Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 237 of 402
Found at i:23768842 original size:18 final size:18
Alignment explanation
Indices: 23768819--23768854 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
23768809 GCATGCTACT
23768819 GGTCCTACTGCCACAACC
1 GGTCCTACTGCCACAACC
*
23768837 GGTCCTATTGCCACAACC
1 GGTCCTACTGCCACAACC
23768855 CTCGGTTCGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.42, G:0.17, T:0.19
Consensus pattern (18 bp):
GGTCCTACTGCCACAACC
Found at i:23769091 original size:26 final size:26
Alignment explanation
Indices: 23769043--23769092 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
23769033 ATCCGATCTG
*
23769043 AGACAGGGAATGAACTCCGTATGCTT
1 AGACAGGGAATGAACTCCATATGCTT
* * *
23769069 AGACATGGAATGAATTTCATATGC
1 AGACAGGGAATGAACTCCATATGC
23769093 CTAAGTCAAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (26 bp):
AGACAGGGAATGAACTCCATATGCTT
Found at i:23769419 original size:26 final size:26
Alignment explanation
Indices: 23769383--23769435 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23769373 CCGGTCCAAT
*
23769383 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
23769409 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23769435 C
1 C
23769436 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23770133 original size:26 final size:27
Alignment explanation
Indices: 23770094--23770147 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
23770084 GACTCAAACT
*
23770094 CTTAGACTTGGGAATGAACTCCGTATG
1 CTTAGACATGGGAATGAACTCCGTATG
23770121 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGACATGGGAATGAACTCCGTATG
23770147 C
1 C
23770148 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 18 0.69
27 8 0.31
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (27 bp):
CTTAGACATGGGAATGAACTCCGTATG
Found at i:23770595 original size:26 final size:26
Alignment explanation
Indices: 23770557--23770609 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23770547 GGCTCAAAAT
23770557 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23770583 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23770609 C
1 C
23770610 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23770946 original size:159 final size:157
Alignment explanation
Indices: 23770582--23771204 Score: 590
Period size: 159 Copynumber: 3.9 Consensus size: 157
23770572 AACTCCGTAT
* * *
23770582 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * ** * * * *
23770647 CCGGCCGGAGAGGTAGAATGCGTAAGCGGGGGATCGACCCGGTCCGCCCCTACGTGCTATCGA-C
66 CCGACCGAAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGATCC-CCCCTACGTGCCACCGATC
* * * *
23770711 CTGCTGCCGCAACCCTCGGTCCGATCCGA
130 CTGCTGCCACAACCCTCGGTCGGCT-GGA
* * * * * *
23770740 TCTTAGAC-TGGGAATGAACGT-CGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAAC-TCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTC
* * * *
23770803 AGCCGACTGAAGAGGTATAATGCGCAAGCCAGTGATCGGCTCGATCCCCCTCTACGTGCCACCGA
64 AGCCGACCGAAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCC-CTACGTGCCACCGA
*
23770868 TCTTGCTGCCACAACCCTCGGTCTGGCTGGA
128 TCCTGCTGCCACAACCCTCGGTC-GGCTGGA
* * * * * * * *
23770899 GCTTAGACATGGAGTGAACTCCCTATGCCTAAGCCTACCCACGAAACGGGTGTGCTGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * * * * * *
23770964 --GAAGCCGAAGAGGCATAATACACAAGTCGGGGATCGGCCCGATCCCCCTCTGCGTGCCGCTGG
66 CCG-A-CCGAAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCC-CTACGTGCCACCGA
* * *
23771027 TCCAGCTACCACAACCCTCGGTCAGGCTGGG
128 TCCTGCTGCCACAACCCTCGGTC-GGCTGGA
* *
23771058 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCCGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * **
23771123 CCGACCGGAGAGGTAGAATGCGTAAACCAAGGATCGGCCCAATCCCCCCTACGTGCTGCCGATCC
66 CCGACCGAAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCCACCGATCC
* *
23771188 TGCTGTCACAACACTCG
131 TGCTGCCACAACCCTCG
23771205 ATCCGGCCCG
Statistics
Matches: 376, Mismatches: 78, Indels: 22
0.79 0.16 0.05
Matches are distributed among these distances:
157 5 0.01
158 128 0.34
159 238 0.63
160 4 0.01
161 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCGACCGAAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCCACCGATCC
TGCTGCCACAACCCTCGGTCGGCTGGA
Found at i:23772141 original size:26 final size:26
Alignment explanation
Indices: 23772100--23772152 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23772090 CCGGTCCGAT
23772100 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
23772126 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
23772152 C
1 C
23772153 CTAGTTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23772729 original size:26 final size:26
Alignment explanation
Indices: 23772700--23772752 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23772690 CCGGTCTGAT
23772700 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23772726 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23772752 C
1 C
23772753 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23773173 original size:184 final size:184
Alignment explanation
Indices: 23772882--23773276 Score: 470
Period size: 184 Copynumber: 2.1 Consensus size: 184
23772872 GGCTCTGTCT
* * * *
23772882 GATCTTAGACTGGGGATGAGCTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCAC
1 GATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGAGCGCAC
* * *
23772947 AGCAGGCCGGAGAGGCCGATCGAAGAGGTAGAATGTGAAAGCC-GAGGATCGGCTCAATCCACCC
66 AGCAGGCCGGAGAGGCAGATCGAAGAGGCAGAATGCGAAAGCCTG-GGATCGGCTCAATCCACCC
* ** * *
23773011 CTACATGCTGTCGACCCTGTTGCTAGTCCTGCTACTACAACCCTCAGTCCGGTCC
130 CTACATGCTGCCGACCCTACTGCTAGTCCTGCTACCACAACCCTCAGTCCGATCC
* ** * *
23773066 GATCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAATTAGCGTACGAGTGCTC
1 GATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGAGCGCAC
* * * * **
23773131 AGTAGGCTGGAGAGGCTAGCT-GGAGAGGCAGAATGCGAAAGCCTGGGATCGGCTCGGTCCACCC
66 AGCAGGCCGGAGAGGC-AGATCGAAGAGGCAGAATGCGAAAGCCTGGGATCGGCTCAATCCACCC
* * * * * *
23773195 CTGCATGCTGCCGATCCTACTGCTAGTCTTGCTACCACAACCCTCGGTCTGATCT
130 CTACATGCTGCCGACCCTACTGCTAGTCCTGCTACCACAACCCTCAGTCCGATCC
* * *
23773250 AATCTTAGACTAGGAATGAACTCCGTA
1 GATCTTAGACTGGGGATGAACTCCGTA
23773277 CGCTTAGACA
Statistics
Matches: 176, Mismatches: 33, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
184 173 0.98
185 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.21
Consensus pattern (184 bp):
GATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGAGCGCAC
AGCAGGCCGGAGAGGCAGATCGAAGAGGCAGAATGCGAAAGCCTGGGATCGGCTCAATCCACCCC
TACATGCTGCCGACCCTACTGCTAGTCCTGCTACCACAACCCTCAGTCCGATCC
Found at i:23773291 original size:26 final size:26
Alignment explanation
Indices: 23773253--23773302 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
23773243 CTGATCTAAT
23773253 CTTAGACTAGGAATGAACTCCGTACG
1 CTTAGACTAGGAATGAACTCCGTACG
*
23773279 CTTAGAC-ATGGAATGAATTCCGTA
1 CTTAGACTA-GGAATGAACTCCGTA
23773303 TGCCTAAGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTACG
Found at i:23773646 original size:25 final size:26
Alignment explanation
Indices: 23773596--23773647 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
23773586 TCGATCAGAT
23773596 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
23773622 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
23773647 C
1 C
23773648 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23774353 original size:26 final size:26
Alignment explanation
Indices: 23774315--23774370 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
23774305 GGCTCAAACT
*
23774315 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
23774341 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
23774367 CTTA
1 CTTA
23774371 AGCTAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23775577 original size:26 final size:26
Alignment explanation
Indices: 23775537--23775586 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
23775527 CGGTCCGATG
*
23775537 TTAGACTGGGAATGAACTCTGTATAC
1 TTAGACTGGGAATGAACTCCGTATAC
23775563 TTAGACTAGGG-ATGAACTCCGTAT
1 TTAGACT-GGGAATGAACTCCGTAT
23775587 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATAC
Found at i:23776296 original size:26 final size:26
Alignment explanation
Indices: 23776258--23776309 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23776248 GGCTCAAACT
** *
23776258 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
23776284 CTTAGACAAGGAATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
23776310 ACTAAGCCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:23777094 original size:159 final size:157
Alignment explanation
Indices: 23776727--23777259 Score: 423
Period size: 159 Copynumber: 3.4 Consensus size: 157
23776717 CTGCTGCTGG
* **
23776727 TCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGC
1 TCCTGCTACCACAACCCTC-GTCCGGTTAGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGC
* * * * *
23776792 CAACCCACGAAACGAGCATCCAGGAGCTCAGCCGGCCGGAGAGGCAGAATGCGTAAGCCGACCAC
65 CAACCCACGAAATGAGCGTCCGGGAGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGACCAC
*
23776857 CGGCCCGGTACCCCCTGCGTGCTGTCGA
130 CAGCCCGGTACCCCCTGCGTGCTGTCGA
** * * * ** *
23776885 TCCTGCTGTCGCAACCCTCGATCCAGTTCGATCTTAGA-TTGGGAATGAACTTCGTATGCCTAAG
1 TCCTGCTACCACAACCCTCG-TCCGGTTAGGGCTTAGACAT-GGAATGAACTTCGTATGCCTAAG
* * * * * * * * * * ***
23776949 TCAACCCATGAAATGAGCGTTCGGGTGTTGAGCCAGTCGGAGAGGCATAATGTGCAAGTCGGGGA
64 CCAACCCACGAAATGAGCGTCCGGGAGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGACCA
* *
23777014 TCAGCTCGGT-CCCTCTCTGCGTGCTGTCGA
129 CCAGCCCGGTACCC-C-CTGCGTGCTGTCGA
* * *
23777044 T-CTCGCTACCACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 TCCT-GCTACCACAACCCTC-GTCCGGTTAGGGCTTAGACATGGAATGAACTTCGTATGCCTAAG
* * * * * * ***
23777108 CCAACCCACGAAATGGGCGTGCGGGCA-CTCAGTCGGCCAGAGAGGTAGAATGCGCAAGCCGGGG
64 CCAACCCACGAAATGAGCGTCCGGG-AGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGACC
* * * *
23777172 ATCGGCCCGAT-CCCCCAGCGTGCTGTCGA
128 ACCAGCCCGGTACCCCCTGCGTGCTGTCGA
* * * * * * *
23777201 TCTTACTACCGCAACCCTCGATCCGATTCGATG-TTAGAC-TGGGAATGAACTCCGTATGC
1 TCCTGCTACCACAACCCTCG-TCCGGTTAG-GGCTTAGACAT-GGAATGAACTTCGTATGC
23777260 TTAGACTGGG
Statistics
Matches: 297, Mismatches: 66, Indels: 25
0.77 0.17 0.06
Matches are distributed among these distances:
156 2 0.01
157 62 0.21
158 111 0.37
159 120 0.40
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
TCCTGCTACCACAACCCTCGTCCGGTTAGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCC
AACCCACGAAATGAGCGTCCGGGAGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGACCACC
AGCCCGGTACCCCCTGCGTGCTGTCGA
Found at i:23777263 original size:26 final size:26
Alignment explanation
Indices: 23777234--23777285 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
23777224 CGATTCGATG
23777234 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
23777260 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
23777286 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:23777615 original size:26 final size:26
Alignment explanation
Indices: 23777586--23777638 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23777576 CCAGTCTGAT
*
23777586 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
23777612 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23777638 C
1 C
23777639 CTAAGCCAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23777959 original size:159 final size:156
Alignment explanation
Indices: 23777611--23778228 Score: 623
Period size: 158 Copynumber: 3.9 Consensus size: 156
23777601 AACTCTGTAT
* * * *
23777611 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCCACGAAACGAGCATACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
* * * * * * * * * *
23777676 CCGGTTGGAGAGGTAAAATGCACAAGTCGGGGACCAGCCCGATCCGCCCTGCGTGCTGTCAATCC
66 CCGGTCGGAGAGGCATAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
* *
23777741 TGCTGCCACAACCCTCGATCTGATCTGA
131 TGCTGCCACAA-CCTCGGTCTGA-CTGG
* * * * * * *
23777769 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATTAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCA
** *
23777833 GCCGGTCGGAGAGGCATAATGTGCAAGCCGAGGATCGGCCTGATCCCCCTCTACGTGCTGTCGAT
65 GCCGGTCGGAGAGGCATAATGCACAAGCCGAGGATCGGCCCGATCCCCC-CTACGTGCTGTCGAT
** *
23777898 CCCACTGCCACAATCCTCGGTCCGACTGGG
129 CCTGCTGCCACAA-CCTCGGTCTGACT-GG
* * *
23777928 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGTGTACAGGCACTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
* * * * * * ** * *
23777993 CCAGTCGGAGAGGCATAATACGCAAACCGGGGATCGG-CCGGTCCACTTCTGCGTGCTGCCGATC
66 CCGGTCGGAGAGGCATAATGCACAAGCCGAGGATCGGCCCGATCC-CCCCTACGTGCTGTCGATC
* *
23778057 TTGCTGCCACAACCATCGGTCTGGCTAGG
130 CTGCTGCCACAACC-TCGGTCTGACT-GG
*
23778086 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GCCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAG-CGTACGGGCACTCA
* * * * * * *
23778150 ACCGATCGGAGAGGCAGAATGCATAAGCC-AGGGATCGACCCGATCCCCCCTATGTGCTATCGAT
65 GCCGGTCGGAGAGGCATAATGCACAAGCCGA-GGATCGGCCCGATCCCCCCTACGTGCTGTCGAT
* *
23778214 CCTTCTGCCTCAACC
129 CCTGCTGCCACAACC
23778229 CTCTGTCCGG
Statistics
Matches: 373, Mismatches: 78, Indels: 18
0.80 0.17 0.04
Matches are distributed among these distances:
157 4 0.01
158 241 0.65
159 127 0.34
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
CCGGTCGGAGAGGCATAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
TGCTGCCACAACCTCGGTCTGACTGG
Found at i:23778197 original size:317 final size:316
Alignment explanation
Indices: 23777611--23778215 Score: 734
Period size: 317 Copynumber: 1.9 Consensus size: 316
23777601 AACTCTGTAT
* * *
23777611 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCCACGAAACGAGCATACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACAGGCACTCAG
* * * * ** * *
23777676 CCGGTTGGAGAGGTAAAATGCACAAGTCGGGGACCAGCCCGATCCGCCCTGCGTGCTGTCAATCC
66 CCAGTCGGAGAGGCAAAATACACAAACCGGGGACCAGCCCGATCCACCCTGCGTGCTGCCAATCC
* * * * *
23777741 TGCTGCCACAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
131 TGCTGCCACAACCATCGATCTGAGCTGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * * ** *
23777806 CCCATTAAACGAGCGTGCGGGCGCTGAGCCGGTCGGAGAGGCATAATGTGCAAGCCGAGGATCGG
196 CCCATGAAACGAGCGTACGGGCGCTCAACCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGA
* *
23777871 CCTGATCCCCCTCTACGTGCTGTCGATCCCACTGCCACAATCCTCGGTCCGACTGGG
261 CCCGATCCCCC-CTACGTGCTATCGATCCCACTGCCACAATCCTCGGTCCGACTGGG
* ** *
23777928 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGTGTACAGGCACTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACAGGCACTCAG
* * * * * * *
23777993 CCAGTCGGAGAGGCATAATACGCAAACCGGGGATC-GGCCGGTCCACTTCTGCGTGCTGCCGATC
66 CCAGTCGGAGAGGCAAAATACACAAACCGGGGACCAGCCCGATCCAC-CCTGCGTGCTGCCAATC
* * *
23778057 TTGCTGCCACAACCATCGGTCTG-GCTAGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGC
130 CTGCTGCCACAACCATCGATCTGAGCT-GAGCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGC
*
23778120 CAACCCATGAAACG-GCCGTACGGGCGCTCAACCGATCGGAGAGGCAGAATGCATAAGCC-AGGG
193 CAACCCATGAAACGAG-CGTACGGGCGCTCAACCGATCGGAGAGGCAGAATGCACAAGCCGA-GG
*
23778183 ATCGACCCGATCCCCCCTATGTGCTATCGATCC
256 ATCGACCCGATCCCCCCTACGTGCTATCGATCC
23778216 TTCTGCCTCA
Statistics
Matches: 240, Mismatches: 43, Indels: 11
0.82 0.15 0.04
Matches are distributed among these distances:
316 27 0.11
317 212 0.88
318 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACAGGCACTCAG
CCAGTCGGAGAGGCAAAATACACAAACCGGGGACCAGCCCGATCCACCCTGCGTGCTGCCAATCC
TGCTGCCACAACCATCGATCTGAGCTGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAA
CCCATGAAACGAGCGTACGGGCGCTCAACCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGA
CCCGATCCCCCCTACGTGCTATCGATCCCACTGCCACAATCCTCGGTCCGACTGGG
Found at i:23778995 original size:26 final size:26
Alignment explanation
Indices: 23778956--23779009 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
23778946 GTGCACCGTG
23778956 GCTTAGACTGGGAATGAACTCCATAT
1 GCTTAGACTGGGAATGAACTCCATAT
*
23778982 GCTTAGACAT-GGAATGAACTCCGTAT
1 GCTTAGAC-TGGGAATGAACTCCATAT
23779008 GC
1 GC
23779010 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCATAT
Found at i:23779281 original size:159 final size:159
Alignment explanation
Indices: 23778983--23779364 Score: 355
Period size: 159 Copynumber: 2.4 Consensus size: 159
23778973 ACTCCATATG
* * *
23778983 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTACGGGCACTCAGC
* * *
23779048 CGGCCAGAGAGGCAGAATGCTCAAGCCGGGGATCGACCTGGTTCCCCCCTGCATGTTGTCGATCC
66 CGGCCAGAGAGGCAGAATACGCAAGCCGGGGATCGACCTGGTTCCCCCCTGCATGCTGTCGATCC
* * *
23779113 TACTGCCACAACCCTTGGTCCTGTCCGAT
131 GACTACCACAACCCTCGGTCCTGTCCGAT
** * ** *
23779142 CTTAGAC-TGGGAATGAACTTTGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTACGGGCACTCAG
** * * * *
23779206 CCGATC-GAAGAGGCATAATACGCAAGCTGGGGATCGGCCTGG-TCCCCCTCTGCGTGCTGAT-G
65 CCGGCCAG-AGAGGCAGAATACGCAAGCCGGGGATCGACCTGGTTCCCCC-CTGCATGCTG-TCG
* * * * **
23779268 GTCCGGCTACCACAACCCTCGGT-CTGGCTAGGG
127 ATCCGACTACCACAACCCTCGGTCCTGTC-CGAT
* * * * * *
23779301 CTTAGACATGGAATGAACTCCCTAT-AACTAAGCCAACCAATGAAACG-GTCGTGCGGGCACTCA
1 CTTAGACATGGAATGAACTCCGTATGCA-TAAGCCAACCCACGAAATGAG-CGTACGGGCACTCA
23779364 G
64 G
23779365 ACGGTCGTGC
Statistics
Matches: 176, Mismatches: 39, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
158 14 0.08
159 160 0.91
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTACGGGCACTCAGC
CGGCCAGAGAGGCAGAATACGCAAGCCGGGGATCGACCTGGTTCCCCCCTGCATGCTGTCGATCC
