Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 236 of 402
Found at i:23686895 original size:368 final size:346
Alignment explanation
Indices: 23685894--23686920 Score: 1053
Period size: 368 Copynumber: 2.9 Consensus size: 346
23685884 TGGGCATCTT
** *
23685894 GCCTCTCCGGTCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGG-C-G-TGAGCGCCCGTACGCTCATTTCGTGGTTTGACTTAGGCATACGGAGTTCA
* * *
23685959 TCCTGAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCA
63 TCCT-AGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTGCAGCA
* * * * * *
23686024 ACAGGATCGATAGCACGTAGGGGGGATCGGGCCGATTCCC-AGCTTGCGCATTCTACCTCTCCGA
127 GCAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGA-CTTGCGTATTCTACCTCTCCGG
* * * * *
23686088 CCGGCTAAGTGCCCACACGCCCGTTTCGGTGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCT
191 CCGGCTGAGCGCCCGCACGCCCGTTTCTG-GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * * * * *
23686153 AAGCCCTAGCTGGATCGAGGGCTGTGGTAGTGGGACCGGCAGCACACAGAGGGGACCGGGCCGAT
255 AAGCCCCAACCGGACCGAGGGTTGTGGTAGCGGGACCGGCAGCACACAGAGGGGACCGGGCCGAT
23686218 CCCTGGCTTGCGCATTATGCCTCTCCG
320 CCCTGGCTTGCGCATTATGCCTCTCCG
* * * *
23686245 G---C-CCGGC-TGAGTGCCCGTACACTCGTTTCGTGGTTTGGCTTAGGCATACGGAGTTCATTC
1 GCCTCTCCGGCGTGAGCGCCCGTACGCTCATTTCGTGGTTTGACTTAGGCATACGGAGTTCA-TC
* * *
23686305 C-ATGTCTAAGCATATGGAGTTCATT-CCAGTCTAAGATCGGACCAGACCGAGGGTTGTGACAGT
65 CTA-GTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA-----G-G--A-T
* ** * * * *
23686368 AGGTCCAGCAGCAGGATCGGCAGCATGCAGAGGGTGACCGGGCCGATCCTCGACTTGCATATTCT
120 ---TGCAGCAGCAGGATCGATAGCACGCAG-GGGGGACCGGGCCGATCCCCGACTTGCGTATTCT
* * * * * * *
23686433 GCCTCTCCGGTCGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
181 ACCTCTCCGGCCGGCTGAGCGCCCGCACGCCCGTTTC-TGGGTTGGCTTAGGCATAGGGAGTTCA
*
23686498 TTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGCAGGACCAGCGACAGGATCGGTAAC
245 TTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGCGGGACC-G-G-CA-G--C----AC
* *
23686563 ACGTAGAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCAGGCCG
300 AC--AGA-GGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCT----CCG
*
23686617 GCCTCTCCGGCCAGTTGAGCGCCCGTACGCTCATTTCGTGGTTTGACTTAGGCATATGGAGTTCA
1 GCCTCTCCGG-C-G-TGAGCGCCCGTACGCTCATTTCGTGGTTTGACTTAGGCATACGGAGTTCA
* *
23686682 TCCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTGCAGCA
63 T-CCTAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTGCAGCA
* * * *
23686747 GTAGGATCGATAGCACGGAGGGGGGACCGAGCCGATCCCCGACTTGCGTATTCTACCTCTCTGGC
127 GCAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGTATTCTACCTCTCCGGC
* * *
23686812 CGGCTGAGCGCCCGCACACCCATTTCATGGGTTGGCTTACGCATAGGGAGTTCATTCCATGTCTA
192 CGGCTGAGCGCCCGCACGCCCGTTTC-TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * * *
23686877 AGCCCCAATCGAACCGAGGGTTGTGGCAGCGGGACCGGTAGCAC
256 AGCCCCAACCGGACCGAGGGTTGTGGTAGCGGGACCGGCAGCAC
23686921 GTAGAAGGGG
Statistics
Matches: 548, Mismatches: 83, Indels: 83
0.77 0.12 0.12
Matches are distributed among these distances:
342 23 0.04
343 64 0.12
344 3 0.01
346 1 0.00
347 5 0.01
348 2 0.00
351 2 0.00
354 20 0.04
355 116 0.21
356 3 0.01
357 1 0.00
358 4 0.01
359 1 0.00
361 1 0.00
362 1 0.00
364 1 0.00
365 5 0.01
366 1 0.00
367 4 0.01
368 163 0.30
369 21 0.04
372 5 0.01
373 1 0.00
375 2 0.00
376 5 0.01
377 1 0.00
379 1 0.00
380 67 0.12
381 24 0.04
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (346 bp):
GCCTCTCCGGCGTGAGCGCCCGTACGCTCATTTCGTGGTTTGACTTAGGCATACGGAGTTCATCC
TAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTGCAGCAGCAG
GATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGTATTCTACCTCTCCGGCCGGC
TGAGCGCCCGCACGCCCGTTTCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
CAACCGGACCGAGGGTTGTGGTAGCGGGACCGGCAGCACACAGAGGGGACCGGGCCGATCCCTGG
CTTGCGCATTATGCCTCTCCG
Found at i:23695645 original size:26 final size:26
Alignment explanation
Indices: 23695616--23695668 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23695606 CCGATCCAAT
23695616 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
23695642 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23695668 C
1 C
23695669 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23696403 original size:158 final size:158
Alignment explanation
Indices: 23696020--23696520 Score: 408
Period size: 158 Copynumber: 3.2 Consensus size: 158
23696010 AACTCCTTAT
* * * *
23696020 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAG
* * ** *
23696085 CC-AGCTGGAGAGGCAGAATGCGTAAGCCGAGGACTGGCCCGGTCCCCCCTATGTGCTATCGATC
66 CCGA-CTGGAGAGGCAAAATGCGTAAGCCGAGGACCGGCCCGGTCCCCCCTACATGCTACCGATC
* *
23696149 CTGCTACCGCAACCCTCGATCCAGTCCAA
130 CCGCTACCGCAACCCTCGATCCAGGCCAA
* * * ** *
23696178 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGAATTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCA
* * * *
23696242 GCCGACTGGAGAGGCATAATGCGTAAGTCGAGGACCGGCCCGGTCCCCCTCTACATGCTGCCGGT
65 GCCGACTGGAGAGGCAAAATGCGTAAGCCGAGGACCGGCCCGGTCCCCC-CTACATGCTACCGAT
** * * * *
23696307 CCCGC-AGTGACAACCCAT-GTTTC-GGCTAGG
129 CCCGCTACCG-CAACCC-TCGATCCAGGCCA-A
* * * * *
23696337 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAA-CCACGAAATGGGCGCGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAG
* * * * ** * * * *** *
23696401 CCGGCCGGAGAGACAAAATGCGCAAATC-AGGGATCGACCCGATCCCCCCTGGGTGCTATCGATC
66 CCGACTGGAGAGGCAAAATGCGTAAGCCGA-GGACCGGCCCGGTCCCCCCTACATGCTACCGATC
* ** *
23696465 CTGCT-GTGCAACCCTTGATCC-GGTCCAA
130 CCGCTACCGCAACCCTCGATCCAGG-CCAA
* *
23696493 TCTTAGACAGGGAATGAACTCCGTATGC
1 GCTTAGACATGGAATGAACTCCGTATGC
23696521 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 61, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
155 1 0.00
156 35 0.13
157 20 0.07
158 159 0.59
159 54 0.20
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAG
CCGACTGGAGAGGCAAAATGCGTAAGCCGAGGACCGGCCCGGTCCCCCCTACATGCTACCGATCC
CGCTACCGCAACCCTCGATCCAGGCCAA
Found at i:23696523 original size:26 final size:26
Alignment explanation
Indices: 23696494--23696546 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23696484 CCGGTCCAAT
23696494 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
23696520 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
23696546 C
1 C
23696547 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:23697262 original size:26 final size:25
Alignment explanation
Indices: 23697217--23697268 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
23697207 GGCTCAAACT
* * *
23697217 CTTAGACTTGAATGAACTCCGTATG
1 CTTAGACTGGAACGAACTCCATATG
23697242 CTTAGACATGGAACGAACTCCATATG
1 CTTAGAC-TGGAACGAACTCCATATG
23697268 C
1 C
23697269 CTAAGACAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAACGAACTCCATATG
Found at i:23697588 original size:26 final size:26
Alignment explanation
Indices: 23697559--23697611 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23697549 CCGATTTGAT
23697559 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
23697585 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
23697611 C
1 C
23697612 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:23699731 original size:26 final size:26
Alignment explanation
Indices: 23699702--23699754 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23699692 CCGATCCAAT
23699702 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
23699728 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23699754 C
1 C
23699755 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23700326 original size:159 final size:157
Alignment explanation
Indices: 23700041--23700370 Score: 455
Period size: 159 Copynumber: 2.1 Consensus size: 157
23700031 TACCGGTCTT
* * *** * *
23700041 GCTACCACAACCATTGGTCCGGTTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAC
1 GCTACCACAACCCTTCGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * *
23700106 CCACGAAACGAGCGTGCGGGTGCTCAATCGACCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGC
66 CCACGAAACGAGCATGCGGGTGCTCAACCGACCGGAGAGGCAGAATGCGTAAGTCGAGGATCGAC
*
23700171 CCGGTCCCCCTTTGCGTGCTGTCGGTCCC
131 CCGGTCCCCC--TGCGTGCTGTCGATCCC
23700200 GCTACCACAACCCTTCGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTACCACAACCCTTCGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * *
23700265 CCATGAAAC-AGGCATGTGGGTGCTCAGCCGACCGGAGAGGTAGAATGCGTAAGTCGCGGATCGA
66 CCACGAAACGA-GCATGCGGGTGCTCAACCGACCGGAGAGGCAGAATGCGTAAGTCGAGGATCGA
* *
23700329 CCTGGTCCCCCTGCGTGCTGTCGATCCT
130 CCCGGTCCCCCTGCGTGCTGTCGATCCC
*
23700357 GCTACCGCAACCCT
1 GCTACCACAACCCT
23700371 CAGTCTGGTC
Statistics
Matches: 151, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
157 28 0.19
158 1 0.01
159 122 0.81
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTACCACAACCCTTCGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGAGCATGCGGGTGCTCAACCGACCGGAGAGGCAGAATGCGTAAGTCGAGGATCGAC
CCGGTCCCCCTGCGTGCTGTCGATCCC
Found at i:23700413 original size:25 final size:26
Alignment explanation
Indices: 23700385--23700436 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23700375 CTGGTCCGAT
23700385 CTTAGACTA-GGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
23700410 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
23700436 C
1 C
23700437 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 9 0.35
26 17 0.65
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:23700630 original size:26 final size:26
Alignment explanation
Indices: 23700593--23700643 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23700583 CGATTTGATC
23700593 TTAGACTAGGAATGAACTCCGTATGG
1 TTAGACTAGGAATGAACTCCGTATGG
*
23700619 TTAGAC-ATGGAATGAACTCCTTATG
1 TTAGACTA-GGAATGAACTCCGTATG
23700644 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGG
Found at i:23700888 original size:159 final size:154
Alignment explanation
Indices: 23700619--23701114 Score: 406
Period size: 154 Copynumber: 3.2 Consensus size: 154
23700609 CTCCGTATGG
* *
23700619 TTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTCAGC
1 TTAGACATGGAATGAACT-CTGTATGCCT-AGCCAACCCATGAAATGAGCGTGC-GG-GCT-AGC
* ** * *
23700683 CGACCGGAGAGGCAGAATGTATAAGCCTGGGA-CAGGCCCAGTCCCCTCCTACGTGCTGTCGATC
61 CGATCGGAGAGGCAGAATGCGTAAGCCGGGGATC-GG-CCGGTCCCCTCCTACGTGCTGTCGATC
* *
23700747 CTACTACCGTAACCCTCGGTCTGGTCTGATC
124 CTGCTACCGTAACCCTCGGTCTAGTCTGATC
* * *
23700778 TTAGAC-TAGGAATGAACTCTGTATGCCTATGTCAACCCATGAAATGAGCATTCGGGCACTGAGC
1 TTAGACAT-GGAATGAACTCTGTATGCCTA-GCCAACCCATGAAATGAGCGTGCGGG--CT-AGC
* *
23700842 C-ATCGGAGAGGCATAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCTCTGTATAC-TGCTG--G
61 CGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGC-CGGT-CCCCTC---CTACGTGCTGTCG
* * * ** * * **
23700903 -TCCCGCTGCCAG-AACACTCAAT-TCGACTAGGGC
121 ATCCTGCTACC-GTAACCCTCGGTCTAGTCT-GATC
** * * *
23700936 TT-GACATGGAATGAACTCCCTATGCCTGAGGCAACCCACGAAATGGGCGTGCGGGC-AGCCGAT
1 TTAGACATGGAATGAACTCTGTATGCCT-AGCCAACCCATGAAATGAGCGTGCGGGCTAGCCGAT
* * *
23700999 CGGAGAGGCAGAATTCGCAAGCCGGGGATCGACCTGGTCCCC-CCTACGTGCTGTCGATCCTGCT
65 CGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCC-GGTCCCCTCCTACGTGCTGTCGATCCTGCT
* *
23701063 ACCGTAACCATCGGTCCAGTCTGATC
129 ACCGTAACCCTCGGTCTAGTCTGATC
*
23701089 TTAGACAGGGAATGAACTCTGTATGC
1 TTAGACATGGAATGAACTCTGTATGC
23701115 TTAGACTAGG
Statistics
Matches: 264, Mismatches: 49, Indels: 53
0.72 0.13 0.14
Matches are distributed among these distances:
149 3 0.01
150 5 0.02
152 3 0.01
153 27 0.10
154 57 0.22
155 1 0.00
157 48 0.18
158 56 0.21
159 56 0.21
161 5 0.02
162 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (154 bp):
TTAGACATGGAATGAACTCTGTATGCCTAGCCAACCCATGAAATGAGCGTGCGGGCTAGCCGATC
GGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCGGTCCCCTCCTACGTGCTGTCGATCCTGCTAC
CGTAACCCTCGGTCTAGTCTGATC
Found at i:23701117 original size:26 final size:26
Alignment explanation
Indices: 23701088--23701140 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23701078 CCAGTCTGAT
23701088 CTTAGAC-AGGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCTGTATG
23701114 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCTGTATG
23701140 C
1 C
23701141 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCTGTATG
Found at i:23702190 original size:26 final size:26
Alignment explanation
Indices: 23702152--23702204 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23702142 TCGGTTCGAT
23702152 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
23702178 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
23702204 C
1 C
23702205 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23702205 original size:697 final size:698
Alignment explanation
Indices: 23701435--23702723 Score: 1673
Period size: 697 Copynumber: 1.8 Consensus size: 698
23701425 CTACTGCCGC
* * ***
23701435 AACCCTCGGTCTGGTTTGATCTTAGATTGGGAATGAACTGTGCATGCTTAGACATGGAATGAACT
1 AACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCACATGCTTAGACATGGAATGAACT
* * * * *
23701500 CCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCATTCTGTCGACCAGAGAGGCAGAATG
66 CCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCATTCAGCCGACCAGAGAGGCAGAATA
* * * * * *
23701565 CGTAAGCT-GGGGACCGGCTCGGTCCCCCTTGCATGTTGTCGATCCTACTACT-GCAACCCTCGG
131 CGTAA-CTCGGAGACCGACCCGGTCCCCCCTGCATGTTGTCGATCCTACT-CTCACAACCCTCAG
* * *
23701628 TTCGA-TCTGATCTTAGACT-GGAAATGAACTCTGTATGCCTAAGCCAACGCATGAAATGAGCGT
194 -TCGAGTCCGATCTTAGACTAGG-AATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGT
* * * * * * * *
23701691 GCGGGCGCTGCA-CCGACCGGAGAGGCATAATGCGCCAGTCGGGGATC-AGTCCGATCCCCCTCT
257 GCAGGCACTG-AGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGACT-CGATCCCCCTCA
* * * *
23701754 GCGTGCTGCCGGTCCCGCTGGCACAACCCTCAGTTCGA-CTAGGGCTTAGACATGG-ATGAACTC
320 ACATGCTGCCGGTCCCGCTGCCACAACCCTCAG-TCCATCTAGGGCTTAGACATGGAATGAACTC
* * * **
23701817 CCTATGCATAAGCTAAAACATGAAATGGGCAT-ACGGGCGCTCAGTCGGTTGGAGAGGCAGAATG
384 CCTATGCATAAGCCAAAACATGAAACGGGCATGA-GGGCACTCAGTCGACTGGAGAGGCAGAATG
* * * * * * *
23701881 CGTAAGCCGGGGATCAGCTCGATCCCCCTTACGTGCAACCTATCCTATTACCACAACCCTCGGT-
448 CGCAAGCCGAGGACCAGCTCGATCCCCCCTACGTGCAACCGATCCTACTACCACAACCCTCGATC
** *
23701945 CTGATCTGATCTTAGAATGGGAATGAACTCCATATGCTCAGACTGGGGATGAACTCTGTATGCCT
513 CTG-TCCAATCTTAGAATGGGAATGAACTCCATATGCTCAGACTGGGGATGAACTCCGTATGCCT
23702010 AAGTCAAACCACGAAATGAGCGTGCGGGTGCTCAACCGACTGGAAAGGCCGATCGGGGAGGCAGA
577 AAGTCAAACCACGAAATGAGCGTGCGGGTGCTCAACCGACTGGAAAGGCCGATCGGGGAGGCAGA
23702075 ATGCACAAGCTGGGGATCGGGTCGGTCCCCCCTACGTGCTGCCGATCCTGCTGCTGT
642 ATGCACAAGCTGGGGATCGGGTCGGTCCCCCCTACGTGCTGCCGATCCTGCTGCTGT
*
23702132 AACCCTCGGT-TCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAAC
1 AACCCTCGGTCT-GGTTCGATCTTAGACTGGGAATGAACTCCACATGCTTAGACATGGAATGAAC
* * ** *
23702196 TCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTCAGCCTACTGGGGAGGCAGAAT
65 TCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCATTCAGCCGACCAGAGAGGCAGAAT
*
23702261 ACGTAACTCGGAGACCGACCCGGTCCCCCCTGCATGTTGTCGATCCTACTGTCACAACCCTCAGT
130 ACGTAACTCGGAGACCGACCCGGTCCCCCCTGCATGTTGTCGATCCTACTCTCACAACCCTCAGT
* * * *
23702326 CTAGTCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGGAATGAGCGTTCA
195 CGAGTCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCA
* *
23702391 GGCACTGAGCTGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGACTCGATCCCCCTCAACATG
260 GGCACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGACTCGATCCCCCTCAACATG
* * *
23702456 CTGCCGGTCCTGCTGCCACAACCCTCAGTCCATTTGGGGCTTAGACATGGAATGAACTCCCTATG
325 CTGCCGGTCCCGCTGCCACAACCCTCAGTCCATCTAGGGCTTAGACATGGAATGAACTCCCTATG
* **
23702521 CCTAAGCCAACCCATGAAACGGGCATGAGGGCACTCAGTCGACTGGAGAGGCAGAATGCGCAAGC
390 CATAAGCCAAAACATGAAACGGGCATGAGGGCACTCAGTCGACTGGAGAGGCAGAATGCGCAAGC
* * * * * * * ** ** *
23702586 TGAGGACCGGCTCGGTCCCCCCTGCGTGCTATCGATCCTGCTGTCGTAACCTTCGATCCTGTCCA
455 CGAGGACCAGCTCGATCCCCCCTACGTGCAACCGATCCTACTACCACAACCCTCGATCCTGTCCA
* * * * *
23702651 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATTAACTCCGTATGCCTAAGTCAAC
520 ATCTTAGAATGGGAATGAACTCCATATGCTCAGACTGGGGATGAACTCCGTATGCCTAAGTCAAA
23702716 CCACGAAA
585 CCACGAAA
23702724 CAAGCATGCG
Statistics
Matches: 499, Mismatches: 82, Indels: 21
0.83 0.14 0.03
Matches are distributed among these distances:
696 11 0.02
697 304 0.61
698 180 0.36
699 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (698 bp):
AACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCACATGCTTAGACATGGAATGAACT
CCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCATTCAGCCGACCAGAGAGGCAGAATA
CGTAACTCGGAGACCGACCCGGTCCCCCCTGCATGTTGTCGATCCTACTCTCACAACCCTCAGTC
GAGTCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAG
GCACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGACTCGATCCCCCTCAACATGC
TGCCGGTCCCGCTGCCACAACCCTCAGTCCATCTAGGGCTTAGACATGGAATGAACTCCCTATGC
ATAAGCCAAAACATGAAACGGGCATGAGGGCACTCAGTCGACTGGAGAGGCAGAATGCGCAAGCC
GAGGACCAGCTCGATCCCCCCTACGTGCAACCGATCCTACTACCACAACCCTCGATCCTGTCCAA
TCTTAGAATGGGAATGAACTCCATATGCTCAGACTGGGGATGAACTCCGTATGCCTAAGTCAAAC
CACGAAATGAGCGTGCGGGTGCTCAACCGACTGGAAAGGCCGATCGGGGAGGCAGAATGCACAAG
CTGGGGATCGGGTCGGTCCCCCCTACGTGCTGCCGATCCTGCTGCTGT
Found at i:23702605 original size:159 final size:157
Alignment explanation
Indices: 23702177--23702607 Score: 386
Period size: 159 Copynumber: 2.7 Consensus size: 157
23702167 AACTCCATAT
* * **
23702177 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGAGGGCACTCAG
* * * * * ** * *
23702242 CCTACTGGGGAGGCAGAATACGTAA-CTCG-GAGACCGACCCGGTCCCCCCTGCATGTTGTCGAT
66 -CGACTGGAGAGGCAGAATGCGCAAGCT-GAG-GACCGACTCGGTCCCCCCAACATGCTGCCGAT
* *
23702305 CCTACTGTCACAACCCTCAGTCTAGTCCGA
128 CCTACTGCCACAACCCTCAGTCCAGTCCGA
* * * * * * * * *
23702335 TCTTAGAC-TAGGAATGAACTCTGTATGCCTAAGTCAACCCACGGAATGAGCGTTCA-GGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGC-ATGAGGGCACTC
* * * * * * *
23702398 AGCTGGCCGAAGAGGCATAATGCGCAAGC-CAGGGATCGACTCGATCCCCCTCAACATGCTGCCG
64 AGC-GACTGGAGAGGCAGAATGCGCAAGCTGA-GGACCGACTCGGTCCCCC-CAACATGCTGCCG
* * * ** *
23702462 GTCCTGCTGCCACAACCCTCAGTCCATTTGGG
126 ATCCTACTGCCACAACCCTCAGTCCAGTCCGA
* *
23702494 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGAGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGAGGGCACTCAG
*
23702559 TCGACTGGAGAGGCAGAATGCGCAAGCTGAGGACCGGCTCGGTCCCCCC
66 -CGACTGGAGAGGCAGAATGCGCAAGCTGAGGACCGACTCGGTCCCCCC
23702608 TGCGTGCTAT
Statistics
Matches: 207, Mismatches: 55, Indels: 22
0.73 0.19 0.08
Matches are distributed among these distances:
157 2 0.01
158 81 0.39
159 121 0.58
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGAGGGCACTCAG
CGACTGGAGAGGCAGAATGCGCAAGCTGAGGACCGACTCGGTCCCCCCAACATGCTGCCGATCCT
ACTGCCACAACCCTCAGTCCAGTCCGA
Found at i:23702689 original size:26 final size:26
Alignment explanation
Indices: 23702653--23702705 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23702643 CCTGTCCAAT
23702653 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
