625676 TCGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTATCCATACGAAGTTCATTCCAT
65 TCGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACG-AGTTCATTCCAT
23625741 GTCTAAGC
129 GTCTAAGC
23625749 ATACAAAGTT
Statistics
Matches: 240, Mismatches: 49, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
157 4 0.02
158 109 0.45
159 123 0.51
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
CGGCAGCAGGACCGACAGCACACAGGAGGGACCGGACCGATCCCTGGCTTGCGCATTCTACCTTT
CGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGAGTTCATTCCATGT
CTAAGCCCAGACCAGACCAAGGGATA
Found at i:23625727 original size:158 final size:157
Alignment explanation
Indices: 23625246--23625747 Score: 517
Period size: 158 Copynumber: 3.2 Consensus size: 157
23625236 CCATGTCTAA
* * *
23625246 GCATATGGAGTTCATTCC-TAGTCTAAGATCGAACCAAACCGAA-GGTTGCGGCAGCAGGATCGG
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGAACCAGACC-AAGGGTTGCGGCAGCAGGATCGA
* * * *
23625309 CAGTACGCAGGGGGGAAC-GAGCCGATCCCCGACTTGCGCATTCTACCTTTTCGGCCAGTTGAGC
64 CAGCACGCAGGGGGGAACGGA-CCGATCCCTGGCTTGCGCATTCTACC-TTTCGGCCAGCTGAGC
*
23625373 GCCCGCACGCTCGTTTCGTTGGTTGGCTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * ** * * * * * *
23625404 GTGTACAGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCAAGGGATGTGGCTGCAGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGAACCAGACCAAGGGTTGCGGCAGCAGGATCGACA
* * ** * * *
23625469 GCACACAGAGGGGGATCGGGTCGATCCCTGGCTTGCGCATTATACCTTTCCGGTCAGCTCAGCGC
66 GCACGCAG-GGGGGAACGGACCGATCCCTGGCTTGCGCATTCTACCTTT-CGGCCAGCTGAGCGC
* *
23625534 CCGCATGCTCGTTTCGTGGGTTGACTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
23625563 GTATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGATCAAGGGTTACGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCAGACCAAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * *
23625627 AGCATGCAGGAGGGACCGGACCAATCCCTGGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGTGC
65 AGCACGCAGGGGGGAACGGACCGATCCCTGGCTTGCGCATTCTACCT-TTCGGCCAGCTGAGCGC
*
23625692 CCGCACGCTCGTTTCGTGGGTTGGCTTAT
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
23625721 CCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
23625748 CATACAAAGT
Statistics
Matches: 275, Mismatches: 61, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
157 5 0.02
158 142 0.52
159 124 0.45
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGAACCAGACCAAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGAACGGACCGATCCCTGGCTTGCGCATTCTACCTTTCGGCCAGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:23625758 original size:26 final size:26
Alignment explanation
Indices: 23625722--23625773 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23625712 TTGGCTTATC
*
23625722 CATACGAAGTTCATT-CCATGTCTAAG
1 CATACAAAGTTCATTCCCA-GTCTAAG
23625748 CATACAAAGTTCATTCCCAGTCTAAG
1 CATACAAAGTTCATTCCCAGTCTAAG
23625774 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (26 bp):
CATACAAAGTTCATTCCCAGTCTAAG
Found at i:23625946 original size:26 final size:26
Alignment explanation
Indices: 23625916--23625968 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23625906 TTTGACTTAG
*
23625916 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTGCATCCCCAATCTAA
* * *
23625942 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACAGAGTGCATCCCCAATCTAA
23625968 G
1 G
23625969 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTGCATCCCCAATCTAA
Found at i:23625946 original size:195 final size:185
Alignment explanation
Indices: 23625575--23626127 Score: 539
Period size: 195 Copynumber: 2.9 Consensus size: 185
23625565 ATACGGAGTT
* * * * *
23625575 CATTCCCAGTCTAAGATCGGACCAGATCAAGGGTT-ACG--GCAGCAGGATCGACAGCATGCAGG
1 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGA-GATGCAGCAGGATCGACAGCACGCAGG
* * * * **
23625637 AGGGACCGGACCAATCCCTGGCTTACGCATTCTGCCTCTT-CGGCCGGCTGAGTGCCCGCACGCT
65 AGGGA-CGGGCCGATCCCCGGCTTACGCATTCTGCCT-TTCCGACCGGCTGAGCACCCGCACGCT
* ** * * *
23625701 CGTTTCGTGGGTTGGCTTATCCATACGAAGTTCATTCCATGTCTAAGCATACAAAGTT
128 CGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATCCCATATCTAAGCATACAAAGTG
*
23625759 CATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGACTAGCAGCAGGATCGACA
1 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT------G-A-GA-T-GCAGCAGGATCGACA
* * * *
23625824 GCACGCAGG-GGGATCGGGTCGATCCCCAGCTTATGCATTCTGCCTTTCCGATCGGCTGAGCACC
56 GCACGCAGGAGGGA-CGGGCCGATCCCCGGCTTACGCATTCTGCCTTTCCGACCGGCTGAGCACC
* * **
23625888 CGCACGCTCGTTTCATGGTTTGACTTAGGCATAC-AGAGTTCATCCCCA-ATCTAAGCATACGGA
120 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGA-AGTTCAT-CCCATATCTAAGCATACAAA
23625951 GTG
183 GTG
* * *
23625954 CATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGAGAT--AGCAGGATCGACAGGACGCAGGT
1 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAGATGCAGCAGGATCGACAGCACGCAGGA
* * * * *
23626017 GGGACTGGGCCGATCCTCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCACCCGCATGCCCG
66 GGGAC-GGGCCGATCCCCGGCTTACGCATTCTGCCTTTCCGACCGGCTGAGCACCCGCACGCTCG
* ** * *
23626082 TTTCATGGGTTGGCTTAGGCATAGGGGGTTCATTCCATGTCTAAGC
130 TTTCATGGGTTGGCTTAGGCATACGAAGTTCATCCCATATCTAAGC
23626128 CCCAGCCGGA
Statistics
Matches: 303, Mismatches: 47, Indels: 38
0.78 0.12 0.10
Matches are distributed among these distances:
183 25 0.08
184 118 0.39
186 1 0.00
187 2 0.01
188 1 0.00
189 1 0.00
192 2 0.01
194 3 0.01
195 124 0.41
196 26 0.09
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (185 bp):
CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAGATGCAGCAGGATCGACAGCACGCAGGA
GGGACGGGCCGATCCCCGGCTTACGCATTCTGCCTTTCCGACCGGCTGAGCACCCGCACGCTCGT
TTCATGGGTTGGCTTAGGCATACGAAGTTCATCCCATATCTAAGCATACAAAGTG
Found at i:23626127 original size:184 final size:183
Alignment explanation
Indices: 23625565--23626127 Score: 594
Period size: 184 Copynumber: 3.0 Consensus size: 183
23625555 TGACTTAGGT
* * * **
23625565 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAGGGTT-ACGGCAGCAGGATCGACAG
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGACGATAGCAGGATCGACAG
* * * * * * **
23625629 CATGCAGGAGGGACCGGACCAATCCCTGGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGTGCCC
66 CACGCAGG-GGGACTGGGCCGATCCC-GGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCACCC
* ** *
23625694 GCACGCTCGTTTCGTGGGTTGGCTTATCCATACGAAGTTCATTCCATGTCTAAGC
129 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
** * *
23625749 ATACAAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGACTAGCAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTT---G-A-C--GA-T---AGC
* * * * *
23625814 AGGATCGACAGCACGCAGGGGGA-TCGGGTCGATCCCCAGCTTATGCATTCTGCCTTTCCGATCG
55 AGGATCGACAGCACGCAGGGGGACT-GGGCCGAT-CCCGGCTTACGCATTCTGCCTCTCCGACCG
* * * * *
23625878 GCTGAGCACCCGCACGCTCGTTTCATGGTTTGACTTAGGCATACAGAGTTCATCCCCA-ATCTAA
118 GCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
23625942 GC
182 GC
*
23625944 ATACGGAGTGCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGA-GATAGCAGGATCGACAG
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGACGATAGCAGGATCGACAG
* *
23626008 GACGCAGGTGGGACTGGGCCGATCCTCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCACCC
66 CACGCAGG-GGGACTGGGCCGATCC-CGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCACCC
* * * *
23626073 GCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGGGTTCATTCCATGTCTAAGC
129 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
23626128 CCCAGCCGGA
Statistics
Matches: 308, Mismatches: 52, Indels: 38
0.77 0.13 0.10
Matches are distributed among these distances:
183 26 0.08
184 125 0.41
185 1 0.00
186 1 0.00
187 2 0.01
189 1 0.00
190 1 0.00
191 1 0.00
192 2 0.01
195 121 0.39
196 27 0.09
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (183 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGACGATAGCAGGATCGACAG
CACGCAGGGGGACTGGGCCGATCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCACCCGC
ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
Found at i:23626422 original size:157 final size:155
Alignment explanation
Indices: 23625942--23626443 Score: 472
Period size: 158 Copynumber: 3.2 Consensus size: 155
23625932 CCCAATCTAA
* * * *
23625942 GCATACGGAGTGCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGAGATAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAAGGTTGAGACAGCAGGATCGACA
* * * * * * *
23626007 GGACGCAGGTGGGACTGGGCCGATCCTCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCACC
65 GCACGCAGGGGGGACCGAGCCGATCCTC-GCTTGCGCA-TCTACCTCTCCGATCGGCTGAGCGCC
* * * *
23626072 CGCATGCCCGTTTCATGGGTTGGCTTAG
128 CGTACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * * *
23626100 GCATAGGGGGTTCATTCCATGTCTAAGCCCCAG-CCGGACCG-AGGTTGTGGCTGCGGGACCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAAGGTTGAGACAGCAGGATCGAC
* * * ** *
23626163 AGCACGTAGAGGGGGACCGAGCCGATCCTCGACTTAG-GCAT-TATGCCTCTTCGGTCAACTCAG
64 AGCACGCAG-GGGGGACCGAGCCGATCCTCG-CTT-GCGCATCTA--CCTCTCCGATCGGCTGAG
* *
23626226 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAT
124 CGCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
23626258 GCGTACGGAGTTCATTCTCACTCTAAGGTCAGACCGGACCGAAGGATGCGACAGCAGGATCGATA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGACCGGACCGAAGGTTGAGACAGCAGGATCGACA
* * *
23626323 GCACGCAGGGGGGACCGAACCAATCCCCTGCTTGCGCATCTACCTCTCCGATCGGCTGAGCGCCC
65 GCACGCAGGGGGGACCGAGCCGATCCTC-GCTTGCGCATCTACCTCTCCGATCGGCTGAGCGCCC
*
23626388 GTACGCTCATTTCGTGGGTTGGCTTAG
129 GTACGCTCGTTTCGTGGGTTGGCTTAG
*
23626415 GCATACGGAGTTCATTCCCCGTCTAAGAT
1 GCATACGGAGTTCATT-CCAGTCTAAGAT
23626444 TTTGAGCCAC
Statistics
Matches: 269, Mismatches: 61, Indels: 29
0.75 0.17 0.08
Matches are distributed among these distances:
156 2 0.01
157 96 0.36
158 140 0.52
159 31 0.12
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAAGGTTGAGACAGCAGGATCGACAG
CACGCAGGGGGGACCGAGCCGATCCTCGCTTGCGCATCTACCTCTCCGATCGGCTGAGCGCCCGT
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:23627159 original size:158 final size:158
Alignment explanation
Indices: 23626790--23627184 Score: 431
Period size: 158 Copynumber: 2.5 Consensus size: 158
23626780 GTGCATTCTA
* * * * *
23626790 CCTCTCTGGCTAGCTAAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCAT
1 CCTCTCCGGCTGGCTAAGCGCCC-CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
* ** * *
23626855 TCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAGGGGGA
65 TCCATGTCTAAGCCCCAGCCGGACCGAAGGTTAAGGCAGCAGGACCGACAGAACACAGAGGGGGA
*
23626920 CCGAGTCGATCCCCGGCTTGCGCATTATG
130 CCGAGTCGATCCCCGGCTTGCACATTATG
* * * * * ** *
23626949 GCTCCCCGG-TCGGCTTAGTGCCCCTACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCA
1 CCTCTCCGGCT-GGCTAAGCGCCCC-ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
** * * ** *
23627013 TTCTCA-GTCTAAG-ATCGGATCGGACCGAAGGTTAAGGCAGCAGGATTGACAGAACGCAG-GGG
64 TTC-CATGTCTAAGCCCCAG-CCGGACCGAAGGTTAAGGCAGCAGGACCGACAGAACACAGAGGG
* *
23627075 GGATCG-GATCGATCCCCGGCTTGCACATTTTG
127 GGACCGAG-TCGATCCCCGGCTTGCACATTATG
*
23627107 CCTCTCCGGCTGGCTAAGCGCCCACACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCCGGCTGGCTAAGCGCCC-CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
23627172 TCCATGTCTAAGC
65 TCCATGTCTAAGC
23627185 ATACGGAGTT
Statistics
Matches: 190, Mismatches: 37, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
157 3 0.02
158 95 0.50
159 90 0.47
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
CCTCTCCGGCTGGCTAAGCGCCCCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
CCATGTCTAAGCCCCAGCCGGACCGAAGGTTAAGGCAGCAGGACCGACAGAACACAGAGGGGGAC
CGAGTCGATCCCCGGCTTGCACATTATG
Found at i:23627207 original size:26 final size:26
Alignment explanation
Indices: 23627157--23627209 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23627147 GTTGGCTTAG
*
23627157 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
23627183 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
23627209 G
1 G
23627210 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:23628082 original size:26 final size:26
Alignment explanation
Indices: 23628033--23628085 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23628023 GTTGGCTTAG
*
23628033 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTACATGTCTAA
23628059 GCATACGAAGTTCATTTACA-GTCTAA
1 GCATACGAAGTTCA-TTACATGTCTAA
23628085 G
1 G
23628086 ATCAGACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTACATGTCTAA
Found at i:23628446 original size:26 final size:26
Alignment explanation
Indices: 23628416--23628468 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23628406 GTAGACTTAG
23628416 GCATACAGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
*
23628442 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
23628468 G
1 G
23628469 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:23628594 original size:885 final size:871
Alignment explanation
Indices: 23626806--23628972 Score: 2473
Period size: 885 Copynumber: 2.5 Consensus size: 871
23626796 TGGCTAGCTA
*
23626806 AGCGCCCGCACGCCCGTTTC-ATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCC
1 AGCGCCCGCACGCCCGTTTCGA-GGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAG-CC
* ** *
23626870 CAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAGGGGGACCGAGTCGATCCCCG
63 CAGCCGGACAGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGACCGGGTCGATCCCCG
* * * ** * * *
23626935 GCTTGCGCATTATGGCTCCCCGGTCGGCTTAGTGCCCCTACGCTCATTTTGTGGGTTGACTTAGG
128 GCTTGCGCATTATGCCTTCTCGACCGGCTCAGCGCCCC-ACGCTCATTTCGTGGGTTGACTTAGG
* * *
23627000 CATACGGAGTTCATTCTCAGTCTAAGATCGGA-TCGGACCGA-AGGTTAAGGCAGCAGGATTGAC
192 CATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGAACGAGA-GTTACGGCAGCAGGATTGAC
* * * * *
23627063 AGAACGCAGGGGGGATCGGATCGATCCCCGGCTTGCACATTTTGCCTCTCCGGCTGGCTAAGCGC
255 AAAACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCACATTTTGCCTCTTCGGCCGGCTGAGCGC
* * * *
23627128 CCACACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
320 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAG
* * * * * * *
23627193 TTCATTCCCAATCTAAGATCGGACCGAACTGAGGGTTGTGGCAGTAGGACCAACAGCAGGATCGG
385 TTCATTCACAATCTAAGATCAGACAGAACCGAGGGTTGAGGCAGCAAGACCAACAGCAGGATCGG
* * *
23627258 CAGCACATAAGGGGGGACCGGGTCATCCCCGACTTGCGCATTCTACCTCTCTGGCCAGCTAAGCA
450 CAGCACATAAGGGGGGACCGGGCCATCCCCGACTTGCGCATTCTACCTCTCCGACCAGCTAAGCA
23627323 CCCGCACGCTCGATTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCC
515 CCCGCACGCTCGATTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCC
* * *
23627388 GAACCAAGGGTTGTGGTAGTAGGACCGGCATCGGCAGCACGTAGAAGGGGACCGGGCCGATCCCC
580 GAACCAAGGGTTGTGGTAGCAGGACCGGCATCGGCAACACGCAGAAGGGGACCGGGCCGATCCCC
* * * * * *
23627453 GGCTTGTGCATTACGCATCTCCGGCCAGCTTCTCCGGCTTACTGAGTGCCCGCACGCTCGTTTCG
645 AGCTTGTGCATTACGCATCTCCGACCAGCCTCTCCGGCTGACTGAGCGCCCGCACGCTCGTTTCA
* * **
23627518 TGGGTTGACTTAAGCATACGGAGTTCATCGGTAGTCTAGCCATACAGAGTTCATTCCCAGTCTAA
710 TGGGTAGACTTAAGCATACAGAGTTCATCGCCAGTCTAGCCATACAGAGTTCATTCCCAGTCTAA
* *
23627583 GATCGGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACACAGAGGGGACCAGGCCAATCC
775 GATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACACAGAGGGGACCAGG-CAATCC
23627648 TCGGCTTGCACATTCTGCCTCTCCGAACGGCTG
839 TCGGCTTGCACATTCTGCCTCTCCGAACGGCTG
** *** * * *
23627681 AAAGCCCGCACATTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTATGCCGC
1 AGCGCCCGCACGCCCGTTTCGAGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCC-C
* * * * *
23627746 AGTCGGACTGAGGGTTGTGGCAACGGGACCGACAGCATGTAGAGAGGGACCGGGTCGATCCCCGG
64 AGCCGGACAGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGACCGGGTCGATCCCCGG
* ** * *
23627811 TTTGTTCATTATGCCTATCTC-ACCGGCTCAACGCCCACACGCTCCTTTCGTGGGTTGACTTAGG
129 CTTGCGCATTATGCCT-TCTCGACCGGCTCAGCGCCC-CACGCTCATTTCGTGGGTTGACTTAGG
* * * *
23627875 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGAGTTACGGTAGCAAGATTGATAA
192 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAACGAGAGTTACGGCAGCAGGATTGACAA
* * * * * *
23627940 AACGTAGGGTGGGATCGGGCCGATCCTCGGCTTACACATTCTGCCTCTTCGACCGGCTGAGCGCC
257 AACGCAGGG-GGGATCGGGTCGATCCCCGGCTTGCACATTTTGCCTCTTCGGCCGGCTGAGCGCC
* *
23628005 CGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGT
321 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGT
* * * *
23628070 TCATTTACAGTCTAAGATCAGACAGGACCGAGGGTTGCAGGCAGCAAGACCAGCAGCAGGATCGG
386 TCATTCACAATCTAAGATCAGACAGAACCGAGGGTTG-AGGCAGCAAGACCAACAGCAGGATCGG
* * * * * * * *
23628135 TAGCACA-CAGGCAGGGGACCGGGCCGATCCTCGGCTTGCGTATTTTGCCTCTCCGACCGGCTAA
450 CAGCACATAAGG--GGGGACCGGGCC-ATCCCCGACTTGCGCATTCTACCTCTCCGACCAGCTAA
* * *
23628199 GCGCCCGTACGTTC-ATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCC
512 GCACCCGCACGCTCGATTT-GTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCC
* * * *
23628263 AGCC-AGACCGAGGGTTGTGGTAGCAGGATCGACAGTGAGATCGGTAACACGCAGAAGGGGATCG
576 AGCCGA-ACCAAGGGTTGTGGTAGCAGGA-C--C-G-G-CATCGGCAACACGCAGAAGGGGACCG
* * * ** *
23628327 GGCTGATCCCCAGCTTGTGCATTATGCCTCTCCGACTGGCCTCTCCGG-TCGGCTGAGCGCCCGC
634 GGCCGATCCCCAGCTTGTGCATTACGCATCTCCGACCAGCCTCTCCGGCT-GACTGAGCGCCCGC
* * * *
23628391 ACGCTTGTTTCATGGGTAGACTTAGGCATACAGAGTTCATCTCCAGTCTAAG-CATACGGAGTTC
698 ACGCTCGTTTCATGGGTAGACTTAAGCATACAGAGTTCATCGCCAGTCT-AGCCATACAGAGTTC
* * ** * * **
23628455 ATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCAGGATTGATAGCACGTAG-GGGA
762 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACACAGAGGG-
* * **
23628519 GACCGAGTG-GATCC-CAGGCTTGCGCATTCTGCCTCTCCGGTCGGCTG
826 GACC-AG-GCAATCCTC-GGCTTGCACATTCTGCCTCTCCGAACGGCTG
*
23628566 AGCGCTCGCACGCCCGTTTCGAGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGTCCC
1 AGCGCCCGCACGCCCGTTTCGAGGGTTGGCTTAGGCATAGG-AGTTCATTCCATGTCTAAG-CCC
* ** * * * **
23628631 AGCCGGACAGAGGGTTGTGGCAGTGGGATTGGCAACACGTAAAGGGGGACCGGACCGATCCCCGG
64 AGCCGGACAGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGACCGGGTCGATCCCCGG
* * * * * *
23628696 CTTGCGCATTATGCC-TCTTCGACCAGCGCAGCACACGCACGCTCGTTTCGTGGGTTGACTTATG
129 CTTGCGCATTATGCCTTC-TCGACCGGCTCAGCGC-CCCACGCTCATTTCGTGGGTTGACTTAGG
* ** * * *
23628760 CATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CAAACTGAGGGTTGCTGCCA-CAGGATTGAC
192 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAAC-GAGAGTTAC-GGCAGCAGGATTGAC
* * * ** *
23628823 AGCAA-GCAGGGGCAGATCGGGTCAATCCCCGGCTTGCGTATTTTGCCTC-TCTGGCCTGCTGAG
255 A-AAACGCAGGGG-GGATCGGGTCGATCCCCGGCTTGCACATTTTGCCTCTTC-GGCCGGCTGAG
*
23628886 CGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAATA-
317 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC-ATAC
* *
23628950 GGAGTTCAATC-CAAATCTAAGAT
381 GAAGTTCATTCAC-AATCTAAGAT
23628973 TTTGAGCCAT
Statistics
Matches: 1074, Mismatches: 181, Indels: 64
0.81 0.14 0.05
Matches are distributed among these distances:
874 2 0.00
875 216 0.20
876 143 0.13
877 29 0.03
878 16 0.01
879 110 0.10
880 1 0.00
882 1 0.00
883 3 0.00
884 16 0.01
885 522 0.49
886 14 0.01
887 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (871 bp):
AGCGCCCGCACGCCCGTTTCGAGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCAG
CCGGACAGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCT
TGCGCATTATGCCTTCTCGACCGGCTCAGCGCCCCACGCTCATTTCGTGGGTTGACTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCGGACTGGAACGAGAGTTACGGCAGCAGGATTGACAAAACG
CAGGGGGGATCGGGTCGATCCCCGGCTTGCACATTTTGCCTCTTCGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATT
CACAATCTAAGATCAGACAGAACCGAGGGTTGAGGCAGCAAGACCAACAGCAGGATCGGCAGCAC
ATAAGGGGGGACCGGGCCATCCCCGACTTGCGCATTCTACCTCTCCGACCAGCTAAGCACCCGCA
CGCTCGATTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCA
AGGGTTGTGGTAGCAGGACCGGCATCGGCAACACGCAGAAGGGGACCGGGCCGATCCCCAGCTTG
TGCATTACGCATCTCCGACCAGCCTCTCCGGCTGACTGAGCGCCCGCACGCTCGTTTCATGGGTA
GACTTAAGCATACAGAGTTCATCGCCAGTCTAGCCATACAGAGTTCATTCCCAGTCTAAGATCGG
ACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACACAGAGGGGACCAGGCAATCCTCGGCTT
GCACATTCTGCCTCTCCGAACGGCTG
Found at i:23628803 original size:159 final size:158
Alignment explanation
Indices: 23628442--23628944 Score: 540
Period size: 159 Copynumber: 3.2 Consensus size: 158
23628432 TCCAGTCTAA
* *
23628442 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCAGGATTGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATTGAC
* * * * * *
23628506 AGCACGTAGGGGAGACC-GAGTGGATCCCAGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
65 AGCACGTAGGGGAGACCGGA-TCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCAGCTGAGCG
* *
23628570 CTCGCACGCCCGTTTCGAGGGTTGGCTTAG
129 CTCGCACGCTCGTTTCGTGGGTTGGCTTAG
* **
23628600 GCATA-GGAAGTTCATTCCATGTCTAAG-TCCCAG-CCGGACAGAGGGTTGTGGCAGTGGGATTG
1 GCATACGG-AGTTCATTCCATGTCTAAGAT--CAGACCGGACTGAGGGTTGTGGCAGCAGGATTG
* * * *
23628662 GCAACACGTAAAGGGG-GACCGGACCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCAGC-GC
63 ACAGCACGT--AGGGGAGACCGGATCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCAGCTG-
* * * *
23628725 AGCACACGCACGCTCGTTTCGTGGGTTGACTTAT
125 AGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAG
** *
23628759 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAAACTGAGGGTTGCTGCCA-CAGGATTGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTG-TGGCAGCAGGATTGA
* * * * * * * *
23628822 CAGCAAGCAGGGGCAGATCGGGTCAATCCCCGGCTTGCGTATTTTGCCTC-TCTGGCCTGCTGAG
64 CAGCACGTAGGGG-AGACCGGATCGATCCCCGGCTTGCGCATTATGCCTCTTC-GGCCAGCTGAG
23628886 CGCTCGCACGCTCGTTTCGTGGGTTGGCTTAG
127 CGCTCGCACGCTCGTTTCGTGGGTTGGCTTAG
23628918 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
23628945 CAATAGGAGT
Statistics
Matches: 284, Mismatches: 43, Indels: 35
0.78 0.12 0.10
Matches are distributed among these distances:
157 11 0.04
158 61 0.21
159 194 0.68
160 18 0.06
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATTGACA
GCACGTAGGGGAGACCGGATCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCAGCTGAGCGCT
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:23630050 original size:159 final size:158
Alignment explanation
Indices: 23629673--23630166 Score: 459
Period size: 159 Copynumber: 3.1 Consensus size: 158
23629663 TAAGAATATG
* * * * * **
23629673 GAGTTCATTCC-CAGTCTAAGATTAGACCGGATCAAGGGTTGCAACAGCAGGATCGACAGCACGC
1 GAGTTCATTCCAC-GTCTAAGATCAAATCGGACCGAGGGTTGCTGCAGCAGGATCGACAGCACGC
* * * *
23629737 -AGGGGGTACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCG-AA
65 AAAGGGG-ACCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCAA
23629800 -CGTCAGTTTCATGGGTTGGCTTAGGCATA-A
129 GC-TCA-TTTCATGGGTTGGCTTAGGCATACA
* ** * * * * * * * *
23629830 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTT-TTGGTAACGGGA-CTGGCAGCAC
1 -GAGTTCATTCCACGTCTAAGATCAAATCGGACCGAGGGTTGCT-GCAGCAGGATC-GACAGCAC
* * * * **
23629893 GCAAAAGGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAACGCCCGC
63 GC-AAAGGGGACCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGC
* * *
23629958 AGGCTCATTTCATGGGTTGACTTAGACATACA
127 AAGCTCATTTCATGGGTTGGCTTAGGCATACA
*
23629990 GAGTTCATTCC-CAGTCTAAGATCAAATCGGACCGAGGGTTGCTGCAGCAGGATCGACAGCACGT
1 GAGTTCATTCCAC-GTCTAAGATCAAATCGGACCGAGGGTTGCTGCAGCAGGATCGACAGCACGC
* * * * * * *
23630054 AGAAGGGGATCGAGACAATCCTTGGCTTGCGCA-TCTGCCTCTCCAGCCTGCTGAGTGCCCACAA
65 A-AAGGGGACCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCAA
*
23630118 GCTCATTTTATGGGTTGGCTTAGGCATACCA
129 GCTCATTTCATGGGTTGGCTTAGGCATA-CA
23630149 -AGTTCATTCCACGTCTAA
1 GAGTTCATTCCACGTCTAA
23630167 CCATACTGAG
Statistics
Matches: 262, Mismatches: 60, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
157 1 0.00
158 105 0.40
159 143 0.55
160 12 0.05
161 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCACGTCTAAGATCAAATCGGACCGAGGGTTGCTGCAGCAGGATCGACAGCACGCA
AAGGGGACCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCAAGC
TCATTTCATGGGTTGGCTTAGGCATACA
Found at i:23632356 original size:26 final size:26
Alignment explanation
Indices: 23632319--23632371 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
23632309 ATTGACTTAG
23632319 GCATACAGAGTT-CATCCCTAGTCTAA
1 GCATACAGAGTTCCATCCC-AGTCTAA
*
23632345 GCATAC-GAAGTTCCTTCCCAGTCTAA
1 GCATACAG-AGTTCCATCCCAGTCTAA
23632371 G
1 G
23632372 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 18 0.75
27 5 0.21
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCCATCCCAGTCTAA
Found at i:23632723 original size:159 final size:158
Alignment explanation
Indices: 23632345--23632847 Score: 487
Period size: 159 Copynumber: 3.2 Consensus size: 158
23632335 CCTAGTCTAA
* * * *
23632345 GCATACGAAGTTCCTTCCCA-GTCTAAGATCGGACCGAACCGAGGGTTGC-AGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCAGGATCGA
* * * * * * *
23632408 CAGCACGTAGGGGGTATCGGGCAGAT-CTCCGGCTTACGCATTCCGTCTCTCCGGTCGGCTGAAC
64 CAACACGTAGGGGGGACCGGGCCGATCCT-CGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGC
* *
23632472 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * * * *
23632503 GCATAGGGAGTTCATTCCATGTGTAAG-CCCTAGCTGGACCGAGGGTTGTGGCAG-TGAGATCGG
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTGCGACAGCAG-GATCGA
* * * *
23632566 CAACACGTAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGTCAGCTCAGC
64 CAACACGTAG-GGGGGACCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGC
* * *
23632631 CCCCGCACGCTCGTTTCGTGGGTTGACTTGG
128 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
23632662 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTACGACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGAC
** * * * * ** ** * *
23632726 AAGCACACAGGGGGGACCGTGTCGGTCCCCAACTTACGCATTCTGCCTCTCCGACCGGTTGAGGA
65 AA-CACGTAGGGGGGACCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCA
* *
23632791 CCCACACGCTCGTTTCGTGGGTTGGCTTAA
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
23632821 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
23632848 CATACGAAGT
Statistics
Matches: 273, Mismatches: 61, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 6 0.02
158 51 0.19
159 203 0.74
160 13 0.05
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
ACACGTAGGGGGGACCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCACC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:23632858 original size:26 final size:26
Alignment explanation
Indices: 23632818--23632873 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
23632808 TGGGTTGGCT
*
23632818 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGAAGTTCATTCCCA-GTC
23632844 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
23632870 TAAG
1 TAAG
23632874 ATCAAACCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:23633548 original size:158 final size:157
Alignment explanation
Indices: 23633102--23633558 Score: 411
Period size: 159 Copynumber: 2.9 Consensus size: 157
23633092 GATCAAGTGT
* * * *
23633102 TGCGGCAGCAGGA-TCAGCAGCACGCAAGAGGGGACTGGGTCGATCCCCGACTTGTGCATTCTGC
1 TGCGGCAGCAGGATTGA-CAGCACG-AAGGGGGGAC-GGGTCGATCCCCGACTTGCGCATTATGC
* * * *
23633166 CTATCCGGCCGATTGAGTGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATT
63 CTCTCCGGCCGACTGAGCGCCCGAACGCCCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATT
* * *
23633231 CC-ATGTCTAAGCCCTAGCCGGACCGAGGGT
128 CCTA-GTCTAAGACCTAGCCGAACCGAGGGC
* * * ** * * ** * *
23633261 TGTGGCAGCGGGATCGGTAGCAC-ACAGAGGGGGACCAGGTAGATCCTTGGCTTGCGTATTATGC
1 TGCGGCAGCAGGATTGACAGCACGA-AG-GGGGGA-CGGGTCGATCCCCGACTTGCGCATTATGC
* * * * * * * *
23633325 CTCTCCGACCGGCTCAGCACCCGAACGCCCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATT
63 CTCTCCGGCCGACTGAGCGCCCGAACGCCCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATT
* * *
23633390 CCTAGTCTAAGATC-AGATCGAACTGAGGGC
128 CCTAGTCTAAGACCTAG-CCGAACCGAGGGC
* * * *
23633420 TGCGGCAGCAGGATTGACAGCACGAAGGGGGGATCGGGCCGATCCCCGTCTTACGCATTTTGCCT
1 TGCGGCAGCAGGATTGACAGCACGAAGGGGGGA-CGGGTCGATCCCCGACTTGCGCATTATGCCT
* * * * *
23633485 CTCTGGCCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTACATTCC
65 CTCCGGCCGACTGAGCGCCCGAACGCCCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCC
23633550 ATA-TCTAAG
130 -TAGTCTAAG
23633559 CATACGAAGT
Statistics
Matches: 229, Mismatches: 61, Indels: 17
0.75 0.20 0.06
Matches are distributed among these distances:
157 1 0.00
158 90 0.39
159 135 0.59
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
TGCGGCAGCAGGATTGACAGCACGAAGGGGGGACGGGTCGATCCCCGACTTGCGCATTATGCCTC
TCCGGCCGACTGAGCGCCCGAACGCCCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCT
AGTCTAAGACCTAGCCGAACCGAGGGC
Found at i:23633777 original size:26 final size:26
Alignment explanation
Indices: 23633729--23633781 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23633719 GTTGACTTAG
**
23633729 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
* *
23633755 GCATACGGAGTGCATTCCTAGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
23633781 G
1 G
23633782 ATCGAATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTGCATCCCCAGTCTAA
Found at i:23633801 original size:197 final size:196
Alignment explanation
Indices: 23633438--23634006 Score: 535
Period size: 184 Copynumber: 3.0 Consensus size: 196
23633428 CAGGATTGAC
* *
23633438 AGCACGAAGGGGGGATCGGGCCGATCCCCGTCTTACGCATTTTGCCTCTCTGGCCGACTGAGCGC
1 AGCACGAAGGGGGGATCGGGCCGATCCCCGTCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGC
* * *
23633503 CCGTACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTACATTCCATATCTAAGCATACGAAG
66 CCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTACATCCCATATCTAAGCATACGAAG
* * *
23633568 TTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGTAGCAGGACCAACAGCAGGATCGG
131 TGCATTCCCAGTCTAAGATCAGAATGGACCGAGGGTTGCGGTAGCAGGACCAACAGCAGGATCGG
23633633 T
196 T
* * **
23633634 AGCACGCAGGGGGCGATCGGGCCGATCCCC-TGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGC
1 AGCACGAAGGGGG-GATCGGGCCGATCCCCGT-CTTACGCATTCTGCCTCTCCGGCCGACTGAGC
* ** *
23633698 GCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATCCCCA-GTCTAAGCATACG
64 GCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTACAT-CCCATATCTAAGCATACG
* *
23633762 GAGTGCATTCCTAGTCTAAGATC-GAATCGGACCGAGGG-T----TA-CA-G-----CAGCAGGA
128 AAGTGCATTCCCAGTCTAAGATCAGAAT-GGACCGAGGGTTGCGGTAGCAGGACCAACAGCAGGA
*
23633814 TCAGT
192 TCGGT
* * * * ** * * *
23633819 AGCATGCAA-TGGGGATCGGGCTGATCCCCAG-CTTACGTATTCTATCTCTCTGACCGGCTGAGC
1 AGCACG-AAGGGGGGATCGGGCCGATCCCC-GTCTTACGCATTCTGCCTCTCCGGCCGACTGAGC
* * * * * * * * *
23633882 ACTCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACG
64 GCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTACAT-CCCATATCTAAGCATACG
* * * ** * * * *
23633946 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCTAGGGTTGCGGTAACAGGATCAGCAGCA
128 AAGTGCATTCCCAGTCTAAGATCAGAATGGACCGAGGGTTGCGGTAGCAGGACCAACAGCA
23634007 CGCAGGGGGG
Statistics
Matches: 311, Mismatches: 42, Indels: 40
0.79 0.11 0.10
Matches are distributed among these distances:
184 127 0.41
185 23 0.07
186 1 0.00
189 2 0.01
190 3 0.01
191 3 0.01
192 2 0.01
196 22 0.07
197 125 0.40
198 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (196 bp):
AGCACGAAGGGGGGATCGGGCCGATCCCCGTCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGC
CCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTACATCCCATATCTAAGCATACGAAG
TGCATTCCCAGTCTAAGATCAGAATGGACCGAGGGTTGCGGTAGCAGGACCAACAGCAGGATCGG
T
Found at i:23633942 original size:26 final size:26
Alignment explanation
Indices: 23633913--23633965 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23633903 GTTGGCTTAG
23633913 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
23633939 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23633965 G
1 G
23633966 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23633964 original size:184 final size:185
Alignment explanation
Indices: 23633621--23634124 Score: 521
Period size: 184 Copynumber: 2.7 Consensus size: 185
23633611 GCAGGACCAA
* * * * *
23633621 CAGCAGGATCGGTAGCACGCAGGGGGCGATCGGGCCGATCCCCTGCTTGCGCATTCTGCCTCTCC
1 CAGCAGGATCAGTAGCACGCAAGGGGCGATCGGGCCGATCCCCAGCTTACGCATTCTACCTCTCC
* * * * * *
23633686 GGCCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATCCCCAGT
66 GACCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
* *
23633751 CTAAGCATACGGAGTGCATTCCTAGTCTAAGATCGAATCGGACCGAGGGTTACAG
131 CTAAGCATACGGAGTGCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACAG
* * * * * *
23633806 CAGCAGGATCAGTAGCATGCAATGGG-GATCGGGCTGATCCCCAGCTTACGTATTCTATCTCTCT
1 CAGCAGGATCAGTAGCACGCAAGGGGCGATCGGGCCGATCCCCAGCTTACGCATTCTACCTCTCC
* * *
23633870 GACCGGCTGAGCACTCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGT
66 GACCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
* * * * *
23633935 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCTAGGGTTGCGG
131 CTAAGCATACGGAGTGCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACAG
* * * * * * * **
23633990 TAACAGGATCAGCAGCACGC-AGGGGGGA-CTAGGCCGATTCCTAGCTTGTGCATTCTACCTCTC
1 CAGCAGGATCAGTAGCACGCAAGGGGCGATC-GGGCCGATCCCCAGCTTACGCATTCTACCTCTC
** * * * * ** * * * * *
23634053 CGGTCGACTGATCGCCCGCATGCCAATTTTGTTGGTTGGCTTAGGCATAGGGAGTTCAT-TCCAT
65 CGACCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-
23634117 GTCTAAGC
129 GTCTAAGC
23634125 CCAAGTCGGA
Statistics
Matches: 263, Mismatches: 53, Indels: 7
0.81 0.16 0.02
Matches are distributed among these distances:
183 8 0.03
184 233 0.89
185 22 0.08
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (185 bp):
CAGCAGGATCAGTAGCACGCAAGGGGCGATCGGGCCGATCCCCAGCTTACGCATTCTACCTCTCC
GACCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
CTAAGCATACGGAGTGCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACAG
Found at i:23634442 original size:26 final size:26
Alignment explanation
Indices: 23634413--23634465 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23634403 GTTGGCCTAG
*
23634413 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
23634439 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
23634465 G
1 G
23634466 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:23634614 original size:26 final size:25
Alignment explanation
Indices: 23634578--23634629 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
23634568 GTTGACGTAG
23634578 GCATACGGAGTTC-TTCCCTAGTCTAA
1 GCATACGGAGTTCATT-CC-AGTCTAA
23634604 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
23634629 G
1 G
23634630 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 8 0.32
26 15 0.60
27 2 0.08
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:23634959 original size:26 final size:26
Alignment explanation
Indices: 23634920--23634972 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23634910 TTTGGCTTAG
* *
23634920 GCATACGGATTTCATT-CCACGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
23634946 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
23634972 G
1 G
23634973 AGTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:23636273 original size:171 final size:171
Alignment explanation
Indices: 23635926--23636470 Score: 620
Period size: 171 Copynumber: 3.2 Consensus size: 171
23635916 CGTACACTCA
* * **
23635926 TTTCATGGGTTGACTTAGGCATACAGAGTTCA-TTCCTAGTCTAAGATC-AGATCGGATCA-AGG
1 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTTCAT-GTCTAAGCCCTAG-TCGGATCAGAGG
* * * *
23635988 GTTGTGGCAGCAGGACCAGCAGCAAGATCGACAGCACATAG-GGGGGATC-AGGTCGATCCTCGG
64 GTTGTGGCAGCAGGACCGGCAGCAAGATCGGCAGCACACAGAGGGGGATCGAGCT-GATCC-CGG
* *
23636051 CTTGCACATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCA
127 CTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCG
* * *
23636096 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCTAGTCAGA-CAGAGGGT
1 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTTCATGTCTAAGCCCTAGTCGGATCAGAGGGT
* * * * * *
23636160 TGTGACAACAGGATCGGAAGCAAGATTGGCAGCACGCAGAGGGGGATCGAGCTGATCCACGGCTT
66 TGTGGCAGCAGGACCGGCAGCAAGATCGGCAGCACACAGAGGGGGATCGAGCTGATCC-CGGCTT
* * * *
23636225 GTGCATTCTGCCTCTCTGGCCGACTGAGCACCCGCACGCTCG
130 GCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCG
* * *
23636267 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCGAAGCCCTAG-CTGGATC-GAGGG
1 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTTCATGTCTAAGCCCTAGTC-GGATCAGAGGG
** * * * * * *
23636330 TTGTGGCAGCAGGACCGGCAGCGGGATCAGCAGCACACAGAGGAGGACCGGGCTGATCCCTGACA
65 TTGTGGCAGCAGGACCGGCAGCAAGATCGGCAGCACACAGAGGGGGATCGAGCTGATCCC-GGCT
* * *
23636395 AGCGCATTATGCCTCTCCGACCGACTGAGCGCCCGTACGCTCG
129 TGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCG
* *
23636438 TTTCGTGGGTTGACTTAGGCGTACGGAGTTCAT
1 TTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
23636471 ACCCAGTCTA
Statistics
Matches: 315, Mismatches: 52, Indels: 15
0.82 0.14 0.04
Matches are distributed among these distances:
169 2 0.01
170 78 0.25
171 231 0.73
172 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.22
Consensus pattern (171 bp):
TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTTCATGTCTAAGCCCTAGTCGGATCAGAGGGT
TGTGGCAGCAGGACCGGCAGCAAGATCGGCAGCACACAGAGGGGGATCGAGCTGATCCCGGCTTG
CGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCG
Found at i:23636490 original size:26 final size:26
Alignment explanation
Indices: 23636459--23636508 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
23636449 GACTTAGGCG
23636459 TACGGAGTTCATACCCAGTCTAAGCA
1 TACGGAGTTCATACCCAGTCTAAGCA
*
23636485 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATACCCAGTCTAAG
23636509 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATACCCAGTCTAAGCA
Found at i:23637566 original size:156 final size:156
Alignment explanation
Indices: 23637265--23637568 Score: 389
Period size: 156 Copynumber: 1.9 Consensus size: 156
23637255 CAGGATCGAC
* * *
23637265 AGCACGCAGCGGGATTGAGCTGATCCTCGACTTGTGCATTTCGCCTCTCCGATCGGTTGAACGCC
1 AGCACGCAGCGGGATCGAGCTGATCCTCGACTTGTGCATTTCACCTCTCCGACCGGTTGAACGCC
* * *
23637330 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
66 CGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
*
23637395 ACCAAGGGTTGTGGCAGCGGGTCGGT
131 ACCAAGGGTTCTGGCAGCGGGTCGGT
* * * * **
23637421 AGCACGCAGGGGGGATCGAGCTGATCCTCGGCTTGTGCA-TTCTACCTCTCTGGCCGGTTGAGTG
1 AGCACGCA-GCGGGATCGAGCTGATCCTCGACTTGTGCATTTC-ACCTCTCCGACCGGTTGAACG
* * ** *
23637485 -CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCTTAGTC
64 CCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
*
23637549 GGACCGAA-GGTTCTGGCAGC
129 AGACC-AAGGGTTCTGGCAGC
23637569 AGGACTGACA
Statistics
Matches: 126, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
156 82 0.65
157 44 0.35
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.25
Consensus pattern (156 bp):
AGCACGCAGCGGGATCGAGCTGATCCTCGACTTGTGCATTTCACCTCTCCGACCGGTTGAACGCC
CGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
ACCAAGGGTTCTGGCAGCGGGTCGGT
Found at i:23637698 original size:26 final size:26
Alignment explanation
Indices: 23637668--23637720 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23637658 GTTGACTTAG
23637668 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
23637694 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23637720 G
1 G
23637721 ACCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23638010 original size:159 final size:156
Alignment explanation
Indices: 23637694--23638196 Score: 580
Period size: 159 Copynumber: 3.2 Consensus size: 156
23637684 CCCAGTCTAA
*
23637694 GCATACGGAGTTCATTCC-TAGTCTAAGACCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAT
1 GCATACGGAGTTCATTCCAT-GTCTAAGACCA-ACCGGATCGAGGGTTGCGGCAGCAGGATCGAT
* * **
23637758 AGCACGCATGGGGGATCGGGCCGGTCCCCGGCTTGCACATTCTGCCTCTTCGGTCGGCTAAGCGC
64 AGCACGCAGGGGGGATCGGGCCGGTCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTAA-CGC
* * *
23637823 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 CCGCATGCTCGTTTCGTGGGTTGACTTAG
* * * * *
23637852 GCATACGGAGTTCATTCCATGTCTAAGCCCCAACTGGATCGAGGGTTGTGGCAGCGGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAACCGGATCGAGGGTTGCGGCAGCAGGATCGATA
* ** * *
23637917 GCACGTAGAGGGGGA-CTGGGCCTATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAACG
65 GCACGCAG-GGGGGATC-GGGCCGGTCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCT-AACG
* * *
23637981 CCCGAATGCTCATTTCATGGGTTGACTTAG
127 CCCGCATGCTCGTTTCGTGGGTTGACTTAG
* * * ** * **
23638011 GCATACGAAGTTAATTCCCA-GTCTCAGATCGGACCGGATCGAGGGTTACGATAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGA-CCAACCGGATCGAGGGTTGCGGCAGCAGGATCGAT
* * * *
23638075 AGCACGCAGGAGGGGATCAGGCCGGTCCCCGACTTGCACATTCTGCCTCTCCGACCGACTGAGCG
64 AGCACGCAGG-GGGGATCGGGCCGGTCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCT-AACG
23638140 CCCGCATGCTCGTTTCGTGGGTTGACTTAG
127 CCCGCATGCTCGTTTCGTGGGTTGACTTAG
*
23638170 GCATACGGAGTTGATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
23638197 TATACAGAGT
Statistics
Matches: 285, Mismatches: 50, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
158 64 0.22
159 215 0.75
160 6 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAACCGGATCGAGGGTTGCGGCAGCAGGATCGATAG
CACGCAGGGGGGATCGGGCCGGTCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTAACGCCCG
CATGCTCGTTTCGTGGGTTGACTTAG
Found at i:23638212 original size:26 final size:26
Alignment explanation
Indices: 23638172--23638222 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
23638162 TGACTTAGGC
* *
23638172 ATACGGAGTTGATT-CCATGTCTAAGT
1 ATACAGAGTTCATTCCCA-GTCTAAGT
23638198 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
23638223 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:23638404 original size:26 final size:26
Alignment explanation
Indices: 23638368--23638420 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23638358 GTTGACTTAG
23638368 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
23638394 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
23638420 G
1 G
23638421 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:23638639 original size:184 final size:184
Alignment explanation
Indices: 23638342--23638750 Score: 502
Period size: 184 Copynumber: 2.2 Consensus size: 184
23638332 TGAGCGCCCG
* **
23638342 CACGCTCGTTT-TGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
1 CACGCTCGTTTCT-TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCAAAGCATACAAAGTT
* *
23638406 CATTCCTAGTCTAAGATCAAACTGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGC-AGGAG
65 CATTCCTAGTCTAAGATCAAACTGGACCGAAGGTTACGGCAGCAGGATCGACAGCACGCAAGG-G
* * * * *
23638470 GGACCAGGTCGATCCCCGACTTGCCCATTATGCCTCTTCGGTCAGCTCAGCTCCCA
129 GGACCAGGCCGATCCCCGACTTGCCCATTATGCCTCTCCGGCCAGCTAAGCACCCA
* * *
23638526 CACGCTCGTTTCTTGGGTTGACTTATGCATATGGAGTTCATCCCCAGTCAAAGCATACAAAGTTT
1 CACGCTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCAAAGCATACAAAGTTC
* ** * *
23638591 ATT-CTCAGTCTATGATCGGA-TCGGACCGAAGGTTGCGGCAGTAGGATCGACAGCACGCAAGGG
66 ATTCCT-AGTCTAAGATCAAACT-GGACCGAAGGTTACGGCAGCAGGATCGACAGCACGCAAGGG
* * * * *
23638654 GGACCGGGCCGGTCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGCTAAGCACCCG
129 GGACCAGGCCGATCCCCGACTTGCCCATTATGCCTCTCCGGCCAGCTAAGCACCCA
* * * * *
23638710 CACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
1 CACGCTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCAT
23638751 TCCATGTCTA
Statistics
Matches: 192, Mismatches: 29, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
183 3 0.02
184 185 0.96
185 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.23
Consensus pattern (184 bp):
CACGCTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCAAAGCATACAAAGTTC
ATTCCTAGTCTAAGATCAAACTGGACCGAAGGTTACGGCAGCAGGATCGACAGCACGCAAGGGGG
ACCAGGCCGATCCCCGACTTGCCCATTATGCCTCTCCGGCCAGCTAAGCACCCA
Found at i:23638952 original size:133 final size:133
Alignment explanation
Indices: 23638702--23638953 Score: 287
Period size: 133 Copynumber: 1.9 Consensus size: 133
23638692 CGGCCAGCTA
* * *
23638702 AGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
1 AGCACCCGCACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACC
* * * * *
23638767 AGTCAGACCGAGGGTTGCAGCAGCGGGACTGGCAGCACGCAGAGGGGGACCGGGTTGATCCTCGG
66 AGCCAGACCGAGGGTTACAGCAGCAGGACTGACAACACGCAGAGGGGGACCGGGTTGATCCTCGG
23638832 CTC
131 CTC
* * * *
23638835 AGCACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-AT
1 AGCACCCGCACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAC
* * * * *
23638898 CAGACCGGACCGAGGGTTACGGTAGTAGGA-TCGACAACACGCTG-GGGGGTACCGGG
65 CAG-CCAGACCGAGGGTTACAGCAGCAGGACT-GACAACACGCAGAGGGGG-ACCGGG
23638954 CCCCCGGCTT
Statistics
Matches: 98, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
132 9 0.09
133 86 0.88
134 3 0.03
ACGTcount: A:0.21, C:0.27, G:0.32, T:0.20
Consensus pattern (133 bp):
AGCACCCGCACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACC
AGCCAGACCGAGGGTTACAGCAGCAGGACTGACAACACGCAGAGGGGGACCGGGTTGATCCTCGG
CTC
Found at i:23640094 original size:159 final size:158
Alignment explanation
Indices: 23639916--23640218 Score: 365
Period size: 158 Copynumber: 1.9 Consensus size: 158
23639906 AAGCCCTAGC
* * * * * *
23639916 CGGATCGAGGGTTGTGGCAGCGGGACCGATAGCACGTAGAGAGGTACCGGGCCGATCC-CTGGCG
1 CGGATCGAGGGTTGAGGCAGCAGGACCGACAGCACGCAG-GAGGGACCGGGCCGATCCTC-GACG
* * * * *
23639980 TGCGCATTATGCCTCTTCGACCGGCTTAGCGCCGGCACGCTCGTTTCATGGGTTGACTTATGCAT
64 TGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCAT
23640045 ACGGAGTTCATTCCCAAACTAAGATCAGAT
129 ACGGAGTTCATTCCCAAACTAAGATCAGAT
* * * * * * *
23640075 CGGATCGAGGGTTGAGGCAGCAGGATCGACCGCATGCAGGGGGGATCGGGCCGATTCTCGACTTG
1 CGGATCGAGGGTTGAGGCAGCAGGACCGACAGCACGCAGGAGGGACCGGGCCGATCCTCGACGTG
* * * * * *
23640140 TGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAC
66 CGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATAC
23640205 GGAGTTCATTCCCA
131 GGAGTTCATTCCCA
23640219 GTCTAGGATT
Statistics
Matches: 119, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
158 86 0.72
159 33 0.28
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (158 bp):
CGGATCGAGGGTTGAGGCAGCAGGACCGACAGCACGCAGGAGGGACCGGGCCGATCCTCGACGTG
CGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATAC
GGAGTTCATTCCCAAACTAAGATCAGAT
Found at i:23640942 original size:26 final size:26
Alignment explanation
Indices: 23640905--23640957 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23640895 GTTGACTTAG
*
23640905 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
23640931 GCATAC-AGAGTTCATTCCCAATCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
23640957 G
1 G
23640958 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:23641784 original size:895 final size:905
Alignment explanation
Indices: 23640199--23642011 Score: 2616
Period size: 895 Copynumber: 2.0 Consensus size: 905
23640189 GTTGGCTTAG
* * * * *
23640199 GCATACGGAGTTCATTCCCAGTCTAGGATTTTGAGCCACGGTGCACATGTTGGGCTCGGGCATGT
1 GCATACAGAGTTCATTCCCAGTCTAAGATTTTCAGCCACGATGCACATGCTGGGCTCGGGCATGT
* **
23640264 GCTGGTGCTGCATTTTTTCCCCCGGGGCACCATTGCCGGAGCATCGTCGGAGCATCACCGGAGAG
66 GCTGGTGCAGCATTTTTTCCCCCGGGGCACCATCACCGGAG-A-CGTC-G-GCAT---CGGAGAG
* * * *
23640329 CCTAATCGACGGCATTGGGGGTTCCGGCGACTGGGGGTGCCGGGGGGTGTGCGCACATGATGTGC
124 CCTAACCGACAGCATTGGGGGTTCCGACGACTGGGGGTGCCGGGAGGTGTGCGCACA--ATGTGC
* *
23640394 GATGGGTGCTGGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
187 GAT-GGT-CTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCAAGAACTCACA
*
23640459 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATG
250 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATG
* *
23640524 GGGACACTTTTTTCAAACAGTCACAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTATG
315 AGGACACTTTTTTCAAACAGTCACAAATCTTCTCCACTTCGAGTTTTAAGCTGAATTTTTTTATG
* * *
23640589 CGTGCCAACAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAAT
380 CGTGCCAAAAAAAATACAAGGATCACCTCTACAAAATTTGGGGACAAAACACTTTCTAAAAAAAT
* *
23640654 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCATCTTGC
445 TTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGGGTCATCTTGC
23640719 CACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
510 CACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
23640784 GGCATGGTAGAAATATGAAGATGTGATTGAACCCACCTACCACATGTTCGATCCCCGGCTTACGC
575 GGCATGGCAGAAATATGAAGATGTGATTGAACCCACCTACCACATGTTCGATCCCCAGCTTACGC
* * * * * * *
23640849 ATCTTGCCTCCCTGGTCAGCTGAGCGTCCGTACACTCGTTTCGTGGGTTGACTTAGGCATAC-GA
640 ATCCTGCCTCCCTGGTCAGCTGAGCGCCCGCACACTCGTTTCATGGGTCGAATGAGGCATACAG-
*
23640913 AGTTCATCCCCAGTCTAAGCATACAG-AGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGT
704 AGTTCATCCCCAGTCTAAGCATA-AGAAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGT
* * * * *
23640977 TGC-GACAGCAGGATCGGCAGCACGCAGGGGGGACCGAGTCGATCCTCGGCTTGCGCATTCTGCC
768 TGCAG-CAGCAGGATCGACAACACGCAGGGAGGACCGAGTCGATCCCCGACTTGCGCATTCTGCC
* * * *
23641041 TCTCCGGCCAGCTGAGCACCCGCACACAC-GTTTCGTGGGTTGGCTTGGGCATAGGGAGTTCATT
832 TCTCCAGCCAGCTGAACACCCGCACAC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT
*
23641105 CCACGTCTAA
896 CCACGCCTAA
*
23641115 GCATACAGAGTTCATTCCCAGTCTAAGATTTTCAGCCACGATGCACATGCTGGGCTCGGGTATGT
1 GCATACAGAGTTCATTCCCAGTCTAAGATTTTCAGCCACGATGCACATGCTGGGCTCGGGCATGT
**
23641180 GCTGGTGCAGCATTTTTTTTGCCCGGGGCACCATCACCGGAG-CGTC-GC-T-GGAGAGCCTAAC
66 GCTGGTGCAGCA-TTTTTTCCCCCGGGGCACCATCACCGGAGACGTCGGCATCGGAGAGCCTAAC
** * *
23641241 CGGTAGCATTGGGGGTTCCGATGATTGGGGG-GCCGGGAGGTGTGCGCAC-ATG-G-G-T-GT-T
130 CGACAGCATTGGGGGTTCCGACGACTGGGGGTGCCGGGAGGTGTGCGCACAATGTGCGATGGTCT
*
23641299 GGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAA
195 GGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
*
23641363 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGAGGACACTTT
* *
23641428 TTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTAAGCTGAATTTTTTTGTGCGTGCCAAA
325 TTTCAAACAGTCAC-AAATCTTCTCCACTTCGAGTTTTAAGCTGAATTTTTTTATGCGTGCCAAA
*
23641493 AAAAATACAAGGATCACCTCTACAAAATTTGGGGACAAAACACTTTCTAAAAAAATTTTCAAAAA
389 AAAAATACAAGGATCACCTCTACAAAATTTGGGGACAAAACACTTTCTAAAAAAATTTTAAAAAA
* **
23641558 TCCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGGGTCATCTTGCCACGAAACT
454 TCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGGGTCATCTTGCCACGAAACT
* *
23641623 TGACATGAAGGCTTCGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
519 TCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
* *
23641688 GAAATATGAAGATGTGCTTGAACCCACCTACCATC-TGTTCGATCCCCAGCTTGCGCATCCTGCC