GACTACCACAACCCTCGGTCCTGTCCGAT
Found at i:23779506 original size:26 final size:26
Alignment explanation
Indices: 23779477--23779529 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23779467 TCAGTCCAAT
23779477 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
23779503 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
23779529 C
1 C
23779530 CTAAGTCCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23779864 original size:26 final size:26
Alignment explanation
Indices: 23779828--23779878 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
23779818 CTGGTCTGAT
23779828 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23779854 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
23779879 TTCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23780221 original size:26 final size:26
Alignment explanation
Indices: 23780183--23780235 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23780173 CCGGTCCAAT
*
23780183 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23780209 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23780235 C
1 C
23780236 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23780722 original size:26 final size:26
Alignment explanation
Indices: 23780681--23780733 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23780671 CCGGTTCGAT
23780681 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
** *
23780707 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
23780733 C
1 C
23780734 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:23780800 original size:854 final size:852
Alignment explanation
Indices: 23779642--23781639 Score: 2826
Period size: 853 Copynumber: 2.3 Consensus size: 852
23779632 TGTCGGTCCT
* *
23779642 GCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAAC
1 GCTGCCACAACCCTCAGT-CGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * *
23779707 CCACGAAACGTGCGTGCGGGCACTCAGCCAGTCGGAGAGGCAGAATTCGTAAGCCAGGGATCGGC
65 CCACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC
* * * * *
23779772 TCGGTCCCCTCTGCGTGCTGTCAAACCTACTGTCGCAACCCTCGGTCTGG-TCTGATCTTAGACT
130 TCGATCCCC-CTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCAGTCTGGTTC-GATCTTAGACT
** *
23779836 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATTTCTAAGTCAACCTACGAAACG
193 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * *
23779901 AGCGTGCGGGTGCTCAGCCAACGGAGAGGCTAGCTGGAGAGGCATAATGCGCAAGCCAGGGATCA
258 AGCGTGCGGGCGCTCAGCCGACGGAGAGGCTAGCCGGAGAGGCATAATGCGCAAGCCAGGGATCA
* *
23779966 GCCCGGTCCCCCTCTGGGTGCTGCCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAAC
323 GCCCGGTCCCCCTCTGCGTGCTGCCACAACCCTCGATCCGGCT-GGGCTTAGACATGGAATGAAC
* *
23780031 TCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAAT
387 TCCGTATGCCTAAGCCAACCCATAAAACGAGCATGCGGGCGCTCAACCGACCGGAGAGGCAGAAT
* * * *
23780096 GCAAAAGCCGGGGATCGA-CGCAGTCCCACCTGCGTGCTGTCGATCCTGCTACTGGTATTGCTGT
452 GCAAAAGCCGGGGATCGATC-CAGTCCCACCTACGTGCTGTCGATCCTACTACTGGTACTGCTGC
* * * * *
23780160 CGTAACCCTCGGACCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGA
516 CGCAACCCTCGGACCGGT-CAATCCTAGACTAGGAATGAACTCCGTATGCTTAGACATCGAATGA
* *
23780225 ACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGT-GGACGCTCAA-TCAACTAGAGAGATA
580 ACTCCGTATGCCTAAGCCAACCCACGAAACG-A-GTGTAGGACGCTCAACT-AACTAGAGAGACA
* * ** *
23780288 GAATGCGCAAGCCG-GGGACTGGCTTGATCCCCCCT-GCGTGCTGTCGATCCTACTATCACAACC
642 GAATGCGCAAGCCGAGGGACCGACCCGAT-CCCCCTAGCGTGCTGTCGATCCTACTACCACAACC
*
23780351 CTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAACTCAACCCATGAAATGAG
706 CTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAACTCAACCCATGAAACGAG
* * * ** * *
23780416 CGTGCGGGCATTGAGTCGGTC-GAGAGGCATAATGCGTTAA-CCGAGGATCGACTCGGT-CCCTT
771 CGTGCGGGCACTGAGCCGGCCGGAGAGGCATAATGC-ACAAGCCGAGGATCGACCCGGTCCCCCT
*
23780478 CTGCATGCTGCCAGCCCC
835 CTGCATGCTACCAGCCCC
* *
23780496 GCTGCCACAACCCTCAGTCTGGCTGGGGCATAGATATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCAGTC-GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * *
23780561 CCACGAAACGGGCGTGCAGGCGCCCAGCCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGC
65 CCACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC
* * *
23780626 TCGATCCCCCTGCGTGCTGTCGATCCTGTTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTGG
130 TCGATCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCAGTCTGGTTCGATCTTAGACTGG
* *
23780691 AAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
195 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * *
23780756 CGTGCGGGCGCTCAGCCGACTGGAGAGGTTGGCCGGAGAGGCATAATGCGCAAGCTAGGGATCAG
260 CGTGCGGGCGCTCAGCCGAC-GGAGAGGCTAGCCGGAGAGGCATAATGCGCAAGCCAGGGATCAG
* *
23780821 CCCGGTCCCCCTCTGCGTGCTGCCACAACCCTCGGTCTGGCTGGGCTTAGACATGGAATGAACTC
324 CCCGGTCCCCCTCTGCGTGCTGCCACAACCCTCGATCCGGCTGGGCTTAGACATGGAATGAACTC
* * * * *
23780886 CGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGCTGGCCGGAGAGGTAGAATGC
389 CGTATGCCTAAGCCAACCCATAAAACGAGCATGCGGGCGCTCAACCGACCGGAGAGGCAGAATGC
* * * * * *
23780951 ACAAGCTGGGGATCGATCCGGTCCCCCCTACGTGCTGTCGATCCTACTGCTGGTCCTGCTGCCGC
454 AAAAGCCGGGGATCGATCCAGTCCCACCTACGTGCTGTCGATCCTACTACTGGTACTGCTGCCGC
**
23781016 AACCCTCGTTCCGGTCAATCCTAGACTAGGAATGAACTCCGTATGCTTAGACATCGAATGAACTC
519 AACCCTCGGACCGGTCAATCCTAGACTAGGAATGAACTCCGTATGCTTAGACATCGAATGAACTC
* ** * *
23781081 CGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTCAACTGGCTGGAGAGGCAGAATGC
584 CGTATGCCTAAGCCAACCCACGAAACGAGTGTA-GGACGCTCAACTAACTAGAGAGACAGAATGC
* * * *
23781146 GCAAGTCGAGGGACCGACCCGATCCCCCTAGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTC
648 GCAAGCCGAGGGACCGACCCGATCCCCCTAGCGTGCTGTCGATCCTACTACCACAACCCTTGGTC
** *
23781211 TGGTCTGATCTTAGACTTTGAATGAAGTTTGTATGCCTAACTCAACCCATGAAACGAGCGTGCGG
713 TGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAACTCAACCCATGAAACGAGCGTGCGG
* * * *
23781276 GCGCTGAGCCGGCCGGAGAGGCATAATGCACAAGCTGGGGATCGACCCGGTCCCCCTCTGCGTGC
778 GCACTGAGCCGGCCGGAGAGGCATAATGCACAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGC
*
23781341 TACCAGTCCC
843 TACCAGCCCC
*
23781351 GCTGCCACAACCCTCAGTCGGCTGGGTCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 GCTGCCACAACCCTCAGTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * *
23781416 CATGAAACGGGTGTGCGGGCGCTCAGACGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACT
66 CACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCT
** ** * *
23781481 CGATCCCCCCTATGTGCTACCGATCCTGCTGTCGCAACCCTTAGTCTGGTCCGATCTTAGACTGG
131 CGAT-CCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCAGTCTGGTTCGATCTTAGACTGG
*
23781546 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
195 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* *
23781611 CGTGCGGACGCTCAGCCGACCAGAGAGGC
260 CGTGCGGGCGCTCAGCCGA-CGGAGAGGC
23781640 AGGATACGCA
Statistics
Matches: 1012, Mismatches: 118, Indels: 27
0.87 0.10 0.02
Matches are distributed among these distances:
850 4 0.00
851 1 0.00
852 108 0.11
853 386 0.38
854 337 0.33
855 175 0.17
856 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (852 bp):
GCTGCCACAACCCTCAGTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCT
CGATCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCAGTCTGGTTCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
GTGCGGGCGCTCAGCCGACGGAGAGGCTAGCCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCC
CGGTCCCCCTCTGCGTGCTGCCACAACCCTCGATCCGGCTGGGCTTAGACATGGAATGAACTCCG
TATGCCTAAGCCAACCCATAAAACGAGCATGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCAA
AAGCCGGGGATCGATCCAGTCCCACCTACGTGCTGTCGATCCTACTACTGGTACTGCTGCCGCAA
CCCTCGGACCGGTCAATCCTAGACTAGGAATGAACTCCGTATGCTTAGACATCGAATGAACTCCG
TATGCCTAAGCCAACCCACGAAACGAGTGTAGGACGCTCAACTAACTAGAGAGACAGAATGCGCA
AGCCGAGGGACCGACCCGATCCCCCTAGCGTGCTGTCGATCCTACTACCACAACCCTTGGTCTGG
TCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAACTCAACCCATGAAACGAGCGTGCGGGCA
CTGAGCCGGCCGGAGAGGCATAATGCACAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTAC
CAGCCCC
Found at i:23781355 original size:159 final size:159
Alignment explanation
Indices: 23781061--23781562 Score: 577
Period size: 158 Copynumber: 3.2 Consensus size: 159
23781051 ACTCCGTATG
* * * * *
23781061 CTTAGACATCGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTCAAC
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGC
* * * * **
23781126 TGGCTGGAGAGGCAGAATGCGCAAG-TCGAGGGACCGACCCGATCCCCCT-AGCGTGCTGTCGAT
66 CGGCCGGAGAGGCAGAATGCGCAAGCT-G-GGGATCGACCCGATCCCCCTCTGCGTGCTACCGAT
*
23781189 CCTGCTGCCGCAACCCTTGGTCTGGTCTGAT
129 CCTGCTGCCGCAACCCTTAGTCTGGTCTGAT
* * ** * *
23781220 CTTAGACTTTGAATGAAGTTTGTATGCCTAA-CTCAACCCATGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGC-CAACCCATGAAACGAGTGTGCGGGCGCTCAG
* * *
23781284 CCGGCCGGAGAGGCATAATGCACAAGCTGGGGATCGACCCGGTCCCCCTCTGCGTGCTACC-AGT
65 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTACCGA-T
* * * *
23781348 CCCGCTGCCACAACCCTCAGTC-GG-CTGGGT
129 CCTGCTGCCGCAACCCTTAGTCTGGTCT-GAT
* * * *
23781378 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAGA
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGC
* * * **
23781443 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCCCC-CTATGTGCTACCGATCC
66 CGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTACCGATCC
* *
23781507 TGCTGTCGCAACCCTTAGTCTGGTCCGAT
131 TGCTGCCGCAACCCTTAGTCTGGTCTGAT
*
23781536 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTTGGAATGAACTCCGTATGC
23781563 TTAGACTGGG
Statistics
Matches: 283, Mismatches: 51, Indels: 19
0.80 0.14 0.05
Matches are distributed among these distances:
157 31 0.11
158 147 0.52
159 104 0.37
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTACCGATCC
TGCTGCCGCAACCCTTAGTCTGGTCTGAT
Found at i:23781565 original size:26 final size:26
Alignment explanation
Indices: 23781536--23781588 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23781526 CTGGTCCGAT
23781536 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23781562 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23781588 C
1 C
23781589 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23782870 original size:159 final size:158
Alignment explanation
Indices: 23782291--23782887 Score: 587
Period size: 159 Copynumber: 3.8 Consensus size: 158
23782281 AACTCCGTAT
* * * * * *
23782291 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
* * * *
23782356 CCGGCC-AGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCTCCTACGTGCTGTCGAT
66 CCGGCCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTTCTGCGTGCTGTCGGT
** *
23782420 CCTGCTACTGCAACCTTCAGTCTGTA--TG
130 CCTGCTACCACAACCCTCAGTCTG-ACGTG
* * * * * * *
23782448 ATCTTAGAC-TGGCAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCACTG
1 -GCTTAGACATGG-AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTC
* * * * * *** * *
23782512 TGCCGGCCGAAGAGGCATAATGCGCAAGTCGAGGAACGGTTTGGTCCCCCTCTGCATGCTGTCGG
64 AGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTTCTGCGTGCTGTCGG
* * * *
23782577 T-CTCGCTGCCACAACCCTC-GACCTGGCTGGG
129 TCCT-GCTACCACAACCCTCAG-TCTGAC-GTG
* * * * ** *
23782608 GATTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTGAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
* * * *
23782673 CTGGCCGAAGAGGCATAATGCGCAAGTCGGGGACCGGCCCGGTCCCCTTCTGCGTGCTGTCGGTC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTTCTGCGTGCTGTCGGTC
23782738 CTGCTACCACAACCCTCAGTCTGACCGTG
131 CTGCTACCACAACCCTCAGTCTGA-CGTG
* * * *
23782767 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTATGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
* * * * *
23782832 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGTTCGGCCCGGT-CCCTGCTGCGTGC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTTCTGCGTGC
23782888 AACCGATCCT
Statistics
Matches: 359, Mismatches: 69, Indels: 22
0.80 0.15 0.05
Matches are distributed among these distances:
157 6 0.02
158 128 0.36
159 217 0.60
160 8 0.02
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTTCTGCGTGCTGTCGGTC
CTGCTACCACAACCCTCAGTCTGACGTG
Found at i:23782911 original size:317 final size:316
Alignment explanation
Indices: 23782293--23782914 Score: 697
Period size: 317 Copynumber: 2.0 Consensus size: 316
23782283 CTCCGTATGC
* ** *
23782293 TTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAATGAGCGTGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACAAAACGAGCGTGCGGGCGCTCAGCC
* *
23782358 GGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCTCCTACGTGCTGTCGATCCT
66 GGCCAGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCGGTCCCCTCCTACGTGCTGTCGATCCT
** * * * *
23782423 GCTACTGCAACCTTCAGTCTGTATGATCTTAGACTGGCAATGAACTCCGTATGCATAAGTCAACC
131 GCTACCACAACCCTCAGTCTGTATGAGCTTAGACTGGCAATGAACTCCCTATGCATAAGCCAACC
*** * * **
23782488 CACGAAACGAGCGTACGGGCACTGTGCCGGCCGAAGAGGCATAATGCGCAAGTCGAGGAACGGTT
196 CACGAAACGAGCGTACGGGCACTCAACCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGAACGGCC
* *** *
23782553 TGGTCCCCCTCTGCATGCTGTCGGTCTCGCTGCCACAACCCTCGACCTGGCTGGGGA
261 CGGT-CCCCTCTGCATGCAACCGATCTCGCTGCCACAACCCTCGACCTGGCTGGGGA
* *
23782610 TTAGACATGGAATGAACTCCCTATGCCTAAG-TCAACCCACAAAACGAGCGTGCGGGTGCTGAGC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCT-AACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
23782674 TGGCC-GAAGAGGCATAATGCGCAAGTCGGGGACCGGCCCGGTCCCCTTCTGCGTGCTGTCGGTC
65 CGGCCAG-AGAGGCAGAATGCGCAAGCCGGGGACCGGCCCGGTCCCCTCCTACGTGCTGTCGATC
*
23782738 CTGCTACCACAACCCTCAGTCTG-ACCGTG-GCTTAGACATGG-AATGAACTCCCTATGCCTAAG
129 CTGCTACCACAACCCTCAGTCTGTA---TGAGCTTAGAC-TGGCAATGAACTCCCTATGCATAAG
* * *
23782800 CCAACCCACGAAATG-G-GTATGCGGGCACTCAACCGGTCGGAGAGGCAGAATGCGCAAGCC-AG
190 CCAACCCACGAAACGAGCGTA--CGGGCACTCAACCGGCCGAAGAGGCAGAATGCGCAAGCCGA-
** * * *
23782862 GGTTCGGCCCGGT-CCCTGCTGCGTGCAACCGATC-CTGCTTCCGCAACCCTCGA
252 GGAACGGCCCGGTCCCCT-CTGCATGCAACCGATCTC-GCTGCCACAACCCTCGA
23782915 TCCGGTCTGA
Statistics
Matches: 253, Mismatches: 41, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
316 11 0.04
317 158 0.62
318 79 0.31
319 5 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (316 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACAAAACGAGCGTGCGGGCGCTCAGCC
GGCCAGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCGGTCCCCTCCTACGTGCTGTCGATCCT
GCTACCACAACCCTCAGTCTGTATGAGCTTAGACTGGCAATGAACTCCCTATGCATAAGCCAACC
CACGAAACGAGCGTACGGGCACTCAACCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGAACGGCC
CGGTCCCCTCTGCATGCAACCGATCTCGCTGCCACAACCCTCGACCTGGCTGGGGA
Found at i:23783713 original size:159 final size:159
Alignment explanation
Indices: 23783537--23783903 Score: 461
Period size: 158 Copynumber: 2.3 Consensus size: 159
23783527 AGCCGGCCTG
* * * *
23783537 AGAGGCATAATGCGCAAGCCGAAGATCGGCCTGG-CCCTCCTCTGCGTGCTACCGGTCCTGCTGC
1 AGAGGCAGAATGCGCAAGCCGAAGATCGGCCTGGTACC-CC-CTGCGTGCTACCGATCCCGCTGC
* * *
23783601 CACAACCCTCGATCTGGCTGTGGCTTAGACATGAAATGAACTCCCTATCCCTAAGCCAACTCATG
64 CACAACCCTCGATCTGGCTGGGGCTCAGACATGAAATGAACTCCCTATCCCTAAGCCAACCCATG
*
23783666 AAACGGGCGCGC-GGGCTCTCAGCTGGCCGA
129 AAACGGGCGCGCAGGGCGCTCAGCTGGCCGA
* * * * *
23783696 AGAGGCAGAATGGGCAAGCCGAGGATCAGCCCGGTACCCCCTGCGTGCTGCCGATCCCGCTGCCA
1 AGAGGCAGAATGCGCAAGCCGAAGATCGGCCTGGTACCCCCTGCGTGCTACCGATCCCGCTGCCA
* * * * *
23783761 CAGCCCTCGGTCTGGCTGGGGCTCAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCATGAA
66 CAACCCTCGATCTGGCTGGGGCTCAGACATGAAATGAACTCCCTATCCCTAAGCCAACCCATGAA
* * *
23783826 ACGGGCGTGCAGGGCGCTCAGCTGGTCGG
131 ACGGGCGCGCAGGGCGCTCAGCTGGCCGA
* * * *
23783855 AGAGGCAGAATGCGCAAG-CTAGAGATCGGCCTAGTCCCCCCTACGTGCT
1 AGAGGCAGAATGCGCAAGCCGA-AGATCGGCCTGGTACCCCCTGCGTGCT
23783904 GCTGATCCTG
Statistics
Matches: 176, Mismatches: 29, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
158 90 0.51
159 84 0.48
160 2 0.01
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.17
Consensus pattern (159 bp):
AGAGGCAGAATGCGCAAGCCGAAGATCGGCCTGGTACCCCCTGCGTGCTACCGATCCCGCTGCCA
CAACCCTCGATCTGGCTGGGGCTCAGACATGAAATGAACTCCCTATCCCTAAGCCAACCCATGAA
ACGGGCGCGCAGGGCGCTCAGCTGGCCGA
Found at i:23783894 original size:158 final size:157
Alignment explanation
Indices: 23783319--23783911 Score: 494
Period size: 159 Copynumber: 3.7 Consensus size: 157
23783309 TTAGACGTAG
* * * ** * ***
23783319 AATGAACTCCGTATGCCTAAGCCAACACATGAAACGAACGTGCGGGCACTCAGCCAACCGGAGAG
1 AATGAACTCCCTATGCCTAAGCTAACCCATGAAACGGGCGTGCGGGCGCTCAGCTGGCCGGAGAG
* * * * * * * * *** * *
23783384 GCAGAATGTGCAAGCCAGGGACCGACCCGATCCCCCCTGCGTGCTGTCGATGATGCTACCGCAAC
66 GCAGAATGCGCAAGCC-GAGATCGGCCTGGTACCCCCTGCGTGCTGCCGATCCCGCTGCCACAAC
* * ** * *
23783449 CTTCGATCTGG-TCCGATCTTAG--ATGGG
130 CCTCGATCTGGCT-GGGGCTCAGACAT-GA
* ** * * * * * * *
23783476 AATCAACTCTGTATGCCTAAG-TCAACCCATGAAATGAGTGTGCGGGCGTTGAGCCGGCCTGAGA
1 AATGAACTCCCTATGCCTAAGCT-AACCCATGAAACGGGCGTGCGGGCGCTCAGCTGGCCGGAGA
* * * * *
23783540 GGCATAATGCGCAAGCCGAAGATCGGCCTGG-CCCTCCTCTGCGTGCTACCGGTCCTGCTGCCAC
65 GGCAGAATGCGCAAGCCG-AGATCGGCCTGGTACC-CC-CTGCGTGCTGCCGATCCCGCTGCCAC
* *
23783604 AACCCTCGATCTGGCTGTGGCTTAGACATGA
127 AACCCTCGATCTGGCTGGGGCTCAGACATGA
* * * * * *
23783635 AATGAACTCCCTATCCCTAAGCCAACTCATGAAACGGGCGCGCGGGCTCTCAGCTGGCCGAAGAG
1 AATGAACTCCCTATGCCTAAGCTAACCCATGAAACGGGCGTGCGGGCGCTCAGCTGGCCGGAGAG
* * * *
23783700 GCAGAATGGGCAAGCCGAGGATCAGCCCGGTACCCCCTGCGTGCTGCCGATCCCGCTGCCACAGC
66 GCAGAATGCGCAAGCCGA-GATCGGCCTGGTACCCCCTGCGTGCTGCCGATCCCGCTGCCACAAC
* *
23783765 CCTCGGTCTGGCTGGGGCTCAGACATGG
130 CCTCGATCTGGCTGGGGCTCAGACATGA
*
