Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 238 of 402
Found at i:23842375 original size:316 final size:317
Alignment explanation
Indices: 23841781--23842600 Score: 990
Period size: 316 Copynumber: 2.6 Consensus size: 317
23841771 AACTTTGTAT
* * ** * * * *
23841781 GCTTAGACATGGAATGAATTCCGTATGGATAAGCCAACCCATGAAACGAGCGTCCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAA
* * ** * * *
23841846 CCGACCGAAGAGGCAGAATGCA-AAAGCCAGGGATTGGCCCGATCCCCCCTTATGTGCTATCGAT
66 CCGACCGAAGAGGCAGAATG-AGCAAGTCAGGGATCAGCCCGGTCCCCCC-TACGTGCTGTCGAT
* * *
23841910 CCTACTGCCACAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTC
129 CCTGCTGCCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* ** * * *
23841975 ATCCCACGAAACGAGCGTGCAGGCGTTGAGCCAGTCGGAGAGGTATAATGCGTAAGCTGGGGATT
194 ATCCCACGAAACGAGCATGCAGGCACTGAGCCAGCCGGAGAGGCATAATGCGTAAGCTGAGGATT
* * * * * *
23842040 GACCCAGTCCCCCTCTACGTGCTGCCGGTCCTGCTGCCACAACCTTCTGTCCGACTGGG
259 GACCCAGTCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACCCTCGGTCCGACTAGG
* *
23842099 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAA
* * * **
23842164 CTGGCC-AGAGAGGCAGAATGAGCAAGT-TGAGGATCAGCTTGGTCCCCCCTACGTGCTGTCGAT
66 CCGACCGA-AGAGGCAGAATGAGCAAGTCAG-GGATCAGCCCGGTCCCCCCTACGTGCTGTCGAT
* *
23842227 CCTGCTACCGCAACCCTCGATCTGATCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGTC
129 CCTGCTGCCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * ** * *
23842291 ATCCCATGAAATGAGCATGTGGGCACTGA-CTCGGCCGGAGAGGCATAATGCGTAAG-TCGAGGT
194 ATCCCACGAAACGAGCATGCAGGCACTGAGC-CAGCCGGAGAGGCATAATGCGTAAGCT-GAGGA
* * * *
23842354 TTGGCCC-GATCCCCTTCTACGTGCTGTCGATCCCGCTACCACAACCCTCGGTTCGACTAGG
257 TTGACCCAG-TCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACCCTCGGTCCGACTAGG
* * * * *
23842415 GCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAA
* *
23842480 CCGACCGAAGAGGCAGAATGCGTAAGTCAGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCC
66 CCGACCGAAGAGGCAGAATGAGCAAGTCAGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCC
* *
23842545 TGCTGTCGCAACCCTCGAACT-AGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
131 TGCTGCCGCAACCCTCGATCTGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGC
23842601 TTAGACTAGG
Statistics
Matches: 425, Mismatches: 67, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
315 4 0.01
316 263 0.62
317 70 0.16
318 88 0.21
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAA
CCGACCGAAGAGGCAGAATGAGCAAGTCAGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCC
TGCTGCCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAT
CCCACGAAACGAGCATGCAGGCACTGAGCCAGCCGGAGAGGCATAATGCGTAAGCTGAGGATTGA
CCCAGTCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACCCTCGGTCCGACTAGG
Found at i:23843638 original size:157 final size:157
Alignment explanation
Indices: 23843295--23843638 Score: 361
Period size: 157 Copynumber: 2.2 Consensus size: 157
23843285 TGGCTCAAAC
*
23843295 TCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAA
1 TCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCACTCAA
* * * ** *** *
23843360 CTGACCGGAGAGGCAGAATTCACAGGCCGGGGATTGGCCCGATCCCCCTCTACGTGCTGTTGGTC
66 CGGA-C-GAGAGGCAAAATGCACAGGCCGGGGACCGGCCCGATCCCCCTCTACGTGCTACCGATC
* *
23843425 CCGCTGCCACAACCCTCGGTCCGGCTAGG
129 CCGCTGCCACAACCCTCGGTCCAGCTAGA
* * * ** * **
23843454 GCTTAGAC-ATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGTGTACGGGTGCTCA
1 TCTTAGACTA-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCACTCA
* * *
23843518 ATCGGTA-GAGAGGTAAAATGCACATGCCGGGGACCGGCCCGATCCCCC-CTGCGTGCTACCGAT
65 A-CGG-ACGAGAGGCAAAATGCACAGGCCGGGGACCGGCCCGATCCCCCTCTACGTGCTACCGAT
* * * * * *
23843581 CCTGCTGTCGCAACCCTCGGTCTAGTTTGA
128 CCCGCTGCCACAACCCTCGGTCCAGCTAGA
23843611 TCTTAGACTAGGAATGAACTTCGTATGC
1 TCTTAGACTAGGAATGAACTTCGTATGC
23843639 TTAGATTGGG
Statistics
Matches: 149, Mismatches: 32, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
157 55 0.37
158 37 0.25
159 54 0.36
160 2 0.01
161 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (157 bp):
TCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCACTCAA
CGGACGAGAGGCAAAATGCACAGGCCGGGGACCGGCCCGATCCCCCTCTACGTGCTACCGATCCC
GCTGCCACAACCCTCGGTCCAGCTAGA
Found at i:23844147 original size:158 final size:158
Alignment explanation
Indices: 23843846--23844153 Score: 352
Period size: 158 Copynumber: 1.9 Consensus size: 158
23843836 AACTTCGGAT
** *
23843846 GCTTAGACATGGAATAAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATAAACTCCCTATGCCAAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
** * * * *
23843911 CCGATCGGAGAGTTAGAATACGTAAGTCGAGGATGACCCGGTCCCCTTCTACGTGCTGTCGGTCC
66 CCGATCGGAGAGGCAGAATACATAAGCCGAGGATGACCCGGTCCCCCTCTACGTGCTGTCGATCC
*
23843976 CGCTACCACAACCCTCGATCAGACTGGG
131 CACTACCACAACCCTCGATCAGACTGGG
* * *
23844004 GCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCACT-AAACGGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATAAACTCCCTATGCCAAAGCCAACCCA-TGAAACGAGCGTGCGGGCACTCA
** * * * * *
23844068 GTCGGTCGGAGAGGCAGAATGCATAAGCCGGGGATCGACTCGGTCCCCCT-TGCGTGCTG-CTGA
65 ACCGATCGGAGAGGCAGAATACATAAGCCGAGGAT-GACCCGGTCCCCCTCTACGTGCTGTC-GA
* * **
23844131 TCCTACTATCGTAACCCTCGATC
128 TCCCACTACCACAACCCTCGATC
23844154 TGATTAGATC
Statistics
Matches: 123, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
157 1 0.01
158 109 0.89
159 13 0.11
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATAAACTCCCTATGCCAAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
CCGATCGGAGAGGCAGAATACATAAGCCGAGGATGACCCGGTCCCCCTCTACGTGCTGTCGATCC
CACTACCACAACCCTCGATCAGACTGGG
Found at i:23844482 original size:551 final size:551
Alignment explanation
Indices: 23843317--23844485 Score: 1439
Period size: 551 Copynumber: 2.1 Consensus size: 551
23843307 AATGAACTTC
* * * *
23843317 GTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAACTGACCGGAGAGGCAGAATTCA
1 GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACTGATCGGAGAGGCAGAATACG
* * * * * * * *
23843382 CAGGCCGGGGATTGGCCCGATCCCCCTCTACGTGCTGTTGGTCCCGCTGCCACAACCCTCGGTCC
66 TAAGCCGAGGATTGACCCGATCCCCCTCTACGTGCTGTCGGTCCCGCTACCACAACCCTCGATCA
* * * *
23843447 GGCTAGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGTGTACGGG
131 GACTAGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGGGCGTACGGG
* * * *
23843512 TGCTCAATCGGTAGAGAGGTAAAATGCACATGCCGGGGACCGGCCCGATCCCCCCTGCGTGCTAC
196 CGCTCAATCGGTAGAGAGGCAAAATGCACAAGCCGGGGACCGACCCGATCCCCCCTGCGTGCTAC
* * * * * *
23843577 CGATCCTGCTGTCGCAACCCTCGGTCTAGTTTGATCTTAGACTAGGAATGAACTTCGTATGCTTA
261 CGATCCTACTATCGCAACCCTCGATCTAGTTAGATCTAAGACTAGGAATGAACTCCGTATGCTTA
* * * * * * ***
23843642 GATTGGGGATGAAATCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGCGGGCGCTTAGTCGGT
326 GACTGGGGATGAAATCCGTATCCCTAAGTCAAGCCACGAAACAAGCGTGCGGGCACTCAGCCCAC
* * * * * * **
23843707 TGGAGAGGCCGACTGGAGAGGCAGAATGCACAAGCCGATGATCGACCCAATCCCCCGTGTATGCT
391 CGGAGAGGCCGACCGGAGACGCAAAATGCACAAGCCGAGGATCGACCCAATCCCCCCTACATGCT
* * * * * *
23843772 ATCGATCCTGCTACTGGTCCTGCTACCGTAACCCTCGGTCCGGTCTGATCTTTGACTAGGAAAGA
456 ATCGATCCTGCTACTGGTCCTACTACCATAACCCTCGATCCGATCCGATCTTAGACTAGGAAAGA
* * *
23843837 ACTTCGGATGCTTAGACATGGAATAAACTCT
521 ACTCCAGATGCCTAGACATGGAATAAACTCT
* **
23843868 GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGATCGGAGAGTTAGAATACG
1 GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACTGATCGGAGAGGCAGAATACG
* * *
23843933 TAAGTCGAGGA-TGACCCGGTCCCCTTCTACGTGCTGTCGGTCCCGCTACCACAACCCTCGATCA
66 TAAGCCGAGGATTGACCCGATCCCCCTCTACGTGCTGTCGGTCCCGCTACCACAACCCTCGATCA
* *
23843997 GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCACT-AAACGGGCGTGCGG
131 GACTAGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCA-TGAAACGGGCGTACGG
* * * * * * * *
23844061 GCGCTCAGTCGGTCGGAGAGGCAGAATGCATAAGCCGGGGATCGACTCGGTCCCCCTTGCGTGCT
195 GCGCTCAATCGGT-AGAGAGGCAAAATGCACAAGCCGGGGACCGACCCGATCCCCCCTGCGTGCT
* * * *
23844126 GCTGATCCTACTATCGTAACCCTCGATCT-GATTAGATCTAAGACTGGGAATGAACTCCGTATGC
259 ACCGATCCTACTATCGCAACCCTCGATCTAG-TTAGATCTAAGACTAGGAATGAACTCCGTATGC
*
23844190 TTAGACTGGGGATGAACTCCGTATCCCTAAGTCAA-CCAGCGAAACAAGCGTGCGGGCACTCAGC
323 TTAGACTGGGGATGAAATCCGTATCCCTAAGTCAAGCCA-CGAAACAAGCGTGCGGGCACTCAGC
* * * *
23844254 CCACCGGAGAGGCCGGCCGGAGACGCAAAATGCGCAAGCTG-GGAGTCGACCCAGTCCCCCCTAC
387 CCACCGGAGAGGCCGACCGGAGACGCAAAATGCACAAGCCGAGGA-TCGACCCAATCCCCCCTAC
* * * * * *
23844318 GTGCTGTCGATCCTGCTGCTGGTCCTACTGCCATAACCCTTGATCCTATCCGATCTTAGACTAGG
451 ATGCTATCGATCCTGCTACTGGTCCTACTACCATAACCCTCGATCCGATCCGATCTTAGACTAGG
* *
23844383 AATGAACTCCATATGCCTAGACATGGAATAAACTCT
516 AAAGAACTCCAGATGCCTAGACATGGAATAAACTCT
** * * * *
23844419 GTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAACTGGTTGCAGAGGCAGAATACG
1 GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACTGATCGGAGAGGCAGAATACG
23844484 TA
66 TA
23844486 TATCGGGGAT
Statistics
Matches: 519, Mismatches: 94, Indels: 10
0.83 0.15 0.02
Matches are distributed among these distances:
550 119 0.23
551 400 0.77
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (551 bp):
GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACTGATCGGAGAGGCAGAATACG
TAAGCCGAGGATTGACCCGATCCCCCTCTACGTGCTGTCGGTCCCGCTACCACAACCCTCGATCA
GACTAGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGGGCGTACGGG
CGCTCAATCGGTAGAGAGGCAAAATGCACAAGCCGGGGACCGACCCGATCCCCCCTGCGTGCTAC
CGATCCTACTATCGCAACCCTCGATCTAGTTAGATCTAAGACTAGGAATGAACTCCGTATGCTTA
GACTGGGGATGAAATCCGTATCCCTAAGTCAAGCCACGAAACAAGCGTGCGGGCACTCAGCCCAC
CGGAGAGGCCGACCGGAGACGCAAAATGCACAAGCCGAGGATCGACCCAATCCCCCCTACATGCT
ATCGATCCTGCTACTGGTCCTACTACCATAACCCTCGATCCGATCCGATCTTAGACTAGGAAAGA
ACTCCAGATGCCTAGACATGGAATAAACTCT
Found at i:23844595 original size:551 final size:550
Alignment explanation
Indices: 23843317--23844681 Score: 1391
Period size: 551 Copynumber: 2.5 Consensus size: 550
23843307 AATGAACTTC
** * * * * * *
23843317 GTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAACTGACCGGAGAGGCAGAATTCA
1 GTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAACCGATCGCAGAGGCAGAATACG
* * * * * * * * * * * *
23843382 CAGGCCGGGGATTGGCCCGATCCCCCTCTACGTGCTGTTGGTCCCGCTGCCACAACCCTCGGTCC
66 TAAGTCGAGGA-TGACCCGATCCCCCTCTACATGCTGTCGATCCCGCTACCACAACCCACGATCA
* * *
23843447 GGCTAGG-GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGTGTACGG
130 GACT-GGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT-AAACGGGCGTACGG
* * * * * * * * *
23843511 GTGCTCAATCGGT-AGAGAGGTAAAATGCACATGCCGGGGACCGGCCCGATCCCCCCTGCGTGCT
193 GTGCTCAGTCGGTCGGAGAGGCAAAATGCACAAGCCGGGGATCGACTCGGTCCCCCTTGCGTGCT
* * * * * *
23843575 ACCGATCCTGCTGTCGCAACCCTCGGTCTAGTTTGATCTTAGACTAGGAATGAACTTCGTATGCT
258 ACCGATCCTACTATCGCAACCCTCGATCTAGTTAGATCTAAGACTAGGAATGAACTCCGTATGCT
* * * * * * *
23843640 TAGATTGGGGATGAAATCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGCGGGCGCTTAGTCG
323 TAGACTGGGGATGAAATCCGTATCCCTAAGTCAAGCCACGAAACAAGCGTGCGGGCACTCAGCCC
*** * * * * * **
23843705 GTTGGAGAGGCCGACTGGAGAGGCAGAATGCACAAGCCGATGATCGACCCAATCCCCCGTGTATG
388 ACCGGAGAGGCCGACCGGAGACGCAAAATGCACAAGCCGAGGATCGACCCAATCCCCCCTACATG
* * * * * *
23843770 CTATCGATCCTGCTACTGGTCCTGCTACCGTAACCCTCGGTCCGGTCTGATCTTTGACTAGGAAA
453 CTATCGATCCTGCTACTGGTCCTACTACCATAACCCTCGATCCGATCCGATCTTAGACTAGGAAA
* * *
23843835 GAACTTCGGATGCTTAGACATGGAATAAACTCT
518 GAACTCCAGATGCCTAGACATGGAATAAACTCT
** * **
23843868 GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGATCGGAGAGTTAGAATACG
1 GTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAACCGATCGCAGAGGCAGAATACG
* * * * *
23843933 TAAGTCGAGGATGACCCGGTCCCCTTCTACGTGCTGTCGGTCCCGCTACCACAACCCTCGATCAG
66 TAAGTCGAGGATGACCCGATCCCCCTCTACATGCTGTCGATCCCGCTACCACAACCCACGATCAG
* * * *
23843998 ACTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCACTAAACGGGCGTGCGGGC
131 ACTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-TAAACGGGCGTACGGGT
* * *
23844063 GCTCAGTCGGTCGGAGAGGCAGAATGCATAAGCCGGGGATCGACTCGGTCCCCCTTGCGTGCTGC
195 GCTCAGTCGGTCGGAGAGGCAAAATGCACAAGCCGGGGATCGACTCGGTCCCCCTTGCGTGCTAC
* * *
23844128 TGATCCTACTATCGTAACCCTCGATCT-GATTAGATCTAAGACTGGGAATGAACTCCGTATGCTT
260 CGATCCTACTATCGCAACCCTCGATCTAG-TTAGATCTAAGACTAGGAATGAACTCCGTATGCTT
*
23844192 AGACTGGGGATGAACTCCGTATCCCTAAGTCAA-CCAGCGAAACAAGCGTGCGGGCACTCAGCCC
324 AGACTGGGGATGAAATCCGTATCCCTAAGTCAAGCCA-CGAAACAAGCGTGCGGGCACTCAGCCC
* * * * *
23844256 ACCGGAGAGGCCGGCCGGAGACGCAAAATGCGCAAGCTG-GGAGTCGACCCAGTCCCCCCTACGT
388 ACCGGAGAGGCCGACCGGAGACGCAAAATGCACAAGCCGAGGA-TCGACCCAATCCCCCCTACAT
* * * * *
23844320 GCTGTCGATCCTGCTGCTGGTCCTACTGCCATAACCCTTGATCCTATCCGATCTTAGACTAGGAA
452 GCTATCGATCCTGCTACTGGTCCTACTACCATAACCCTCGATCCGATCCGATCTTAGACTAGGAA
* *
23844385 TGAACTCCATATGCCTAGACATGGAATAAACTCT
517 AGAACTCCAGATGCCTAGACATGGAATAAACTCT
* * * *
23844419 GTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAACTGGTTGCAGAGGCAGAATACG
1 GTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAACCGATCGCAGAGGCAGAATACG
* * * * * ** *
23844484 TATA-TCGGGGATAGGCTCGATCCCCCT-TGCATGCTGTCGATCCTGCTACCGTAACCCACGGTT
66 TA-AGTCGAGGAT-GACCCGATCCCCCTCTACATGCTGTCGATCCCGCTACCACAACCCAC-GAT
** * * * * * * * *
23844547 TGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAATGAGCGTTC
128 CAGACTGGAGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCC-ATAAACGGGCGTAC
* * * * * * * *
23844610 GGGTGTTGAGTCGGTCGAAGAGGCATAATGCGCAAGTCGGGGATC-AGTTCGGTCCCCCTCTACG
191 GGGTGCTCAGTCGGTCGGAGAGGCAAAATGCACAAGCCGGGGATCGA-CTCGGTCCCCCT-TGCG
23844674 TGCTACCG
254 TGCTACCG
23844682 GTCCCGCTGC
Statistics
Matches: 671, Mismatches: 130, Indels: 25
0.81 0.16 0.03
Matches are distributed among these distances:
549 2 0.00
550 119 0.18
551 524 0.78
552 26 0.04
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (550 bp):
GTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAACCGATCGCAGAGGCAGAATACG
TAAGTCGAGGATGACCCGATCCCCCTCTACATGCTGTCGATCCCGCTACCACAACCCACGATCAG
ACTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAACGGGCGTACGGGTG
CTCAGTCGGTCGGAGAGGCAAAATGCACAAGCCGGGGATCGACTCGGTCCCCCTTGCGTGCTACC
GATCCTACTATCGCAACCCTCGATCTAGTTAGATCTAAGACTAGGAATGAACTCCGTATGCTTAG
ACTGGGGATGAAATCCGTATCCCTAAGTCAAGCCACGAAACAAGCGTGCGGGCACTCAGCCCACC
GGAGAGGCCGACCGGAGACGCAAAATGCACAAGCCGAGGATCGACCCAATCCCCCCTACATGCTA
TCGATCCTGCTACTGGTCCTACTACCATAACCCTCGATCCGATCCGATCTTAGACTAGGAAAGAA
CTCCAGATGCCTAGACATGGAATAAACTCT
Found at i:23844752 original size:159 final size:158
Alignment explanation
Indices: 23844556--23844899 Score: 367
Period size: 159 Copynumber: 2.2 Consensus size: 158
23844546 TTGGTCTGAT
* * * * *
23844556 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-AGAAA-TGAGCGTTCGGGTG-TTG
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACA-AAACAGA-CGTGCGGGCGCTT-
* * * * * *
23844618 AGTCGGTCGAAGAGGCATAATGCGCAAGTCGGGGATCAGT-TCGGTCCCCCTCTACGTGCTACCG
63 AGTCGATCGAAGAGGCAAAATGCACAAGCCGGGGATCA-TCCCGGTACCCC-CTACGTGCTACCG
*
23844682 GTCCCGCTGCCAGAACCCTCAGTCCGGTTGGGG
126 ATCCCGCTGCCAGAACCCTCAGTCCGGTTGGGG
23844715 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGACGTGCGGGCGCTTAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGACGTGCGGGCGCTTAG
* *
23844779 TCGATCGGAGAGGCAAAATGCACAAGCCGGGGATCATCCCGGTACCCCCTGCGTGCTACCGATCC
65 TCGATCGAAGAGGCAAAATGCACAAGCCGGGGATCATCCCGGTACCCCCTACGTGCTACCGATCC
* * * * ** **
23844844 TGCTGCC-GCAACCATCGGTCCCGTCCGAT
130 CGCTGCCAG-AACCCTCAGTCCGGTTGGGG
* *
23844873 CTTAGATTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCCTATGC
23844900 TTAGATTGGG
Statistics
Matches: 154, Mismatches: 24, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
157 2 0.01
158 58 0.38
159 88 0.57
160 6 0.04
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGACGTGCGGGCGCTTAGT
CGATCGAAGAGGCAAAATGCACAAGCCGGGGATCATCCCGGTACCCCCTACGTGCTACCGATCCC
GCTGCCAGAACCCTCAGTCCGGTTGGGG
Found at i:23844924 original size:26 final size:26
Alignment explanation
Indices: 23844873--23844925 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23844863 CCCGTCCGAT
*
23844873 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCATATG
* * *
23844899 CTTAGATTGGGGATGAAGTTCATATG
1 CTTAGATTGGGAATGAACTCCATATG
23844925 C
1 C
23844926 CGAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:23845284 original size:26 final size:26
Alignment explanation
Indices: 23845255--23845305 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23845245 CGGTCTGATC
*
23845255 TTAGAC-TGGGAATGAACTCTGTATGA
1 TTAGACAT-GGAATGAACTCCGTATGA
23845281 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
23845306 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGA
Found at i:23845404 original size:381 final size:381
Alignment explanation
Indices: 23844860--23845736 Score: 1023
Period size: 381 Copynumber: 2.3 Consensus size: 381
23844850 CGCAACCATC
* * * * * * *
23844860 GGTCCCGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGA-TTGGGGATGAAGTTCATAT
1 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTAT
* * * * * * * * * *
23844924 GCCGAAGTCAACCCACGAAACGAACGTGTGGCCGTTCAG-CTGACCGAAGAGGTCAGTCGGAGAG
65 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTCAGCCGGTCAGAAGAGGTCAGTCGAAAAG
* * * * *
23844988 GCAAAATGCGCAAGCCGGGGATCAGCCTAGTCCCCCTCTGCGTGCTATCGAT-CTCGCTGTCGGT
130 GCAAAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTACCGATCCT-GCTGCCAGT
* * *
23845052 TCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGGATGAACTCCGTATGCCTAAGCC
194 CCTGCTACCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
*** *
23845117 AACCCATGAAACAAGTGTGCAGGCACTCAGTCGGTTGGACAAG-CAGAATGCGTAAGCTAG-GGA
259 AACCCATGAAACAAGTGTGCAGGCACTCAGTCGGCCCGA-AAGACAGAATGCGCAAGC-AGAGGA
* * * *** * * *
23845180 TTGGC-CTGATCCCCCCCTGTGTGTTATCGATCCTGCTGCTGGTCTTGCTGCTGTAACCCCA
322 TCGACTCAG-T-CCCCCCTACATGTTACCGATCCTACTGCTGGTCTTGCTGCTGCAACCCCA
* * *
23845241 GGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGATTAGACATGGAATGAACTCCGTATG
1 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATG
* **
23845306 CCTAAGTCAACTCACGAAACGAGCGTGCGGGCATTCAGCCGGTCAG-AGAGGTTGGTCGAAAAGG
66 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTCAGCCGGTCAGAAGAGGTCAGTCGAAAAGG
* * **
23845370 CAAAATGCGCAAGCCAGGGATTAGCCCGGTCCCCCTCTTTGTGCTACCGATCCTGCTGCCAGTCC
131 CAAAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCAGTCC
* * *
23845435 TGCTGCCACAACCTTTGGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
196 TGCTACCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
