Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 239 of 402
Found at i:23931163 original size:26 final size:26
Alignment explanation
Indices: 23931134--23931185 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23931124 CGATCTGATA
23931134 TTAGACTGGGAATGAACTCCGCATGC
1 TTAGACTGGGAATGAACTCCGCATGC
* *
23931160 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGCATGC
23931186 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGCATGC
Found at i:23931670 original size:159 final size:157
Alignment explanation
Indices: 23931452--23931858 Score: 399
Period size: 157 Copynumber: 2.6 Consensus size: 157
23931442 CTTATTGCCG
* * * * * *
23931452 CAACCCTCGATCT-GGTCTGATCTTATACTGGAAATGGACTCCGTATGCCTAAGTCAACCCATGA
1 CAACCCTCGGTCTAGG-CTGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * ** * **
23931516 AAC-GAGCATACGGGTGCTGAGCCGATTGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGAT
65 AACAG-GCATACGGGCGCTCAGCCGATCAGAGAGGCAGAATGCGCAAG-CCAGGATCGGCCCGAT
** * *
23931580 CCCGTTCTACGTGCTGCCGGTCCCGCTACCA
128 CCC-CCCTACGTGCTACCGATCCCGCTACCA
* * *
23931611 CAACCCTCGGTC-CGGCTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACG
1 CAACCCTCGGTCTAGGCT-GAGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
** * * *
23931674 AAACAGGTGTGCGGGCGCTCAGCCGGTCAGAGAGTCAGAATGCGCAAGCCAGGATCGGCCCGATC
64 AAACAGGCATACGGGCGCTCAGCCGATCAGAGAGGCAGAATGCGCAAGCCAGGATCGGCCCGATC
* * *
23931739 CCCCCTGCGTGCTACCGATCCTGCTACCG
129 CCCCCTACGTGCTACCGATCCCGCTACCA
* * * **
23931768 CAACCCTCGGTCTAGTCTGATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACTAACGAA
1 CAACCCTCGGTCTAGGCTGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * *
23931833 ACAAGCATTCAGGCGTTCAGCCGATC
66 ACAGGCATACGGGCGCTCAGCCGATC
23931859 GTAGAGCTGA
Statistics
Matches: 200, Mismatches: 42, Indels: 14
0.78 0.16 0.05
Matches are distributed among these distances:
156 1 0.00
157 90 0.45
158 22 0.11
159 85 0.43
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CAACCCTCGGTCTAGGCTGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACAGGCATACGGGCGCTCAGCCGATCAGAGAGGCAGAATGCGCAAGCCAGGATCGGCCCGATCCC
CCCTACGTGCTACCGATCCCGCTACCA
Found at i:23932192 original size:26 final size:26
Alignment explanation
Indices: 23932141--23932193 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23932131 CCGGTCTGAT
**
23932141 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
23932167 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
23932193 C
1 C
23932194 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23933174 original size:26 final size:26
Alignment explanation
Indices: 23933145--23933197 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23933135 CCGGTCTGAT
23933145 CTTAGACT-AGGATTGAACTCTGTATG
1 CTTAGACTGAGGA-TGAACTCTGTATG
*
23933171 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGAGGATGAACTCTGTATG
23933197 C
1 C
23933198 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCTGTATG
Found at i:23933612 original size:160 final size:159
Alignment explanation
Indices: 23933322--23933612 Score: 366
Period size: 160 Copynumber: 1.8 Consensus size: 159
23933312 CCCACTGCCA
* * ** * *
23933322 GTCCTGCTGGCACAACCCTCAGTCCGGCTGGGGCGTAGACATGGAATGAACTCCGTATGCCTAAG
1 GTCCCGCTGCCACAACCCTCAGTCCAACTGGGGCGTAGACAGGGAATGAACTCCCTATGCCTAAG
* * * * * *
23933387 CCAGCCCACAAAACGAGCGTGCAGGCTCTCAACCGGTCGGAGAGGCATAATACACAAGCCGGGGA
66 CCAACCCACAAAACGAGCGTGCAGGCACTCAACCGGCCAGAGAGGCAGAATACACAAGACGGGGA
23933452 TCAGCCTGGTCCCCCTTTGCGTGCTACAG
131 TCAGCCTGGTCCCCCTTTGCGTGCTACAG
* * **
23933481 GTCCCGCTGCCACAACCCTCGGTCCAACTGGGGCTTAGGTAGGGAATGAACTTCCCTATGCCTAA
1 GTCCCGCTGCCACAACCCTCAGTCCAACTGGGGCGTAGACAGGGAATGAAC-TCCCTATGCCTAA
* * * * ***
23933546 GCCAACCCACGAAACGGGCGTGCGGGCACTCAGCCGGCCAGAGAGGCAGAATGTGCAAGACGGGG
65 GCCAACCCACAAAACGAGCGTGCAGGCACTCAACCGGCCAGAGAGGCAGAATACACAAGACGGGG
23933611 AT
130 AT
23933613 TGGTCGATCC
Statistics
Matches: 108, Mismatches: 23, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
159 42 0.39
160 66 0.61
ACGTcount: A:0.24, C:0.31, G:0.30, T:0.16
Consensus pattern (159 bp):
GTCCCGCTGCCACAACCCTCAGTCCAACTGGGGCGTAGACAGGGAATGAACTCCCTATGCCTAAG
CCAACCCACAAAACGAGCGTGCAGGCACTCAACCGGCCAGAGAGGCAGAATACACAAGACGGGGA
TCAGCCTGGTCCCCCTTTGCGTGCTACAG
Found at i:23933701 original size:26 final size:26
Alignment explanation
Indices: 23933672--23933724 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23933662 CCGGTCTGAT
* *
23933672 CTTAGATTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
* *
23933698 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
23933724 C
1 C
23933725 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:23934398 original size:26 final size:26
Alignment explanation
Indices: 23934360--23934412 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23934350 CCGGTCCGAT