23783793 AATGAACTCCCTATGCCTAAGCTAACCCATGAAACGGGCGTGCAGGGCGCTCAGCTGGTCGGAGA
1 AATGAACTCCCTATGCCTAAGCTAACCCATGAAACGGGCGTGC-GGGCGCTCAGCTGGCCGGAGA
* * * * *
23783858 GGCAGAATGCGCAAGCTAGAGATCGGCCTAGTCCCCCCTACGTGCTGCTGATCC
65 GGCAGAATGCGCAAGC-CGAGATCGGCCTGGTACCCCCTGCGTGCTGCCGATCC
23783912 TGTTGTCACA
Statistics
Matches: 347, Mismatches: 77, Indels: 22
0.78 0.17 0.05
Matches are distributed among these distances:
156 4 0.01
157 74 0.21
158 126 0.36
159 137 0.39
160 6 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
AATGAACTCCCTATGCCTAAGCTAACCCATGAAACGGGCGTGCGGGCGCTCAGCTGGCCGGAGAG
GCAGAATGCGCAAGCCGAGATCGGCCTGGTACCCCCTGCGTGCTGCCGATCCCGCTGCCACAACC
CTCGATCTGGCTGGGGCTCAGACATGA
Found at i:23784773 original size:26 final size:26
Alignment explanation
Indices: 23784735--23784787 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23784725 GGCTCAAAAT
23784735 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
23784761 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
23784787 C
1 C
23784788 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:23784948 original size:26 final size:26
Alignment explanation
Indices: 23784919--23784971 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23784909 CCGGTCTGAT
*
23784919 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23784945 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23784971 C
1 C
23784972 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23785282 original size:158 final size:159
Alignment explanation
Indices: 23785072--23785383 Score: 430
Period size: 158 Copynumber: 2.0 Consensus size: 159
23785062 ATGCTATCTG
* * * *
23785072 TCCCGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGGCATGGAATGAACTCCCTATGCCTAAGC
1 TCCCGCTACCACAACCCCCGATCTGGCTGGGGCTCAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * *
23785137 CAACCCACGAAA-TGG-GCGCACGGGTGCTCAGCTGGTCGAAAAGGCAGAATGGGCAAGCCGGGG
66 CAACCCACGAAACAGGCGCGCA-GGGCGCTCAGCTGGTCGAAAAGGCAGAATGCGCAAGCCAGAG
*
23785200 ATCGGCCCAGTACCCCCTGCATGCTGCCGA
130 ATCGACCCAGTACCCCCTGCATGCTGCCGA
* *
23785230 TCCCGCTGCCACAGCCCCCGATCTGGCTGGGGCTCAGACATGGAATGAACTCCCTATGCCTAAGC
1 TCCCGCTACCACAACCCCCGATCTGGCTGGGGCTCAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * *
23785295 CAACCCATGAAACAGGCGTGCAGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAGCCAGAGT
66 CAACCCACGAAACAGGCGCGCAGGGCGCTCAGCTGGTCGAAAAGGCAGAATGCGCAAGCCAGAGA
* *
23785360 TCGACCCAGTCCCCCCTGCGTGCT
131 TCGACCCAGTACCCCCTGCATGCT
23785384 ACTGATCCTG
Statistics
Matches: 133, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
158 70 0.53
159 59 0.44
160 4 0.03
ACGTcount: A:0.22, C:0.33, G:0.29, T:0.16
Consensus pattern (159 bp):
TCCCGCTACCACAACCCCCGATCTGGCTGGGGCTCAGACATGGAATGAACTCCCTATGCCTAAGC
CAACCCACGAAACAGGCGCGCAGGGCGCTCAGCTGGTCGAAAAGGCAGAATGCGCAAGCCAGAGA
TCGACCCAGTACCCCCTGCATGCTGCCGA
Found at i:23785556 original size:132 final size:133
Alignment explanation
Indices: 23785290--23785540 Score: 308
Period size: 132 Copynumber: 1.9 Consensus size: 133
23785280 TCCCTATGCC
* ** *
23785290 TAAGCCAACCCATGAAACAGGCGTGCAGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAGCC
1 TAAGCCAACCCACGAAACAGGCGTGCAGGGCGCTCAGCCAGTCAGAGAGGCAGAATGCGCAAGCC
* * * * * **
23785355 AGAGTTCGACCCAGTCCCCCCTGCGTGCTACTGATCCTGTTGTCACAACCCTCGAATCGATTCGA
66 AGAGATCGACCCAGTCCCCCCAGCATGCTACTAATCCTGCTACCACAACCCTCGAATCGATTCGA
23785420 TCT
131 TCT
*
23785423 TAAGCCAACCCACGAAACAGGCGTGCA-GGCGCTCAGCCAGTCAGAGAGGCAGAATGCGCAAGTC
1 TAAGCCAACCCACGAAACAGGCGTGCAGGGCGCTCAGCCAGTCAGAGAGGCAGAATGCGCAAGCC
* * * * * * *
23785487 GGGGATCGGCCCGGTCCCCCCAGCATGCT-GTCAATCCTGCTACCGCACCCCTCG
66 AGAGATCGACCCAGTCCCCCCAGCATGCTACT-AATCCTGCTACCACAACCCTCG
23785541 GTCTGGTTCG
Statistics
Matches: 98, Mismatches: 19, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
131 1 0.01
132 71 0.72
133 26 0.27
ACGTcount: A:0.23, C:0.34, G:0.27, T:0.16
Consensus pattern (133 bp):
TAAGCCAACCCACGAAACAGGCGTGCAGGGCGCTCAGCCAGTCAGAGAGGCAGAATGCGCAAGCC
AGAGATCGACCCAGTCCCCCCAGCATGCTACTAATCCTGCTACCACAACCCTCGAATCGATTCGA
TCT
Found at i:23786369 original size:273 final size:273
Alignment explanation
Indices: 23785905--23786411 Score: 757
Period size: 273 Copynumber: 1.9 Consensus size: 273
23785895 CGGTCTAGTT
* * *
23785905 CGATCTTAGACTGGGAATGAACTCCATATGCTTATACATGGAATGAACTCCGTATGCCTAAGCCA
1 CGATCTTAGACTGGGAACGAACTCCATATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCA
* * * *
23785970 ACCCACGAAACGAGCGTATAGGCACTCAGCCGGCAGGAGAGGTAGAATGCACAAGCCGTGGCCCG
66 ACCCACGAAACGAGCGTACAGGCACTCAGCCGACAGGAGAGGTAGAATGCACAAGCCGTGGACAG
* * * * *
23786035 GCTCGGTCCCCCCTGCATGCTGTCGATCCTGCTACTGTAACCCTCGGTTTGGTTCGATCTTAGAC
131 GCCCGGTCCCCCCTACATGCTGTCGATCCTGCTACCGTAACCCTCAGTCTGGTTCGATCTTAGAC
* *
23786100 TGGGATTGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCATGCTAGTCCTACTGACGCTAC
196 TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCTAGTCCTACTGACGCTAC
23786165 CCTCGATCCGGTC
261 CCTCGATCCGGTC
*
23786178 CGATCTTAGACTGGGAACGAACTCTATATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCA
1 CGATCTTAGACTGGGAACGAACTCCATATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCA
* * * * * * *
23786243 ACCCATGAAATGAGTGTCCGGGCACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCAG-GGACA
66 ACCCACGAAACGAGCGTACAGGCACTCAGCCGACAGGAGAGGTAGAATGCACAAGCC-GTGGACA
* *
23786307 GGCCCGGTCCCGCCTACGTGCTGTCGATCCTGCTACCGTAACCCTCAGTCTGG-TCTGATCTTAG
130 GGCCCGGTCCCCCCTACATGCTGTCGATCCTGCTACCGTAACCCTCAGTCTGGTTC-GATCTTAG
*
23786371 ACTGGGAATGAACTCTGTATGCTTAAGTCAACCCACGAAAC
194 ACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAC
23786412 AAACATTCGG
Statistics
Matches: 207, Mismatches: 25, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
272 2 0.01
273 204 0.99
274 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.22
Consensus pattern (273 bp):
CGATCTTAGACTGGGAACGAACTCCATATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCA
ACCCACGAAACGAGCGTACAGGCACTCAGCCGACAGGAGAGGTAGAATGCACAAGCCGTGGACAG
GCCCGGTCCCCCCTACATGCTGTCGATCCTGCTACCGTAACCCTCAGTCTGGTTCGATCTTAGAC
TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCTAGTCCTACTGACGCTAC
CCTCGATCCGGTC
Found at i:23792684 original size:26 final size:26
Alignment explanation
Indices: 23792655--23792707 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23792645 TCGATCCGAT
23792655 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
23792681 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23792707 C
1 C
23792708 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23794336 original size:26 final size:26
Alignment explanation
Indices: 23794307--23794359 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23794297 CCGGTCTGAT
23794307 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
23794333 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23794359 C
1 C
23794360 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23795253 original size:158 final size:158
Alignment explanation
Indices: 23794944--23795476 Score: 466
Period size: 158 Copynumber: 3.4 Consensus size: 158
23794934 TTGTTGCTGG
* *
23794944 TCCTACTGTCGCAACCCTCGGTCCGGTCTGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGC
1 TCCTACTGTCGAAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * ** * * *
23795009 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGTAGAATGCGTAAGCCAGGAAC
66 CAACCCACGAAACGAGCGTACAGGCGCTCAGCCGACCGGAGAGGAAAAATGCGCAAGCCAGGAAC
23795074 CAGCCCGATCCCCCTTACGTGCTGTCGA
131 CAGCCCGATCCCCCTTACGTGCTGTCGA
* ** * *
23795102 TCCTATTGTCGAAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
1 TCCTACTGTCGAAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
23795167 TAACCCACGAAACGAGCGTACAGGCGCTGAGCCGACCGGAGAGGAAAAATGCGCAAGCCGGGGA-
66 CAACCCACGAAACGAGCGTACAGGCGCTCAGCCGACCGGAGAGGAAAAATGCGCAAGCCAGGAAC
** * * * * *
23795231 TTGCCTGGTCCTCCTCTGCGTGCTG-CCA
131 CAGCCCGATCCCCCT-TACGTGCTGTCGA
* * * ** *
23795259 GTCCCACTG-CCACAACCCTCGGTCCTG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCT
1 -TCCTACTGTCGA-AACCCTCGGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCT
* * * * * * * * * *
23795321 AAGCCAACCCACAAAAC-AGGCTTGCGGGCACTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCG
62 AAGCCAACCCACGAAACGA-GCGTACAGGCGCTCAGCCGACCGGAGAGGAAAAATGCGCAAGCCA
* * * * * **
23795385 GGGATCGGCCCGGTCCCCCCTACGTGCTACCGA
126 GGAACCAGCCCGATCCCCCTTACGTGCTGTCGA
* ** * * * * *
23795418 TCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAAACTAGGAATGAACTCCGTATGC
1 TCCTACTGTCGAAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
23795477 TTAGACTGGG
Statistics
Matches: 297, Mismatches: 67, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 18 0.06
158 264 0.89
159 15 0.05
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.19
Consensus pattern (158 bp):
TCCTACTGTCGAAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCCACGAAACGAGCGTACAGGCGCTCAGCCGACCGGAGAGGAAAAATGCGCAAGCCAGGAAC
CAGCCCGATCCCCCTTACGTGCTGTCGA
Found at i:23795411 original size:316 final size:317
Alignment explanation
Indices: 23794332--23795476 Score: 1011
Period size: 316 Copynumber: 3.6 Consensus size: 317
23794322 AACTCCGTAT
* *
23794332 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
** * ** * * * *
23794397 CTAGCCGGAGAGACAGAATGCGCAAGCTGGGGATCAACCCAAT-CCTCCTACGTGTTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCC
* * * * *
23794461 TGCTGTCGCAACCTTCGGTTCGATCCAATCTTAGACTGGGAATGAACTCTGTATGTCTAAGTCAA
131 TGCTGTCGAAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
* * * * * * * * * * *
23794526 CGCACGAAATGAGTGTTC-GAGCACTGAGCCAATCAGAGTGGCATAATGCTCAAGCCAGGGATCG
196 CCCACGAAATGAGCGTACAG-GCGCTGAGCCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCG
** * * ** * *
23794590 ACCCGGTTGTCCTCTGCCTGCTACCAGTCTCGTTGCCACAACACTCGGT-TTGACTGGG
260 A-CCGGTCCTCCTCTGCGTGCTACCAGTCCCACTGCCACAACCCTCGGTCCTGACTGGG
** * * * *
23794648 GCTTAGACATGGAATGAGTTCTCTATGCCTAAGCCAACCCACGAAACGGGGGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * * ** * *
23794713 TCGACCGGAGAGGCCGAATGCACAAGCCAGGGATAAGTTCGATCCCCTCTGCGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCC
* * * * * * * * *
23794778 TGCT-ACCACAACCCTCAG-TCCGACGGTTGCTTAGACAT-GGAGTGAACTCTGTATGCCTAAGC
131 TGCTGTCGA-AACCCTCGGTTCGGTCCGAT-CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGT
* * * * * * * *
23794840 CAACCCATGAAATGAGCATGCAGGTGCTCAGCCGACTGAAGAGGCAGAATGCACAAGCCGGGGAT
193 CAACCCACGAAATGAGCGTACAGGCGCTGAGCCGACCGGAGAGGCAAAATGCACAAGCCGGGGAT
* * * * *
23794905 CGATCCGATCC-CC-CTACGAGCTACCAATCTTGTTGCTGGTCCTACTGTCGCAACCCTCGGTCC
258 CGA-CCGGTCCTCCTCTGCGTGCTACC-A----G-T-C----CC-ACTGCCACAACCCTCGGTCC
* * *
23794968 GGTCT-GA
310 TGACTGGG
* * * *
23794975 TCTTAGGC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * * * * *
23795039 GCCGGTCGGAGAGGTAGAATGCGTAAGCCAGGAACCAGCCCGATCCCCCTTACGTGCTGTCGATC
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATC
** * * *
23795104 CTATTGTCGAAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTTA
130 CTGCTGTCGAAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
* * * *
23795169 ACCCACGAAACGAGCGTACAGGCGCTGAGCCGACCGGAGAGGAAAAATGCGCAAGCCGGGGATTG
195 ACCCACGAAATGAGCGTACAGGCGCTGAGCCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCG
*
23795234 -CCTGGTCCTCCTCTGCGTGCTGCCAGTCCCACTGCCACAACCCTCGGTCCTG-CTGGG
260 ACC-GGTCCTCCTCTGCGTGCTACCAGTCCCACTGCCACAACCCTCGGTCCTGACTGGG
* *
23795291 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC-AGGCTTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGA-GCGTGCGGGCGCTCA
* * * * **
23795355 GCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTACCGATC
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATC
** * * * * * *
23795420 CTGCTACCGCAACCCTCGATCCGGTCCGATCTTAAACTAGGAATGAACTCCGTATGC
130 CTGCTGTCGAAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGC
23795477 TTAGACTGGG
Statistics
Matches: 641, Mismatches: 160, Indels: 56
0.75 0.19 0.07
Matches are distributed among these distances:
315 12 0.02
316 266 0.41
317 112 0.17
318 2 0.00
320 1 0.00
321 2 0.00
322 2 0.00
323 1 0.00
325 2 0.00
326 7 0.01
327 215 0.34
328 19 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCC
TGCTGTCGAAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
CCCACGAAATGAGCGTACAGGCGCTGAGCCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGA
CCGGTCCTCCTCTGCGTGCTACCAGTCCCACTGCCACAACCCTCGGTCCTGACTGGG
Found at i:23795479 original size:26 final size:26
Alignment explanation
Indices: 23795450--23795500 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
23795440 CCGGTCCGAT
23795450 CTTAAACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
* * *
23795476 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAAACTAGGAATGAACTCCGTAT
23795501 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:23798197 original size:26 final size:26
Alignment explanation
Indices: 23798161--23798211 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
23798151 CCGGTCCGAT
*
23798161 CTTAGATTGGGAATGAACTCTGTATC
1 CTTAGACTGGGAATGAACTCTGTATC
*
23798187 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCTGTAT
23798212 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATC
Found at i:23798336 original size:184 final size:184
Alignment explanation
Indices: 23798015--23798410 Score: 533
Period size: 184 Copynumber: 2.2 Consensus size: 184
23798005 TGGACATGGA
** * * *
23798015 ATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCAGGTGCTCAACCGGTCAGAAAGG
1 ATGAACTCTGTATGCCTAAGTCAACCCATGAAACGGGCGTGCAGGTGCTCAACCGATCAGAAAGG
* * * **
23798080 CAGAATGCGCAAGCCGGAGATCGGCCTAGTCCTCCTTCCGTGCTGTCGATCCTGCTGCCATAACC
66 CAGAATGCGCAAGCCGGAGATCGCCCTAGTCCCCCCTCCGTGCTACCGATCCTGCTGCCATAACC
** * *
23798145 CTCAGTCCGGTCCGATCTTAGATTGGGAATGAACTCTGTATCCTTAGACTGGGG
131 CTCAGTCCAATCCGATCTTAGACTGGGAATGAACTCTGTATACTTAGACTGGGG
* * *
23798199 ATGAACTCTGTATGCCTAAGTCAACCCATGAAACGGGCTTGCAGGTGCTCAACCGATCGGAGAGG
1 ATGAACTCTGTATGCCTAAGTCAACCCATGAAACGGGCGTGCAGGTGCTCAACCGATCAGAAAGG
* * * * **
23798264 CAGAATGCGTAAGTCGGGGATCGACCCT-GTCCCCCCTGCGTGCTACCGATCCTGCTGCTGTAAC
66 CAGAATGCGCAAGCCGGAGATCG-CCCTAGTCCCCCCTCCGTGCTACCGATCCTGCTGCCATAAC
* ** *
23798328 CTTCAGTCCAATTTGATCTTAGACTGGGAATGAACTCTGTATACTTAGACTTGGG
130 CCTCAGTCCAATCCGATCTTAGACTGGGAATGAACTCTGTATACTTAGACTGGGG
23798383 ATGAACTCTGTATGCCTAAGTCAACCCA
1 ATGAACTCTGTATGCCTAAGTCAACCCA
23798411 CAAAATAAGC
Statistics
Matches: 184, Mismatches: 27, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
184 181 0.98
185 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.24
Consensus pattern (184 bp):
ATGAACTCTGTATGCCTAAGTCAACCCATGAAACGGGCGTGCAGGTGCTCAACCGATCAGAAAGG
CAGAATGCGCAAGCCGGAGATCGCCCTAGTCCCCCCTCCGTGCTACCGATCCTGCTGCCATAACC
CTCAGTCCAATCCGATCTTAGACTGGGAATGAACTCTGTATACTTAGACTGGGG
Found at i:23798386 original size:26 final size:26
Alignment explanation
Indices: 23798345--23798395 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23798335 CCAATTTGAT
23798345 CTTAGACTGGGAATGAACTCTGTATA
1 CTTAGACTGGGAATGAACTCTGTATA
23798371 CTTAGACTTGGG-ATGAACTCTGTAT
1 CTTAGAC-TGGGAATGAACTCTGTAT
23798396 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATA
Found at i:23799108 original size:158 final size:156
Alignment explanation
Indices: 23798527--23799114 Score: 452
Period size: 159 Copynumber: 3.7 Consensus size: 156
23798517 TGCCATTCCT
* *
23798527 ACTGCCACAACCCTCAGTCCGAC-GGGGCTTAGACATGGAATGACCTCCGTATGCCTAAGCCAAC
1 ACTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * ** * * * * *
23798591 CCATGAAATGAGCGTGCAGGCATTCAGCCGATCGGAGAGGTAGAATGTGCAAGTCGGGGATCGAC
66 CCATAAAACGAGCATGCGGGCGCTCAGCCGACCGGAAAGGCAGAATGCGCAAGTCAGGGATCGAC
* *
23798656 CTGATCCGCC-TCTACGTGCTGCCGGTCCC
131 C-G-TCC-CCTTCTGCGTGCTACCGGT-CC
* * * * *
23798685 GCTACCACAACCCTCGGTCC-AGCTGTGGCTTAGACATGGAATGATCTCCCTATGCCTAAGCCAA
1 ACTGCCACAACCCTCAGTCCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * *
23798749 CCCATAAAACGGGCATGCGGGTGCTCAGTCGGCCGGAGAGGCAGAATGCACAAG-CTAGGGATCG
65 CCCATAAAACGAGCATGCGGGCGCTCAGCCGACCGGAAAGGCAGAATGCGCAAGTC-AGGGATC-
* * * ** *
23798813 GCCCCGTCCCCTCCTGCGTGCTATCAATCTT
128 G-ACCGTCCCCTTCTGCGTGCTACCGGTC-C
* ** * * * * ** * * *
23798844 GCTGCCGTAACCCTCAGACTG-GTCCGATCTTAGAC-TGGGAATGAACTCCATATGCATAAGTCA
1 ACTGCCACAACCCTCAGTCCGACT-GGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCA
* * * * * * * ** * * *
23798907 ACCCACAAAATGAGCATGCCGACGCTGATCTGGTC-AAAGAGGCATAGTGCGCAAGTCAGGGATC
64 ACCCATAAAACGAGCATGCGGGCGCTCAGCCGACCGGAA-AGGCAGAATGCGCAAGTCAGGGATC
*
23798971 GACTCGTCCCCTTCTGCATGCTACCGGTACC
128 GAC-CGTCCCCTTCTGCGTGCTACCGGT-CC
* *
23799002 ACTGCCACAACCCTCGGTCCGACTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 ACTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* *
23799067 CCATAAAACGGGCATGCGGGCGCTCAACCGACCGGAAAGGCAGAATGC
66 CCATAAAACGAGCATGCGGGCGCTCAGCCGACCGGAAAGGCAGAATGC
23799115 ATAAGCCGAG
Statistics
Matches: 319, Mismatches: 94, Indels: 34
0.71 0.21 0.08
Matches are distributed among these distances:
157 2 0.01
158 124 0.39
159 188 0.59
160 3 0.01
161 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (156 bp):
ACTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCATAAAACGAGCATGCGGGCGCTCAGCCGACCGGAAAGGCAGAATGCGCAAGTCAGGGATCGAC
CGTCCCCTTCTGCGTGCTACCGGTCC
Found at i:23799528 original size:171 final size:170
Alignment explanation
Indices: 23799213--23799823 Score: 511
Period size: 171 Copynumber: 3.6 Consensus size: 170