23702679 CTTAGACTGGGGATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23702705 C
1 C
23702706 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23703307 original size:26 final size:26
Alignment explanation
Indices: 23703257--23703309 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23703247 GGCTCAAACT
**
23703257 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23703283 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23703309 C
1 C
23703310 CAAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23703571 original size:158 final size:158
Alignment explanation
Indices: 23703282--23703585 Score: 368
Period size: 158 Copynumber: 1.9 Consensus size: 158
23703272 AACTTTGTAT
**
23703282 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCGTGCGAGACTCAGC
1 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACAAAACGAGCGTGCGAGACTCAGC
* * * * *
23703347 CGACAGGAGAGGTAGAATGCACAAGTCAGTGATCGACCCGATCCACCTCTGTGTGCTGCCAGTCC
66 CGACAGGAGAGGCAGAATACACAAGTCAGTGATCGACCCGATCCACCCCTGCGTGCTACCAGTCC
23703412 TGCTACCACAACCCTCATTCCGACTAGG
131 TGCTACCACAACCCTCATTCCGACTAGG
* * * * *
23703440 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCCCAAAACGGGCATGTGGGCG-CTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACAAAACGAGC--GTGCGAGACTCA
* * *
23703504 GCCGACTGGAGAGGCAGAATACCCAAG-CTACG-GATC-AGCCTGATCC-CCCCTGCGTGCTACC
64 GCCGACAGGAGAGGCAGAATACACAAGTC-A-GTGATCGA-CCCGATCCACCCCTGCGTGCTACC
*
23703565 -GATCCTGCTACCGCAACCCTC
126 AG-TCCTGCTACCACAACCCTC
23703586 GGTCTGATCT
Statistics
Matches: 124, Mismatches: 16, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
157 1 0.01
158 78 0.63
159 39 0.31
160 6 0.05
ACGTcount: A:0.26, C:0.33, G:0.24, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACAAAACGAGCGTGCGAGACTCAGC
CGACAGGAGAGGCAGAATACACAAGTCAGTGATCGACCCGATCCACCCCTGCGTGCTACCAGTCC
TGCTACCACAACCCTCATTCCGACTAGG
Found at i:23703603 original size:158 final size:158
Alignment explanation
Indices: 23703282--23703625 Score: 362
Period size: 158 Copynumber: 2.2 Consensus size: 158
23703272 AACTTTGTAT
**
23703282 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCGTGCGAGACTCAGC
1 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACAAAACGAGCGTGCGAGACTCAGC
* * * * *
23703347 CGACAGGAGAGGTAGAATGCACAAGTCAGTGATCGACCCGATCCACCTCTGTGTGCTGCCAGTCC
66 CGACAGGAGAGGCAGAATACACAAGTCAGTGATCGACCCGATCCACCCCTGCGTGCTACCAGTCC
* *
23703412 TGCTACCACAACCCTCATTCCGACTAGG
131 TGCTACCACAACCCTCAGTCCGACTAGA
* * * * *
23703440 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCCCAAAACGGGCATGTGGGCG-CTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACAAAACGAGC--GTGCGAGACTCA
* * *
23703504 GCCGACTGGAGAGGCAGAATACCCAAG-CTACG-GATC-AGCCTGATCC-CCCCTGCGTGCTACC
64 GCCGACAGGAGAGGCAGAATACACAAGTC-A-GTGATCGA-CCCGATCCACCCCTGCGTGCTACC
* * *
23703565 -GATCCTGCTACCGCAACCCTCGGTCTGATCT-GA
126 AG-TCCTGCTACCACAACCCTCAGTCCGA-CTAGA
* *
23703598 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
23703626 TTAGACTAGG
Statistics
Matches: 156, Mismatches: 22, Indels: 16
0.80 0.11 0.08
Matches are distributed among these distances:
157 2 0.01
158 107 0.69
159 41 0.26
160 6 0.04
ACGTcount: A:0.26, C:0.31, G:0.24, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACAAAACGAGCGTGCGAGACTCAGC
CGACAGGAGAGGCAGAATACACAAGTCAGTGATCGACCCGATCCACCCCTGCGTGCTACCAGTCC
TGCTACCACAACCCTCAGTCCGACTAGA
Found at i:23703640 original size:26 final size:25
Alignment explanation
Indices: 23703599--23703650 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
23703589 CTGATCTGAT
23703599 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAAC-CCATATG
*
23703625 CTTAGACTAGGG-ATGAACCCGTATG
1 CTTAGACT-GGGAATGAACCCATATG
23703650 C
1 C
23703651 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 7 0.29
26 14 0.58
27 3 0.12
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACCCATATG
Found at i:23703824 original size:26 final size:26
Alignment explanation
Indices: 23703795--23703845 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
23703785 TCGATCCGAT
23703795 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
23703821 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
23703846 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:23704256 original size:58 final size:58
Alignment explanation
Indices: 23704161--23704286 Score: 137
Period size: 58 Copynumber: 2.2 Consensus size: 58
23704151 TGAACTCCGT
* * *
23704161 ATGCCTAAGCGAACCCATGAAACGAGCGTGCGAGCGCTCAACCGATCGGAGAGGCAGA
1 ATGCCTAAGCGAACCCACGAAACGAGCATGCGAGCGCTCAACCGACCGGAGAGGCAGA
* * * * * * *
23704219 ATGCCTAAGTC-AACCCACGAAATGAGCATTCGGGCGCTGAGCCGGCCGGAGAGGCATA
1 ATGCCTAAG-CGAACCCACGAAACGAGCATGCGAGCGCTCAACCGACCGGAGAGGCAGA
*
23704277 ATGCGTAAGC
1 ATGCCTAAGC
23704287 TAGGGATCGA
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
57 1 0.02
58 54 0.96
59 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.31, T:0.13
Consensus pattern (58 bp):
ATGCCTAAGCGAACCCACGAAACGAGCATGCGAGCGCTCAACCGACCGGAGAGGCAGA
Found at i:23704383 original size:217 final size:217
Alignment explanation
Indices: 23704002--23704439 Score: 533
Period size: 217 Copynumber: 2.0 Consensus size: 217
23703992 TGAACTCCGT
* * * * * *
23704002 ATGCCTATGTTAACCCATGAAACGAGCATTCGAGGGCTGAGCCGATCGTAGCGGCATAATGCACA
1 ATGCCTAAGTCAACCCACGAAACGAGCATTCGAGGGCTGAGCCGACCGGAGAGGCATAATGCACA
* ** * * ** ***
23704067 AGCCAGGGATCGACCCGACCCCTCTCTGTGTGTTGCCGGTCCTACTGCCATAACTTTCAGTTTGA
66 AGCCAGGGATCGACCCAACCCCTCTCTGCATGTTGCCGGTCCCACTGCCACAACCCTCAGTCCAA
* * * *
23704132 CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCGAACCCAT-GAAACGAGCGTGCGAGC
131 CTAGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATAG-AACGAGCGTGCGAGC
* *
23704196 GCTCAACCGATCGGAGAGGCAGA
195 GCTCAACAGACCGGAGAGGCAGA
* * **
23704219 ATGCCTAAGTCAACCCACGAAATGAGCATTCG-GGCGCTGAGCCGGCCGGAGAGGCATAATGCGT
1 ATGCCTAAGTCAACCCACGAAACGAGCATTCGAGG-GCTGAGCCGACCGGAGAGGCATAATGCAC
*
23704283 AAGCTAGGGATCGACCCAATCCCC-CTCTGCATGTTGCCGGTCCCACTGCCACAACCCTC-GATC
65 AAGCCAGGGATCGACCCAA-CCCCTCTCTGCATGTTGCCGGTCCCACTGCCACAACCCTCAG-TC
* *
23704346 CAACTAGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATAGAACGGGCGTGCGG
128 CAACTAGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATAGAACGAGCGTGCGA
* *
23704411 GCGCTTAGCAGACCGGAGAGGCAGA
193 GCGCTCAACAGACCGGAGAGGCAGA
23704436 ATGC
1 ATGC
23704440 GCAAGCTGGG
Statistics
Matches: 186, Mismatches: 31, Indels: 8
0.83 0.14 0.04
Matches are distributed among these distances:
216 3 0.02
217 178 0.96
218 5 0.03
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.18
Consensus pattern (217 bp):
ATGCCTAAGTCAACCCACGAAACGAGCATTCGAGGGCTGAGCCGACCGGAGAGGCATAATGCACA
AGCCAGGGATCGACCCAACCCCTCTCTGCATGTTGCCGGTCCCACTGCCACAACCCTCAGTCCAA
CTAGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATAGAACGAGCGTGCGAGCG
CTCAACAGACCGGAGAGGCAGA
Found at i:23704713 original size:184 final size:184
Alignment explanation
Indices: 23704511--23704907 Score: 476
Period size: 184 Copynumber: 2.2 Consensus size: 184
23704501 GTCTGATTCA
* * * *
23704511 ATCTTAGACTGTGAATGAACTTCGTATGCTTAGAC-TGGGATGAACTCCATAAGCCTAAGTCAAC
1 ATCTAAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCATAAGCCTAAGCCAAC
* * *** * *
23704575 CGACGAAACGAGTGTGGCGGGCGCTTAGTCGGTCAGAGAGGCAGAATGCGTAAGCTGAAGATCGG
66 CCACGAAACGAGTGT-GCGGGCGCTCAGTCAACCAGAGAGGCAGAATGCGCAAGCCGAAGATCGG
* * * * * *
23704640 CCCGATCCCCCCTGCGTGCT-ACAGATCCTGCCATCGCAACCCTCGGTCCGATCTG
130 CCCAATCCCCCCTACATGCTGAC-GATCCTACCATCACAACCCTCAGTCCGATCTG
* * *
23704695 ATCTCAA-ACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 ATCT-AAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCATAAGCCTAAGCCAA
* *
23704759 CCCATGAAACGAGTGTGCGGGTGCTCAGTCAACCAGAGAGGCAGAATGCGCAAGCCGAAGATCGG
65 CCCACGAAACGAGTGTGCGGGCGCTCAGTCAACCAGAGAGGCAGAATGCGCAAGCCGAAGATCGG
* * * * * * *
23704824 CTCAATCCCTCTTACATGCTGTCGATCCTACTATCACAACCTTCAGTCCGGTCTG
130 CCCAATCCCCCCTACATGCTGACGATCCTACCATCACAACCCTCAGTCCGATCTG
*
23704879 ATCTAAGATTGGGAATGAACTTCGTATGC
1 ATCTAAGACTGGGAATGAACTTCGTATGC
23704908 CTAAGTCAAC
Statistics
Matches: 178, Mismatches: 31, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
183 2 0.01
184 136 0.76
185 40 0.22
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.22
Consensus pattern (184 bp):
ATCTAAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCATAAGCCTAAGCCAAC
CCACGAAACGAGTGTGCGGGCGCTCAGTCAACCAGAGAGGCAGAATGCGCAAGCCGAAGATCGGC
CCAATCCCCCCTACATGCTGACGATCCTACCATCACAACCCTCAGTCCGATCTG
Found at i:23705226 original size:26 final size:26
Alignment explanation
Indices: 23705197--23705249 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23705187 CCGATCCGAT
23705197 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
23705223 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
23705249 C
1 C
23705250 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:23705607 original size:26 final size:26
Alignment explanation
Indices: 23705578--23705630 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23705568 CCTGTCCGAT
23705578 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
23705604 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23705630 C
1 C
23705631 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23705959 original size:159 final size:158
Alignment explanation
Indices: 23705603--23706032 Score: 420
Period size: 159 Copynumber: 2.7 Consensus size: 158
23705593 AACTCCGTAT
* * *
23705603 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGGTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAGGCGGTCAG
** * *
23705668 CCGATTGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCAGTCCCCCTTTCATGCTATCGATCC
66 CCGACCGGAGAGGCAGAATGCGAAAGCCGGGGATCGACCCAGGCCCCCTTTCATGCTATCGATCC
** *
23705733 TGCTGTCACAACCCTCGATCTGATCCGA
131 CACTGTCACAACCCTAGATCTGATCCGA
* * * * *
23705761 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAGGCGGTCA
* * * * * * * *
23705825 GCCGACCGGAGAGGCATAATGCGAAAGCCGGGGATTGGCGC-GGCCCCTCTTTGCGTGTTGTCGG
65 GCCGACCGGAGAGGCAGAATGCGAAAGCCGGGGATCGACCCAGGCCCC-CTTT-CATGCTATCGA
* * * *
23705889 TCCCACTG-CTATAACCCTAGGTCTGA-CTGGG
128 TCCCACTGTC-ACAACCCTAGATCTGATC-CGA
* * ** **
23705920 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAGGCGGTCAG
* * * * * *
23705985 TCGGCCGGAGAGGCAGAATGTGCAAGTCAGGGATCGACCC-GGTCCCCC
66 CCGACCGGAGAGGCAGAATGCGAAAGCCGGGGATCGACCCAGG-CCCCC
23706033 CTGCGTGCTG
Statistics
Matches: 220, Mismatches: 45, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
157 6 0.03
158 94 0.43
159 115 0.52
160 5 0.02
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAGGCGGTCAG
CCGACCGGAGAGGCAGAATGCGAAAGCCGGGGATCGACCCAGGCCCCCTTTCATGCTATCGATCC
CACTGTCACAACCCTAGATCTGATCCGA
Found at i:23707333 original size:171 final size:171
Alignment explanation
Indices: 23707022--23707500 Score: 489
Period size: 171 Copynumber: 2.8 Consensus size: 171
23707012 AACTCCGTAT
* * * *
23707022 GCTTAGACTAGGG-TTGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTTA
1 GCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTA
* * * * * * * * * *
23707086 GCCGGTCGGGGAGGCATAATGCACAAGCCAGAGATCAGCCCGATCCCCCTCTGTGTGCTGTTGAT
65 GCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGAT
* * * * * *
23707151 CCCGTTGCTGGTCCTGCTGCCACAACTCTCAATTC-GGCTGGG
130 CCCGCTGCTGGTCCTACTGCCACAACCCTCAATCCAAGCT-GA
* * * * *
23707193 GCTTAGCCAT-GGAATGAACTCCGTATGCCTAAGCCTACCCATGAAACGAACGTGCGGGTGCTTA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTA
* * *
23707257 GCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCTGAT-CCCCTCCTGCGTGCTATCGA
65 GCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCT-CTGCGTGCTATCGA
** ** ** *
23707321 TCTTGCTGCTGGTCCTACTGCCGTAACCCTCGGTCCAATCTGA
129 TCCCGCTGCTGGTCCTACTGCCACAACCCTCAATCCAAGCTGA
* * *
23707364 TCTTAGACTGGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
* * * * * *
23707429 CCAATCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCTCTGCATGTTGTCGATC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGATC
*
23707494 CTGCTGC
131 CCGCTGC
23707501 CGCAACCCTT
Statistics
Matches: 249, Mismatches: 53, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
170 8 0.03
171 233 0.94
172 8 0.03
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.20
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGATC
CCGCTGCTGGTCCTACTGCCACAACCCTCAATCCAAGCTGA
Found at i:23707740 original size:158 final size:159
Alignment explanation
Indices: 23707360--23707744 Score: 400
Period size: 159 Copynumber: 2.4 Consensus size: 159
23707350 TCGGTCCAAT
* * * *
23707360 CTGATCTTAGACTGGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC
1 CTGAGCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAC
* * * * **
23707425 TCAGCCAATCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCTCTGCATGTTGTC
66 TCAGCCAATCGGACAGGCAGAATGCACAAGCCAGGGACCGACCCGATCCCCCTCTACATGTTACC
* * * * *
23707490 GATCCTGCTGCCGCAACCCTTGGTCGGGT
131 GATCCCGCTGCCACAACCCTCGATCGGGA
* * * * * **
23707519 CTGATCTTAAACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGTGTATGGGCAC
1 CTGAGCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAC
* * * * * * *
23707584 TGAGCCAGTCGGACATGCATAATGCACAAGTCAGGGATCTG-CCCGATCCCCC-CTACGTGTTAC
66 TCAGCCAATCGGACAGGCAGAATGCACAAGCCAGGGA-CCGACCCGATCCCCCTCTACATGTTAC
* *
23707647 CGGTCCCGCTGCCACAACCCTCGATC-TGA
130 CGATCCCGCTGCCACAACCCTCGATCGGGA
* * * *
23707676 CTGGGGCTTAAACAT-GGAATGAACTCCCTATGCCTATGCCAACCCACTAAACGAGCGTGCGGGC
1 CT-GAGCTTAAAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC
23707740 ACTCA
64 ACTCA
23707745 CTAAACGAGC
Statistics
Matches: 182, Mismatches: 41, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
157 3 0.02
158 80 0.44
159 97 0.53
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.19
Consensus pattern (159 bp):
CTGAGCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAC
TCAGCCAATCGGACAGGCAGAATGCACAAGCCAGGGACCGACCCGATCCCCCTCTACATGTTACC
GATCCCGCTGCCACAACCCTCGATCGGGA
Found at i:23707750 original size:23 final size:23
Alignment explanation
Indices: 23707720--23707767 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
23707710 TATGCCAACC
23707720 CACTAAACGAGCGTGCGGGCACT
1 CACTAAACGAGCGTGCGGGCACT
23707743 CACTAAACGAGCGTGCGGGCACT
1 CACTAAACGAGCGTGCGGGCACT
23707766 CA
1 CA
23707768 GCCAGCCGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.27, C:0.31, G:0.29, T:0.12
Consensus pattern (23 bp):
CACTAAACGAGCGTGCGGGCACT
Found at i:23707940 original size:26 final size:26
Alignment explanation
Indices: 23707889--23707941 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
23707879 CCGATCCAAT
* *
23707889 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
*
23707915 CTTAGACAT-GGAATAAACTCTATATG
1 CTTAGAC-TGGGAATAAACTCCATATG
23707941 C
1 C
23707942 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:23708420 original size:26 final size:26
Alignment explanation
Indices: 23708391--23708446 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
23708381 CCAGTCCGCT
23708391 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* **
23708417 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
23708443 CTTA
1 CTTA
23708447 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23708984 original size:26 final size:26
Alignment explanation
Indices: 23708955--23709033 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
23708945 CTGGTCCGAT
*
23708955 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
23708981 CTTAGAGTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
23709007 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
23709033 C
1 C
23709034 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:23709129 original size:211 final size:211
Alignment explanation
Indices: 23708770--23709192 Score: 473
Period size: 211 Copynumber: 2.0 Consensus size: 211
23708760 CCGGTTTGAT
* * *
23708770 CTTAGACTGGGAATGAACTCTGTATGCTTAGATATGGAATGAACTTCGTATGCCTAAGCCATCCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * *
23708835 ACAAAATGAGCATGCAGGTGGTCAACCGACCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCC
66 ACAAAACGAGCATGCAGGTGCTCAACCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC
* ** *
23708900 AGTCCTACCCAACGTGCTG-TTGATCCTGCTACCACAACCCTC-AGTCTGG-TCCGATCTTAGAC
131 AGTCCTACCCAACGTGCTGCTAG-TCCCACTACCACAACCCTCGA-TCTGGCTACGA-CTTAGAC
* *
23708962 -TGGGAATGAACTCCGTATG
193 AT-GAAATGAACTCCCTATG
* * * *
23708981 CTTAGAGTGGGGATGAACTCCGTATGCTTA-A-ACTGGGGATGAACTCCGTATGCCTAAGTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGATA-T-GGAATGAACTCCGTATGCCTAAGCCAAC
* * ** ** *
23709044 CCACGAAACGAGCGTGCAGGTGCTCAGTCGGTCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGC
64 CCACAAAACGAGCATGCAGGTGCTCAACCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGAC
* * **
23709109 CCGGTCC-CCCTCTGCGTGCTGCTAGTCCCACTACCACAACCCTCGATCTGGCTACGACTTAGAC
129 CCAGTCCTACC-CAACGTGCTGCTAGTCCCACTACCACAACCCTCGATCTGGCTACGACTTAGAC
23709173 ATGAAATGAACTCCCTATG
193 ATGAAATGAACTCCCTATG
23709192 C
1 C
23709193 CTAAGCCAAC
Statistics
Matches: 176, Mismatches: 29, Indels: 14
0.80 0.13 0.06
Matches are distributed among these distances:
209 1 0.01
210 4 0.02
211 163 0.93
212 8 0.05
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.21
Consensus pattern (211 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACAAAACGAGCATGCAGGTGCTCAACCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC
AGTCCTACCCAACGTGCTGCTAGTCCCACTACCACAACCCTCGATCTGGCTACGACTTAGACATG
AAATGAACTCCCTATG
Found at i:23709362 original size:26 final size:26
Alignment explanation
Indices: 23709324--23709375 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23709314 CCAGTTCGAT
23709324 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
*
23709350 CTTAGAC-AGGGGATGAACTTCGTATG
1 CTTAGACTA-GGGATGAACTCCGTATG
23709376 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:23710051 original size:26 final size:26
Alignment explanation
Indices: 23710022--23710075 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
23710012 GGTCTGATCT
* **
23710022 TAGATTGGGAATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCCATATGCC
*
23710048 TAGACTGGGGATGAACTCCATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
23710074 TA
1 TA
23710076 AGTCAACCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Found at i:23710929 original size:170 final size:170
Alignment explanation
Indices: 23710582--23710941 Score: 377
Period size: 170 Copynumber: 2.1 Consensus size: 170
23710572 CGCATATCAT
* * * * * *
23710582 GCTTAGACTGGGGATGAGCTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAA
1 GCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAA
* * * *
23710647 CCAATCGGAGAGGCATAGTGCATAAGCCAGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
66 CCAATCGGAGAGGCAGAATGCACAAGCCAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCC
* * ** * *
23710712 CGCTGCCAGTCCTGCTGCCACAACCCACGGTCTAGCTGGG
131 CGCTGCCAGTCCTACGGCCACAACCCACAATCCAGCTGGA
* * *
23710752 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAAGCCATGAAACGAGCATGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCA
* * * *
23710816 GCCGA-CTGGAGAGGCAGAATGCACAAGCCAGGGATCGGCTCGATCCCCC-CTGCGTGCTGTCGA
65 ACCAATC-GGAGAGGCAGAATGCACAAGCCA-GGATCAGCCCGATCCCCCTCTGCGTGCTGTCGA
* * ** * * *
23710879 TCCTGTTGCTGGTCCTACGGCCGCAACCCTCAATCCGGTCT-GA
128 TCCCGCTGCCAGTCCTACGGCCACAACCCACAATCCAG-CTGGA
*
23710922 TCTTAGACTGGGAATGAACT
1 GCTTAGACTGGGAATGAACT
23710942 CTATATGCTT
Statistics
Matches: 154, Mismatches: 31, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
169 2 0.01
170 134 0.87
171 18 0.12
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (170 bp):
GCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAA
CCAATCGGAGAGGCAGAATGCACAAGCCAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCC
CGCTGCCAGTCCTACGGCCACAACCCACAATCCAGCTGGA
Found at i:23711249 original size:159 final size:158
Alignment explanation
Indices: 23710948--23711312 Score: 362
Period size: 159 Copynumber: 2.3 Consensus size: 158
23710938 AACTCTATAT
* * *
23710948 GCTTAG-CATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAA
* ** * *
23711012 CCGACCGGAGAGCTAGAATGCGTAAGCCGAGGAACGGCTCGGTCCCCCCCTGCGTGCTGTCGATC
66 CCGACC-GAAAGCTAGAATGCCCAAGCCGAGGAACGGCCCGGTCCCCCCCTGCGTGCTGCCGATC
* **** * * *
23711077 CTGCTGTTGCAACCCTTGGTTCGGTCCGA
130 CCGCTACCACAACCCTCGGTCCAGTCCGA
* * *
23711106 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCA
* * * * *
23711170 GCC-AGCC-AAAGCTGCATAATGCCCAAGCC-AGGGATCGGCCCGGTCCCTCTCTGCGTGCTGCC
65 ACCGA-CCGAAAGCT--AGAATGCCCAAGCCGA-GGAACGGCCCGGTCCCCCCCTGCGTGCTGCC
* ** *
23711232 GGTCCCGCTACCACAACCCTCGGTCCAGTTGGG
126 GATCCCGCTACCACAACCCTCGGTCCAGTCCGA
* * *
23711265 GCTTAGACATGGAATCAACTCCCTATGCCTAAGCCAACACACGAAACG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
23711313 GCCATGTGGG
Statistics
Matches: 167, Mismatches: 33, Indels: 13
0.78 0.15 0.06
Matches are distributed among these distances:
157 5 0.03
158 8 0.05
159 153 0.92
160 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAA
CCGACCGAAAGCTAGAATGCCCAAGCCGAGGAACGGCCCGGTCCCCCCCTGCGTGCTGCCGATCC
CGCTACCACAACCCTCGGTCCAGTCCGA
Found at i:23711621 original size:513 final size:513
Alignment explanation
Indices: 23710583--23711582 Score: 1104
Period size: 513 Copynumber: 2.0 Consensus size: 513
23710573 GCATATCATG
* *
23710583 CTTAGACTGGGGATGAGCTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
* ** * *
23710648 CAATCGGAGAGGCATAGTGCATAAGCCAGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCCC
66 CAACCAAAGAGGCATAATGCACAAGCCAGGATCAGCCCGGT--CCCTCTGCGTGCTGTCGAT--C
* * * * * *
23710713 GCTGCCAGTCCTGCTGCCACAACCCACGGTCTAGCTGGGGCTTAGACATGGAATGAACTTCGTAT
127 GCTGCCAGTCCCGCTACCACAACCCACGGTCCAGCTGGGGCTTAGACATGGAATCAACTCCCTAT
* *
23710778 GCCTAAGCCAAGCCATGAAACGAGCATGCGGGCGCTCAGCCGACTGGAGAGGCAGAATGCACAAG
192 GCCTAAGCCAAGCCACGAAACGAGCATGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAG
* * * *
23710843 CCAGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCCTGTTGCTGGTCCTACGGCCGCAACCC
257 CCAGGGATCAGCCCAATCCCCCCTGCGTGCTGCCGATCC---T-CTGG-CCTA--GCCGCAACCC
* *
23710908 TCAATCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGCATGGAATGAACTCCGTAT
315 TCAATCCGGTCTGATCTTAAACTGGGAATGAACTCCATATGCTTAGCATGGAATGAACTCCGTAT
* * * ** * * *
23710973 GCCTAAGCCAACCTACGAAATGAGCGTGCGGGTGCTCAACCGACCGGAGAGCTAGAATGCGTAAG
380 CCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACAGACCAGAGAGCTAGAATGCGCAAG
* * * * * *
23711038 CCGAGGAACGGCTCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTGTTGCAACCCTTGGTTCGGTC
445 CCGAAGAACGGCCCGATCCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTC
23711103 CGAT
510 CGAT
* * * *
23711107 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
* ** * *
23711172 CAGCCAAAGCTGCATAATGCCCAAGCCAGGGATCGGCCCGGT-CC-CT-C-T-CTG-CG-T-GCT
66 CAACCAAAGAGGCATAATGCACAAGCCA-GGATCAGCCCGGTCCCTCTGCGTGCTGTCGATCGCT
* * *
23711229 GCCGGTCCCGCTACCACAACCCTCGGTCCAGTTGGGGCTTAGACATGGAATCAACTCCCTATGCC
130 GCCAGTCCCGCTACCACAACCCACGGTCCAGCTGGGGCTTAGACATGGAATCAACTCCCTATGCC
* * *
23711294 TAAGCCAA-CACACGAAACG-GCCATGTGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGA-AAG
195 TAAGCCAAGC-CACGAAACGAG-CATGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGC-ACAAG
* **
23711356 CC-GAGGATCAGCCCAATCCCCCCTGCGTGCTGCCGAT-C-CT-G-CT-GCCGTAACCCTCGGTC
257 CCAG-GGATCAGCCCAATCCCCCCTGCGTGCTGCCGATCCTCTGGCCTAGCCGCAACCCTCAATC
* * * *
23711415 TGGTTTGATCTTAAACTGGGAATGAACTCCATTTGCTTAG-ATTGGGGATGAACTCCGTATCCCT
321 CGGTCTGATCTTAAACTGGGAATGAACTCCATATGCTTAGCA-T-GGAATGAACTCCGTATCCCT
* * * * * *
23711479 AAGTCAACCCAGGAAACGAGCGTGTGGGCACTCAGTCAG-CCAGAGAGGTAGAATGCGCAAGCTG
384 AAGCCAACCCACGAAACGAGCGTGCGGGCACTCA-ACAGACCAGAGAGCTAGAATGCGCAAGCCG
* *
23711543 AAGATCGGCCCGAT-CCCCCCTGCGTGCTGTCGATCTTGCT
448 AAGAACGGCCCGATCCCCCCCTGCGTGCTGTCGATCCTGCT
23711583 ATTGGTCCTG
Statistics
Matches: 406, Mismatches: 62, Indels: 39
0.80 0.12 0.08
Matches are distributed among these distances:
500 1 0.00
501 74 0.18
502 76 0.19
503 2 0.00
504 2 0.00
506 1 0.00
507 2 0.00
512 4 0.01
513 141 0.35
514 1 0.00
516 1 0.00
517 2 0.00
518 3 0.01
519 1 0.00
520 1 0.00
521 2 0.00
522 2 0.00
524 78 0.19
525 12 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (513 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
CAACCAAAGAGGCATAATGCACAAGCCAGGATCAGCCCGGTCCCTCTGCGTGCTGTCGATCGCTG
CCAGTCCCGCTACCACAACCCACGGTCCAGCTGGGGCTTAGACATGGAATCAACTCCCTATGCCT
AAGCCAAGCCACGAAACGAGCATGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCCAG
GGATCAGCCCAATCCCCCCTGCGTGCTGCCGATCCTCTGGCCTAGCCGCAACCCTCAATCCGGTC
TGATCTTAAACTGGGAATGAACTCCATATGCTTAGCATGGAATGAACTCCGTATCCCTAAGCCAA
CCCACGAAACGAGCGTGCGGGCACTCAACAGACCAGAGAGCTAGAATGCGCAAGCCGAAGAACGG
CCCGATCCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCCGAT
Found at i:23711903 original size:697 final size:696
Alignment explanation
Indices: 23710848--23712141 Score: 1643
Period size: 697 Copynumber: 1.9 Consensus size: 696
23710838 ACAAGCCAGG
* * * *
23710848 GATCGGCTCGATCCCCCCTGCGTGCTGTCGATCCTGTTGCTGGTCCTACGGCCGCAACCCTCAAT
1 GATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACTGGTCCTACGACCGCAACCCTCAAT
* * * *
23710913 CCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGCATGGAATGAACTCCGTATGCCTA
66 CCGGTCCGATCTGAGACTGGGAATGAACTCTACATGCTTAGCATAGAATGAACTCCGTATGCCTA
* * * ** *
23710978 AGCCAACCTACGAAATGAGCGTGCGGGTGCTCAACCGACCGGAGAGCTAGAATGCGTAAGCCGAG
131 AGCCAACCCACGAAATGAGCATGCAGGCACTCAACCGACCGGAGAGCTAGAATGCGCAAGCCGAG
* * * * * * * *
23711043 GAACGGCTCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTGTTGCAACCCTTGGTTCGGTCCGATC
196 GAACAGCTCGGTCCCCCCCTGCGTGCTATCGATCCTGCCGCTACAACCCTCGGTCCGATCCGATC
**
23711108 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTGAGCC
261 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTGAGCC
* * * *
23711173 AGCCAAAGCTGCATAATGCCCAAGCCAGGGATCGGCCCGGTCCCTCTCTGCGTGCTGCCGGTCCC
326 AGCAAAAGC-GCATAATGCCCAAGCCAGGGATCGACCCAGTCCCCCTCTGCGTGCTGCCGGTCCC
*
23711238 GCTACCACAACCCTCGGTCCAGTTGGGGCTTAGACATGGAATCAACTCCCTATGCCTAAGCC-AA
390 GCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATCAACTCCCTATGCCTAAGCCAAA
** * * *
23711302 CACACGAAACGGCCATGTGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGAAAGCCGAGGATC-A
455 C-CACGAAACGGCCATACGGGCACTCAATCGACCGGAGAGGCAGAATGCGAAAGCCGAGGATCGA
* * * * * **
23711366 GCCCAATCCCCCCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCG-GTCTGGTTTGATCTTAAA
519 -CCCAATCCCCCCTGCATGCTACCGATCCTGCTACCGCAACCCTCGATTC-GGTCAGATCTTAAA
23711430 CTGGGAATGAACTCCATTTGCTTAGATTGGGGATGAACTCCGTATCCCTAAGTCAACCCAGGAAA
582 CTGGGAATGAACTCCATTTGCTTAGATTGGGGATGAACTCCGTATCCCTAAGTCAACCCAGGAAA
23711495 CGAGCGTGTGGGCACTCAGTCAGCCAGAGAGGTAGAATGCGCAAGCTGAA
647 CGAGCGTGTGGGCACTCAGTCAGCCAGAGAGGTAGAATGCGCAAGCTGAA
* * * * * **
23711545 GATCGGCCCGATCCCCCCTGCGTGCTGTCGATCTTGCTATTGGTCCTGCTACCGCAAGCCTCGGT
1 GATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACTGGTCCTACGACCGCAACCCTCAAT
**
23711610 CCGGTCCGATCTGAGACTGGGAATGAACTC-AGCATGCTTAGACATAGAATGAACTCTTTATGCC
66 CCGGTCCGATCTGAGACTGGGAATGAACTCTA-CATGCTTAG-CATAGAATGAACTCCGTATGCC
* * **
23711674 TAAGCCAACCCATGAAATGAGCATGCAGGCACTCAGCCGGTCGGAGAGGC-AGAATGCGCAAGCC
129 TAAGCCAACCCACGAAATGAGCATGCAGGCACTCAACCGACCGGAGA-GCTAGAATGCGCAAGCC
* * *
23711738 G-GGATCAGCTCGGT-CCCCCCTG-GATGCTATCGATCCTGCCGCTATAACCCTCGGTCCGATCT
193 GAGGAACAGCTCGGTCCCCCCCTGCG-TGCTATCGATCCTGCCGCTACAACCCTCGGTCCGATCC
* * * * * * * * *
23711800 GATCTTAGATTGGGAATGATCATTCGTATGCCTAAGTCAGCCCAGGAAATGAGTGTTCAGGCATT
257 GATCTTAGACTGGGAATGAAC-TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACT
* * * * * * *
23711865 GAGCTGATCGAAAAG-GCATAATGCGCAAGTCGGGGATCGACTCAGTCCCCCTCTGCGTGCTGTC
321 GAGC-CAGC-AAAAGCGCATAATGCCCAAGCCAGGGATCGACCCAGTCCCCCTCTGCGTGCTGCC
* * *
23711929 GGTCCCGTTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
384 GGTCCCGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATCAACTCCCTATGCCTAA
* * * * * * * * *
23711994 GCTAAACCATGAAATGGGCGTACGGGCACTCAATCGATCGGAGAGGCAGAATGCGCAAGGCGGGG
449 GCCAAACCACGAAACGGCCATACGGGCACTCAATCGACCGGAGAGGCAGAATGCGAAAGCCGAGG
*
23712059 ATCGACCCGATCCCCCCTGCATGCTACCGATCCTGCTACCGCAACCCTCGATTCGGTCAGATCTT
514 ATCGACCCAATCCCCCCTGCATGCTACCGATCCTGCTACCGCAACCCTCGATTCGGTCAGATCTT
*
23712124 AGACTGGGAATGAACTCC
579 AAACTGGGAATGAACTCC
23712142 GTATGCCTAA
Statistics
Matches: 500, Mismatches: 87, Indels: 20
0.82 0.14 0.03
Matches are distributed among these distances:
695 1 0.00
696 57 0.11
697 357 0.71
698 79 0.16
699 6 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (696 bp):
GATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACTGGTCCTACGACCGCAACCCTCAAT
CCGGTCCGATCTGAGACTGGGAATGAACTCTACATGCTTAGCATAGAATGAACTCCGTATGCCTA
AGCCAACCCACGAAATGAGCATGCAGGCACTCAACCGACCGGAGAGCTAGAATGCGCAAGCCGAG
GAACAGCTCGGTCCCCCCCTGCGTGCTATCGATCCTGCCGCTACAACCCTCGGTCCGATCCGATC
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTGAGCC
AGCAAAAGCGCATAATGCCCAAGCCAGGGATCGACCCAGTCCCCCTCTGCGTGCTGCCGGTCCCG
CTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATCAACTCCCTATGCCTAAGCCAAAC
CACGAAACGGCCATACGGGCACTCAATCGACCGGAGAGGCAGAATGCGAAAGCCGAGGATCGACC
CAATCCCCCCTGCATGCTACCGATCCTGCTACCGCAACCCTCGATTCGGTCAGATCTTAAACTGG
GAATGAACTCCATTTGCTTAGATTGGGGATGAACTCCGTATCCCTAAGTCAACCCAGGAAACGAG
CGTGTGGGCACTCAGTCAGCCAGAGAGGTAGAATGCGCAAGCTGAA
Found at i:23712232 original size:317 final size:322
Alignment explanation
Indices: 23711645--23712403 Score: 813
Period size: 317 Copynumber: 2.4 Consensus size: 322
23711635 AACTCAGCAT
* ** * * *
23711645 GCTTAGACATAGAATGAACTCTTTATGCCTAAGCCAACCCATGAAATGAGCATGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAA
* * * * * *
23711710 CCGGTCGGAGAGGCAGAATGCGCAA-GCCGGGATC-AGCTCGGTCCCCCCTGGATGCTATCGATC
66 CCGATCGGAGAGGCAGAATGCGCAAGGCGGGGATCGA-CCCGATCCCCCCTGCATGCTACCGATC
* * * * * * * *
23711773 CTGCCGCTATAACCCTCGGTCCGATCTGATCTTAGATTGGGAATGATCATTCGTATGCCTAAGTC
130 CTGCCACCACAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAACATCCGTATGCCTAAGTC
* * * * * * * * * *
23711838 AGCCCAGGAAATGAGTGTTCAGGCATTGAGCTGATCGAAAAGGCATAATGCGCAAGTCGGGGATC
195 AACCCACGAAAGGAGTGTGCAGG-ATTGAACCGACCGAAAAGGCATAATGCACAAGCCAGGGATC
* * * *
23711903 GACTCAGTCCCCCTCTGCGTGCT-GT-CGGT-CC-C-GTTGCCACAACCCTCGGTCCAGCTGGG
259 GACTCAGTCCCCCTCTGCGTGCTAATCCGCTGCCACTGCTGCCACAACCCTAGGTCCAGCTGGG
* * * *
23711962 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAAACCATGAAATGGGCGTACGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAA
*
23712027 TCGATCGGAGAGGCAGAATGCGCAAGGCGGGGATCGACCCGATCCCCCCTGCATGCTACCGATCC
66 CCGATCGGAGAGGCAGAATGCGCAAGGCGGGGATCGACCCGATCCCCCCTGCATGCTACCGATCC
* * * *
23712092 TGCTACCGCAACCCTCGATTCGGTCAGATCTTAGACTGGGAATGAAC-TCCGTATGCCTAAGTCA
131 TGCCACCACAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAACATCCGTATGCCTAAGTCA
* * *
23712156 ACCCTCGAAAGGAGTGTGC-GG-TTGCTCAACCGGCCGAATAGGCATAATGCACAAGCCAGGGAT
196 ACCCACGAAAGGAGTGTGCAGGATTG---AACCGACCGAAAAGGCATAATGCACAAGCCAGGGAT
* *
23712219 C-AGCTCGGTCCCCCTCTGCGTGCTACCAATCCCGCTGCCGATCTTGCTGCCACAACCCTAGGTT
258 CGA-CTCAGTCCCCCTCTGCGTGCT---AAT-CCGCTGCC-A-C-TGCTGCCACAACCCTAGGTC
*
23712283 CGGCTGGG
315 CAGCTGGG
* *
23712291 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAA
* * * *
23712356 CC-AGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCC
66 CCGA-TCGGAGAGGCAGAATGCGCAAGGCGGGGATCGACCCGATCCCCC
23712404 TACGTGCTGT
Statistics
Matches: 363, Mismatches: 60, Indels: 26
0.81 0.13 0.06
Matches are distributed among these distances:
314 3 0.01
316 3 0.01
317 157 0.43
318 68 0.19
319 1 0.00
321 1 0.00
323 3 0.01
324 2 0.01
327 1 0.00
328 1 0.00
329 123 0.34
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (322 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAA
CCGATCGGAGAGGCAGAATGCGCAAGGCGGGGATCGACCCGATCCCCCCTGCATGCTACCGATCC
TGCCACCACAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAACATCCGTATGCCTAAGTCA
ACCCACGAAAGGAGTGTGCAGGATTGAACCGACCGAAAAGGCATAATGCACAAGCCAGGGATCGA
CTCAGTCCCCCTCTGCGTGCTAATCCGCTGCCACTGCTGCCACAACCCTAGGTCCAGCTGGG
Found at i:23712476 original size:26 final size:26
Alignment explanation
Indices: 23712435--23712486 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23712425 CTGCAACCAT
23712435 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23712461 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
23712487 GCTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23712750 original size:27 final size:26
Alignment explanation
Indices: 23712694--23712749 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
23712684 CCATTTTCTA
*
23712694 TTTTGTGGTTCGGGATTTTTTAAAGT
1 TTTTGTGGTTCAGGATTTTTTAAAGT
*
23712720 TTTTGTGGTTCAGGATTTTTTAAAAT
1 TTTTGTGGTTCAGGATTTTTTAAAGT
23712746 TTTT
1 TTTT
23712750 TTAGAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.18, C:0.04, G:0.21, T:0.57
Consensus pattern (26 bp):
TTTTGTGGTTCAGGATTTTTTAAAGT
Found at i:23713086 original size:11 final size:11
Alignment explanation
Indices: 23713070--23713095 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
23713060 GGTTAGGCTA
23713070 TCCGGTGATGC
1 TCCGGTGATGC
23713081 TCCGGTGATGC
1 TCCGGTGATGC
23713092 TCCG
1 TCCG
23713096 ACGATGGTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.31, G:0.35, T:0.27
Consensus pattern (11 bp):
TCCGGTGATGC
Found at i:23714150 original size:26 final size:26
Alignment explanation
Indices: 23714114--23714166 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23714104 CCGGTCCGAT
*
23714114 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
23714140 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
23714166 C
1 C
23714167 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23714873 original size:26 final size:26
Alignment explanation
Indices: 23714835--23714887 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23714825 GGCTCAAACT
*
23714835 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23714861 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23714887 C
1 C
23714888 CTAAGCCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23715156 original size:159 final size:159
Alignment explanation
Indices: 23714861--23715223 Score: 362
Period size: 159 Copynumber: 2.3 Consensus size: 159
23714851 ACTTCGTATG
** * * * * *
23714861 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAGCCACGAAACGAGCGTGCGGGTGCTTAGT
1 CTTAGACATGGAATGAACTCCGTATGCAAAAGCCAACCCACGAAACGAGCGTGCGGGCGATGAGC
* * * * *
23714926 CGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTAGTCCCCCCTTGCGTGCTGTCGATCC
66 CGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGCCCGAGTCCCCCCTTGCGTGCTGCCGATCC
** *
23714991 TGCTGCCTCAACCCTTGATTCGGTCTAAC
131 CACTGCCACAACCCTTGATTCGGTCTAAC
*
23715020 CTTAGAC-TGGGAATGAACTCCGTATGCAAAAGTCAACCCACGAAACGAGCGTGCGGGCGATGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCAAAAGCCAACCCACGAAACGAGCGTGCGGGCGATGAG
* * *
23715084 CCGACCGAAGAGGCATAATTC-CTAAGTTGGGGATCGACCCGA-T-CCCCCTCTGCGTGCTGCCG
65 CCGACCGAAGAGGCAGAATGCGC-AAGTCGGGGATCG-CCCGAGTCCCCCCT-TGCGTGCTGCCG
* * * ****
23715146 GTCCCACTGCCACAA-CCTTCAGTCCGGAT-GGGG
127 ATCCCACTGCCACAACCCTTGA-TTCGG-TCTAAC
**
23715179 CTTAGACATGGAATGAACTCAC-TATGCCTAAGCCAACCCACGAAA
1 CTTAGACATGGAATGAACTC-CGTATGCAAAAGCCAACCCACGAAA
23715224 TGGTTGTGTG
Statistics
Matches: 167, Mismatches: 29, Indels: 16
0.79 0.14 0.08
Matches are distributed among these distances:
158 13 0.08
159 148 0.89
160 6 0.04
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCAAAAGCCAACCCACGAAACGAGCGTGCGGGCGATGAGC
CGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGCCCGAGTCCCCCCTTGCGTGCTGCCGATCC
CACTGCCACAACCCTTGATTCGGTCTAAC
Found at i:23715725 original size:171 final size:169
Alignment explanation
Indices: 23715411--23715798 Score: 422
Period size: 171 Copynumber: 2.3 Consensus size: 169
23715401 AACTCCGTAT
* * * * *
23715411 GCTTAGACTAGGGATGAACCCCGTATGCCTAAGTCAACCCATGAAACGAGATGCGGGTGCTCAAC
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGATACGGGCGCTCAAC
* * * * * **
23715476 CGGCCGGAGAGGCATAATGTACAAGCCGAGGATCAGCCCGATCCCCCTTTGCGTGCTGTTGATCC
65 CGACCGGAGAGGCAAAATGCACAAACCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCC
* * *
23715541 CGCTGCCGGTCTTGTTGCCACAACCCAT-GGTCC-GACTGGG
130 CGCTGCCGGTCTTGCTGCCACAACCC-TCAGTCCGGACT-GA
*
23715581 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATACGGGCGCTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAG-ATACGGGCGCTCAA
* * * * * *
23715646 CCGATCGGAGAGGCAAAATGCCCAAACCGGGGATCGGCCCGATCCCACC-CTGCGTTCTGCCGTT
64 CCGACCGGAGAGGCAAAATGCACAAACCGAGGATCAGCCCGATCCC-CCTCTGCGTGCTGCCGAT
* ** * * *
23715710 CCTGCTGTTGGTCTTGCTGTCGCAACCCTCAGTCCGGTCTGA
128 CCCGCTGCCGGTCTTGCTGCCACAACCCTCAGTCCGGACTGA
* *
23715752 TCTTAGACTGTGAATGAACTCCGTTTGCCTAAGTCAACCCATGAAAC
1 GCTTAGACTG-GAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
23715799 GAGCGTGCAG
Statistics
Matches: 181, Mismatches: 31, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
170 47 0.26
171 129 0.71
172 5 0.03
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (169 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGATACGGGCGCTCAACC
GACCGGAGAGGCAAAATGCACAAACCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCCC
GCTGCCGGTCTTGCTGCCACAACCCTCAGTCCGGACTGA
Found at i:23716841 original size:26 final size:26
Alignment explanation
Indices: 23716803--23716855 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23716793 GGCTCAAAAT
23716803 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23716829 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23716855 C
1 C
23716856 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23717185 original size:159 final size:159