*
23934360 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
23934386 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
23934412 C
1 C
23934413 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:23935135 original size:27 final size:27
Alignment explanation
Indices: 23935093--23935144 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
23935083 CGATTGCTGA
23935093 TTTAGACTAGGAATGAACTCCGTATGC
1 TTTAGACTAGGAATGAACTCCGTATGC
*
23935120 TTTAGACTAGGGATGAACTCCGTAT
1 TTTAGACTAGGAATGAACTCCGTAT
23935145 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (27 bp):
TTTAGACTAGGAATGAACTCCGTATGC
Found at i:23935944 original size:158 final size:157
Alignment explanation
Indices: 23935782--23936144 Score: 351
Period size: 158 Copynumber: 2.3 Consensus size: 157
23935772 CCTGCTACTG
* * *
23935782 CAACCCTCAGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACC-CATG
1 CAACCCTC-GATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCACATG
* * * * *
23935845 AAACAAGTGTGCGAGCGCTGAGCCAATC-GAAAAGGCATAATGCGCAAGCCAGGGATCAGCTCGA
65 AAACAAGCGTACGAGCGCTAAGCCAATCAG-AAAGGCAAAATACGCAAGCC-GGGATCAGC-CGA
* ** *
23935909 -TCCCCTCTGTGTGCTGCCGATCTCGTTGCCA
127 GTCCCCCCTACGTGCTGCCGATCTCGCT-CCA
* * ** * * *
23935940 CAACCCTTGGTCTGG-CTGGGGCTTAGACAT-GGAACGAACTCCCTATGCCTAAGCCAACCACAT
1 CAACCCTCGATCTGGTCT-GATCTTAGAC-TGGGAATGAACTCCATATGCATAAGCCAACCACAT
* * * * *
23936003 GAAACGAGCGTACGGGTGCTAAGCCGATCAGAAAGGCAAAATACGCAAGCCGGGATCAGCCTAGT
64 GAAACAAGCGTACGAGCGCTAAGCCAATCAGAAAGGCAAAATACGCAAGCCGGGATCAGCCGAGT
* * **
23936068 CCCCCCTACGTGCTGTCGATCTTGCTCTG
129 CCCCCCTACGTGCTGCCGATCTCGCTCCA
* *
23936097 TAACCCTCGATCTGGTCTGATCTTAGACTGGGAATCAACTCCATATGC
1 CAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGC
23936145 TTAGACTGAG
Statistics
Matches: 163, Mismatches: 34, Indels: 17
0.76 0.16 0.08
Matches are distributed among these distances:
156 1 0.01
157 43 0.26
158 74 0.45
159 44 0.27
160 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (157 bp):
CAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCACATGA
AACAAGCGTACGAGCGCTAAGCCAATCAGAAAGGCAAAATACGCAAGCCGGGATCAGCCGAGTCC
CCCCTACGTGCTGCCGATCTCGCTCCA
Found at i:23937951 original size:26 final size:26
Alignment explanation
Indices: 23937922--23937974 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23937912 CCGATTCGAT
23937922 CTTAAACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
* * *
23937948 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
23937974 C
1 C
23937975 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:23940636 original size:26 final size:26
Alignment explanation
Indices: 23940592--23940644 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23940582 CCAGTTCAAT
* *
23940592 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
**
23940618 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
23940644 C
1 C
23940645 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATAAACTCCGTATG
Found at i:23940977 original size:26 final size:26
Alignment explanation
Indices: 23940948--23940997 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
23940938 CCGATCTGAT
23940948 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
23940974 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
23940998 CGCCTATGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23941095 original size:355 final size:355
Alignment explanation
Indices: 23940394--23941095 Score: 831
Period size: 356 Copynumber: 2.0 Consensus size: 355
23940384 CCCTCTGTGT
* **
23940394 GCTACCGGTCCCACTGCCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTACCGGCCCCACTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTAT
* * * * *
23940459 GCCTAAGCTAACCCATGAAACGGGCGTGCGGGTGCTCAACCGACCGGAGAGGCAGAATGCGCAAG
66 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACAGACCGGAGAGGCAGAATGCGCAAG
* * * * *
23940524 TAGGGGATCGACCCAGTCCCCCTTGCGTGCTGCCCATCCTGCTCCCGCAACCCTCGGTCCAGTTC
131 TAGGGGATCGACCCAGTCCCCCCTGCGTACTGCCCATCCTGCTACCGCAACCCTCGATCCAGATC
* * * *
23940589 AATCTTAGACTGGAAATGAACTTCGTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAA
196 AATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTACGCCTAAGCCAA
* * * ** * *
23940654 CCCATGAAATGAGTGTGCGGGCACTCAGCTGGTCGGAGAGGCATAATGCACAAGTCAGGGATCAA
261 CCCACGAAATGAGCGTACGGGCACTCAGCTGACCGGAGAGGCAGAATGCACAAGCCAGGGATCAA
*
23940719 CCCGGTCCCCCTCTGCGTGCTGCCGATCCC
326 CCCGGTCCCCCTCTACGTGCTGCCGATCCC
* * *
23940749 GCTACCGGCCCCACTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTTCGTAT
1 GCTACCGGCCCCACTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTAT
* ** * *
23940814 GCCTAAGCCAACCCACGGAACGAGCGTGCGGGCGCAT-AGTAGGCCGGAGAGGCAGAATGCGCGA
66 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC-TCAACAGACCGGAGAGGCAGAATGCGCAA