584 GAAATATGAAGATGTGATTGAACCCACCTACCA-CATGTTCGATCCCCAGCTTACGCATCCTGCC
* * *
23641752 TCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTCGAATGAGGCATACAGAGTTCATCC
648 TCCCTGGTCAGCTGAGCGCCCGCACACTCGTTTCATGGGTCGAATGAGGCATACAGAGTTCATCC
* * * * * * *
23641817 CCAGTCTAAGCATATGAAGTTTATTCCTAGTCTAAGGTCGGACCGGATCGAGGGTTGCAGCTGCA
713 CCAGTCTAAGCATAAGAAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCA
* * * * *
23641882 GGATCGACAACACGCAGGGAGGATCGGGTTGATCCCCGACTTGTGCATTCTGCCTCTCCAGCCGG
778 GGATCGACAACACGCAGGGAGGACCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCAG
* * ** *
23641947 CTGAACGCCCGGATGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAA
843 CTGAACACCCGCACACCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGCCTAA
23642010 GC
1 GC
23642012 CCCAGTCGGA
Statistics
Matches: 809, Mismatches: 81, Indels: 35
0.87 0.09 0.04
Matches are distributed among these distances:
894 86 0.11
895 557 0.69
896 3 0.00
897 2 0.00
899 1 0.00
900 1 0.00
901 1 0.00
902 3 0.00
905 17 0.02
906 36 0.04
910 1 0.00
911 2 0.00
914 4 0.00
916 70 0.09
917 25 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (905 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATTTTCAGCCACGATGCACATGCTGGGCTCGGGCATGT
GCTGGTGCAGCATTTTTTCCCCCGGGGCACCATCACCGGAGACGTCGGCATCGGAGAGCCTAACC
GACAGCATTGGGGGTTCCGACGACTGGGGGTGCCGGGAGGTGTGCGCACAATGTGCGATGGTCTG
GTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGAGGACACTTTT
TTCAAACAGTCACAAATCTTCTCCACTTCGAGTTTTAAGCTGAATTTTTTTATGCGTGCCAAAAA
AAATACAAGGATCACCTCTACAAAATTTGGGGACAAAACACTTTCTAAAAAAATTTTAAAAAATC
CCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGGGTCATCTTGCCACGAAACTTC
ACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
AATATGAAGATGTGATTGAACCCACCTACCACATGTTCGATCCCCAGCTTACGCATCCTGCCTCC
CTGGTCAGCTGAGCGCCCGCACACTCGTTTCATGGGTCGAATGAGGCATACAGAGTTCATCCCCA
GTCTAAGCATAAGAAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGA
TCGACAACACGCAGGGAGGACCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCAGCTG
AACACCCGCACACCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGCCTAA
Found at i:23642116 original size:159 final size:158
Alignment explanation
Indices: 23641860--23642328 Score: 363
Period size: 158 Copynumber: 3.0 Consensus size: 158
23641850 AAGGTCGGAC
* *
23641860 CGGATCGAGGGTTGCAGCTGCAGGATCGACAACACGCAGGGAGGATCGGGTTGATCCCCGACTTG
1 CGGATCGAGGGTTGCAGCAGCAGGACCGACAACACGCAGGGAGGATCGGGTTGATCCCCGACTTG
* * * * * *
23641925 TGCATTCTGCCTCTCCAGCCGGCTGAACGCCCGGATGC-CTGTTTCATGGGTTGGCTTAGGCATA
66 CGCATTATGCCTCTCCAGCCAGCTCAACGCCCGCATGCTC-GTTTCATGGGTTGACTTAGGCATA
*
23641989 GGGAGTTCATTCCATGCCTAAGCCCCAGT
130 CGGAGTTCATTCCATGCCTAAGCCCCAGT
** * * * * *
23642018 CGGATCGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGTTCGGGTTGATCCCC-AGCT
1 CGGATCGAGGGTTGCAGCAGCAGGACCGACAACACGCAG-GGAGGATCGGGTTGATCCCCGA-CT
* * * *
23642082 TGCGCATTATGCCTCTCC-GATCAGCTCAGCGCCCGCATGGTCGTTTCCTGGGTTGACTTAGGCA
64 TGCGCATTATGCCTCTCCAG-CCAGCTCAACGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCA
* * ** *
23642146 TACGGAGTTCTTTCC-TAGTCTAAG-ATCAGA
128 TACGGAGTTCATTCCAT-GCCTAAGCCCCAGT
* * ** * * * * * ** ** *
23642176 CTGGATCGAGGGTTGTAGTAGCAGGATTGACAGCATGTAGGGGGGACCGGGCCGATCTTCTACTT
1 C-GGATCGAGGGTTGCAGCAGCAGGACCGACAACACGCAGGGAGGATCGGGTTGATCCCCGACTT
* * * * * * * * * * * **
23642241 GCGCATTCTACCTCTTCGGCCTGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGAAATA
65 GCGCATTATGCCTCTCCAGCCAGCTCAACGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATA
* *
23642306 CGGAGTTCATTCCACGTCTAAGC
130 CGGAGTTCATTCCATGCCTAAGC
23642329 ATACAGAGTT
Statistics
Matches: 248, Mismatches: 53, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
158 124 0.50
159 123 0.50
160 1 0.00
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
CGGATCGAGGGTTGCAGCAGCAGGACCGACAACACGCAGGGAGGATCGGGTTGATCCCCGACTTG
CGCATTATGCCTCTCCAGCCAGCTCAACGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATAC
GGAGTTCATTCCATGCCTAAGCCCCAGT
Found at i:23642337 original size:26 final size:26
Alignment explanation
Indices: 23642303--23642353 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23642293 TGGCTTAGAA
*
23642303 ATACGGAGTTCATT-CCACGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
23642329 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
23642354 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:23642713 original size:170 final size:170
Alignment explanation
Indices: 23642402--23642713 Score: 428
Period size: 170 Copynumber: 1.8 Consensus size: 170
23642392 GCAGGATCGA
* * * *
23642402 CAGCACGCAGGGGGGACCGAGCCGATCCCTGACTTACACATTTTATCTCTCCAGCCGACTGAGCG
1 CAGCACGCAGGGGGGACCGAGCCGATCCCAGACTTACACATTCTACCTCTCCAGCCGACTAAGCG
* * * * * *
23642467 CCTACATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAACT
66 CCGACACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACC
*
23642532 GGACTGAGGGTTATGGCAGCAGGGCCGGTAACGGGATAGG
131 GGACCGAGGGTTATGGCAGCAGGGCCGGTAACGGGATAGG
* * * * * *
23642572 CAGCACGCAGGGGGGACCGGGCCGATCCCCAG-CTTGCGCATTCTGCCTCTCTAGCCGGCTAAGC
1 CAGCACGCAGGGGGGACCGAGCCGAT-CCCAGACTTACACATTCTACCTCTCCAGCCGACTAAGC
* * *
23642636 GCCGGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
65 GCCGACACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAAC
23642701 CGGACCGAGGGTT
130 CGGACCGAGGGTT
23642714 GTGGTAGCGA
Statistics
Matches: 121, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
170 117 0.97
171 4 0.03
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (170 bp):
CAGCACGCAGGGGGGACCGAGCCGATCCCAGACTTACACATTCTACCTCTCCAGCCGACTAAGCG
CCGACACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACC
GGACCGAGGGTTATGGCAGCAGGGCCGGTAACGGGATAGG
Found at i:23642976 original size:158 final size:158
Alignment explanation
Indices: 23642572--23643012 Score: 451
Period size: 159 Copynumber: 2.8 Consensus size: 158
23642562 ACGGGATAGG
* ** * ** *
23642572 CAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCTAGCCGGCTAAGCG
1 CAGCACGCTGGGGGGAATGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTAAGCG
* * * *
23642637 CCGGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
66 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCC
* * ** * *
23642702 GGACCGAGGGTTGTGGTAGCGAGACCGA
131 AGACCAAGGGTTGCAGCAGCAAGACCGA
* * * * * *
23642730 CAGCAC-ATAGAGGGGG-ATCGGGCTGATCCTCGGCTTGCGCATTATGCCTCTTCGG-TAGGCTC
1 CAGCACGCT-G-GGGGGAAT-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCT-GGCTA
* * * * * * *
23642792 AGCACCCGCACACTTGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-AT
62 AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAC
**
23642855 CAGACCAGACCAAGGGTTGCAGCAGCAAGATTGA
126 CAG-CCAGACCAAGGGTTGCAGCAGCAAGACCGA
* * *
23642889 TAGCACGCTGGGGGGAATGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCTGGCTGAGCG
1 CAGCACGCTGGGGGGAATGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTAAGCG
* * *
23642954 CCCGCACGCTCATTCCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCA
66 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
23643013 TATGAAGTTC
Statistics
Matches: 223, Mismatches: 49, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 99 0.44
159 118 0.53
160 4 0.02
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
CAGCACGCTGGGGGGAATGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTAAGCG
CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCC
AGACCAAGGGTTGCAGCAGCAAGACCGA
Found at i:23643122 original size:11 final size:11
Alignment explanation
Indices: 23643106--23643138 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
23643096 CCCAGGGCAC
23643106 CATCGTCGGAG
1 CATCGTCGGAG
23643117 CATCGTCGGAG
1 CATCGTCGGAG
*
23643128 CATCGCCGGAG
1 CATCGTCGGAG
23643139 AGCCTAACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.30, G:0.36, T:0.15
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:23643747 original size:26 final size:26
Alignment explanation
Indices: 23643717--23643769 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23643707 GTTGACTTAG
23643717 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
* *
23643743 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
23643769 G
1 G
23643770 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:23644616 original size:906 final size:907
Alignment explanation
Indices: 23642826--23644777 Score: 2799
Period size: 906 Copynumber: 2.1 Consensus size: 907
23642816 GTTGACTTAT
* * * * * * *
23642826 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAAGATTGATA
1 GCATAC-GAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGGTA
* *
23642891 GCACGCTGGGGGGAAT-GGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCTGGCTGAGCGC
65 GCACGCAGGGGGG-ATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGC-CGCTGAGCGC
* * * * *
23642955 CCGCACGCTCATTCCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCATATGAAG
128 CCGCACACACATTCCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATAAGAAG
* *
23643020 TTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGTGCTGGTACCA
193 TTCATTCCCAGTCTAAGATTTTCAGCCACGATGCACATGCTGGGCTCGGGCATGTGCTGGTACCA
23643085 CATTTTTTTCACCCAGGGCACCATCGTCGGAGCATCGTCGGAGCATCGCCGGAGAGCCTAACCGA
258 CATTTTTTTCACCCAGGGCACCA-C-T--G-G---CGTCGGAGCATCGCCGGAGAGCCTAACCGA
* * * * * * *
23643150 CGGATTTGGGGTTTCGACGATTGGGGCGGCCAGGGGAGTGTGTGCACATGATGTGCGATGGGTGC
315 CGCATTGGGGGTTCCGACAATTGGGGCGGCCAGGGGAGTGTGCGCACATGATGTACAATGGGTGC
*
23643215 TGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAA
380 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAA
*
23643280 GAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCACTAAAGTGTCTGAAATGGGGACTCTTT
445 GAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCACTAAAGTGTCTGAAATGGGGACACTTT
23643345 TTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTGTTTAGCTGAATTGTTTTATGCATGCAAAA
510 TTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTGTTTAGCTGAATTGTTTTATGCATGCAAAA
* *
23643410 AAAAATACAAGGATCACCTATACCAAATTTGGGGACAAAAATCTTTCTAAAAAAATTTTAAAAAA
575 AAAAATACAAGGATCACCTATACCAAATTTAGGGACAAAAATCTTGCTAAAAAAATTTTAAAAAA
* ** *
23643475 TCCCGAACCGCAAAAAGTTTCAAAAATTGTCAAAAATAGAAAACGGATCGTCTTGCCACGAAACT
640 TCCCGAACCACAAAAAGTTTCAAAAATCATCAAAAATAGAAAACGGATCGTCTTGCCACGAAACG
*
23643540 TAACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
705 TAACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
** *
23643605 GAAATATGAAGATGTGATTGAACCCACCTACCACATGTTCGATCCCCGACTTGTACATCCTGCCT
770 GAAATATGAAGATGTGATTGAACCCACCTACCACACATTCGATCCCCGACTTGCACATCCTGCCT
* *
23643670 CTCTGGTCAGCTGAGCGCCCGTACACTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCC
835 CTCTGGTCAGCTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCC
23643735 CAGTCTAA
900 CAGTCTAA
* ** *
23643743 GCATACAGAGTTCATTCCTAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
1 GCATAC-GAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGGTA
* *
23643808 GCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCC
65 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCC-GCTGAGCGCC
* * * *
23643873 CGCACACACGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCATACAG-AG
129 CGCACACACATTCCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATA-AGAAG
* * *
23643937 TTCATTCCCAGTCTAAGATTTTCAGCCACGATGCACATGCTGGGCTCGGGTATGTGCTGGTGCCG
193 TTCATTCCCAGTCTAAGATTTTCAGCCACGATGCACATGCTGGGCTCGGGCATGTGCTGGTACCA
*
23644002 CATTTTTTTCGCCC-GAGGCACCA-T-G-GTCGGAGCATCGCCGGAGAGCCTAACCGACAGCATT
258 CATTTTTTTCACCCAG-GGCACCACTGGCGTCGGAGCATCGCCGGAGAGCCTAACCGAC-GCATT
* **
23644063 GGGGGTTCCGGCAATTGGGG-GGGTAGGGG-GTGTGCGCACATGATGTACAATGGGTGCTGGTAC
321 GGGGGTTCCGACAATTGGGGCGGCCAGGGGAGTGTGCGCACATGATGTACAATGGGTGCTGGTAC
** *
23644126 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATACCCCCTTAAAGAGCA
386 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGCA
* * *
23644191 TTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCA
450 TTTGAGATTTTATAGGTTTGCTGCCAATAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * * *
23644256 AACGGTCACAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
515 AACGGTCACAAAATCTTCTCCACTTCGAGTGTTTAGCTGAATTGTTTTATGCATGCAAAAAAAAA
* * * *
23644321 TACAAGGATTACCTCTACCAAATTTAGGGACAAAACTCTTGCTAAAAAATTTTTAAAAAATCCCG
580 TACAAGGATCACCTATACCAAATTTAGGGACAAAAATCTTGCTAAAAAAATTTTAAAAAATCCCG
** * * *
23644386 AACCACAAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGG-TCGTCTTGCCACGAAACGTCAC
645 AACCAC-AAAAAGTTTCAAAAATCATCAAAAATAGAAAACGGATCGTCTTGCCACGAAACGTAAC
* *
23644450 ATGAAGGCTTAAGGGACCATTGTATGAATTTACATGTCATAAAAATGGCATTGGCATGGCAGAAA
709 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAA
* * * *
23644515 TATGAAGATGTGCTTGAACCCACCTACCACCCATTCGATCCCCGGCTTGCGCATCCTGCCTCTCT
774 TATGAAGATGTGATTGAACCCACCTACCACACATTCGATCCCCGACTTGCACATCCTGCCTCTCT
* * * *
23644580 GGTC-GACTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCTAG
839 GGTCAG-CTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAG
23644644 TCTAA
903 TCTAA
** * *
23644649 GCATACGAAGTTCATTCCTAGTCTAAGATCGGATAGGACTGAGGGTTGCAACAGCAGGATCGGTA
1 GCATACG-AGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGGTA
* * * * * *
23644714 GCACGCAGGAGGGACCGGGCCGATCCCTGGCTTGTGCATTCTACTTCTCCGACCGACTGAGCGC
65 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCG-CTGAGCGC
23644778 TTGCACGGTA
Statistics
Matches: 924, Mismatches: 101, Indels: 31
0.88 0.10 0.03
Matches are distributed among these distances:
905 80 0.09
906 546 0.59
907 49 0.05
910 1 0.00
914 1 0.00
916 3 0.00
917 243 0.26
918 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (907 bp):
GCATACGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGGTAG
CACGCAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGCTGAGCGCCCG
CACACACATTCCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATAAGAAGTTC
ATTCCCAGTCTAAGATTTTCAGCCACGATGCACATGCTGGGCTCGGGCATGTGCTGGTACCACAT
TTTTTTCACCCAGGGCACCACTGGCGTCGGAGCATCGCCGGAGAGCCTAACCGACGCATTGGGGG
TTCCGACAATTGGGGCGGCCAGGGGAGTGTGCGCACATGATGTACAATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCATTTGAG
ATTTTATAGGTTTGCTGCCAATAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGT
CACAAAATCTTCTCCACTTCGAGTGTTTAGCTGAATTGTTTTATGCATGCAAAAAAAAATACAAG
GATCACCTATACCAAATTTAGGGACAAAAATCTTGCTAAAAAAATTTTAAAAAATCCCGAACCAC
AAAAAGTTTCAAAAATCATCAAAAATAGAAAACGGATCGTCTTGCCACGAAACGTAACATGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAG
ATGTGATTGAACCCACCTACCACACATTCGATCCCCGACTTGCACATCCTGCCTCTCTGGTCAGC
TGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAA
Found at i:23644659 original size:26 final size:26
Alignment explanation
Indices: 23644623--23644675 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23644613 GTTGACTTAG
23644623 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
*
23644649 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
23644675 G
1 G
23644676 ATCGGATAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:23651039 original size:150 final size:150
Alignment explanation
Indices: 23650762--23651041 Score: 348
Period size: 150 Copynumber: 1.9 Consensus size: 150
23650752 TGTGGCAGTG
* * *
23650762 GGATCGACAGCACACAGAGCGGGATCAGGCTGATCCTAGGCTTGCGCATTATGCCTCTCCGACCG
1 GGATCGACAGCACACAGAGAGGGATCAGGCCGATCCTAGGCTTGCGCATTATACCTCTCCGACCG
* * * *
23650827 ACTCAGCGCTCGCACGCTTATTTCGTGGGTTGACTTAGGCTTACGAAGTTCATTCCCAGTCTAAG
66 ACTAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
23650892 ATCGGACGGTTACAGTAGCA
131 ATCGGACGGTTACAGTAGCA
* * * * * **
23650912 GGATCGATAGCACGCAGGGAGGGATCAGGCCGATCCCT-GGCTTGCGCATTCTACCTTTCCGGTC
1 GGATCGACAGCACACAGAGAGGGATCAGGCCGAT-CCTAGGCTTGCGCATTATACCTCTCCGACC
* * * * **
23650976 GGCTAAGCGCCCGCGCGCTCGTTTCGTGGGTTGGCTTAGGCATACGGCGTTCATT-CCATGTCTA
65 GACTAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTA
23651040 AG
129 AG
23651042 GATACAAAGT
Statistics
Matches: 108, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
149 3 0.03
150 102 0.94
151 3 0.03
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (150 bp):
GGATCGACAGCACACAGAGAGGGATCAGGCCGATCCTAGGCTTGCGCATTATACCTCTCCGACCG
ACTAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
ATCGGACGGTTACAGTAGCA
Found at i:23651337 original size:171 final size:171
Alignment explanation
Indices: 23651075--23651394 Score: 392
Period size: 171 Copynumber: 1.9 Consensus size: 171
23651065 AAGATCGGAC
* * * * *
23651075 TGGACCGAGGGTTGCGGCAGTAGGACCAGCAGCAGGATCGGCAGCACGTAGGGGGGGACCGGGCC
1 TGGACCGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCGAGCC
* * ** *
23651140 GATCCCTGGCCTACACATTCTGCCTC-TCTGACCGGCTGAGCACTTGCACACTCGTTTCGTGGGT
66 GATCCCTGACCTACACATTATGCCTCTTC-GACCGGCTGAGCACCCGCACACTCATTTCGTGGGT