Alignment explanation
Indices: 23716826--23717243 Score: 423
Period size: 159 Copynumber: 2.6 Consensus size: 159
23716816 TGAACTCCGT
* * *
23716826 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTC
1 ATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* ** * * * * * * *
23716891 AGTTAGTCGGAGAGGCAGAATGTGCAAGTC-AGGGATCCGCTCGATCCCCCCTACGTGCTATCGA
66 AATCGGTCGAAGAGGCAGAATGCGTAAGCCGA-GGATCAGCCCGATCCCCCCTACGTACTATCGA
**** * * * *
23716955 TCTTGTTGCCGCAACCTTTGGTCTAGTCTG
130 TCCCACTGCCACAACCCTCGGTCTAGGCTG
* * * * *
23716985 AT-CTTAGAC-TGGGAATGAACTCCATTTGCATAAGTCAACCCACAAAATGAGCGTGCGGGCGCT
1 ATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * *
23717048 GAATGGGCCGAAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCCCCCTCTACGTACTGTCG
65 CAATCGGTCGAAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCC-CTACGTACTATCG
* *
23717113 GTCCCACTGCCACAACCCTCGGT-TCGGCTG
129 ATCCCACTGCCACAACCCTCGGTCTAGGCTG
* * *
23717143 -TGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACGCT
1 AT-GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
* *
23717207 CAACCGGTCGAAGAGGCAGAATGCATAAGCCGAGGAT
65 CAATCGGTCGAAGAGGCAGAATGCGTAAGCCGAGGAT
23717244 TGGCTTGGTC
Statistics
Matches: 207, Mismatches: 46, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 93 0.45
159 111 0.54
160 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (159 bp):
ATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
AATCGGTCGAAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCCCTACGTACTATCGAT
CCCACTGCCACAACCCTCGGTCTAGGCTG
Found at i:23717736 original size:26 final size:26
Alignment explanation
Indices: 23717685--23717737 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23717675 CTGGTCTGAT
** *
23717685 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACACGGAATGAACTCCATATG
*
23717711 CTTAGACACGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCATATG
23717737 C
1 C
23717738 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCATATG
Found at i:23718074 original size:159 final size:157
Alignment explanation
Indices: 23717710--23718109 Score: 394
Period size: 158 Copynumber: 2.5 Consensus size: 157
23717700 AACTCTATAT
* * *
23717710 GCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGGGTGAGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
** * * *
23717775 CCGACCAAAGAGGCAGAACGCGCAAGCAGAGGATCGGCCCAGTCCCCCCTGCGTGCTATCGATCC
66 CCGACCGGAGAGGCAGAACGCACAAGCAGAGGATCGGCCCAGTCCCCCCTGCAT-CTATCCATCC
* ** *
23717840 AACAGTCGTAACCCTCAGTCTAGTCCGA
130 AACAGCCACAACCCTCAGTCGAGTCCGA
* ** * * *
23717868 TCTTAGAC-TGGGAATGAACTTTGTAAGCCTAAGTCAACCCACT-AAATGAGCGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA-TGAAATGAGCGTGCGGGCGCTC
* * * * * * *
23717931 AGCCGACCGGAGAGGCATAATGCATAAGCCGGGGATCGGCCCGGTCCCCCTCTGCAT-TTTGCCA
64 AGCCGACCGGAGAGGCAGAACGCACAAGCAGAGGATCGGCCCAGTCCCCC-CTGCATCTAT-CCA
** * ** *
23717995 GTCCCGCTGCCACAACCCTCAGTCCGA-TTGGG
127 -TCCAACAGCCACAACCCTCAGT-CGAGTCCGA
* *
23718027 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* *
23718092 TCGACCGGAGAGGTAGAA
66 CCGACCGGAGAGGCAGAA
23718110 TGTGCAAGCT
Statistics
Matches: 192, Mismatches: 42, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 95 0.49
159 92 0.48
160 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAACGCACAAGCAGAGGATCGGCCCAGTCCCCCCTGCATCTATCCATCCA
ACAGCCACAACCCTCAGTCGAGTCCGA
Found at i:23719133 original size:26 final size:26
Alignment explanation
Indices: 23719094--23719146 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23719084 GGCTCAGAAT
23719094 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
23719120 CTTAGACATA-GAATGAACTCTGTATG
1 CTTAGAC-TAGGAATGAACTCTGTATG
23719146 C
1 C
23719147 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:23719420 original size:159 final size:156
Alignment explanation
Indices: 23719130--23719615 Score: 497
Period size: 159 Copynumber: 3.1 Consensus size: 156
23719120 CTTAGACATA
** * * * * *
23719130 GAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCTCTCAGCCGGTCGGAGA
1 GAATGAACTCCATATGCCTAAGCCAACCCATGAAA-GAGCGTACGGGCGCTCAGCCGGCCGAAGA
* * * * * * * *
23719195 GGCAGAATGTGCAAGCCGGGGATCGGCCTGATCCCCCCCTATGTGCTATTGATCCTGCTACTACA
65 GGCAGAATGCGCAAGTCGGGGATCGGCCCGAT-CCCCCCTACGTGCTGTCGATCCTGCTGCCACA
* *
23719260 ACCTTTGATCCAATCTGATCTTAGACTGG
129 ACCCTCGATCC-ATCTGATCTTAGACTGG
* * * * *
23719289 GAATGAACTCCATATGCATAAGTCAACCCATGAAATGAGCGTGCGGACGCTGAGCCGGCCGAAGA
1 GAATGAACTCCATATGCCTAAGCCAACCCATGAAA-GAGCGTACGGGCGCTCAGCCGGCCGAAGA
* * * * *
23719354 GGTATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTACGTGCTGCCGGTCCCGCTGCCACA
65 GGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCC-CTACGTGCTGTCGATCCTGCTGCCACA
* * **
23719419 ACCCTCGGTCCAGCTGGGGCTTAGACAT-G
129 ACCCTCGATCCATCT-GATCTTAGAC-TGG
* * * * * *
23719448 GAATGAACTCCCTATGCCTAACCCAACCCATGAAACAGGCGTACGGGCGCTCAACCGACCGAAAA
1 GAATGAACTCCATATGCCTAAGCCAACCCATGAAAGA-GCGTACGGGCGCTCAGCCGGCCGAAGA
* * ** *
23719513 GGCAGAATGCGCAAGTCGGGGATCGGCCCGATGCCCCCTGCGTGCTGTCGATCCTATTGCCGCAA
65 GGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCCACAA
*
23719578 CCCTCGATCCGATCCGATCTTAGACTGG
130 CCCTCGATCC-ATCTGATCTTAGACTGG
23719606 GAATGAACTC
1 GAATGAACTC
23719616 TGTATGCTTA
Statistics
Matches: 263, Mismatches: 58, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 58 0.22
159 203 0.77
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (156 bp):
GAATGAACTCCATATGCCTAAGCCAACCCATGAAAGAGCGTACGGGCGCTCAGCCGGCCGAAGAG
GCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCCACAAC
CCTCGATCCATCTGATCTTAGACTGG
Found at i:23719637 original size:26 final size:26
Alignment explanation
Indices: 23719596--23719648 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
23719586 CCGATCCGAT
23719596 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
23719622 CTTAGACTGAGG-ATGAACTTCGTATG
1 CTTAGACTG-GGAATGAACTTCGTATG
23719648 C
1 C
23719649 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:23721560 original size:26 final size:26
Alignment explanation
Indices: 23721530--23721582 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23721520 CTGATCCAAT
23721530 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23721556 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23721582 C
1 C
23721583 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23723148 original size:514 final size:507
Alignment explanation
Indices: 23722239--23723275 Score: 1062
Period size: 514 Copynumber: 2.0 Consensus size: 507
23722229 GGTCCTGCTA
* * * * *
23722239 CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGATCCAACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAACCAACCCAC
* * * * * *
23722304 GAAACAAGCGTGCGGGTGCTCATTCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCAACCCGA
66 GAAACAAGCGTACGGGCGCTCAGTCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGA
* * *
23722369 TACCCTACTGCATGCTGCCGATCCTGCTATCGGTCCTACTGCCGTAACCCTTGATCTGGTCCGAT
131 TACCCCACTACATGCTGCCGATCCTGC-ATC-GTCCTA---CCG-AACCCTAGATCTGGTCCGAT
*
23722434 CTTAGATTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
190 CTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * ** * * * *
23722499 ATGAAACGAGCGTGCGGGCGTTCAATCGACCGAAGAGGAAGAATGCGTAAGCCAAGGATCAGCTT
255 ACGAAACAAGCGTGCGGGCACTCAAGCGACCGAAGAGGAAGAATGCGCAAGCCAAGGATCAACCT
* * * * *
23722564 GGTCCCCCCTGCATAATGTCAATCCTGCTGCTGCAACCCTCGGTCCAGTCTGATCTTAGACTGGG
320 GATCCCCCCTGCATAATGTCAATCCTGCTGCTACAACCCTCGATCCAGACTGAGCTTAGACTGGG
* * * * * * **
23722629 AATGAACTCCGTATGCTTAAGTCAACCCATGAAACGAGCGTTC-GG-GCATTGAGCC-AGTTGGA
385 AATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGC--TCAGCCGA-CCGGA
* * *
23722691 GAGGCATAATGCGCAAGCCGAGGATCGACTCGGTCCCCCTCTACGTGCTATCGATCCCACTG
447 GAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCC-CTACGTGCTATCAATCCCACTG
* *
23722753 CCACAACCCTCGGTTCAACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAACCAACCCAC
1 CCACAACCCTCGATCCAACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAACCAACCCAC
** * *
23722818 GAAACGGGCGTACTGGCGCTCAGTCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGG
66 GAAACAAGCGTACGGGCGCTCAGTCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGA
* * * * *
23722883 T-CCCCCCTACGTGCTGTCGATCCTGC-T-G-CC-A-C-AACCCTCAG-TCTGGTCTGATCTTGG
131 TACCCCACTACATGCTGCCGATCCTGCATCGTCCTACCGAACCCT-AGATCTGGTCCGATCTTAG
* *
23722940 ACTGGGAATGAAC-TCTGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACG
195 ACTGGGAATGAACTTC-GTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * * * *
23723003 AAACAAGCGTGCGGGCACTC-AGCAGGCCGGAGAGGCATAATGCGCACGCCGAGGATCAACCTGA
258 AAACAAGCGTGCGGGCACTCAAGC-GACCGAAGAGGAAGAATGCGCAAGCCAAGGATCAACCTGA
* * ** *
23723067 TCCCCTTCTGCTTGCTGTCAATCTCGCTGCCGGTCTTGCTACCACAACCCTCGATCC-GACTGGG
322 TCCCC-CCTGCATAATGTCAA--TC-CT----G-C-TGCT---ACAACCCTCGATCCAGACT-GA
**
23723131 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAATTGAGCGTGCAGGTGCTCA
373 GCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCA
* * * *
23723195 GCCGACCGGAGAGGCAAAATGCGTAAGCTGGGGATCGACCCGGTCCCCCCTATGTGCTATCAATC
437 GCCGACCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTGCTATCAATC
*
23723260 CTACTG
502 CCACTG
*
23723266 TCACAACCCT
1 CCACAACCCT
23723276 TGGTCTGATC
Statistics
Matches: 430, Mismatches: 71, Indels: 45
0.79 0.13 0.08
Matches are distributed among these distances:
500 5 0.01
501 126 0.29
502 12 0.03
503 1 0.00
504 2 0.00
505 2 0.00
507 1 0.00
508 2 0.00
509 2 0.00
510 1 0.00
511 5 0.01
513 51 0.12
514 214 0.50
515 4 0.01
516 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.20
Consensus pattern (507 bp):
CCACAACCCTCGATCCAACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAACCAACCCAC
GAAACAAGCGTACGGGCGCTCAGTCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGA
TACCCCACTACATGCTGCCGATCCTGCATCGTCCTACCGAACCCTAGATCTGGTCCGATCTTAGA
CTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
CAAGCGTGCGGGCACTCAAGCGACCGAAGAGGAAGAATGCGCAAGCCAAGGATCAACCTGATCCC
CCCTGCATAATGTCAATCCTGCTGCTACAACCCTCGATCCAGACTGAGCTTAGACTGGGAATGAA
CTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCGACCGGAGAGGCAAAA
TGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTGCTATCAATCCCACTG
Found at i:23723265 original size:887 final size:888
Alignment explanation
Indices: 23721361--23723392 Score: 2214
Period size: 887 Copynumber: 2.3 Consensus size: 888
23721351 GGCTCAAAAT
* * * * *
23721361 CTTAGAC-TGGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
1 CTTAGACATGG-AATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGTGCTCAG
* * * * * * * * * * **
23721425 CCAACCGGAGAGGTAGAATGTGCAAGTCAGGGATCGA-CCGGT-CCCTCCTACGTGCTATCGATC
65 CCGACCGGAGAGGCAAAATGCGCAAGTCGGGGATCAACCCGATACCCTACTGCATGCTGCCGATC
* * * * *
23721488 CTACT-GCTGGTTTTCTTATTG-C--AACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACT
130 CTGCTATC-GG---TCCTACTGCCGTAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACT
* * *
23721549 CCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGC
191 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGC
* * * * * **
23721614 GCTCAGTCGGCCGGAGAGGCAGAATGCATAAGCCGAGGATCGAACCGATCCCCCCTGCATGCTGC
256 GCTCAATCGACCGAAGAGGAAGAATGCATAAGCCAAGGATCGAACCGATCCCCCCTGCATAATGC
* *
23721679 CGATCCTGTTGCTGGTCCTGGTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAAC
321 CAATCC--TTGCTGG-CC--GT--CGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAAC
* **
23721744 TCCGTATGCCTAAGTCAAACCCATTAAAGCTGAAAGCGTTCGGATGTTGAGCCAACCGGAGAGGC
379 TCCGTATGCCTAAGTCAAACCCATGAAAGCTG-AAGCGTTCGGACATTGAGCCAACCGGAGAGGC
* * *
23721809 ATAATGCACAAGCCGAGGATCGGCTCGGTCCCCCTCTGCGTGCTACCGATCCCGCTACCACAACA
443 ATAATGCACAAGCCGAGGATCGACTCGGTCCCCCTCTACGTGCTACCGATCCCACTACCACAACA
* * * * *
23721874 CTTGGTTCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGC
508 CTCGGTTCAACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGC
* * * * * * *
23721939 CGTGCGGGCACTCATCCGATTGGAGAGGTAGAATGCGCATGCCAGGGATCTACCCGGTCCCTCCT
573 CGTACGGGCACTCATCCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCAACCCGGTCCCCCCT
* * *
23722004 GCATGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTGATCTTAGACTGAGAATGA
638 ACATGCTGTCGATCCTGCTACCACAACCCTCAGTCTGG--TGATCTGATCTTAGACTGAGAATGA
* * **
23722069 ACTCCATATGCTTGGACTGGGGATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCGTACG
701 ACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACG
* * * * **
23722134 GGCGCTCAATCGACTAGAGAGGCCGGTCGTAGAGGCATAATGTGTGAACTGAGGATCGGCTCGAT
766 GGCACTCAA-CGAC---A-AGGCCGG-CGTAGAGGCATAATGCGTCAACCGAGGATCACCTCGAT
*
23722199 CCCTCTCTACGTCCTGCCGATCCCACTGCCGGTCCTGCTACCACAACCCTCGATCCGACTGGGG
825 CCCTCTCTACGTCCTGCCAATCCCACTGCCGGTCCTGCTACCACAACCCTCGATCCGACTGGGG
* * * **
23722263 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCATT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGTGCTCAGC
** *
23722328 CGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCAACCCGATACCCTACTGCATGCTGCCGATCC
66 CGACCGGAGAGGCAAAATGCGCAAGTCGGGGATCAACCCGATACCCTACTGCATGCTGCCGATCC
* * * * *
23722393 TGCTATCGGTCCTACTGCCGTAACCCTTGATCTGGTCCGATCTTAGATTGGGAATGAACTTCGTA
131 TGCTATCGGTCCTACTGCCGTAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACTCCGTA
*
23722458 TGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTC
196 TGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC
* * * * *
23722522 AATCGACCGAAGAGGAAGAATGCGTAAGCCAAGGATC-AGCTTGGTCCCCCCTGCATAATGTCAA
260 AATCGACCGAAGAGGAAGAATGCATAAGCCAAGGATCGAAC-CGATCCCCCCTGCATAATGCCAA
* *
23722586 TCC-TGCT-G-C-T-GCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
324 TCCTTGCTGGCCGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* *** *
23722646 TAAGTC-AACCCATGAAA-C-G-AGCGTTCGGGCATTGAGCCAGTTGGAGAGGCATAATGCGCAA
389 TAAGTCAAACCCATGAAAGCTGAAGCGTTCGGACATTGAGCCAACCGGAGAGGCATAATGCACAA
* * *
23722707 GCCGAGGATCGACTCGGTCCCCCTCTACGTGCTATCGATCCCACTGCCACAACCCTCGGTTCAAC
454 GCCGAGGATCGACTCGGTCCCCCTCTACGTGCTACCGATCCCACTACCACAACACTCGGTTCAAC
* * *
23722772 TGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGGCGTACTGGCGC
519 TGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGCCGTACGGGCAC
* *
23722837 TCAGT-CGATCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGGTCCCCCCTACGTGCTGTC
584 TCA-TCCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCAACCCGGTCCCCCCTACATGCTGTC
* * * **
23722901 GATCCTGCTGCCACAACCCTCAGTCT-G-G-TCTGATCTTGGACTGGGAATGAACTCTGTATGCT
648 GATCCTGCTACCACAACCCTCAGTCTGGTGATCTGATCTTAGACTGAGAATGAACTCCATATGCT
*
23722963 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTC-A-G-
713 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCACTCAACGA
* * * *
23723025 C-AGGCC-G-G-AGAGGCATAATGCG-CACGCCGAGGATCAACCT-GATCCC-CTTCTGCTTGCT
778 CAAGGCCGGCGTAGAGGCATAATGCGTCA-ACCGAGGATC-ACCTCGATCCCTC-TCTACGTCCT
* * * *
23723083 GTCAATCTCGCTGCCGGTCTTGCTACCACAACCCTCGATCCGACTGGGG
840 GCCAATCCCACTGCCGGTCCTGCTACCACAACCCTCGATCCGACTGGGG
***
23723132 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAATTGAGCGTGCAGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGTGCTCAGC
* * *
23723197 CGACCGGAGAGGCAAAATGCGTAAG-CTGGGGATCGACCCGGT-CCC--C--C---CT----AT-
66 CGACCGGAGAGGCAAAATGCGCAAGTC-GGGGATCAACCCGATACCCTACTGCATGCTGCCGATC
* ** * ** * * * * *
23723248 GTGCTATCAATCCTACTGTCACAACCCTTGGTCTGATCTAATGTTAGACTGGGAATGAACTCTGT
130 CTGCTATCGGTCCTACTGCCGTAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACTCCGT
* * * ** *
23723313 ATGCTTAGACTAGGG-ATGAACTCCATATGCCTAAGTCAACTCACAAAACGAGCGTGCGGGTGCT
195 ATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCT
* * *
23723377 CAGTAGGCCGAAGAGG
259 CAATCGACCGAAGAGG
23723393 CCGGTCAGAG
Statistics
Matches: 968, Mismatches: 146, Indels: 78
0.81 0.12 0.07
Matches are distributed among these distances:
855 1 0.00
856 116 0.12
857 4 0.00
861 2 0.00
864 1 0.00
866 1 0.00
868 6 0.01
869 169 0.17
870 3 0.00
872 1 0.00
873 5 0.01
878 1 0.00
879 1 0.00
881 1 0.00
882 84 0.09
883 1 0.00
886 1 0.00
887 226 0.23
888 1 0.00
889 1 0.00
890 1 0.00
891 10 0.01
892 53 0.05
895 1 0.00
898 1 0.00
900 1 0.00
901 10 0.01
902 85 0.09
903 9 0.01
904 169 0.17
905 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (888 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGTGCTCAGC
CGACCGGAGAGGCAAAATGCGCAAGTCGGGGATCAACCCGATACCCTACTGCATGCTGCCGATCC
TGCTATCGGTCCTACTGCCGTAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACTCCGTA
TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
ATCGACCGAAGAGGAAGAATGCATAAGCCAAGGATCGAACCGATCCCCCCTGCATAATGCCAATC
CTTGCTGGCCGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
AGTCAAACCCATGAAAGCTGAAGCGTTCGGACATTGAGCCAACCGGAGAGGCATAATGCACAAGC
CGAGGATCGACTCGGTCCCCCTCTACGTGCTACCGATCCCACTACCACAACACTCGGTTCAACTG
GGGCTTAGACATAGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGCCGTACGGGCACTC
ATCCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCAACCCGGTCCCCCCTACATGCTGTCGAT
CCTGCTACCACAACCCTCAGTCTGGTGATCTGATCTTAGACTGAGAATGAACTCCATATGCTTAG
ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCACTCAACGACAA
GGCCGGCGTAGAGGCATAATGCGTCAACCGAGGATCACCTCGATCCCTCTCTACGTCCTGCCAAT
CCCACTGCCGGTCCTGCTACCACAACCCTCGATCCGACTGGGG
Found at i:23723273 original size:355 final size:355
Alignment explanation
Indices: 23722753--23723393 Score: 931
Period size: 355 Copynumber: 1.8 Consensus size: 355
23722743 GATCCCACTG
* * *
23722753 CCACAACCCTCGGTTCAACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAACCAACCCAC
1 CCACAACCCTCGATCCAACTGGGGCTTAGACATAGAATGAACTCCATATGCCTAAACCAACCCAC
* * * * *
23722818 GAAACGGGCGTACTGGCGCTCAGTCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGG
66 GAAACGAGCGTACAGGCGCTCAGCCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCAACCCGG
* * * * * *
23722883 TCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCTGGTCTGATCTTGGACTGGGAA
131 TCCCCCCTACGTGCTATCAATCCTACTGCCACAACCCTCAGTCTGATCTAATCTTAGACTGGGAA
* * *
23722948 TGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGT
196 TGAACTCTGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCCACAAAACAAGCGT
*
23723013 GCGGGCACTCAGCAGGCCGGAGAGGCATAATGCGCACGCCGAGGATCAACCTGATCCCCTTCTGC
261 GCGGGCACTCAGCAGGCCGAAGAGGCATAATGCGCACGCCGAGGATCAACCTGATCCCCTTCTGC
23723078 TTGCTGTCAATCTCGCTGCCGGTCTTGCTA
326 TTGCTGTCAATCTCGCTGCCGGTCTTGCTA
* * *
23723108 CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC
1 CCACAACCCTCGATCCAACTGGGGCTTAGACATAGAATGAACTCCATATGCCTAAACCAACCCAC
** * * ** * *
23723173 GAATTGAGCGTGCAGGTGCTCAGCCGACCGGAGAGGCAAAATGCGTAAGCTGGGGATCGACCCGG
66 GAAACGAGCGTACAGGCGCTCAGCCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCAACCCGG
* * ** *
23723238 TCCCCCCTATGTGCTATCAATCCTACTGTCACAACCCTTGGTCTGATCTAATGTTAGACTGGGAA
131 TCCCCCCTACGTGCTATCAATCCTACTGCCACAACCCTCAGTCTGATCTAATCTTAGACTGGGAA
* *
23723303 TGAACTCTGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACTCACAAAACGAGCGT
196 TGAACTCTGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCCACAAAACAAGCGT
** *
23723368 GCGGGTGCTCAGTAGGCCGAAGAGGC
261 GCGGGCACTCAGCAGGCCGAAGAGGC
23723394 CGGTCAGAGA
Statistics
Matches: 247, Mismatches: 39, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
355 247 1.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (355 bp):
CCACAACCCTCGATCCAACTGGGGCTTAGACATAGAATGAACTCCATATGCCTAAACCAACCCAC
GAAACGAGCGTACAGGCGCTCAGCCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCAACCCGG
TCCCCCCTACGTGCTATCAATCCTACTGCCACAACCCTCAGTCTGATCTAATCTTAGACTGGGAA
TGAACTCTGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCCACAAAACAAGCGT
GCGGGCACTCAGCAGGCCGAAGAGGCATAATGCGCACGCCGAGGATCAACCTGATCCCCTTCTGC
TTGCTGTCAATCTCGCTGCCGGTCTTGCTA
Found at i:23723341 original size:26 final size:26
Alignment explanation
Indices: 23723291--23723342 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23723281 TGATCTAATG
**
23723291 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
23723317 TTAGACTAGGG-ATGAACTCCATATGC
1 TTAGACT-GGGAATGAACTCCATATGC
23723343 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:23723538 original size:26 final size:26
Alignment explanation
Indices: 23723500--23723552 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23723490 CCGATCCAAT
23723500 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
23723526 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
23723552 C
1 C
23723553 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:23723867 original size:157 final size:158
Alignment explanation
Indices: 23723526--23723867 Score: 451
Period size: 158 Copynumber: 2.2 Consensus size: 158
23723516 ACTTCGTATG
* * * *
23723526 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGTGCTCAA
*
23723590 CAGGTCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACTCGGTCCCCCCTACGTGCTGTCGATCC
65 CAGCTCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACTCGGTCCCCCCTACGTGCTGTCGATCC
* * *
23723655 TGCTGTCGTAACCCTCGGTCTGGTCTGAT
130 TGCTGCCGCAACCCTCGGTCTGGTCTCAT
* * * *
23723684 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGTGCTCA-A
* * * **
23723749 CA-CTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCTTGGT-CCCCCTGTGTGCTG-CTGATC
65 CAGCTCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACTCGGTCCCCCCTACGTGCTGTC-GATC
23723811 CTGCTGCCGCAACCCTCGGTCTGGTC-CATT
129 CTGCTGCCGCAACCCTCGGTCTGGTCTCA-T
*
23723841 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
23723868 TTAGACTAGG
Statistics
Matches: 162, Mismatches: 18, Indels: 9
0.86 0.10 0.05
Matches are distributed among these distances:
156 2 0.01
157 68 0.42
158 90 0.56
159 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGTGCTCAAC
AGCTCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACTCGGTCCCCCCTACGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTCTGGTCTCAT
Found at i:23723871 original size:26 final size:26
Alignment explanation
Indices: 23723841--23723893 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23723831 CTGGTCCATT
23723841 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGACTAGGG-ATGAACTCCATATG
*
23723867 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCATATG
23723893 C
1 C
23723894 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:23725199 original size:26 final size:26
Alignment explanation
Indices: 23725163--23725215 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23725153 CCGGTCTGAT
*
23725163 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23725189 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23725215 C
1 C
23725216 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23725834 original size:159 final size:158
Alignment explanation
Indices: 23725643--23726004 Score: 395
Period size: 159 Copynumber: 2.3 Consensus size: 158
23725633 GGACCAGCCC
* * * * * *
23725643 GATCCCACCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGATCCGGTCT-GATCTTAGATA-
1 GATCCC-CCCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGATCC-GACTGGAGCTTAGACAT
* * * *
23725706 GGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGTGGGCCCTGAGCCAGCCAGA
64 GG-AATGAAATCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGCCCTCAGCCAGCCAGA
* * * *
23725771 GAGGCATAATGCGCAAGCCAGGGATCGGCCT
128 GAGGAAGAATGCGCAAGACAGGGATCGACCT
* * * * *
23725802 GATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATG
1 GATCCCCC-CTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGATCCGACTGGAGCTTAGACATG
** * * * *
23725867 GAATGAAATCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAGCCGGTCGGAGA
65 GAATGAAATCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGCCCTCAGCCAGCCAGAGA
* *
23725932 GGAAGAATGTGCAAGACGGGGATCGACCT
130 GGAAGAATGCGCAAGACAGGGATCGACCT
* * * *
23725961 GGTCCCCCCTGCGAGCTACCGATCTTGCTGCCGTAACCCTCGAT
1 GATCCCCCCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGAT
23726005 TTGGTTAGAT
Statistics
Matches: 165, Mismatches: 35, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
158 34 0.21
159 129 0.78
160 2 0.01
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (158 bp):
GATCCCCCCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGATCCGACTGGAGCTTAGACATGG
AATGAAATCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGCCCTCAGCCAGCCAGAGAG
GAAGAATGCGCAAGACAGGGATCGACCT
Found at i:23726927 original size:26 final size:26
Alignment explanation
Indices: 23726886--23726938 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23726876 CCGGTTTGAT
*
23726886 CTTAGACTGGGAATGAACGCTGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
*
23726912 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACGCCGTATG
23726938 C
1 C
23726939 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCGTATG
Found at i:23727281 original size:26 final size:26
Alignment explanation
Indices: 23727229--23727281 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23727219 CCAGTTTGAT
* *
23727229 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
**
23727255 CTTAGACTGGGGTTGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
23727281 C
1 C
23727282 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:23729133 original size:158 final size:156
Alignment explanation
Indices: 23728633--23729133 Score: 434
Period size: 158 Copynumber: 3.2 Consensus size: 156
23728623 ACTCCATTTG
* * * * * * *
23728633 CTTAGACTTGGAATGAACTCCGTGTGCCTAAGCCAACCCACGAAACGAGCTTACGGGTGCTGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGTGCTGAAC
* * * * * * * *
23728698 TGGTCGGAGAGGCAGAATGCGTAAGCCTAGAAACGACCCGGTCCCCCCTGCATGTTGTCAATCCT
66 CGATCGGAGAGGCAGAATGCGTAAGCC-GGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATCCT
* * * * *
23728763 GCAGCTGCAACCCTCGATTCAGTTTGAT
130 GCTGCCGCAACCCTCG-GTCCGGTTGAT
* ** * * *
23728791 CTTAGATTGGGAATGAACTCTTTATGCATAAGTCAACCCATGAAATGAGG-ATGCGGGTGCTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATG-GGCATGCGGGTGCTGAA
* * * * * * **
23728855 CCGATCGGAGAGGCATAATGCGCAAGCCGGGATC-AGTCCGGTCCCCTTCTGTGTGCTACCGGTC
65 CCGATCGGAGAGGCAGAATGCGTAAGCCGGGATCGA-CCCGGTCCCC-CCTGCGTGCTGCCAATC
* * * * **
23728919 CCGTTGCCACAACCCTCGGTCTGGTTGGGG
128 CTGCTGCCGCAACCCTCGGTCCGGTT-GAT
* * * *
23728949 CTTAGACAT-GGAATAAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGTGCTGAA
* * *
23729013 CCGATCGGGGAGGCAGAATGCGTAA-CTCGGGGATCGACCCAGTCCCCCCTGCGTGCTGCCTATC
65 CCGATCGGAGAGGCAGAATGCGTAAGC-C-GGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATC
* *
23729077 CTGGTCCCGCAACCCTCGGTCCGGTCTGAT
128 CTGCTGCCGCAACCCTCGGTCCGGT-TGAT
*
23729107 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
23729134 TTAGACTGGG
Statistics
Matches: 264, Mismatches: 68, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 21 0.08
158 224 0.85
159 17 0.06
160 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGTGCTGAAC
CGATCGGAGAGGCAGAATGCGTAAGCCGGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATCCTG
CTGCCGCAACCCTCGGTCCGGTTGAT
Found at i:23729158 original size:26 final size:26
Alignment explanation
Indices: 23729107--23729159 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23729097 CCGGTCTGAT
* * *
23729107 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
*
23729133 CTTAGACTGGGGATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
23729159 C
1 C
23729160 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:23729513 original size:26 final size:26
Alignment explanation
Indices: 23729475--23729524 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
23729465 CCAATCCGAT
*
23729475 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23729501 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
23729525 CGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23737155 original size:26 final size:26
Alignment explanation
Indices: 23737126--23737178 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23737116 CTGGTTTGAT
* *
23737126 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
23737152 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
23737178 C
1 C
23737179 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:23737544 original size:26 final size:26
Alignment explanation
Indices: 23737506--23737558 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23737496 CTGGTCTGAT
* *
23737506 CTTAGACTAGGAATGAATTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
23737532 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
23737558 C
1 C
23737559 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:23737903 original size:159 final size:158
Alignment explanation
Indices: 23737531--23737964 Score: 460
Period size: 159 Copynumber: 2.7 Consensus size: 158
23737521 AATTTCGTAT
* *
23737531 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC-AGAACGAGCATGTGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA-AACGAGCGTGCGGGCGCTCA
* * * * *
23737595 GCCAGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGGTCCCCCCTGTGTGCTATCGATC
65 ACCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATC
** ** * *
23737660 CTGCTGTCGTAACCCTCGATCCTGTCTGA
130 CCACTACCATAACCCTCGATCCTGACTGA
* * * * *
23737689 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
23737753 ACCAGTTGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCTGGTCCCTCGCTGCGTGCTGCCGGT
65 ACCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCC-CCCTGCGTGCTACCGAT
* *
23737818 CCCACTACCATAACCCTCGGTCC-GACTGGG
129 CCCACTACCATAACCCTCGATCCTGACT-GA
* * * * *
23737848 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCATCCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * * *
23737913 CCGGCCAGAGAGGCAGAATGCGCAAGTCAGGGATCAACCCGATCCCCCCTGC
66 CCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGC
23737965 ATGTTGTCGA
Statistics
Matches: 222, Mismatches: 49, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 101 0.45
159 119 0.54
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCC
CACTACCATAACCCTCGATCCTGACTGA
Found at i:23739047 original size:158 final size:158
Alignment explanation
Indices: 23738754--23739057 Score: 362
Period size: 158 Copynumber: 1.9 Consensus size: 158
23738744 AACTTTGTAT
* * * *
23738754 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTATGGGCGCTGAG
1 GCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACGAAACGAGTGCATGGGCGCTCAG
* * * * ** *
23738819 CCGGCCGAAGAGGCATAATGCGCAAACCGGGTTCGGCTCGATCCCCCTCTGCATGCTGCCGATCC
66 CAGGCCGAAGAGGCAGAATGCGCAAACCGGGATCGGCCCGATCCCCCTCTGCACACTACCGATCC
23738884 CGCTGCCACAACCCTCAGTCTGGCTGGG
131 CGCTGCCACAACCCTCAGTCTGGCTGGG
* *
23738912 GCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCATGATACG-G-GCATGCGGGCGCTC
1 GCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACGAAACGAGTGCAT--GGGCGCTC
* * * * * *
23738975 AGCAGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGCACTACCGA
64 AGCAGGCCGAAGAGGCAGAATGCGCAAACC-GGGATCGGCCCGATCCCCCTCTGCACACTACCGA
* **
23739039 TCCTGCTGCCGTAACCCTC
128 TCCCGCTGCCACAACCCTC
23739058 GATCCGATCA
Statistics
Matches: 121, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
156 3 0.02
157 1 0.01
158 101 0.83
159 16 0.13
ACGTcount: A:0.22, C:0.33, G:0.28, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACGAAACGAGTGCATGGGCGCTCAG
CAGGCCGAAGAGGCAGAATGCGCAAACCGGGATCGGCCCGATCCCCCTCTGCACACTACCGATCC
CGCTGCCACAACCCTCAGTCTGGCTGGG
Found at i:23739350 original size:342 final size:341
Alignment explanation
Indices: 23738737--23739708 Score: 857
Period size: 342 Copynumber: 2.8 Consensus size: 341
23738727 ATCTTACTCC
* * *
23738737 GGGAATGAACTTTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
1 GGGAATGAACTCTATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACA
* ** * * * ** *
23738802 AGTGTATGGGCGCTGAGCCGGCCGAAGAGGCATAATGCGCAAACCGGGTTCGGCTCGATCCCCCT
66 AGCGTACAGGCGCTCAGCCGACCGAAGAGGCATAATGCGCAAACCGGGATCAACCCGATCCCCCT
**
23738867 CTGCATGCTGCCGATCCCGCTGCCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACA
131 CTGCATGCTGCCGATCCCGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACA
** * * * *
23738932 CCCTATGCCTAAGCCAACCCATGATACGGGCATGCGGGCGCTCAGCAGGTCGGAGAGGCAGAATG
196 CCCTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGCAGCTCGGAGAGACAGAATG
*
23738997 CGTAAGCCGGGGATCGGCCCGGTCCCCCCTGCGCACTACCGATCCTGCTGCCGTAACCCTCGATC
261 CGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGCACTACCGATCCTGCTGCCGTAACCCTCGATC
23739062 CGATCAATCTTAGACT
326 CGATCAATCTTAGACT
* * **
23739078 GGGAATGAACTCTATATGCTTAGAC-TGGGGATGAACTCCGTGTGCCTAAGTGAACCCACGAAAC
1 GGGAATGAACTCTATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
* * * * * *
23739142 AAGCGTGCAGGTGCTCAGCCGACCGGAGAGGCATAATGCGTAAGCCGGGGATCAACCCGGTCCCC
65 AAGCGTACAGGCGCTCAGCCGACCGAAGAGGCATAATGCGCAAACC-GGGATCAACCCGATCCCC
* * * * * *
23739207 CTCTGCGTGCTGCTGGTCCTGCTGCCACAACCCTC-GATCCAGTTGGGGCTTAGAGATGGAATGA
129 CTCTGCATGCTGCCGATCCCGCTGCCACAACCCTCAG-TCCAGCTGGGGCTTAGACATGGAATGA
* * * *
23739271 ACTCCGTATGGCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGTC-GACT-GGAGAGACA
193 ACACCCTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAG-CAG-CTCGGAGAGACA
* ** * **
23739334 GAATGCGCAAGCCGGGGATCGGCCAGGTTTGCCCCTACGTGCTACCGATCCTGCTACTGGTCCTG
256 GAATGCGCAAGCCGGGGATCGGCCCGG-TCCCCCCTGCGCACTACCGATCCTG---CT-G--C--
* * *
23739399 CTGTTGCAACCCTCGATCCGGTCCGATCATAGACT
312 C-G-T--AACCCTCGATCCGAT-CAATCTTAGACT
** * *
23739434 GGGAATGAACTCCGTATGCTTAGACATGGAAT-AACTCCGTATGCCTAAGCCAACCCAGGAAACG
1 GGGAATGAACTCTATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACA
* * ** ** * * * * * ** * *
23739498 GGTGTATGGGCGCTCAGCCGGTCGAAGAGGCAAAATGCCCAAGCTGAGAATCGGCTCGGTCCCCC
66 AGCGTACAGGCGCTCAGCCGACCGAAGAGGCATAATGCGCAAACCG-GGATCAACCCGATCCCCC
* ** * * * * *
23739563 -CTGCATGCTACCGATCCTACTGCCGCAACCCTC-GATCCGATCT-GAGCCTAGA-TTGGGAATG
130 TCTGCATGCTGCCGATCCCGCTGCCACAACCCTCAG-TCC-AGCTGGGGCTTAGACAT-GGAATG
* * * * ** * * *
23739624 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCAAC-CAGAGAGGCA
192 AACACCCTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAG-CAGCTCGGAGAGACA
* **
23739688 GGATGCGCAAGCTTGGGATCG
256 GAATGCGCAAGCCGGGGATCG
23739709 AACACGTGGT
Statistics
Matches: 509, Mismatches: 97, Indels: 37
0.79 0.15 0.06
Matches are distributed among these distances:
340 1 0.00
341 92 0.18
342 141 0.28
343 22 0.04
346 2 0.00
347 1 0.00
349 1 0.00
351 1 0.00
352 1 0.00
353 2 0.00
354 118 0.23
355 89 0.17
356 37 0.07
357 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (341 bp):
GGGAATGAACTCTATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACA
AGCGTACAGGCGCTCAGCCGACCGAAGAGGCATAATGCGCAAACCGGGATCAACCCGATCCCCCT
CTGCATGCTGCCGATCCCGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACA
CCCTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGCAGCTCGGAGAGACAGAATG
CGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGCACTACCGATCCTGCTGCCGTAACCCTCGATC
CGATCAATCTTAGACT
Found at i:23740341 original size:26 final size:26
Alignment explanation
Indices: 23740303--23740355 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23740293 GGCTCAAAAT
*
23740303 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23740329 CTTAGACAT-GGAATGACCTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23740355 C
1 C
23740356 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23741554 original size:159 final size:157
Alignment explanation
Indices: 23741208--23741675 Score: 376
Period size: 159 Copynumber: 3.0 Consensus size: 157
23741198 AACTCTGTAT
*** * * * **
23741208 GCTTAGACATGGAATGAACTGTGTATGCCTAAGCCAACCCATGAAA-TGAGTGTGA-GGGGGCTC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAG-GCGT-ACGGGCACTC
* * * * * * * * * * * * **
23741271 AGTCAGCCGGAGAGGTAGAATGCACAAGCCGAGGATCAGCTCGGT-CCCCCTACGTGTTGTCGAT
64 AGCCAGTCAGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTACCGAT
* * *
23741335 CTTGCTGCCGCAACCCTCGGTCCGATCT-GA
129 C-CGCTGCCACAACCCTCGGTCCGA-CTGGG
** * *** * * ** *
23741365 TTTTAGAC-TGGGAATTAACTAAGTATGCCTAAGTCAACCCACGAAAC-GAGCGTGCGGGCGTTG
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAG-GCGTACGGGCACTC
* * ** * *
23741428 AGCCAGTC-GAAGAGGCATAATGCGCAAGCCGGGGATTGGCGTGGTCCCCTTCTGCGTGCTACCG
64 AGCCAGTCAG-AGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCC-CCTGCGTGCTACCG
23741492 ATCC-CATAGCCACAACCCTCGGTCCGACTGGG
127 ATCCGC-T-GCCACAACCCTCGGTCCGACTGGG
23741524 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTACGGGCACTCAG
* *
23741589 CCGGTCAGAGAGGCAAAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCC
66 CCAGTCAGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCC
*
23741654 TGCTGCCATAACCCTCGGTCCG
131 -GCTGCCACAACCCTCGGTCCG
23741676 GTGTAATCTT
Statistics
Matches: 247, Mismatches: 50, Indels: 27
0.76 0.15 0.08
Matches are distributed among these distances:
156 2 0.01
157 81 0.33
158 40 0.16
159 120 0.49
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTACGGGCACTCAG
CCAGTCAGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCC
GCTGCCACAACCCTCGGTCCGACTGGG
Found at i:23741724 original size:26 final size:26
Alignment explanation
Indices: 23741683--23741735 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23741673 CCGGTGTAAT
**
23741683 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
23741709 CTTAGACTAGGG-ATGAACACCGTATG
1 CTTAGACT-GGGAATGAACACCGTATG
23741735 C
1 C
23741736 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:23742362 original size:171 final size:171
Alignment explanation
Indices: 23742070--23742440 Score: 415
Period size: 171 Copynumber: 2.2 Consensus size: 171
23742060 GAACTCTGTA
* * ** *
23742070 TGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCCTGAAACGAGCATGCGGGCACTCA
1 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGCATGCGGGCACTCA
* ** * * * *
23742135 GTCGACCGTAGAGGCTTAATGCGTAAGTCGAGGATAAGCCCTGTCCCCCTCTGCGTGCTATTGAT
66 GTCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATAAGCCCGGTCCCCCTCTGCGTGCTATCGAT