* * ** * * * *
23940878 GTTA-GGGATTGGCTTGATTCCCCCCTGTGTACTGCCGATCTTGCTACCGCAACCCTCGATCC-G
130 G-TAGGGGATCGAC-CCAGTCCCCCCTGCGTACTGCCCATCCTGCTACCGCAACCCTCGATCCAG
* * * *
23940941 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTACGCCTAT
193 ATC-AATCTTAGACTGGAAATGAACTCCGTATGCTTAGAC-TGGGAATAAACTCCGTACGCCTAA
** ** *
23941005 GCCAACCCACGAAATGAGCGTACGGGTGCTCAG-TCGACCGGAGAGGCAGAATGCGTAAGCCGGG
256 GCCAACCCACGAAATGAGCGTACGGGCACTCAGCT-GACCGGAGAGGCAGAATGCACAAGCCAGG
** *
23941069 GATCGGCTCGGTCCCCC-CTACGTGCTG
320 GATCAACCCGGTCCCCCTCTACGTGCTG
23941096 TCGTAACCCT
Statistics
Matches: 288, Mismatches: 53, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
355 132 0.46
356 155 0.54
357 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (355 bp):
GCTACCGGCCCCACTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTAT
GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACAGACCGGAGAGGCAGAATGCGCAAG
TAGGGGATCGACCCAGTCCCCCCTGCGTACTGCCCATCCTGCTACCGCAACCCTCGATCCAGATC
AATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTACGCCTAAGCCAA
CCCACGAAATGAGCGTACGGGCACTCAGCTGACCGGAGAGGCAGAATGCACAAGCCAGGGATCAA
CCCGGTCCCCCTCTACGTGCTGCCGATCCC
Found at i:23942197 original size:26 final size:26
Alignment explanation
Indices: 23942159--23942211 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23942149 GGCTCAAAAT
23942159 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23942185 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23942211 C
1 C
23942212 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23942839 original size:316 final size:316
Alignment explanation
Indices: 23942184--23943627 Score: 1603
Period size: 316 Copynumber: 4.6 Consensus size: 316
23942174 AACTCCGTAT
* * * *
23942184 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * * * *
23942249 CCGACCGGAGGGGTAGAATGCGCAAGCCAGGGATC-AGCCCGATCCCCCCTTCGTGCTGTCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGATCCCCCCTGCGTGCTGTCGATC
* * * *
23942313 CTGCTGCCACAACCCTCGGTTTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCA
130 CTGCTGTCGCAACCCTCGG-TTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCA
** *
23942378 ACCCACGAAATGAGTTTGCGGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCTGGGGATCG
194 ACCCACGAAATGAGCGTACGGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCTGGGGATCG
* ** * * * * * *
23942443 GCCCGGTCTGCCTCTGCATACTATCGGTCTCGCTGCCACAACCATCGATCCGGCTAGG
259 GCCTGGTCCCCCTCTGCATGCTGTCGGTCCCGCTGCCACAACCCTCGATCCAGCTGGG
*
23942501 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTAAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * * * * * * * *
23942566 CTGGTCAGAGAGGCAGAATACGTAAGCCGAGGATCGACCCGGTCCCTCCTGTGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* * * * * *
23942631 TACTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAATTCGTATGCCTAAG-CAA
131 TGCTGTCGCAACCCTCGGT-TGGTCTGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAA
* * ** * * *
23942695 CCCACGAAACGAGCGTACAGGCGTTGAACCGACCGAATAGGCATAATTCACAAGCTGGGGATCGG
195 CCCACGAAATGAGCGTACGGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCTGGGGATCGG
* * * *
23942760 CCTGGTCCCCCTCTGCGTGCTGTCGATCCCGCTACCACAACCCTCAATCCAGCTGGG
260 CCTGGTCCCCCTCTGCATGCTGTCGGTCCCGCTGCCACAACCCTCGATCCAGCTGGG
* *
23942817 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* *
23942882 CCAGCCGGAGAGGCAGAATGTGCAAGCCGGGGATC-AGCCCGATCCCCCCTGCGTGCTGTCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGATCCCCCCTGCGTGCTGTCGATC
* ** * * * * *
23942946 CTGCTGCCTTAAGCCTCAGTTCGATCTGATCTTAGACTAGAAATGAACTCCATATGCATAAGTCA
130 CTGCTGTCGCAACCCTCGGTT-GGTCTGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCA
* * * * * ** * *
23943011 ACCCACGAAATAAGCGTACGGGCACTGAGCTGGCAGAAAAGGCATAATGCGTAAG-TCGAGGATT
194 ACCCACGAAATGAGCGTACGGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCT-GGGGATC
* * *
23943075 GGCCTGGTCCCCCTCTGCATGTTGTCGGTCCTGCTGCCAGAACCCTCGATCC-GACTGGG
258 GGCCTGGTCCCCCTCTGCATGCTGTCGGTCCCGCTGCCACAACCCTCGATCCAG-CTGGG
* *
23943134 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* *** * * * * *
23943199 CTGGTTAGAGAGGCAGAATGCGCAAGTCGGGGATCGACTCGGT-CCCCTTACGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* * * * *
23943263 TACTGTCGTAACCCTCGATCCGGTCTGATCTTAGACTGAGAATGAACTCCATATGCATAAGTCAA
131 TGCTGTCGCAACCCTCGGT-TGGTCTGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAA
* * ** * * **
23943328 CCCATGAAATGAGCGTGCGGGTGCTGAGCAGGCCGAAGAGGCATAATGCGA-AAGCCAGGGATCG
195 CCCACGAAATGAGCGTACGGGCACTGAGCCGACCGAAGAGGCATAATGC-ACAAGCTGGGGATCG
* * * * *
23943392 G-CTCAGTCCCCCCTATG--TGCTGCCGGTCTCGCTGCCACAACCCTCGATCCAGATGGG
259 GCCT-GGT-CCCCCTCTGCATGCTGTCGGTCCCGCTGCCACAACCCTCGATCCAGCTGGG
* * * *
23943449 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