23845500 CCCATGAAACGAGTGTGCGGGCACTCAGTCGGCCCGAGAGATAGAATGCGCAAGCCGAGGATCGA
261 CCCATGAAACAAGTGTGCAGGCACTCAGTCGGCCCGAAAGACAGAATGCGCAAGCAGAGGATCGA
* * ***
23845565 CTCAGTCCCTCCTACATGTTACCGATCCTACTGCTGGTCTTGCTGTTGCAACCTTT
326 CTCAGTCCCCCCTACATGTTACCGATCCTACTGCTGGTCTTGCTGCTGCAACCCCA
* * * *
23845621 GATCCGATCCGATCTTAGACTGGGAATGAACACCGTATGCTTAGACATTGAATGAACTCCGTATG
1 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATG
* * * *
23845686 CCTAAGCCAACCCACGAAAAGTGCGTGCGGGCACTCAGCCGGTC-GAAGAGG
66 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTCAGCCGGTCAGAAGAGG
23845737 CAGAATGCAC
Statistics
Matches: 416, Mismatches: 73, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
379 1 0.00
380 144 0.35
381 262 0.63
382 9 0.02
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (381 bp):
GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATG
CCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTCAGCCGGTCAGAAGAGGTCAGTCGAAAAGG
CAAAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCAGTCC
TGCTACCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCATGAAACAAGTGTGCAGGCACTCAGTCGGCCCGAAAGACAGAATGCGCAAGCAGAGGATCGA
CTCAGTCCCCCCTACATGTTACCGATCCTACTGCTGGTCTTGCTGCTGCAACCCCA
Found at i:23845915 original size:158 final size:157
Alignment explanation
Indices: 23845670--23846160 Score: 484
Period size: 158 Copynumber: 3.1 Consensus size: 157
23845660 CTTAGACATT
* * * *
23845670 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGTGCGTGCGGGCACTCAGCCGGTCGAAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGTGTGCGGGCACTCAGTCGATCGAAGA
* * * *
23845735 GGCAGAATGCACAAGTCAGGGATCAGCCCAACCCCCCCTGTGTGCTATCGATCCTGCTGTCGTAA
66 GGCAGAATGCGCAAGCCGGGGATCAGCCCAACCCCCCCTGTGTGCTATCGATCCTGCTGTCGCAA
*
23845800 CCCTCAGTCCAGTCCGATCTGAGACTGG
131 CCCTCAGTCC-GTCCGATCTTAGACTGG
* * ** * *
23845828 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGTGCTGAGTCGATCGCAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGTGTGCGGGCACTCAGTCGATCGAAGA
* * *** * * * * * *
23845893 GGCATAATGCGCAAGCCGGGGAT-AGCCCGATCCCCTTTTGTGTGCT-GCCAGTCCCGTTGCCAC
66 GGCAGAATGCGCAAGCCGGGGATCAGCCC-AACCCCCCCTGTGTGCTATCGA-TCCTGCTGTCGC
* * ** * **
23845956 AACCCTCAGTCCGACTGGGGCTTACACACG
129 AACCCTCAGTCCGTC-CGATCTTAGACTGG
* * * * * *
23845986 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCACTCAGTCGACCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGTGTGCGGGCACTCAGTCGATCGAAGA
***** * * *
23846051 GGCAGAATGCGCAAGCCGGGGATCAGCTTGGTCCCCCCTGCGTGCTATCGATCGTACTGTCGCAA
66 GGCAGAATGCGCAAGCCGGGGATCAGCCCAACCCCCCCTGTGTGCTATCGATCCTGCTGTCGCAA
23846116 CCCTC-GATCCGATCCGATCTTAGACTGG
131 CCCTCAG-TCCG-TCCGATCTTAGACTGG
23846144 GAATGAACTCCGTATGC
1 GAATGAACTCCGTATGC
23846161 TTAGACTAGG
Statistics
Matches: 257, Mismatches: 69, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
157 10 0.04
158 241 0.94
159 6 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGTGTGCGGGCACTCAGTCGATCGAAGA
GGCAGAATGCGCAAGCCGGGGATCAGCCCAACCCCCCCTGTGTGCTATCGATCCTGCTGTCGCAA
CCCTCAGTCCGTCCGATCTTAGACTGG
Found at i:23846163 original size:26 final size:26
Alignment explanation
Indices: 23846134--23846186 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23846124 CCGATCCGAT
23846134 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
23846160 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
23846186 C
1 C
23846187 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:23846885 original size:26 final size:26
Alignment explanation
Indices: 23846847--23846899 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23846837 GGCTCAAACT
23846847 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23846873 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23846899 C
1 C
23846900 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23847120 original size:138 final size:138
Alignment explanation
Indices: 23846872--23847120 Score: 374
Period size: 138 Copynumber: 1.8 Consensus size: 138
23846862 AACTCCGTAT
*
23846872 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
* *
23846937 CCGACCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCCAGTCCCACTGCCATAGCCCTCGGTC
66 CCGACCGGAGAAGCAAAATGCGCAAGCTAGGGATCGGCCCAGTCCCACTGCCATAGCCCTCGGTC
23847002 CGGCTGGG
131 CGGCTGGG
** * *
23847010 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
* * * * *
23847075 TCGATCGGAGAAGTAGAATGCGCAAG-TCAGGGATCGGCCCGGTCCC
66 CCGACCGGAGAAGCAAAATGCGCAAGCT-AGGGATCGGCCCAGTCCC
23847121 CCTTATGTGC
Statistics
Matches: 98, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
137 1 0.01
138 97 0.99
ACGTcount: A:0.24, C:0.29, G:0.31, T:0.16
Consensus pattern (138 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
CCGACCGGAGAAGCAAAATGCGCAAGCTAGGGATCGGCCCAGTCCCACTGCCATAGCCCTCGGTC
CGGCTGGG
Found at i:23847490 original size:196 final size:197
Alignment explanation
Indices: 23847148--23847526 Score: 487
Period size: 196 Copynumber: 1.9 Consensus size: 197
23847138 GCTACTGCCG
* * * * *
23847148 CAACCCTCAGTCCGATTTGATCTTAGACTGGGAATGAACTCTGTTTGCTTAGACTGGGGATGAAC
1 CAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACTGGGAATGAAC
* * * ** *
23847213 TCCGTATGCCTAAGTCAACCCACGAAATTAGCGTGTGGGCGCTCAGCCAGCCGGAGAGGCAGAAT
66 TCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCAGGCACTCAGCCAGCCGGAGAGGCAGAAT
** *
23847278 GTGCAAGTCGGGGATCAACCCGATCCCCC-CTACGTGCTGTT-GATCCTGCTGCTAGTTCAGCTA
131 GCACAAGTCAGGGATCAACCCGATCCCCCTCTACGTGCT-TTCGATCCTGCTGCTAGTTCAGCTA
23847341 CGA
195 CGA
* *
23847344 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACAT-GGAATGAA
1 CAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAGAC-TGGGAATGAA
* * *
23847408 CTCTGTATGCCTAAGCCAACCCACAAAATGAGCGTGCAGGCACTCAGCCAGTCGGAGAGGTAGAA
65 CTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCAGGCACTCAGCCAGCCGGAGAGGCAGAA
* ** * *
23847473 TGCATAAG-CTAGGGATCAGTCCGGTCCCCCTCTGCGTGCTTTCGATCCTGCTGC
130 TGCACAAGTC-AGGGATCAACCCGATCCCCCTCTACGTGCTTTCGATCCTGCTGC
23847527 CACAACCCTC
Statistics
Matches: 155, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
195 1 0.01
196 134 0.86
197 20 0.13
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (197 bp):
CAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACTGGGAATGAAC
TCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCAGGCACTCAGCCAGCCGGAGAGGCAGAAT
GCACAAGTCAGGGATCAACCCGATCCCCCTCTACGTGCTTTCGATCCTGCTGCTAGTTCAGCTAC
GA
Found at i:23847760 original size:26 final size:26
Alignment explanation
Indices: 23847708--23847760 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
23847698 CTGGTTAAAT
* *
23847708 CTTAGACTGGTAATGAACTCGGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* * *
23847734 CTTAGACTGGGGATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
23847760 C
1 C
23847761 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:23848112 original size:26 final size:26
Alignment explanation
Indices: 23848075--23848127 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23848065 TTGGTCTGAT
*
23848075 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
23848101 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
23848127 C
1 C
23848128 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:23848627 original size:26 final size:26
Alignment explanation
Indices: 23848576--23848628 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23848566 CCGGTCCGAT
**
23848576 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
23848602 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
23848628 C
1 C
23848629 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23850163 original size:26 final size:26
Alignment explanation
Indices: 23850125--23850177 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23850115 GGCTCAAACT
23850125 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
23850151 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
23850177 C
1 C
23850178 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:23850518 original size:26 final size:27
Alignment explanation
Indices: 23850467--23850520 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
23850457 CTGGTTCGAT
23850467 CTTAGACTGGGAAATGAACTTCGTATG
1 CTTAGACTGGGAAATGAACTTCGTATG
* *
23850494 CTTAGACTGGG-GATGAACTTTGTATG
1 CTTAGACTGGGAAATGAACTTCGTATG
23850520 C
1 C
23850521 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
CTTAGACTGGGAAATGAACTTCGTATG
Found at i:23850704 original size:26 final size:26
Alignment explanation
Indices: 23850666--23850718 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23850656 CCGGTCCAAT
*
23850666 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23850692 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23850718 C
1 C
23850719 CTCAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23850740 original size:198 final size:197
Alignment explanation
Indices: 23850375--23850769 Score: 506
Period size: 198 Copynumber: 2.0 Consensus size: 197
23850365 GGCGCTCAGC
* * * * * *
23850375 CGACCGGAGAGGCAGAATGTGCAAGCTGGGATCGGCCTGGTCCCCCCTGTGTGCTGCCGATCCTG
1 CGACCGGAGAGGCAGAATGCGCAAGCAGGGATCGGCCCGATCCCCCCTATGTGCTGCCGATCCTA
* * * *
23850440 CTACCGTAACCCTCAGTCTGGTTCGATCTTAGACTGGGAAATGAACTTCGTATGCTTAGACTGGG
66 CTACCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAAATGAACTTCGTATGCTTAGACTGGG
* ** * *** * *
23850505 GATGAACTTTGTATGCCTAAGTCAACCCGTGAAACGAGCGCGCAGGCGCTCAGTCGGTGGGAGAG
131 AATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGCGCAGGCGCTCAGCCGGTCGGAGAG
23850570 GT
196 GT
* * *
23850572 CGACTGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCCCTATGTGCTGTCGATCC
1 CGACCGGAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCGAT-CCCCCCTATGTGCTGCCGATCC
* *
23850637 TACTGCTGCAACCCTCAGTCCGGTCCAATCTTAGACTGGG-AATGAACTTCGTATGCTTAGACAT
64 TACTACCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAAATGAACTTCGTATGCTTAGAC-T
* * *
23850701 -GGAATGAACTCCGTATGCCTCAGCCAACCCACAAAACGAGTGTGCAGGCGCTCAGCCGGTCGGA
128 GGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGCGCAGGCGCTCAGCCGGTCGGA
23850765 GAGGT
193 GAGGT
23850770 AAAATGCGTA
Statistics
Matches: 168, Mismatches: 27, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
197 22 0.13
198 92 0.55
199 54 0.32
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.21
Consensus pattern (197 bp):
CGACCGGAGAGGCAGAATGCGCAAGCAGGGATCGGCCCGATCCCCCCTATGTGCTGCCGATCCTA
CTACCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAAATGAACTTCGTATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGCGCAGGCGCTCAGCCGGTCGGAGAG
GT
Found at i:23851040 original size:159 final size:159
Alignment explanation
Indices: 23850691--23851193 Score: 473
Period size: 158 Copynumber: 3.2 Consensus size: 159
23850681 AACTTCGTAT
* * * * *
23850691 GCTTAGACATGGAATGAACTCCGTATGCCTCAGCCAACCCACAAAACGAGTGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGTGTGCGGGCACTCAG
* * * * * *
23850756 CCGGTCGGAGAGGTAAAATGCGTAAGCCAGGGA-CCGACCTGGTCCCCCCTACGTGCTATCGATC
66 CCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGACCTGGTCCCCCCTACGTGCTACCGATC
* *
23850820 CTGCTACTATAACCCTCGGTCCGGTCTGA
131 CTGCTACCACAACCCTCGGTCCGGTCTGA
* * ** * * *
23850849 TCTTAGACAGGGAATGAACTCCGTATGCCTAAGTTAACCTACGAAACGAGTGTTCGGGCACTAAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGTGTGCGGGCACTCAG
* * * *
23850914 CCGATCGGAGAGGCATAATGCACAAGCCGGGGATCAG-CCTGGTCCCCCTCTGCGTGCTGCCGGA
66 CCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGACCTGGTCCCCC-CTACGTGCTACC-GA
* * *
23850978 -CAC-GCTGCCACAACCCTCGGTCTGG-CTGGG
129 TC-CTGCTACCACAACCCTCGGTCCGGTCT-GA
* * * * *
23851008 GCTTAGACATGGAATGAACTCCCTGTGCCTAAGCCAACCAATGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGTGTGCGGGCACTCAG
* * ** * *
23851073 CCGA-CTGGAGAGGCAGAATACGCAAGCCGGGGATC-GACCAAGTCCTCCCTACGTGCTGCCGAT
66 CCGATC-GGAGAGGCAAAATGCGCAAGCCGGGGATCAGACCTGGTCCCCCCTACGTGCTACCGAT
* ** * **
23851136 CCTACTGTCACAACCCTCGGTCTGGTCCCA
130 CCTGCTACCACAACCCTCGGTCCGGTCTGA
* * *
23851166 TCTTAGA-TTGTGAATGAACTCTGTATGC
1 GCTTAGACATG-GAATGAACTCCGTATGC
23851194 TTAGACTGAG
Statistics
Matches: 279, Mismatches: 55, Indels: 22
0.78 0.15 0.06
Matches are distributed among these distances:
157 5 0.02
158 148 0.53
159 123 0.44
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGTGTGCGGGCACTCAG
CCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGACCTGGTCCCCCCTACGTGCTACCGATC
CTGCTACCACAACCCTCGGTCCGGTCTGA
Found at i:23852051 original size:158 final size:157
Alignment explanation
Indices: 23851573--23852070 Score: 466
Period size: 158 Copynumber: 3.2 Consensus size: 157
23851563 ACTCCATATG
* * * *
23851573 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGTGTGCGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
23851637 CCGACCAGAGAGGTAGAATGCGCAAGCAGGGGATCGGCCCAGTCCCTCCTGCGTGCTGTCGATCC
65 CCGACCGGAGAGGCAGAAT-CGCATGCCGGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCC
* * ** * *
23851702 TACTGTCGCAACCCTCAATCTGATCCTAT
129 TGCTGCCGCAACCCTCGGTCCGATCCGAT
* * * * * * *
23851731 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAGCAAGCGTGTGGGTGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
23851796 TGACCGGAGAGGCATAAT-GCATAAGCCGAGGATCGACCCGATCCC-CTCTGCATGCTGTCGGTC
66 CGACCGGAGAGGCAGAATCGCAT--GCCGGGGATCGGCCCGGTCCCTC-CTGCGTGCTGTCGATC
* * * * * **
23851859 CCGCTGCCACAACCCTCGGTTCG-GCTGGGG
128 CTGCTGCCGCAACCCTCGGTCCGATC-CGAT
* * *
23851889 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * *
23851953 CCGGTCGGAGAGGCAGAATCCGCATGCCGGGGATCGGCTCGGTCCCTCCTACGTGCTGTCGATCC
65 CCGACCGGAGAGGCAGAAT-CGCATGCCGGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCC
* * * *
23852018 TGCTACCGCAAACTTTGGTCCGATCCGAT
129 TGCTGCCGCAACCCTCGGTCCGATCCGAT
23852047 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
23852071 AGCTTAGACT
Statistics
Matches: 260, Mismatches: 69, Indels: 22
0.74 0.20 0.06
Matches are distributed among these distances:
156 3 0.01
157 4 0.02
158 246 0.95
159 3 0.01
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATCGCATGCCGGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCCTG
CTGCCGCAACCCTCGGTCCGATCCGAT
Found at i:23852076 original size:26 final size:26
Alignment explanation
Indices: 23852047--23852096 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
23852037 CCGATCCGAT
23852047 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
*
23852073 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
23852097 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:23853152 original size:26 final size:26
Alignment explanation
Indices: 23853123--23853175 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23853113 CCGATTAGAT
23853123 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
23853149 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
23853175 C
1 C
23853176 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:23853863 original size:26 final size:26
Alignment explanation
Indices: 23853834--23853886 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23853824 CCGATCTGAT
23853834 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
23853860 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
23853886 C
1 C
23853887 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:23854231 original size:26 final size:26
Alignment explanation
Indices: 23854202--23854253 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23854192 CCGGTCTGAT
23854202 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
23854228 CTTAGACATGGAATGAGCTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23854254 ACTAAGCCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23854582 original size:868 final size:871
Alignment explanation
Indices: 23853253--23855105 Score: 2205
Period size: 868 Copynumber: 2.1 Consensus size: 871
23853243 ATACGTAAGC
* ** * * * * *
23853253 CGGGGATAGGCCCCATCCCCCCCTGCATGCTACCTATCCTACTGCTGGTCCTGCTGTCGTAACCC
1 CGGGGATCGGCCAGATCCCCTCC-GCATGCTGCCAATCCTGCTGCTGGTCCTGCT-ACGTAACCC
* * * *
23853318 TCTGTCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGGACTCCGTA
64 TCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGGACTCCGTA
* * * * ** **
23853383 TGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAATCGACCAGAAAGGTAGAATGTGCAA
129 TGACTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAAGCGACCAGAAAGCCAGAATGCACAA
* * * **
23853448 GCCGGGGACTGGCTCGGTCCCCCCTGCATGCTGTCGATCCTGCTACCACAACCCTCGTTTCTGTC
194 GCCGGGGACTGGATCGGTCCCCCCTGCATACTGTCGATCCTGCTACCACAACCCTCGTGTCCATC
* * * * *
23853513 TGATCTTAGACTGGGAATGAATTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCAGATGCT
259 TGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGACGCT
*
23853578 GAGCCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCAGCTG
324 GAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCAGCTG
* * * * *
23853643 ATCCCGCTGCCACAACTCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
389 ATCCCACTGCCACAACCCTCGATCCGACTGGAGCTTAGACATGGAATGAACTCCCTATACCTAAG
* *
23853708 CCAACCCATGAAACGGGCGTGCGGGCACTCAGTC-GATCGGAGAGGCAGAATGCCCAAGCCAGGG
454 CCAACCCATGAAACGGGCATGCGGGCACTCAGTCGGCT-GGAGAGGCAGAATGCCCAAGCCAGGG
* * * *
23853772 ATCGGCCTAG-TCACCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGATCTGATCT
518 ATCAGCC-AGATCACCCCTACGTGCTATCGATCCTGCTACCGCAACCCTCGATCCGATCCGATCT
* * * *
23853836 TAGACTGGGAATGAACTCCGTATGCTTAGACT-GAGGATGAACTCCGTATGCCTAAGTCAACCAA
582 TAGACTGGGAATGAACACCATATGCTTAGACTAG-GGATGAACGCCGTATGCCTAACTCAACCAA
* * * * *
23853900 TGAAAAGAACGTGCAGGCGCTCAGCCAGCCGGAGA-G-GC-ATA-ATGCATAAT-TCGAGGATCA
646 TGAAAAGAACGTACAGGCGCTCAACCAGCCGAAGAGGAGCTAAAGACGCATAATGTCGAGGATCA
* * * * * * *
23853960 G-TCTGATCCCCCTCTTCTTACTGTCGATCCCGCTGCCGGTCTTGCTGCCACAACCCTCGGTCCG
711 GCT-TGATCCCCCTCTGCATACTATCGATCCCGCTGCCGGTCCTGCTACCACAAACCTCGGTCCA
*
23854024 ACTGGGGCTTAGACATGGAATGAACTCCGTATTCCTAAGCCAACCCATGAAACGAGCGCACGGGC
775 ACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGCACGGGC
* **
23854089 ACTCAGCCCA-CTGGAGAGGTAGAATGTGCAAGT
840 ACTCAG-CCAGCCGGAGA-GTAGAATGCACAAGT
* *
23854122 CGGGGATCGGCCAGGTCTCCC-CCGACGTGCTGCCAATCCTGCTGCTGGTCCTGCTACAGTAACC
1 CGGGGATCGGCCAGATC-CCCTCCG-CATGCTGCCAATCCTGCTGCTGGTCCTGCTAC-GTAACC
*
23854186 CTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAAT-GAGCTCCG
63 CTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGGA-CTCCG