23742200 CCCGCTGCCAATCTTGTTGCCACAACCCTCGGTTCGACTGG
131 CCCGCTGCCAATCTTGTTGCCACAACCCTCGGTTCGACTGG
* * *
23742241 TGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGCGTGCGGGCGCTT
1 TGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGCATGCGGGCACTC
* * *
23742305 AGTCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCTCGGTCTCCCC-CTGCGTGCTATCG
65 AGTCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATAAGCCCGGTC-CCCCTCTGCGTGCTATCG
* *** * * ** * * * *
23742369 ATCCTGCTGCTGGTCCTGTTACTGCAACCCTCGGTCTAGTCCGA
129 ATCCCGCTGCCAATCTTGTTGCCACAACCCTCGGT-TCGACTGG
*
23742413 T-CTTAGACTAGGAATGAACTCCGTATGC
1 TGCTTAGACTGGGAATGAACTCCGTATGC
23742441 TTACACATGG
Statistics
Matches: 166, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
170 1 0.01
171 155 0.93
172 10 0.06
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Consensus pattern (171 bp):
TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGCATGCGGGCACTCA
GTCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATAAGCCCGGTCCCCCTCTGCGTGCTATCGAT
CCCGCTGCCAATCTTGTTGCCACAACCCTCGGTTCGACTGG
Found at i:23743532 original size:158 final size:158
Alignment explanation
Indices: 23743265--23743758 Score: 467
Period size: 158 Copynumber: 3.1 Consensus size: 158
23743255 ACTCCGTATG
* * * ** * *
23743265 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGCGCGGGCGCTTAG
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCAG
* ** * * * ** * * * *
23743329 TCGGTCGGAGAGGTAAAATGTGTAAGCC-GAGGACTGACCCGGTCCCCCCTATGTGCTGTCGATC
65 CCGACCGAAGAGGCAGAATACGCAAGCCAG-GGATTGGCCCGGTCCCCCCTACGTGCTGTCGATC
*
23743393 CTACTGCCGCAACCCTCGGTCTGGTCTGAT
129 CTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * * * *
23743423 CATAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCGCGAAACAAGCATGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCAGC
* * * *
23743488 CGGCCGAAGAGGCATAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCTCTACGTGCTGTCGGTCC
66 CGACCGAAGAGGCAGAATACGCAAGCCAGGGATTGGCCCGGTCCCCC-CTACGTGCTGTCGATCC
* * * * **
23743553 CGCTACCACAACCCTCGGTCTAG-CTGGGG
130 TGCTGCCGCAACCCTCGGTCTGGTCT-GAT
* ** * *
23743582 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCAG
** * * * *
23743646 CCGACCGAAGAGGCAGAATACGCAAGCTGGGGATTGGCCCGGTCCACCCTGCGTGCTATTGATCC
65 CCGACCGAAGAGGCAGAATACGCAAGCCAGGGATTGGCCCGGTCCCCCCTACGTGCTGTCGATCC
* *
23743711 TGCTGCCGTAACCCTCGAT-TCGGTCTGAT
130 TGCTGCCGCAACCCTCGGTCT-GGTCTGAT
23743740 CTTAGACTGGGAATGAACT
1 CTTAGACTGGGAATGAACT
23743759 TCGTATGTTG
Statistics
Matches: 271, Mismatches: 57, Indels: 16
0.79 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 136 0.50
159 131 0.48
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCAGC
CGACCGAAGAGGCAGAATACGCAAGCCAGGGATTGGCCCGGTCCCCCCTACGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTCTGGTCTGAT
Found at i:23743612 original size:159 final size:158
Alignment explanation
Indices: 23743264--23743695 Score: 465
Period size: 159 Copynumber: 2.7 Consensus size: 158
23743254 AACTCCGTAT
* * * *
23743264 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGCGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
23743329 TCGGTCGGAGAGGTAAAATGTGTAAGCCGAGGACTGACCCGGTCCCCC-CTATGTGCTGTCGATC
66 CCGGCCGAAGAGGCAAAATGCGCAAGCCG-GGATTGGCCCGGTCCCCCTCTACGTGCTGTCGATC
* * * *
23743393 CTACTGCCGCAACCCTCGGTCTGGTCTGA
130 CCACTACCACAACCCTCGGTCTAGTCTGA
* * * * * * * * *
23743422 TCATAGAC-TGGGAATGAACTCTATATGCCTAAGTCAACCCGCGAAACAAGCATGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* *
23743486 GCCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCTCTACGTGCTGTCGGT
65 GCCGGCCGAAGAGGCAAAATGCGCAAGCC-GGGATTGGCCCGGTCCCCCTCTACGTGCTGTCGAT
* *
23743551 CCCGCTACCACAACCCTCGGTCTAG-CTGGG
129 CCCACTACCACAACCCTCGGTCTAGTCT-GA
* *
23743581 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
23743646 CCGACCGAAGAGGCAGAATACGCAAGCTGGGGATTGGCCCGGTCCACCCT
66 CCGGCCGAAGAGGCAAAATGCGCAAGC-CGGGATTGGCCCGGTCC-CCCT
23743696 GCGTGCTATT
Statistics
Matches: 223, Mismatches: 44, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
157 1 0.00
158 90 0.40
159 127 0.57
160 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAAAATGCGCAAGCCGGGATTGGCCCGGTCCCCCTCTACGTGCTGTCGATCC
CACTACCACAACCCTCGGTCTAGTCTGA
Found at i:23744511 original size:26 final size:26
Alignment explanation
Indices: 23744473--23744522 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
23744463 GGCTCAAACT
23744473 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23744499 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
23744523 CGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23744831 original size:158 final size:159
Alignment explanation
Indices: 23744498--23744845 Score: 412
Period size: 159 Copynumber: 2.2 Consensus size: 159
23744488 AACTCCGTAT
* * * * **
23744498 GCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAGCCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
23744563 CCGATCGGAGAGGCAGAATGCACAAGCCGGGAATCAACCCGATCCCCCTCTGCATGCTGCCGATC
66 CCGATCGGAGAGGCAGAATGCACAAGCCGGGAATCAACCCGATCCCCCTCTGCATGCTGCCGATC
* ***
23744628 CCGCTACCACAACCCTCGGTCTGGCTGGG
131 CCGCTACCACAACCCTCGGTCCGGCTCAA
* * * *
23744657 GCTTAGACATGAAATGAACTCCCTATGCTTAAGCCAACCCACGAAACGGGTGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * * * * * * * * *
23744722 CCGGTCGGGGAGGTAGAATGCGCAAGTCGGGGATCAGCCTGGT-CCCTTCTGCATGCTGTCGATC
66 CCGATCGGAGAGGCAGAATGCACAAGCCGGGAATCAACCCGATCCCCCTCTGCATGCTGCCGATC
* * *
23744786 CTGCTACCGCAACCCTCGGTCCGGTTCAA
131 CCGCTACCACAACCCTCGGTCCGGCTCAA
*
23744815 TCTTAGAC-TGGGAATGAACTCCGTATGCTTA
1 GCTTAGACAT-GGAATGAACTCCGTATGCTTA
23744846 GACTGGGGAT
Statistics
Matches: 157, Mismatches: 31, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
157 1 0.01
158 67 0.43
159 89 0.57
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
CCGATCGGAGAGGCAGAATGCACAAGCCGGGAATCAACCCGATCCCCCTCTGCATGCTGCCGATC
CCGCTACCACAACCCTCGGTCCGGCTCAA
Found at i:23744845 original size:26 final size:26
Alignment explanation
Indices: 23744816--23744868 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23744806 CCGGTTCAAT
23744816 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23744842 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23744868 C
1 C
23744869 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23745644 original size:326 final size:325
Alignment explanation
Indices: 23745052--23745691 Score: 985
Period size: 326 Copynumber: 2.0 Consensus size: 325
23745042 GTGAAGTTTC
**
23745052 TGGCAAGACAACCCGTTTTCTAATTTTCAAAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTA
1 TGGCAAGACAACCCGTTTTCTAATTTTCAAAATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTA
** * * *
23745117 AAATTTTTTAGAAAGAGTTCTATTCCCAAATTTGGCAGAGGTGATCCTTTTATTTTGGTTGGCAT
66 AAATTTTTTAGAAAGAGTTCTAGCCCCAAATTTGGCAGAGGAGATCCTTGTATTTTGATTGGCAT
* * *
23745182 GCATAAAAAAATTCAGCCAAAAACTCGAGGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTC
131 GCAGAAAAAAATTCAGCCAAAAACTCGAAGTGGAGAAGATTTTGTGACCGTTAGAAAAAAGTGTC
* *
23745247 CCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGG
196 CCTATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTATAAAATCCCAAATGCTCTTTAAGGG
*
23745312 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGTCATGCCAAG
261 GGTGTGAGTTCTCAAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGTCATGCCAAG
** * ** *
23745377 TGGCAAGATGACCCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTA
1 TGGCAAGACAACCCGTTTTCTAATTTTCAAAATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTA
* * * * *
23745442 AAATTCTTTTGGAAAGAGTTTTGGCCCCAAATTTGGTAGAGGAGATCCTTGTATTTTTATTGGCA
66 AAATT-TTTTAGAAAGAGTTCTAGCCCCAAATTTGGCAGAGGAGATCCTTGTATTTTGATTGGCA
* * *
23745507 TGCAGAAAAAAATTCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTTACTGTTAGAAAAAAGTGT
130 TGCAGAAAAAAATTCAGCCAAAAACTCGAAGTGGAGAAGATTTTGTGACCGTTAGAAAAAAGTGT
* *
23745572 -CGTCATTTCAGACACTTTAACGGCTACTGGTAGCAAACCTATAAAATCCCAAATGCTCTTTAAG
195 CCCT-ATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTATAAAATCCCAAATGCTCTTTAAG
*
23745636 GGGGTGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
259 GGGGTGTGAGTTCTCAAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
23745692 ACCAGCACCC
Statistics
Matches: 283, Mismatches: 30, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
325 64 0.23
326 219 0.77
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (325 bp):
TGGCAAGACAACCCGTTTTCTAATTTTCAAAATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTA
AAATTTTTTAGAAAGAGTTCTAGCCCCAAATTTGGCAGAGGAGATCCTTGTATTTTGATTGGCAT
GCAGAAAAAAATTCAGCCAAAAACTCGAAGTGGAGAAGATTTTGTGACCGTTAGAAAAAAGTGTC
CCTATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTATAAAATCCCAAATGCTCTTTAAGGG
GGTGTGAGTTCTCAAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGTCATGCCAAG
Found at i:23746240 original size:26 final size:26
Alignment explanation
Indices: 23746204--23746256 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23746194 CCTATCTGAT
*
23746204 CTTAGGCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
23746230 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
23746256 C
1 C
23746257 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23746721 original size:158 final size:158
Alignment explanation
Indices: 23746380--23746743 Score: 446
Period size: 158 Copynumber: 2.3 Consensus size: 158
23746370 CCTACTACCG
* * * *
23746380 CAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCCATGAA
1 CAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * *
23746445 ACGAGCGTGCGGGCGCTCAGCCAGCCGAAGAGGCAGAATGCTCAAGCTGGGGATCGGCCCGTTCC
66 ACGAGCGTGCGGGCACTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCTGGGGACCGGCCCGGTCC
*
23746510 CTCATGCGTGCTACCGATCTAGCTGCCA
131 CCCATGCGTGCTACCGATCTAGCTGCCA
* ** *
23746538 CAACCCTCGGTCCGG-CTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
1 CAACCCTCGGTCCGGTC-CGATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * * * *
23746601 AAATGGGCGTGCGGGCACTCAGCCAGCCGGAGGGGTAGAATGCGCAAGCTGGGGACCGGCCTGGT
64 AAACGAGCGTGCGGGCACTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCTGGGGACCGGCCCGGT
* ** * *
23746666 CCCCCCTGCGTGCTGTCGATCCT-GCTGTCG
129 CCCCCATGCGTGCTACCGAT-CTAGCTGCCA
* *
23746696 TAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGC
1 CAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGC
23746744 TTAGACTGGG
Statistics
Matches: 171, Mismatches: 30, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
157 1 0.01
158 166 0.97
159 4 0.02
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.18
Consensus pattern (158 bp):
CAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
ACGAGCGTGCGGGCACTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCTGGGGACCGGCCCGGTCC
CCCATGCGTGCTACCGATCTAGCTGCCA
Found at i:23746746 original size:26 final size:26
Alignment explanation
Indices: 23746717--23746768 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23746707 CCGGTCCGAT
23746717 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
23746743 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
23746769 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:23746899 original size:513 final size:514
Alignment explanation
Indices: 23745890--23747004 Score: 1431
Period size: 513 Copynumber: 2.2 Consensus size: 514
23745880 TCTGTATCCC
* * * * * *
23745890 TAGACATGGAATGAATTTCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAACCG
1 TAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * *
23745955 GTTGGAGAGGCAGAATGCACAAG-TCGGGGATCGGCTCGGTCCCCCTCTTCGTGCTGCCGGTCAC
66 GTCGGAGAGGCAGAATGCACAAGCTCGGGGATCGGCTCCGTCCCCCTCTGCGTGCTACCGATCAC
* *
23746019 ACTACCACAACCCTCTCTCCAGTTGGGGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACC
131 ACTACCACAACCCTCGCTCCAGCTGGGGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACC
* *
23746084 CACGAAATGGGCGTGCGGGCGCTCAACCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCC
196 CACGAAATGGGCGTGCGGGCACTCAACCGACCGGAGAGGTAGAATGCGCAAGCCGGGGACCGGCC
* * * * * * * *
23746149 TGGTCCCCCCTGCGTGTTGCCGATCTTGCTGTTGCAACCCTCGGTCCTATCTGATCTTAGGCTGG
261 TGGTCCCCCCTGCGTGCTGCCGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTAG
* *
23746214 GAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG
326 GAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGACTAAGTCAACCCACGAAACGAG
* * *
23746279 CGTGCGGACGCTCAGTCTACCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGTCCGATCCACCCC
391 CGTGCGGACGCTCAGCCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGATCCACCCC
* * * *
23746344 TGCGGGCTACCGATCCTGCTACTGGTCCTACTACCGCAACCCTCGGTCCAG-TCCGATCT
456 TGCGGGCTACCAATCCTGCTACTGGTCCTACTACCACAACCCTCGGTCCGGCT-CGAGCT
23746403 TAGAC-TGGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
1 TAGACAT-GGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
* * * * *
23746467 AGCCGAAGAGGCAGAATGCTCAAGCT-GGGGATCGGC-CCGT-TCCCTCATGCGTGCTACCGATC
65 GGTCGGAGAGGCAGAATGCACAAGCTCGGGGATCGGCTCCGTCCCCCTC-TGCGTGCTACCGATC
* * * *
23746529 TA-GCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
129 -ACACTACCACAACCCTCGCTCCAGCTGGGGCTTAGACATGGAATGAACT-CCTATGCCTAAGCC
* * *
23746593 AACCCACGAAATGGGCGTGCGGGCACTCAGCC-AGCCGGAGGGGTAGAATGCGCAAGCTGGGGAC
192 AACCCACGAAATGGGCGTGCGGGCACTCAACCGA-CCGGAGAGGTAGAATGCGCAAGCCGGGGAC
* * *
23746657 CGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGTAACCCTCGATCCGGTCCGATCTTAG
256 CGGCCTGGTCCCCCCTGCGTGCTGCCGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAG
* *
23746722 ACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGACTAAGTCAACCCATGAA
321 ACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGACTAAGTCAACCCACGAA
* ** * * * *
23746787 ACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCATAATGCGTAAGCTGGGGATTAGCCCGATCC
386 ACGAGCGTGCGGACGCTCAGCCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGATCC
* * * ** * * * * *
23746852 -CCTTCTGCGTGCTACCAATCTTG-TTGTCGGTCCTGCTGCCACAACCCTCGGTTCGGCTGGGGC
451 ACC-CCTGCGGGCTACCAATCCTGCTACT-GGTCCTACTACCACAACCCTCGGTCCGGCTCGAGC
23746915 T
514 T
* * ** * *
23746916 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAGCCG
1 TAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
*
23746981 GTCGGAGAGGCAGAATGCGCAAGC
66 GTCGGAGAGGCAGAATGCACAAGC
23747005 CAAGGATCGA
Statistics
Matches: 516, Mismatches: 76, Indels: 20
0.84 0.12 0.03
Matches are distributed among these distances:
511 5 0.01
512 62 0.12
513 446 0.86
514 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (514 bp):
TAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
GTCGGAGAGGCAGAATGCACAAGCTCGGGGATCGGCTCCGTCCCCCTCTGCGTGCTACCGATCAC
ACTACCACAACCCTCGCTCCAGCTGGGGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACC
CACGAAATGGGCGTGCGGGCACTCAACCGACCGGAGAGGTAGAATGCGCAAGCCGGGGACCGGCC
TGGTCCCCCCTGCGTGCTGCCGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTAG
GAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGACTAAGTCAACCCACGAAACGAG
CGTGCGGACGCTCAGCCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGATCCACCCC
TGCGGGCTACCAATCCTGCTACTGGTCCTACTACCACAACCCTCGGTCCGGCTCGAGCT
Found at i:23747540 original size:11 final size:11
Alignment explanation
Indices: 23747524--23747560 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
23747514 GCTCTCCAGT
*
23747524 GATGCTCTGAC
1 GATGCTCCGAC
23747535 GATGCTCCGAC
1 GATGCTCCGAC
23747546 GATGCTCCGAC
1 GATGCTCCGAC
23747557 GATG
1 GATG
23747561 GTTCCCCGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.22
Consensus pattern (11 bp):
GATGCTCCGAC
Found at i:23748002 original size:26 final size:26
Alignment explanation
Indices: 23747973--23748025 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23747963 CCGGTCCGAT
23747973 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
23747999 CTTAGACTGGGGATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23748025 C
1 C
23748026 CTAATTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23748210 original size:26 final size:26
Alignment explanation
Indices: 23748181--23748233 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23748171 CTGGTCCGAT
23748181 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
23748207 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23748233 C
1 C
23748234 CTATGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23748561 original size:159 final size:158
Alignment explanation
Indices: 23748206--23748612 Score: 435
Period size: 159 Copynumber: 2.6 Consensus size: 158
23748196 AACTCCGTAT
* * * *
23748206 GCTTAGACATGGAATGAACTCCGTATGCCTATGCCAACCCACGAAACGAGCGTAT-GAGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGT-TCGGGCGCTCA
* ** *
23748270 G-TCGATCGGAGAGGCAGAATGTACAAATCGGGGATTGACCTTGTCCCCCCTGTGTGCTGTCGAT
65 GCT-GATCGGAGAGGCAGAATGTACAAATCGGGGATTGACCTGGTCCCCCCTACGTGCTGCCGAT
* * * * *
23748334 CCTGCTGTCGCAACCCTCGGTCTGGTCCGA
129 CCCGCTGCCACAACCCTCGATCTGGTCAGA
* * * *
23748364 TCTTAGAC-TGTGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGAGCTGA
1 GCTTAGACATG-GAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTTCGGGCGCTCA
* ** *
23748428 GCTGATCGGAGAGGCATAATGT-GTAAGCTGGGGATTGACCTGGTCCCCCTCTACGTGCTGCCGA
65 GCTGATCGGAGAGGCAGAATGTACAAATC-GGGGATTGACCTGGTCCCCC-CTACGTGCTGCCGA
* *
23748492 TCCCGCTGCCACAACCCTCGATCTGGTTAGG
128 TCCCGCTGCCACAACCCTCGATCTGGTCAGA
* ** ** * *
23748523 GCTTAGACATGGAATGAACTCCCTACACCTAAGCCAACCTGCGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTTCGGGCGCTCAG
* * * *
23748588 CCGGTCGGAGAGGCAGCATGCACAA
66 CTGATCGGAGAGGCAGAATGTACAA
23748613 GCCGGTGATC
Statistics
Matches: 201, Mismatches: 41, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
157 6 0.03
158 89 0.44
159 103 0.51
160 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTTCGGGCGCTCAG
CTGATCGGAGAGGCAGAATGTACAAATCGGGGATTGACCTGGTCCCCCCTACGTGCTGCCGATCC
CGCTGCCACAACCCTCGATCTGGTCAGA
Found at i:23748699 original size:158 final size:158
Alignment explanation
Indices: 23748207--23748706 Score: 432
Period size: 158 Copynumber: 3.2 Consensus size: 158
23748197 ACTCCGTATG
* * ** * * ** * * *
23748207 CTTAGACATGGAATGAACTCCGTATGCCTATGCCAACCCACGAAACGAGCGTATGAGCGCTCAGT
1 CTTAGACAGGGAATGAACTCCATACACCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAGC
* ** * ** **
23748272 CGATCGGAGAGGCAGAATGTACAAATCGGGGATTGACCTTGTCCCCC-CTGTGTGCTGTCGATCC
66 CGATCGGAGAGGCAGAATGCACAAGCCGGGGATAGACCCGGTCCCCCTCTACGTGCTGTCGATCC
*
23748336 TGCTGTCGCAACCCTCGGTCTGGTCCGAT
131 TGCTGTCGCAACCCTC-GTCTGGTCTGAT
* * ** * * *
23748365 CTTAGACTGTGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGAGCTGAGC
1 CTTAGACAGGGAATGAACTCCATACACCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAGC
* * *** * * * *
23748430 TGATCGGAGAGGCATAATGTGTAAGCTGGGGATTGACCTGGTCCCCCTCTACGTGCTGCCGATCC
66 CGATCGGAGAGGCAGAATGCACAAGCCGGGGATAGACCCGGTCCCCCTCTACGTGCTGTCGATCC
* * * **