** * * * * * * *
23943514 CCAACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGATCCCTCCTGCGTGCTGCCAATCT
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
** * * *
23943579 TGCTGTCGCAACCCTAAGTTCAGTCCGATCTTAGATTGGGAATGAACTC
131 TGCTGTCGCAACCCTCGGTT-GGTCTGATCTTAGACTGGGAATGAACTC
23943628 TGTATGCTTA
Statistics
Matches: 930, Mismatches: 181, Indels: 33
0.81 0.16 0.03
Matches are distributed among these distances:
315 126 0.14
316 442 0.48
317 360 0.39
318 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
TGCTGTCGCAACCCTCGGTTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAAC
CCACGAAATGAGCGTACGGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCTGGGGATCGGC
CTGGTCCCCCTCTGCATGCTGTCGGTCCCGCTGCCACAACCCTCGATCCAGCTGGG
Found at i:23943391 original size:633 final size:632
Alignment explanation
Indices: 23942184--23943627 Score: 1849
Period size: 633 Copynumber: 2.3 Consensus size: 632
23942174 AACTCCGTAT
* * * * *
23942184 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
* * * *
23942249 CC-GACCGGAGGGGTAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTTCGTGCTGTCGATC
66 CCAG-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATC
* * * * *
23942313 CTGCTGCCACAACCCTCGGTTTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCA
130 CTGCTGCCACAACCCTCAGTTCGATCTGATCTTAGACTAGAAATGAACTCCATATGCATAAGTCA
* ** * * * *
23942378 ACCCACGAAATGAGTTTGCGGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCTGGGGATCG
195 ACCCACGAAATAAGCGTACGGGCACTGAGCCGACAGAAAAGGCATAATGCACAAGCTGAGGATCG
** *
23942443 GCCCGGTCTGCCTCTGCATACTATCGGTCTCGCTGCCACAACCATCGATCCGGCTAGGGCTTAGA
260 GCCCGGTCCCCCTCTGCATACTATCGGTCTCGCTGCCACAACCATCGATCCGACTAGGGCTTAGA
*
23942508 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTAAGCTGGTCA
325 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTAAGCTGGTCA
* **
23942573 GAGAGGCAGAATACGTAAGCCGAGGATCGACCCGGTCCCTCCTGTGTGCTGTCGATCCTACTGTC
390 GAGAGGCAGAATACGCAAGCCGAGGATCGACCCGGTCCCTCCTACGTGCTGTCGATCCTACTGTC
* * * * * *
23942638 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAATTCGTATGCCTAAGCAACCCACGAA
455 GCAACCCTCGATCCGGTCCGATCTTAGACTGAGAATGAAATCCATATGCATAAGCAACCCACGAA
* * * * ** *
23942703 ACGAGCGTACAGGCGTTGAACCGACCGAATAGGCATAATTCACAAGCTGGGGATCGGC-CTGGTC
520 ACGAGCGTACAGGCGCTGAACAGACCGAAGAGGCATAATGCACAAGCCAGGGATCGGCTC-AGTC
* * *
23942767 CCCCTCTGCGTGCTGTCGATCCCGCTACCACAACCCTCAATCCAGCTGGG
584 CCCC-CTACGTGCTGCCGATCCCGCTACCACAACCCTCAATCCAGATGGG
*
23942817 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
*
23942882 CCAGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCC
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCC
** *
23942947 TGCTGCCTTAAGCCTCAGTTCGATCTGATCTTAGACTAGAAATGAACTCCATATGCATAAGTCAA
131 TGCTGCCACAACCCTCAGTTCGATCTGATCTTAGACTAGAAATGAACTCCATATGCATAAGTCAA
* * ** *
23943012 CCCACGAAATAAGCGTACGGGCACTGAGCTGGCAGAAAAGGCATAATGCGTAAG-TCGAGGATTG
196 CCCACGAAATAAGCGTACGGGCACTGAGCCGACAGAAAAGGCATAATGCACAAGCT-GAGGATCG
* ** * * * *
23943076 GCCTGGTCCCCCTCTGCATGTTGTCGGTC-CTGCTGCCAGAACCCTCGATCCGACTGGGGCTTAG
260 GCCCGGTCCCCCTCTGCATACTATCGGTCTC-GCTGCCACAACCATCGATCCGACTAGGGCTTAG
* * *
23943140 ACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGGCATGCGGGCGCTCAGCTGGTT
324 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTAAGCTGGTC
* * * * *
23943205 AGAGAGGCAGAATGCGCAAGTCGGGGATCGACTCGGTCCC-CTTACGTGCTGTCGATCCTACTGT
389 AGAGAGGCAGAATACGCAAGCCGAGGATCGACCCGGTCCCTCCTACGTGCTGTCGATCCTACTGT
* * * *
23943269 CGTAACCCTCGATCCGGTCTGATCTTAGACTGAGAATGAACTCCATATGCATAAGTCAACCCATG
454 CGCAACCCTCGATCCGGTCCGATCTTAGACTGAGAATGAAATCCATATGCATAAG-CAACCCACG
* * * * * *
23943334 AAATGAGCGTGCGGGTGCTGAGCAGGCCGAAGAGGCATAATGCGA-AAGCCAGGGATCGGCTCAG
518 AAACGAGCGTACAGGCGCTGAACAGACCGAAGAGGCATAATGC-ACAAGCCAGGGATCGGCTCAG
* * * * *
23943398 TCCCCCCTATGTGCTGCCGGTCTCGCTGCCACAACCCTCGATCCAGATGGG
582 TCCCCCCTACGTGCTGCCGATCCCGCTACCACAACCCTCAATCCAGATGGG
* * *
23943449 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
* * * * * * * *
23943514 CCAACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGATCCCTCCTGCGTGCTGCCAATCT
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCC
* * * * * * *
23943579 TGCTGTCGCAACCCTAAGTTC-AGTCCGATCTTAGATTGGGAATGAACTC
131 TGCTGCCACAACCCTCAGTTCGA-TCTGATCTTAGACTAGAAATGAACTC
23943628 TGTATGCTTA
Statistics
Matches: 698, Mismatches: 106, Indels: 15
0.85 0.13 0.02
Matches are distributed among these distances:
631 1 0.00
632 261 0.37
633 433 0.62
634 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (632 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCAGTTCGATCTGATCTTAGACTAGAAATGAACTCCATATGCATAAGTCAA
CCCACGAAATAAGCGTACGGGCACTGAGCCGACAGAAAAGGCATAATGCACAAGCTGAGGATCGG
CCCGGTCCCCCTCTGCATACTATCGGTCTCGCTGCCACAACCATCGATCCGACTAGGGCTTAGAC
ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTAAGCTGGTCAG
AGAGGCAGAATACGCAAGCCGAGGATCGACCCGGTCCCTCCTACGTGCTGTCGATCCTACTGTCG
CAACCCTCGATCCGGTCCGATCTTAGACTGAGAATGAAATCCATATGCATAAGCAACCCACGAAA
CGAGCGTACAGGCGCTGAACAGACCGAAGAGGCATAATGCACAAGCCAGGGATCGGCTCAGTCCC
CCCTACGTGCTGCCGATCCCGCTACCACAACCCTCAATCCAGATGGG
Found at i:23943593 original size:158 final size:158
Alignment explanation
Indices: 23942184--23943571 Score: 1060
Period size: 158 Copynumber: 8.8 Consensus size: 158
23942174 AACTCCGTAT
* * *
23942184 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
23942249 CCGACCGGAGGGGTAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTTCGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
* ** * *
23942314 TGCTGCCACAACCCTCGGTTTGGTCTGA
131 TGCTGCCACAACCCTCGATCCGATCGGA
* * * * * ** * *
23942342 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGTTTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * * * * *
23942406 GCCGACCGAAGAGGCATAATGCACAAGCTGGGGATCGGCCCGGTCTGCCTCTGCATACTATCGGT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTC-CCCCCTGCGTGCTGTCGAT
* * *
23942471 -CTCGCTGCCACAACCATCGATCCGGCTAGG-
129 CCT-GCTGCCACAACCCTCGATCC-GATCGGA
* *
23942501 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTAAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * *
23942566 CTGGTCAGAGAGGCAGAATACGTAAGCCGAGGATCGACCCGGTCCCTCCTGTGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
* * * * * * *
23942631 TACTGTCGCAACCCTCGGTCTGGTCCGA
131 TGCTGCCACAACCCTCGATCCGATCGGA
* * * * * * * *
23942659 TCTTAGAC-TGGGAATGAAATTCGTATGCCTAAG-CAACCCACGAAACGAGCGTACAGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
23942722 ACCGACCGAATAGGCATAATTCACAAGCTGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTCGAT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCC-CTGCGTGCTGTCGAT
* * * * *
23942787 CCCGCTACCACAACCCTCAATCC-AGCTGGG
129 CCTGCTGCCACAACCCTCGATCCGATC-GGA
* * *
23942817 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
23942882 CCAGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
** * * *
23942947 TGCTGCCTTAAGCCTC-AGTTCGATCTGA
131 TGCTGCCACAACCCTCGA-TCCGATCGGA
* * * * * ** * * *
23942975 TCTTAGAC-TAGAAATGAACTCCATATGCATAAGTCAACCCACGAAATAAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * * * * *
23943039 GCTGGCAGAAAAGGCATAATGCGTAAGTCGAGGATTGGCCTGGTCCCCCTCTGCATGTTGTCGGT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCC-CTGCGTGCTGTCGAT
* *
23943104 CCTGCTGCCAGAACCCTCGATCCGA-CTGGG
129 CCTGCTGCCACAACCCTCGATCCGATC-GGA
* * *
23943134 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *** * * * *
23943199 CTGGTTAGAGAGGCAGAATGCGCAAGTCGGGGATC-GACTCGGT-CCCCTTACGTGCTGTCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCT-GGTCCCCCCTGCGTGCTGTCGATC
* * ** * *
23943262 CTACTGTCGTAACCCTCGATCCGGTCTGA
130 CTGCTGCCACAACCCTCGATCCGATCGGA
* * * * * * * *
23943291 TCTTAGAC-TGAGAATGAACTCCATATGCATAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGA
1 GCTTAGACATG-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * ** * *
23943355 GCAGGCCGAAGAGGCATAATGCGAAAGCCAGGGATCGG-CTCAGTCCCCCCTATGTGCTGCCGGT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCT-GGTCCCCCCTGCGTGCTGTCGAT
*
23943419 -CTCGCTGCCACAACCCTCGATCCAGAT-GGG
129 CCT-GCTGCCACAACCCTCGATCC-GATCGGA
* * * * *
23943449 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * *
23943514 CCAACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGATCCCTCCTGCGTGCTG
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTG
23943572 CCAATCTTGC
Statistics
Matches: 941, Mismatches: 261, Indels: 56
0.75 0.21 0.04
Matches are distributed among these distances:
156 2 0.00
157 183 0.19
158 454 0.48
159 296 0.31
160 6 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGATCCGATCGGA
Found at i:23943644 original size:26 final size:26
Alignment explanation
Indices: 23943608--23943660 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23943598 TCAGTCCGAT
*
23943608 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
23943634 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
23943660 C
1 C
23943661 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:23944266 original size:362 final size:364
Alignment explanation
Indices: 23943585--23944266 Score: 806
Period size: 362 Copynumber: 1.9 Consensus size: 364
23943575 ATCTTGCTGT
* * *
23943585 CGCAACCCTAAGTTCAGTCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGATTGGGGATGA
1 CGCAACCCTAAGTTCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAATGGGAATGA
* * * * *
23943650 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACCCAGCCGGTCGGAGAGGCATA
66 A--CCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACCCAGCCGATAGGAGAGGCAGA
** * * * * *
23943715 ATGTGCAAGCCGGGGATCTACCTGGTCCCCCTTTACGTGCTGTCAATCCCACTGCCACAACCCTC
129 ATGCACAAGACGGGGATCGACCTGATCCCCCTCTACGTGCTATCAATCCCACTGCCACAACCCTC