23799203 AACTCCGTAT
* * * * * *
23799213 GCTTAAACTGGGGATGAACTCCGTATGCCTAAGTCAACCAACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * * * * * * * * * * *
23799278 CCAACCGGAGAGGCATAATGCGAAAGTCGGGGATCAGCCTGGTCCCTCTCTGTGTGCTGCCGATC
66 TCGA-CGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTCCCTCTATGATACCGATC
* * *
23799343 CCGCTGTCGGTCCTGCTGCCATAACCCTCGGTCC-AACTGGG
130 CCGCTCTCGGTCCTGCTGCCATAACCCTCGATCCGAACT-GA
* * * *
23799384 GCTTAGACAT-GGAATGACCTCCGTATACCTAAGCCAACCCACGAAACGAACGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCA
*
23799448 GTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTCCCTCTATGATACCGAT
65 GTC-GACGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTCCCTCTATGATACCGAT
* * **
23799513 CCTGCTACT-GGTCCTGCTGCCGTAACCCTCGATCCGGTCTGA
129 CCCGCT-CTCGGTCCTGCTGCCATAACCCTCGATCCGAACTGA
* * * *
23799555 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGTGTGCAGGAGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
*
23799620 TCGACTGGAGAGGTAGAATGCGCAAGCCGGGGATC-GACCCGAT-CC-CCC-C-----TA-CG-T
66 TCGAC-GGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGATCCCTCCCTCTATGATACCGAT
* * * * ** *
23799674 ---GCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCTAA
129 CCCGCTCTCGGTCCTGCTGCCATAACCCTCGATCCGAACTGA
* * * ** * * *
23799713 TCTTAGACTGGGAATGAGCTCCGTATGCCTAAGTCAACCCACGAAACTTGCGCGTGGGAGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* *** * *
23799778 CCAGTTTGAGAGGCATAATGTGCAAGCCGGGGATC-GACCCGATCCC
66 TC-GACGGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGATCCC
23799824 CCTCTACGTG
Statistics
Matches: 368, Mismatches: 62, Indels: 32
0.80 0.13 0.07
Matches are distributed among these distances:
157 1 0.00
158 120 0.33
159 3 0.01
161 1 0.00
162 2 0.01
163 2 0.01
168 1 0.00
169 3 0.01
170 6 0.02
171 225 0.61
172 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (170 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
TCGACGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTCCCTCTATGATACCGATCC
CGCTCTCGGTCCTGCTGCCATAACCCTCGATCCGAACTGA
Found at i:23799812 original size:158 final size:158
Alignment explanation
Indices: 23799524--23800016 Score: 462
Period size: 158 Copynumber: 3.1 Consensus size: 158
23799514 CTGCTACTGG
** *
23799524 TCCTGCTGCCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
23799589 CAACCCAAGAAACGAGTGTGCAGGAGCTCAGTCGACTGGAGAGGTAGAATGCGCAAGCCGGGGAT
66 CAACCCAAGAAACGAGCGTG-AGGAGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGGGGAT
23799654 CGACCCGATCCCCC-CTACGTGCTGTCGA
130 CGACCCGATCCCCCTCTACGTGCTGTCGA
* * *
23799682 TCCTGCTGCCACAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGT
1 TCCTGCTGCCACAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * * *
23799747 CAACCCACGAAACTTGCGCGTG-GGAGCTGAGCC-AGTTTGAGAGGCATAATGTGCAAGCCGGGG
66 CAACCCAAGAAAC--GAGCGTGAGGAGCTCAGCCGA-CTGGAGAGGCAGAATGCGCAAGCCGGGG
* *
23799810 ATCGACCCGATCCCCCTCTACGTGCTATCGG
128 ATCGACCCGATCCCCCTCTACGTGCTGTCGA
* * * *** *
23799841 T-CT-CATTACCAGAGCCCTCGATCCGGT-TGGGGCTTAGACAT-GGAATGAACTCCCTATGCCT
1 TCCTGC--TGCCACAACCCTCGATCCGGTCT-AATCTTAGAC-TGGGAATGAACTCCGTATGCCT
* * * * * *** * * * *
23799902 AAGCCAACCCATGAAATGAGCGTACAGGCGCTTAGCCGACCAAAAAGGCAGAATACGCAAGTCAG
62 AAGCCAACCCAAGAAACGAGCGT-GAGGAGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGG
* * * *
23799967 GGATCGGCCCGGT-CCCCTCTGCGTGCTGCCGA
126 GGATCGACCCGATCCCCCTCTACGTGCTGTCGA
* *
23799999 TACTGCTACCACAACCCT
1 TCCTGCTGCCACAACCCT
23800017 TGGTCTAGTC
Statistics
Matches: 270, Mismatches: 52, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
157 7 0.03
158 148 0.55
159 107 0.40
160 8 0.03
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (158 bp):
TCCTGCTGCCACAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCCAAGAAACGAGCGTGAGGAGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATC
GACCCGATCCCCCTCTACGTGCTGTCGA
Found at i:23799880 original size:843 final size:827
Alignment explanation
Indices: 23798199--23800135 Score: 2003
Period size: 843 Copynumber: 2.3 Consensus size: 827
23798189 TAGACTGGGG
** * * * * *
23798199 ATGAACTCTGTATGCCTAAGTCAACCCATGAAACGGGCTTGCAGGTGCTCAACCGATCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAGGCGCTCAACCGACCGGAAAGG
* * * * *
23798264 CAGAATGCGTAAGTCGGGGATCGACCCT-GTCCCCCCTGCGTGCTACCGATCCTGCTGCTGTAAC
66 CAGAATGCGTAAGTCGAGGATCGA-CCTGGT-CCCCCTGCGTGCTGCCGATCCTGCTACCGCAAC
* * * ** * * * *
23798328 CTTCAGTCCAATTTGATCTTAGACTGGGAATGAACTCTGTATACTTAGACTTGGGATGAACTCTG
129 CCTCAGTCTAGTCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCG
* *
23798393 TATGCCTAAGTCAACCCACAAAATAAGCGTGCGGGCACTCAGTCGGTCGGATAGGCCGACCGGAG
193 TATGCCTAAGTCAACCCACGAAATGAGCGTGCGGG----C-G-C--TC----A-GCCGACCGGAG
*
23798458 AGGCATAATGCATAAGTCAGGGATCAGCCTGGCCTCCCTCTGCATACTGCCGATCCCACTGCCAT
245 AGGCATAATGCATAAGTCAGGGATCAGCCTGGCCTCCCTCTGCATACTGCCGATCCCACTGCCAG
* *
23798523 TCCTACTGCCACAACCCTCAGTCCGACGGGGCTTAGACATGGAATGACCTCCGTATGCCTAAGCC
310 TCCTACTGCCACAACCCTCAGTCCAACGGGGCTTAGACATGGAATGACCTCCGTATACCTAAGCC
* * * * * * *
23798588 AACCCATGAAATGAGCGTGCAGGCATTCAGCCGATCGGAGAGGTAGAATGTGCAAGTCGGGGATC
375 AACCCACGAAACGAACGTGCAGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATC
* * * *
23798653 GACCTGATCCGCCTCTACGTGCTGCCGGTCCCGCTACCACAACCCTCGGTCCAGCTGTGGCTTAG
440 GACCCGATCCCCCTCTACGTCCTGCCGGTCCCGCTACCACAACCCTCGATCCAGCTGT-GCTTAG
* * * * *
23798718 ACATGGAATGATCTCCCTATGCCTAAGCCAACCCATAAAACGGGCATGCGGGTGCTCAGTCGGCC
504 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAGCATGCAGGAGCTCAGTCGACC
* * * *
23798783 GGAGAGGCAGAATGCACAAGCTAGGGATCGGCCCCGTCCCCTCCTGCGTGCTATCAATCTTGCTG
569 GGAGAGGCAGAATGCACAAGCCAGGGATCGGACCCGTCCCCTCCTACGTGCTATCAATCCTGCTG
** * *
23798848 CCGTAACCCTCAGACTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCAC
634 CCACAACCCTCAGACCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCAC
* ** * * *
23798913 AAAATGAGCATGCCGACGCTGATCTGGTCAAAGAGGCATAGTGCGCAAGTCAGGGATCGACTCGT
699 AAAATGAGCATGCCGACGCTGAGCCAGTCAAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGT
* * * * *
23798978 CCCCTTCTGCATGCTACCGGTACCACTGCCACAACCCTCGGTCCGACTGGGGTTTAGACATGGA
764 CCCCCTCTACATGCTACCGGTACCACTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGA
* *
23799042 ATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCATGCGGGCGCTCAACCGACCGGAAAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAGGCGCTCAACCGACCGGAAAGG
* * * * * *
23799107 CAGAATGCATAAGCCGAGGATCGATCTGGTCCCTCCTACGTGCTGCCGATCCTGTTATCGCAACC
66 CAGAATGCGTAAGTCGAGGATCGACCTGGTCCC-CCTGCGTGCTGCCGATCCTGCTACCGCAACC
* * * * *
23799172 CTCATTTTGGTCCGATCATAGACTGGAAATGAACTCCGTATGCTTAAACTGGGGATGAACTCCGT
130 CTCAGTCTAGTCCGATCTTAGACTGG-AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGT
* *
23799237 ATGCCTAAGTCAACCAACGAAATGAGCGTGCGGGCGCTCAGCCAACCGGAGAGGCATAATGCGA-
194 ATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCATAATGC-AT
* * ** * * * * * *
23799301 AAGTCGGGGATCAGCCTGGTCC-CTCTCTGTGTGCTGCCGATCCCGCTGTCGGTCCTGCTGCCAT
258 AAGTCAGGGATCAGCCTGG-CCTCCCTCTGCATACTGCCGATCCCACTGCCAGTCCTACTGCCAC
*
23799365 AACCCTCGGTCCAACTGGGGCTTAGACATGGAATGACCTCCGTATACCTAAGCCAACCCACGAAA
322 AACCCTCAGTCCAAC-GGGGCTTAGACATGGAATGACCTCCGTATACCTAAGCCAACCCACGAAA
* ** * *
23799430 CGAACGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC-AGCCCGATCC
386 CGAACGTGCAGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGAT-C
* * ** *
23799494 CTCCCTCTATGATACCGATCCTGCTACTGGTCCTGCTGCCGTAACCCTCGATCCGGTCTGAT-CT
449 C-CCCTC-----TA-CG-TCCTGC--C-GGTCCCGCTACCACAACCCTCGATCCAG-CTG-TGCT
* **
23799558 TAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCA-AGAAACGAGTGTGCAGGAGCTCAGT
501 TAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATA-AAACGAGCATGCAGGAGCTCAGT
* * * * * *
23799621 CGACTGGAGAGGTAGAATGCGCAAGCCGGGGATC-GACCCGATCCCC-CCTACGTGCTGTCGATC
564 CGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGGACCCG-TCCCCTCCTACGTGCTATCAATC
* * * * * *
23799684 CTGCTGCCACAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGTCA
628 CTGCTGCCACAACCCTCAGACCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCATAAGTCA
* * * * *** * *
23799749 ACCCACGAAACTTGCGCGTG-GGA-GCTGAGCCAGTTTGAGAGGCATAATGTGCAAGCCGGGGAT
693 ACCCAC-AAA-ATGAGCATGCCGACGCTGAGCCAGTCAAAGAGGCATAATGCGCAAGCCAGGGAT
* * * * * **
23799812 CGACCCGATCCCCCTCTACGTGCTATCGGT-CTCATTACCAGAGCCCTCGATCCGGTTGGGGCTT
756 CGACCCG-TCCCCCTCTACATGCTACCGGTAC-CACTACCACAACCCTCGATCCGACTGGGGCTT
23799876 AGACATGGA
819 AGACATGGA
* * * * * * **
23799885 ATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTACAGGCGCTTAGCCGACCAAAAAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAGGCGCTCAACCGACCGGAAAGG
* * * * * *
23799950 CAGAATACGCAAGTC-AGGGATCGGCCCGGTCCCCTCTGCGTGCTGCCGATACTGCTACCACAAC
66 CAGAATGCGTAAGTCGA-GGATCGACCTGGTCCCC-CTGCGTGCTGCCGATCCTGCTACCGCAAC
** * *
23800014 CCTTGGTCTAGTCCGATCTTAGACTTGGAATGAA-TGCCTTATGCTTAGACTGAGGATGAACTCC
129 CCTCAGTCTAGTCCGATCTTAGAC-TGGAATGAACT-CCGTATGCTTAGACTGGGGATGAACTCC
* * *
23800078 GTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCACTCAGCCGACCAGAGAGGCA
192 GTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCA
23800136 GGATGCGCAA
Statistics
Matches: 898, Mismatches: 164, Indels: 64
0.80 0.15 0.06
Matches are distributed among these distances:
830 85 0.09
831 99 0.11
832 2 0.00
833 4 0.00
835 2 0.00
837 1 0.00
838 3 0.00
839 3 0.00
840 5 0.01
842 129 0.14
843 552 0.61
844 12 0.01
845 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (827 bp):
ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAGGCGCTCAACCGACCGGAAAGG
CAGAATGCGTAAGTCGAGGATCGACCTGGTCCCCCTGCGTGCTGCCGATCCTGCTACCGCAACCC
TCAGTCTAGTCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTAT
GCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCATAATGCATAAG
TCAGGGATCAGCCTGGCCTCCCTCTGCATACTGCCGATCCCACTGCCAGTCCTACTGCCACAACC
CTCAGTCCAACGGGGCTTAGACATGGAATGACCTCCGTATACCTAAGCCAACCCACGAAACGAAC
GTGCAGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCT
ACGTCCTGCCGGTCCCGCTACCACAACCCTCGATCCAGCTGTGCTTAGACATGGAATGAACTCCC
TATGCCTAAGCCAACCCATAAAACGAGCATGCAGGAGCTCAGTCGACCGGAGAGGCAGAATGCAC
AAGCCAGGGATCGGACCCGTCCCCTCCTACGTGCTATCAATCCTGCTGCCACAACCCTCAGACCG
GTCCAATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCACAAAATGAGCATGCCGAC
GCTGAGCCAGTCAAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGTCCCCCTCTACATGCTAC
CGGTACCACTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGA
Found at i:23801719 original size:26 final size:26
Alignment explanation
Indices: 23801681--23801733 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23801671 GGCTCAAAAT
23801681 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23801707 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23801733 C
1 C
23801734 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23801909 original size:25 final size:26
Alignment explanation
Indices: 23801866--23801915 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
23801856 CGGTCCGATC
23801866 TTAGACTGAGAATGAACTCCATATGG
1 TTAGACTGAGAATGAACTCCATATGG
* *
23801892 TTAGACTG-GGATGAACTCCGTATG
1 TTAGACTGAGAATGAACTCCATATG
23801916 CGTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCATATGG
Found at i:23802584 original size:26 final size:26
Alignment explanation
Indices: 23802548--23802600 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23802538 CCAGTTTGAT
*
23802548 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23802574 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23802600 C
1 C
23802601 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23803005 original size:158 final size:157
Alignment explanation
Indices: 23802737--23803098 Score: 408
Period size: 158 Copynumber: 2.3 Consensus size: 157
23802727 CTTGCTATCG
* *
23802737 CAACCCTCGATC-CTGTCCAATCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGA
1 CAACCCTCGGTCTC-GTCCGATCTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCATGA
* * * **
23802801 AATGAGCGTACGGGCGCTCAACTGATCGAAAAGGCAGAATGCGTAAGTTGGGGA-CTGGCTCGGT
64 AACGAGCGTACGGGCGCTCAACGGATAGAAAAGGCAGAATGCGTAAGTCAGGGATC-GGCTCGGT
* * * * *
23802865 CCCCCCTGCGTGCTATTGATCTTGTTGCCA
128 CCCCCCTACGTACTATCGATCCTGCTGCCA
* *
23802895 CAACCGTCGGTC-CGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGA
1 CAACCCTCGGTCTCG-TCCGATCTTAGACT-GGAATGAACTCCATATGCCTAAGCCAACCCATGA
* * * * * *
23802959 AACGAGCGTTCGGGCGCTGAACCGGCTAG-AGAGGCATAATGCGTAAGTCAGGGATCGGTTCGGT
64 AACGAGCGTACGGGCGCTCAA-CGGATAGAAAAGGCAGAATGCGTAAGTCAGGGATCGGCTCGGT
* *
23803023 CCCCCCTACGTACTATCGATCCTGCTGTCG
128 CCCCCCTACGTACTATCGATCCTGCTGCCA
* * *
23803053 CAACCCTCGGTCTTGTCTGATCTTAGTCTAGGAATGAACTCCATAT
1 CAACCCTCGGTCTCGTCCGATCTTAGACT-GGAATGAACTCCATAT
23803099 ACTTAGACTG
Statistics
Matches: 172, Mismatches: 27, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
157 2 0.01
158 164 0.95
159 6 0.03
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (157 bp):
CAACCCTCGGTCTCGTCCGATCTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAA
CGAGCGTACGGGCGCTCAACGGATAGAAAAGGCAGAATGCGTAAGTCAGGGATCGGCTCGGTCCC
CCCTACGTACTATCGATCCTGCTGCCA
Found at i:23803027 original size:684 final size:684
Alignment explanation
Indices: 23801706--23803014 Score: 1450
Period size: 684 Copynumber: 1.9 Consensus size: 684
23801696 AACTCCGTAT
* * *
23801706 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCGCTTAG
1 GCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCACTTAG
* ** * * *
23801771 CCGATCGAAGAGACAGATTGCGTAAGCTGGGGATCGGCCCGATCCCCTATATGTGCTGTCGATCC
66 CCGATCGAAGAGACAGAATGCACAAGCTGAGGATCGGCCCGATCCCCTATACGTGCTGCCGATCC
* * * * *
23801836 TGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCATATGGTTAGACTGG
131 TACTGCCACAACCCTTAGTCCAGTCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGG
* * *
23801901 GATGAACTCCGTATGCGTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAACCGACCGAAGAG
196 GATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAACCGACCGAAGAG
* * * * * * * ** *
23801966 GCTGGCTGAAGTGGCATAATGCACAAGCCGAGGATCAACCTGGTCCCTCTCGATGTGCTGTCGAT
261 GCCGACTGAAGAGGCAGAATGCACAAGCCGAGGATCAACCTGATCCCCCTCGACGTGCTCCCAAT
* * * * *** *
23802031 CCCGCTGTTGGTCCTGTTGCCATAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCG
326 CCCGCTATTGGTCCTGCTACCACAACCCTCGATCCGACTCAAGCTTAGACATGGAATGAACTCCA
* * * **
23802096 TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAGTCGACCAGGAGGCAGAATGCACA
391 TATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTAACTCGACCAAAAGGCAGAATGCACA
* * * * * * *
23802161 TGTCGGGGACCAGCTCGATCGCCTCCTATGTGCTGTCAATCCTACTATCGCAACCCTTGATCCGA
456 AGTCGGGGACCAGCTCGATCGCCCCCTACGTGCTATCAATCCTACTACCACAACCCTCGATCCGA
* **
23802226 TCAGAACTTAGATTGGAAATGAACTCTGTATGCCAAAGTCAACCCAAGAAACGAGCGTTCGGGCA
521 TCAGAACTTAGACTGGAAATGAACTCCATATGCCAAAGTCAACCCAAGAAACGAGCGTTCGGGCA
* * * * *
23802291 TTGAGCCAGTCGAAAAGGCAAAATGTGCAAGTCGGGGATCAGCCTAGTCCCCCTCTGTGTGCTAC
586 CTGAACCAGTAGAAAAGGCAAAATGCGCAAGTCAGGGATCAGCCTAGTCCCCCTCTGTGTGCTAC
23802356 CGGTCTCGCTGCCACAACCCTCGGTCCGGTTGGG
651 CGGTCTCGCTGCCACAACCCTCGGTCCGGTTGGG
23802390 GCTTAGACATGGAATGAACACCCTATGCCTAA-CCAACCCACAAAAC-AGGCGTGCGAGCACTCT
1 GCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACAAAACGA-GCGTGCGAGCACT-T
* * * * * *
23802453 A-CCGGTCGGAGAGGCAGAATGCACAAG-TCGAGGATCGGTCTGATCCCCCT-TGCGTGCTGCCG
64 AGCCGATCGAAGAGACAGAATGCACAAGCT-GAGGATCGGCCCGAT-CCCCTATACGTGCTGCCG
** * **
23802515 ATCCTACTGCCACAACCCTTAGTCCAGTTTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
127 ATCCTACTGCCACAACCCTTAGTCCAGTCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGA
* * *
23802580 CTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCTGATCG
192 CT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAACCGACCG
* * *** * * * *
23802645 GAGAGGCCGACTGGAGAGGCAGAATGTGTAAGCCGAGGATCGATCTGATCCCCCCTTG-CGTGGT
256 AAGAGGCCGACTGAAGAGGCAGAATGCACAAGCCGAGGATCAACCTGAT-CCCCCTCGACGTGCT
** * * * * *
23802709 CCCAATCTTGCTATTGGTCTTGCTATCGCAACCCTCGATCCTGTC-CAATCTTAGACATGGAATG
320 CCCAATCCCGCTATTGGTCCTGCTACCACAACCCTCGATCC-GACTCAAGCTTAGACATGGAATG
* *
23802773 AACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAACT-GATCGAAAAGGCA
384 AACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCT-AACTCGA-CCAAAAGGCA
** * ** * * ** * ** * *
23802837 GAATGCGTAAGTTGGGGACTGGCTCGGTC-CCCCCTGCGTGCTATTGATCTTGTTGCCACAACCG
447 GAATGCACAAGTCGGGGACCAGCTCGATCGCCCCCTACGTGCTATCAATCCTACTACCACAACCC
* * * * * *
23802901 TCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGC
512 TCGATCCGATCAGAACTTAGACTGGAAATGAACTCCATATGCCAAAGTCAACCCAAGAAACGAGC
* * * * *
23802966 GTTCGGGCGCTGAACCGGCTAG-AGAGGCATAATGCGTAAGTCAGGGATC
577 GTTCGGGCACTGAACCAG-TAGAAAAGGCAAAATGCGCAAGTCAGGGATC
23803015 GGTTCGGTCC
Statistics
Matches: 503, Mismatches: 112, Indels: 20
0.79 0.18 0.03
Matches are distributed among these distances:
682 2 0.00
683 124 0.25
684 336 0.67
685 41 0.08
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (684 bp):
GCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCACTTAG
CCGATCGAAGAGACAGAATGCACAAGCTGAGGATCGGCCCGATCCCCTATACGTGCTGCCGATCC
TACTGCCACAACCCTTAGTCCAGTCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGG
GATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAACCGACCGAAGAG
GCCGACTGAAGAGGCAGAATGCACAAGCCGAGGATCAACCTGATCCCCCTCGACGTGCTCCCAAT
CCCGCTATTGGTCCTGCTACCACAACCCTCGATCCGACTCAAGCTTAGACATGGAATGAACTCCA
TATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTAACTCGACCAAAAGGCAGAATGCACA