* *
23651204 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCGGT
130 TGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCGGT
* ** *
23651246 TGGACCGAGGGTTGTGGCAGCAGGACC-GACAGTGGGATCGACAGCACGCAGAGGGGGATCGAGC
1 TGGACCGAGGGTTGCGGCAGCAGGACCAG-CAGCAGGATCGACAGCACGCAGAGGGGGACCGAGC
* ** *** * *
23651310 TGATCCCTGATTTGTGCATTATGCCTCTTCGACCGGTTGAGCGCCCGCACACTCATTTCGTGGGT
65 CGATCCCTGACCTACACATTATGCCTCTTCGACCGGCTGAGCACCCGCACACTCATTTCGTGGGT
23651375 TGACTTAGGCATACGAAGTT
130 TGACTTAGGCATACGAAGTT
23651395 TATCCCCAAT
Statistics
Matches: 123, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
170 1 0.01
171 120 0.98
172 2 0.02
ACGTcount: A:0.19, C:0.27, G:0.33, T:0.22
Consensus pattern (171 bp):
TGGACCGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCGAGCC
GATCCCTGACCTACACATTATGCCTCTTCGACCGGCTGAGCACCCGCACACTCATTTCGTGGGTT
GACTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCGGT
Found at i:23651420 original size:26 final size:26
Alignment explanation
Indices: 23651383--23651434 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
23651373 GTTGACTTAG
*
23651383 GCATACGAAGTTTATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
23651409 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
23651435 AATTAGACCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:23651883 original size:159 final size:157
Alignment explanation
Indices: 23651459--23652058 Score: 555
Period size: 158 Copynumber: 3.8 Consensus size: 157
23651449 GAGGGTTGCG
* *** ** * *
23651459 GCAGCACGCAGGAGGGA-CTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCG-GCTGGCTGA
1 GCAGCACGCAGGGGGGATC-GGGCCGATCCTTGGCTTGCGCATTCTGCCTCTTTGATC-GGTTGA
* * * * * *
23651522 GCACCCTGCATGCCCGTTTCATGGGTTGGCTTAGTCATAGGGAGTTAATTCCATGTCTAAGCCCC
64 GC-CCC-GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCT
* * *
23651587 AGCCGGGCCAAGGGTTGTGGCAGCGGGAT-A
127 AGCCGGACCGAGGGTTGTGGCAGCAGGATCA
* * * * * * * *
23651617 GGTAGCACGCCGGGGGTATCGGGCCGATCCTCGGTTTGCTCATTCTGCCTCTTCGACCGGTTGAG
1 -GCAGCACGCAGGGGGGATCGGGCCGATCCTTGGCTTGCGCATTCTGCCTCTTTGATCGGTTGAG
* * ** * *
23651682 ACCCCGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCTAG
65 -CCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAG
*
23651747 CTGGACCGAGGGTTGTGGCAGCAGGATCA
129 CCGGACCGAGGGTTGTGGCAGCAGGATCA
* * * * * *
23651776 GCAGCATGCAGAGGGGGACCGAGCCGATCCTTGGCTTGCGCATTATGCCTCTTTGATCGGCTCAG
1 GCAGCACGCAG-GGGGGATCGGGCCGATCCTTGGCTTGCGCATTCTGCCTCTTTGATCGGTTGAG
* * * **
23651841 CGCCCGCACGCTTGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATTA
65 C-CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCTA
* **
23651904 GACCAGACCGAGGGTTGCAGCAGCAGGATC-
128 G-CCGGACCGAGGGTTGTGGCAGCAGGATCA
* * * * *
23651934 GACAACACGTAGGGGGGATCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCTGATCGGTTGAG
1 G-CAGCACGCAGGGGGGATCGGGCCGATCCTTGGCTTGCGCATTCTGCCTCTTTGATCGGTTGAG
* * * *
23651999 CACCCACACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGC
65 C-CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
23652059 ATACGGAGTT
Statistics
Matches: 360, Mismatches: 70, Indels: 22
0.80 0.15 0.05
Matches are distributed among these distances:
157 3 0.01
158 181 0.50
159 170 0.47
160 6 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (157 bp):
GCAGCACGCAGGGGGGATCGGGCCGATCCTTGGCTTGCGCATTCTGCCTCTTTGATCGGTTGAGC
CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCC
GGACCGAGGGTTGTGGCAGCAGGATCA
Found at i:23652067 original size:26 final size:26
Alignment explanation
Indices: 23652031--23652083 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23652021 GTTGGCTTAG
23652031 GCATACGGAGTTCATT-CCACGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23652057 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23652083 G
1 G
23652084 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23652803 original size:26 final size:26
Alignment explanation
Indices: 23652753--23652805 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23652743 GTTGACTTAG
*
23652753 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAATCTAA
23652779 GCATACGAAGTTCATTCCC-AATCTAA
1 GCATACGAAGTTCA-TCCCTAATCTAA
23652805 G
1 G
23652806 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAATCTAA
Found at i:23653280 original size:158 final size:157
Alignment explanation
Indices: 23652779--23653271 Score: 549
Period size: 158 Copynumber: 3.1 Consensus size: 157
23652769 CCTAGTCTAA
* * ** *
23652779 GCATACGAAGTTCATTCCCAATCTAAGATCGGACAGGACCGAGGGTTGCAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGATCGATA
* ** * * *
23652844 GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCAGTCGACTGAGCGCC
66 GCACGCAGGGGGGACCGGGCCAATCCC-GGCTTACGCATTCTGCCTCTCCGGTCGGCTAAGCGCC
* * * *
23652909 TGCACGCCCATTTCGTGGGTTGCCTTAG
130 CGCATGCTCATTTCGTGGGTTGACTTAG
* * ** * * **
23652937 GCATAGGGAGTTCATT-CCATGTCTAAGA-CCTAGCCGGATCGGGGGTTGTGGCAGCGGGATCGA
1 GCATACGGAGTTCATTCCCA-ATCTAAGATCGGA-CCGGACCGAGGGTTGTGGCAGTAGGATCGA
* * * * * * * * *
23653000 TAGCACGCAGAGAGGGATCGGGCCGAACCCCGGCTTACACATTATGCCTATCTGGCCGGCTCAGC
64 TAGCACGCAG-GGGGGACCGGGCC-AATCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTAAGC
23653065 GCCCGCATGCTCATTTCGTGGGTTGACTTAG
127 GCCCGCATGCTCATTTCGTGGGTTGACTTAG
23653096 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGATCGATA
* * * * *
23653161 GCACGTAGGGGGGACCGGGCCAATCCTCGGCTTACGCGTTCTACCTCTCCGGTTGGTTAAGCGCC
66 GCACGCAGGGGGGACCGGGCCAATCC-CGGCTTACGCATTCTGCCTCTCCGGTCGGCTAAGCGCC
* ** *
23653226 CGCATGCTCGTTTTATGGGTTGGCTTAG
130 CGCATGCTCATTTCGTGGGTTGACTTAG
23653254 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
23653272 ATGTCTAAGC
Statistics
Matches: 271, Mismatches: 57, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
157 9 0.03
158 134 0.49
159 119 0.44
160 9 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGATCGATA
GCACGCAGGGGGGACCGGGCCAATCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTAAGCGCCC
GCATGCTCATTTCGTGGGTTGACTTAG
Found at i:23653283 original size:26 final size:26
Alignment explanation
Indices: 23653254--23653306 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23653244 GTTGGCTTAG
23653254 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
23653280 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23653306 G
1 G
23653307 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23653963 original size:159 final size:158
Alignment explanation
Indices: 23653730--23654150 Score: 420
Period size: 159 Copynumber: 2.7 Consensus size: 158
23653720 GGGGGATCAG
* * * * * * * * * *
23653730 GCCGATCCCCGGGTTGCGCATTCTGCCTCTC-CGATCGGCTGAGCACCCACACACTCATTTCGTT
1 GCCGATCCCCAGCTTGCGCATTATGCCTCTCTAG-CCGGCTCAGCACCCGCACGCTCGTTTCGTG
* * * *
23653794 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTATGGTA
65 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCAAGGGTTACGATA
*
23653858 GCAGGACCGACAGCA-CATAAAGGGGGATCGA
130 GCAGGACCGACAGCAGCA-AAA--GGGACCGA
* * * * * *
23653889 GCTGATCCCCAGCTTGTGCATTATGCCTCTCTAGTCGGCTCAGCGCCCGTACGCTTGTTTCGTGG
1 GCCGATCCCCAGCTTGCGCATTATGCCTCTCTAGCCGGCTCAGCACCCGCACGCTCGTTTCGTGG
* * * * *
23653954 GTTGACTTAGGCATACGAAGTTCATTCC-TAGTCTAAG-ATCAGACCGGATCAAGGGTTGCGATA
66 GTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCGGACCAAGGGTTACGATA
** * *
23654017 GCAGGATTGACAGCATGCAGAAGGGACCGG
130 GCAGGACCGACAGCA-GCAAAAGGGACCGA
* * * * * *
23654047 GCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTGG
1 GCCGATCCCCAGCTTGCGCATTATGCCTCTCTAGCCGGCTCAGCACCCGCACGCTCGTTTCGTGG
*
23654112 GTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
66 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
23654151 TACGAAGTTC
Statistics
Matches: 212, Mismatches: 43, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
158 95 0.45
159 112 0.53
160 3 0.01
161 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.24
Consensus pattern (158 bp):
GCCGATCCCCAGCTTGCGCATTATGCCTCTCTAGCCGGCTCAGCACCCGCACGCTCGTTTCGTGG
GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCAAGGGTTACGATAG
CAGGACCGACAGCAGCAAAAGGGACCGA
Found at i:23654134 original size:158 final size:157
Alignment explanation
Indices: 23653647--23654148 Score: 510
Period size: 158 Copynumber: 3.2 Consensus size: 157
23653637 CCCAGTCTAA
* * * *
23653647 GCATACGGAGTTCATTCCGA-ATCTAAGATC-GAACAGGACCGAGGGTTGCGGCAACAGGATCGA
1 GCATACGGAGTTCATTCC-ATGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGTAGCAGGATCGA
* ** * * * *
23653710 CAGCACGGAGGGGGGATCAGGCCGATCCCCGGGTTGCGCATTCTGCCTCTCCGATCGGCTGAGCA
64 CAGCA-GCAGAAGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCA
* * * *
23653775 CCCACACACTCATTTCGTTGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** ** *
23653805 GCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTATGGTAGCAGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * * * *
23653869 AGCA-CATAAAGGGGGATCGAGCTGATCCCCAGCTTGTGCATTATGCCTCTCTAGTCGGCTCAGC
65 AGCAGCA-GAA--GGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGC
* * * *
23653933 GCCCGTACGCTTGTTTCGTGGGTTGACTTAG
127 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
23653964 GCATACGAAGTTCATTCC-TAGTCTAAGATCAGACCGGATCAAGGGTTGCGATAGCAGGATTGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * *
23654028 AGCATGCAGAAGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCAC
65 AGCA-GCAGAAGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCAC
23654093 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
23654122 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
23654149 CATACGAAGT
Statistics
Matches: 273, Mismatches: 60, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 1 0.00
158 148 0.54
159 118 0.43
160 3 0.01
161 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
GCAGCAGAAGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCACCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:23654159 original size:26 final size:26
Alignment explanation
Indices: 23654122--23654174 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
23654112 GTTGGCTTAG
23654122 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
23654148 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
23654174 G
1 G
23654175 ATTAGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:23654699 original size:869 final size:865
Alignment explanation
Indices: 23652713--23655019 Score: 2888
Period size: 868 Copynumber: 2.7 Consensus size: 865
23652703 CCTCTCTGGT
* *
23652713 CGGTTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCTAGTCTA
1 CGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTA
*
23652778 AGCATACGAAGTTCATTCCCAATCTAAGATCG-GACAGGACCGAGGGTTGC-AGCAGTAGGATCG
66 AGCATACGAAGTTCATTCCCAATCTAAGATCGAGACAGGACCGAGGGTTGCGA-CAATAGGATCG
* *
23652841 ACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCAGTCGACTGAGC
130 ACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT-CAGTCG-CTGAGC
* * * * *
23652906 GCCTGCACGCCCATTTCGTGGGTTGCCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCTAGC
193 GCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * * * *
23652971 CGGATCGGGGGTTGTGGCAGCGGGATCGATAGCACGCAGAGAGGGATCGGGCCGAACCCCGGCTT
258 CGGACCGAGGGTTGTGGCAGC-GGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTT
** * * * * *
23653036 ACACATTATGCCTATCTGGCCGGCTCAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATA
322 -GTCATTATGCCTCTCTGGTCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * * * *
23653101 CGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGATCGATAGCACG
386 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGATCGATAGCATG
* * * * * * * *
23653166 TAGGGGGGACCGGGCCAATCCTCGGCTTACGCGTTCTACCTCTCCGGTTGGTTAAGCGCCCGCAT
451 CAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGCTGGTTGAGCGCCCGCAT
* * *
23653231 GCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATT
516 GCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATT
* * * *
23653296 CCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGACAGCAGGACCAGTAGCAGGATCGACAGCAT
581 CCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGACAGCAAGACCAGCAGCAGGATCGACAGCAC
* *
23653361 GCAAGGAGGGATCAGGCCGATCCCGACTTACGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCA
646 GCAAGGAGGGACCAGGCCGATCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCA
* * *
23653426 CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCGAGCCAGACCG
711 CGCTCGTTTCATGGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAGCCCCACCCAGACCG
* ** * ** * * *
23653491 AAGGTTGTGGCAGCAGGACCGGCAGCGGGATCAATGGCACGCAGAGAGGGATCGGGTTGATCCTC
776 AAGGTTGTGGCAGCAGAACCGGCAAAGAGATCAACAGCACGCAGAGAGGGACCGGGCTGATCCCC
* *
23653556 GACTTACGTATTATGCCTCTCCGGC
841 GACTTACGCATTATGCCTCTCCGAC
* * * * * * * *
23653581 CGATTGAGCGCCAGCACGCTTGTTTCGTGGGTTGACTTAGGTAGACGGAGGTGATCCCCAGTCTA
1 CGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTA
* * * *
23653646 AGCATACGGAGTTCATTCCGAATCTAAGATCGA-ACAGGACCGAGGGTTGCGGCAACAGGATCGA
66 AGCATACGAAGTTCATTCCCAATCTAAGATCGAGACAGGACCGAGGGTTGCGACAATAGGATCGA
* * * * * *
23653710 CAGCACGGAGGGGGGATCAGGCCGATCCCCGGGTTGCGCATTCTGCCTCTCCGATCGGCTGAGCA
131 CAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCAG-TC-GCTGAGCG
* * * * *
23653775 CCCACACACTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
194 CCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * ** * * *
23653840 GGACCGAGGGTTATGGTAGCAGGACCGACAGCACATAAAGGGGGATCGAGCTGATCCCCAGCTTG
259 GGACCGAGGGTTGTGGCAGC-GGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTG
* *
23653905 TGCATTATGCCTCTCTAGTCGGCTCAGCGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATAC
323 T-CATTATGCCTCTCTGGTCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * * *
23653970 GAAGTTCATTCCTAGTCTAAGATCAGACCGGATCAAGGGTTGCGATAGCAGGATTGACAGCATGC
387 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGATCGATAGCATGC
** * * *
23654035 AGAAGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCACCCGCACG
452 AGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGCTGGTTGAGCGCCCGCATG
* *
23654100 CTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTC
517 CTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTC
* * * *
23654165 CCAGTCTAAGATTAGATCGGACTGAA-GGTTGTGGCAGCAAGACCAGCAGCAGGATCGACAGCAC
582 CCAGTCTAAGATCAGATCGGAC-CAAGGGTTGCGACAGCAAGACCAGCAGCAGGATCGACAGCAC
* * * ** * * *
23654229 GC-AGGAGGGGACCGGGCCGATTCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGTG-TCG
646 GCAAGGA-GGGACCAGGCCGA-TCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCG
*
23654292 ACACGCTCGTTTCATGGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCTAATCCCCACCCAGA
709 -CACGCTCGTTTCATGGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAGCCCCACCCAGA
* * ** * * **
23654357 CCGAGGGTTGTGGTAGCAGAACCGGCAAAGAGATCGGCAGCACGGAGAGGGGGACCTTGCTGATC
773 CCGAAGGTTGTGGCAGCAGAACCGGCAAAGAGATCAACAGCACGCAGAGAGGGACCGGGCTGATC
* *
23654422 CCCGACTTGCGCATTATGCCTCTTCGAC
838 CCCGACTTACGCATTATGCCTCTCCGAC
* * * * *
23654450 CGGTTGAGCACCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAATCTA
1 CGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTA
* * * *
23654515 AGCATACGAAGTTCATTCCCAGTCTAAGATCGAGCCA-GACCGAGGGTTGCGACAATAAGATCGG
66 AGCATACGAAGTTCATTCCCAATCTAAGATCGAGACAGGACCGAGGGTTGCGACAATAGGATCGA
* * * * * * *
23654579 TAACATGTAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCTAGCCAGCTGAGCG
131 CAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTC-AGTC-GCTGAGCG
* * *
23654644 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAAGAGTTCATTCCATGTCTAAGCCCCAGCC
194 CCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * **
23654709 GGACCGAGGGTTGTGGCAGCGAGACCGGCAGCATGCAGAGGGGAATCGGGCCGATCCTTAGCTTG
259 GGACCGAGGGTTGTGGCAGCG-GACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTG
* * *
23654774 CTCATTATGCCTCT-TCGGTTGGCTCAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTATGCATA
323 -TCATTATGCCTCTCT-GGTCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATA
*
23654838 CGGAGTTCATTCCCAGTCTAAGAT-TGAACCGGACCAAGGGTTGC-AGCAGCAGGATCGATAGCA
386 CGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCAAGGGTTGCGA-CAGCAGGATCGATAGCA
* * * *
23654901 TGCAAGGGGGGACCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCTGGCTGGTTGAGCGCCCG
449 TGC-AGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGCTGGTTGAGCGCCCG
*
23654966 CATGCTCGTTTTGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
513 CATGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
23655020 CCTAGCCAGA
Statistics
Matches: 1214, Mismatches: 208, Indels: 32
0.83 0.14 0.02
Matches are distributed among these distances:
867 6 0.00
868 561 0.46
869 540 0.44
870 107 0.09