* * * * * * *
23943780 AGTCCTGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGT
194 AGTCCAGCTGGAGCTCAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGA
* * * * * * *
23943845 ACGGGTGCTCTACCGGCCGAAGAGGTAGAATCGCAAGCCGGGGATTAGCCCGGTCCCCCTTACAT
259 ACGGGAGCTCAACCGACCGAAGAGGCAGAATCGCAAACCGGGGATGAGCCCGATCCCCCTTACAT
23943910 GCTATAGATCCTATTGCTGGTCCTGCTGTCGGTCCTGCTAC
324 GCTATAGATCCTATTGCTGGTCCTGCTGTCGGTCCTGCTAC
* *
23943951 CGCAACCCTCAGTTCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATG
1 CGCAACCCTAAGTTCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA-ATGGGAATG
*
23944015 AA-C-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGATAGGAGAGGCAGAA
65 AACCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACCCAGCCGATAGGAGAGGCAGAA
* * ** *
23944078 TGCACAAGATGGGGATCGGCCTGATCCCCC-CTACGTGCTATCAATCCTGCTGCCGCAACCCTC-
130 TGCACAAGACGGGGATCGACCTGATCCCCCTCTACGTGCTATCAATCCCACTGCCACAACCCTCA
* * * *
23944141 GATCCAGTCT-GATCTCATAC-TAGGAATGAA-TGCCGTATGCCTAAGTCAACTCACGAAACAAG
195 G-TCCAG-CTGGAGCTCAGACAT-GGAATGAACT-CCGTATGCCTAAGCCAACCCACGAAACAAG
* * * **
23944203 CGAACGGGAGCTGAACCGACCGGAA-AGGCATAATGCGCAAACCGGGGATGGGTTCGATCCCCCT
256 CGAACGGGAGCTCAACCGACC-GAAGAGGCAGAAT-CGCAAACCGGGGATGAGCCCGATCCCCCT
23944267 CTGCGTGCTG
Statistics
Matches: 263, Mismatches: 46, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
360 3 0.01
361 94 0.36
362 105 0.40
363 1 0.00
366 59 0.22
367 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (364 bp):
CGCAACCCTAAGTTCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAATGGGAATGA
ACCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACCCAGCCGATAGGAGAGGCAGAAT
GCACAAGACGGGGATCGACCTGATCCCCCTCTACGTGCTATCAATCCCACTGCCACAACCCTCAG
TCCAGCTGGAGCTCAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGAAC
GGGAGCTCAACCGACCGAAGAGGCAGAATCGCAAACCGGGGATGAGCCCGATCCCCCTTACATGC
TATAGATCCTATTGCTGGTCCTGCTGTCGGTCCTGCTAC
Found at i:23944525 original size:27 final size:26
Alignment explanation
Indices: 23944471--23944521 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
23944461 CCATTCTGAT
23944471 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23944497 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
23944522 TGCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23945105 original size:159 final size:160
Alignment explanation
Indices: 23944708--23945112 Score: 381
Period size: 159 Copynumber: 2.5 Consensus size: 160
23944698 ACTCCATATG
* * **
23944708 CTTAGACATGAAATGAAC-CCCATATGCCTAAGCCAACCCACGAAA-GGAGTGTGCGGGCGCTCA
1 CTTAGAAATGGAATGAACTCCC-TATGCCTAAGCCAACCCACGAAACGG-GCATGCGGGCGCTCA
* * * * *
23944771 GTCGGTCGGAGAGGTAGAAAGCGTAAGCCAGGGATCGACCCGGTCCCCCCCCCGCGTGCTATCGA
64 GTCGGTCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCCCCCCCCCGCGTGCTATCGA
** * * * *
23944836 TCTTGCTGCCGCAACCCTTGGTCCGATCTGAT
129 TCCCGCTGCCACAACCCTCGATCCGAGCTGAT
* * ** * * * * *
23944868 CTTAG-ACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACAAAACGAGCATGCGAGCACTAAG
1 CTTAGAAAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAG
* * * * * * * * * * *
23944932 TCGGCCAGAAAGGCATAATGCGCAAGCCAAGGATTGGCCTGAT-CCCCCTCTGCGTGCTGTCGGT
65 TCGGTCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCCCCCCCCCGCGTGCTATCGAT
23944996 CCCGCTGCCACAACCCTCGATCC-AGCTGGGA-
130 CCCGCTGCCACAACCCTCGATCCGAGCT--GAT
* *
23945027 CTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAGC
1 CTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAGT
*
23945092 CGATCGGAGAGGCAGAATGCG
66 CGGTCGGAGAGGCAGAATGCG
23945113 TAAGTCGAGA
Statistics
Matches: 188, Mismatches: 51, Indels: 13
0.75 0.20 0.05
Matches are distributed among these distances:
158 3 0.02
159 103 0.55
160 79 0.42
161 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (160 bp):
CTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAGT
CGGTCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCCCCCCCCCGCGTGCTATCGATC
CCGCTGCCACAACCCTCGATCCGAGCTGAT
Found at i:23945236 original size:26 final size:26
Alignment explanation
Indices: 23945185--23945237 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23945175 CCGGTTCGAT
* *
23945185 CTTAGACTGGGAACGAACTTCATATG
1 CTTAGACTGAGAACGAACTCCATATG
* *
23945211 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAACGAACTCCATATG
23945237 C
1 C
23945238 ATAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAACGAACTCCATATG
Found at i:23945513 original size:343 final size:343
Alignment explanation
Indices: 23944868--23945614 Score: 980
Period size: 343 Copynumber: 2.2 Consensus size: 343
23944858 CCGATCTGAT
* * * * * *
23944868 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACAAAACGAGCATGCGAGCACTAAGT
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGCACTAAGC
* * * * * * **