* * * *
23854250 TATGACTAAGCCCACCCACGAAAAGAGCGTGCGTGTGCTC-AGCAGGCC-GAAGAGCCAGAATGC
127 TATGACTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAAGC-GACCAGAA-AGCCAGAATGC
* ** * * * *
23854313 ATAAGTTGGGGA-TCGGATTGGTCCCCCCTGCGTACTGTCGATCCTGCTGCCGCAACCCTCG-GT
190 ACAAGCCGGGGACT-GGATCGGTCCCCCCTGCATACTGTCGATCCTGCTACCACAACCCTCGTGT
* *
23854376 CCATCTGATCTTAGATTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGG
254 CCATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAG
* * * * * *
23854441 GCGCTGAGCTGGCCGAAGAGGCATAATGCGTAAGCC-GAGGATTGGCCCGATCCCCCTCTGCGTG
319 ACGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCCAG-GGATCGACCCGATCCCCCTCTGCGTG
* * * *
23854505 CTG-TCGGTCTCACTGCCACAACCCTCGGTCCGACTGGAGCTTAGACATGGAATGAACT-CCTAA
383 CAGCT-GATCCCACTGCCACAACCCTCGATCCGACTGGAGCTTAGACATGGAATGAACTCCCT-A
* * *
23854568 TACCTAAGCCAACCCGTGAAACGGGCATGCGGGCTCTCAGTCGGCTGGAGAGGCAGAATGCGCAA
446 TACCTAAGCCAACCCATGAAACGGGCATGCGGGCACTCAGTCGGCTGGAGAGGCAGAATGCCCAA
* * * ** * * ** *
23854633 GCCGGGGATCAGCCCGATCCCCCCTACGTGCTATCGATCCTGCTGTCGTAACCCTCGGTTTGGTC
511 GCCAGGGATCAGCCAGATCACCCCTACGTGCTATCGATCCTGCTACCGCAACCCTCGATCCGATC
23854698 CGATCTTAGACTGGGAATGAACACCATATGCTTAGACTAGGGATGAACGCCGTATGCCTAACTCA
576 CGATCTTAGACTGGGAATGAACACCATATGCTTAGACTAGGGATGAACGCCGTATGCCTAACTCA
* * * * * * *
23854763 ACCCATGAAATGAGCGTACGGGTGCTCAATCGGCCGAAGAGGAGCTAAAGACGCATAATGCGAAG
641 ACCAATGAAAAGAACGTACAGGCGCTCAACCAGCCGAAGAGGAGCTAAAGACGCATAAT-----G
* * * *
23854828 TCGGGGATCAGCTTGGTCCCCCTCTGCATGCTATCGATCCCGCTGCCGGTCCTGCTACCATAAAC
701 TCGAGGATCAGCTTGATCCCCCTCTGCATACTATCGATCCCGCTGCCGGTCCTGCTACCACAAAC
*
23854893 CTCGGTCCAACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAG
766 CTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG
* * * *
23854958 TGTACGGGCCCTCAGTCAGCCGGAGAGTAGAATGCACAAGT
831 CGCACGGGCACTCAGCCAGCCGGAGAGTAGAATGCACAAGT
* * * * ** *
23854999 CGGGGATCGGCCCGATCCCCTTCTGCATGCTGTCAATCCTGCTGCTAGTCCTGCTGTTGCAACCC
1 CGGGGATCGGCCAGATCCCC-TCCGCATGCTGCCAATCCTGCTGCTGGTCCTGCT-ACGTAACCC
* * *
23855064 TAAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
64 TCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
23855106 CTAAGTCAAC
Statistics
Matches: 828, Mismatches: 128, Indels: 48
0.82 0.13 0.05
Matches are distributed among these distances:
867 6 0.01
868 365 0.44
869 202 0.24
870 5 0.01
871 2 0.00
872 8 0.01
876 3 0.00
877 101 0.12
878 135 0.16
879 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (871 bp):
CGGGGATCGGCCAGATCCCCTCCGCATGCTGCCAATCCTGCTGCTGGTCCTGCTACGTAACCCTC
AGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGGACTCCGTATG
ACTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAAGCGACCAGAAAGCCAGAATGCACAAGC
CGGGGACTGGATCGGTCCCCCCTGCATACTGTCGATCCTGCTACCACAACCCTCGTGTCCATCTG
ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGACGCTGA
GCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCAGCTGAT
CCCACTGCCACAACCCTCGATCCGACTGGAGCTTAGACATGGAATGAACTCCCTATACCTAAGCC
AACCCATGAAACGGGCATGCGGGCACTCAGTCGGCTGGAGAGGCAGAATGCCCAAGCCAGGGATC
AGCCAGATCACCCCTACGTGCTATCGATCCTGCTACCGCAACCCTCGATCCGATCCGATCTTAGA
CTGGGAATGAACACCATATGCTTAGACTAGGGATGAACGCCGTATGCCTAACTCAACCAATGAAA
AGAACGTACAGGCGCTCAACCAGCCGAAGAGGAGCTAAAGACGCATAATGTCGAGGATCAGCTTG
ATCCCCCTCTGCATACTATCGATCCCGCTGCCGGTCCTGCTACCACAAACCTCGGTCCAACTGGG
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGCACGGGCACTCAG
CCAGCCGGAGAGTAGAATGCACAAGT
Found at i:23854589 original size:159 final size:157
Alignment explanation
Indices: 23854227--23854691 Score: 370
Period size: 159 Copynumber: 2.9 Consensus size: 157
23854217 AACTCCGTAT
* * * * * * *
23854227 GCTTAGACAT-GGAATGAGCTCCGTATGA-CTAAGCCCACCCACGAAAAGAGCGTGCGTGTGCTC
1 GCTTAGA-ATAGGAATGAACTCCGTAT-ACCTAAGCCAACCCACGAAACGAGCATACGGGCGCTC
* ** ** * * *** * *
23854290 AG-CAGGCCGAAGAGCCAGAATGCATAAGTTGGGGATCGGATTGGTCCCCCCTGCGTACTGTCGA
64 AGTC-GGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGCTGTCGA
* *
23854354 TCCTGCTGCCGCAACCCTCGGTCCATCTGA
128 TCCTACTGCCACAACCCTCGGTCCATCTGA
* * * * * *
23854384 TCTTAGATTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAG
1 GCTTAGAATAGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
* * ** *
23854449 -CTGGCCGAAGAGGCATAATGCGTAAGCCGAGGATTGGCCCGATCCCCCTCTGCGTGCTGTCGGT
66 TC-GGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCC-CTGCGTGCTGTCGAT
23854513 -CTCACTGCCACAACCCTCGGTCCGA-CTGGA
129 CCT-ACTGCCACAACCCTCGGTCC-ATCT-GA
** * * *
23854543 GCTTAGACAT-GGAATGAACTCC-TAATACCTAAGCCAACCCGTGAAACGGGCATGCGGGCTCTC
1 GCTTAGA-ATAGGAATGAACTCCGT-ATACCTAAGCCAACCCACGAAACGAGCATACGGGCGCTC
* * * * *
23854606 AGTCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTATCGAT
64 AGTCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGCTGTCGAT
* * **
23854671 CCTGCTGTCGTAACCCTCGGT
129 CCTACTGCCACAACCCTCGGT
23854692 TTGGTCCGAT
Statistics
Matches: 246, Mismatches: 52, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 89 0.36
158 60 0.24
159 94 0.38
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGAATAGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
TCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCC
TACTGCCACAACCCTCGGTCCATCTGA
Found at i:23854743 original size:26 final size:26
Alignment explanation
Indices: 23854702--23854754 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23854692 TTGGTCCGAT
23854702 CTTAGACTGGGAATGAACACCATATG
1 CTTAGACTGGGAATGAACACCATATG
* *
23854728 CTTAGACTAGGG-ATGAACGCCGTATG
1 CTTAGACT-GGGAATGAACACCATATG
23854754 C
1 C
23854755 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:23855806 original size:26 final size:26
Alignment explanation
Indices: 23855776--23855828 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23855766 GGCTCAAACT
*
23855776 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
23855802 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23855828 C
1 C
23855829 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23856685 original size:26 final size:26
Alignment explanation
Indices: 23856644--23856696 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23856634 TCGGTCCAAT
23856644 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
23856670 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
23856696 C
1 C
23856697 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:23857414 original size:159 final size:156
Alignment explanation
Indices: 23857151--23857653 Score: 477
Period size: 159 Copynumber: 3.2 Consensus size: 156
23857141 CTGACTGGGG
*
23857151 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAATG-GTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAA-GCGTGCGGGCGCTCAG
* * ** *
23857215 TCGACCGGAGAGGCAGAATGCGTAAGCC-AGGGATTAGCCCGGTCCCCTCCTACATGCTGTCTAT
65 CCGACCGGAGAGGC-GAATGCGCAAGCCGA-GGATCGGCCCGGTCCCCTCCTGCATGCTGTC-AT
* *
23857279 CCTGCTACTGCAACCCTCAGTCCGATCCGAT
127 CCTACTACT-CAACCCTCGGTCCGATCCGAT
* * * *
23857310 CTTAGAC-TGAGAAT-AAGCTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTGTGGGCGCTAA
1 CTTAGACATG-GAATGAA-CTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCA
* * * * *
23857373 GCCGGCCAGAGAGGCGTAATGCGCAAGCCGAGGATCGGCCCGATCCCCTTCTGCTTGCTGTCAGT
64 GCCGACCGGAGAGGCG-AATGCGCAAGCCGAGGATCGGCCCGGTCCCCTCCTGCATGCTGTCA-T
* * * **
23857438 CCCAC-AGCCACAACCCTCGGTCCGA-CTGGGG
127 CCTACTA--CTCAACCCTCGGTCCGATC-CGAT
* *
23857469 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* ** * * * * *
23857534 CGACCGGAGAGGTAGAATGCGCAAGTTGGGGATCGACCCAGTCCCC-CCTGCGTGCTATCGATCC
66 CGACCGGAGAGG-CGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCTCCTGCATGCTGTC-ATCC
23857598 TACTA-TCATAACCCTCGGT-CGAGTCCGAT
129 TACTACTC--AACCCTCGGTCCGA-TCCGAT
*
23857627 CTTAGAC-TGGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
23857654 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 47, Indels: 39
0.76 0.13 0.11
Matches are distributed among these distances:
156 1 0.00
157 4 0.01
158 58 0.21
159 208 0.75
160 7 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCTCCTGCATGCTGTCATCCTA
CTACTCAACCCTCGGTCCGATCCGAT
Found at i:23857663 original size:26 final size:26
Alignment explanation
Indices: 23857627--23857679 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23857617 CGAGTCCGAT
*
23857627 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23857653 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23857679 C
1 C
23857680 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23858162 original size:354 final size:341
Alignment explanation
Indices: 23857310--23858582 Score: 1030
Period size: 355 Copynumber: 3.6 Consensus size: 341
23857300 CCGATCCGAT
* *
23857310 CTTAGACTGAGAAT-AAGCTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTGTGGGCGCT-AA
1 CTTAGACTG-GAATGAA-CTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGTGGGCGCTCAA
* * *
23857373 GCCGGCCAGAGAGGC-GTAATGCGCAAGCCGAGGATCGGCCCGAT-CCCCTTCTGCTTGCTGTC-
64 -CCGACCAGAGAGGCAG-AATGCGCAAGCCG-GGATCGGCCCGATCCCCCTTCTGCGTGCTATCG
** *
23857435 AGTCCCAC-AGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
126 A-TCCTGCTA-CCACAACCCTCGGTCCG-GTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* * * ** * *
23857499 AGCCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGTTGGG
188 AGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAAAGAGGTAGAATGCACAAGTCGGG
* * * *
23857564 GATCGACCCAGTCCCCCCTGCGTGCTATCGATCCTACTATCATAACCCTCGGTCGAGTCCGATCT
253 GATCGACCCAGTCCCCCCTGCGTGCTACCAATCCTACTATCAGAACCCTCGGTCGAGCCCGATCT
** *
23857629 TAGACTGGGAATGAACTTCGTATG
318 TAGACTAAGAATGAACTCCGTATG
* * * * *
23857653 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAA-CGTGTGGGTGGTCAG
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA-CAAGCGTGTGGGCGCTCAA
* * * *
23857717 CCGACTAGAGAGGCATAATGCGCAAGCCGGGGATCAGCCAGATCCCCTTCTGCATGCTGTCGATC
64 CCGACCAGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGATCCCC--CT---T-CTG-CG-T-
* * * * * * *
23857782 CCGCTACCGGTCCTGCTGCCACAACCCTTGGTCCGGTTGGGCTTAGACATGGAATGAACTTCGTA
119 --GCTATCGATCCTGCTACCACAACCCTCGGTCCGGTGGGGCTTAGACATGGAATGAACTCCCTA
*
23857847 TGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACC-AGCCAAAGAGGTAGAATGCACA
182 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGA-CCAAAGAGGTAGAATGCACA
*
23857911 AGTCGGGGATC-AGCCCAGTCCCCCCCTGCGTGCTACCAATCCTGCTGGTGGTCTTATTGTCAGA
246 AGTCGGGGATCGA-CCCAGT-CCCCCCTGCGTGCTACCAAT-C--C---T--AC-TA---TCAGA
*
23857975 ACCCTCTGTCTG-GCCCGATCTTAGACTAAGAATGAACTCCGTATG
297 ACCCTCGGTC-GAGCCCGATCTTAGACTAAGAATGAACTCCGTATG
* * *
23858020 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCGGGCGCTCAAC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGTGGGCGCTCAAC
* * *
23858085 CGACC-GAAGGGGCAGAATGCGCAAGCCGGGATTGGCCCGGTCCCCCTT-TGCGTGCTATCGATC
65 CGACCAG-AGAGGCAGAATGCGCAAGCCGGGATCGGCCCGATCCCCCTTCTGCGTGCTATCGATC
* * * * *
23858148 TTGCTACAACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAACCA
129 CTGCTACCACAACCCTCGGTCCGG-TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * ** * ** *
23858213 ACCCACGAAACGAGCGTACGGGCACTCAGCCTACCGGAGAGGCAGAATGCGTAAGCCGGGGATCG
193 ACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAAAGAGGTAGAATGCACAAGTCGGGGATCG
** * * * **** * * **
23858278 GTCCGGTCCCCCCTACATGCTTTGGATCCTACTGTC-GCAACCCTCGATCCG-GTTCGATCTTAG
258 ACCCAGTCCCCCCTGCGTGCTACCAATCCTACTATCAG-AACCCTCGGT-CGAGCCCGATCTTAG
**
23858341 ACTGGGAATGAACTCCGTATG
321 ACTAAGAATGAACTCCGTATG
* * * * ** *
23858362 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAACCGAGCGTACGGGTGCTCAA-
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGTGGGCGCTCAAC
* ** * * *
23858426 CTAGTAGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCTGATCCCCCTTTACGTGCTGTCGATG
65 CGACCA-GAGAGGCAGAATGCGCAAGCCG-GGATCGGCCCGATCCCCC--T---T-CTG-CG-T-
** * * *
23858491 CCGCTGCCGATCCTACTACCACAACCCAT-GGTTCGGTTGGGGCTTAGACATGGAATGAACTCCG
119 --GCTATCGATCCTGCTACCACAACCC-TCGGTCCGG-TGGGGCTTAGACATGGAATGAACTCCC
* *
23858555 TATGCCTAAGCAAACCCACGAAATGAGC
180 TATGCCTAAGCCAACCCACGAAACGAGC
23858583 ATACGGGTGC
Statistics
Matches: 749, Mismatches: 120, Indels: 110
0.77 0.12 0.11
Matches are distributed among these distances:
341 4 0.01
342 113 0.15
343 99 0.13
344 10 0.01
345 2 0.00
346 3 0.00
348 2 0.00
349 1 0.00
350 5 0.01
351 4 0.01
352 2 0.00
353 3 0.00
354 138 0.18
355 212 0.28
356 3 0.00
357 1 0.00
358 3 0.00
359 2 0.00
361 2 0.00
363 1 0.00
364 4 0.01
366 17 0.02
367 116 0.15
368 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (341 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGTGGGCGCTCAACC
GACCAGAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGATCCCCCTTCTGCGTGCTATCGATCCT
GCTACCACAACCCTCGGTCCGGTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGAGCGTGCGGGCGCTCAACCGACCAAAGAGGTAGAATGCACAAGTCGGGGATCGACC
CAGTCCCCCCTGCGTGCTACCAATCCTACTATCAGAACCCTCGGTCGAGCCCGATCTTAGACTAA
GAATGAACTCCGTATG
Found at i:23858319 original size:158 final size:158
Alignment explanation
Indices: 23858019--23858362 Score: 379
Period size: 158 Copynumber: 2.2 Consensus size: 158
23858009 AACTCCGTAT
* * * *
23858019 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACAAGCATACGGGCACTCAA
* * * * * *
23858084 CCGACCGAAGGGGCAGAATGCGCAAGCCGGGATTGGCCCGGTCCCCCTTTGCGTGCTATCGATCT
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGGTCCCCCTCTACATGCTATCGATCC
*
23858149 TGCTACAACAACCCTCGGTTCGGCTGGG
131 TACTACAACAACCCTCGGTTCGGCTGGG
* * * *
23858177 GCTTAGACATGGAATGAACTCCTTATGCCTAAACCAACCCACGAAACGAGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACAAGCATACGGGCACTCAA
* * * * * *
23858242 CCTACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGTCCGGTCCCCC-CTACATGCTTTGGATC
66 CCGACCGAAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGGTCCCCCTCTACATGCTATCGATC
* * * * * * *
23858306 CTACTGTC-GCAACCCTCGATCCGGTTCGA
130 CTACT-ACAACAACCCTCGGTTCGGCTGGG
*
23858335 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
23858363 TTAGACTGGG
Statistics
Matches: 153, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
157 1 0.01
158 134 0.88
159 18 0.12
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACAAGCATACGGGCACTCAA
CCGACCGAAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGGTCCCCCTCTACATGCTATCGATCC
TACTACAACAACCCTCGGTTCGGCTGGG
Found at i:23858365 original size:26 final size:26
Alignment explanation
Indices: 23858336--23858388 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23858326 CCGGTTCGAT
23858336 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23858362 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23858388 C
1 C
23858389 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23858633 original size:355 final size:347
Alignment explanation
Indices: 23857445--23858645 Score: 1142
Period size: 355 Copynumber: 3.4 Consensus size: 347
23857435 AGTCCCACAG
* ** *
23857445 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCT-GGTTCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * * * *
23857510 GAAACAAGCGTGCGGGTGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGTTGGGGATCGACCCAG
65 GAAACGAGCGTACGGGCGCTCAGCCAACCGGAGAGGCAGAATGCACAAGCTGGGGATCGGCCCAG
* * * * *
23857575 TCCCCCCTGCGTGCTATCGATCCTACTATCATAACCCTCGGT-CGAGTCCGATCTTAGACTGGGA
130 TCCCCCCTACATGCTATGGATCCTACTGTC-GAACCCTC-GTCCG-GTCCGATCTTAGACTGGGA
* * *
23857639 ATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAACG
192 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
* * * *
23857704 TGTGGGTGGTCAGCCGACTA-GAGAGGCATAATGCGCAAGCCGGGGATCAGCCAGAT-CCCCTTC
257 TGCGGGTGCTCA-AC-AGTAGGAGAGGCATAATGCGCAAGCC-GGGATCAGCCAGATCCCCCTT-
* * *
23857767 TGCATGCTGTCGATCCCGCTACCGGTCCTGCTG
318 TGCGTGCTGTCGAT-CCGCT-CC-GTCCTACTA
* * *
23857800 CCACAACCCTTGGTCCGGTT-GGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAT
1 CCACAACCC-TGGTTCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * ** * *
23857864 GAAACGAGCGTGCGGGCGCTCAACCAGCCAAAGAGGTAGAATGCACAAG-TCGGGGATCAGCCCA
65 GAAACGAGCGTACGGGCGCTCAGCCAACCGGAGAGGCAGAATGCACAAGCT-GGGGATCGGCCCA
* * * * *
23857928 GTCCCCCCCTGCGTGCTACCAATCCTGCTGGTGG-TCTTATTGTCAGAACCCTCTGTCTGGCCCG
129 GT---CCCC--C---CTA-C-A---TGCT-ATGGATCCTACTGTC-GAACCCTC-GTCCGGTCCG
** * *
23857992 ATCTTAGACTAAGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
178 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAA
* * * * * * * **
23858056 CCCATGAAACAAGCATGCGGGCGCTCAACCG-ACCGAAGGGGCAGAATGCGCAAGCCGGGATTGG
242 CCCATGAAACGAGCGTGCGGGTGCTCAACAGTA--GGAGAGGCATAATGCGCAAGCCGGGATCAG
* * * *
23858120 CCCGGTCCCCCTTTGCGTGCTATCGAT---CT---TGCTAC-A
305 CCAGATCCCCCTTTGCGTGCTGTCGATCCGCTCCGTCCTACTA
* * *
23858156 --ACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAACCAACCCAC
1 CCACAACCCT-GGTTCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * ** * * *
23858219 GAAACGAGCGTACGGGCACTCAGCCTACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGTCCGG
65 GAAACGAGCGTACGGGCGCTCAGCCAACCGGAGAGGCAGAATGCACAAGCTGGGGATCGGCCCAG
* *
23858284 TCCCCCCTACATGCTTTGGATCCTACTGTCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAA
130 TCCCCCCTACATGCTATGGATCCTACTGTCG-AACCCTCG-TCCGGTCCGATCTTAGACTGGGAA
* *
23858349 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAACCGAGCGT
193 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
* * *
23858414 ACGGGTGCTCAACTAGTAGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCTGATCCCCCTTTAC
258 GCGGGTGCTCAAC-AGTAGGAGAGGCATAATGCGCAAGCCG-GGATCAGCCAGATCCCCCTTTGC
23858479 GTGCTGTCGATGCCGCTGCCGATCCTACTA
321 GTGCTGTCGAT-CCGCT-CCG-TCCTACTA
*
23858509 CCACAACCCATGGTTCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCAC
1 CCACAACCC-TGGTTCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * * *
23858574 GAAATGAGCATACGGGTGCTCAGCCAACCGGAGAGGCAAAAT-CTACAAGCTGAGGATCGGCTCG
65 GAAACGAGCGTACGGGCGCTCAGCCAACCGGAGAGGCAGAATGC-ACAAGCTGGGGATCGGCCCA
23858638 GTCCCCCC
129 GTCCCCCC
23858646 CGTGTGCTGT
Statistics
Matches: 684, Mismatches: 116, Indels: 92
0.77 0.13 0.10
Matches are distributed among these distances:
341 6 0.01
342 126 0.18
343 29 0.04
344 1 0.00
345 1 0.00
346 1 0.00
347 5 0.01
350 1 0.00
352 9 0.01
353 3 0.00
354 110 0.16
355 222 0.32
356 2 0.00
357 8 0.01
359 1 0.00
362 4 0.01
363 1 0.00
364 1 0.00
366 23 0.03
367 126 0.18
368 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (347 bp):
CCACAACCCTGGTTCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
AAACGAGCGTACGGGCGCTCAGCCAACCGGAGAGGCAGAATGCACAAGCTGGGGATCGGCCCAGT
CCCCCCTACATGCTATGGATCCTACTGTCGAACCCTCGTCCGGTCCGATCTTAGACTGGGAATGA
ACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG
GGTGCTCAACAGTAGGAGAGGCATAATGCGCAAGCCGGGATCAGCCAGATCCCCCTTTGCGTGCT
GTCGATCCGCTCCGTCCTACTA
Found at i:23858689 original size:709 final size:709
Alignment explanation
Indices: 23857310--23858762 Score: 1772
Period size: 709 Copynumber: 2.0 Consensus size: 709
23857300 CCGATCCGAT
* * * *
23857310 CTTAGAC-TGAGAAT-AAGCTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTGTGGGCGCTAA
1 CTTAGACATG-GAATGAA-CTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTAA
* * *
23857373 GCCGGCCAGAGAGGCGTAATGCGCAAGCCGAGGATCGGCCCGATCCCCTTCTGCTTGCTGTCAGT
64 GCCGACCAGAGAGGCGTAATGCGCAAGCCGAGGATCGGCCCGATCCCCTTCTGCGTGCTATCAGT
* *
23857438 CCCACAGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
129 CCCACAGCAACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACC
* ** * **
23857503 AACCCACGAAACAAGCGTGCGGGTGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGTTGGGGATC
194 AACCCACGAAACAAGCGTACGGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATC
* * * *
23857568 GACCCAGTCCCCCCTGCGTGCTATCGATCCTACTATCATAACCCTCGGTCGAGTCCGATCTTAGA
259 GACCCAGTCCCCCCTACATGCTATCGATCCTACTATCACAACCCTCGATCGAGTCCGATCTTAGA
* *
23857633 CTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAA
324 CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* ** * * *
23857698 TGAACGTGTGGGTGGTCAGCCGACTAGAGAGGCATAATGCGCAAGCCGGGGATCAGCCAGATCCC
389 CGAACGTACGGGTGCTCAGACGACTAGAGAGGCATAATGCGCAAGCCGAGGATCAGCCAGATCCC
* * * * *
23857763 CTTCTGCATGCTGTCGATCCCGCTACCGGTCCTGCTGCCACAACCCTTGGTCCGGTTGGGCTTAG
454 CTTCTACATGCTGTCGATCCCGCTACCGATCCTACTACCACAACCCATGGTCCGGTTGGGCTTAG
* * * * * *
23857828 ACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCAGCC
519 ACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCATACGGGCGCTCAACCAACC
* * * *
23857893 AAAGAGGTAGAATGCACAAGTCGGGGATCAGCCCAGTCCCCCCCTGCGTGCTACCAATCCTGCTG
584 AAAGAGGCAAAATGCACAAGTCGAGGATCAGCCCAGTCCCCCCCTGCGTGCTACCAATCCTGCTA
* * * *
23857958 GTGGTCTTATTGTCAGAACCCTCTG-TCTGGCCCGATCTTAGACTAAGAATGAACTCCGTATG
649 CTGGTCTTACTGTCA-AACCCTC-GATCCGGCCCGATCTTAGACTAAGAATGAACTCCATATG
*
23858020 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCGGGCGCTCAA-
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCT-AAG
* * *
23858084 CCGACC-GAAGGGGCAG-AATGCGCAAGCCG-GGATTGGCCCGGTCCCCCTT-TGCGTGCTATC-
65 CCGACCAG-AGAGGC-GTAATGCGCAAGCCGAGGATCGGCCCGAT-CCCCTTCTGCGTGCTATCA
*** * * *
23858144 GATCTTGCTA-CAACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTA
127 G-TCCCAC-AGCAACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* * *
23858208 AACCAACCCACGAAACGAGCGTACGGGCACTCAGCCTACCGGAGAGGCAGAATGCGTAAGCCGGG
190 AACCAACCCACGAAACAAGCGTACGGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGG
** * * * * * *
23858273 GATCGGTCCGGTCCCCCCTACATGCTTTGGATCCTACTGTCGCAACCCTCGATCCG-GTTCGATC
255 GATCGACCCAGTCCCCCCTACATGCTATCGATCCTACTATCACAACCCTCGAT-CGAGTCCGATC
23858337 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
319 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
* * * * *
23858402 CGAACCGAGCGTACGGGTGCTCA-ACTAGTAGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCT
384 CGAAACGAACGTACGGGTGCTCAGACGACTA-GAGAGGCATAATGCGCAAGCCGAGGATCAGCCA
* * * *
23858466 GATCCCCCTT-TACGTGCTGTCGATGCCGCTGCCGATCCTACTACCACAACCCATGGTTCGGTTG
448 GAT-CCCCTTCTACATGCTGTCGATCCCGCTACCGATCCTACTACCACAACCCATGGTCCGGTT-
* *
23858530 GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAATGAGCATACGGGTGCTC
511 GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCATACGGGCGCTC
* ** * * * * **
23858595 AGCCAACCGGAGAGGCAAAAT-CTACAAG-CTGAGGATCGGCTCGGTCCCCCCC-GTGTGCTGTC
576 AACCAACCAAAGAGGCAAAATGC-ACAAGTC-GAGGATCAGCCCAGTCCCCCCCTGCGTGCTACC
* **
23858657 AATCCTGCTACTGGTCCTGCTACTG-C-AACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAA
639 AATCCTGCTACTGGT-CT--TACTGTCAAACCCTCGATCCGGCCCGATCTTAGACTAAGAATGAA
*
23858720 CTCTATATG
701 CTCCATATG
* *
23858729 CATAGACATGGAATGAACTCCATATGCCTAAGCC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCC
23858763 GGGGATTAGC
Statistics
Matches: 632, Mismatches: 93, Indels: 37
0.83 0.12 0.05
Matches are distributed among these distances:
708 6 0.01
709 428 0.68
710 186 0.29
711 8 0.01
712 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (709 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTAAGC
CGACCAGAGAGGCGTAATGCGCAAGCCGAGGATCGGCCCGATCCCCTTCTGCGTGCTATCAGTCC
CACAGCAACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAA
CCCACGAAACAAGCGTACGGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA
CCCAGTCCCCCCTACATGCTATCGATCCTACTATCACAACCCTCGATCGAGTCCGATCTTAGACT
GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
AACGTACGGGTGCTCAGACGACTAGAGAGGCATAATGCGCAAGCCGAGGATCAGCCAGATCCCCT
TCTACATGCTGTCGATCCCGCTACCGATCCTACTACCACAACCCATGGTCCGGTTGGGCTTAGAC
ATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCATACGGGCGCTCAACCAACCAA
AGAGGCAAAATGCACAAGTCGAGGATCAGCCCAGTCCCCCCCTGCGTGCTACCAATCCTGCTACT
GGTCTTACTGTCAAACCCTCGATCCGGCCCGATCTTAGACTAAGAATGAACTCCATATG
Found at i:23859347 original size:26 final size:26
Alignment explanation
Indices: 23859318--23859370 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23859308 CCGGTCTGAT
23859318 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23859344 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23859370 C
1 C
23859371 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23859724 original size:26 final size:26
Alignment explanation
Indices: 23859686--23859738 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23859676 CCGGTCCGAT
23859686 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
23859712 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCTGTATG
23859738 C
1 C
23859739 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:23860065 original size:26 final size:26
Alignment explanation
Indices: 23860029--23860081 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23860019 CTGATTCGAT
23860029 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23860055 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23860081 C
1 C
23860082 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23860132 original size:343 final size:339
Alignment explanation
Indices: 23859001--23860182 Score: 1023
Period size: 343 Copynumber: 3.4 Consensus size: 339
23858991 CCGATCCGAT
* * * * * *
23859001 CTTAGACTGAGAATGAGCTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCGCT-AAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTACGGGTGCTCAA-
* * * *
23859065 TCGGCCAGAGAGGC-GTAATGCACAAGCCGAGGATCGGCCCGATCCCCCTCTGCTTGTTGCC-AG
65 CCGACCAGAGAGGCAG-AATGCACAAGCCG-GGATCGGCCCGATCCCCCTCTGCGTGCTGCCGA-
** * * * *
23859128 TCCCGCGGCCACAACCCTCGGTCTGACTGGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGC
127 TCTTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * *
23859193 CAACCCATGAAACAAGCGTGCGGGTGCTCAACC-GACCGGAGAGGCAGAATGGGCAAGTTGGGGA
192 CAACCCATGAAACGAGCGTGCGGGTGCTC-ACCTG-CCGGAGAGGCAGAATGCGCAAGTCGAGGA
* * ** *
23859257 TCGACCCGATTCCCCCTGCGTGCTATCGATCCTACTGCCATAACCCTCGGTCCGGTCTGATCTTA
255 TCGACCCGGTCCCCCCTGCGTGCTATCGATCCTACTGCCGCAACCCTC-GTCCGTTC-GATCTTA
23859322 GACTGGGAATGAACTCCGTATG
318 GACTGGGAATGAACTCCGTATG
* * * * * * **
23859344 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGGTACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTACGGGTGCTCAAC
* * * * * *
23859409 CGATCGGAGAGGCATAATGCACAAGCTGGGGATCAGCCAGATCCCCTTCTGCATGCTGTCGATCC
66 CGACCAGAGAGGCAGAATGCACAAGC-CGGGATCGGCCCGATCCCC--CT-C-TGC-GT-G----
* * * *
23859474 CTCTGCCGGTCTTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTTCGTA
120 --CTGCCGATCTTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTA
* * ** * * *
23859539 TGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAACTGGCCAAAGAGGTAGAATACACAA
183 TGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCACCT-GCCGGAGAGGCAGAATGCGCAA
* ** *
23859604 GTC-AGGGATC-AGCCCAGTCCCCCCCTGCGTGCTGCCAATCCTGCTACTGGTCCGGTTGTCAGA
247 GTCGA-GGATCGA-CCCGGT-CCCCCCTGCGTGCTATCGAT-C--CTACT-G-CC----G-C--A
* * *
23859667 ACCCTCTGTCCGGTCCGATCTTAGACTAGGAATGAACTCTGTATG
297 ACCCTC-GTCC-GTTCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
23859712 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGC-CAACCCATGAAACAAGCATGCAGGTGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAA-CTCAACCCACGAAACGAGCGTACGGGTGCTCA
* * * *
23859775 ACCGACCGGAGAGGCAGAATG-AGCAAGCCAGGGATTGGCCCGGTCCCCCTCTGCGTGCTACCGA
64 ACCGACCAGAGAGGCAGAATGCA-CAAGCC-GGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGA
*** *
23859839 TCTTGCTATAACAACCCTCGGTCCGGCTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGC
127 TCTTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * ** * *
23859904 CAACCCACGAAACGGGTGTGCGAGCACTCAGCCTGCTGGAGAGGCAGAATGCGCAAGCCGAGGAT
192 CAACCCATGAAACGAGCGTGCGGGTGCTCA-CCTGCCGGAGAGGCAGAATGCGCAAGTCGAGGAT
* * * * *
23859969 CGATCTGGTCCCCCCTACGTGCTTTCGATCCTACTGCCGCAACCCTCGATCTGATTCGATCTTAG
256 CGACCCGGTCCCCCCTGCGTGCTATCGATCCTACTGCCGCAACCCTCG-TCCG-TTCGATCTTAG
23860034 ACTGGGAATGAACTCCGTATG
319 ACTGGGAATGAACTCCGTATG
* *
23860055 CTTAGACTGGGGATGAACTCCGTATGCCTAACTCAACCCACGAAATGAGCGTACGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTACGGGTGCTCAAC
** * * * * * * *
23860120 CGGTCAGAGAGGCATAATGCGCAAGTCGAGGATCAGCCTGATCCCCCTCTGCCTGCTGTCGAT
66 CGACCAGAGAGGCAGAATGCACAAGCCG-GGATCGGCCCGATCCCCCTCTGCGTGCTGCCGAT
23860183 GCCGCTGCCG
Statistics
Matches: 665, Mismatches: 127, Indels: 94
0.75 0.14 0.11
Matches are distributed among these distances:
342 5 0.01
343 226 0.34
344 2 0.00
345 3 0.00
346 2 0.00
347 3 0.00
348 1 0.00
349 1 0.00
350 2 0.00
351 1 0.00
352 5 0.01
354 4 0.01
355 129 0.19
356 129 0.19
357 5 0.01
359 5 0.01
360 1 0.00
361 2 0.00
362 1 0.00
363 2 0.00
364 3 0.00
365 1 0.00
366 2 0.00
367 1 0.00
368 126 0.19
369 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (339 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTACGGGTGCTCAAC
CGACCAGAGAGGCAGAATGCACAAGCCGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCTT
GCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCATGAAACGAGCGTGCGGGTGCTCACCTGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACC
CGGTCCCCCCTGCGTGCTATCGATCCTACTGCCGCAACCCTCGTCCGTTCGATCTTAGACTGGGA
ATGAACTCCGTATG
Found at i:23860844 original size:159 final size:157
Alignment explanation
Indices: 23860673--23861036 Score: 379
Period size: 159 Copynumber: 2.3 Consensus size: 157
23860663 CTACTACTGC
* * * *
23860673 AACCCTCAGTCCGATCCGATCTTAGACTGAGAATGAGCTCCGTGTGCCTAAGTCAACCCACAAAA
1 AACCCTCGGTCCGATCCGATCTTAGACTG-GAATGAACTCCGTATGCCTAAGCCAACCCACAAAA
** * * *
23860738 TGAGCGTACGGGCGCTAAGTCGGCCAGAGAGGCATAATGCGCAAGTCAAGGATCGACTCGATCCC
65 CAAGCGTACGGGCGCTAAGCCGACCAGAGAGGCAGAATGCGCAAGTCAAGGATCGACTCGATCCC
* *
23860803 CCTCGGCTTGCTGCCGATCCCGCAGCCAT
130 CCT-GGCATGCTACCGATCCCGCAGCCAT
* * ** * *
23860832 AATCCTCGGTCCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
1 AACCCTCGGTCCGATC-CGATCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAA
* * * * * * *** *
23860896 ACAAGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAGAATGTGCAAGTTGGGGATCGACTCGGTCC
64 ACAAGCGTACGGGCGCTAAGCCGACCAGAGAGGCAGAATGCGCAAGTCAAGGATCGACTCGATCC
* * * * *
23860961 CCCTTGCATGCTATCGATCCTGCTGCCGT
129 CCCTGGCATGCTACCGATCCCGCAGCCAT
*
23860990 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 AACCCTCGGTCCGATCCGATCTTAGACT-GGAATGAACTCCGTATGC
23861037 TTAGACTGGG
Statistics
Matches: 163, Mismatches: 38, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
157 1 0.01
158 56 0.34
159 104 0.64
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
AACCCTCGGTCCGATCCGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAC
AAGCGTACGGGCGCTAAGCCGACCAGAGAGGCAGAATGCGCAAGTCAAGGATCGACTCGATCCCC
CTGGCATGCTACCGATCCCGCAGCCAT
Found at i:23861039 original size:26 final size:26
Alignment explanation
Indices: 23861010--23861062 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23861000 CCGGTCCGAT
23861010 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23861036 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23861062 C
1 C
23861063 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23861364 original size:171 final size:171
Alignment explanation
Indices: 23861035--23861404 Score: 390
Period size: 171 Copynumber: 2.2 Consensus size: 171
23861025 AACTCCGTAT
* * *
23861035 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGGTACTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCACTCAG
* * * ** * ** * *
23861100 TCGGTCGGAGAGGCATAATGCACAAGCCGGGGATCAGCCAGATCCCCTTCTGCATGCTGTCGATC
66 CCAGCCAAAGAGGCAGAATGCACAAGCCGGGGATCAGCCAGATCCCCCCCTGCATGCTGCCAATC
*
23861165 CCTCTGCCGGTCTTGCTGCCACAACCCTC-GATCCGGTTGGG
131 CCTCTGCCGGTCCTGCTGCCACAACCCTCTG-TCCGGTTGGG
* ** *
23861206 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCACTCA
*
23861270 GCCAGCCAAAGAGGCAGAATGCACAAGTCGGGGATCAGCCTAG-TCCCCCCCTGCATGCTGCCAA
65 GCCAGCCAAAGAGGCAGAATGCACAAGCCGGGGATCAGCC-AGATCCCCCCCTGCATGCTGCCAA
* * * * ** *
23861334 T-CCTGTTGCTGGTCCTGTTGTCGA-AACCCTCTGTCCGGTCCGA
129 TCCCT-CTGCCGGTCCTGCTG-CCACAACCCTCTGTCCGGTTGGG
* ** *
23861377 TCTTAGACTACGAATGAACTCTGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
23861405 TTAGACATGG
Statistics
Matches: 163, Mismatches: 30, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
170 4 0.02
171 153 0.94
172 6 0.04
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.22
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCACTCAG
CCAGCCAAAGAGGCAGAATGCACAAGCCGGGGATCAGCCAGATCCCCCCCTGCATGCTGCCAATC
CCTCTGCCGGTCCTGCTGCCACAACCCTCTGTCCGGTTGGG
Found at i:23861764 original size:26 final size:26
Alignment explanation
Indices: 23861720--23861772 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23861710 CCAGTTCGAT
23861720 CTTAGACTAGGAATCAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
* * *
23861746 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
23861772 C
1 C
23861773 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCGTATG
Found at i:23862438 original size:26 final size:26
Alignment explanation
Indices: 23862402--23862451 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
23862392 CTGATCCGAT
* *
23862402 CTTAGAGT-GGGAGTGAACTTCGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
23862428 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGGATGAACTCCGTA
23862452 CGCCTAAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:23862816 original size:27 final size:28
Alignment explanation
Indices: 23862777--23862832 Score: 80
Period size: 27 Copynumber: 2.0 Consensus size: 28
23862767 TCGGTCTGAT
23862777 CTTAGACTAGGGAATG-AACTCCGTATG
1 CTTAGACTAGGGAATGTAACTCCGTATG
*
23862804 CTTAGAC-ATGGGAATGTAACTTCGTATG
1 CTTAGACTA-GGGAATGTAACTCCGTATG
23862832 C
1 C
23862833 CTAAGCCGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 1 0.04
27 14 0.54
28 11 0.42
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (28 bp):
CTTAGACTAGGGAATGTAACTCCGTATG
Found at i:23864617 original size:158 final size:154
Alignment explanation
Indices: 23864432--23864795 Score: 354
Period size: 159 Copynumber: 2.3 Consensus size: 154
23864422 CTGACTGGGG
* * *
23864432 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAACAACCCACGAAACGGGCGTGCGGGTGCTCAAC
1 CTTAGACTA-GGAATGAACTCCCTATGCC-AAACAACCCATGAAACGAGCGTGCGAGTGCTCAAC
* * * * * *
23864496 CGACTGGAGAGGCAGAATGCGCAAGTCAAAGATCGGCTCAGTCCCCCCTGCGTGCTATCGATCCC
64 CGACCGGAGAGGCAGAATGCCCAAGCCAAAGATCGGCCCAGT-CCCCCTACGTGCTATAGATCCC
** *
23864561 ATTGTCGCAACCCTCGGTCTTGATCCGAT
128 ACAGTCGCAACCCTCGGTC--GATCCAAT
* * * * * * *
23864590 CTTAGACTAGGAATGAACTCCGTATGCCCAAGTCAACCGATAAAATGAGCGTGCGAGTGCTGAGC
1 CTTAGACTAGGAATGAACTCCCTATG-CCAA-ACAACCCATGAAACGAGCGTGCGAGTGCTCAAC
* *** * *
23864655 CGACCGGAGAGGCATAATGCCCAAGCCGGGGATCGGCCCAGTCCCCCTACGTGCTGTAGATCCTA
64 CGACCGGAGAGGCAGAATGCCCAAGCCAAAGATCGGCCCAGTCCCCCTACGTGCTATAGATCCCA
*
23864720 CAGTCGTAACCCTCGGTCGATCCAAT
129 CAGTCGCAACCCTCGGTCGATCCAAT
* * * *
23864746 CATAGA-TCGAGAATGAACTCCTTATGCCAAAGTCAACCCATGAAAAGAGC
1 CTTAGACTAG-GAATGAACTCCCTATGCCAAA--CAACCCATGAAACGAGC
23864796 ATACGGGCAC
Statistics
Matches: 167, Mismatches: 33, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
155 6 0.04
156 41 0.25
158 59 0.35
159 61 0.37
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.19
Consensus pattern (154 bp):
CTTAGACTAGGAATGAACTCCCTATGCCAAACAACCCATGAAACGAGCGTGCGAGTGCTCAACCG
ACCGGAGAGGCAGAATGCCCAAGCCAAAGATCGGCCCAGTCCCCCTACGTGCTATAGATCCCACA
GTCGCAACCCTCGGTCGATCCAAT
Found at i:23864667 original size:159 final size:156
Alignment explanation
Indices: 23864479--23864783 Score: 360
Period size: 159 Copynumber: 1.9 Consensus size: 156
23864469 CACGAAACGG
* * * * *
23864479 GCGTGCGGGTGCTCAACCGACTGGAGAGGCAGAATGCGCAAGTCAAAGATCGGCTCAGTCCCCCC
1 GCGTGCGAGTGCTCAACCGACCGGAGAGGCAGAATGCCCAAGCCAAAGATCGGCCCAGT-CCCCC
* * ** * *
23864544 TGCGTGCTATCGATCCCATTGTCGCAACCCTCGGTCTTGATCCGATCTTAGACTAG-GAATGAAC
65 TACGTGCTATAGATCCCACAGTCGCAACCCTCGGTC--GATCCAATCATAGA-TAGAGAATGAAC
*
23864608 TCCGTATGCCCAAGTCAACCGATAAAATGA
127 TCCGTATGCCAAAGTCAACCGATAAAATGA
* * * ***
23864638 GCGTGCGAGTGCTGAGCCGACCGGAGAGGCATAATGCCCAAGCCGGGGATCGGCCCAGTCCCCCT
1 GCGTGCGAGTGCTCAACCGACCGGAGAGGCAGAATGCCCAAGCCAAAGATCGGCCCAGTCCCCCT
* * * * *
23864703 ACGTGCTGTAGATCCTACAGTCGTAACCCTCGGTCGATCCAATCATAGATCGAGAATGAACTCCT
66 ACGTGCTATAGATCCCACAGTCGCAACCCTCGGTCGATCCAATCATAGATAGAGAATGAACTCCG
23864768 TATGCCAAAGTCAACC
131 TATGCCAAAGTCAACC
23864784 CATGAAAAGA
Statistics
Matches: 122, Mismatches: 23, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
155 2 0.02
156 38 0.31
158 34 0.28
159 48 0.39
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
GCGTGCGAGTGCTCAACCGACCGGAGAGGCAGAATGCCCAAGCCAAAGATCGGCCCAGTCCCCCT
ACGTGCTATAGATCCCACAGTCGCAACCCTCGGTCGATCCAATCATAGATAGAGAATGAACTCCG
TATGCCAAAGTCAACCGATAAAATGA
Found at i:23864819 original size:156 final size:158
Alignment explanation
Indices: 23864490--23864823 Score: 336
Period size: 156 Copynumber: 2.1 Consensus size: 158
23864480 CGTGCGGGTG
* * * * * *** * * *