AGTCGGGGACCAGCTCGATCGCCCCCTACGTGCTATCAATCCTACTACCACAACCCTCGATCCGA
TCAGAACTTAGACTGGAAATGAACTCCATATGCCAAAGTCAACCCAAGAAACGAGCGTTCGGGCA
CTGAACCAGTAGAAAAGGCAAAATGCGCAAGTCAGGGATCAGCCTAGTCCCCCTCTGTGTGCTAC
CGGTCTCGCTGCCACAACCCTCGGTCCGGTTGGG
Found at i:23803636 original size:527 final size:523
Alignment explanation
Indices: 23802340--23803680 Score: 1313
Period size: 526 Copynumber: 2.5 Consensus size: 523
23802330 CAGCCTAGTC
* * * *
23802340 CCCCTCTGTGTGCTACCGGTCTCGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAAT
1 CCCCTCTGCGTGCTAACGGTCTCGTTGCCACAACCCTCGGTCCGGATGGGGCTTAGACATGGAAT
* * * * *
23802405 GAACACCCTATGCCTAA-CCAACCCACAAAACAGGCGTGC-GAGCACTCTACCGGTCGGAGAGGC
66 GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGA-CGCTCAACC-GTCGGAGAGGC
* * * * * * *
23802468 AGAATGCACAAGTC-GAGGATCGGTCTGATCCCCCTTGCGTGCTGCCGATCCTACTGCCACAACC
129 AGAATGCACAAGTCGGA-GATCGGTCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACC
** * * * **
23802532 CTTAGTCCAGTTTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGT
193 CTCGGT-CTG-TCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGT
* * * * **
23802597 ATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCTGATCGGAGAGGCCGACTGGAGA
256 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCTGACCGAAGAGGCAGACCAGAGA
* * * * * ** ***
23802662 GGCAGAATGTGTAAGCCGAGGATCGATCTGATCCCCCCTTGCGTGGTCCCAATCTTGCTATTGGT
321 GGAAGAATGCGTAAGCCGAGGATCGACCTGATCCCCCCTTGCGTGCTACCAATCCCGCTACCAGT
* * * * *
23802727 CTTGCTATCGCAACCCTCGATCCTGTCCAATCTTAGACATGGAATGAACTCCATATGCCTAAGCC
386 CCTGCTACCACAACCCTCGATCCTGACCAAGCTTAGACATGGAATGAACTCCATATGCCTAAGCC
* * * * ** **
23802792 AACCCATGAAATGAGCGTACGGGCGCTCAACTGATCGAAAAGGCAGAATGCGTAAGTTGGGGACT
451 AACCCACGAAACGAGCGTACGGGCGCTCAACCGACCGAAAAGGCAGAATGCACAAGTCAGGGACT
* *
23802857 GGCTCGGT
516 GGCCCGAT
* ** * * * * **
23802865 CCCCCCTGCGTGCTATTGATCTTGTTGCCACAACCGTCGGTCC-GATCCGATCTTAGAC-TGGGA
1 CCCCTCTGCGTGCTAACGGTCTCGTTGCCACAACCCTCGGTCCGGAT-GGGGCTTAGACAT-GGA
* * * * * * * * *
23802928 ATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTGAACCGGCTAGAGAGG
64 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGACGCTCAACCGTC-GGAGAGG
* ** * * * *
23802993 CATAATGCGTAAGTCAGG-GATCGGTTCGGTCCCCCCTACGTACTATCGATCCTGCTGTCGCAAC
128 CAGAATGCACAAGTC-GGAGATCGGTCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAAC
* *
23803057 CCTCGGTCTTGTCTGATCTTAGTCTAGGAATGAACTCCATATACTTAGACTGGGGATGAACTCCG
192 CCTCGGTC-TGTC-GATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCG
** * *
23803122 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCTTTCAG-TCGACCGAATAGGCAGGCCAGA
255 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCT-GACCGAAGAGGCAGACCAGA
* * ** * * *
23803186 GAGGAATAATGCGTAAGCC-AGGGATC-AGCCTGGT-CTTCCTCTGCGTGCTATCGATCCCGCTG
319 GAGGAAGAATGCGTAAGCCGA-GGATCGA-CCTGATCCCCCCT-TGCGTGCTACCAATCCCGCTA
* *** * * *
23803248 CCAGTCCTGCTGCCACAACCCTCGATCC-GACTGGGGCTTAGACATGGAATGACCTTCGTATGCC
381 CCAGTCCTGCTACCACAACCCTCGATCCTGAC-CAAGCTTAGACATGGAATGAACTCCATATGCC
* * * *
23803312 TAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCC-AGAGAGGCAGAATGCACAAGTC
445 TAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACCGA-AAAGGCAGAATGCACAAGTC
*
23803376 ATGGA-TAGGCCCGAT
509 AGGGACT-GGCCCGAT
* * *
23803391 CCCACTCTGCGTGCTAACGGTCCCGTTGCCACAACCCTCTGTCCGGCTGGGGCTTAGACATGGAA
1 CCC-CTCTGCGTGCTAACGGTCTCGTTGCCACAACCCTCGGTCCGGATGGGGCTTAGACATGGAA
* * *
23803456 TGATCTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGACGCTCAATCGATCGGAGAGGC
65 TGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGACGCTCAACCG-TCGGAGAGGC
* ** * *
23803521 AGAATGCACAAGTCGGATATCGACCCGGTCCCCCCTACGTGCTGTTGATCCTGCTACCGCAACCC
129 AGAATGCACAAGTCGGAGATCGGTCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCC
* *
23803586 TCGGTCTGATCCATTCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTCGTA
194 TCGGTCTG-TCGA-TCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTA
* * *
23803651 TGCCTAAGTCAACCTATGAAACGAGTGTGC
257 TGCCTAAGTCAACCCACGAAACGAGCGTGC
23803681 AGGTGCTTAG
Statistics
Matches: 647, Mismatches: 146, Indels: 44
0.77 0.17 0.05
Matches are distributed among these distances:
524 3 0.00
525 78 0.12
526 332 0.51
527 229 0.35
528 5 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.22
Consensus pattern (523 bp):
CCCCTCTGCGTGCTAACGGTCTCGTTGCCACAACCCTCGGTCCGGATGGGGCTTAGACATGGAAT
GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGACGCTCAACCGTCGGAGAGGCAG
AATGCACAAGTCGGAGATCGGTCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTC
GGTCTGTCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCC
TAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCTGACCGAAGAGGCAGACCAGAGAGGAAG
AATGCGTAAGCCGAGGATCGACCTGATCCCCCCTTGCGTGCTACCAATCCCGCTACCAGTCCTGC
TACCACAACCCTCGATCCTGACCAAGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCC
ACGAAACGAGCGTACGGGCGCTCAACCGACCGAAAAGGCAGAATGCACAAGTCAGGGACTGGCCC
GAT
Found at i:23804001 original size:26 final size:26
Alignment explanation
Indices: 23803951--23804002 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23803941 TCGATTCGAT
**
23803951 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23803977 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23804003 GCTAAGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23804392 original size:159 final size:158
Alignment explanation
Indices: 23804145--23804439 Score: 342
Period size: 159 Copynumber: 1.9 Consensus size: 158
23804135 TCTTAGATTG
* * * * * * * * *
23804145 GGAATGAACTCCGTATGCCTATGTCATCCCACGAAATGAGCGTGCAGGCACTGAGCCAGTCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACACTCAGCCAGCCAGAG
* * * * *
23804210 AGGCATAATGCGTAAGCTGGGGATC-GACCCAGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCA
66 AGGCAGAATGAGCAAGCTAGGGATCAG-CCCAGTCCCCC-CTGCGTGCTGCCGATCCCGCTGCCA
23804274 CAACCCTCTATCCGGCTGGGGCTTAGACAT
129 CAACCCTCTATCCGGCTGGGGCTTAGACAT
* **
23804304 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGACACTCAGCTGGCCAGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACACTCAGCCAGCCAGAG
* * * * * *
23804369 AGGCAGAATGAGCAAG-TCAGGGATCAGCTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGC
66 AGGCAGAATGAGCAAGCT-AGGGATCAGCCCAGTCCCCCCTGCGTGCTGCCGATCCCGCTGCCAC
23804433 AACCCTC
130 AACCCTC
23804440 GGTCCGGTCT
Statistics
Matches: 111, Mismatches: 23, Indels: 5
0.80 0.17 0.04
Matches are distributed among these distances:
158 29 0.26
159 81 0.73
160 1 0.01
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (158 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACACTCAGCCAGCCAGAG
AGGCAGAATGAGCAAGCTAGGGATCAGCCCAGTCCCCCCTGCGTGCTGCCGATCCCGCTGCCACA
ACCCTCTATCCGGCTGGGGCTTAGACAT
Found at i:23804686 original size:270 final size:270
Alignment explanation
Indices: 23804205--23804738 Score: 752
Period size: 270 Copynumber: 2.0 Consensus size: 270
23804195 CTGAGCCAGT
* *
23804205 CGGAGAGGCATAATGCGTAAGCTGGGGATCGACCCAGTCCCCCTCTGCGTGCTGCCGGTCCCGCT
1 CGGAGAGGCATAATGCGTAAGCTGGGGATCGACCCAGTCCCCCTCTACGTGCTGCCGATCCCGCT
* * *
23804270 GCCACAACCCTCTATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
66 GCCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * *
23804335 CGAAACGGGCGTGCAGACACTCAGCTGGCCAGAGAGGCAGAATGAGCAAGTCAGGGATCAGCTCG
131 CGAAACGGGCGTGCAGACACTCAGCCGACCAGAGAGGCAGAATGAGCAAGTCAAGGATCAGCTCG
* ** * *
23804400 GTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGA
196 GTCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGAACCAGTCCGATCTTAGACTGGGA
23804465 ATGACTCGGC
261 ATGACTCGGC
* * * * *
23804475 CGGAGAGGCATAATGCGTAAG-TCGGGGTTTGGCCC-GATCCCCTTCTACGTGCTGTCGATCCCG
1 CGGAGAGGCATAATGCGTAAGCT-GGGGATCGACCCAG-TCCCCCTCTACGTGCTGCCGATCCCG
* *
23804538 CTGCCACAACCCTCGGTTCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
64 CTGCCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * *
23804603 CACGAAACGGGTGTGCGGGCGCTCAGCCGACC-GAAGAGGCAGAATGCGTAAGTCAAGGATCAGC
129 CACGAAACGGGCGTGCAGACACTCAGCCGACCAG-AGAGGCAGAATGAGCAAGTCAAGGATCAGC
* *
23804667 -CTGGTCCCTCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGAACTAGTCCGATCTTAGACT
193 TC-GGTCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGAACCAGTCCGATCTTAGACT
23804731 GGGAATGA
257 GGGAATGA
23804739 ACTCCGTATG
Statistics
Matches: 232, Mismatches: 28, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
269 4 0.02
270 228 0.98
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.19
Consensus pattern (270 bp):
CGGAGAGGCATAATGCGTAAGCTGGGGATCGACCCAGTCCCCCTCTACGTGCTGCCGATCCCGCT
GCCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
CGAAACGGGCGTGCAGACACTCAGCCGACCAGAGAGGCAGAATGAGCAAGTCAAGGATCAGCTCG
GTCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGAACCAGTCCGATCTTAGACTGGGA
ATGACTCGGC
Found at i:23804753 original size:26 final size:26
Alignment explanation
Indices: 23804723--23804773 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23804713 CTAGTCCGAT
23804723 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
23804749 CTTAGACTAGGGATGAACTCCGTAT
1 CTTAGACTAGGGATGAACTCCGTAT
23804774 TCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:23807012 original size:26 final size:26
Alignment explanation
Indices: 23806976--23807027 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
23806966 CCCGTCCGAT
* *
23806976 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
* *
23807002 CTTAGACTGGGGATGAAGTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
23807028 TCGAAGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:23807386 original size:26 final size:26
Alignment explanation
Indices: 23807357--23807407 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23807347 CGGTCTGATC
*
23807357 TTAGAC-TGGGAATGAACTCTGTATGA
1 TTAGACAT-GGAATGAACTCCGTATGA
23807383 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
23807408 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGA
Found at i:23807506 original size:380 final size:368
Alignment explanation
Indices: 23806963--23807826 Score: 899
Period size: 368 Copynumber: 2.3 Consensus size: 368
23806953 CGTAACCATC
* * * * * *
23806963 GGTCCCGTCCGATCTTAGATTGGGAATGAACT-TCGTATGCTTAGAC-TGGGGATGAAGTTCATA
1 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACAT-GGAATGAACTCCGTA
* * * * * * * * * ** *
23807026 TGTCGAAGTCAACCCACGAAACGAACATGCGGCCGTTCAGCTGACCAAAGAGGTCAGTCGGAGAG
64 TGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCATTCAGCCGACCAAAGAGGTCAGCCAAAAAG
* * *
23807091 GCAAAATGCGCAAGCCGGGGATTAGCCTAGTCCCCCTCTGCGTGCTATCAATCTCGTTGTCGATC
129 GCAAAATGCGCAAGCCAGCGATTAGCCCAGTCCCCCTCTGCGTGC--T--A---C-----CGATC
** * * *
23807156 CTGCTACCACAACCTTCGGTCCGGCTGGGTCTTAGACATGGGATGAACTCTGTATGCCTAAGCCA
182 CTGCTACCACAACCTTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
23807221 ACCCATGAAACAAGTGTGCAGGCACTCAGTCGGCCGGATAGGCAGAATGTGTAAGCC-AGGGATT
247 ACCCATGAAACAAGTGTGCAGGCACTCAGTCGGCCCGAGAGACAGAATGCGCAAGCCGA-GGATC
* ** *** * ** *
23807285 G-GCTTGATCCCCCCTGTGTGTTATCGATCCTGTTGCTGGTCTTGCTGCTGTAACCCCA
311 GACCCAG-TCCCCCCTACATGTTACCGATCCTACTGCTGGTCTTGCTGCTGCAACCCCA
* *
23807343 GGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGATTAGACATGGAATGAACTCCGTATG
1 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATG
* * ** *
23807408 CCTAAGTCAACCAACGAAATGAGCGTGCGGGCATTCAGCCGGTCAGAGAGGTCAGCCAAAAAGGC
66 CCTAAGTCAACCCACGAAAAGAGCGTGCGGGCATTCAGCCGACCAAAGAGGTCAGCCAAAAAGGC
* * ** *
23807473 AAAATGTGCAAGCCAGCGATTAGCCCGGTCCCCCTCTTTGTGCTACCGATCCTGCTGCCACAACC
131 AAAATGCGCAAGCCAGCGATTAGCCCAGTCCCCCTCTGCGTGCTACCGATCCTGCTACCACAACC
* *
23807538 TTTGGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG
196 TTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAG
* * *
23807603 TGTGCGGGCACTCAGTCGGCCCGAGAGATAGAATGCGCAAGCCGAGGATCGACCCAGTCCCTCCT
261 TGTGCAGGCACTCAGTCGGCCCGAGAGACAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCT
* ***
23807668 ACATGTTACCGATCCTACTGCTGGTCTTGCTGTTGCAACCTTT
326 ACATGTTACCGATCCTACTGCTGGTCTTGCTGCTGCAACCCCA
* * * * *
23807711 GATCCGATCCGATCTTAGACTGGGAATGAACACCGTATGCTTAGACATTGAATGAACTCCGTATG
1 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATG
* * * * *
23807776 CCTAAGCCAACCCACGAAAAGTGCGTGCGGGCACTCAGCCGATCGAAGAGG
66 CCTAAGTCAACCCACGAAAAGAGCGTGCGGGCATTCAGCCGACCAAAGAGG
23807827 CAGAATGCAC
Statistics
Matches: 403, Mismatches: 77, Indels: 20
0.81 0.15 0.04
Matches are distributed among these distances:
368 257 0.64
369 3 0.01
373 1 0.00
376 1 0.00
378 1 0.00
380 138 0.34
381 2 0.00
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (368 bp):
GGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATG
CCTAAGTCAACCCACGAAAAGAGCGTGCGGGCATTCAGCCGACCAAAGAGGTCAGCCAAAAAGGC
AAAATGCGCAAGCCAGCGATTAGCCCAGTCCCCCTCTGCGTGCTACCGATCCTGCTACCACAACC
TTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAG
TGTGCAGGCACTCAGTCGGCCCGAGAGACAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCT
ACATGTTACCGATCCTACTGCTGGTCTTGCTGCTGCAACCCCA
Found at i:23807560 original size:368 final size:368
Alignment explanation
Indices: 23807151--23807816 Score: 913
Period size: 368 Copynumber: 1.8 Consensus size: 368
23807141 ATCTCGTTGT
** * * *
23807151 CGATCCTGCTACCACAACCTTCGGTCCGGCTGGGTCTTAGACATGGGATGAACTCTGTATGCCTA
1 CGATCCTGCTACCACAACCTTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* * * * *
23807216 AGCCAACCCATGAAACAAGTGTGCAGGCACTCAGTCGGCCGGATAGGCAGAATGTGTAAGCC-AG
66 AGCCAACCCATGAAACAAGTGTGCAGGCACTCAGTCGGCCCGAGAGACAGAATGCGCAAGCCGA-
* * ** *** * ** *
23807280 GGATTG-GCTTGATCCCCCCTGTGTGTTATCGATCCTGTTGCTGGTCTTGCTGCTGTAACCCCAG
130 GGATCGACCCAG-TCCCCCCTACATGTTACCGATCCTACTGCTGGTCTTGCTGCTGCAACCCCAG
* * * * *
23807344 GTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGATTAGACATGGAATGAACTCCGTATGC
194 ATCCGATCCGATCTTAGACTGGGAATGAACACCGTATGATTAGACATGGAATGAACTCCGTATGC
* * *
23807409 CTAAGTCAACCAACGAAATGAGCGTGCGGGCATTCAGCCGGTCAGAGAGGTCAGCCAAAAAGGCA
259 CTAAGCCAACCAACGAAAAGAGCGTGCGGGCACTCAGCCGGTCAGAGAGGTCAGCCAAAAAGGCA
23807474 AAATGTGCAAGCCAGCGATTAGCCCGGTCCCCCTCTTTGTGCTAC
324 AAATGTGCAAGCCAGCGATTAGCCCGGTCCCCCTCTTTGTGCTAC
* *
23807519 CGATCCTGCTGCCACAACCTTTGGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
1 CGATCCTGCTACCACAACCTTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* * *
23807584 AGCCAACCCATGAAACGAGTGTGCGGGCACTCAGTCGGCCCGAGAGATAGAATGCGCAAGCCGAG
66 AGCCAACCCATGAAACAAGTGTGCAGGCACTCAGTCGGCCCGAGAGACAGAATGCGCAAGCCGAG
* * ***
23807649 GATCGACCCAGTCCCTCCTACATGTTACCGATCCTACTGCTGGTCTTGCTGTTGCAACCTTTGAT
131 GATCGACCCAGTCCCCCCTACATGTTACCGATCCTACTGCTGGTCTTGCTGCTGCAACCCCAGAT
* *
23807714 CCGATCCGATCTTAGACTGGGAATGAACACCGTATGCTTAGACATTGAATGAACTCCGTATGCCT
196 CCGATCCGATCTTAGACTGGGAATGAACACCGTATGATTAGACATGGAATGAACTCCGTATGCCT
* *
23807779 AAGCCAACCCACGAAAAGTGCGTGCGGGCACTCAGCCG
261 AAGCCAACCAACGAAAAGAGCGTGCGGGCACTCAGCCG
23807817 ATCGAAGAGG
Statistics
Matches: 253, Mismatches: 43, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
368 250 0.99
369 3 0.01
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (368 bp):
CGATCCTGCTACCACAACCTTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
AGCCAACCCATGAAACAAGTGTGCAGGCACTCAGTCGGCCCGAGAGACAGAATGCGCAAGCCGAG
GATCGACCCAGTCCCCCCTACATGTTACCGATCCTACTGCTGGTCTTGCTGCTGCAACCCCAGAT
CCGATCCGATCTTAGACTGGGAATGAACACCGTATGATTAGACATGGAATGAACTCCGTATGCCT
AAGCCAACCAACGAAAAGAGCGTGCGGGCACTCAGCCGGTCAGAGAGGTCAGCCAAAAAGGCAAA
ATGTGCAAGCCAGCGATTAGCCCGGTCCCCCTCTTTGTGCTAC
Found at i:23808026 original size:157 final size:154
Alignment explanation
Indices: 23807760--23808248 Score: 514
Period size: 157 Copynumber: 3.1 Consensus size: 154
23807750 CTTAGACATT
* * * * *
23807760 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGTGCGTGCGGGCACTCAGCCGATCGAAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGTGTGCGGGCGCTCAGTCGATCG-AGA
* * * * * *
23807825 GGCAGAATGCACAAGTCAGGGATCAGCCCAACCCCCCTGCGTGCTATCGATCCTGCTGTCGTAAC
65 GGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTGCGTGCT-TCGATCCTGCTGTCGCAAC
* *
23807890 CCTCAGTCCAGTCCGATCTGAGACTGG
129 CCTCGGTCC-GTCCGATCTTAGACTGG
* * *
23807917 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTGAGTCGATCGAGAG
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGTGTGCGGGCGCTCAGTCGATCGAGAG
* * * * * * * *
23807982 GCATAATGCGCAAGCCGGGGAT-AGCCCGATCCCCTTTTGTGTGCTGCCAGTCCCGCTGCCACAA
66 GCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCC--CTGCGTGCTTCGA-TCCTGCTGTCGCAA
* * ** *
23808046 CCCTCGGTCCGACTAGGGCTTACACAT-G
128 CCCTCGGTCCGTC-CGATCTTAGAC-TGG
* * * **
23808074 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAGTCGGCCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGTGTGCGGGCGCTCAGTCGATC-GAGA
* * * *
23808139 GGCAGAATGCGCAAGCCGGGGATCAGCTCGGTGCCCCCTGCGTGCTGTCGATCGTACTGTCGCAA
65 GGCAGAATGCGCAAGCCGGGGATCAGCCCGAT-CCCCCTGCGTGCT-TCGATCCTGCTGTCGCAA
23808204 CCCTCGGTCCGATCCGATCTTAGACTGG
128 CCCTCGGTCCG-TCCGATCTTAGACTGG
23808232 GAATGAACTCCGTATGC
1 GAATGAACTCCGTATGC
23808249 TTAGACTAGG
Statistics
Matches: 267, Mismatches: 54, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
155 10 0.04
156 26 0.10
157 140 0.52
158 78 0.29
159 9 0.03
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (154 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGTGTGCGGGCGCTCAGTCGATCGAGAG
GCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTGCGTGCTTCGATCCTGCTGTCGCAACCC
TCGGTCCGTCCGATCTTAGACTGG
Found at i:23808251 original size:26 final size:26
Alignment explanation