23944933 CGGCCAGAAAGGCATAATGCGCAAGCCAAGGATTGGCCTGATCCCCCTCTGCGTGCTGTCGGTCC
66 CAGCCAGAAAGGCATAATACACAAGCCAAGGATCGGCCCGATCCCCCCCTGCGTGCTACCGGTCC
* *
23944998 CGCTGCCACAACCCTCGATCCAGCTGGGACTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAA
131 CACTGCCACAACCCTCGATCCAGATGGGACTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAA
** * * * *
23945063 CCCATGAAACGGGCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGTCGAGATTCAG
196 CCCATGAAACGAACATGCGGGCACCCAGCCGATCGGAGAGGCAAAATGCGCAAGTCGAGATTCAG
* * *
23945128 CCCGGTCGCCCCTGCGTGCTACAGATCATGCTGCCACAACCCTCGGTCCGGTTCGATCTTAGACT
261 CCCGGTCCCCCCTGCGTGCTACAGATCATGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACT
*
23945193 GGGAACGAACTTCATATG
326 GGGAACGAACTCCATATG
* ** *
23945211 CTTAGACTGAGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGCACTAAGC
* *
23945276 CAGCC-GAAGAGGCATAATACACAAGCCAGGGATCGGCCCGGTCCCCCCCTGCGTGCTACCGGTC
66 CAGCCAGAA-AGGCATAATACACAAGCCAAGGATCGGCCCGATCCCCCCCTGCGTGCTACCGGTC
* * * * * *
23945340 CCACTGCCACAACCCTCGTTTCGGATGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCA
130 CCACTGCCACAACCCTCGATCCAGATGGGACTTAGAAATGGAATGAACTCCCTATGCCTAAGCCA
* *
23945405 ACCCATGAAACGAACGTGCGGGCACCCAGCCGATCGGAGAGGCAAAATGCGCAAGTCGTGGA-TC
195 ACCCATGAAACGAACATGCGGGCACCCAGCCGATCGGAGAGGCAAAATGCGCAAGTCG-AGATTC
* * * *
23945469 GGCCCGGTCCCCCCTGCGTGCTACCA-ATCTTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAG
259 AGCCCGGTCCCCCCTGCGTGCTA-CAGATCATGCTGCCACAACCCTCGGTCCGATCCGATCTTAG
* *
23945533 ACTGGGAATGAACTCCGTATG
323 ACTGGGAACGAACTCCATATG
* * **
23945554 CTTAGACTGGGGATGAACTCTGTATG-ACTAAGTCAACCCATGAAATGAGCGTGCGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCA-TAAGTCAACCCACAAAATGAGCGTGCGGGCACT
23945615 CAACAGACCG
Statistics
Matches: 347, Mismatches: 53, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
342 4 0.01
343 339 0.98
344 4 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (343 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGCACTAAGC
CAGCCAGAAAGGCATAATACACAAGCCAAGGATCGGCCCGATCCCCCCCTGCGTGCTACCGGTCC
CACTGCCACAACCCTCGATCCAGATGGGACTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAA
CCCATGAAACGAACATGCGGGCACCCAGCCGATCGGAGAGGCAAAATGCGCAAGTCGAGATTCAG
CCCGGTCCCCCCTGCGTGCTACAGATCATGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACT
GGGAACGAACTCCATATG
Found at i:23945557 original size:26 final size:26
Alignment explanation
Indices: 23945528--23945579 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23945518 CCGATCCGAT
23945528 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
23945554 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23945580 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23953392 original size:159 final size:158
Alignment explanation
Indices: 23952984--23953399 Score: 398
Period size: 159 Copynumber: 2.6 Consensus size: 158
23952974 AACTCCTTAT
* ** *
23952984 GCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTTTATGCCTAAGCCAACCCAAGAAACGAGAGTGCGGGCGCTCAG
** ** *
23953049 CCGGTC-AGAGAGGTAGAATGCGCAAGCTAAGGATCGGTCCCGTCCCCCTTGTGAGCTGTCGATC
66 CCGACCGA-AGAGGTAGAATGCGCAAGCTGGGGATCGGTCCCGTCCCCCTTGTCAGCTGTCGATC
** * *
23953113 CTACTACCGTAACCCTCAGTTCAGTCTGA
130 CTACTACCACAACCCTCAGGTCAGGCTGA
* * * * *
23953142 TCTTAGAC-TGGGAATGAACT-TTGTATGCATAAGTCAACCCACA-AAACGAGCGTGCGGGTGCT
1 GCTTAGACAT-GGAATGAACTCTT-TATGCCTAAGCCAACCCA-AGAAACGAGAGTGCGGGCGCT
* * *** * * *
23953204 GAGTCGACCGAAGAAACATAATGTGCAAGCCGGGGATCGG-CCCAGTCCCCCTCTG-CATGCTGT
63 CAGCCGACCGAAGAGGTAGAATGCGCAAGCTGGGGATCGGTCCC-GTCCCCCT-TGTCA-GCTGT
* * *
23953267 C-AGTCCTGCTGCCACAACCCTC-GGTCTGGCTGA
125 CGA-TCCTACTACCACAACCCTCAGGTCAGGCTGA
* *
23953300 GGCTTAGACATGGAATGAACTCTTTATGCCTAAGCCAACCCATGAAACGAGAGTGTGGGCGCTCA
1 -GCTTAGACATGGAATGAACTCTTTATGCCTAAGCCAACCCAAGAAACGAGAGTGCGGGCGCTCA
* *
23953365 ACCGACCGAAGAGGTAGAATGCACAAGCTGGGGAT
65 GCCGACCGAAGAGGTAGAATGCGCAAGCTGGGGAT
23953400 TGGCTCGATC
Statistics
Matches: 201, Mismatches: 45, Indels: 23
0.75 0.17 0.09
Matches are distributed among these distances:
157 3 0.01
158 94 0.47
159 101 0.50
160 3 0.01
ACGTcount: A:0.26, C:0.27, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTTTATGCCTAAGCCAACCCAAGAAACGAGAGTGCGGGCGCTCAG
CCGACCGAAGAGGTAGAATGCGCAAGCTGGGGATCGGTCCCGTCCCCCTTGTCAGCTGTCGATCC
TACTACCACAACCCTCAGGTCAGGCTGA
Found at i:23953507 original size:26 final size:26
Alignment explanation
Indices: 23953457--23953509 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23953447 CCGATCCGAT
**
23953457 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23953483 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23953509 C
1 C
23953510 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23954020 original size:26 final size:26
Alignment explanation