23864490 CTCAACCGACTGGAGAGGCAGAATGCGCAAGTCAAAGATCGGCTCAGTCCCCCCTGCGTGCTATC
1 CTCAGCCGACCGGAGAGGCATAATGCCCAAGCCGGGGATCGGCCCAGTCCCCCCTACGTGCTATA
** * * * *
23864555 GATCCCATTGTCGCAACCCTCGGTCTTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCCA
66 GATCCCACAGTCGCAACCCTCGGTC-TGATCCAATCATAGACGAGGAATGAACTCCGTATGCCAA
* * * **
23864620 AGTCAACCGATAAAATGAGCGTGCGAGTG
130 AGTCAACCCATAAAATGAGCATACGAGCA
* *
23864649 CTGAGCCGACCGGAGAGGCATAATGCCCAAGCCGGGGATCGGCCCAGT-CCCCCTACGTGCTGTA
1 CTCAGCCGACCGGAGAGGCATAATGCCCAAGCCGGGGATCGGCCCAGTCCCCCCTACGTGCTATA
* * *
23864713 GATCCTACAGTCGTAACCCTCGGTC-GATCCAATCATAGATCGA-GAATGAACTCCTTATGCCAA
66 GATCCCACAGTCGCAACCCTCGGTCTGATCCAATCATAGA-CGAGGAATGAACTCCGTATGCCAA
*
23864776 AGTCAACCCATGAAAA-GAGCATACGGGCA
130 AGTCAACCCAT-AAAATGAGCATACGAGCA
*
23864805 CTCAGTCG-CTCGGAGAGGC
1 CTCAGCCGAC-CGGAGAGGC
23864824 TGGTTGAAGA
Statistics
Matches: 142, Mismatches: 30, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
155 1 0.01
156 63 0.44
157 6 0.04
158 34 0.24
159 38 0.27
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (158 bp):
CTCAGCCGACCGGAGAGGCATAATGCCCAAGCCGGGGATCGGCCCAGTCCCCCCTACGTGCTATA
GATCCCACAGTCGCAACCCTCGGTCTGATCCAATCATAGACGAGGAATGAACTCCGTATGCCAAA
GTCAACCCATAAAATGAGCATACGAGCA
Found at i:23865295 original size:157 final size:158
Alignment explanation
Indices: 23864930--23865338 Score: 518
Period size: 157 Copynumber: 2.6 Consensus size: 158
23864920 CCGGTTGGGG
* * * *
23864930 CTTAGACAT-GGAATGCACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTTAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
23864994 CCGGTCGGAGAGGCAGAATGTGCAAGCTGAGGATCGACCTGATCCCCCCTTCGTGCTGCCAATCC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGACCCCCCCTACGTGCTGCCAATCC
* *
23865059 TGCTGCCACAACCTTCGGTCTGGTCTAAT
130 TGCTACCACAACCTTCGGTCTAGTCTAAT
* * *
23865088 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
23865153 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCG-CCCGGCCCCCCCTACGTGCTGTCGATCTT
66 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGACCCCCCCTACGTGCTGCCAATCCT
* *
23865217 GCTACCACAACCTTCGGTTTAGTCTGAT
131 GCTACCACAACCTTCGGTCTAGTCTAAT
** * * *
23865245 CTTAGACTGGGAATGAACTCCGTATGCCTAATTCAACCCATGAAATGAGCGTGC-GGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * *
23865309 CGGTCAGAGATGCATAATGCGCAAGCCGGG
66 CGGTCGGAGAGGCAGAATGCGCAAGCCGGG
23865339 TGTCATGAGC
Statistics
Matches: 216, Mismatches: 34, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
156 34 0.16
157 95 0.44
158 87 0.40
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGACCCCCCCTACGTGCTGCCAATCCT
GCTACCACAACCTTCGGTCTAGTCTAAT
Found at i:23867683 original size:26 final size:26
Alignment explanation
Indices: 23867647--23867696 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
23867637 CTGATCCGAT
* *
23867647 CTTAGAGTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23867673 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
23867697 CGCCTAAGCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23868055 original size:26 final size:26
Alignment explanation
Indices: 23868026--23868078 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23868016 CCGGTCTGAT
23868026 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
23868052 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23868078 C
1 C
23868079 CTAAGCCGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23869397 original size:26 final size:26
Alignment explanation
Indices: 23869359--23869411 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23869349 GGCTCAAAAT
23869359 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23869385 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23869411 C
1 C
23869412 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23870049 original size:26 final size:26
Alignment explanation
Indices: 23870020--23870070 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
23870010 GATCCGATCA
*
23870020 TAGACT-GGGAATGAACTCCGTATGCT
1 TAGACTAGGG-ATAAACTCCGTATGCT
*
23870046 TAGACTAGGGATAAACTCTGTATGC
1 TAGACTAGGGATAAACTCCGTATGC
23870071 CAAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTAGGGATAAACTCCGTATGCT
Found at i:23870417 original size:26 final size:26
Alignment explanation
Indices: 23870388--23870438 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23870378 CGGTCTGATC
23870388 TTAGAC-TGGGAATGAACTCCGTATGG
1 TTAGACAT-GGAATGAACTCCGTATGG
23870414 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
23870439 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGG
Found at i:23870449 original size:185 final size:184
Alignment explanation
Indices: 23870229--23870596 Score: 511
Period size: 185 Copynumber: 2.0 Consensus size: 184
23870219 TGGTAGGGGC
* * *
23870229 TTAGACGTGGAATGCACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCACTCAACT
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCACTCAACC
* * * * *
23870294 GGCCGGAAAGGCAGAATGTGCAAGCCCAGGATCGGCCTGATCCCCCCTTTCGTGCTGCCAATCCT
66 GACCGGAAAGGCAGAATGCGCAAGCCCAGGATCGACCCGATCCCCCC-TACGTGCTGCCAATCCT
* *
23870359 ACTACCACAACCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGG
130 ACTACCACAACCTTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGG
* * * *
23870414 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCACTCAACC
* * ** * * *
23870479 GATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCTTA
66 GACCGGAAAGGCAGAATGCGCAAGCCCAGGATCGACCCGATCCCCCCTACGTGCTGCCAATCCTA
** *
23870544 CTACCACAACCTTCAGTTTAGTTTGATCTTAGACTGGGAATGAACTCCGTATG
131 CTACCACAACCTTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
23870597 CCTAATTCAA
Statistics
Matches: 159, Mismatches: 24, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
184 62 0.39
185 97 0.61
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (184 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCACTCAACC
GACCGGAAAGGCAGAATGCGCAAGCCCAGGATCGACCCGATCCCCCCTACGTGCTGCCAATCCTA
CTACCACAACCTTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGG
Found at i:23876513 original size:26 final size:26
Alignment explanation
Indices: 23876484--23876534 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
23876474 CAGGTCCAAT
23876484 CTTAGATTGGGAATGAACTCCATATC
1 CTTAGATTGGGAATGAACTCCATATC
*
23876510 CTTAGATTGGGGATGAACTCCATAT
1 CTTAGATTGGGAATGAACTCCATAT
23876535 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATC
Found at i:23877410 original size:158 final size:157
Alignment explanation
Indices: 23876918--23877410 Score: 517
Period size: 159 Copynumber: 3.1 Consensus size: 157
23876908 CTTAGACATC
* *
23876918 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCAACCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGA
* * * * * *
23876983 GGCAGAATGTGCAAGCTGGGGATCGACCC-AGTCCCCCCCTTCGTGCTGTCGATCCTACTACTAC
66 GGCAGAATGTGCAAG-TTGGGATCGACCCGA-T-CCCCCCTGCGTGCTGTCGATCTTGCTGCCAC
*
23877047 AACCCTCGGTTCAG-TCTGATCTTAGACTGG
128 AACCCTCGGTTCGGCT-TGATCTTAGACTGG
** * * * * * ** *
23877077 GAATGAACTATGCATGCATAAGTCAACCCACGAAACGAGCGTGTGGGCGCTGAACCGATCGAAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGA
* * * * *
23877142 GGCATAATGTGCAAGTCGAGGATCGACCCGATCCCCCTCTGCATGCTGTTGGTCTTGCTGCCACA
66 GGCAGAATGTGCAAGTTG-GGATCGACCCGATCCCCC-CTGCGTGCTGTCGATCTTGCTGCCACA
* * **
23877207 ACCCTCGGTCCGGCTGGGGCTTAGACAT-G
129 ACCCTCGGTTCGGCTTGATCTTAGAC-TGG
* * * *
23877236 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGCGCTCAGTCGATCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGA
** * * * **
23877301 GGCAGAATACGCAAGTTGGGAATC-AGCCCGATCCCTCCTGCGTGCTGCCAATCTTGCTGCCGTA
66 GGCAGAATGTGCAAGTTGGG-ATCGA-CCCGATCCCCCCTGCGTGCTGTCGATCTTGCTGCCACA
*
23877365 ACCCTCGGTTCGGCTTAATCTTAGACTGG
129 ACCCTCGGTTCGGCTTGATCTTAGACTGG
23877394 GAATGAACTCCGTATGC
1 GAATGAACTCCGTATGC
23877411 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 59, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 68 0.25
159 195 0.73
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGA
GGCAGAATGTGCAAGTTGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCTTGCTGCCACAAC
CCTCGGTTCGGCTTGATCTTAGACTGG
Found at i:23877430 original size:25 final size:26
Alignment explanation
Indices: 23877384--23877435 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
23877374 TCGGCTTAAT
23877384 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23877410 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23877435 C
1 C
23877436 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23878280 original size:26 final size:26
Alignment explanation
Indices: 23878251--23878303 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23878241 CCGGTCCGAT
23878251 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23878277 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23878303 C
1 C
23878304 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23878758 original size:17 final size:16
Alignment explanation
Indices: 23878731--23878766 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
23878721 GGTAAGTCAA
*
23878731 TTTTATTTTTTGTTAT
1 TTTTATTTTTTATTAT
23878747 TTTTATTTTTTTATTAT
1 TTTTA-TTTTTTATTAT
23878764 TTT
1 TTT
23878767 ATTCTATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.14, C:0.00, G:0.03, T:0.83
Consensus pattern (16 bp):
TTTTATTTTTTATTAT
Found at i:23878766 original size:16 final size:16
Alignment explanation
Indices: 23878730--23878769 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
23878720 GGGTAAGTCA
*
23878730 ATTTTA-TTTTTTGTT
1 ATTTTATTTTTTTATT
23878745 ATTTTTATTTTTTTATT
1 A-TTTTATTTTTTTATT
23878762 ATTTTATT
1 ATTTTATT
23878770 CTATATTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 12 0.55
17 9 0.41
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (16 bp):
ATTTTATTTTTTTATT
Found at i:23878819 original size:4 final size:4
Alignment explanation
Indices: 23878806--23878887 Score: 50
Period size: 4 Copynumber: 20.8 Consensus size: 4
23878796 ATATCCTATG
* *
23878806 TATT TA-T TATT TATT TA-T TATT ACTATT TATT AATATA TATT TTTT
1 TATT TATT TATT TATT TATT TATT --TATT TATT --TATT TATT TATT
*
23878852 TA-T T-TT TATT T-TAT TATT T-TG TATT TATT TATT TAT
1 TATT TATT TATT TAT-T TATT TATT TATT TATT TATT TAT
23878888 CTAATTATAT
Statistics
Matches: 61, Mismatches: 6, Indels: 22
0.69 0.07 0.25
Matches are distributed among these distances:
3 13 0.21
4 40 0.66
5 1 0.02
6 7 0.11
ACGTcount: A:0.27, C:0.01, G:0.01, T:0.71
Consensus pattern (4 bp):
TATT
Found at i:23878828 original size:14 final size:14
Alignment explanation
Indices: 23878809--23878923 Score: 64
Period size: 14 Copynumber: 8.1 Consensus size: 14
23878799 TCCTATGTAT
23878809 TTATTATTTATTTA
1 TTATTATTTATTTA
*
23878823 TTATTA-CTATTTA
1 TTATTATTTATTTA
* * *
23878836 TTAATATATATTTTT
1 TTATTATTTA-TTTA
23878851 TTATT-TTTATTTTA
1 TTATTATTTA-TTTA
23878865 TTATT-TTGTATTTA
1 TTATTATT-TATTTA
*
23878879 -T-TTATTTATCTAA
1 TTATTATTTAT-TTA
23878892 TTATATATCTGT-TATTA
1 TTAT-TAT-T-TAT-TTA
23878909 TTATTATTT-TTTA
1 TTATTATTTATTTA
23878922 TT
1 TT
23878924 TATCCTATAA
Statistics
Matches: 81, Mismatches: 10, Indels: 21
0.72 0.09 0.19
Matches are distributed among these distances:
12 5 0.06
13 21 0.26
14 29 0.36
15 11 0.14
16 6 0.07
17 8 0.10
18 1 0.01
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.69
Consensus pattern (14 bp):
TTATTATTTATTTA
Found at i:23879916 original size:5 final size:5
Alignment explanation
Indices: 23879908--23879962 Score: 51
Period size: 5 Copynumber: 10.6 Consensus size: 5
23879898 TTTACTTTTC
*
23879908 TTTAT TTTAT TTTATTT TTTAT TTTCACT TTTAT TTTGT TTTA- -TTAT
1 TTTAT TTTAT TTTA--T TTTAT TTT-A-T TTTAT TTTAT TTTAT TTTAT
23879955 TTTAT TTT
1 TTTAT TTT
23879963 CTTTAAATAA
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
3 3 0.07
5 28 0.67
6 2 0.05
7 9 0.21
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.78
Consensus pattern (5 bp):
TTTAT
Found at i:23879938 original size:33 final size:31
Alignment explanation
Indices: 23879906--23879963 Score: 93
Period size: 29 Copynumber: 1.9 Consensus size: 31
23879896 GTTTTACTTT
23879906 TCTTTATTTTATTTTATT-TTTTATTTTCAC
1 TCTTTATTTTATTTTATTATTTTATTTTCAC
*
23879936 T-TTTATTTTGTTTTATTATTTTATTTTC
1 TCTTTATTTTATTTTATTATTTTATTTTC
23879964 TTTAAATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.16, C:0.07, G:0.02, T:0.76
Consensus pattern (31 bp):
TCTTTATTTTATTTTATTATTTTATTTTCAC
Found at i:23879954 original size:13 final size:13
Alignment explanation
Indices: 23879909--23879962 Score: 56
Period size: 13 Copynumber: 3.9 Consensus size: 13
23879899 TTACTTTTCT
23879909 TTATTTTATTTTA
1 TTATTTTATTTTA
23879922 TT-TTTTATTTTCA
1 TTATTTTATTTT-A
*
23879935 CTTTTATTTTGTTTTA
1 ---TTATTTTATTTTA
23879951 TTATTTTATTTT
1 TTATTTTATTTT
23879963 CTTTAAATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
12 9 0.26
13 14 0.41
16 3 0.09
17 8 0.24
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.78
Consensus pattern (13 bp):
TTATTTTATTTTA
Found at i:23880042 original size:59 final size:58
Alignment explanation
Indices: 23879979--23880322 Score: 456
Period size: 58 Copynumber: 5.7 Consensus size: 58
23879969 ATAAAAATAA
23879979 AAAAAGAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
1 AAAAA-AATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * * *
23880038 AAAAAAAGGTTTTTTTTGAGGAAAAGCTGAAAGTATCAATTTTCCTTGAAGATCAAAATTTTC
1 AAAAAAA---TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAA-TTTC
* * *
23880101 AAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATTAATTTTC
1 --AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
** *
23880161 AAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTTC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAA-TTTC
* * *
23880220 CAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
23880278 AAAAAAATCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 AAAAAAAT--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
23880323 CGAAATTAAA
Statistics
Matches: 249, Mismatches: 25, Indels: 21
0.84 0.08 0.07
Matches are distributed among these distances:
58 61 0.24
59 57 0.23
60 38 0.15
61 38 0.15
62 44 0.18
63 4 0.02
65 7 0.03
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.35
Consensus pattern (58 bp):
AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
Found at i:23880338 original size:60 final size:59
Alignment explanation
Indices: 23879979--23880339 Score: 426
Period size: 60 Copynumber: 6.0 Consensus size: 59
23879969 ATAAAAATAA
* *
23879979 AAAAAGAAT-ATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
1 AAAAA-AATAATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAATTAAATTTTC
** * * *
23880038 AAAAAAAGGTTTTTTTTGAGGAAAAGCTGAAAGTATCAATTTTCCTTGAAGATCAAAATTTTC
1 AAAAAAA--TAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAT-TAAATTTTC
* *
23880101 AAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATT-AATTTTC
1 AAAAAAATA-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAATTAAATTTTC
** * *
23880161 AAAAAAA-GGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTTC
1 AAAAAAATAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAATTAAATTTTC
* * *
23880220 CAAAAAAT-ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAATAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATTAAATTTTC
** *
23880278 AAAAAAATCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTC
1 AAAAAAAT-AATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATTAAATTTTC
23880338 AA
1 AA
23880340 GTATCAATTT
Statistics
Matches: 259, Mismatches: 32, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
58 59 0.23
59 51 0.20
60 62 0.24
61 31 0.12
62 42 0.16
63 14 0.05
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.34
Consensus pattern (59 bp):
AAAAAAATAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATTAAATTTTC
Found at i:23882830 original size:26 final size:26
Alignment explanation
Indices: 23882789--23882841 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23882779 CCGATCTGAT
*
23882789 CTTAGACTGTGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
23882815 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
23882841 C
1 C
23882842 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23883892 original size:26 final size:26
Alignment explanation
Indices: 23883856--23883908 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23883846 CTGATCCGAT
*
23883856 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCATATG
*
23883882 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCATATG
23883908 C
1 C
23883909 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCATATG
Found at i:23884297 original size:159 final size:158
Alignment explanation
Indices: 23884055--23884556 Score: 433
Period size: 159 Copynumber: 3.2 Consensus size: 158
23884045 TGGTTGGGGT
* * * ** * * * * *
23884055 TTAGACTT-GGAATGAGCTCCTTATGCCTAAGCCAACCCACAAAACGGGCATGCGAGCACTCAGC
1 TTAGA-TTGGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCGTACGGGCTCTCAGC
* * * * *
23884119 CGACCGGAGAGGTAGAATGCGCAAGTCGGGGATCGGCCCAGTCCCCTCCTGCATGCTGTCGATCC
65 CGGCCGAAGAGGCAGAATGCGCAAGACGGGGATCGGCCC-GTCCCCTCCTGCGTGCTGTCGATCC
* *
23884184 TGCTACCGCAACCCTCAGTCTGGTCTGACC
129 TGCTACCACAACCCTCAGTCAGGTCTGACC
* * * * * *
23884214 ATAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGG-TGCTGAGC
1 TTAGATTGGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCGTACGGGCT-CTCAGC
* * * * * * *
23884278 CTGCCGTAGAGGCATAATGCGTAAGACGGGGATCGACCCGATCCACCT-CTACGTGCTGTCGGTC
65 CGGCCGAAGAGGCAGAATGCGCAAGACGGGGATCGGCCCG-TCC-CCTCCTGCGTGCTGTCGATC
* * **
23884342 CTGCTACCACAACCCTCTGTCCGG-CTGGGGC
128 CTGCTACCACAACCCTCAGTCAGGTCT-GACC
* *
23884373 TTAGACAT-GGAATGAACTCTC-TATGCCTAAGCCAAACCATGAAACGGGCGTACGGGCTCTCAG
1 TTAGA-TTGGGAATGAACTC-CGTATGCCTAAGCCAAACCATGAAACGAGCGTACGGGCTCTCAG
* * * * *
23884436 CCGGCCGAAGAGGCAGAATGTGCAAGCCGAGGATCGGTCCGGTCCCC-CCTGCGTGCTGCCGATC
64 CCGGCCGAAGAGGCAGAATGCGCAAGACGGGGATCGG-CCCGTCCCCTCCTGCGTGCTGTCGATC
* * * * * *
23884500 CTGTTGCCACAACCCTCGGTCAGATCCGATC
128 CTGCTACCACAACCCTCAGTCAGGTCTGACC
* *
23884531 TTCGATTGGGAATGAACTCTGTATGC
1 TTAGATTGGGAATGAACTCCGTATGC
23884557 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 60, Indels: 27
0.76 0.17 0.08
Matches are distributed among these distances:
157 1 0.00