23748495 CGCTGCCACAACCCTCGATCTGGT-TAGGG
131 TGCTGTCGCAACCCTCG-TCTGGTCT-GAT
* * ** * *
23748524 CTTAGACATGGAATGAACTCCCTACACCTAAGCCAACCTGCGAAATGGGCGTGCGGGCGCTCAGC
1 CTTAGACAGGGAATGAACTCCATACACCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAGC
* * * * *
23748589 CGGTCGGAGAGGCAGCATGCACAAGCCGGTGATCAG-CCCGGTTCCTCT-TACGTGCTGTCGATC
66 CGATCGGAGAGGCAGAATGCACAAGCCGGGGAT-AGACCCGGTCCCCCTCTACGTGCTGTCGATC
**
23748652 CTGCTGTCGCAACCCTCAGTCCAGTCTGAT
130 CTGCTGTCGCAACCCTC-GTCTGGTCTGAT
*
23748682 CTTAGACAGGGAATGAACTCTATAC
1 CTTAGACAGGGAATGAACTCCATAC
23748707 GCTTAGATTG
Statistics
Matches: 269, Mismatches: 67, Indels: 12
0.77 0.19 0.03
Matches are distributed among these distances:
158 147 0.55
159 121 0.45
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (158 bp):
CTTAGACAGGGAATGAACTCCATACACCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAGC
CGATCGGAGAGGCAGAATGCACAAGCCGGGGATAGACCCGGTCCCCCTCTACGTGCTGTCGATCC
TGCTGTCGCAACCCTCGTCTGGTCTGAT
Found at i:23749112 original size:26 final size:26
Alignment explanation
Indices: 23749049--23749126 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
23749039 CCGATTCGAT
*
23749049 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
23749075 C-TAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
23749100 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
23749126 C
1 C
23749127 CTCAGTCAAC
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
25 24 0.48
26 26 0.52
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:23749973 original size:26 final size:26
Alignment explanation
Indices: 23749944--23749994 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
23749934 CGATCTGATC
*
23749944 TTAGACTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
23749970 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
23749995 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:23751185 original size:26 final size:26
Alignment explanation
Indices: 23751156--23751206 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
23751146 GGTCTGATCA
*
23751156 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
23751182 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
23751207 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:23751654 original size:367 final size:354
Alignment explanation
Indices: 23750961--23751643 Score: 769
Period size: 367 Copynumber: 1.9 Consensus size: 354
23750951 TCGCGTGCTG
* ** * *
23750961 CCGGTCCCGCTCCCACAACCGTTGGTTTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCT
1 CCGGTCCCGCTCCCACAACCCTCAGTTTGACTAGGGCTTAAACATGGAATGAACTCCCTATGCCT
* * * * * *
23751026 AAGCCATCCCACGAAACAGGCGTGCGGGAGCTAAGACGGTCGGAGAGGCAGAATGCGCAAGTCGG
66 AAGCCAACCCACAAAACAAGCGTGCAGGAGCTAAGACGGTCGGAGAGGCAAAATGCGCAAGTCAG
* * * * * * * **
23751091 GGATTGGCCCGGTCCCCCTACGTGTTGTCGATCTTACTGCTGCAACCCTCGGTCTGGTCTGATCA
131 AGATCGGCCCGATCCCCCTACGTGTTGTCGATCCTACTGCCGCAACCCTCGGTCCGATCCAATCA
** * *
23751156 TAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC
196 TAGACTGGGAATGAACTCTGTATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * *
23751221 AAAACGAGCATGTAGGCACTCAACCGATCGGAGAGGCATAATGCACAAGCCGGGGATCAGCCCGA
261 AAAACGAGCATGGAGGCACTCAACCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGA
23751286 TCACCCTCTGCGTGCTGCCGATCCCGCTA
326 TCACCCTCTGCGTGCTGCCGATCCCGCTA
* * * **
23751315 CCGGTCCTGCTGCCACAACCCTCAGTTTGACTGGGGCTTAAACATGGAATGAACTCTGTATGCCT
1 CCGGTCCCGCTCCCACAACCCTCAGTTTGACTAGGGCTTAAACATGGAATGAACTCCCTATGCCT
* * *
23751380 AAGCCAACCCACAAAACAAGCGTGCAGGCGCTCAGCCGGTCGGAGAGGCAAAATGCGCAAGTCAG
66 AAGCCAACCCACAAAACAAGCGTGCAGGAGCTAAGACGGTCGGAGAGGCAAAATGCGCAAGTCAG
* * * *
23751445 AGATCGGCTCGATCCCCCCTGCATGCTGTTGATCTCGCTGCTGGTCCTACTGCCGTAGCCCTCGG
131 AGATCGGCCCGAT-CCCCCT--A--C-G-TG-T-T-G-T-C-GATCCTACTGCCGCAACCCTCGG
*
23751510 TCCGATCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAAGGAAT-AGACTCCGTATGC
183 TCCGATCCAATCATAGACTGGGAATGAACTCTGTATGCTTAGACAAGGAATGA-ACTCCGTATGC
** * * * * *
23751574 CTAAGCCAACCCATGAAACGAGCGTGCGA-GCACTCAGCC-AGCTGGAGAGGTAGAATGCGCAAG
247 CTAAGCCAACCCACAAAACGAGCATG-GAGGCACTCAACCGATC-GGAGAGGCAGAATGCACAAG
*
23751637 TCAGGGA
310 CCAGGGA
23751644 CTGGCCCGAT
Statistics
Matches: 265, Mismatches: 48, Indels: 19
0.80 0.14 0.06
Matches are distributed among these distances:
354 120 0.45
355 6 0.02
357 1 0.00
359 1 0.00
360 1 0.00
361 2 0.01
362 1 0.00
363 1 0.00
364 1 0.00
365 1 0.00
366 4 0.02
367 125 0.47
368 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (354 bp):
CCGGTCCCGCTCCCACAACCCTCAGTTTGACTAGGGCTTAAACATGGAATGAACTCCCTATGCCT
AAGCCAACCCACAAAACAAGCGTGCAGGAGCTAAGACGGTCGGAGAGGCAAAATGCGCAAGTCAG
AGATCGGCCCGATCCCCCTACGTGTTGTCGATCCTACTGCCGCAACCCTCGGTCCGATCCAATCA
TAGACTGGGAATGAACTCTGTATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCAC
AAAACGAGCATGGAGGCACTCAACCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGA
TCACCCTCTGCGTGCTGCCGATCCCGCTA
Found at i:23751892 original size:26 final size:26
Alignment explanation
Indices: 23751863--23751915 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23751853 CCGGTTTGAT
23751863 CTTAGAC-TGGGAATAAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
*
23751889 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
23751915 C
1 C
23751916 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:23752366 original size:26 final size:25
Alignment explanation
Indices: 23752337--23752415 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 25
23752327 CTAGTCCGAT
*
23752337 CTTAAACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGA-TGAACTCCGTATG
* *
23752363 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACT-GGGATGAACTCCGTATG
23752389 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACT-GGGATGAACTCCGTATG
23752415 C
1 C
23752416 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 43 0.93
27 3 0.07
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCGTATG
Found at i:23753111 original size:26 final size:26
Alignment explanation
Indices: 23753067--23753119 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
23753057 CTAATCCGAT
*
23753067 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATCAACTTC-GTATG
* *
23753093 CTTAGATTGGGGATCAACTTCGTATG
1 CTTAGACTGGGAATCAACTTCGTATG
23753119 C
1 C
23753120 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTTCGTATG
Found at i:23753483 original size:26 final size:26
Alignment explanation
Indices: 23753445--23753497 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23753435 CCGGTCCGAT
*
23753445 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
23753471 CTTAGAC-ATGGAATGGACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
23753497 C
1 C
23753498 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:23753770 original size:158 final size:158
Alignment explanation
Indices: 23753471--23753971 Score: 518
Period size: 158 Copynumber: 3.2 Consensus size: 158
23753461 ACTCTGTATG
* * * *
23753471 CTTAGAC-ATGGAATGGACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGTTCAG
1 CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGTTAAG
* *
23753535 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGTCC-AGTCCCCCCTATGTGCTGTCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGA-TCCCCCCTACGTGCTGTCGATC
** *
23753599 CTCCTGCTGCAACCCTTGGTCTGGTCTGAT
130 C-CCTGCCACAACCCTCGGTCTGGTCTGAT
* * * *
23753629 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGTCAA-CCATGAAACAAGCGTACGGGTGTTAAG
1 CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGTTAAG
** * * * *
23753692 CCTACCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTGTCGGTC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCCCC-CTACGTGCTGTCGATC
* **
23753757 CCGCTGCCACAACCCTCAGT-TCGGT-TGGGG
130 CC-CTGCCACAACCCTCGGTCT-GGTCT-GAT
* * * * *
23753787 CTTAGA-AATGGAATGAACTCCCTATGCCTAGGCCAACCCACGAAACGGGCGTGCGGGTGCTCAA
1 CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTG-TTAA
* ** * *
23753851 -CCGGTCGGAGAGGCAGAATGCGCAAGCCAAGGATTGGCCCGATCCCCCCTGCGTGCTATCGATC
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCCCCCTACGTGCTGTCGATC
* * * **
23753915 CTACTGCCACAACCCTCGGTCCGATCCAAT
130 C-CCTGCCACAACCCTCGGTCTGGTCTGAT
23753945 CTTAGA-T-TGGGAATGAACTCCGTATGC
1 CTTAGACTAT-GGAATGAACTCCGTATGC
23753972 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 52, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
157 66 0.24
158 150 0.54
159 59 0.21
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGTTAAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCCCCCTACGTGCTGTCGATCC
CCTGCCACAACCCTCGGTCTGGTCTGAT
Found at i:23753974 original size:26 final size:26
Alignment explanation
Indices: 23753945--23753995 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
23753935 CCGATCCAAT
*
23753945 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
23753971 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
23753996 TTCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23755378 original size:50 final size:51
Alignment explanation
Indices: 23755303--23755405 Score: 190
Period size: 50 Copynumber: 2.0 Consensus size: 51
23755293 CCATGGGCGA
23755303 CATGGGGGAAAAGCTTGAAAGGGTAGAGACTCACATTGCATCACTAG-CTC
1 CATGGGGGAAAAGCTTGAAAGGGTAGAGACTCACATTGCATCACTAGACTC
*
23755353 CATGGGGGAAAAGCTTGAAGGGGTAGAGACTCACATTGCATCACTAGACTC
1 CATGGGGGAAAAGCTTGAAAGGGTAGAGACTCACATTGCATCACTAGACTC
23755404 CA
1 CA
23755406 AAGTGAGCTA
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
50 46 0.90
51 5 0.10
ACGTcount: A:0.32, C:0.20, G:0.28, T:0.19
Consensus pattern (51 bp):
CATGGGGGAAAAGCTTGAAAGGGTAGAGACTCACATTGCATCACTAGACTC
Found at i:23760968 original size:159 final size:157
Alignment explanation
Indices: 23760613--23761020 Score: 410
Period size: 159 Copynumber: 2.6 Consensus size: 157
23760603 AACTCCGTAT
* * *
23760613 GCTTAGACATGGAATGTACTTCATATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTAC-GGCACTCAG
* * * * * * * *
23760678 CCAGTTGGAGAGGTAGAATGCACAAGCCGGGGATTGGCTCAGTCCCCCCTGCTTACTGTCGATCC
65 CCAGTCGAAGAGGCAGAATGCACAAGACGGGGATTGGCCCAGTCCCCCCTACGTACTGCCGATCC
* * *
23760743 TGCTGTCACAACCCTCAGTTCAGTCCGA
130 GGCTGCCACAACCCTCAGTCCAGTCCGA
* * * * * * *
23760771 TCTTAGACTTGGAATGAACTCCATATGCATAAGTCAACCTATGAAACGAGCGTGTAC-GCACTGA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGC--GTACGGCACTCA
* * *
23760835 GCCGGTCGAAGAGGCATAATGCGCAAGACGGGGATTGGCCCAGTCCCCCTCTACGTACTGCC-AG
64 GCCAGTCGAAGAGGCAGAATGCACAAGACGGGGATTGGCCCAGTCCCCC-CTACGTACTGCCGA-
* * * *
23760899 TCCGGCTGCCATAACCCTCGGTCCAG-CTGGG
127 TCCGGCTGCCACAACCCTCAGTCCAGTC-CGA
* * * *
23760930 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGCTGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAG-CGTAC-GGCACTCA
* *
23760994 GCCAGCCGAAGAGGCAGAATGCCCAAG
64 GCCAGTCGAAGAGGCAGAATGCACAAG
23761021 CTGAGGATCG
Statistics
Matches: 200, Mismatches: 42, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 92 0.46
159 101 0.50
160 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTACGGCACTCAGC
CAGTCGAAGAGGCAGAATGCACAAGACGGGGATTGGCCCAGTCCCCCCTACGTACTGCCGATCCG
GCTGCCACAACCCTCAGTCCAGTCCGA
Found at i:23761196 original size:13 final size:13
Alignment explanation
Indices: 23761178--23761205 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
23761168 CGGGTGCTCA
23761178 GCCGACCGGAGAG
1 GCCGACCGGAGAG
23761191 GCCGACCGGAGAG
1 GCCGACCGGAGAG
23761204 GC
1 GC
23761206 ATAATGCGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.32, G:0.46, T:0.00
Consensus pattern (13 bp):
GCCGACCGGAGAG
Found at i:23762564 original size:159 final size:158
Alignment explanation
Indices: 23762202--23762552 Score: 382
Period size: 158 Copynumber: 2.2 Consensus size: 158
23762192 CTTAGACATC
* * * *** * * *
23762202 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAATGTGCAGGTGCTCAACCGGTCGGAGA
1 GAATGAACTCCCTATGCCTAAGTCAACCAATGAAACGAGCATACGGGCGCTCAACCGGTCGGAGA
** * * * ** *
23762267 GGTAGAATGCGTAAGTCAGGGATCGGCCCGATCCCCCCTGCGTGCTATCAATCCTGCTGCTGCAT
66 GGTAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTACCAATCCCGCTGCCACAA
* *
23762332 CCCTCGGTCCGGTCTGATCTTAGACTGG
131 CCCTCGGTCCAGTCTGAGCTTAGACTGG
* * *
23762360 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAACCGGTCGGAGA
1 GAATGAACTCCCTATGCCTAAGTCAACCAATGAAACGAGCATACGGGCGCTCAACCGGTCGGAGA
* * * * *
23762425 GGTATAATGCACAAGCCGGGGATCGGCCTGATCCCCCTCTGCGTGCTGCCGATCCCGCTGCCACA
66 GGTAGAATGCACAAGCCAGGGATCGGCCCGATCCCCC-CTGCGTGCTACCAATCCCGCTGCCACA
*
23762490 ACCCTCGGTCCAG-CTAGGGCTTAGACAT-G
130 ACCCTCGGTCCAGTCT-GAGCTTAGAC-TGG
* **
23762519 GAATTAACTCCCTATGCCTAAGTTGACCAATGAA
1 GAATGAACTCCCTATGCCTAAGTCAACCAATGAA
23762553 TTGGGCATAC
Statistics
Matches: 163, Mismatches: 27, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
158 92 0.56
159 70 0.43
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GAATGAACTCCCTATGCCTAAGTCAACCAATGAAACGAGCATACGGGCGCTCAACCGGTCGGAGA
GGTAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTACCAATCCCGCTGCCACAA
CCCTCGGTCCAGTCTGAGCTTAGACTGG
Found at i:23763019 original size:26 final size:26
Alignment explanation
Indices: 23762981--23763033 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23762971 CCGATCCGAT
*
23762981 CTTAGACTGGGAAAGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
23763007 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAAAGAACTCCGTATG
23763033 C
1 C
23763034 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:23763159 original size:21 final size:21
Alignment explanation
Indices: 23763133--23763181 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
23763123 GTGCTACCGG
23763133 TCCCGCTACCACAACCCTCGA
1 TCCCGCTACCACAACCCTCGA
23763154 TCCCGCTACCACAACCCTCGA
1 TCCCGCTACCACAACCCTCGA
23763175 TCCCGCT
1 TCCCGCT
23763182 GGGGCTTAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.20, C:0.53, G:0.10, T:0.16
Consensus pattern (21 bp):
TCCCGCTACCACAACCCTCGA
Found at i:23764436 original size:26 final size:26
Alignment explanation
Indices: 23764400--23764452 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23764390 CTGGTCTGAT
23764400 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
23764426 CTTAGACATGGAATGAAGTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23764452 C
1 C
23764453 CTAAGCCTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23765587 original size:158 final size:157
Alignment explanation
Indices: 23765251--23765600 Score: 344
Period size: 158 Copynumber: 2.2 Consensus size: 157
23765241 CCTCCATCTG
* *
23765251 ATCCGATCTTAAATTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCATGCGGGC
1 ATCCGATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGGGC
* * * * * * * *
23765316 ACTGAGCCGACCGGAGAGGCATAATGCGCAAATCAGGGATGGTCCGATCCTCCTCTGCGTGCTGT
66 ACTCAGCAGACCGGACAGGCAAAATGCGCAAACCAGGGATGGCCCGATCCTCCCCTGCGTGCTAT
23765381 CGATCCCACTGCCACAACCCTCAGTCC
131 CGATCCCACTGCCACAACCCTCAGTCC
** * ** * * * * * *
23765408 GGCTAGGGCTTGGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGACACGGGCGTGCGG
1 ATC-CGATCTTAGA-TTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGG
* * * * * *
23765472 GCATTCAGCAGGCGGGACAGGCAAAATGCGCAAGCCGGGGATCGGCCCTATCC-CCCCTGCGTGC
64 GCACTCAGCAGACCGGACAGGCAAAATGCGCAAACCAGGGAT-GGCCCGATCCTCCCCTGCGTGC
*** * * *
23765536 TATCGATCTTGCTGCTACAACTCTCGGTCC
128 TATCGATCCCACTGCCACAACCCTCAGTCC
*
23765566 AATCCGATCTTAGATTGGGAATGAACTCCGTATGC
1 -ATCCGATCTTAGATTGGGAATGAACTCCATATGC
23765601 TTAGACATGG
Statistics
Matches: 147, Mismatches: 41, Indels: 9
0.75 0.21 0.05
Matches are distributed among these distances:
157 2 0.01
158 135 0.92
159 10 0.07
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
ATCCGATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGGGC
ACTCAGCAGACCGGACAGGCAAAATGCGCAAACCAGGGATGGCCCGATCCTCCCCTGCGTGCTAT
CGATCCCACTGCCACAACCCTCAGTCC
Found at i:23765709 original size:671 final size:674
Alignment explanation
Indices: 23764425--23765711 Score: 1603
Period size: 671 Copynumber: 1.9 Consensus size: 674
23764415 AACTCCGTAT
* * * * * *
23764425 GCTTAGACATGGAATGAAGTCCGTATGCCTAAGCCTACCCATGAAACGAACGTGCGGGCACTCAG
1 GCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACAGGCACTCAG
* * * * *
23764490 TCGATTGGAGAGGTATAATGCACAAGCCAGGGATCGACCTGGTCCCCCTAGCGTGCTGTCGATCC
66 TCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCCACCTGATCCCCCTAGCGTGCTGTCGATCC
** * * * **
23764555 TGTTGCCACAACCCTCGGTCCGGTTCGATCTTAGAGTACGAATGAACTCTGTATGCCTAAGTCAA
131 TGTTGCCACAACCCTCCATCCGATCCGATCTTAAAGTACGAATGAACTCCATATGCCTAAGTCAA
* * * * * *
23764620 CCCACTGAAACGAGCGTTCGGGCACTGAGCCAGTCGGAGAGGCATAATGTGCAAGCCGGGGATCG
196 CCCACTGAAACGAGCATGCGGGCACTGAGCCAGCCGGAGAGGCATAATGCGCAAACCAGGGATCG
* * * *
23764685 GCTCGATCCCCCTCTGTGTGCTACCAGTCCCGCTGCCACAACCCTAGATCTGACTGGGGCTTAGA
261 GCTCGATCCCCCTCTGCGTGCTACCAGTCCCACTGCCACAACCCTAGATCCGACTAGGGCTTAGA
* *
23764750 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACCGAAACGGGCGTGCGGACGCTCAGCCGACC
326 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACCGAAACGGGCGTGCGGACACTCAGCAGACC
* * * * * * * *
23764815 GGAGAGGCAGAGTGCGTAGGCTGAGGATCGGCTTAATCCCCCCTGCGTGCTGTCGATCCTGCTGT
391 GGACAGGCAAAATGCGCAAGCCGAGGATCGGCCTAATCCCCCCTGCGTGCTATCGATCCTGCTGT
* * *
23764880 CGCAACCCTCGGTCCGATCCGATCTTAAGCTGGGAATGAACTCCGTATGCTTAGACTAGGGATGA
456 CACAACCCTCGGTCCAATCCGATCTTAAGCTGGGAATGAACTCCGTATGCTTAGACTAGGAATGA
* * * ** *
23764945 ACTTCGTATCCCTAAGTCAACCCATGAAACGAGCGTGCAAGTGCTTAGCCCGCCGAAGAGGCATA
521 ACTCCGTATCCCTAAGCCAACCCATGAAACGAGAGTGCAAGCACTTAGCCCGCCGAAGAGGCAGA
* *
23765010 ATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTCTACGTGCTGTTGATCTTGCTGCCGATCTTGCT
586 ATGCACAAGCCGAGGACCAGCCCGGTCCCCCTCTACGTGCTGTTGATCTTGCTGCCGATCTTGCT
23765075 GCCACAACCCTCGGTCTGACTGGG
651 GCCACAACCCTCGGTCTGACTGGG
* *
23765099 GCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCCCTCAG
1 GCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACAGGCACTCAG
* * * * * * *
23765164 TCGGTCGGTGAGGCAGAATGCGCAAGTCGGGGA-CCAGCTCGATCCCCATTA-CGTGCTGTCGAT
66 TCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCCACCT-GATCCCC-CTAGCGTGCTGTCGAT
* * * **
23765227 CCTGTTGTCACAACCCTCCATCTGATCCGATCTTAAATTGGGAATGAACTCCATATGCCTAAGTC
129 CCTGTTGCCACAACCCTCCATCCGATCCGATCTTAAAGTACGAATGAACTCCATATGCCTAAGTC
*
23765292 AACCCA-TGAAACGAGCATGCGGGCACTGAGCC-GACCGGAGAGGCATAATGCGCAAATCAGGGA
194 AACCCACTGAAACGAGCATGCGGGCACTGAGCCAG-CCGGAGAGGCATAATGCGCAAACCAGGGA
* ** *
23765355 T-GG-TCCGATCCTCCTCTGCGTGCTGTC-GATCCCACTGCCACAACCCTCAG-TCCGGCTAGGG
258 TCGGCT-CGATCCCCCTCTGCGTGCTACCAG-TCCCACTGCCACAACCCT-AGATCCGACTAGGG
* * * * *
23765416 CTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-TGACACGGGCGTGCGGGCATTCAG
320 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACCGAAACGGGCGTGCGGACACTCAG
* * *
23765480 CAGGCGGGACAGGCAAAATGCGCAAGCCGGGGATCGGCCCT-ATCCCCCCTGCGTGCTATCGATC
385 CAGACCGGACAGGCAAAATGCGCAAGCCGAGGATCGG-CCTAATCCCCCCTGCGTGCTATCGATC