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (865 bp):
CGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTA
AGCATACGAAGTTCATTCCCAATCTAAGATCGAGACAGGACCGAGGGTTGCGACAATAGGATCGA
CAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCAGTCGCTGAGCGCC
CGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
ACCGAGGGTTGTGGCAGCGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTGTCA
TTATGCCTCTCTGGTCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGATCGATAGCATGCAGGG
GGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGCTGGTTGAGCGCCCGCATGCTCG
TTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAG
TCTAAGATCAGATCGGACCAAGGGTTGCGACAGCAAGACCAGCAGCAGGATCGACAGCACGCAAG
GAGGGACCAGGCCGATCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTC
GTTTCATGGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAGCCCCACCCAGACCGAAGGT
TGTGGCAGCAGAACCGGCAAAGAGATCAACAGCACGCAGAGAGGGACCGGGCTGATCCCCGACTT
ACGCATTATGCCTCTCCGAC
Found at i:23654837 original size:159 final size:159
Alignment explanation
Indices: 23654587--23655051 Score: 429
Period size: 159 Copynumber: 2.9 Consensus size: 159
23654577 GGTAACATGT
* * * ** * * * ** *
23654587 AGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCTAGCCAGCTGAGCGCCCGCACG
1 AGGGGGAACCGGGCCGATCCCAGACTTGTGCATTATGCCTCTCTGGCTGGCTCAGCGCCCGCACG
* * *
23654652 CCCGTTTCATGGGTTGGCTTAGGCATAAAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAG
66 CTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAG
*
23654717 GGTTGTGGCAGC-GAGACCGGCAGCATGC-
131 GGTTGTGGCAGCAG-GACCGACAGCATGCA
* * * *
23654745 AGAGGGGAATCGGGCCGATCCTTAG-CTTGCT-CATTATGCCTCT-TCGGTTGGCTCAGTGCCCG
1 AG-GGGGAACCGGGCCGATCC-CAGACTTG-TGCATTATGCCTCTCT-GGCTGGCTCAGCGCCCG
* * * * **** *
23654807 TACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATTGAACCGGA
62 CACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATT-CCATGTCTAAGCCCCAGCCGGA
* ** * *
23654871 CCAAGGGTTGCAGCAGCAGGATCGATAGCATGCA
126 CCGAGGGTTGTGGCAGCAGGACCGACAGCATGCA
* * * * * * *
23654905 AGGGGGGACCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCTGGCTGGTTGAGCGCCCGCATG
1 AGGGGGAACCGGGCCGATCCCAGACTTGTGCATTATGCCTCTCTGGCTGGCTCAGCGCCCGCACG
* * * * *
23654970 CTCGTTTTGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAG
66 CTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAG
23655035 GGTTGTGGCAGCAGGAC
131 GGTTGTGGCAGCAGGAC
23655052 AAGCGATGGG
Statistics
Matches: 237, Mismatches: 59, Indels: 21
0.75 0.19 0.07
Matches are distributed among these distances:
158 8 0.03
159 221 0.93
160 8 0.03
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
AGGGGGAACCGGGCCGATCCCAGACTTGTGCATTATGCCTCTCTGGCTGGCTCAGCGCCCGCACG
CTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAG
GGTTGTGGCAGCAGGACCGACAGCATGCA
Found at i:23655205 original size:26 final size:26
Alignment explanation
Indices: 23655176--23655228 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23655166 GTTGACTTCG
*
23655176 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
*
23655202 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
23655228 G
1 G
23655229 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTGCATCCCCAGTCTAA
Found at i:23655471 original size:685 final size:672
Alignment explanation
Indices: 23654208--23656382 Score: 1782
Period size: 685 Copynumber: 3.2 Consensus size: 672
23654198 GCAGCAAGAC
* *
23654208 CAGCAGCAGGATCGACAGCACGCAGGAGGGGACCGGGCCGATTCCTGGCTTGTGCATTCTGCCTC
1 CAGCAGCAGGATCGACAGCACGCAGG-GGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTC
* *
23654273 TCCGGTCGGCTGAGTGTCGACACGCTCGTTTCATGGGTTGGCTCAGGCATACGGAGTTCATTCCA
65 TCCGGTCGGCTGAGCGCCGACACGCTCGTTTCATGGGTTGGCTCAGGCATACGGAGTTCATTCCA
* * ** * *
23654338 TGTCTAATCCCCACCCAGACCGAGGGTTGTGGTAGCAGAACCGGCAAAGAGATCGGCAGCACGGA
130 TGTCTAAGCCCCACCCAGACCGAGGGTTGTGGCAGCAGAACAAGCAAAGAGATCGACAGCACGCA
* * * *
23654403 GAGGGGGACCTTGCTGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGTTGAGCACCCGCATG
195 AAGGGGGACCTAGCTGATCCCCGACTTACGCATTATGCCTCTCCGACCGGTTGAGCACCCGCATG
* *
23654468 CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAATCTAAGCATACGAAGTTCATTC
260 CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGAAGTGCATTC
* * * * *
23654533 CCAGTCTAAGATCGAGCCAGACCGAGGGTTGCGACAATAAGATCGGTAACATGTAGGGGGGACCG
325 CCAGTCTAAGATCGAGCCAGACCAAGGGTTGCGACAACAAGATCAGTAACACGTAAGGGGGACCG
* *
23654598 GGCCGATCCCCGGCTTACGCATTCTACCTCTCTAGCCAGCTGAGCGCCCGCACGCCCGTTTCATG
390 GGCCGATCCCCGGCTTACGCATTCTACATCTCTAGCCAGCTGAGCCCCCGCACGCCCGTTTCATG
* * *
23654663 GGTTGGCTTAGGCATAAAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAG
455 GGTTCGCTTAGGCATAAAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAAGGTTGTGGCAG
* ** * * *
23654728 CGAGACCGGCAGCATGCAGAGGGGAATCGGGCCGATCCTTAGCTTGCTCATTATGCCTCTTCGGT
520 CGAGACCGGCAACATGCAGAGGGGAATCGGGCCGATCCCCAGCTTGCTCATTATGCCTCTCCAGC
** * * *
23654793 TGGCTCAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTA
585 TGGCTCAGTGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTA
*
23654858 AGAT-TGAACCGGACCAAGGGTTG
650 AGATCAG-ACCGGACCAAGGGTTG
* * * *
23654881 CAGCAGCAGGATCGATAGCATGCAAGGGGGGACCGGGTCGATCCCCGACTTGTGCATTCTGCCTC
1 CAGCAGCAGGATCGACAGCACGC-AGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTC
* * * ** * *
23654946 TCTGG-CTGGTTGAGCGCCCG-CATGCTCGTTTTGTGGGTTGGCTTAGGCATATGGAGTTCATTC
65 TCCGGTC-GGCTGAGCG-CCGACACGCTCGTTTCATGGGTTGGCTCAGGCATACGGAGTTCATTC
* * * * * * *
23655009 CATGTCTAAGCCCTAGCCAGATCGAGGGTTGTGGCAGCAGGACAAGCGATGGGATCGACAGCACG
128 CATGTCTAAGCCCCACCCAGACCGAGGGTTGTGGCAGCAGAACAAGCAAAGAGATCGACAGCACG
* * **
23655074 CAAAGGGGGATC-AGCCTGATCCCCGGCTTACGCATTATGCCTCTCCGGTCGGCCTCTCCGACAG
193 CAAAGGGGGACCTAG-CTGATCCCCGACTTACGCATTATGCCTCTCCGACCGG--T-T--G--A-
* * * * *
23655138 GCTGAGCGCTTGCATGCTCGTTTCGTGGGTTGACTTCGGCATACGGAGTTCATCCCCAGTCTAAG
249 GC--A-C-C-CGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAG
* * * *
23655203 CATACGGAGTGCATTCCCAGTCTAAGATC-AGACCGGACCAAGGGTTGCGACAGCAGGATCAGTA
309 CATACGAAGTGCATTCCCAGTCTAAGATCGAG-CCAGACCAAGGGTTGCGACAACAAGATCAGTA
* * * *
23655267 ACACGTAAGGGGGACCGGGCC-ATCCCTGGCTTACGCATTCTGCATCTTTGGCC-GACTGAGCCC
373 ACACGTAAGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTACATCTCTAGCCAG-CTGAGCCC
**
23655330 CCGCACGCCCGTTTCATGGGTTCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
437 CCGCACGCCCGTTTCATGGGTTCGCTTAGGCATAAAGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * * * *
23655395 GACCAAAGGTTGTGGCAGTGGGATCGGCAACATGTAGAGGGGGA-CTGGGCTGATCCCCAGCTTG
502 GACCAAAGGTTGTGGCAGCGAGACCGGCAACATGCAGAGGGGAATC-GGGCCGATCCCCAGCTTG
* *
23655459 -TGCATTATGCCTCTCCAGCTGGCTCAGTGCCCACATGCTCATTTTGTGGGTTGACTTAGGCATA
566 CT-CATTATGCCTCTCCAGCTGGCTCAGTGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATA
*
23655523 CGAAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTG
630 CGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTG
* * * * * **
23655566 CGGTAGCAGGATCGACAGCACGCA-GGGGGATCGAGCCGATCCTCGGCTTACGCATTCTGCCTCT
1 CAGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCT
* *
23655630 CCAGTCGACTGATCCCCGGCTTGCGCTTTCTACCTCTTCGGCCAGTTGAGCACCCATACGCTCGT
66 -C---CG---G-T---CGGC-T--G------A-----GC-GCC----GA-CACGC-T-CG-T--T
**** * * * *
23655695 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTA
95 TCATG-GGTTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAGCCCCACCCAGACCGAGGGTTG
* * ** * ** * * * * * ** * **
23655760 TGGTAGCAGGACCGGTAGCGGGATTGGCAACACACAAAGGGGGACCGGGCTGATCCCCGGCTTGT
159 TGGCAGCAGAACAAGCAAAGAGATCGACAGCACGCAAAGGGGGACCTAGCTGATCCCCGACTTAC
* * * * *
23655825 GCATTATGCATCTCCGACTGGCTGAGCACCCGCACGCTCGTTT--TGAGGTTGACTTAGGCATAC
224 GCATTATGCCTCTCCGACCGGTTGAGCACCCGCATGCTCATTTCATG-GGTTGACTTAGGCATAC
* * * * * * * **
23655888 AGAGTTCATCCCCAGTCTAAG-AT-C--A--G-A-T--CGGACTGAGGGTTGAGGTAG--C-A-G
288 GGAGTTCATCCCCAATCTAAGCATACGAAGTGCATTCCCAGTCT-AAGATCGAGCCAGACCAAGG
* * * ** * *
23655939 GAT-CGACAGC---A-C-G---CA-G---GAGGGACTTGGCCGATCCCCGGCTTGCGCATTCTGC
352 GTTGCGACAACAAGATCAGTAACACGTAAGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTAC
* * * * * **
23655991 CTCTC-CGACC-GCATGAGCACCCGCACGCCTGTTTCGTGGGTT-GTCTTAGGCATAGGGAGTTC
417 ATCTCTAG-CCAGC-TGAGCCCCCGCACGCCCGTTTCATGGGTTCG-CTTAGGCATAAAGAGTTC
* * * * *
23656053 ATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGAGACCGGCAGCACGTAGAGAGG
479 ATTCCATGTCTAAGCCCCAGCCGGACCAAAGGTTGTGGCAGCGAGACCGGCAACATGCAGAG-GG
* * * * * *** * *
23656118 G-ATCGAGCC-ATCCCCGGCTTGCGCATTATGCCTCTTCGGCCT-GCTCAACACCCGCACGCTCG
543 GAATCGGGCCGATCCCCAGCTTGCTCATTATGCCTCTCCAG-CTGGCTCAGTGCCCACACGCTCA
* * * * **
23656180 TTTCATGGGTTGACTTATGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTT
607 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTT
23656245 G
672 G
* ** * *
23656246 CAGCAGCATGATCGACAGCACGCAGGGGGGGACC-GGCCGATCCCCATCTTCTG-ATTTCGGCCT
1 CAGCAGCAGGATCGACAGCACGCA-GGGGGGACCGGGCCGATCCCCGGCTTGTGCA-TTCTGCCT
** * * * *
23656309 CTTAGGCCGGCTGAGCGCCCG-CACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
64 CTCCGGTCGGCTGAGCG-CCGACACGCTCGTTTCATGGGTTGGCTCAGGCATACGGAGTTCATTC
23656373 CATGTCTAAG
128 CATGTCTAAG
23656383 GATACGGAGT
Statistics
Matches: 1227, Mismatches: 198, Indels: 183
0.76 0.12 0.11
Matches are distributed among these distances:
644 38 0.03
645 2 0.00
647 1 0.00
648 1 0.00
649 1 0.00
650 4 0.00
652 1 0.00
655 1 0.00
656 3 0.00
661 1 0.00
667 1 0.00
669 1 0.00
670 4 0.00
672 2 0.00
673 198 0.16
674 6 0.00
675 1 0.00
676 1 0.00
677 1 0.00
678 1 0.00
680 135 0.11
681 155 0.13
682 11 0.01
683 35 0.03
684 8 0.01
685 260 0.21
686 122 0.10
687 2 0.00
688 1 0.00
689 1 0.00
690 1 0.00
692 7 0.01
693 3 0.00
694 3 0.00
695 3 0.00
696 4 0.00
697 5 0.00
698 3 0.00
699 1 0.00
700 1 0.00
702 1 0.00
703 1 0.00
704 1 0.00
705 4 0.00
706 36 0.03
707 11 0.01
708 4 0.00
709 2 0.00
710 1 0.00
712 3 0.00
713 1 0.00
714 3 0.00
715 2 0.00
716 2 0.00
717 2 0.00
719 3 0.00
720 119 0.10
721 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (672 bp):
CAGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCT
CCGGTCGGCTGAGCGCCGACACGCTCGTTTCATGGGTTGGCTCAGGCATACGGAGTTCATTCCAT
GTCTAAGCCCCACCCAGACCGAGGGTTGTGGCAGCAGAACAAGCAAAGAGATCGACAGCACGCAA
AGGGGGACCTAGCTGATCCCCGACTTACGCATTATGCCTCTCCGACCGGTTGAGCACCCGCATGC
TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGAAGTGCATTCC
CAGTCTAAGATCGAGCCAGACCAAGGGTTGCGACAACAAGATCAGTAACACGTAAGGGGGACCGG
GCCGATCCCCGGCTTACGCATTCTACATCTCTAGCCAGCTGAGCCCCCGCACGCCCGTTTCATGG
GTTCGCTTAGGCATAAAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAAGGTTGTGGCAGC
GAGACCGGCAACATGCAGAGGGGAATCGGGCCGATCCCCAGCTTGCTCATTATGCCTCTCCAGCT
GGCTCAGTGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
GATCAGACCGGACCAAGGGTTG
Found at i:23655578 original size:159 final size:156
Alignment explanation
Indices: 23655202--23655639 Score: 369
Period size: 159 Copynumber: 2.8 Consensus size: 156
23655192 CCCAGTCTAA
* * * *
23655202 GCATACGGAGTGCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGATCAGTA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCA
** * *** *
23655267 ACACGTAAGGGGGACCGGGCCATCCCTGGCTTACGCATTCTGCATCTTTGGCCGACTGAGCCCCC
65 ACACGTAAGGGGGACCGGGCCATCCCCAGCTTACGCATTATGCATCTCCAGCCGACTCAGCCCCC
* *
23655332 GCACGCCCGTTTCATGGGTTCGCTTAG
130 ACACGCCCATTTCATGGGTTCGCTTAG
* ** * * **
23655359 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCAAAGGTTGTGGCAGTGGGATCGGC
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGC
* * * ** * * * **
23655423 AACATGTAGAGGGGGACTGGGCTGATCCCCAGCTTGTGCATTATGCCTCTCCAGCTGGCTCAGTG
64 AACACGTA-AGGGGGACCGGGC-CATCCCCAGCTTACGCATTATGCATCTCCAGCCGACTCAGCC
* * **
23655488 CCCACATGCTCATTTTGTGGGTT-GACTTAG
127 CCCACACGCCCATTTCATGGGTTCG-CTTAG
* * *
23655518 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * * * *
23655583 GCACG-CAGGGGGATCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTCCAGTCGACT
65 ACACGTAAGGGGGACCGGGCC-ATCCCCAGCTTACGCATTATGCATCTCCAGCCGACT
23655640 GATCCCCGGC
Statistics
Matches: 214, Mismatches: 59, Indels: 16
0.74 0.20 0.06
Matches are distributed among these distances:
156 3 0.01
157 90 0.42
158 19 0.09
159 101 0.47
160 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAA
CACGTAAGGGGGACCGGGCCATCCCCAGCTTACGCATTATGCATCTCCAGCCGACTCAGCCCCCA
CACGCCCATTTCATGGGTTCGCTTAG
Found at i:23655743 original size:353 final size:359
Alignment explanation
Indices: 23655334--23655996 Score: 878
Period size: 365 Copynumber: 1.8 Consensus size: 359
23655324 GAGCCCCCGC
* **
23655334 ACGCCCGTTTCATGGGTTCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
1 ACGCCCGTTTCATGGGTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACC
* *** * *
23655399 AAAGG-T-T-GT-GG-C-AGTGGGATCGGCAACATGTAGAGGGGGACTGGGCTGATCCCCAGCTT
66 AAAGGTTATGGTAGGACGAGCGGGATCGGCAACACACAAAGGGGGACCGGGCTGATCCCCAGCTT
* ** * *
23655458 GTGCATTATGCCTCTCC-AGCTGGCTCAGTGCCCACATGCTCATTTTGTGGGTTGACTTAGGCAT
131 GTGCATTATGCATCTCCGA-CTGGCTCAGCACCCACACGCTCATTTTG-AGGTTGACTTAGGCAT
* * *
23655522 AC-GAAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGCAGGATCGACAGCA
194 ACAG-AGTTCATCCCCAGTCTAAGATCAGACCGGACCAAGGGTTGAGGTAGCAGGATCGACAGCA
*
23655586 CGCAGG-GGGA-TCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTCCAGTCGACTGATCCCCGG
258 CGCAGGAGGGACTCG-GCCGATCCCCGGCTTACGCATTCTGCCTCTCCAGTCGACTGATCCCCGG
23655649 CTTGCGCTTTCTACCTCTTCGGCCAGTTGAGCACCCAT
322 CTTGCGCTTTCTACCTCTTCGGCCAGTTGAGCACCCAT
* *
23655687 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACC
1 ACGCCCGTTTCATGGGTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACC
* * *
23655752 GAGGGTTATGGTAGCAGGACCGGTAGCGGGATTGGCAACACACAAAGGGGGACCGGGCTGATCCC
66 AAAGGTTATGGT---AGGA-C-G-AGCGGGATCGGCAACACACAAAGGGGGACCGGGCTGATCCC
* * * *
23655817 CGGCTTGTGCATTATGCATCTCCGACTGGCTGAGCACCCGCACGCTCGTTTTGAGGTTGACTTAG
125 CAGCTTGTGCATTATGCATCTCCGACTGGCTCAGCACCCACACGCTCATTTTGAGGTTGACTTAG
* **
23655882 GCATACAGAGTTCATCCCCAGTCTAAGATCAGATCGGACTGAGGGTTGAGGTAGCAGGATCGACA
190 GCATACAGAGTTCATCCCCAGTCTAAGATCAGACCGGACCAAGGGTTGAGGTAGCAGGATCGACA
* *
23655947 GCACGCAGGAGGGACTTGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC
255 GCACGCAGGAGGGACTCGGCCGATCCCCGGCTTACGCATTCTGCCTCTCC
23655997 GACCGCATGA
Statistics
Matches: 262, Mismatches: 32, Indels: 20
0.83 0.10 0.06
Matches are distributed among these distances:
353 63 0.24
354 1 0.00
355 1 0.00
356 2 0.01
360 2 0.01
362 1 0.00
364 77 0.29
365 112 0.43
366 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (359 bp):
ACGCCCGTTTCATGGGTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACC
AAAGGTTATGGTAGGACGAGCGGGATCGGCAACACACAAAGGGGGACCGGGCTGATCCCCAGCTT
GTGCATTATGCATCTCCGACTGGCTCAGCACCCACACGCTCATTTTGAGGTTGACTTAGGCATAC
AGAGTTCATCCCCAGTCTAAGATCAGACCGGACCAAGGGTTGAGGTAGCAGGATCGACAGCACGC
AGGAGGGACTCGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCAGTCGACTGATCCCCGGCTTG
CGCTTTCTACCTCTTCGGCCAGTTGAGCACCCAT
Found at i:23656084 original size:158 final size:158
Alignment explanation
Indices: 23655811--23656382 Score: 598
Period size: 158 Copynumber: 3.6 Consensus size: 158
23655801 GGACCGGGCT
* * *
23655811 GATCCCCGGCTTGTGCATTATGCATCTCCGACTGGCTGAGCACCCGCACGCTCGTTT--TGAGGT
1 GATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTG-GGT
* * * *
23655874 TGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGATCAGATCGGACTGAGGGTTGAGGTAGCA
65 TGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAGATCAGACCGGACTGAGGGTTGAGGCAGCA
*
23655938 GGATCGACAGCACGCAGGAGGGACTTGGCC
129 GGATCGACAGCACGCAGGAGGGACTCGGCC
*
23655968 GATCCCCGGCTTGCGCATTCTGCCTCTCCGACC-GCATGAGCACCCGCACGC-CTGTTTCGTGGG
1 GATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGC-TGAGCACCCGCACGCTC-GTTTCGTGGG
* * ** * *
23656031 TTGTCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGC
64 TTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACTGAGGGTTGAGGCAGC
* * *
23656095 -GAGACCGGCAGCACGTAGAGAGGGA-TCGAGCC
128 AG-GATCGACAGCACGCAG-GAGGGACTCG-GCC
* * * * * *
23656127 -ATCCCCGGCTTGCGCATTATGCCTCTTCGGCCTGCTCAACACCCGCACGCTCGTTTCATGGGTT
1 GATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
*
23656191 GACTTATGCATACGGAGTTCATTCC-TAGTCTAAGATCAGACCGGACTGAGGGTTGCA-GCAGCA
66 GACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACTGAGGGTTG-AGGCAGCA
* *
23656254 TGATCGACAGCACGCAGGGGGGGAC-CGGCC
129 GGATCGACAGCACGCA-GGAGGGACTCGGCC
** ** * * *
23656284 GATCCCCATCTT-CTG-ATT-TCGGCCTCTTAGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGG
1 GATCCCCGGCTTGC-GCATTAT--GCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGG
*
23656346 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
63 GTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
23656383 GATACGGAGT
Statistics
Matches: 346, Mismatches: 47, Indels: 43
0.79 0.11 0.10