158 61 0.23
159 199 0.74
160 9 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
TTAGATTGGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCGTACGGGCTCTCAGCC
GGCCGAAGAGGCAGAATGCGCAAGACGGGGATCGGCCCGTCCCCTCCTGCGTGCTGTCGATCCTG
CTACCACAACCCTCAGTCAGGTCTGACC
Found at i:23885103 original size:26 final size:26
Alignment explanation
Indices: 23885074--23885126 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23885064 CCGGTCCAAT
23885074 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
23885100 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
23885126 C
1 C
23885127 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23885986 original size:26 final size:26
Alignment explanation
Indices: 23885957--23886009 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23885947 CCGATCAGAT
23885957 CTTAGAC-TGGAAATGAACTCCGTATG
1 CTTAGACATGG-AATGAACTCCGTATG
23885983 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23886009 C
1 C
23886010 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23886766 original size:197 final size:196
Alignment explanation
Indices: 23886418--23886811 Score: 457
Period size: 197 Copynumber: 2.0 Consensus size: 196
23886408 CCCCCTTGCG
* * * *
23886418 TGCTGTTGATCCTACTGTCGCAACCCTTGGTCCGATTAGATCTTAGACTGGGAATGAACTCCGTA
1 TGCTGCTGATCCTACTGTCGCAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAACTCCGTA
* ** * * * **
23886483 CGCTTAGACTAGAGATGAACTCTGTATGCCTAAGTCAACAAACGAAACGAGCGTGTGGGTGCTCA
66 CGCTTAGACTAGAGATAAACTCCATATGCCTAAGCCAACAAACGAAACGAACGTGCGGGCACTCA
* * * * *
23886548 GTTGACCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCAATCCCCCCCTACGTGCTGTCGAT
131 GTCGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCAAT-CCCCCCTACGTGCTGTCGAT
23886613 CC
195 CC
* * * * **
23886615 TGCTGCTGGTCCTACTGTTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTTTGTA
1 TGCTGCTGATCCTACTGTCGCAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAACTCCGTA
* * ** * *
23886680 TGCTTAGACATGGA-ATAAACTCCATATGCCTAAGCCAACTCATGAAACGAACGTGCGGGCATTC
66 CGCTTAGAC-TAGAGATAAACTCCATATGCCTAAGCCAACAAACGAAACGAACGTGCGGGCACTC
* * ** *
23886744 AGTCGATCGGAGAGGTAGAATGCGCAAGCCGGGGACCGACCCGGTCCCCTCTACGTGCTGTCGAT
130 AGTCGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCAATCCCCCCTACGTGCTGTCGAT
23886809 CC
195 CC
23886811 T
1 T
23886812 ACTACCGCAA
Statistics
Matches: 162, Mismatches: 34, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
196 22 0.14
197 137 0.85
198 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (196 bp):
TGCTGCTGATCCTACTGTCGCAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAACTCCGTA
CGCTTAGACTAGAGATAAACTCCATATGCCTAAGCCAACAAACGAAACGAACGTGCGGGCACTCA
GTCGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCAATCCCCCCTACGTGCTGTCGATC
C
Found at i:23886940 original size:699 final size:698
Alignment explanation
Indices: 23885798--23887283 Score: 1752
Period size: 699 Copynumber: 2.1 Consensus size: 698
23885788 TAGACATGGA
* * ** * * * ** * **
23885798 ATGAACACCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTCAACCGGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACAAACGAAACGAGCGCGCGGACGCTCAGCCGACCGGAGAGG
* * * ** * *
23885863 CAGAATACACAAGCCGTGGATCGACCTGATCCTCCCCTGCGTGCTATCGATCCTGCTGCTGGTCC
66 CAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCCCTACGTGCTATCGATCCTGCTGCTGGTCC
* *
23885928 TGCTACCGCAAACCTTGATCCGATCAGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACATG
131 TACTACCGCAAACCTCGATCCGATCAGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACATG
* * * * * *
23885993 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGCCGGTCGAGAG
196 GAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAACATGCGGGCACTCAGCCGATCGAGAG
* * * ** *
23886058 GCGAAATGCGCAAGCTGGGGATCGACTTGGTCCCTCCCTGCGTGCTGTCGAGCCTACAACCGCAA
261 GAGAAATGCGCAAGCCGGGGACCGACCCGGTCCCTCCCTACGTGCTGTCGAGCCTACAACCGCAA
23886123 CCCTCACTCCACTCCGATCTTAGACTAGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACA
326 CCCTCACTCCACTCCGATCTTAGACTAGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACA
* *
23886188 AGCGTGCGGGTGCTAAACCGACCGTAGAGGCATAATGTGCAAGCTGAGGATCGGCCCGATCCCCC
391 AGCGTGCGGGTGCTAAACCGACCGGAGAGGCATAATGCGCAAGCTGAGGATCGGCCCGATCCCCC
* *
23886253 TATGCGTGCCGTCAGTTTCC-GCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGA
456 TATGCATGCCGTC-G-GTCCTGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGA
* * * ** * * *
23886317 ACTCCCTATGCTTAAGTCAACCCATGAAACGGGTGTGCGGACACTCAGTCGGTCAGAGAGGTAGA
519 ACTCCCTATGCCTAAGCCAACCCACGAAACGGCCGTGCGGACACTCAGTCGGCCAGAGAGGCAAA
* * * * * *
23886382 ATGCGTAAGCTGGGGATTGACCC-GATCCCCCTTGCGTGCTGTTGATCCTACTGTCGCA-ACCCT
584 ATACGCAAGCCGGGGATCGACCCAG-TCCCCCTTGCGTGCTGTCGATCCTACTG-C-CATAACCT
* *
23886445 T-GGTCCGAT-TAGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTAGAG
646 TCGGTCCGATCT-CATCTTAGACTGAGAATGAACTCCGTACGCTTAGACTAGAG
* * * ** **
23886497 ATGAACTCTGTATGCCTAAGTCAACAAACGAAACGAGCGTGTGGGTGCTCAGTTGACCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACAAACGAAACGAGCGCGCGGACGCTCAGCCGACCGGAGAGG
* * * *
23886562 CAGAATGCGTAAGCTGGGGATCGGCCCAATCCCCCCCTACGTGCTGTCGATCCTGCTGCTGGTCC
66 CAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCCCTACGTGCTATCGATCCTGCTGCTGGTCC
*** * * * * **
23886627 TACTGTTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACATG
131 TACTACCGCAAACCTCGATCCGATCAGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACATG
* * * * *
23886692 GAATAAACTCCATATGCCTAAGCCAACTCATGAAACGAACGTGCGGGCATTCAGTCGATCGGAGA
196 GAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAACATGCGGGCACTCAGCCGATC-GAGA
* * *
23886757 GGTAG-AATGCGCAAGCCGGGGACCGACCCGGTCCC-CTCTACGTGCTGTCGATCCTACTACCGC
260 GG-AGAAATGCGCAAGCCGGGGACCGACCCGGTCCCTCCCTACGTGCTGTCGAGCCTACAACCGC
** * * * *
23886820 AACCCTCGGTCTGA-TTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
324 AACCCTCACTC-CACTCCGATCTTAGACTAGAAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * * *
23886884 ACGAGCGTTCGGGTGCTGAGCC-AGTCGGAGAGGCATAATGCGCAAG-TCGGGGATCGGCCCGAT
388 ACAAGCGTGCGGGTGCTAAACCGA-CCGGAGAGGCATAATGCGCAAGCT-GAGGATCGGCCCGAT
* * * * * *
23886947 CCCCCTCTGTATGCTGTCGGTCCTGCTACCGCAACCCTCGGTCCGGTTGGGGCTTAGACATGGAA
451 CCCCCTATGCATGCCGTCGGTCCTGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAA
* *** *
23887012 TGAACTCCCTATGCCTAAGCCAATCCACGAAACGGCCGTGCGGGTGCTCAGTCGGCCGGAGAGGC
516 TGAACTCCCTATGCCTAAGCCAACCCACGAAACGGCCGTGCGGACACTCAGTCGGCCAGAGAGGC
* * *
23887077 AAAATACGCAAGCCGGGGATCGGCCCAGTCCCCCTTGCGTGCTGTCGATCTTGCTGCCATAACCT
581 AAAATACGCAAGCCGGGGATCGACCCAGTCCCCCTTGCGTGCTGTCGATCCTACTGCCATAACCT
* * * *
23887142 TCGGTCCGGTCTCATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGG
646 TCGGTCCGATCTCATCTTAGACTGAGAATGAACTCCGTACGCTTAGACTAGAG
** * *
23887195 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGCGCGGACGCTCAGCCGACCAGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACAAACGAAACGAGCGCGCGGACGCTCAGCCGACCGGAGAGG
23887260 CA-AGATGCGCAAGCCGGGGATCGA
66 CAGA-ATGCGCAAGCCGGGGATCGA
23887284 ATGGGTGGTA
Statistics
Matches: 657, Mismatches: 119, Indels: 23
0.82 0.15 0.03
Matches are distributed among these distances:
696 2 0.00
697 10 0.02
698 255 0.39
699 356 0.54
700 33 0.05
701 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (698 bp):
ATGAACTCCGTATGCCTAAGTCAACAAACGAAACGAGCGCGCGGACGCTCAGCCGACCGGAGAGG
CAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCCCTACGTGCTATCGATCCTGCTGCTGGTCC
TACTACCGCAAACCTCGATCCGATCAGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACATG
GAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAACATGCGGGCACTCAGCCGATCGAGAG
GAGAAATGCGCAAGCCGGGGACCGACCCGGTCCCTCCCTACGTGCTGTCGAGCCTACAACCGCAA
CCCTCACTCCACTCCGATCTTAGACTAGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACA
AGCGTGCGGGTGCTAAACCGACCGGAGAGGCATAATGCGCAAGCTGAGGATCGGCCCGATCCCCC
TATGCATGCCGTCGGTCCTGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAAC
TCCCTATGCCTAAGCCAACCCACGAAACGGCCGTGCGGACACTCAGTCGGCCAGAGAGGCAAAAT
ACGCAAGCCGGGGATCGACCCAGTCCCCCTTGCGTGCTGTCGATCCTACTGCCATAACCTTCGGT
CCGATCTCATCTTAGACTGAGAATGAACTCCGTACGCTTAGACTAGAG
Found at i:23887018 original size:159 final size:156
Alignment explanation
Indices: 23886681--23887183 Score: 519
Period size: 158 Copynumber: 3.2 Consensus size: 156
23886671 AACTTTGTAT
* * * * * ***
23886681 GCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACTCATGAAACGAACGTGCGGGCATTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * *
23886746 TCGATCGGAGAGGTAGAATGCGCAAGCCGGGGACCGACCCGGT-CCCCTCTACGTGCTGTCGATC
65 TCG-TCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATC
* * *
23886810 CTACTACCGCAACCCTCGGTCTGATTCGA
129 CTGCTACCGCAACCCTCGGTCCGGTT-GA
* * * *
23886839 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGCTGAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * ** *
23886904 CCAGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGTATGCTGTCGGTC
65 TC-GTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATC
*
23886969 CTGCTACCGCAACCCTCGGTCCGGTTGGG
129 CTGCTACCGCAACCCTCGGTCCGGTT-GA
* *
23886998 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATCCACGAAACG-GCCGTGCGGGTGCTCA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGTGCTCA
* *
23887062 GTCGGCCGGAGAGGCAAAATACGCAAGCCGGGGATCGGCCC-AGTCCCCCT-TGCGTGCTGTCGA
64 GTC-GTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGA-TCCCCCTCTGCGTGCTGTCGA
* * ** * *
23887125 TCTTGCTGCCATAACCTTCGGTCCGGTCTCA
127 TCCTGCTACCGCAACCCTCGGTCCGGT-TGA
*
23887156 TCTTAGACTGAGAATGAACTCCGTATGC
1 GCTTAGACTG-GAATGAACTCCGTATGC
23887184 TTAGACTGGG
Statistics
Matches: 285, Mismatches: 52, Indels: 16
0.81 0.15 0.05
Matches are distributed among these distances:
157 3 0.01
158 142 0.50
159 139 0.49
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
CGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCT
GCTACCGCAACCCTCGGTCCGGTTGA
Found at i:23887186 original size:26 final size:26
Alignment explanation
Indices: 23887157--23887209 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23887147 CCGGTCTCAT
23887157 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
23887183 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
23887209 C
1 C
23887210 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:23888782 original size:25 final size:26
Alignment explanation
Indices: 23888732--23888783 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
23888722 CCGGTCTGAT
*
23888732 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
23888758 CTTAGACTGGG-ATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
23888783 C
1 C
23888784 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:23892343 original size:159 final size:156
Alignment explanation
Indices: 23891916--23892345 Score: 361
Period size: 159 Copynumber: 2.7 Consensus size: 156
23891906 AACTCTGTAT
* * * * * *
23891916 GCTTAGATGTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGTGCTCAG
1 GCTTAGA-CTGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAG
* * * *
23891981 TCGACCAAAAGGTAAAATGCGCAAGCCGAGGATCGACCCGAT-CCCCTCCTACGAGCTATCGATC
65 TCGACCGAAAGGCAAAATGCGCAAGCCG-GGATCGGCCCG-TCCCCCTCCTACGAGCTAGCGATC
* *
23892045 CGGCTGCCGCAACCCTCGGTCCGATCCAA
128 CCGCTGCCACAACCCTCGGTCCGATCCAA
** * *
23892074 TTTTAGACTGGGAATGAACT-CTATATGCCTAAGTCAACCCACT-AAATGAGAGTGC-GAGCGCT
1 GCTTAGACT-GGAATGAACTCCT-TATGCCTAAGCCAACCCA-TGAAATGAGCGTGCAG-GCGCT
* * * * * * ** * *
23892136 GAGCCGACCGAAGAAGCATAATGCACAAGCTGGGGATCGGCTTGGTCCCCCT-CTATGTGCT-GC
62 CAGTCGACCGAA-AGGCAAAATGCGCAAGC-CGGGATCGGC-CCGTCCCCCTCCTACGAGCTAGC
* * ***
23892199 AGATCCCGCTGCCACAACCCTCGGTCTG-GCTGGG
124 -GATCCCGCTGCCACAACCCTCGGTCCGATC-CAA
*
23892233 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGGGCGTGCAGGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAG
* *
23892298 TCGACCGGAAAGGCAGAATGCGTAAGCCAGGGATCGGCCCAGTCCCCC
65 TCGACC-GAAAGGCAAAATGCGCAAGCC-GGGATCGGCCC-GTCCCCC
23892346 CTGCATGCTG
Statistics
Matches: 210, Mismatches: 45, Indels: 33
0.73 0.16 0.11
Matches are distributed among these distances:
157 3 0.01
158 57 0.27
159 136 0.65
160 14 0.07
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (156 bp):
GCTTAGACTGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAGT
CGACCGAAAGGCAAAATGCGCAAGCCGGGATCGGCCCGTCCCCCTCCTACGAGCTAGCGATCCCG
CTGCCACAACCCTCGGTCCGATCCAA
Found at i:23892433 original size:26 final size:26
Alignment explanation
Indices: 23892392--23892444 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23892382 TTGGTCTGAT
23892392 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
23892418 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
23892444 C
1 C
23892445 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:23893646 original size:158 final size:155
Alignment explanation
Indices: 23893390--23893884 Score: 505
Period size: 159 Copynumber: 3.1 Consensus size: 155
23893380 CTGATTGGGG
23893390 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA-
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCT-AAG
* *
23893454 CCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTATGGATCC
65 CCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATC-ACCC-GTCCCCCCTGCGTGCTATGGATCC
*
23893519 TGCTATCATAACCCTCGGTCCAGTCCAAT
128 TGCTGTCATAACCCTCGGTCC-GTCCAAT
* * * * * *
23893548 CTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGCGCAGGCGCTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTAAG
* * * **
23893612 TCGGTCGAAGAGGTATAATGCGCAAGCCATGGATCAGCCCGGTCCCCCTCTGCGTGCTATCGG-T
65 CCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCA-CCC-GTCCCCC-CTGCGTGCTAT-GGAT
* * * * * ****
23893676 CCCGCTGCCACAACCCTCGATCCGGCTGGGG
126 CCTGCTGTCATAACCCTCGGTCCGTC-CAAT
* * * * *
23893707 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCTTACGGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTAAGC
* * * * *
23893772 CGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCTACCCGAT-CCCCCTGCGTGCTGTCGATCTT
66 CGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATC-ACCCG-TCCCCCCTGCGTGCTATGGATCCT
* * *
23893836 GCTGTCGTAACCCTCGGTCTGATTCAAT
129 GCTGTCATAACCCTCGGTCCG-TCCAAT
23893864 CTTAGAC-TGGGAATGAACTCC
1 CTTAGACAT-GGAATGAACTCC
23893885 AATGCTTAGA
Statistics
Matches: 268, Mismatches: 57, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
156 2 0.01
157 51 0.19
158 99 0.37
159 112 0.42
160 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTAAGC
CGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCACCCGTCCCCCCTGCGTGCTATGGATCCTGC
TGTCATAACCCTCGGTCCGTCCAAT
Found at i:23893766 original size:159 final size:157
Alignment explanation
Indices: 23893355--23893854 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 157
23893345 AACCCGCTGC
* *
23893355 CGGTCCTGCTGCCACAACCCTCGGTCTGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
1 CGGTCCTGCTGCCACAACCCTCGGTCCG-GTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* *
23893420 AGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA-CCGATCGGAGAGGTAGAATGCGCAAGCCGG
65 AGCCAACCCATGAAACGAGCGTGCGGGCGCT-AAGCCGGTCGGAGAGGTAGAATGCGCAAGCCAG
23893484 GGATCGACCCAGTCCCCCCTACGTGCTAT
129 GGATCGACCCAGTCCCCCCTACGTGCTAT
** * * **** * *
23893513 -GGATCCTGCTATCATAACCCTCGGTCCAGTCCAATCTTAGAC-TGGGAATGAACTTCGTATGCA
1 CGG-TCCTGCTGCCACAACCCTCGGTCCGGT-GGGGCTTAGACAT-GGAATGAACTCCGTATGCC
* * * * * * *
23893576 TAAGTCAACCCACGAAACGAGCGCGCAGGCGCTAAGTCGGTCGAAGAGGTATAATGCGCAAGCCA
63 TAAGCCAACCCATGAAACGAGCGTGCGGGCGCTAAGCCGGTCGGAGAGGTAGAATGCGCAAGCCA
* * *
23893641 TGGATC-AGCCCGGTCCCCCTCTGCGTGCTAT
128 GGGATCGA-CCCAGTCCCCC-CTACGTGCTAT
* * *
23893672 CGGTCCCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
1 CGGTCCTGCTGCCACAACCCTCGGTCCGG-TGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* * * * * * *
23893737 AGCCAACCCATGAAACGGGCTTACGGGCGCTTAGCCGGTCGGAGAGGCAGAATGCACAAGCCGGG
65 AGCCAACCCATGAAACGAGCGTGCGGGCGCTAAGCCGGTCGGAGAGGTAGAATGCGCAAGCCAGG
* * *
23893802 GATCTACCC-GAT-CCCCCTGCGTGCTGT
130 GATCGACCCAG-TCCCCCCTACGTGCTAT
* * * **
23893829 CGATCTTGCTGTCGTAACCCTCGGTC
1 CGGTCCTGCTGCCACAACCCTCGGTC
23893855 TGATTCAATC
Statistics
Matches: 271, Mismatches: 60, Indels: 23
0.77 0.17 0.06
Matches are distributed among these distances:
157 36 0.13
158 117 0.43
159 113 0.42
160 5 0.02
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
CGGTCCTGCTGCCACAACCCTCGGTCCGGTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
GCCAACCCATGAAACGAGCGTGCGGGCGCTAAGCCGGTCGGAGAGGTAGAATGCGCAAGCCAGGG
ATCGACCCAGTCCCCCCTACGTGCTAT
Found at i:23893915 original size:26 final size:25
Alignment explanation
Indices: 23893860--23893909 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
23893850 CGGTCTGATT
23893860 CAAT-CTTAGACTGGGAATGAACTC
1 CAATGCTTAGACTGGGAATGAACTC
23893884 CAATGCTTAGACTAGGG-ATGAACTC
1 CAATGCTTAGACT-GGGAATGAACTC
23893909 C
1 C
23893910 GTATGCCTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 4 0.17
25 17 0.71
26 3 0.12
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (25 bp):
CAATGCTTAGACTGGGAATGAACTC
Found at i:23894644 original size:26 final size:26
Alignment explanation
Indices: 23894606--23894658 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23894596 GGCTCAAAAT
23894606 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23894632 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23894658 C
1 C
23894659 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23894930 original size:159 final size:159
Alignment explanation
Indices: 23894632--23895128 Score: 531
Period size: 159 Copynumber: 3.1 Consensus size: 159
23894622 ACTCCGTATG
* * * * *
23894632 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGAGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGC
* * * *
23894697 CGGTCGGAGAGGTAGAATGCGCAAGTCGAGGATCGACCCGGT-CTCCCCCTACGTGTTGTTGATC
66 CGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCT-CCCCTACGTGCTGTCGATC
* * * * *
23894761 CTGCTACCACAAACCTTGGTCCGGTTCGAT
130 CTGCTGCCACAACCCTCGGTCCAGATCGAT
* * * *
23894791 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAG
* * * * * *
23894855 CCGATCGAAGAGGCATAATGCGCAAGTCGGGGATC-AGCCCGGTCCTCCTCTACGTGCTGCCGGT
65 CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGA-CCCGGTCCTCCCCTACGTGCTGTCGAT
* * * **
23894919 CCCGCTGCCACAACCCTCGGTCCAGCTGGGG
129 CCTGCTGCCACAACCCTCGGTCCAGATCGAT
* * *