* * *
23765544 TTGCTG-CTACAACTCTCGGTCCAATCCGATCTT-AGATTGGGAATGAACTCCGTATGCTTAGAC
449 CTGCTGTC-ACAACCCTCGGTCCAATCCGATCTTAAG-CTGGGAATGAACTCCGTATGCTTAGAC
* * * *
23765607 -ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGAGCACTTAGCCGGTCG
512 TA-GGAATGAACTCCGTATCCCTAAGCCAACCCATGAAACGAGAGTGCAAGCACTTAGCCCGCCG
* * *
23765671 GAGAGGCAGAATGCACAAGTCGGGGACC-GACCCGGTCCCCC
576 AAGAGGCAGAATGCACAAGCCGAGGACCAG-CCCGGTCCCCC
23765712 CTTGCGTGCT
Statistics
Matches: 516, Mismatches: 86, Indels: 25
0.82 0.14 0.04
Matches are distributed among these distances:
670 5 0.01
671 208 0.40
672 87 0.17
673 55 0.11
674 159 0.31
675 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (674 bp):
GCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACAGGCACTCAG
TCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCCACCTGATCCCCCTAGCGTGCTGTCGATCC
TGTTGCCACAACCCTCCATCCGATCCGATCTTAAAGTACGAATGAACTCCATATGCCTAAGTCAA
CCCACTGAAACGAGCATGCGGGCACTGAGCCAGCCGGAGAGGCATAATGCGCAAACCAGGGATCG
GCTCGATCCCCCTCTGCGTGCTACCAGTCCCACTGCCACAACCCTAGATCCGACTAGGGCTTAGA
CATGGAATGAACTCCCTATGCCTAAGCCAACCCACCGAAACGGGCGTGCGGACACTCAGCAGACC
GGACAGGCAAAATGCGCAAGCCGAGGATCGGCCTAATCCCCCCTGCGTGCTATCGATCCTGCTGT
CACAACCCTCGGTCCAATCCGATCTTAAGCTGGGAATGAACTCCGTATGCTTAGACTAGGAATGA
ACTCCGTATCCCTAAGCCAACCCATGAAACGAGAGTGCAAGCACTTAGCCCGCCGAAGAGGCAGA
ATGCACAAGCCGAGGACCAGCCCGGTCCCCCTCTACGTGCTGTTGATCTTGCTGCCGATCTTGCT
GCCACAACCCTCGGTCTGACTGGG
Found at i:23765895 original size:159 final size:157
Alignment explanation
Indices: 23765600--23766364 Score: 636
Period size: 159 Copynumber: 4.8 Consensus size: 157
23765590 ACTCCGTATG
* * *
23765600 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-AGTGCGAGCACTTAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCA-TTCGGGCACTGAG
* * * * * * * *
23765664 CCGGTCGGAGAGGCAGAATGCACAAGTCGGGGACCGACCCGGTCCCCCCTTGCGTGCTATCGATC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGATCCAGTCCCCCC-TGCGTGCTGTCGAAC
* * *
23765729 CTGCTGCCACAACCCTCAATCCAGTCCAAT
129 CTACTGCCACAACCCTCGATCC-GTCCGAT
* * *
23765759 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAGCCCATAAAACGAGCATTCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATTCGGGCACTGAG
* * * * **
23765823 CCGACCGGAGAGGCATAATGCGCAAGCTGGGGATCGATCCAGTCCCCCTCTGCTTGCTGTCGGTC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGATCCAGTCCCCC-CTGCGTGCTGTCGAAC
* ** ** **
23765888 GC-ACTGCCACAACCCTCGCTTTGGTTGGGG
129 -CTACTGCCACAACCCTCG-ATCCGTCCGAT
* * * *
23765918 CTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCATGAAACG-GACGTGT-GGGCACTCA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CAT-TCGGGCACTGA
* ** * * * *
23765981 GCTGGTGGGAGAGGCAGAATACGCAAGCCGGGGATCG-GCCCGATCCCCCCTGCGTGCT-ACTGA
64 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGATCCAG-TCCCCCCTGCGTGCTGTC-GA
* * *
23766044 ACCTTCTGCCACAACCCTCGGTCCGATCTGAT
127 ACCTACTGCCACAACCCTCGATCCG-TCCGAT
* * **
23766076 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGTGTTCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATTCGGGCACTGAG
* * * * * *
23766140 CTGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCTCGA-TCCCCCTTTGCGTGCTGTCGGA
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GATCCAGTCCCCC-CTGCGTGCTGTCGAA
* * * * **
23766204 CCCACTGCCACAACCCTCGATCTGGCTGGGG
128 CCTACTGCCACAACCCTCGATCCGTC-CGAT
* * * * *
23766235 CTTAGACATGGAATGAATTCCCTATGCCTAAGCCAACCCACGAAAC-AG-GTGTGCGGGCACTCA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCAT-T-CGGGCACTGA
* * * * * *
23766298 GCTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTCC-GATCCTCCCTACGTGCTGTCAAA
64 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGATCCAG-TCCCCCCTGCGTGCTGTCGAA
23766362 CCT
128 CCT
23766365 TCTACCGAAC
Statistics
Matches: 485, Mismatches: 96, Indels: 51
0.77 0.15 0.08
Matches are distributed among these distances:
157 8 0.02
158 141 0.29
159 327 0.67
160 9 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATTCGGGCACTGAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGATCCAGTCCCCCCTGCGTGCTGTCGAACCT
ACTGCCACAACCCTCGATCCGTCCGAT
Found at i:23766039 original size:502 final size:500
Alignment explanation
Indices: 23765099--23766102 Score: 1349
Period size: 502 Copynumber: 2.0 Consensus size: 500
23765089 TCTGACTGGG
* *
23765099 GCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCCCTCAG
1 GCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTACAGGCACTCAG
* * * * *
23765164 TCGGTCGGTGAGGCAGAATGCGCAAGTCGGGGACCAGCTCGATCCCCATTACGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCACAAGTCGGGGACCAGCCCGATCCCCATTACGTGCTATCGATCC
* * * * * * *
23765229 TGTTGTCACAACCCTCCATCTGATCCGATCTTAAATTGGGAATGAACTCCATATGCCTAAGTCAA
131 TGCTGCCACAACCCTCAATCAGATCCAATCTTAAACTGGGAATGAACTCCATATGCCTAAGCCAA
* *
23765294 CCCATGAAACGAGCATGCGGGCACTGAGCCGACCGGAGAGGCATAATGCGCAAATCAGGGATGGT
196 CCCATAAAACGAGCATGCGGGCACTGAGCCGACCGGAGAGGCATAATGCGCAAATCAGGGATGAT
* *
23765359 CCGATCCTCCTCTGCGTGCTGTCGATCCCACTGCCACAACCCTCAGTCCGGCTAGGGCTTGGACA
261 CCGATCCCCCTCTGCGTGCTGTCGATCCCACTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACA
* * * *
23765424 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGACACGGGCGTGCGGGCATTCAGCAGGCGGGA
326 TGGAATGAACTCCCTATGCCCAAGCCAACCCATGAAACGGACGTGCGGGCACTCAGCAGGCGGGA
* * * *
23765489 CAGGCAAAATGCGCAAGCCGGGGATCGGCCCTATCCCCCCTGCGTGCTA-TCG-ATCTTGCTGCT
391 CAGGCAAAATACGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTACT-GAACCTT-CTGCC
* *
23765552 ACAACTCTCGGTCCAATCCGATCTTAGATTGGGAATGAACTCCGTAT
454 ACAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
23765599 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGC-GAGCACTTA
1 GCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTACAG-GCACTCA
* * *
23765663 GCCGGTCGGAGAGGCAGAATGCACAAGTCGGGGACC-GACCCGGTCCCCCCTTGCGTGCTATCGA
65 GCCGGTCGGAGAGGCAGAATGCACAAGTCGGGGACCAG-CCCGAT-CCCCATTACGTGCTATCGA
* **
23765727 TCCTGCTGCCACAACCCTCAATCCAG-TCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAG
128 TCCTGCTGCCACAACCCTCAAT-CAGATCCAATCTTAAACTGGGAATGAACTCCATATGCCTAAG
* * * *
23765791 CCAGCCCATAAAACGAGCATTCGGGCACTGAGCCGACCGGAGAGGCATAATGCGC-AAGCTGGGG
192 CCAACCCATAAAACGAGCATGCGGGCACTGAGCCGACCGGAGAGGCATAATGCGCAAATC-AGGG
* * * ** * *
23765855 ATCGATCC-AGTCCCCCTCTGCTTGCTGTCGGTCGCACTGCCACAACCCTC-GCTTTGGTTGGGG
256 AT-GATCCGA-TCCCCCTCTGCGTGCTGTCGATCCCACTGCCACAACCCTCAG-TCCGGCTAGGG
*
23765918 CTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCATGAAACGGACGTGTGGGCACTCAGC
318 CTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCATGAAACGGACGTGCGGGCACTCAGC
* * * *
23765983 TGGTGGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTACTGAACCT
383 AGGCGGGACAGGCAAAATACGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTACTGAACCT
* * *
23766048 TCTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTAT
448 TCTGCCACAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTAT
23766101 GC
1 GC
23766103 CTAAGTCAAC
Statistics
Matches: 437, Mismatches: 57, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
499 2 0.00
500 96 0.22
501 126 0.29
502 208 0.48
503 5 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (500 bp):
GCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTACAGGCACTCAG
CCGGTCGGAGAGGCAGAATGCACAAGTCGGGGACCAGCCCGATCCCCATTACGTGCTATCGATCC
TGCTGCCACAACCCTCAATCAGATCCAATCTTAAACTGGGAATGAACTCCATATGCCTAAGCCAA
CCCATAAAACGAGCATGCGGGCACTGAGCCGACCGGAGAGGCATAATGCGCAAATCAGGGATGAT
CCGATCCCCCTCTGCGTGCTGTCGATCCCACTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACA
TGGAATGAACTCCCTATGCCCAAGCCAACCCATGAAACGGACGTGCGGGCACTCAGCAGGCGGGA
CAGGCAAAATACGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTACTGAACCTTCTGCCAC
AACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:23766133 original size:317 final size:316
Alignment explanation
Indices: 23765599--23766364 Score: 1036
Period size: 317 Copynumber: 2.4 Consensus size: 316
23765589 AACTCCGTAT
* * *
23765599 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGAGCACTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GAGTGCGGGCACTCAG
* * * * * * *
23765664 CCGGTCGGAGAGGCAGAATGCACAAGTCGGGGACCGACCCGGTCCCCCCTTGCGTGCTATCGATC
65 CTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCC-TGCGTGCTATCGAAC
23765729 CTGCTGCCACAACCCTCAATCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
129 CTGCTGCCACAACCCTCAATCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
* *
23765794 GCCCATAAAACGAGCATTCGGGCACTGAGCCGACCGGAGAGGCATAATGCGCAAGCTGGGGATC-
194 ACCCATAAAACGAGCATTCGGGCACTGAGCCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCA
* * * * * *
23765858 GATCCAGTCCCCCTCTGCTTGCTGTCGGTCGCACTGCCACAACCCTCGCTTTGGTTGGG
259 GATCCA-TCCCCCTCTGCGTGCTGTCGGACCCACTGCCACAACCCTCGATCTGGCTGGG
* *
23765917 GCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCATGAAACGGACGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGA-GTGCGGGCACTCAG
* *
23765982 CTGGTGGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTA-CTGAAC
65 CTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATC-GAAC
* ** ** *
23766046 CTTCTGCCACAACCCTCGGTCC-GATCTGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGT
129 CTGCTGCCACAACCCTCAATCCAG-TCCAATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGC
* ** * *
23766109 CAACCCATGAAACGAGTGTTCGGGCACTGAGCTGGCCGGAGAGGCATAATGCGCAAGCCGGGGAT
192 CAACCCATAAAACGAGCATTCGGGCACTGAGCCGACCGGAGAGGCATAATGCGCAAGCCGGGGAT
* * *
23766174 CAGCTCGATCCCCCTTTGCGTGCTGTCGGACCCACTGCCACAACCCTCGATCTGGCTGGG
257 CAGATCCATCCCCCTCTGCGTGCTGTCGGACCCACTGCCACAACCCTCGATCTGGCTGGG
* * *
23766234 GCTTAGACATGGAATGAATTCCCTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-GGAGTGCGGGCACTCAG
* * * * *
23766299 CTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTCCGATCCTCCCTACGTGCTGTCAAACC
65 CTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGAACC
23766364 T
130 T
23766365 TCTACCGAAC
Statistics
Matches: 393, Mismatches: 48, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
316 3 0.01
317 285 0.73
318 105 0.27
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGAGTGCGGGCACTCAGC
TGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGAACCT
GCTGCCACAACCCTCAATCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
CCATAAAACGAGCATTCGGGCACTGAGCCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCAGA
TCCATCCCCCTCTGCGTGCTGTCGGACCCACTGCCACAACCCTCGATCTGGCTGGG
Found at i:23767136 original size:26 final size:26
Alignment explanation
Indices: 23767107--23767159 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23767097 CCGGTCTGAT
*
23767107 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTACGTATG
**
23767133 CTTAGACTGGGGATGAACTACGTATG
1 CTTAGACTGGCAATGAACTACGTATG
23767159 C
1 C
23767160 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTACGTATG
Found at i:23767471 original size:695 final size:692
Alignment explanation
Indices: 23766055--23768216 Score: 2224
Period size: 695 Copynumber: 3.1 Consensus size: 692
23766045 CCTTCTGCCA
* * * *
23766055 CAACCCTCGGTCCGA-TCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGA
1 CAACCCTCAGTCC-ACTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * ** * * * *
23766119 AACGAGTGTTCGGGCACTGAGCTGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCTCGATC
65 AACGAGAGTGCGGGCGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGACGAGGATCAGCCCGAT-
* * * *
23766184 CCCCTT-TGCGTGCTGTCGGA-CCCACTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGA
129 CCCCTTCTACGTGCT-ACCGATCCCACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGA
* * * * *
23766247 ATGAATTCCCTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGGCA-CTCAGCTGGTCGGAGAG
193 ATGAACTCCCTAAGCCTAAGCCAACCCACGAAACGGGCGTGCGGG-AGCTCAGCCGGTCGGAGAG
* * * * * *
23766311 GCAGAATGCGCAAGCCGGGGATCGGTCCGATCCTCCCTACGTGCTGTCAAACCTTCTACCGAACC
257 GTAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGC--T---A---TC-A-C-ATCC
* * * * * * *
23766376 TTCTGCCGTAACCCTCGGTTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCTTATGCTTAA
311 TACTG-CGCAA-CC-C---TCAATCCGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCTTAG
* ** * * *
23766441 ACTAGGGATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCA-AC
369 ACTGGGGATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-ACAGGC
* * * * * * * * * *
23766505 CGAAGAGGCCCGCTTGAGAGGCATAATGCGCAAGTCGAGGATCAGCCCGGTCCGCCTCTACGTGC
433 CG--GAGGACCGATCGAAAGGCATAATGCACAAGCCG-GGATTAGCACGGTCCCCCTCTGCGTGC
* * * * * * *
23766570 TGTCGATCCAGTTGCC-AGTCCTGCTGCCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAAT
495 TGTCGATCCCGCTACCGA-TCTTGCTACGACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAAT
** * * **
23766634 GAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGAGCGCTCAGTCGGCCGGAGAGGTA
559 GAACTCCGTATGCCTAAGAAAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGTA
* ** * * ** ** *
23766699 GAATGCGTAAGCTAGGGACCGGCCCGGTCCCCCCTACGTGCTGTCGATTGTGCTGCTGGTCCTGC
624 GAATGCGCAAGCCGGGGATCGACCCGGT-CCCCCTGTGTGCTGTCGATCCTACTGCTGGTCCTGC
*
23766764 TACTG
688 TACCG
* * * *
23766769 CAACCCTCGGTCTGA-TCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
1 CAACCCTCAGTC-CACTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
*
23766833 AATGAGAGTGCGGGCGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGACGAGGATC-GACCCGAT
65 AACGAGAGTGCGGGCGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGACGAGGATCAG-CCCGAT
** *
23766897 CCCCTTCTACGTGCTACCGATCCCTTTGCCACAACCCCTCGGTCTGGCTAGGGCTTAGACATGGA
129 CCCCTTCTACGTGCTACCGATCCCACTGCCACAA-CCCTCGGTCTGGCTGGGGCTTAGACATGGA
* *
23766962 ATGAACTCCCTAAGCCTAAGCCAACCCACGAAACGGGCGTACGGGTGCTCAGCCGGTCGGAGAGG
193 ATGAACTCCCTAAGCCTAAGCCAACCCACGAAACGGGCGTGCGGGAGCTCAGCCGGTCGGAGAGG
* *
23767027 TAGAATGCGCAAGCCAGGGACCGGCCCGATCCCCCCTGCGTGCTATCA-ATCCTGCTGCGCAACC
258 TAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTATCACATCCTACTGCGCAACC
23767091 CTCAATCCGGTCTGATCTTAGACTGGCAATGAACTCCGTATGCTTAGACTGGGGATGAACTACGT
323 CTCAATCCGGTCTGATCTTAGACTGG-AATGAACTCCGTATGCTTAGACTGGGGATGAACTACGT
* * *
23767156 ATGCCTAAGTCAACCCATGAAACGATCGTGCGGGCGCTCAACAGGCCGGAGGGCCGATCGGAAAG
387 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACAGGCCGGAGGACCGATC-GAAAG
*
23767221 GCATAATGCACAAGCCAGGGATTAGCACGGTCCCCCTCTGCATGCTGTCGATCCCGCTACCGATC
451 GCATAATGCACAAGCC-GGGATTAGCACGGTCCCCCTCTGCGTGCTGTCGATCCCGCTACCGATC
* *
23767286 TTGCTACGACAACCCTTGGTCCGGCTGGGG-TTACAAATGGAATGAACTCCGTATGCCTAAGAAA
515 TTGCTACGACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGAAA
* * *
23767350 ACCCACGAAATGAGCGTGCGGGTGCTCAGTCGATCGGAGAGGCAGAATGCGCAACCCGGGGATCG
580 ACCCACGAAATGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCG
* * *
23767415 ATCCGGTGCCCCCTGTGTGCTGCCGATCCTTCTGCTGGTCCTGCTACCG
645 ACCCGGT-CCCCCTGTGTGCTGTCGATCCTACTGCTGGTCCTGCTACCG
* *
23767464 TAACCCTCAGTCCACTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAA
1 CAACCCTCAGTCCACTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * *
23767529 ACGAGCGTGTGGGCGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGTC-AGGGATCAGCCCGAT-
66 ACGAGAGTGCGGGCGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGACGA-GGATCAGCCCGATC
** * **
23767592 CCCTCTCTACGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAA
130 CCCT-TCTACGTGCTACCGATCCCACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAA
* * *
23767657 TGAAACTCGCCCAAAG-CTAAGGCCAAACCCACGAAATGGGGCGTGCGGGCAGCTTAG-CGGTCG
194 TG-AACT--CCCTAAGCCTAA-GCC-AACCCACGAAA-CGGGCGTGCGGG-AGCTCAGCCGGTCG
* * * *
23767720 GAGAGGCTGGGAATGCGCCAAAGCCAGGGATCGACCC-AGTCCACTGTCCTGCGTGCTA-CAGAT
252 GAGAGG-T-AGAATGCG-C-AAGCCAGGGATCGGCCCGA-TCC-C--CCCTGCGTGCTATCACAT
* * *
23767783 -CTACTTGCGCAA-CCTCAAGTATCGGTCTGATCTTAGAGTGGAATGAACCTTCGTATGC-TAGA
309 CCTAC-TGCGCAACCCTCAA-T-CCGGTCTGATCTTAGACTGGAATGAA-CTCCGTATGCTTAGA
* * *
23767845 CTGGGGATGAACTACGTATG-CTAACTCAA-CCACGAAACGAGCGTTGCGGGATGCTCAACCGGC
370 CTGGGGATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCG-TGCGGG-CGCTCAACAGGC
* *
23767908 CGGAGGAACCGATCG-AAGAGCATAATGCACAA-CCGGGATTA-CACGGTTCCCCTATTGCGTGC
433 CGGAGG-ACCGATCGAAAG-GCATAATGCACAAGCCGGGATTAGCACGGTCCCCCT-CTGCGTGC
* * ** * * * * * *
23767970 T-ACAATCCCGCTGTTCGGTCTTGGTGCCG-CAA-CCTTCAGTTCAG-TGAGGGCTTAGACATGG
495 TGTCGATCCCGCT-ACCGATCTTGCT-ACGACAACCCTT-GGTCCGGCTG-GGGCTTAGACATGG
* * *
23768031 AATGAACTCCGTACGCCTAAGAAAACCCATGAAATGAGCGTGCAGGCGCTCAGTCGATCGGAGAG
556 AATGAACTCCGTATGCCTAAGAAAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGATCGGAGAG
* *
23768096 GTAGAATGCACAAGCCGGGGATC-AGCCCGGTCCCCTCTGTGTGTTGTC-ATTCCTACTGCTGGT
621 GTAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCC-CTGTGTGCTGTCGA-TCCTACTGCTGGT
*
23768159 CCTGCTGCCG
683 CCTGCTACCG
* *
23768169 CAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 CAACCCTCAGTCCACTCCGATCTTAGACTGGGAATGAACTCCGTATGC
23768217 TTAGACATGG
Statistics
Matches: 1239, Mismatches: 161, Indels: 105
0.82 0.11 0.07
Matches are distributed among these distances:
694 36 0.03
695 272 0.22
696 90 0.07
697 104 0.08
698 11 0.01
699 22 0.02
700 7 0.01
701 9 0.01
702 6 0.00
703 51 0.04
704 51 0.04
705 202 0.16
706 82 0.07
707 35 0.03
710 1 0.00
713 11 0.01
714 127 0.10
715 122 0.10
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (692 bp):
CAACCCTCAGTCCACTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGAGTGCGGGCGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGACGAGGATCAGCCCGATCC
CCTTCTACGTGCTACCGATCCCACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATG
AACTCCCTAAGCCTAAGCCAACCCACGAAACGGGCGTGCGGGAGCTCAGCCGGTCGGAGAGGTAG
AATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTATCACATCCTACTGCGCAACCCTC
AATCCGGTCTGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTACGTATGC
CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACAGGCCGGAGGACCGATCGAAAGGCATA
ATGCACAAGCCGGGATTAGCACGGTCCCCCTCTGCGTGCTGTCGATCCCGCTACCGATCTTGCTA
CGACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGAAAACCCAC
GAAATGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGG
TCCCCCTGTGTGCTGTCGATCCTACTGCTGGTCCTGCTACCG
Found at i:23768228 original size:26 final size:26
Alignment explanation
Indices: 23768190--23768242 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23768180 CCAGTCTGAT
23768190 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23768216 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23768242 C
1 C
23768243 CTAAGCAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23768514 original size:21 final size:21
Alignment explanation
Indices: 23768488--23768532 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
23768478 CAATCCCCCT
23768488 CTGCCACAACCCTCGGTCCGG
1 CTGCCACAACCCTCGGTCCGG
23768509 CTGCCACAACCCTCGGTCCGG
1 CTGCCACAACCCTCGGTCCGG
23768530 CTG
1 CTG
23768533 GGGCTTAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.13, C:0.47, G:0.24, T:0.16
Consensus pattern (21 bp):
CTGCCACAACCCTCGGTCCGG
Done.