Indices: 23808222--23808274 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23808212 CCGATCCGAT
23808222 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
23808248 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
23808274 C
1 C
23808275 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:23808973 original size:26 final size:26
Alignment explanation
Indices: 23808935--23808987 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23808925 CGCTCAAACT
23808935 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23808961 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23808987 C
1 C
23808988 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23809208 original size:138 final size:138
Alignment explanation
Indices: 23808960--23809208 Score: 349
Period size: 138 Copynumber: 1.8 Consensus size: 138
23808950 AACTCCGTAT
23808960 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* * *
23809025 CCGATCGGAGATGCAAAATGCGCAAGCTGGGGATCGGCTCAGTCCCACTGCCATAACCCTCGGTC
66 CCGACCGGAGATGCAAAATGCGCAAGCTAGGGATCGGCCCAGTCCCACTGCCATAACCCTCGGTC
23809090 CGGCTGGG
131 CGGCTGGG
* * ** *
23809098 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* * * * *
23809163 TCGGCCGGAGGA-GTAGAATGCGCAAG-TCAGGGATCGGCCCGGTCCC
66 CCGACCGGA-GATGCAAAATGCGCAAGCT-AGGGATCGGCCCAGTCCC
23809209 CCTTACGTGC
Statistics
Matches: 96, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
137 1 0.01
138 93 0.97
139 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.31, T:0.16
Consensus pattern (138 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
CCGACCGGAGATGCAAAATGCGCAAGCTAGGGATCGGCCCAGTCCCACTGCCATAACCCTCGGTC
CGGCTGGG
Found at i:23809933 original size:343 final size:351
Alignment explanation
Indices: 23809451--23810104 Score: 790
Period size: 355 Copynumber: 1.9 Consensus size: 351
23809441 GTCTAGTCTG
* * * *
23809451 ATCTTAGAATGGGAATGAACTCCGTATGCCTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
1 ATCTTAGAATGGCAATGAACTCCGCATGCCTAGACAGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
23809516 CCACAAAATGAGCGTGCAGGCGCTCAGCCTGTCGGAGAGGTAGAATGCATAAGCTAGGGATCAGT
66 CCACAAAATGAGCGTGCAGGCGCTCAGCCTATCGGAGAGGCAGAATGCAGAAGCCAGGGATCAGT
* **
23809581 CCGGTCCCCCTCTACG-TG-C-T-TC-C-G-A-TCCTGCTGCCACAACCCTCAGTTCGGCTGGGG
131 CCGGTCCCCCTCTACGCTGTCATCCCGCTGCAGTCCTGCTGCCACAACCCTCAGTTCAACTGGGG
* * ** * *
23809638 CTTAGACATGTAATGAACTCCCTATGCCTAAGCCATCCCACAAAACGGGCGTGTGGGTGCTCAGC
196 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAAGCGTGTAGGTGCTCAAC
* *
23809703 C-GACCGAAGAGGTAGAATGTGCAAGCCGGGGATC-GACCCGATCCCCCTTGTGTGCTACCGATC
261 CAG-CCGAAGAGGTAGAATGCGCAAGCCAGGGATCTG-CCCGATCCCCCTTGTGTGCTACCGATC
23809766 CTGCTACTGCAACCCTCGATCTGGTTAA
324 CTGCTACTGCAACCCTCGATCTGGTTAA
* * * * * * *
23809794 ATCTTAGACTGGCAATGAACTCGGCATGCTTAGACTGGGGATGGACTCCGTATGCCTAAGTCAAC
1 ATCTTAGAATGGCAATGAACTCCGCATGCCTAGACAGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * *
23809859 CGACGAAATGAGTGTGCGGGTGCTCAGCCTATCGGAGAGGCATAATGCGGAAGCCGGGGATCAGT
66 CCACAAAATGAGCGTGCAGGCGCTCAGCCTATCGGAGAGGCAGAATGCAGAAGCCAGGGATCAG-
* *
23809924 TTC-GTCCCCCTCTACGTCCTGTCGATCCCGCTGCAGGTCCTGCTGCCACAACCCTCGGTTCAAC
130 TCCGGTCCCCCTCTACG--CTGTC-ATCCCGCTGCA-GTCCTGCTGCCACAACCCTCAGTTCAAC
* **
23809988 TGGTGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGTAGGTGC
191 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAAGCGTGTAGGTGC
* * *
23810053 TCAACCAGCTGAAGAGGTAGAATGCGTAAGCCAGGGATCTGCCCGGTCCCCC
256 TCAACCAGCCGAAGAGGTAGAATGCGCAAGCCAGGGATCTGCCCGATCCCCC
23810105 CCTGCGTGCT
Statistics
Matches: 254, Mismatches: 42, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
343 119 0.47
344 2 0.01
346 2 0.01
347 1 0.00
349 1 0.00
350 1 0.00
351 1 0.00
352 1 0.00
353 1 0.00
355 123 0.48
356 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (351 bp):
ATCTTAGAATGGCAATGAACTCCGCATGCCTAGACAGGGAATGAACTCCGTATGCCTAAGCCAAC
CCACAAAATGAGCGTGCAGGCGCTCAGCCTATCGGAGAGGCAGAATGCAGAAGCCAGGGATCAGT
CCGGTCCCCCTCTACGCTGTCATCCCGCTGCAGTCCTGCTGCCACAACCCTCAGTTCAACTGGGG
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAAGCGTGTAGGTGCTCAAC
CAGCCGAAGAGGTAGAATGCGCAAGCCAGGGATCTGCCCGATCCCCCTTGTGTGCTACCGATCCT
GCTACTGCAACCCTCGATCTGGTTAA
Found at i:23810202 original size:26 final size:26
Alignment explanation
Indices: 23810164--23810216 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23810154 TCGGTCTGAT
23810164 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23810190 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23810216 C
1 C
23810217 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23810598 original size:159 final size:159
Alignment explanation
Indices: 23810189--23810648 Score: 423
Period size: 159 Copynumber: 2.9 Consensus size: 159
23810179 AACTCCGTAT
* ** * *
23810189 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTACGGGTGCTCAG
* * * * * * *
23810254 TCGGTCGGAGAGGCAAAATTCGCAAGCCAGGAATCGACCCGATTCCCC-CTGCGTGCTGTTGATC
66 TCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGATCCGATCCCCCTCTGCGTGCTGTAGATC
* * ***
23810318 CTGCTACCGCAACCCTCAGTTTGATCTGA
131 CTGCTACCACAACCATCAGTCCAATCTGA
* * * * * * *
23810347 TCTTAGA-TTGGGAATGAACTCCATATGCCTAAGTCAGCCCACGAAACCAGCGTGA-GGGTGCTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGT-ACGGGTGCTC
* * * * * *
23810410 AGCCGATCGAAGAGGCATAATGCGTAAGCCGGGGATCGGGTCAG-TCCCCCTCTGCGTGCTGCTA
64 AGTCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATC-GATCCGATCCCCCTCTGCGTGCTG-TA
* *
23810474 G-TCCTGCTGCCACAACCATC-GATCCAAT-TAGG
127 GATCCTGCTACCACAACCATCAG-TCCAATCT-GA
* *
23810506 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTACGGGTGCTCAG
** * * * * *
23810571 TCGCCCGGAGAGGCAGAATGAGCAAGCCGAGGATCGATCCGATCCCCCT-TGCGTGCTATCGATC
66 TCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGATCCGATCCCCCTCTGCGTGCTGTAGATC
* *
23810635 TTGCTACCGCAACC
131 CTGCTACCACAACC
23810649 CTTGGTTCGG
Statistics
Matches: 237, Mismatches: 54, Indels: 22
0.76 0.17 0.07
Matches are distributed among these distances:
157 3 0.01
158 112 0.47
159 119 0.50
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTACGGGTGCTCAG
TCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGATCCGATCCCCCTCTGCGTGCTGTAGATC
CTGCTACCACAACCATCAGTCCAATCTGA
Found at i:23810701 original size:26 final size:26
Alignment explanation
Indices: 23810665--23810717 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23810655 TCGGTCTGAT
*
23810665 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
23810691 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
23810717 C
1 C
23810718 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23811527 original size:26 final size:26
Alignment explanation
Indices: 23811491--23811543 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23811481 CTGGTCCAAT
*
23811491 CTTAGACTGGGAATGAACTTT-GTATG
1 CTTAAACTGGGAATGAA-TTTCGTATG
*
23811517 CTTAAACTGGGGATGAATTTCGTATG
1 CTTAAACTGGGAATGAATTTCGTATG
23811543 C
1 C
23811544 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAAACTGGGAATGAATTTCGTATG
Found at i:23812262 original size:24 final size:26
Alignment explanation
Indices: 23812217--23812267 Score: 79
Period size: 24 Copynumber: 2.0 Consensus size: 26
23812207 GGCTCAAACT
23812217 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
23812243 CTTAGAC-ATGAAT-AACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
23812267 C
1 C
23812268 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 12 0.50
25 5 0.21
26 7 0.29
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:23812584 original size:25 final size:26
Alignment explanation
Indices: 23812556--23812607 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23812546 TGGGTTCGAT
23812556 CTTAGACT-GGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
23812581 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
23812607 C
1 C
23812608 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:23812790 original size:26 final size:26
Alignment explanation
Indices: 23812752--23812804 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23812742 CCAGTCCAAT
*
23812752 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23812778 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23812804 C
1 C
23812805 CTCAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23813243 original size:26 final size:26
Alignment explanation
Indices: 23813192--23813244 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23813182 CTGGTCCCAT
* * **
23813192 CTTAGACTGTGTATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCATATG
23813218 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCATATG
23813244 C
1 C
23813245 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCATATG
Found at i:23814099 original size:26 final size:26
Alignment explanation
Indices: 23814070--23814121 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23814060 TCTGATCCGA
*
23814070 TCTTAGACTGGGAATGAACTCTGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
*
23814096 TCTTAGACTGGGGATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
23814122 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:23815195 original size:26 final size:26
Alignment explanation
Indices: 23815154--23815232 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
23815144 CCGATTAGAT
*
23815154 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
23815180 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
23815206 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
23815232 C
1 C
23815233 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 48 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:23815418 original size:26 final size:26
Alignment explanation
Indices: 23815389--23815441 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23815379 CCGATCTGAT
23815389 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
23815415 CTTAGACATGGAATGGACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23815441 C
1 C
23815442 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23815931 original size:26 final size:26
Alignment explanation
Indices: 23815890--23815942 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23815880 CCAGTCTGAT
23815890 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23815916 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
23815942 C
1 C
23815943 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23816295 original size:26 final size:26
Alignment explanation
Indices: 23816257--23816308 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23816247 TCGGTCTGAT
23816257 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23816283 CTTAGACAT-GGAATGAGCTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23816309 ACTAAGCCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23817654 original size:26 final size:26
Alignment explanation
Indices: 23817616--23817668 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23817606 GGCTCAAACT
*
23817616 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23817642 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23817668 C
1 C
23817669 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23819625 original size:26 final size:26
Alignment explanation
Indices: 23819596--23819648 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23819586 GGCTCAAAAT
23819596 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
23819622 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
23819648 C
1 C
23819649 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:23820959 original size:159 final size:156
Alignment explanation
Indices: 23820490--23820981 Score: 533
Period size: 158 Copynumber: 3.1 Consensus size: 156
23820480 GCTTAAACAT
* * * * * *
23820490 GGAATGAAATCTGTATGCTTAAGCCAACCCACGAAATGAGCGTGCGAGTGCTCAGCAGGTCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC-GGTCGGAG
* ** * * * * *
23820555 AGGCAGAATGCACAAGGTGGGGACCGGCCTGGTGCCCCCTGTGTGCTGTTGATCCTGTTGCCGCA
65 AGGCAGAATGCGCAAGCAGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGCCGCA
*
23820620 ACCCTCGATCCGATCCGATCTTAGACTA
130 ACCCTCCATCCG-TCCGATCTTAGACTA
* ** * *
23820648 GGAATGAACTCTGTATGCCTAATTCAACCCACG-AACGAGCGTGCGGGTGCTGAGCCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG-CGGTCGGAG
* * * * *
23820712 AGGCATAATGCGCAAGCAGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGGTCC--CATGCCA
65 AGGCAGAATGCGCAAGCAGGGGATCGGCCCGGTCCCCC-CTGTGTGCTGTCGATCCTGC-TGCCG
* * ** *
23820775 CAACCCT-CAGTCCGACTGGGGCTTAGACATG
128 CAACCCTCCA-TCCGTC-CGATCTTAGAC-TA
* * *
23820806 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG-CGGTCGGAG
* * *
23820871 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGTGTGCTGTCGATCCTGCTACCGCA
65 AGGCAGAATGCGCAAGCAGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGCCGCA
*
23820936 ACCCTCCATCCAGTCCGATCTTAGGCTA
130 ACCCTCCATCC-GTCCGATCTTAGACTA
23820964 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
23820982 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 52, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
156 2 0.01
157 77 0.28
158 107 0.39
159 80 0.30
160 5 0.02
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCGGTCGGAGA
GGCAGAATGCGCAAGCAGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGCCGCAA
CCCTCCATCCGTCCGATCTTAGACTA
Found at i:23820984 original size:26 final size:26
Alignment explanation
Indices: 23820955--23821007 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23820945 CCAGTCCGAT
*
23820955 CTTAGGCTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
23820981 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
23821007 C
1 C
23821008 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:23822374 original size:26 final size:26
Alignment explanation
Indices: 23822334--23822389 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
23822324 CTGGTCTGAT
*
23822334 CTTAGACTGGAAATGTACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
23822360 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
23822386 CTTA
1 CTTA
23822390 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:23822818 original size:158 final size:154
Alignment explanation
Indices: 23822359--23822819 Score: 392
Period size: 158 Copynumber: 2.9 Consensus size: 154
23822349 TACTCCGTAT
* * ** * * *
23822359 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACAAGCGTACGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGC-TAA
* * * * * *
23822424 CCGGACGAAGAGGCAGAATGCGCAAG-CTAGGGACCGACCCAATCCCCCCTGTGTGCTGTCAATC
65 CCGGACG-AGAGGCAGAATGCGCAAGCCT-GGGATCGGCTC-ATCCCCCCTGCGTGCTCT-GATC
* *
23822488 TTGCTGCCGCAACCCTCAGTCCGGTCTGA
126 CTGCTGCCGCAACCCTCAGTCCAGTCTGA
* * *
23822517 TCTTAGAC-TAGGAATGAACT-CGTATGCCTAAGTCAACCCACGGAATGAGCGTGCGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTAA
* * * * * * * *
23822580 GCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGAGT-AGCTCAGTCCCACTCTGCGTGTTGCAGG
65 -CCGGAC-GAGAGGCAGAATGCGCAAGCCTGGGA-TCGGCTCA-TCCC-CCCTGCGTGCT-CTGA
* * * *
23822644 TCCCGCTGCCACAACCCTCGGTCCAG-CTAGG
124 TCCTGCTGCCGCAACCCTCAGTCCAGTCT-GA
* * * *
23822675 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCTACGAAATGGGCGTGCGGACGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCT-AA
* * *
23822740 CTGGCCAGAGAGGCAGAATGCGCAAGCCTGGGATCGGTTCGATCCCCCCTGCGTGCTACTGATCC
65 CCGGAC-GAGAGGCAGAATGCGCAAGCCTGGGATCGGCTC-ATCCCCCCTGCGTGCT-CTGATCC
*
23822805 TGCTGCCGTAACCCT
127 TGCTGCCGCAACCCT
23822820 TGATCCGATC
Statistics
Matches: 237, Mismatches: 52, Indels: 28
0.75 0.16 0.09
Matches are distributed among these distances:
156 3 0.01
157 67 0.28
158 93 0.39
159 71 0.30
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (154 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTAAC
CGGACGAGAGGCAGAATGCGCAAGCCTGGGATCGGCTCATCCCCCCTGCGTGCTCTGATCCTGCT
GCCGCAACCCTCAGTCCAGTCTGA
Found at i:23822884 original size:26 final size:26
Alignment explanation
Indices: 23822837--23822886 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
23822827 ATCCGATCTG
**
23822837 AGACTGGGAATGAACTGTGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
23822863 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
23822887 CTAAGTCAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:23824244 original size:159 final size:158
Alignment explanation
Indices: 23823790--23824244 Score: 461
Period size: 159 Copynumber: 2.9 Consensus size: 158
23823780 AACTCTGTAT
* * * * *
23823790 GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCTACGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAG
* * * * * * * *
23823855 -CTAGTCGGAGAGGCAAAATGTACAAGTCGGAGACCGACCCGATCCTCCCCTGTGTGCTATC-AT
66 CCGA-CCGAAGAGGCAAAATGCACAAGTCGGGGATCGACCCGATCC-CCCCTGCGTGCTGTCGA-
* **
23823918 TCTTGCTATCACAACCCTTGATCTGGTCTGA
128 TCCTGCTGCCACAACCCTTGATCTGGTCTGA
* * * * *
23823949 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAAAGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCA
* * * * * *
23824013 GCCGACAGAAGAGGCATAATGCGCAAGTCAGGGATTGACCCGATCCCCCTCTGCGTGCTGTCGGT
65 GCCGACCGAAGAGGCAAAATGCACAAGTCGGGGATCGACCCGATCCCCC-CTGCGTGCTGTCGAT
* * *
23824078 GCC-GCTGCCACAACCCTTGGTTTGG-CTGGG
129 -CCTGCTGCCACAACCCTTGATCTGGTCT-GA
* * * *
23824108 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAG
* * * *
23824173 CCGACCGAAGAGGCAGAATGCACAAGACGGGGATCGGCCCGATACCCCCCTGCGTGCTGCCGATC
66 CCGACCGAAGAGGCAAAATGCACAAGTCGGGGATCGACCCGAT-CCCCCCTGCGTGCTGTCGATC