23894950 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCTTACAGGCTCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTACAGGCGCTCAG
* ** * * *
23895014 CCGGCCGGAGAGGCAGAACACGCAAGTCGGGGTTCGACCCGATCC-CCCCTGCGTGCTGTCGATC
65 CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCTCCCCTACGTGCTGTCGATC
* *
23895078 CTGCTGCCGCAACCCTCGGT-CTGATCTGAT
130 CTGCTGCCACAACCCTCGGTCCAGATC-GAT
23895108 CTTAGAC-TGGGAATGAACTCC
1 CTTAGACAT-GGAATGAACTCC
23895129 AATGCTTAGA
Statistics
Matches: 276, Mismatches: 54, Indels: 17
0.80 0.16 0.05
Matches are distributed among these distances:
157 4 0.01
158 56 0.20
159 212 0.77
160 4 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCTCCCCTACGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCAGATCGAT
Found at i:23896226 original size:159 final size:158
Alignment explanation
Indices: 23896037--23896331 Score: 353
Period size: 159 Copynumber: 1.9 Consensus size: 158
23896027 CTGGGAATGA
* * * * *
23896037 ACTCCATATGCATAAGTCAACCCACAAAATGAGCGTGCGGGTGC-TGAGCCGACCGAAGAGGCAT
1 ACTCCATATGCATAAGCCAACCCACAAAATGAGCGTGCGGG-CCTTCAACCGACCGAAGAGGCAG
* * *
23896101 AATGCGC-AAGTCGGGGATCAGCTCGGTCCCCC-TCTACGTGCTGTCGGTCCCGCTGCCACAACC
65 AATGC-CTAAGTCGAGGATCAGCCCGGTCCCCCATCT--GTGCTGTCGATCCCGCTGCCACAACC
23896164 CTCGATCCGACTGGGGCTTAGACATGGAATAC
127 CTCGATCCGACTGGGGCTTAGACATGGAATAC
* * ** * *
23896196 ACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCCTTCAACCGACCGAAGAGGTAGA
1 ACTCCATATGCATAAGCCAACCCACAAAATGAGCGTGCGGGCCTTCAACCGACCGAAGAGGCAGA
* * * ** *
23896261 ATGCCTAAGTCGAGGATCGGCCCGGTCCCCCATGTGTGCTGTCGATCCTGCTGCCGTAAGCCTCG
66 ATGCCTAAGTCGAGGATCAGCCCGGTCCCCCATCTGTGCTGTCGATCCCGCTGCCACAACCCTCG
23896326 ATCCGA
131 ATCCGA
23896332 TCCAATCTTA
Statistics
Matches: 113, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
158 33 0.29
159 78 0.69
160 2 0.02
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.19
Consensus pattern (158 bp):
ACTCCATATGCATAAGCCAACCCACAAAATGAGCGTGCGGGCCTTCAACCGACCGAAGAGGCAGA
ATGCCTAAGTCGAGGATCAGCCCGGTCCCCCATCTGTGCTGTCGATCCCGCTGCCACAACCCTCG
ATCCGACTGGGGCTTAGACATGGAATAC
Found at i:23897097 original size:26 final size:26
Alignment explanation
Indices: 23897059--23897111 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23897049 GGCTCAAACT
*
23897059 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23897085 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23897111 C
1 C
23897112 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23897440 original size:159 final size:158
Alignment explanation
Indices: 23897087--23897546 Score: 408
Period size: 158 Copynumber: 2.9 Consensus size: 158
23897077 TCTGTATGCT
* * *
23897087 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAAGAGTGTGCGGGCGCTCAGCCG
** * * ***
23897152 GTCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCTTGC
66 ACCGAAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCCAC
* * * * *
23897217 TACCGCAACTCTCAGTTCGATCTGATCT
131 TACCACAACCCTCAGTTCGAGCTGAGCC
** ** * *
23897245 TAGAC-TGGGAATGAACTCCATATGCAAAAGTAAACCCACGAAAAGAGTGTGCGGGTGCTGAGCC
1 TAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAAAGAGTGTGCGGGCGCTCAGCC
* * * * *
23897309 GACCGAAAAGGCATAATGCGCAAGCTGGGGATTGGCCTGGTCCCCCTCTACGTG-T-TGCTGGTC
65 GACCGAAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTACGTGCTAT-C-GATC
* *
23897372 CCACTGCCACAACCCTCAGTTCG-GCTGGGGCC
127 CCACTACCACAACCCTCAGTTCGAGCT-GAGCC
* * * *
23897404 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAG-GCGTACGGGCACTCAGCC
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAA-AGAGTGTGCGGGCGCTCAGCC
* * * * * ** * * * * * * *
23897468 GACTGGAGAGGTAGAATGCACAAATCGGGAATCGGCCCGATCCCCTCTACGAGCTACCAATCCTA
65 GACCGAAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCCA
*
23897533 CTACCGCAACCCTC
130 CTACCACAACCCTC
23897547 GATCTGGTCT
Statistics
Matches: 234, Mismatches: 59, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
157 2 0.01
158 117 0.50
159 112 0.48
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.18
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAAGAGTGTGCGGGCGCTCAGCCG
ACCGAAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCCAC
TACCACAACCCTCAGTTCGAGCTGAGCC
Found at i:23897611 original size:26 final size:26
Alignment explanation
Indices: 23897560--23897612 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23897550 CTGGTCTGAT
*
23897560 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
23897586 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
23897612 C
1 C
23897613 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23903955 original size:26 final size:26
Alignment explanation
Indices: 23903926--23903981 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
23903916 CCGGTCTAAT
23903926 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
23903952 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23903978 CTTA
1 CTTA
23903982 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23905558 original size:159 final size:158
Alignment explanation
Indices: 23905211--23905583 Score: 383
Period size: 158 Copynumber: 2.4 Consensus size: 158
23905201 GATCTTAAAT
* *
23905211 TGGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGG
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAACGGTCGG
* * * * ** * *
23905276 AGATGTAGAATGTGCAAGCCAGAGATCAGCCCAGTACCCCCTGCATGCTGTCGATCTTGCTGCCG
66 AGAGGCAGAATGCGCAAGCCAGAGATCAGCCCAGTACCCCCTGCATGCTGCCGATCCCGCTACCA
* *
23905341 CAAACCTCAGTCCGGTCTGATCTTAGAT
131 CAAACCTCAGTCCGGTCTGAGCTTAGAA
* * * *
23905369 TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCG-TTAAGACGGTCG
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA-ACGGTCG
* * * * * * * *
23905433 GATAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCGCTAC
65 GAGAGGCAGAATGCGCAAGCCAGAGATCAGCCCAGTACCCC-CTGCATGCTGCCGATCCCGCTAC
* * * *
23905498 CACAATCCTCGGTCTGG-CTGGGGCTTAGACA
129 CACAAACCTCAGTCCGGTCT-GAGCTTAGA-A
* * * * * *
23905529 T-GGAATGAACCCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCTGGCGCTCA
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
23905584 GCCAACCGGA
Statistics
Matches: 172, Mismatches: 38, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
157 3 0.02
158 87 0.51
159 79 0.46
160 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAACGGTCGG
AGAGGCAGAATGCGCAAGCCAGAGATCAGCCCAGTACCCCCTGCATGCTGCCGATCCCGCTACCA
CAAACCTCAGTCCGGTCTGAGCTTAGAA
Found at i:23906263 original size:26 final size:26
Alignment explanation
Indices: 23906225--23906277 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23906215 GGCTCAAAAT
23906225 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
23906251 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACCCCGTATG
23906277 C
1 C
23906278 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:23906539 original size:158 final size:158
Alignment explanation
Indices: 23906260--23906910 Score: 435
Period size: 158 Copynumber: 4.1 Consensus size: 158
23906250 GCTTAGACAT
* * ** * * * * *
23906260 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCTGCCGGAG
1 GGAATGAAATCCGTATGCATAAGTTAACCCACGAAACGAGCGTGTGGGCGCTGAGACTGCCGAAG
** * * * *
23906325 AGGTAGAATGCATAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCAATCCTGCTGCCA-C
66 AGACAGAATGCACAAGCCGGGGATCGACCCGGACCCCCCTACGTGCTGTCAATCCTGCTG-CAGC
* *
23906389 AACCCTCGGTCTGGTTTGATCTTAGATTG
130 AACCCTCGGTCCGGTCTGATCTTAGATTG
*
23906418 GGAATGAAATCCGTATGCATAAGTTAACCCACGAAACGAGCATGTGGGCGCTGAGAC-GACCGAA
1 GGAATGAAATCCGTATGCATAAGTTAACCCACGAAACGAGCGTGTGGGCGCTGAGACTG-CCGAA
* * * *
23906482 GAGACAGAATGCGCAAGCCGGGGATC-AGCCC-GACCCCACCTACGTGCTGTCGATCCTGTTGTA
65 GAGACAGAATGCACAAGCCGGGGATCGA-CCCGGACCCC-CCTACGTGCTGTCAATCCTGCTGCA
23906545 GCAACCCTCGGTCCGGTCTGATCTTAGATTG
128 GCAACCCTCGGTCCGGTCTGATCTTAGATTG
* * * * * *
23906576 GGAATGAAATCCATATGCATAAGTTAACCTACGAAACAAGCGTCTGGGCGTTGAG-CTAGCCAAA
1 GGAATGAAATCCGTATGCATAAGTTAACCCACGAAACGAGCGTGTGGGCGCTGAGACT-GCCGAA
* * ** * * * * * * * *
23906640 GAGGCATAATGCGTAAGTCGAGGATCGGCTCGGTCCCCCTCTACATGCT-TCCAGTCCCGCTGCC
65 GAGACAGAATGCACAAGCCGGGGATCGACCCGGACCCCC-CTACGTGCTGT-CAATCCTGCTG-C
* * ** *
23906704 A-CAACCCTCAGTCTGG-CTGGGGCTTAGACAT-
127 AGCAACCCTCGGTCCGGTCT-GATCTTAGA-TTG
* * * ** * * * * * * *
23906735 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GACGTGCGGGTGCTCAGCCGGCCGGA
1 GGAATGAAATCCGTATGCATAAGTTAACCCACGAAACGAG-CGTGTGGGCGCTGAGACTGCCGAA
* ** * * * ** * *
23906799 GAGGCAGAATGCGTAAGCTGGGGATCGACCC-GATCCTCCCTGCGTGCTACCGATCCTGCTATCA
65 GAGACAGAATGCACAAGCCGGGGATCGACCCGGA-CCCCCCTACGTGCTGTCAATCCTGCT-GCA
** * * *
23906863 -CAACCCTCAATTCGGTCTGATCTTAGACTA
128 GCAACCCTCGGTCCGGTCTGATCTTAGATTG
* *
23906893 GGAATGAACTCCATATGC
1 GGAATGAAATCCGTATGC
23906911 CTAGACTGGG
Statistics
Matches: 387, Mismatches: 86, Indels: 40
0.75 0.17 0.08
Matches are distributed among these distances:
157 10 0.03
158 258 0.67
159 116 0.30
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GGAATGAAATCCGTATGCATAAGTTAACCCACGAAACGAGCGTGTGGGCGCTGAGACTGCCGAAG
AGACAGAATGCACAAGCCGGGGATCGACCCGGACCCCCCTACGTGCTGTCAATCCTGCTGCAGCA
ACCCTCGGTCCGGTCTGATCTTAGATTG
Found at i:23906925 original size:26 final size:26
Alignment explanation
Indices: 23906886--23906965 Score: 124
Period size: 26 Copynumber: 3.1 Consensus size: 26
23906876 GGTCTGATCT
* * *
23906886 TAGACTAGGAATGAACTCCATATGCC
1 TAGACTGGGGATGAACTCCGTATGCC
*
23906912 TAGACTGGGGATGAACTCCGTATGCT
1 TAGACTGGGGATGAACTCCGTATGCC
23906938 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGGATGAACTCCGTATGCC
23906964 TA
1 TA
23906966 AGTCAACCCA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
TAGACTGGGGATGAACTCCGTATGCC
Found at i:23907671 original size:26 final size:26
Alignment explanation
Indices: 23907633--23907686 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
23907623 GGCTCAAAAT
** *
23907633 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
23907659 CTTAGACAT-GGAATAAACTCCATATG
1 CTTAGAC-TGGGAATAAACTCCATATG
23907685 CT
1 CT
23907687 GAAGCCAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:23913227 original size:26 final size:26
Alignment explanation
Indices: 23913189--23913241 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23913179 GGCTCAAAAT
23913189 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23913215 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23913241 C
1 C
23913242 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23913810 original size:158 final size:158
Alignment explanation
Indices: 23913215--23914662 Score: 1153
Period size: 158 Copynumber: 9.2 Consensus size: 158
23913205 ACTCCGTATG
* *
23913215 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
23913280 CGGCCGGAGGGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTTCGTGCTGTCAATCC
66 CGGCCGAAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCC
*
23913344 TGCTGCCACAACCCTCAATCTGG-TCTGAT
130 TGCTGCCACAACCCTCGATCTGGCTC-GAT
* * * * *
23913373 CTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * ** * * *
23913437 CCGACCGAAGAGGCATAATGCACAAGCCGGGGATTGGCCCGGTCTGCCTCTGCATGCTATCGGT-
65 CCGGCCGAAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATC
* * * **
23913501 CTCGCTGCCACAACCATCGATCCGGCTAGGG
129 CT-GCTGCCACAACCCTCGATCTGGCTCGAT
* * * *
23913532 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTAAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** * *
23913597 CGGTC-AGAGAGGTAGAATACGTAAGCCGAGGATCAACCCGGTCCCCC-CTGCGTGCTGTCAATC
66 CGGCCGA-AGAGGCAGAATGCGCAAGCCG-GGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATC
* * * *
23913660 CTACTGCCGCAACCCTCGGTCTGGTTCGAT
129 CTGCTGCCACAACCCTCGATCTGGCTCGAT
* * * *
23913690 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCAGGTGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
23913753 CCGGCCGAATAGGCATAATTCGTAAGCCGGGTATCGGCCCGATCCCCCTCTGTGTGCTGTCGATC
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGG-ATCGGCCCGATCCCCCTCTGCGTGCTGTCGATC
*** * * * * **
23913818 CCATTACCACAACCCTCAATCTAGCTGGGG
129 CTGCTGCCACAACCCTCGATCTGGCTCGAT
* * * * *
23913848 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
23913913 CAGTCGAAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCGATCCCCCT-TGCGTGCTGTCGATCC
66 CGGCCGAAGAGGCAGAATGCGCAAGCCG-GGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCC
** * * *
23913977 TGCTGCCTTAAGCCTC-AGT-TCGATCTGAT
130 TGCTGCCACAACCCTCGA-TCTGGCTC-GAT
* * * * * * *
23914006 CTTAGAC-TAGAAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTACGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * * * *
23914070 CTGGCCGAAGAGGCATAATGCAAAAGCCGAGGATTGGCCTGGTCCCCCTCTGCGTGTTGTCGGTC
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCG-GGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATC
** * * **
23914135 CCACTGCCACAACCCTCGATCCGGCTGGGG
129 CTGCTGCCACAACCCTCGATCTGGCTCGAT
* * *
23914165 CTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
23914230 CGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACTCGAT-CCCC-CTACGTGCTGTCGATCC
66 CGGCCGAAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCC
* ** ** * *
23914293 TACTATCGTAACCCTCGGTCCGG-TCTGAT
130 TGCTGCCACAACCCTCGATCTGGCTC-GAT
* * * * * * * *
23914322 CTTAGA-TTGAGAATGAACTCCATATGCAT-AGTCAACCCATGAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
23914385 CCGACCGAAGAGGCATAAT-CGCAAGCCAGGGATCGACTCGGTCCACC-CTGTGTGCTGCCGGT-
65 CCGGCCGAAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATC
* ** * * **
23914447 CTCGCTGCCACAACCCTTGATCCAGATGGGG
129 CT-GCTGCCACAACCCTCGATCTGGCTCGAT
* * * *
23914478 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCAG-TCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-GCTCAG
* * * *
23914542 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCC-CTGCGTGCTGCCAATC
65 CCGGCCGAAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATC
* * * * * *
23914606 TTGCTGCCGCAACCCTAAGTTCAGTC-CGAT
129 CTGCTGCCACAACCCT-CGATCTGGCTCGAT
*
23914636 CTTAGA-TTGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
23914663 TTAGATTGGG
Statistics
Matches: 1005, Mismatches: 250, Indels: 70
0.76 0.19 0.05
Matches are distributed among these distances:
155 23 0.02
156 99 0.10
157 167 0.17
158 412 0.41
159 295 0.29
160 9 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGAAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGATCTGGCTCGAT
Found at i:23914203 original size:317 final size:316
Alignment explanation
Indices: 23913214--23914662 Score: 1696
Period size: 317 Copynumber: 4.6 Consensus size: 316
23913204 AACTCCGTAT
* * * * *
23913214 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
* * *
23913279 CCGGCCGGAGGGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTTCGTGCTGTCAATCC
66 CCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
* * *
23913344 TGCTGCCACAACCCTCA-ATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCA
131 TGCTGCCGCAACCCTCAGTTC-GATCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCA
* *
23913408 ACCCACGAAACGAGTGTGCGGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCCGGGGATTG
195 ACCCACGAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATGCA-AAGCCGAGGATTG
** * * * * * * *
23913473 GCCCGGTCTGCCTCTGCATGCTATCGGTCTCGCTGCCACAACCATCGATCCGGCTAGG
259 GCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCACTGCCACAACCCTCGATCCAGCTGGG
* * *
23913531 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTAAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
* * * * ** *
23913596 CCGGTCAGAGAGGTAGAATACGTAAGCCGAGGATCAACCCGGTCCCCCCTGCGTGCTGTCAATCC
66 CCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
* * * * * *
23913661 TACTGCCGCAACCCTCGGTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CA
131 TGCTGCCGCAACCCTCAGT-TCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCA
* *** * * * * *
23913724 ACCCACGAAACGAGCGTGCAGGTGTTGAGCCGGCCGAATAGGCATAATTCGTAAGCCG-GGTATC
195 ACCCACGAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATGC-AAAGCCGAGG-ATT
* * * * * * *
23913788 GGCCCGATCCCCCTCTGTGTGCTGTCGATCCCATTACCACAACCCTCAATCTAGCTGGG
258 GGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCACTGCCACAACCCTCGATCCAGCTGGG
* *
23913847 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
* * * * * * *
23913912 CCAGTCGAAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATCC
66 CCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
** * *
23913977 TGCTGCCTTAAGCCTCAGTTCGATCTGATCTTAGACTAGAAATGAACTCCGTATGCATAAGTCAA
131 TGCTGCCGCAACCCTCAGTTCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAA
* * * *
23914042 CCCACGAAACAAGCGTACGGGCACTGAGCTGGCCGAAGAGGCATAATGCAAAAGCCGAGGATTGG
196 CCCACGAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATGC-AAAGCCGAGGATTGG
* * *
23914107 CCTGGTCCCCCTCTGCGTGTTGTCGGTCCCACTGCCACAACCCTCGATCCGGCTGGG
260 CCCGGTCCCCCTCTGCGTGCTGTCGGTCCCACTGCCACAACCCTCGATCCAGCTGGG
* *
23914164 GCTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
* * * *
23914229 CCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACTCGAT-CCCCCTACGTGCTGTCGATCC
66 CCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
* ** * * * * * *
23914293 TACTATCGTAACCCTCGGTCCGGTCTGATCTTAGA-TTGAGAATGAACTCCATATGCAT-AGTCA
131 TGCTGCCGCAACCCTCAGTTCGATCTGATCTTAGACTAG-GAATGAACTCCGTATGCATAAGTCA
* * ** *
23914356 ACCCATGAAATGAGCGTGCGGGTGCTGAGCCGACCGAAGAGGCATAATCGC-AAGCC-AGGGATC
195 ACCCACGAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAAT-GCAAAGCCGA-GGATT
* * * * * * * * *
23914419 GACTCGGTCCACC-CTGTGTGCTGCCGGTCTCGCTGCCACAACCCTTGATCCAGATGGG
258 GGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCACTGCCACAACCCTCGATCCAGCTGGG
* * *
23914477 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCAGTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
* * * * *
23914542 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGCCAATCT
66 CCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
* * * *
23914607 TGCTGCCGCAACCCTAAGTTC-AGTCCGATCTTAGATTGGGAATGAACTCCGTATGC
131 TGCTGCCGCAACCCTCAGTTCGA-TCTGATCTTAGACTAGGAATGAACTCCGTATGC
23914663 TTAGATTGGG
Statistics
Matches: 950, Mismatches: 169, Indels: 29
0.83 0.15 0.03
Matches are distributed among these distances:
313 136 0.14
314 76 0.08
315 55 0.06
316 319 0.34
317 358 0.38
318 5 0.01
319 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
CCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
TGCTGCCGCAACCCTCAGTTCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAA
CCCACGAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATGCAAAGCCGAGGATTGGC
CCGGTCCCCCTCTGCGTGCTGTCGGTCCCACTGCCACAACCCTCGATCCAGCTGGG
Found at i:23914665 original size:26 final size:26
Alignment explanation
Indices: 23914636--23914688 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23914626 TCAGTCCGAT
23914636 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
23914662 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
23914688 C
1 C
23914689 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:23915449 original size:159 final size:156
Alignment explanation
Indices: 23915026--23915459 Score: 441
Period size: 159 Copynumber: 2.8 Consensus size: 156
23915016 AACTCTGTAT
*
23915026 GCTTAGACATGGAATGAA---CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
1 GCTTAGACATGGAATGAATCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * *
23915088 CGGTCGGAGAGGCAGAATGCGTAAGATGGGCATCGGCCCGAT-CCCCCTACATGCTATCAATCCT
66 CGGTCGAAGAGGCAGAATGCGCAAGCCGGG-ATCGGCCCGATCCCCCCTACGTGCTACCAATCCC
23915152 GCTACCACAACCCTCAGTCCGGTCTGA
130 GCTACCACAACCCTCAGTCCGGTCTGA
* * * * * * * *
23915179 TCTCATAC-TAGGAATGAATGCCGTATGCCTAAGTCAACTCACGAAACAAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAAT-CCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
23915243 ACCGGTCGAAGAGGCATAATACGCAAGCCGGGGATTGGCCCGATCCCCCTCTACGTGCTACCGAT
64 GCCGGTCGAAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGATCCCCC-CTACGTGCTACCAAT
* * *
23915308 CCCGCTGCCACAACCCTCGGTCCGGT-TGGG
127 CCCGCTACCACAACCCTCAGTCCGGTCT-GA
* * * * *
23915338 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGGTCCCTCAG
1 GCTTAGACATGGAATGAA-TCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
23915403 CTGGTCAAAGAGGCAGAATGCGCAAGCCGGAGATCGGTCC-AGTCCCCCCTGCGTGCT
65 CCGGTCGAAGAGGCAGAATGCGCAAGCCGG-GATCGGCCCGA-TCCCCCCTACGTGCT
23915460 GTCGAGCTTG
Statistics
Matches: 223, Mismatches: 45, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
152 1 0.00
153 13 0.06
157 68 0.30
158 19 0.09
159 120 0.54
160 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAATCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGAAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGATCCCCCCTACGTGCTACCAATCCCG
CTACCACAACCCTCAGTCCGGTCTGA
Found at i:23915523 original size:158 final size:158
Alignment explanation
Indices: 23915045--23915523 Score: 387
Period size: 159 Copynumber: 3.0 Consensus size: 158
23915035 TGGAATGAAC
* * * ** * ** * *
23915045 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGGTCGGAGAGGCAGAATGCGT
1 TATGCCTAAGCCAACCCACAAAACAAGCATGCGGGCCCTCAACCGGTCAAAGAGGCAGAATACGC
** * * * * * * * *
23915110 AAGATGG-GCATCGGCCCGAT-CCCC-CTACATGCTATCAATCCTGCTACCACAACCCTCAGTCC
66 AAGCCGGAG-ATCGGCCAGATCCCCCTCTACGTGCTACCGAGCCCGCTGCCACAACCCTCGGTCC
* *
23915172 GGTCTGATCTCATACTAGGAATGAA-TGCCG
130 GGTCTGATCTTAGACT-GGAATGAACT-CCG
* * * * * * * *
23915202 TATGCCTAAGTCAACTCACGAAACAAGCGTGCGGGCGCTGAACCGGTCGAAGAGGCATAATACGC
1 TATGCCTAAGCCAACCCACAAAACAAGCATGCGGGCCCTCAACCGGTCAAAGAGGCAGAATACGC
* * * *
23915267 AAGCCGGGGATTGGCCCGATCCCCCTCTACGTGCTACCGATCCCGCTGCCACAACCCTCGGTCCG
66 AAGCCGGAGATCGGCCAGATCCCCCTCTACGTGCTACCGAGCCCGCTGCCACAACCCTCGGTCCG
** *
23915332 GT-TGGGGCTTAGACATGGAATGAACTCCC
131 GTCT-GATCTTAGAC-TGGAATGAACTCCG
** * * * *
23915361 TATGCCTAAGCCAACCCACAAAACGGGCATGCGGTCCCTCAGCTGGTCAAAGAGGCAGAATGCGC
1 TATGCCTAAGCCAACCCACAAAACAAGCATGCGGGCCCTCAACCGGTCAAAGAGGCAGAATACGC
* ** ** * *
23915426 AAGCCGGAGATCGGTCCAG-TCCCCC-CTGCGTGCTGTCGAGCTTGCTGTCGCAACCCTCGGTCC
66 AAGCCGGAGATCGG-CCAGATCCCCCTCTACGTGCTACCGAGCCCGCTGCCACAACCCTCGGTCC
*
23915489 AGTCTGATCTTAGACTGGGAATGAACTCCG
130 GGTCTGATCTTAGACT-GGAATGAACTCCG
23915519 TATGC
1 TATGC
23915524 TTAGACTGGG
Statistics
Matches: 260, Mismatches: 53, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
157 71 0.27
158 63 0.24
159 121 0.47
160 5 0.02
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.19
Consensus pattern (158 bp):
TATGCCTAAGCCAACCCACAAAACAAGCATGCGGGCCCTCAACCGGTCAAAGAGGCAGAATACGC
AAGCCGGAGATCGGCCAGATCCCCCTCTACGTGCTACCGAGCCCGCTGCCACAACCCTCGGTCCG
GTCTGATCTTAGACTGGAATGAACTCCG
Found at i:23915533 original size:26 final size:26
Alignment explanation
Indices: 23915497--23915573 Score: 127
Period size: 26 Copynumber: 3.0 Consensus size: 26
23915487 CCAGTCTGAT
23915497 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23915523 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
23915549 CTTAGACTGGGGATAAACTTCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
23915574 TCCTAAGTCA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23916054 original size:159 final size:157
Alignment explanation
Indices: 23915760--23916262 Score: 500
Period size: 159 Copynumber: 3.2 Consensus size: 157
23915750 ACTCCATATA
* * *
23915760 CTTAGACATGGAATGAAC-CCTATATGCCTAAGCCAACCCACGAAAGGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGAATGAACTCC-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
23915824 CCGGTCGGAGAGGTAGAAAGCACAAGCCGGGGATTGACCCGATCCCCCCCCGCGTGCTGT-GGAT
64 CCGGTCGGAGAGGCAGAATGCGCAAGCC-GGGATTGGCCCGAT-CCCCCCTGCGTGCTGTCGG-T
* ** *
23915888 CTTGCTGCTGCAACCCTTGGTCCGGTCT-GAT
126 CCTGCTGCCACAACCCTCGGTCCGGTCTAGAT
** * * *
23915919 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACAAAACGAGCGTGCGGGCACTGAAC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * *
23915984 CGGCCGAAAAGGCATAATGCGCAAGCCAGGGATTGGCCCGATCCCCCTCTGCGTGCTGTCGGTCC
65 CGGTCGGAGAGGCAGAATGCGCAAGCC-GGGATTGGCCCGATCCCCC-CTGCGTGCTGTCGGTCC
* * **
23916049 CGCTGCCACAACCCTCGGTCCAG-CTAGGG
128 TGCTGCCACAACCCTCGGTCCGGTCTAGAT
* * * *
23916078 CTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGC
1 CTTAG-ACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * *
23916143 CGATCGGAGAGGCAGAATGCGCAAGTCGAGATTCAGCCCGATCCCCCCTGCGTG-T-TACTGATC
65 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGATT-GGCCCGATCCCCCCTGCGTGCTGT-C-GGTC
*
23916206 CTGCTGCCACAACCCTCGGAT-CGGT-TCGAT
127 CTGCTGCCACAACCCTCGG-TCCGGTCTAGAT
*
23916236 CTTAGACTAGGAATGAACTTCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
23916263 TTAGACTGAG
Statistics
Matches: 280, Mismatches: 52, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
156 1 0.00
157 4 0.01
158 66 0.24
159 203 0.73
160 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
GGTCGGAGAGGCAGAATGCGCAAGCCGGGATTGGCCCGATCCCCCCTGCGTGCTGTCGGTCCTGC
TGCCACAACCCTCGGTCCGGTCTAGAT
Found at i:23916265 original size:26 final size:26
Alignment explanation
Indices: 23916236--23916288 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23916226 TCGGTTCGAT
*
23916236 CTTAGACT-AGGAATGAACTTCGTATG
1 CTTAGACTGA-GAATGAACTCCGTATG
23916262 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
23916288 C
1 C
23916289 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:23916607 original size:26 final size:26
Alignment explanation
Indices: 23916576--23916627 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23916566 CCGGTCTGAT
23916576 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
23916602 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23916628 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23924497 original size:26 final size:26
Alignment explanation
Indices: 23924461--23924513 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23924451 CCGATCCGAT
*
23924461 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23924487 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23924513 C
1 C
23924514 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23925024 original size:26 final size:26
Alignment explanation
Indices: 23924988--23925041 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
23924978 CCGATCCGAT
23924988 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
23925014 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
23925040 CT
1 CT
23925042 GGGTCAACCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:23926250 original size:26 final size:26
Alignment explanation
Indices: 23926221--23926273 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23926211 CCGGTCTGAT
*
23926221 CTTAGACTATGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
23926247 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
23926273 C
1 C
23926274 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:23926976 original size:159 final size:157
Alignment explanation
Indices: 23926797--23927306 Score: 415
Period size: 158 Copynumber: 3.2 Consensus size: 157
23926787 TTAGACTAAA
* * *
23926797 AATGAACTCTGCATGCCTAAGTCAACCCACGAAAACAAGCATGTGAGTGCTGAGCCGACCGAAGA
1 AATGAACTCCGTATGCCTAAGTCAACCCACG-AAACGAGCATGTGAGTGCTGAGCCGACCGAAGA
*
23926862 GGCATAATGCACAAGTCGGGGATCGGCCCGATCCCCTCCGCGTGCTGCCGGTCCCGCTACCACAA
65 GGCATAATG-ACAAGTCGAGGATCGGCCCGATCCCCTCCGCGTGCTGCCGGTCCCGCTACCACAA
** *
23926927 CCCTTGGTCAGACTGGGGCTTAGACATTG
129 CCCTCAGTCAGACTGGGGCTTAGACATGG
* * * * * * *
23926956 AATGAACTCCGTATGCCTAAG-CGAACCAATGAAATGAGCATGCGGGTGCTCAGCCGGCCGGAA-
1 AATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGCATGTGAGTGCTGAGCCGACC-GAAG
** * * * * * * * * *
23927019 AGGCCGAATGAGTAAGCCGAGGATCGGTCCGATCCCCCCCTACGTGCTGTCGATCCTGCTACCGC
64 AGGCATAATGA-CAAGTCGAGGATCGGCCCGATCCCCTCC-GCGTGCTGCCGGTCCCGCTACCAC
* * * **
23927084 AACCCCCAGTCCGGTCT-GATCTTAGAC-TGGG
127 AACCCTCAGT-CAGACTGGGGCTTAGACAT-GG
* * * * *
23927115 AATGAACTCCATATACCTAAGTCAACCCACGAAACGAG--TGTGCAGACGCTGAGCCAATCGAAG
1 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGTG-AG-TGCTGAGCCGACCGAAG
* * * ** * ** **
23927178 AGGCATAATGTGCAAGTCGAGAAT-TGCCCGATCCCCCTTTGCGTGCTACCGGTCCCATTGTCAC
64 AGGCATAATG-ACAAGTCGAGGATCGGCCCGAT-CCCCTCCGCGTGCTGCCGGTCCCGCTACCAC
*
23927242 AACCCTCAGTCCGACTGGGGCTTAGACATGG
127 AACCCTCAGTCAGACTGGGGCTTAGACATGG
* *
23927273 AAT-AATCTCCCTATGCCTAAGCCAACCCACGAAA
1 AATGAA-CTCCGTATGCCTAAGTCAACCCACGAAA
23927307 TGGGCGTGCG
Statistics
Matches: 265, Mismatches: 71, Indels: 31
0.72 0.19 0.08
Matches are distributed among these distances:
157 10 0.04
158 126 0.48
159 124 0.47
160 5 0.02
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.19
Consensus pattern (157 bp):
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGTGAGTGCTGAGCCGACCGAAGAG
GCATAATGACAAGTCGAGGATCGGCCCGATCCCCTCCGCGTGCTGCCGGTCCCGCTACCACAACC
CTCAGTCAGACTGGGGCTTAGACATGG
Found at i:23927260 original size:317 final size:313
Alignment explanation
Indices: 23926628--23927439 Score: 889
Period size: 317 Copynumber: 2.6 Consensus size: 313
23926618 AACTCTGTAT
* * *
23926628 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCATGAAACGAGCGTGCGAGTGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCATGAAATGAGCGTGCGGGTGCTCAG
* ** * * * *
23926693 TCGATCGGAAAGGCAGAATGCATAAGCTGGGGATCGGCCCGTCCCCCTTGCATGCTATCGATCCT
66 CCGGCCGGAAAGGCAGAATGCATAAGCCGGGGATCGGCCCGTCCCCCCTACGTGCTATCGATCCT
* *** ** *
23926758 AC-CGCCATAACCCTCGGTCCGGTCTGATCTTAGACTAAAAATGAACTCTGCATGCCTAAGTCAA
131 GCTC-CC--AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCACATACCTAAGTCAA
* * * *
23926822 CCCACGAAAACAAGCATGTGAGTGCTGAGCCGACCGAAGAGGCATAATGCACAAGTCGGGGATCG
193 CCCACGAAAACAAG-ATGTGAGCGCTGAGCCAACCGAAGAGGCATAATGCACAAGTCGAGAATCG
* * **
23926887 GCCCGATCCCCTCCGCGTGCTGCCGGTCCCGCTACCACAACCCTTGGTCAGACTGGG
257 GCCCGATCCCCTCCGCGTGCTACCGGTCCCACTACCACAACCCTCAGTCAGACTGGG
* * * *
23926944 GCTTAGACATTGAATGAACTCCGTATGCCTAAGCGAACCAATGAAATGAGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCATGAAATGAGCGTGCGGGTGCTCAG
* * * *
23927009 CCGGCCGGAAAGGCCGAATG-AGTAAGCCGAGGATCGGTCCGATCCCCCCCTACGTGCTGTCGAT
66 CCGGCCGGAAAGGCAGAATGCA-TAAGCCGGGGATCGGCCCG-T-CCCCCCTACGTGCTATCGAT
* * *
23927073 CCTGCTACCGCAACCCCCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATACCTAAGTC
128 CCTGCT-CC-CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCACATACCTAAGTC
* * **
23927138 AACCCACG-AAACGAG-TGTGCAGACGCTGAGCCAATCGAAGAGGCATAATGTGCAAGTCGAGAA
191 AACCCACGAAAACAAGATGTG-AG-CGCTGAGCCAACCGAAGAGGCATAATGCACAAGTCGAGAA
* ** * ** *
23927201 T-TGCCCGATCCCCCTTTGCGTGCTACCGGTCCCATTGTCACAACCCTCAGTCCGACTGGG
254 TCGGCCCGAT-CCCCTCCGCGTGCTACCGGTCCCACTACCACAACCCTCAGTCAGACTGGG
* * * * *
23927261 GCTTAGACATGGAAT-AATCTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAA-CTCCGTATGCCTAAGCAAACCCATGAAATGAGCGTGCGGGTGCTCA
* ** * *
23927325 GCCAGCCATAGAGGCAGAATGCATAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATC
65 GCCGGCCGGAAAGGCAGAATGCATAAGCCGGGGATCGGCCC-GTCCCCCCTACGTGCTATCGATC
* * * * *
23927390 CTGCGTCCCAACCCTTGGTCAGATCCGATCTTAGATTGGGAATGAACTCC
129 CTGC-TCCCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
23927440 GTATGCTTGG
Statistics
Matches: 412, Mismatches: 71, Indels: 27
0.81 0.14 0.05
Matches are distributed among these distances:
315 40 0.10
316 127 0.31
317 167 0.41
318 75 0.18
319 1 0.00
320 2 0.00
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.19
Consensus pattern (313 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCATGAAATGAGCGTGCGGGTGCTCAG
CCGGCCGGAAAGGCAGAATGCATAAGCCGGGGATCGGCCCGTCCCCCCTACGTGCTATCGATCCT
GCTCCCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCACATACCTAAGTCAACCC
ACGAAAACAAGATGTGAGCGCTGAGCCAACCGAAGAGGCATAATGCACAAGTCGAGAATCGGCCC
GATCCCCTCCGCGTGCTACCGGTCCCACTACCACAACCCTCAGTCAGACTGGG
Found at i:23927381 original size:158 final size:157
Alignment explanation
Indices: 23926858--23927383 Score: 427
Period size: 158 Copynumber: 3.3 Consensus size: 157
23926848 GAGCCGACCG
* * * *
23926858 AAGAGGCATAATGCACAAGTCGGGGATCGGCCCGATCCCCTCC-GCGTGCTGCCGGTCCCGCTAC
1 AAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCC-CCTACGTGCTACCGGTCCCGCTAC
** * * * * * *
23926922 CACAACCCTTGGTCAGACTGGGGCTTAGACATTGAATGAACTCCGTATGCCTAAGCGAACCAATG
65 CACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACG
* * *
23926987 AAATGAGCATGCGGGTGCTCAGCCGGCC
130 AAATGAGCGTGCGGGCGCTCAGCCAGCC
* * * * ** * *
23927015 GGAA-AGGCCGAATG-AGTAAGCCGAGGATCGGTCCGATCCCCCCCTACGTGCTGTCGATCCTGC
1 --AAGAGGCAGAATGCA-CAAGTCGAGGATCGGCCCGAT-CCCCCCTACGTGCTACCGGTCCCGC
* * * ** * *
23927078 TACCGCAACCCCCAGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCATATACCTAAGTCAAC
62 TACCACAACCCTCAGTCC-GACTGGGGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAAC
* * * * * * *
23927141 CCACGAAACGAGTGTGCAGACGCTGAGCCAATCG
125 CCACGAAATGAGCGTGCGGGCGCTCAGCC-AGCC
* ** * * * * ** **
23927175 AAGAGGCATAATGTGCAAGTCGAGAAT-TGCCCGATCCCCCTTTGCGTGCTACCGGTCCCATTGT
1 AAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCCC-CTACGTGCTACCGGTCCCGCTAC
*
23927239 CACAACCCTCAGTCCGACTGGGGCTTAGACATGGAAT-AATCTCCCTATGCCTAAGCCAACCCAC
65 CACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAA-CTCCATATGCCTAAGCCAACCCAC
*
23927303 GAAATGGGCGTGCGGGCGCTCAGCCAGCC
129 GAAATGAGCGTGCGGGCGCTCAGCCAGCC
* * *
23927332 ATAGAGGCAGAATGCATAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTA
1 A-AGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCCCCTACGTGCTA
23927384 TCGATCCTGC
Statistics
Matches: 274, Mismatches: 79, Indels: 29
0.72 0.21 0.08
Matches are distributed among these distances:
157 14 0.05
158 143 0.52
159 113 0.41
160 4 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (157 bp):
AAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCCCCTACGTGCTACCGGTCCCGCTACC
ACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGA
AATGAGCGTGCGGGCGCTCAGCCAGCC
Found at i:23928465 original size:25 final size:26
Alignment explanation
Indices: 23928431--23928482 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
23928421 CTGGTCCGAT
23928431 CTTAGACTGGGAATGAA-ATCGTATG
1 CTTAGACTGGGAATGAACATCGTATG
* *
23928456 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACATCGTATG
23928482 C
1 C
23928483 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACATCGTATG
Found at i:23929014 original size:112 final size:112
Alignment explanation
Indices: 23928796--23929001 Score: 252
Period size: 112 Copynumber: 1.8 Consensus size: 112
23928786 GTCTGATCTG
* * * * *
23928796 ATCTTAGACTGGGAATGAACTTCGTATGCCCAAGCCAACCCATGAAACGAGCGTGCGGGTGTTCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCACAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCA
* * ** *
23928861 ACCAGCCGGAGAGGTGGAATGCACAAGCCGAGGATTGGCCCGATCCA
66 ACCAGCCGAAAAGGCAGAATGCAAAAGCCGAGGATTGGCCCGATCCA
* * * *
23928908 ATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCCTGAAAAGAGCGTGCGGGCGCTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCACAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCA
* *
23928973 GCC-GACCGAAAAGGCATAATGCAAAAGCC
66 ACCAG-CCGAAAAGGCAGAATGCAAAAGCC
23929002 AGGGATGAGC
Statistics
Matches: 77, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
111 1 0.01
112 76 0.99
ACGTcount: A:0.30, C:0.25, G:0.28, T:0.17
Consensus pattern (112 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCACAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCA
ACCAGCCGAAAAGGCAGAATGCAAAAGCCGAGGATTGGCCCGATCCA
Found at i:23929262 original size:26 final size:26
Alignment explanation
Indices: 23929226--23929278 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23929216 CCAGCCCGAT
23929226 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
23929252 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
23929278 C
1 C
23929279 CTAAGTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:23929963 original size:26 final size:26
Alignment explanation
Indices: 23929921--23929973 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23929911 GGCTCAAAAT
* *
23929921 CTTAGACTGGGAGTGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23929947 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23929973 C
1 C
23929974 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23930644 original size:26 final size:26
Alignment explanation
Indices: 23930615--23930675 Score: 106
Period size: 26 Copynumber: 2.3 Consensus size: 26
23930605 CCAGTCCGAT
23930615 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
23930641 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
23930667 CTTAGACTG
1 CTTAGACTG
23930676 AAACTCCGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
25 1 0.03
26 31 0.94
27 1 0.03
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Done.