Matches are distributed among these distances:
156 4 0.01
157 63 0.18
158 260 0.75
159 19 0.05
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (158 bp):
GATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTGAGGCAGCAGG
ATCGACAGCACGCAGGAGGGACTCGGCC
Found at i:23656332 original size:316 final size:315
Alignment explanation
Indices: 23655812--23656382 Score: 796
Period size: 316 Copynumber: 1.8 Consensus size: 315
23655802 GACCGGGCTG
* * *
23655812 ATCCCCGGCTTGTGCATTATGCATCTCCGACTGGCTGAGCACCCGCACGCTCGTTTTGAGGTTGA
1 ATCCCCGGCTTGCGCATTATGCATCTCCGACTGGCTCAACACCCGCACGCTCGTTTTGAGGTTGA
* *
23655877 CTTAGGCATACAGAGTTCATCCCCAGTCTAAGATCAGATCGGACTGAGGGTTGAGGTAGCAGGAT
66 CTTAGGCATACAGAGTTCATCCCCAGTCTAAGATCAGACCGGACTGAGGGTTGAGGCAGCAGGAT
* * * *
23655942 CGACAGCACGCAGGAGGGACTTGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGCATGA
131 CGACAGCACGCAGGAGGGACTCGGCCGATCCCCAGCTTGCGCATTCGGCCTCTCAGACCGCATGA
* *
23656007 GCACCCGCACGCCTGTTTCGTGGGTTGTCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
196 GCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
23656072 GCCGGACCGAGGGTTGTGGCAGCGAGACCGGCAGCACGTAGAGAGGGATCGAGCC
261 GCCGGACCGAGGGTTGTGGCAGCGAGACCGGCAGCACGTAGAGAGGGATCGAGCC
* * *
23656127 ATCCCCGGCTTGCGCATTATGCCTCTTCGGCCT-GCTCAACACCCGCACGCTCGTTTCATG-GGT
1 ATCCCCGGCTTGCGCATTATGCATC-TCCGACTGGCTCAACACCCGCACGCTCGTTT--TGAGGT
* * * *
23656190 TGACTTATGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGCA-GCAGCA
63 TGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGATCAGACCGGACTGAGGGTTG-AGGCAGCA
* * * * *
23656254 TGATCGACAGCACGCAGGGGGGGAC-CGGCCGATCCCCATCTT-CTG-ATTTCGGCCTCTTAGGC
127 GGATCGACAGCACGCA-GGAGGGACTCGGCCGATCCCCAGCTTGC-GCA-TTCGGCCTCTCAGAC
* *
23656316 CGGC-TGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
189 C-GCATGAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
23656380 AAG
253 AAG
23656383 GATACGGAGT
Statistics
Matches: 223, Mismatches: 25, Indels: 15
0.85 0.10 0.06
Matches are distributed among these distances:
315 46 0.21
316 165 0.74
317 12 0.05
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (315 bp):
ATCCCCGGCTTGCGCATTATGCATCTCCGACTGGCTCAACACCCGCACGCTCGTTTTGAGGTTGA
CTTAGGCATACAGAGTTCATCCCCAGTCTAAGATCAGACCGGACTGAGGGTTGAGGCAGCAGGAT
CGACAGCACGCAGGAGGGACTCGGCCGATCCCCAGCTTGCGCATTCGGCCTCTCAGACCGCATGA
GCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
GCCGGACCGAGGGTTGTGGCAGCGAGACCGGCAGCACGTAGAGAGGGATCGAGCC
Found at i:23656394 original size:26 final size:26
Alignment explanation
Indices: 23656358--23656408 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23656348 TGGCTTAGGC
23656358 ATACGGAGTTCATT-CCATGTCTAAGG
1 ATACGGAGTTCATTCCCA-GTCTAAGG
23656384 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
23656409 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:23657128 original size:26 final size:26
Alignment explanation
Indices: 23657076--23657128 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23657066 GTTGACTTAG
* *
23657076 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
23657102 GCATACAGAGTTCATTCCCAATGTAA
1 GCATACAGAGTTCATCCCCAATCTAA
23657128 G
1 G
23657129 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:23657568 original size:158 final size:158
Alignment explanation
Indices: 23657135--23657605 Score: 527
Period size: 158 Copynumber: 3.0 Consensus size: 158
23657125 TAAGATCGGA
* * * * *
23657135 CCGGATCGAGGGTTGCGGTAGCAAGATCGACAGCACGCAAGGGGGATCGGGTCGATCCCCGGCTT
1 CCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTT
* * * *
23657200 GCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCCTAGGCATA
66 GGGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
* *
23657265 GGGAGTTCATTCCATGTCTAAGCCCCAG
131 CGGAGTTCATTCCATGTCTAAGCACCAG
* * * * ** *
23657293 CCGGACCGAGGGTTGTGGCAGCGGGA-CCAGCAGCACGCAGAGGGGGACTAGGCCGATCACCGGC
1 CCGGACCGAGGGTTGCGGTAGCAGGATCGA-CAGCACGCAG-GGGGGACCGGGCCGATCCCCGGC
* * * * ** ** *
23657357 -TGGTGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCACACTTGTTTCGTGGGTTTACTTATGC
64 TTGG-GCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGC
* *
23657421 ATATGGAGTTCATTCC-TAGTCTAAG-ATCAG
128 ATACGGAGTTCATTCCAT-GTCTAAGCACCAG
** * * * *
23657451 ATTGGACTGAGGATTGCGGTAGCAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGACT
1 -CCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCT
* * *
23657516 TGGGCATTCTACCTCTTCGGTCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCAT
65 TGGGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
23657581 ACGGAGTTCATTCCATGTCTAAGCA
130 ACGGAGTTCATTCCATGTCTAAGCA
23657606 TACGGAGTTC
Statistics
Matches: 250, Mismatches: 54, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 125 0.50
159 121 0.48
160 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (158 bp):
CCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTT
GGGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
CGGAGTTCATTCCATGTCTAAGCACCAG
Found at i:23657607 original size:26 final size:26
Alignment explanation
Indices: 23657577--23657629 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23657567 GTTGGCTTAG
23657577 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
23657603 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23657629 G
1 G
23657630 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23658596 original size:183 final size:184
Alignment explanation
Indices: 23658224--23658677 Score: 608
Period size: 183 Copynumber: 2.5 Consensus size: 184
23658214 CCACCCGTTT
* * * ** * *
23658224 GATCCCC-AGCTTGCGCATCCTTCCTCTCTGATCGGCTGAGTGCCCGCACTTTCATTTCGTGGGT
1 GATCCCCGA-CTTGCGCATTCTACCTCTCCGATCGGCTGAGCACCCGCACTCTCGTTTCGTGGGT
23658288 TGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAACGTAAGATTA
65 TGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAACGTAAGATTA
* * *
23658353 GACCGGATCGAGGGTTGCGGTAGCAGGATCAGCAGCACGCAGGGGGGATCGGGTC
130 GACCGGACCGAGGGTTGCGGTAGCAGGATCAGCAGCACACAGGGGGGATCGGGCC
* *
23658408 GATCCCCGACTTGCGCATTCTACCTCTCCGATCGGCTAAGCACCCACACTCTCGTTTCGTGGGTT
1 GATCCCCGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCACCCGCACTCTCGTTTCGTGGGTT
* * * * *
23658473 GACTTAGGCATATGGAGTTCATCCCCAGTCTAAGTATAC-GAGTTCATTCCCAGTC-TAAGATTG
66 GACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCA-ACGTAAGATTA
* * *
23658536 GACCGGACCGAGGGTTGCGGTAGTAGGATCGGCAGCATACAGGGGGGATCGGGCC
130 GACCGGACCGAGGGTTGCGGTAGCAGGATCAGCAGCACACAGGGGGGATCGGGCC
* * * * * * *
23658591 GATCCCCGACTTACGCATTCTACCTCTCCGATCAGTTGAGCACCGGCACGCCCGTTTCATGGGTT
1 GATCCCCGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCACCCGCACTCTCGTTTCGTGGGTT
* *
23658656 GGCTTAGGCATAGGGAGTTCAT
66 GACTTAGGCATACGGAGTTCAT
23658678 TCCATGTCTA
Statistics
Matches: 237, Mismatches: 31, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
183 145 0.61
184 91 0.38
185 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.24
Consensus pattern (184 bp):
GATCCCCGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCACCCGCACTCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAACGTAAGATTAG
ACCGGACCGAGGGTTGCGGTAGCAGGATCAGCAGCACACAGGGGGGATCGGGCC
Found at i:23660232 original size:26 final size:26
Alignment explanation
Indices: 23660203--23660255 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23660193 GTTGGCTTAG
23660203 GCATACGAAGTTCAAT-CCATGTCTAA
1 GCATACGAAGTTCAATCCCA-GTCTAA
* *
23660229 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
23660255 G
1 G
23660256 ATTGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:23660597 original size:171 final size:169
Alignment explanation
Indices: 23660229--23660939 Score: 396
Period size: 184 Copynumber: 4.2 Consensus size: 169
23660219 CCATGTCTAA
****
23660229 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTTGTGACAGCAGGACCAGCA
1 GCATACGGAGTTCA-TCCCAGTCTAAGCCCCAACCAGACCGAGGGTTGTGACAGCAGGACCAGCA
* * *
23660294 GCAGGATCGACAGCACGCAGGGGGGATCGGGCTGATCCCATACTTGCACATTCTGCCTCTCCGAC
65 GCAGGATCGACAGCACGCAGGGGGGATCGGGCTGATCCCAGACTTACACATTATGCCTCTCCGAC
* ** ** *
23660359 TGACTGAGCACCTGCACGCTTGTTTTGTGGGTTGGCTTAG
130 TGACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
* * * * * **
23660399 GCAAACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGA-TTGAC
1 GCATACGGAGTTCATCCCA-GTCTAAGCCCCAACCAGACCGAGGGTTGTGACAGCAGGACCAG-C
* *
23660463 AGC-GAGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCTC-GGCTTACGCATTATGCCTCTC
64 AGCAG-GATCGACAGCACGCAG-GGGGGATCGGGCTGATCC-CAGACTTACACATTATGCCTCTC
* * * ** *
23660526 TGGCTGGCTGAGTGCCCGCACTCTCATTTCATGGGTTGACTTAG
126 CGACTGACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
* ** * ** * ** *
23660570 GCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
1 GCATACGGAGTTCAT-CCCAGTCTAAGC-CCCA-A--CCAGACCGAGGGT-TG-T--GA-CAG-C
**** * * * * *
23660635 TGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGCCT-ATCCCTGGCTTACAAA
55 --A-GG-ACCAGCAGCAGGATCGACAGCACGCAGGGGGGATCGGG-CTGATCCCAGACTTACACA
* * * * * * * *
23660699 TTCTACCTCTCCGACTGGCTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAG
115 TTATGCCTCTCCGACTGACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
* * * * *
23660754 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC-GAACCGAGGGTTGTGGCAGCGGGACC-G-
1 GCATACGGAGTTCATCCCA-GTCTAAGCCCCAACCAG-ACCGAGGGTTGTGACAGCAGGACCAGC
* * * * *
23660816 -GCA-G--C-AC-GTA-G-A-GGGGGACCGGGCTGATCCCCAG-CTTGCGCATTATGCCTCTTCG
64 AGCAGGATCGACAGCACGCAGGGGGGATCGGGCTGAT-CCCAGACTTACACATTATGCCTCTCCG
* * * * * *
23660871 -GTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
128 ACT-GACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
* *
23660913 GCATATGGAGTTTATTCCCAGTCTAAG
1 GCATACGGAGTTCA-TCCCAGTCTAAG
23660940 ATCAGATCGG
Statistics
Matches: 416, Mismatches: 95, Indels: 71
0.71 0.16 0.12
Matches are distributed among these distances:
158 3 0.01
159 81 0.19
160 9 0.02
161 1 0.00
162 2 0.00
163 2 0.00
164 1 0.00
166 1 0.00
167 2 0.00
169 7 0.02
170 65 0.16
171 88 0.21
172 6 0.01
174 1 0.00
175 10 0.02
176 2 0.00
177 1 0.00
178 1 0.00
179 2 0.00
180 9 0.02
181 1 0.00
183 7 0.02
184 90 0.22
185 21 0.05
186 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (169 bp):
GCATACGGAGTTCATCCCAGTCTAAGCCCCAACCAGACCGAGGGTTGTGACAGCAGGACCAGCAG
CAGGATCGACAGCACGCAGGGGGGATCGGGCTGATCCCAGACTTACACATTATGCCTCTCCGACT
GACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
Found at i:23660600 original size:26 final size:26
Alignment explanation
Indices: 23660570--23660622 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23660560 GTTGACTTAG
*
23660570 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
23660596 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
23660622 G
1 G
23660623 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:23660642 original size:367 final size:342
Alignment explanation
Indices: 23659922--23660939 Score: 865
Period size: 355 Copynumber: 2.9 Consensus size: 342
23659912 TCTCCAGCTG
* * * * * * * * *
23659922 GACCGAGGGTTGTGGCAGCGGGAACGGCAGCAAGCAGAGGGGGACTGGGCCGATCCCCGGCTTGC
1 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGCCTATCCCTGACTTAC
* * * * * * * * * * * * *
23659987 ACATTATGCCTCTTCTGTC-GGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTTGGCATAC
65 AAATTCTACCTC-TCCGACTGACTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCAAAC
** ** * ** * *
23660051 AGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACCGAGCATTGTGGTAGTAGGATCGACAGCAC
129 AGAGTTCATT-CCATGTCTAAGCCCCAG-CCGAACCGAGGGTTGTGGCAGCGGGACCGGCAGCAC
* ** * ** * * *
23660114 GCAG-GGGGGACCGAG-TCGATCCCCGAG-TTGTGCATTCTATCTC-TCTGGTCGGTTGAACGCC
192 GCAGAGGGGGACCGGGCT-GATCCCC-AGCTTACGCATTATGCCTCTTC-GGTCGGCTCAGCGCC
** * * * *
23660175 CGTTCGTTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCAAT-CCATGTCTAAGCATACGGAG
254 CGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTC-ATCCCA-GTCTAAGCATACAGAG
*
23660239 TTCATTCCCAGTCTAAGATTGAACCA
317 TTCATTCCCAGTCTAAGATCGAACCA
*
23660265 GACCGAGGGTTGTGACAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGATCGGG-CTGA
1 GACCGAGGGTTGT--------G----GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCT-A
* * * ** ** **
23660329 TCCCAT-ACTTGCACATTCTGCCTCTCCGACTGACTGAGCACCTGCACGCTTGTTTTGTGGGTTG
53 TCCC-TGACTTACAAATTCTACCTCTCCGACTGACTGAGCACCCACACGCCCGTTTCATGGGTTG
23660393 GCTTAGGCAAACAGAGTTCATTCCATGTCTAAGCCCCAGCC-AGACCGAGGGTTGTGGCAGCAGG
117 GCTTAGGCAAACAGAGTTCATTCCATGTCTAAGCCCCAGCCGA-ACCGAGGGTTGTGGCAGC-GG
* * *
23660457 ATTGACAGCGAGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCTCGGCTTACGCATTATGCC
180 ---GAC--C--G---G-CAGCACGCAGAGGGGGACCGGGCTGATCCCCAGCTTACGCATTATGCC
* * *
23660522 TC-TCTGG-CTGGCTGAGTGCCCGCACTCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
234 TCTTC-GGTC-GGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * *
23660585 CCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCA
297 -CCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCA
* * *
23660632 GACTGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGCCTATCCCTGGCTTACA
1 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCTATCCCTGACTTACA
* * * **
23660697 AATTCTACCTCTCCGACTGGCTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGG
66 AATTCTACCTCTCCGACTGACTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCAAACAG
*
23660762 AGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGTAG
131 AGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAG
*
23660827 AGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGC
196 AGGGGGACCGGGCTGATCCCCAGCTTACGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGC
* * * *
23660892 TCGTTTCGTGGGTTGACTTAGGCATATGGAGTTTATTCCCAGTCTAAG
261 TCATTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTCTAAG
23660940 ATCAGATCGG
Statistics
Matches: 548, Mismatches: 85, Indels: 84
0.76 0.12 0.12
Matches are distributed among these distances:
343 116 0.21
344 5 0.01
347 1 0.00
349 1 0.00
351 4 0.01
353 9 0.02
354 101 0.18
355 162 0.30
356 3 0.01
358 2 0.00
359 1 0.00
360 1 0.00
362 1 0.00
366 14 0.03
367 123 0.22
368 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (342 bp):
GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCTATCCCTGACTTACA
AATTCTACCTCTCCGACTGACTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCAAACAG
AGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAG
AGGGGGACCGGGCTGATCCCCAGCTTACGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGC
TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAGAGTTCATTCCC
AGTCTAAGATCGAACCA
Found at i:23661059 original size:158 final size:157
Alignment explanation
Indices: 23660596--23661097 Score: 537
Period size: 158 Copynumber: 3.2 Consensus size: 157
23660586 CCCAATCTAA
* * *
23660596 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGTGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGTAGGATCGACA
* ** *
23660661 GCACGCAGGGGGGACCGGGCCT-ATCCCTGGCTTACAAATTCTACCTCTCCGA-CTGGCTGAGCG
66 GCACGCAGGGGGGACCGGG-CTGATCCC-GGCTTGCGCATTCTGCCTCTCCGATC-GGCTGAGCG
* * *
23660724 CCCACACGCCCGTTTCATGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * ** * *
23660754 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGAACCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACTGAGGGTTGTGGCAGTAGGATCGA
* * * * * *
23660817 CAGCACGTAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGC
64 CAGCACGCAG-GGGGGACCGGGCTGAT-CCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
*
23660882 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
23660913 GCATATGGAGTTTATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTGCGGTAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGTAGGATCGACA
* * *
23660978 GCACGCAGGGGGGATCGGGTTGATCTCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCC
66 GCACGCAGGGGGGACCGGGCTGATC-CCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
* *
23661043 CGTAAGCTCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
23661071 GCATACGGAGTTCACT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
23661098 CATACGGAGT
Statistics
Matches: 277, Mismatches: 57, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
157 7 0.03
158 149 0.54
159 114 0.41
160 7 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGTAGGATCGACA
GCACGCAGGGGGGACCGGGCTGATCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:23668362 original size:158 final size:157
Alignment explanation
Indices: 23668088--23668395 Score: 377
Period size: 158 Copynumber: 1.9 Consensus size: 157
23668078 GATCAAACTG
* * * *
23668088 GACCGAGGGTTACGACAGCAGGATCGACAGCACGTAGGTGGGAGTGAGCCGATCCCCAGATTGGG
1 GACCGAGGGTTACGACAGCAGGATCGACAGCACGTAGGGGGGACTGAGCCAATCCCCAGATTGCG
* ** * * *
23668153 CATTCTGCCTCTCCAGTCGACTGAGCGCCCGCATGCCTGTTTCATGCGTTGGCTTAGGCATAGGG