23824238 CTGCTGC
130 CTGCTGC
23824245 TGATCCTACT
Statistics
Matches: 240, Mismatches: 47, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
158 8 0.03
159 223 0.93
160 9 0.04
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAG
CCGACCGAAGAGGCAAAATGCACAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTTGATCTGGTCTGA
Found at i:23824636 original size:513 final size:510
Alignment explanation
Indices: 23823594--23824868 Score: 1529
Period size: 513 Copynumber: 2.5 Consensus size: 510
23823584 AACTCCATAT
* * * *
23823594 GCTTAGACATTGAATGAACTACCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAG
*
23823659 CCGGCCGGAGAGGCAGAATGCACAAGACGGGGATCGACCCGATCCCCCCTGCATACTGCTGATCC
66 CCGGCCGGAGAGGCAGAATGCACAAGACGGGGATCGACCCGATCCCCCCTGC-T-CTGCCGATCC
* * * * *
23823724 TGCTACTGGTCCTACTATCGCAACCCTCAGTCCGATCCAATTTTAGACTAGGAATGAACTCTGTA
129 TGCT-CTGATCCTACTATCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTA
* * * *
23823789 TGCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCTACGAAACGAGTGTGCGGGCGCTCA
193 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
23823854 GCTAGTCGGAGAGGCAAAATGTACAAGTCGGAGACCGACCCGATCCTCCCCTGTGTGCTATCATT
258 GCCAGCCGGACAGGCAAAACG-ACAAGCCGGAGACCGACCCGATCCTCCCCTGCGTACTATCATT
* ** * * *
23823919 CTTGCTATCACAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTC
322 CCTGCTATCACAACCCTCAATCTGGTCCGATCTTAGACTAGGAATCAACTCCGTATGCATAAGTC
* * * *
23823984 AACCCATGAAAAGAGCGTGCGGGCGCTGAGCCGACAGAAGAGGCATAATGCGCAAGTCAGGGATT
387 AACCCACGAAAAGAGCGTGCAGGCGCTGAGCCGACAGAAGAGGCATAATGCGCAAGCCAGGGATA
* * ** * * ****
23824049 GACCCGATCCCCCTCTGCGTGCTGTCGGTGCCGCTGCCACAACCCTTGGTTTGGCTGGG
452 GACCCGATCCCCCTCTACGTGCTGCCGGACCCGCTACCACAACCCTTAGTCCAACTGGG
* *
23824108 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAG
* * *
23824173 CCGACCGAAGAGGCAGAATGCACAAGACGGGGATCGGCCCGATACCCCCCTGCGTGCTGCCGATC
66 CCGGCCGGAGAGGCAGAATGCACAAGACGGGGATCGACCCGAT-CCCCCCTGC-T-CTGCCGATC
* * * *
23824238 CTGCTGCTGATCCTACTACCGCAACCCTCGGTGCGGTCCAAACTTAGACTAGGAATGAACTCCAT
128 CTGCT-CTGATCCTACTATCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGT
* * *
23824303 ATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGCTC
192 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* ** * *
23824368 AGCCGGCCGGACAGGCAAATACG-CAAGCC-GAGGATTGACCCGGTCC-CCCCTGCGTACTGTCG
257 AGCCAGCCGGACAGGCAAA-ACGACAAGCCGGA-GACCGACCCGATCCTCCCCTGCGTACTATC-
* * *
23824430 A-TCCTGCTATCGCAACCCTCAATCTGGTCCGATCTTAGACTAGGAATCAACTCTGTATGCCTAA
319 ATTCCTGCTATCACAACCCTCAATCTGGTCCGATCTTAGACTAGGAATCAACTCCGTATGCATAA
* * * * *
23824494 GTCAACCCACGAAATGAGCGTGCAGGCGCTGAGCTGGCCGAAGAGGCATAATGCGCAAGCCGGGG
384 GTCAACCCACGAAAAGAGCGTGCAGGCGCTGAGCCGACAGAAGAGGCATAATGCGCAAGCCAGGG
* *
23824559 ATCAGA-CCGGTCCCCCTCTATGTGCTGCCGGACCCGCTACCACAA-CCTTCAGTCCAACTGGG
449 AT-AGACCCGATCCCCCTCTACGTGCTGCCGGACCCGCTACCACAACCCTT-AGTCCAACTGGG
* *
23824621 GCTTAGACATGGAATGAACTCCCTTTGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAG
* * * ** * * * *
23824686 CCGGTCGGACAGGCAAAATGTGCAAGCCAGGGATCGACCCGGT--CCCC--CT-TG-C-ATGCTG
66 CCGGCCGGAGAGGCAGAATGCACAAGACGGGGATCGACCCGATCCCCCCTGCTCTGCCGATCCTG
* * * *
23824744 -TC-GATCCTACTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGC
131 CTCTGATCCTACTATCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGC
** * *
23824807 TTAGAC-TGGGGTTGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCA
196 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
23824869 ACCGACCAGA
Statistics
Matches: 653, Mismatches: 101, Indels: 28
0.84 0.13 0.04
Matches are distributed among these distances:
499 1 0.00
500 106 0.16
501 1 0.00
502 1 0.00
503 5 0.01
504 1 0.00
505 2 0.00
507 1 0.00
508 1 0.00
510 4 0.01
512 4 0.01
513 259 0.40
514 118 0.18
515 147 0.23
516 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (510 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAG
CCGGCCGGAGAGGCAGAATGCACAAGACGGGGATCGACCCGATCCCCCCTGCTCTGCCGATCCTG
CTCTGATCCTACTATCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGC
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
AGCCGGACAGGCAAAACGACAAGCCGGAGACCGACCCGATCCTCCCCTGCGTACTATCATTCCTG
CTATCACAACCCTCAATCTGGTCCGATCTTAGACTAGGAATCAACTCCGTATGCATAAGTCAACC
CACGAAAAGAGCGTGCAGGCGCTGAGCCGACAGAAGAGGCATAATGCGCAAGCCAGGGATAGACC
CGATCCCCCTCTACGTGCTGCCGGACCCGCTACCACAACCCTTAGTCCAACTGGG
Found at i:23824816 original size:26 final size:26
Alignment explanation
Indices: 23824780--23824832 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23824770 CCGGTCCGAT
*
23824780 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
23824806 CTTAGACTGGGGTTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23824832 C
1 C
23824833 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23826251 original size:26 final size:25
Alignment explanation
Indices: 23826213--23826261 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 25
23826203 GGCTCAAAAT
23826213 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAAC-CCGTATG
23826239 CTTAGAC-ATGGAATGAACCCGTA
1 CTTAGACTA-GGAATGAACCCGTA
23826262 CGCCTAAGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.24
Consensus pattern (25 bp):
CTTAGACTAGGAATGAACCCGTATG
Found at i:23826539 original size:159 final size:159
Alignment explanation
Indices: 23826238--23826704 Score: 392
Period size: 159 Copynumber: 3.0 Consensus size: 159
23826228 AACTCCGTAT
* * * * * * **
23826238 GCTTAGACATGGAATGAAC-CCGTACGCCTAAGCCAACCCACGAAAA-GAGCGTACGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCAC-AAAACGAGTGTGCGGGCGCTGG
* * * *** * *
23826301 ACCCGCCGAAGAGGCAGAATGCGCAAGTTGGGGATCGGCCCGGACCCCCCCTGTGTGCTATCGAT
65 GCCGGTCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGACCCCCCCTGCGTGCTACCGAT
* * *
23826366 CCTGCTGTCGCAACCCTCGGTCTGG-TCCAA
130 CCCGCTGCCACAACCCTCGGTCTGGCT-CAA
* * *
23826396 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGTGTGCGGGCGCTGG
1 GCTTAGACAT-GGAATGAACTCCCTATGCATAAGCCAACCCACAAAACGAGTGTGCGGGCGCTGG
* * * * *
23826460 GCCGGTCGAAGAGGCATAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCC-AG
65 GCCGGTCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGACCCCCCCTGCGTGCTACCGA-
***
23826524 TCCCGCTGCCACAACCCTCGGTCTGGCTGGG
129 TCCCGCTGCCACAACCCTCGGTCTGGCTCAA
* * * * ***
23826555 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACAAAACGAGTGTGCGGGCGCTGGG
** * * * * * *
23826620 CCGACCGGAGAGGCAGAATGCGCAAG-CTGGGGTCAGG-TCGG-TCCCCCTTGCGTGCTACCGAT
66 CCGGTCGAAGAGGCAGAATGCGCAAGCCAGGGATC-GGCCCGGACCCCCCCTGCGTGCTACCGAT
** * *
23826682 CCTACTACCGCAACCCTCGGTCT
130 CCCGCTGCCACAACCCTCGGTCT
23826705 AGTCTGCTCT
Statistics
Matches: 247, Mismatches: 54, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
157 35 0.14
158 31 0.13
159 179 0.72
160 2 0.01
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACAAAACGAGTGTGCGGGCGCTGGG
CCGGTCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGACCCCCCCTGCGTGCTACCGATC
CCGCTGCCACAACCCTCGGTCTGGCTCAA
Found at i:23827592 original size:158 final size:158
Alignment explanation
Indices: 23827224--23827592 Score: 370
Period size: 158 Copynumber: 2.3 Consensus size: 158
23827214 CTGGTCTTGC
* * * *
23827224 TGCCACAACCCTCGATCCAGTCCGATCTTAGACTGGAAATGAACTCTATATGCCTAAGTCAACCC
1 TGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCC
* * * * * *
23827289 ACGAAATAAGCGTGCAGGCGTTGAGCCAACCGGAGAGGCATAATGACAAGCCAGGGATTGTCCCG
66 ACGAAACAAGCGTGCAGGCGCTCAGCCAACCGGAGAGGCAGAATGACAAGCCAGGGATCGGCCCG
* * *
23827354 GTCCCCCTTTGCGTGTGTCGGTCCCGCT
131 GTCCCCCTTTGCGTGTATCGATCCCACT
* ** **
23827382 TGCCACAACCCTCGGTCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAAC
1 TGCCACAACCCTCGATCCGGTCT-GATCTTAGAC-TGGGAATGAACTCTATATGCCTAAGCCAAC
* ** * ** *
23827445 CCATGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGC
64 CCACGAAACAAGCGTGCAGGCGCTCAGCCAACCGGAGAGGCAGAATG-ACAAGCCAGGGATCGGC
* *
23827510 CCGTTACCCCC-TT-CGTGCTATCGATCCTAC-
128 CCGGT-CCCCCTTTGCGTG-TATCGATCCCACT
*** * *
23827540 TGTTGCAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
1 TGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGC
23827593 TTAGACTGGG
Statistics
Matches: 168, Mismatches: 36, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 130 0.77
159 31 0.18
160 5 0.03
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (158 bp):
TGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCC
ACGAAACAAGCGTGCAGGCGCTCAGCCAACCGGAGAGGCAGAATGACAAGCCAGGGATCGGCCCG
GTCCCCCTTTGCGTGTATCGATCCCACT
Found at i:23828473 original size:26 final size:26
Alignment explanation
Indices: 23828434--23828487 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
23828424 GGTCTGATCT
23828434 TAGACTGGGAATGAACTCCATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
*
23828460 TAGACTGCGG-ATGAACTCCGTATGCC
1 TAGACTG-GGAATGAACTCCATATGCC
23828486 TA
1 TA
23828488 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Found at i:23828784 original size:15 final size:12
Alignment explanation
Indices: 23828752--23828781 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
23828742 TCCCCCTATG
23828752 TGCTGCCAATCT
1 TGCTGCCAATCT
23828764 TGCTGCCAATCT
1 TGCTGCCAATCT
23828776 TGCTGC
1 TGCTGC
23828782 TGCAACCCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.33, G:0.20, T:0.33
Consensus pattern (12 bp):
TGCTGCCAATCT
Found at i:23829356 original size:26 final size:26
Alignment explanation
Indices: 23829306--23829358 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23829296 CCGGTCCAAT
**
23829306 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23829332 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23829358 C
1 C
23829359 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23834021 original size:26 final size:26
Alignment explanation
Indices: 23833983--23834033 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23833973 CTAGTAGGAT
*
23833983 CTTAGACTAGGAATGAACTCTGTATA
1 CTTAGACTAGGAATGAACTCCGTATA
23834009 CTTAGAC-ATGGAATGAACTCCGTAT
1 CTTAGACTA-GGAATGAACTCCGTAT
23834034 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATA
Found at i:23834510 original size:26 final size:26
Alignment explanation
Indices: 23834472--23834524 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23834462 CCGATCCGAT
*
23834472 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23834498 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23834524 C
1 C
23834525 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23834999 original size:158 final size:158
Alignment explanation
Indices: 23834498--23834999 Score: 469
Period size: 158 Copynumber: 3.2 Consensus size: 158
23834488 ACTTCGTATG
* *
23834498 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA-CAGAATGAGCATGCGGGCGCTCA
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGA-AATGAGCATGCAGGCGCTCA
* * * * * *
23834561 GCAGATCGAAGAGACAGAATGCACAAGTCGAGGATCGACCCGATCCCGT-TTGCATGCTATCGAT
64 GCTGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCC-TCTTGCGTGCTATCGAT
* * *
23834625 CCTGCTACCACAACCCTCGGTCCGATCTGAT
128 CCTGCTACCATAACCCTCGATCCGATCCGAT
* * * * * * * * *
23834656 CTTAGACTGGAAATGAACTCTGTATGCCTAAGTCAACTCATGAAACGAGCGTGCTA-GCACTGAG
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGC-AGGCGCTCAG
* * * * * * * *
23834720 CTGACCAGAGAGGCATAATGCGCAAGCAGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTC
65 CTGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCTCT-TGCGTGCTATCGATC
* * **
23834785 CTGCTACCATAACCCTTGATCCGGCTGGGAT
129 CTGCTACCATAACCCTCGATCC-GATCCGAT
* * * *
23834816 -TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCAGGTGCTCAA
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCAGGCGCTCAG
* * * * *
23834879 CTGGTCGGAGAGGCAGAATGCGCAAGCCGTGGATCG-GCCTAGTCCCTCTTTCGTGCTATCGATC
65 CTGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGA-TCCCTCTTGCGTGCTATCGATC
* * *
23834943 CTGCTGCCATAACCCTCAATCCGATCCAAT
129 CTGCTACCATAACCCTCGATCCGATCCGAT
* *
23834973 CTTAGATTGGGAATGAAGTCCGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
23835000 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 66, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 6 0.02
158 141 0.53
159 114 0.43
160 6 0.02
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (158 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCAGGCGCTCAGC
TGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCTCTTGCGTGCTATCGATCCT
GCTACCATAACCCTCGATCCGATCCGAT
Found at i:23835002 original size:26 final size:26
Alignment explanation
Indices: 23834973--23835025 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23834963 CCGATCCAAT
* *
23834973 CTTAGATTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23834999 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23835025 C
1 C
23835026 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23835161 original size:184 final size:184
Alignment explanation
Indices: 23834827--23835222 Score: 524
Period size: 184 Copynumber: 2.2 Consensus size: 184
23834817 TAGACATGGA
* * * * * *
23834827 ATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCAGGTGCTCAACTGGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCATGAAATGGGCATGCAGGCGATCAACCGATCGGAGAGG
* * * * * *
23834892 CAGAATGCGCAAGCCGTGGATCGGCCTAGTCCCTCTTTCGTGCTATCGATCCTGCTGCCATAACC
66 CAGAATGCGCAAGCCGGGGATCGGCCTAGTCCCCCCTACGTGCTACCGATCCTGCTGCCACAACC
* * *
23834957 CTCAATCCGATCCAATCTTAGATTGGGAATGAAGTCCGTATGCTTAGACTGGGG
131 CTCAATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGGG
* *
23835011 ATGAACTCCGTATGCCTAAGTCAACCCATGAAATGGGCTTGCAGGCGATCAGCCGATCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCATGAAATGGGCATGCAGGCGATCAACCGATCGGAGAGG
* * **
23835076 TAGAATGCGTAAGCCGGGGATCGGCCCT-GTCCCCCCTACGTGCTACCGATCCTGCTGCGGCAAC
66 CAGAATGCGCAAGCCGGGGATCGG-CCTAGTCCCCCCTACGTGCTACCGATCCTGCTGCCACAAC
* * * * * *
23835140 CTTCAGTCCGGTTCGATCTTAGACTGGGGATGAACTCCGTATACTTAGACTGGGG
130 CCTCAATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGGG
*
23835195 ATGAACTCCGTATGCCTAAGTTAACCCA
1 ATGAACTCCGTATGCCTAAGTCAACCCA
23835223 CGGAACGAGC
Statistics
Matches: 183, Mismatches: 28, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
184 180 0.98
185 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (184 bp):
ATGAACTCCGTATGCCTAAGTCAACCCATGAAATGGGCATGCAGGCGATCAACCGATCGGAGAGG
CAGAATGCGCAAGCCGGGGATCGGCCTAGTCCCCCCTACGTGCTACCGATCCTGCTGCCACAACC
CTCAATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGGG
Found at i:23835186 original size:26 final size:26
Alignment explanation
Indices: 23835157--23835207 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
23835147 CCGGTTCGAT
23835157 CTTAGACTGGGGATGAACTCCGTATA
1 CTTAGACTGGGGATGAACTCCGTATA
23835183 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGGATGAACTCCGTAT
23835208 GCCTAAGTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATA
Found at i:23835258 original size:184 final size:184
Alignment explanation
Indices: 23834827--23835573 Score: 512
Period size: 184 Copynumber: 3.9 Consensus size: 184
23834817 TAGACATGGA
* * * * * * * * * * **
23834827 ATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCAGGTGCTCAACTGGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGATCAGCCGACCGGAGAGG
* * * * * *
23834892 CAGAATGCGCAAGCCGTGGATCGGCCTAGTCCCTCTTTCGTGCTATCGATCCTGCTGCCATAACC
66 CAGAATGCGCAAGCCGGGGATCGGCCTAGTCCCCCCTACGTGCTACCGATCCTGCTGCCACAACC
* * *
23834957 CTCAATCCGATCCAATCTTAGATTGGGAATGAAGTCCGTATGCTTAGACTGGGG
131 CTCAATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGGG
* * * * *
23835011 ATGAACTCCGTATGCCTAAGTCAACCCATGAAATGGGCTTGCAGGCGATCAGCCGATCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGATCAGCCGACCGGAGAGG
* * **
23835076 TAGAATGCGTAAGCCGGGGATCGGCCCT-GTCCCCCCTACGTGCTACCGATCCTGCTGCGGCAAC
66 CAGAATGCGCAAGCCGGGGATCGG-CCTAGTCCCCCCTACGTGCTACCGATCCTGCTGCCACAAC
* * * * * *
23835140 CTTCAGTCCGGTTCGATCTTAGACTGGGGATGAACTCCGTATACTTAGACTGGGG
130 CCTCAATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGGG
* * *
23835195 ATGAACTCCGTATGCCTAAGTTAACCCACGGAACGAGCGTGCGGGC-ATCCAGCCAGCCGGAGAG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGAT-----CAGCC-----G
* * * * * *
23835259 ACCAGTTGGAGAGGCAGAATACGCAAGTCGAGGATCGTCCTTGTCCCCCCTACGTGCTATCGATC
56 ACC----GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTAGTCCCCCCTACGTGCTACCGATC
* * ** * * ** *
23835324 ATGCTACATTCCTACTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTA
117 ---CTGC--TGC--C-A-C--AACCCTCAATCCGATCCAATCTTAGACTGGGAATGAACTCCGTA
* ** *
23835389 TGCTTAGACAAGGA
171 TACTTAGACTGGGG
* * * * *
23835403 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-ACTCAGTCGGCAGGAGAG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGA-TCAGCCGACCGGAGAG
* ** * * * ** * * **
23835467 GCAGAATGCGTAAGCTAGGGACCGACC-CGATCCCCCCTACGTGCTGTCGATCCTTCTACCGTAA
65 GCAGAATGCGCAAGCCGGGGATCGGCCTAG-TCCCCCCTACGTGCTACCGATCCTGCTGCCACAA
* * *
23835531 CCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
129 CCCTCAATCCGATCCAATCTTAGACTGGGAATGAACTCCGTAT
23835574 GCCTAAGTCA
Statistics
Matches: 451, Mismatches: 83, Indels: 58
0.76 0.14 0.10
Matches are distributed among these distances:
183 2 0.00
184 231 0.51
185 3 0.01
188 6 0.01
190 2 0.00
192 3 0.01
193 3 0.01
194 1 0.00
195 46 0.10
196 3 0.01
197 47 0.10
199 2 0.00
200 3 0.01
202 2 0.00
204 4 0.01
206 1 0.00
208 91 0.20
209 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (184 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGATCAGCCGACCGGAGAGG
CAGAATGCGCAAGCCGGGGATCGGCCTAGTCCCCCCTACGTGCTACCGATCCTGCTGCCACAACC
CTCAATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGGG
Found at i:23835403 original size:26 final size:26
Alignment explanation
Indices: 23835365--23835417 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23835355 CTGGTCTGAT
** *
23835365 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
23835391 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
23835417 C
1 C
23835418 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:23835901 original size:26 final size:26
Alignment explanation
Indices: 23835866--23835917 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23835856 CGATCTGCTT
*
23835866 TTAGATTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
23835892 TTAGACTGGGGATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
23835918 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:23836776 original size:26 final size:26
Alignment explanation
Indices: 23836738--23836790 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23836728 CTGGTCCGAT
*
23836738 CTTAGACTGGGAATGGACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
23836764 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
23836790 C
1 C
23836791 CTAAGCCACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23836908 original size:184 final size:184
Alignment explanation
Indices: 23836581--23836948 Score: 420
Period size: 184 Copynumber: 2.0 Consensus size: 184
23836571 CGGCTAGGGT
* ** * *
23836581 TTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGACGCTCAGTC
1 TTAGACATGCAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCAGACACTCAGCC
** * * * * * *
23836646 GGTCGGGGAGGCAGAATGCGCAAGCTGGGGATCAGTCCGATCCCCCCTGCATGCTGTCGATCCTG
66 AATCGGGGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTACATGCTATCGATCCTG
* ** * *
23836711 CTGTCGTAACCCTC-GATCTGGTCCGATCTTAGACTGGGAATGGACTCCATATGC
131 CTGTCGCAACCCTCAGATC-AATCCAATCTTAGACTGGGAATGAACTCCATATGC
* * * *
23836765 TTAGACATGGAATGAACTCTATATGCCTAAGCC-ACCCACGGAACAAGCGTGCAGGCACTCAGCC
1 TTAGACATGCAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCAGACACTCAGCC
* * *
23836829 AATCGGAGG-GGTAAAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTTACGTGCTATCGATCC
66 AATCGG-GGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGATCCCCCC-TACATGCTATCGATCC
* * *
23836893 TGCTG-CTGCAACCCTCAGTTCAATCTAATCTTAGACTGGGAATGAACTCCGTATGC
129 TGCTGTC-GCAACCCTCAGATCAATCCAATCTTAGACTGGGAATGAACTCCATATGC
23836949 CTAAGTCAAC
Statistics
Matches: 152, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
183 62 0.41
184 87 0.57
185 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (184 bp):
TTAGACATGCAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCAGACACTCAGCC
AATCGGGGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTACATGCTATCGATCCTG
CTGTCGCAACCCTCAGATCAATCCAATCTTAGACTGGGAATGAACTCCATATGC
Found at i:23836996 original size:501 final size:499
Alignment explanation
Indices: 23836051--23837341 Score: 1467
Period size: 501 Copynumber: 2.6 Consensus size: 499
23836041 GGTCCTGCTG
* *
23836051 CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * *
23836116 GAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGTGCAAG-TCGGGGATCGGCCCG
66 GAAACGGGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCT-GGGGATC-GACCG
* *
23836180 GTCCCCCCTACGTGCTGTTGATCCTGCTGCTGGTCCTGCTGCTGCAACCCTCGGTCCGGTCCGAT
129 ATCCCCCCTACGTGCTGTCGAT-C--CTGCT-G---T-C-G-T--AACCCTCGGTCCGGTCCGAT
* *
23836245 CTTAGACTGGGAATGAACTCTGTGTGCTTAGACATGGAATGAACTCCATA----T-G-C-CCCAC
182 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAGCCACCCAC
* * * * * * *
23836303 GAAACGAGCGTGCGGGCGCTCAGCTAACCGGAGATGCAGAATGCATAGGTCGAGGATCGACCCAG
247 GAAACGAGCGTGCGGGCACTCAGCCAACCGGAGAGGCAAAATGCACAAGCCGAGGATCGACCCAG
* * * * *
23836368 TCCCCCCATGCATGCTATTGATCCTGCTACCGCAACCCTCAGTCTGATCCGATCTTAGATTGGGA
312 TCCCCCCATACATGCTATCGATCCTGCTACCGCAACCCTCAGTCTAATCCAATCTTAGACTGGGA
* * *
23836433 ATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAATGTGTGGGTGCTGAGCCGACCGGAGAGG
377 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGGTGCTGAGCCGACCGGAGAGG
** * * *
23836498 CATAATACGCAAGTCAGGG-ATCGGTCTGGTCCACCTCTGCATGCTGCCGATCCCGTTA
442 CATAATACGCAAG-CAGGGCATCGACCCGATCCACCTCTGCATGCTGCCGATCCCGCTA
* * * * *
23836556 CCACAACCCTCGGTCCGGCTAGGGTTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * *
23836621 GAAACGGGCGTGCAGACGCTCAGTCGGTCGGGGAGGCAGAATGCGCAAGCTGGGGATCAGTCCGA
66 GAAACGGGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATC-GACCGA
* * * *
23836686 TCCCCCCTGCATGCTGTCGATCCTGCTGTCGTAACCCTCGATCTGGTCCGATCTTAGACTGGGAA
130 TCCCCCCTACGTGCTGTCGATCCTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* * * * *
23836751 TGGACTCCATATGCTTAGACATGGAATGAACTCTATATGCCTAAGCCACCCACGGAACAAGCGTG
195 TGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCT-AGCCACCCACGAAACGAGCGTG
* * * * * * *
23836816 CAGGCACTCAGCCAATCGGAGGGGTAAAATGCGCAAGCCGAGGATCGGCCC-GATCCCCCCTTAC
259 CGGGCACTCAGCCAACCGGAGAGGCAAAATGCACAAGCCGAGGATCGACCCAG-TCCCCCCATAC
* * * *
23836880 GTGCTATCGATCCTGCTGCTGCAACCCTCAGT-TCAATCTAATCTTAGACTGGGAATGAACTCCG
323 ATGCTATCGATCCTGCTACCGCAACCCTCAGTCT-AATCCAATCTTAGACTGGGAATGAACTCCG
* * *
23836944 TATGCCTAAGTCAACCCACT-AAACGAACGTGCGGGTGCTGAGCCGGCCGGAGAGTCATAATGCG
387 TATGCCTAAGTCAACCCA-TGAAACGAACGTGCGGGTGCTGAGCCGACCGGAGAGGCATAATACG
* * * * * *
23837008 TAAGCCGGGCATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTA
451 CAAGCAGGGCATCGACCCGATCCACCTCTGCATGCTGCCGATCCCGCTA
*
23837057 CCACAACCGTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * * **
23837122 GAAACAGGCGTGTGGGTGCTCAGTCAGG-CGGAAAGGCAGAATGCGCAAGCCAGGGATCGACCTG
66 GAAACGGGCGTGCGGGCGCTCAGTC-GGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACC-G
* * * * * *
23837186 ATCCCCCCTACGTGCTATCGATCCTACTGTCGTAACCTTTGGTCCGATCTGATCTTAGACTGGGA
129 ATCCCCCCTACGTGCTGTCGATCCTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* * * *
23837251 ATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTTAGTCAACCCACAAAACGAGC
194 ATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCATATGCC-TAG-CCACCCACGAAACGAGC
* * *
23837315 GTGCGGGCACTCAACCGACCAGAGAGG
256 GTGCGGGCACTCAGCCAACCGGAGAGG
23837342 TAGGATGCGT
Statistics
Matches: 659, Mismatches: 109, Indels: 39
0.82 0.14 0.05
Matches are distributed among these distances:
493 63 0.10
495 1 0.00
496 1 0.00
497 2 0.00
498 1 0.00
499 1 0.00
500 11 0.02
501 404 0.61
502 43 0.07
504 1 0.00
505 130 0.20
506 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (499 bp):
CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
GAAACGGGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCGAT
CCCCCCTACGTGCTGTCGATCCTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
GAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAGCCACCCACGAAACGAGCGTGCG
GGCACTCAGCCAACCGGAGAGGCAAAATGCACAAGCCGAGGATCGACCCAGTCCCCCCATACATG
CTATCGATCCTGCTACCGCAACCCTCAGTCTAATCCAATCTTAGACTGGGAATGAACTCCGTATG
CCTAAGTCAACCCATGAAACGAACGTGCGGGTGCTGAGCCGACCGGAGAGGCATAATACGCAAGC
AGGGCATCGACCCGATCCACCTCTGCATGCTGCCGATCCCGCTA
Found at i:23837064 original size:159 final size:156
Alignment explanation
Indices: 23836843--23837265 Score: 413
Period size: 159 Copynumber: 2.7 Consensus size: 156
23836833 GGAGGGGTAA
* *
23836843 AATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTTACGTGCTATCGATCCTGCTGCTGCAACCCT
1 AATGCGCAAGCCG-GGATCGACCCGATCCCCCC-TACGTGCTATCGATCCTGCTGCCGCAACCCT
* *
23836908 CAGTTCAATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACT-AAAC-GAA
64 C-GTTCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCA-TGAAACAG-A
* * * * *
23836971 CGTGCGGGTGCTGAG-CCGGCCGGAGAGTCAT
126 CGTGCGGGTGCTCAGTCAGG-CGGAAAGGCAG
* * * * * * * *
23837002 AATGCGTAAGCCGGGCATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTACCACAACCGT
1 AATGCGCAAGCCGGG-ATCGACCCGATCCCCC-CTACGTGCTATCGATCCTGCTGCCGCAACCCT
* * * ** * *
23837067 CGGTCCAGCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGC
64 CGTTCAATCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGAC
*
23837131 GTGTGGGTGCTCAGTCAGGCGGAAAGGCAG
127 GTGCGGGTGCTCAGTCAGGCGGAAAGGCAG
* * * * *
23837161 AATGCGCAAGCCAGGGATCGACCTGATCCCCCCTACGTGCTATCGATCCTACTGTCGTAACCTTT
1 AATGCGCAAGCC-GGGATCGACCCGATCCCCCCTACGTGCTATCGATCCTGCTGCCGCAACC-CT
* * *
23837226 GGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
64 CGTTCAATCTGATCTTAGACTGGGAATGAACTCCGTATGC
23837266 TTAGACTGGG
Statistics
Matches: 209, Mismatches: 45, Indels: 21
0.76 0.16 0.08
Matches are distributed among these distances:
157 1 0.00
158 55 0.26
159 144 0.69
160 9 0.04
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.21
Consensus pattern (156 bp):
AATGCGCAAGCCGGGATCGACCCGATCCCCCCTACGTGCTATCGATCCTGCTGCCGCAACCCTCG
TTCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGACGTGC
GGGTGCTCAGTCAGGCGGAAAGGCAG
Found at i:23837268 original size:26 final size:27
Alignment explanation
Indices: 23837239--23837296 Score: 100
Period size: 26 Copynumber: 2.2 Consensus size: 27
23837229 CCGATCTGAT
23837239 CTTAGACTGGGAATGAACTCCGTATG-
1 CTTAGACTGGGAATGAACTCCGTATGC
*
23837265 CTTAGACTGGGGATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
23837292 CTTAG
1 CTTAG
23837297 TCAACCCACA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGTATGC
Found at i:23838284 original size:158 final size:158
Alignment explanation
Indices: 23837987--23838416 Score: 420
Period size: 158 Copynumber: 2.7 Consensus size: 158
23837977 ACTCTGTATG
* * * *
23837987 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCAAGAAACAAGCGTGCAGGCGCTCAGC
* * ** *
23838052 CAGTCGGAGAGGCAGAATGTGCAAGCCGAGGATCAGCCCGATCCCCCCTACGTACTGTCGACCTT
66 CAGCCGAAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCCTACGTACTGTCGACCTC
* *
23838117 GCTATCACAACCCTCGATCCGATCTGAT
131 ACTACCACAACCCTCGATCCGATCTGAT
* * * *
23838145 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAA-CCAAGAAACGAGCGTGCAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCAAGAAACAAGCGTGCAGGCGCTCAG
* * * * * * *
23838208 CC-GACCGAAGAGGCATAATGCATAAGCCGAGGATCGGCTCGATCCCCCTTCACGTGCTGTCGGT
65 CCAG-CCGAAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCCT-ACGTACTGTC-GA
* * * **
23838272 CC-CACTACCACAACCCTCGGTCTGGT-TGGGG
127 CCTCACTACCACAACCCTCGATCCGATCT-GAT
* * * * * *
23838303 CTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCAAGAAACAAGCGTGCAGGCGCTCAGC
* * ** * * *
23838368 CGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCCT
66 CAGCCGAAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCCT
23838417 CCATGCTACC
Statistics
Matches: 218, Mismatches: 46, Indels: 15
0.78 0.16 0.05
Matches are distributed among these distances:
156 1 0.00
157 63 0.29
158 88 0.40
159 65 0.30
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCAAGAAACAAGCGTGCAGGCGCTCAGC
CAGCCGAAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCCTACGTACTGTCGACCTC
ACTACCACAACCCTCGATCCGATCTGAT
Found at i:23839111 original size:26 final size:26
Alignment explanation
Indices: 23839070--23839122 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23839060 CTGGTCTGAT
*
23839070 CTTAGACTGGGAATGAACGCCTTATG
1 CTTAGACTGGGAATGAACGCCGTATG
*
23839096 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACGCCGTATG
23839122 C
1 C
23839123 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCGTATG
Found at i:23839830 original size:26 final size:26
Alignment explanation
Indices: 23839792--23839844 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23839782 GGCTCAAAAT
23839792 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23839818 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23839844 C
1 C
23839845 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23840612 original size:11 final size:11
Alignment explanation
Indices: 23840596--23840625 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
23840586 GACGACGCTC
23840596 CGGTGATGCTT
1 CGGTGATGCTT
23840607 CGGTGATGCTT
1 CGGTGATGCTT
23840618 CGGTGATG
1 CGGTGATG
23840626 GTGCCCCAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.10, C:0.17, G:0.40, T:0.33
Consensus pattern (11 bp):
CGGTGATGCTT
Found at i:23840733 original size:26 final size:26
Alignment explanation
Indices: 23840696--23840746 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23840686 GCTCAAAATC
*
23840696 TTAGACTGGGAATGAACTTCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
23840722 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
23840747 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:23840922 original size:25 final size:26
Alignment explanation
Indices: 23840880--23840929 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
23840870 CGATCTGATC
23840880 TTAGACTGAGAATGAACTCCATATGG
1 TTAGACTGAGAATGAACTCCATATGG
*
23840906 TTAGACT-AGGATGAACTCCATATG
1 TTAGACTGAGAATGAACTCCATATG
23840930 TATAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCATATGG
Found at i:23841355 original size:159 final size:159
Alignment explanation
Indices: 23841053--23841356 Score: 391
Period size: 159 Copynumber: 1.9 Consensus size: 159
23841043 ATCCCGTTGC
* * * *
23841053 CGGTCCTGTTGCCATAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
1 CGGTCCCGTTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTACGCCTA
* * * * *
23841118 AGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGAGGCAGAATGCACAAGTCATG
66 AGCCAACCCACGAAAAGAGCATGCGGGCGCTCAACCGACCAGAGAGACAGAATGCACAAGTCATG
* *
23841183 GATCGGCCTGATCCCACTCTGCGTGCTAA
131 GATCGACCCGATCCCACTCTGCGTGCTAA
* *
23841212 CGGTCCCGTTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAAT-AATCTCCCTACGCCT
1 CGGTCCCGTTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAA-CTCCCTACGCCT
* * **
23841276 AAGCCAACCCATGAAATAG-GCATGCGGGCGCTCAATCGACTGGAGAGACAGAATGCACAAG-C-
65 AAGCCAACCCACGAAA-AGAGCATGCGGGCGCTCAACCGACCAGAGAGACAGAATGCACAAGTCA
23841338 TGGATATCGACCCGATCCC
129 TGG--ATCGACCCGATCCC
23841357 CCTTACGTGC
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
157 3 0.02
158 3 0.02
159 117 0.94
160 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (159 bp):
CGGTCCCGTTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTACGCCTA
AGCCAACCCACGAAAAGAGCATGCGGGCGCTCAACCGACCAGAGAGACAGAATGCACAAGTCATG
GATCGACCCGATCCCACTCTGCGTGCTAA
Found at i:23841806 original size:26 final size:26
Alignment explanation
Indices: 23841756--23841807 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
23841746 TAGATTCGAT
*
23841756 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
23841782 CTTAGACAT-GGAATGAA-TTCCGTATG
1 CTTAGAC-TGGGAATGAACTT-CGTATG
23841808 GATAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 2 0.09
26 20 0.87
27 1 0.04
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:23842077 original size:159 final size:157
Alignment explanation
Indices: 23841782--23842600 Score: 659
Period size: 159 Copynumber: 5.2 Consensus size: 157
23841772 ACTTTGTATG
* ** * * * * *
23841782 CTTAGACATGGAATGAATTCCGTATGGATAAGCCAACCCATGAAACGAGCGTCCGGGCGCTCAAC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
* * ** * ** * * *
23841847 CGACCGAAGAGGCAGAATGCAAAAG-CCAGGGATTGGCCCGATCCCCCCTTATGTGCTATCGATC
65 CGGCCGGAGAGGCAGAATGCGTAAGTCGA-GGATCAGCCCGGTCCCCCC-TACGTGCTGTCGATC
*
23841911 CTACTGCCACAACCCTCGATCTGATCCGAT
128 CTGCTGCCACAACCCTCGATCTGATCCGAT
* * * ** *
23841941 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCATCCCACGAAACGAGCGTGCAGGCGTTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
* * * * * * * * *
23842006 CAGTCGGAGAGGTATAATGCGTAAG-CTGGGGAT-TGACCCAGTCCCCCTCTACGTGCTGCCGGT
65 CGGCCGGAGAGGCAGAATGCGTAAGTC-GAGGATCAG-CCCGGTCCCCC-CTACGTGCTGTCGAT
* * * **
23842069 CCTGCTGCCACAACCTTCTG-TCCGA-CTGGGG
127 CCTGCTGCCACAACCCTC-GATCTGATC-CGAT
* *
23842100 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCACTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
* * * * * **
23842165 TGGCCAGAGAGGCAGAATGAGCAAGTTGAGGATCAGCTTGGTCCCCCCTACGTGCTGTCGATCCT
65 CGGCCGGAGAGGCAGAATGCGTAAGTCGAGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCCT
* * *
23842230 GCTACCGCAACCCTCGATCTGATCTGAT
130 GCTGCCACAACCCTCGATCTGATCCGAT
* * * * * ** *
23842258 CTTAGACTGGAATGAACTCCGTATGCCTAAGTCATCCCATGAAATGAGCATGTGGGCACTGA-CT
1 CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC-
* * ** * *
23842322 CGGCCGGAGAGGCATAATGCGTAAGTCGAGGTTTGGCCCGATCCCCTTCTACGTGCTGTCGATCC
65 CGGCCGGAGAGGCAGAATGCGTAAGTCGAGGATCAGCCCGGTCCCC-CCTACGTGCTGTCGATCC
* * * * **
23842387 CGCTACCACAACCCTCGGT-TCGA-CTAGGG
129 TGCTGCCACAACCCTCGATCT-GATC-CGAT
* * * * * * *
23842416 CTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAAC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
* *
23842481 CGACCGAAGAGGCAGAATGCGTAAGTC-AGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCC
65 CGGCCGGAGAGGCAGAATGCGTAAGTCGA-GGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCC
* * *
23842545 TGCTGTCGCAACCCTCGAACT-AGTCCGAT
129 TGCTGCCACAACCCTCGATCTGA-TCCGAT
23842574 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
23842601 TTAGACTAGG
Statistics
Matches: 515, Mismatches: 123, Indels: 45
0.75 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 84 0.16
158 142 0.28
159 283 0.55
160 5 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCC
GGCCGGAGAGGCAGAATGCGTAAGTCGAGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCCTG
CTGCCACAACCCTCGATCTGATCCGAT
Done.