66 CATTCTACCTCTCCACCCGACTGAACGCCCACA-GCCTGTTTCATGCGTTGGCTTAGGCATACGG
23668218 AGTTCATTCCATGTCTAAGCCCCAGCCA
130 AGTTCATTCCATGTCTAAGCCCCAGCCA
** * * * * *
23668246 GACCGAGGGTTGTGGCAGCGGGATCG-GAGCACGTAGAGGGGGACTGGGCCAATCCCCAGCTTGC
1 GACCGAGGGTTACGACAGCAGGATCGACAGCACGTAG-GGGGGACTGAGCCAATCCCCAGATTGC
* * *
23668310 GCATTCTACCTCTCCACCCGATTGAACGCCCACA-CACTCGTTTCGTGGGTTGGCTTAGGCATAC
65 GCATTCTACCTCTCCACCCGACTGAACGCCCACAGC-CT-GTTTCATGCGTTGGCTTAGGCATAC
*
23668374 GGAGTTTATTCCATGTCTAAGC
128 GGAGTTCATTCCATGTCTAAGC
23668396 ATACAGAGTT
Statistics
Matches: 126, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
156 1 0.01
157 11 0.09
158 114 0.90
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GACCGAGGGTTACGACAGCAGGATCGACAGCACGTAGGGGGGACTGAGCCAATCCCCAGATTGCG
CATTCTACCTCTCCACCCGACTGAACGCCCACAGCCTGTTTCATGCGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCCCCAGCCA
Found at i:23668397 original size:26 final size:26
Alignment explanation
Indices: 23668368--23668420 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23668358 GTTGGCTTAG
* *
23668368 GCATACGGAGTTTATTC-CATGTCTAA
1 GCATACAGAGTTCATTCGCA-GTCTAA
23668394 GCATACAGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCGCAGTCTAA
23668420 G
1 G
23668421 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCGCAGTCTAA
Found at i:23669221 original size:26 final size:26
Alignment explanation
Indices: 23669185--23669236 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
23669175 TTGACTTAAC
23669185 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
23669211 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
23669237 ATCTAACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:23669417 original size:26 final size:26
Alignment explanation
Indices: 23669368--23669420 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23669358 GTTGGCTTAG
*
23669368 GCATACAGAGTTCATTGCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
23669394 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
23669420 G
1 G
23669421 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:23671247 original size:59 final size:59
Alignment explanation
Indices: 23671182--23671473 Score: 326
Period size: 59 Copynumber: 4.9 Consensus size: 59
23671172 TTGTGCAGGA
* * *
23671182 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTAAATTTTAATTTCGAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAATTTTATTTTCAAGG
* * *
23671241 AAAATTGATACTTTCAACTTTT-TCTCAAAAAT-TGATTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCT-AAAAATAT--TTTTTTTGAAATTTTATTTTCAAGG
* * *
23671301 AAAATTGATACTTTCAATTTTTCCCCAAAAATA-TTTTTTGGAAACTTTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAA-TTTTATTTTCAAGG
* ** * *
23671360 AAAATTGATACTTTCAACTTTT-CCTAAAAAAAAGCCCTTTTCTGAAATTTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCT-AAAAATA--TTTTTTTTGAAATTTTATTTTCAAGG
*
23671421 AAAATTGATACTTTCAACTTTTCTCC-AAAAATATTCTTTTTTG-ATTTTTATTT
1 AAAATTGATACTTTCAACTTTTC-CCTAAAAATATT-TTTTTTGAAATTTTATTT
23671474 AAAGAAAATA
Statistics
Matches: 196, Mismatches: 24, Indels: 26
0.80 0.10 0.11
Matches are distributed among these distances:
58 15 0.08
59 76 0.39
60 53 0.27
61 42 0.21
62 8 0.04
63 2 0.01
ACGTcount: A:0.34, C:0.12, G:0.07, T:0.47
Consensus pattern (59 bp):
AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAATTTTATTTTCAAGG
Found at i:23671381 original size:119 final size:119
Alignment explanation
Indices: 23671182--23671460 Score: 389
Period size: 119 Copynumber: 2.3 Consensus size: 119
23671172 TTGTGCAGGA
* ** *
23671182 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTAAATTTTAATTTCGAGGAAAATT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAAATTTTAATTTCAAGGAAAATT
* * ** * *
23671247 GATACTTTCAACTTTTTCTCAAAAATTG-ATTTTTTTGAAAATTTATTTTTAAGG
65 GATACTTTCAACTTTTCCTAAAAAAAAGCACTTTTCTGAAAATTTATTTTTAAGG
* *
23671301 AAAATTGATACTTTCAATTTTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAGGAAAATT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAA-TTTTAATTTCAAGGAAAATT
* *
23671366 GATACTTTCAACTTTTCCTAAAAAAAAGCCCTTTTCTGAAATTTTATTTTTAAGG
65 GATACTTTCAACTTTTCCTAAAAAAAAGCACTTTTCTGAAAATTTATTTTTAAGG
*
23671421 AAAATTGATACTTTCAACTTTTCTCCAAAAATATTCTTTT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATT-TTTT
23671461 TTGATTTTTA
Statistics
Matches: 141, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
118 9 0.06
119 73 0.52
120 55 0.39
121 4 0.03
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (119 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTTAATTTCAAGGAAAATTG
ATACTTTCAACTTTTCCTAAAAAAAAGCACTTTTCTGAAAATTTATTTTTAAGG
Found at i:23671516 original size:22 final size:21
Alignment explanation
Indices: 23671488--23671560 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 21
23671478 AAAATAAAAT
*
23671488 AATAAAACAAAATAAAAGTGAA
1 AATAAAACAAAATAAAA-AGAA
23671510 AATAAAA-AAAATAATAAAGAA
1 AATAAAACAAAATAA-AAAGAA
* *
23671531 AAGTAAAACCAAGATAAAAAATAA
1 AA-TAAAA-CAAAAT-AAAAAGAA
23671555 AATAAA
1 AATAAA
23671561 GGTAAAAAGG
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
21 12 0.28
22 14 0.33
23 4 0.09
24 11 0.26
25 2 0.05
ACGTcount: A:0.75, C:0.04, G:0.07, T:0.14
Consensus pattern (21 bp):
AATAAAACAAAATAAAAAGAA
Found at i:23671608 original size:14 final size:13
Alignment explanation
Indices: 23671591--23671632 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
23671581 AACCTAATCT
23671591 AATAAATAAAAATA
1 AATAAATAAAAA-A
23671605 AATAAATAAAAAA
1 AATAAATAAAAAA
*
23671618 AACAAATAAAAAA
1 AATAAATAAAAAA
23671631 AA
1 AA
23671633 AACTTGGAGC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
13 15 0.56
14 12 0.44
ACGTcount: A:0.83, C:0.02, G:0.00, T:0.14
Consensus pattern (13 bp):
AATAAATAAAAAA
Found at i:23671624 original size:17 final size:17
Alignment explanation
Indices: 23671591--23671634 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
23671581 AACCTAATCT
*
23671591 AATAAATAAAAATAAATA
1 AATAAA-AAAAACAAATA
23671609 AATAAAAAAAACAAATA
1 AATAAAAAAAACAAATA
23671626 AA-AAAAAAA
1 AATAAAAAAA
23671635 CTTGGAGCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 7 0.28
17 12 0.48
18 6 0.24
ACGTcount: A:0.84, C:0.02, G:0.00, T:0.14
Consensus pattern (17 bp):
AATAAAAAAAACAAATA
Found at i:23671633 original size:14 final size:14
Alignment explanation
Indices: 23671594--23671633 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
23671584 CTAATCTAAT
* *
23671594 AAATAAAAATAAAT
1 AAATAAAAAAAAAC
23671608 AAAT-AAAAAAAAC
1 AAATAAAAAAAAAC
23671621 AAATAAAAAAAAA
1 AAATAAAAAAAAA
23671634 ACTTGGAGCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.12
Consensus pattern (14 bp):
AAATAAAAAAAAAC
Found at i:23672528 original size:28 final size:27
Alignment explanation
Indices: 23672436--23672533 Score: 71
Period size: 22 Copynumber: 3.6 Consensus size: 27
23672426 AACCTTCCAA
*
23672436 AATAAAAATCAAATAAAAAAATAATAGAT
1 AATAAAGAT-AAATAAAAAAATAATA-AT
23672465 AATTAGAAAAGATAAATAAAAAAAT-AT--T
1 AA-T---AAAGATAAATAAAAAAATAATAAT
*
23672493 -AT-AGGATAAATAAAAAAATAATAAT
1 AATAAAGATAAATAAAAAAATAATAAT
*
23672518 AATAACAGATATATAA
1 AATAA-AGATAAATAA
23672534 TTAGATAAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 21
0.69 0.05 0.26
Matches are distributed among these distances:
22 16 0.29
23 2 0.04
25 1 0.02
26 3 0.05
27 2 0.04
28 9 0.16
29 2 0.04
30 1 0.02
31 2 0.04
32 12 0.22
33 5 0.09
ACGTcount: A:0.68, C:0.02, G:0.06, T:0.23
Consensus pattern (27 bp):
AATAAAGATAAATAAAAAAATAATAAT
Found at i:23672663 original size:15 final size:16
Alignment explanation
Indices: 23672643--23672680 Score: 69
Period size: 15 Copynumber: 2.4 Consensus size: 16
23672633 TAAAATATAG
23672643 AATAAAAAATAA-AAA
1 AATAAAAAATAACAAA
23672658 AATAAAAAATAACAAA
1 AATAAAAAATAACAAA
23672674 AATAAAA
1 AATAAAA
23672681 TTGGACTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.13
Consensus pattern (16 bp):
AATAAAAAATAACAAA
Found at i:23672857 original size:6 final size:6
Alignment explanation
Indices: 23672848--23672894 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
23672838 TTTTTTATAT
* * *
23672848 TTTTTG TTTTTT TTGTTTG CTTTTG TTTTTG GTTTTG TTTTT- TTTTT
1 TTTTTG TTTTTG TT-TTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTT
23672895 TTAACCAAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
5 5 0.15
6 25 0.74
7 4 0.12
ACGTcount: A:0.00, C:0.02, G:0.15, T:0.83
Consensus pattern (6 bp):
TTTTTG
Found at i:23672862 original size:9 final size:9
Alignment explanation
Indices: 23672828--23672896 Score: 59
Period size: 9 Copynumber: 7.3 Consensus size: 9
23672818 AACATTTTCA
*
23672828 TTTTTTTAT
1 TTTTTTTGT
*
23672837 TTTTTTTAT
1 TTTTTTTGT
*
23672846 ATTTTTTGT
1 TTTTTTTGT
23672855 TTTTTTTGT
1 TTTTTTTGT
*
23672864 TTGCTTTTGTT
1 TT-TTTTTG-T
23672875 TTTGGTTTTGT
1 TTT--TTTTGT
23672886 TTTTTTT-T
1 TTTTTTTGT
23672894 TTT
1 TTT
23672897 AACCAAAGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
8 4 0.08
9 30 0.59
10 5 0.10
11 7 0.14
12 5 0.10
ACGTcount: A:0.04, C:0.01, G:0.10, T:0.84
Consensus pattern (9 bp):
TTTTTTTGT
Found at i:23672876 original size:17 final size:16
Alignment explanation
Indices: 23672831--23672894 Score: 51
Period size: 16 Copynumber: 3.9 Consensus size: 16
23672821 ATTTTCATTT
* * *
23672831 TTTTATTTTTTTTATA
1 TTTTGTTTTTTTTTTG
23672847 TTTT-TTGTTTTTTTTG
1 TTTTGTT-TTTTTTTTG
*
23672863 -TTTGCTTTTGTTTTTGG
1 TTTTG-TTTT-TTTTTTG
23672880 TTTTGTTTTTTTTTT
1 TTTTGTTTTTTTTTT
23672895 TTAACCAAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
15 5 0.13
16 18 0.46
17 12 0.31
18 4 0.10
ACGTcount: A:0.05, C:0.02, G:0.11, T:0.83
Consensus pattern (16 bp):
TTTTGTTTTTTTTTTG
Found at i:23673071 original size:41 final size:41
Alignment explanation
Indices: 23672904--23673199 Score: 380
Period size: 41 Copynumber: 7.1 Consensus size: 41
23672894 TTTAACCAAA
* * * * *
23672904 GCTCGTCTAAACAAAGGCTCAACGACTTTGAAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-AAAAGTAAATT
* * * *
23672946 GCTCCTCTAAACAAAGGCTCAACGACTTTGAAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-AAAAGTAAATT
* * * *
23672988 GCTCATCTAAACAGAGGCTCAACGAGTTTG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
23673028 GCTCCTCTAAACAGAGGCACCACGACTTTTG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAGTAAATT
*
23673069 GCTCCTCTAAACAAAGGCACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
* *
23673110 GCTCTTCTAAACAGAGGCACCACAACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
23673151 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTG-AAAAGTAAATT
23673194 GCTCCT
1 GCTCCT
23673200 TGACAATCAT
Statistics
Matches: 234, Mismatches: 16, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
40 35 0.15
41 111 0.47
42 72 0.31
43 16 0.07
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.24
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
Found at i:23673145 original size:123 final size:124
Alignment explanation
Indices: 23672904--23673199 Score: 427
Period size: 123 Copynumber: 2.4 Consensus size: 124
23672894 TTTAACCAAA
* * * * *
23672904 GCTCGTCTAAACAAAGGCTCAACGAC-TTTGAAAAAATAAATTGCTCCTCTAAACAAAGGCTCAA
1 GCTCCTCTAAACAGAGGCACCACGACTTTTG-AAAAATAAATTGCTCCTCTAAACAAAGGCACAA
* * *
23672968 CGACTTTGAAAAAATAAATTGCTCATCTAAACAGAGGCTCAACGAGTTTGAAAGTAAATT
65 CGACTTTGAAAAAATAAATTGCTCATCTAAACAGAGGCACAACAACTTTGAAAGTAAATT
* *
23673028 GCTCCTCTAAACAGAGGCACCACGACTTTTG-AAAGTAAATTGCTCCTCTAAACAAAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAATAAATTGCTCCTCTAAACAAAGGCACAAC
* * *
23673092 GACTTTG-AAAAGTAAATTGCTCTTCTAAACAGAGGCACCACAACTTTGAAAAGTAAATT
66 GACTTTGAAAAAATAAATTGCTCATCTAAACAGAGGCACAACAACTTTG-AAAGTAAATT
23673151 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAAATAAATTGCTCCT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTG-AAAAATAAATTGCTCCT
23673200 TGACAATCAT
Statistics
Matches: 154, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
122 35 0.23
123 78 0.51
124 22 0.14
125 19 0.12
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.24
Consensus pattern (124 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAATAAATTGCTCCTCTAAACAAAGGCACAAC
GACTTTGAAAAAATAAATTGCTCATCTAAACAGAGGCACAACAACTTTGAAAGTAAATT
Found at i:23674231 original size:9 final size:9
Alignment explanation
Indices: 23674203--23674307 Score: 80
Period size: 9 Copynumber: 12.0 Consensus size: 9
23674193 CTTGAGTCCT
23674203 TTTTTTTCA
1 TTTTTTTCA
*
23674212 -CTTTTTC-
1 TTTTTTTCA
23674219 -TTTTTTCA
1 TTTTTTTCA
23674227 TTTTTTT-A
1 TTTTTTTCA
23674235 -TTTTTTCTA
1 TTTTTTTC-A
23674244 TTTTTTTTCA
1 -TTTTTTTCA
23674254 TTTTTTCTC-
1 TTTTTT-TCA
*
23674263 TTTTTTTTA
1 TTTTTTTCA
**
23674272 -TTTCATCA
1 TTTTTTTCA
*
23674280 TTTTTTTTCT
1 -TTTTTTTCA
23674290 TTTTTTTCA
1 TTTTTTTCA
23674299 TTTTTTTCA
1 TTTTTTTCA
23674308 AGCATAGTAT
Statistics
Matches: 76, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
7 12 0.16
8 13 0.17
9 36 0.47
10 8 0.11
11 7 0.09
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:23674232 original size:8 final size:8
Alignment explanation
Indices: 23674204--23674260 Score: 62
Period size: 8 Copynumber: 6.9 Consensus size: 8
23674194 TTGAGTCCTT
23674204 TTTTTTCA
1 TTTTTTCA
*
23674212 CTTTTTC-
1 TTTTTTCA
23674219 TTTTTTCA
1 TTTTTTCA
*
23674227 TTTTTTTA
1 TTTTTTCA
23674235 TTTTTTCTA
1 TTTTTTC-A
23674244 TTTTTTTTCA
1 --TTTTTTCA
23674254 TTTTTTC
1 TTTTTTC
23674261 TCTTTTTTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
7 6 0.15
8 26 0.63
9 1 0.02
10 1 0.02
11 7 0.17
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTTTCA
Found at i:23674267 original size:36 final size:35
Alignment explanation
Indices: 23674213--23674305 Score: 118
Period size: 35 Copynumber: 2.7 Consensus size: 35
23674203 TTTTTTTCAC
**
23674213 TTTTTC-TTTTT-TCATTTTTTTATTTTTTCTATTT
1 TTTTTCTTTTTTCTCATTTTTTTATTTCATC-ATTT
*
23674247 TTTTTCATTTTTTCTCTTTTTTTTATTTCATCATTT
1 TTTTTC-TTTTTTCTCATTTTTTTATTTCATCATTT
*
23674283 TTTTTCTTTTTTTTCATTTTTTT
1 TTTTTCTTTTTTCTCATTTTTTT
23674306 CAAGCATAGT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
34 6 0.12
35 15 0.29
36 15 0.29
37 15 0.29
ACGTcount: A:0.09, C:0.11, G:0.00, T:0.81
Consensus pattern (35 bp):
TTTTTCTTTTTTCTCATTTTTTTATTTCATCATTT
Found at i:23674283 original size:45 final size:41
Alignment explanation
Indices: 23674202--23674304 Score: 118
Period size: 45 Copynumber: 2.4 Consensus size: 41
23674192 CCTTGAGTCC
*
23674202 TTTTTTTTCACTTTTTCTTTTTTCATTTTTTTATTTTTTCTA
1 TTTTTTTTCATTTTTTCTTTTTT-ATTTTTTTATTTTTTCTA
* *
23674244 TTTTTTTTCATTTTTTCTCTTTTT-TTTATTTCATCATTTTTTTTC
1 TTTTTTTTCATTTTTTCT-TTTTTATTT-TTT--T-ATTTTTTCTA
23674289 TTTTTTTTCATTTTTT
1 TTTTTTTTCATTTTTT
23674305 TCAAGCATAG
Statistics
Matches: 53, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
41 3 0.06
42 20 0.38
43 5 0.09
44 1 0.02
45 24 0.45
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.80
Consensus pattern (41 bp):
TTTTTTTTCATTTTTTCTTTTTTATTTTTTTATTTTTTCTA
Found at i:23679214 original size:15 final size:16
Alignment explanation
Indices: 23679181--23679218 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
23679171 ATTATTTCAT
23679181 CTTTCT-CCTTCTTTAG
1 CTTTCTCCCTTC-TTAG
23679197 CTTTCTCCCTTC-TAG
1 CTTTCTCCCTTCTTAG
23679212 CTTTCTC
1 CTTTCTC
23679219 TAACATTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 10 0.48
16 6 0.29
17 5 0.24
ACGTcount: A:0.05, C:0.37, G:0.05, T:0.53
Consensus pattern (16 bp):
CTTTCTCCCTTCTTAG
Found at i:23683752 original size:26 final size:26
Alignment explanation
Indices: 23683716--23683765 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
23683706 GGCTTAGGCG
23683716 TACGGAGTTCATT-CCATGTCTAAGCA
1 TACGGAGTTCATTCCCA-GTCTAAGCA
23683742 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
23683766 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:23685993 original size:26 final size:26
Alignment explanation
Indices: 23685945--23685997 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23685935 GTTGACTTAG
* *
23685945 GCATACGGAGTTCATCCTGAGTCTAA
1 GCATAAGGAGTTCATCCTCAGTCTAA
23685971 GCATAAGGAGTTCATTCC-CAGTCTAA
1 GCATAAGGAGTTCA-TCCTCAGTCTAA
23685997 G
1 G
23685998 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCTCAGTCTAA
Found at i:23686324 original size:26 final size:25
Alignment explanation
Indices: 23686288--23686339 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
23686278 TTTGGCTTAG
23686288 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
*
23686314 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
23686339 G
1 G
23686340 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Done.