Indices: 23953984--23954036 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23953974 CTGATCTGAT
23953984 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
23954010 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
23954036 C
1 C
23954037 CTGGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23954745 original size:26 final size:26
Alignment explanation
Indices: 23954707--23954759 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23954697 GGCTCAAAAT
* *
23954707 CTTAGACTGGGAATGGACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23954733 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23954759 C
1 C
23954760 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23955234 original size:26 final size:26
Alignment explanation
Indices: 23955205--23955257 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23955195 CCGGTCTGAT
*
23955205 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
23955231 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23955257 C
1 C
23955258 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23956061 original size:158 final size:158
Alignment explanation
Indices: 23955610--23956061 Score: 421
Period size: 158 Copynumber: 2.9 Consensus size: 158
23955600 AACTCTGTAT
* * *
23955610 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCGAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCGAACCCATGAAACGAGCATGCGGGTGCTCAG
* * * * * * * * *
23955675 CCGGTCGGAGAGGTAGAATGCGTAAGCTGGGGATCGACCCGGTCCCCCTTGCGTGCTATCGATCC
66 CCGGCCGGAAAGGCAGAATGAGTAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* ** * * *
23955740 TACCGCCATAACCCTCGCTCCGGTCTGA
131 TGCTACCACAACCCTCGCTCCAGACTGA
* * * * * * * * *
23955768 TCTTAGAC-TAAAAATGAACTCTGCATGCCTAAGTC-AACCCACGAAACAAGCATGTGAGTGCTG
1 GCTTAGACAT-AGAATGAACTCCGTATGCCTAAG-CGAACCCATGAAACGAGCATGCGGGTGCTC
* * * * *
23955831 AGCCGACC-GAAGAGGCATAATGCA-CAAGTCGGGGATCGGCCCGATCCCCTCC-GCGTGCTGCC
64 AGCCGGCCGGAA-AGGCAGAATG-AGTAAGCCGGGGATCGGCCCGATCCCC-CCTGCGTGCTGTC
* * * * *
23955893 GGTCCCGCTACCACAACCCTTGGT-CAGACTGGG
126 GATCCTGCTACCACAACCCTCGCTCCAGACT-GA
* *
23955926 GCTTAGACATTGAATGAACTCCGTATGCCTAAGCGAACCAATGAAACGAGCATGCGGGTGCTCAG
1 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCGAACCCATGAAACGAGCATGCGGGTGCTCAG
* * * *
23955991 CCGGCCGGAAAGGCCGAATGAGTAAGCCGAGGATCGGTCCGATCCCCCCTACGTGCTGTCGATCC
66 CCGGCCGGAAAGGCAGAATGAGTAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
23956056 TGCTAC
131 TGCTAC
23956062 TGTACACCCC
Statistics
Matches: 224, Mismatches: 59, Indels: 22
0.73 0.19 0.07
Matches are distributed among these distances:
157 11 0.05
158 207 0.92
159 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATAGAATGAACTCCGTATGCCTAAGCGAACCCATGAAACGAGCATGCGGGTGCTCAG
CCGGCCGGAAAGGCAGAATGAGTAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
TGCTACCACAACCCTCGCTCCAGACTGA
Found at i:23957476 original size:25 final size:26
Alignment explanation
Indices: 23957436--23957487 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
23957426 CTGGTCCGAT
23957436 CTTAGACTAGGAATGAAAT-CGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
* * *
23957461 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
23957487 C
1 C
23957488 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCGTATG
Found at i:23958018 original size:112 final size:112
Alignment explanation
Indices: 23957794--23958005 Score: 241
Period size: 112 Copynumber: 1.9 Consensus size: 112
23957784 CCTTCGGTCT
* * * *
23957794 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCCAAGCCAACCCACAAAACGAGTGTGTGGG
1 GATCCAATCTTAGACTGGGAATGAACTCCGTATGCACAAGCCAACCCACAAAACGAGCGTGCGGG
* * * ** *
23957859 TGTTCAGACAGCCGGAGAGGTGGAATGCACAAGCCGAGGATTGGCCC
66 TGCTCAGACAGCCGAAAAGGCAGAATGCAAAAGCCGAGGATTGGCCC
* *
23957906 GATCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCC-CTGAAAA-GAGCGTGCG
1 GATCCAATCTTAGACTGGGAATGAACTCCGTATGCACAAGCCAACCCAC--AAAACGAGCGTGCG
* * *
23957969 GGTGCTGA-ACCGACCGAAAAGGCATAATGCAAAAGCC
64 GGTGCTCAGACAG-CCGAAAAGGCAGAATGCAAAAGCC
23958006 AGGGATGAGC
Statistics
Matches: 82, Mismatches: 15, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
111 4 0.05
112 74 0.90
113 4 0.05
ACGTcount: A:0.31, C:0.25, G:0.28, T:0.17
Consensus pattern (112 bp):
GATCCAATCTTAGACTGGGAATGAACTCCGTATGCACAAGCCAACCCACAAAACGAGCGTGCGGG
TGCTCAGACAGCCGAAAAGGCAGAATGCAAAAGCCGAGGATTGGCCC
Found at i:23959260 original size:26 final size:26
Alignment explanation
Indices: 23959216--23959268 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
23959206 TCGATCCGAT
* *
23959216 CTTAGATTGGGAATCAACT-TCGTATG
1 CTTAGACTGGGAATAAACTCT-GTATG
*
23959242 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
23959268 C
1 C
23959269 GTAAGTCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:23959627 original size:26 final size:26
Alignment explanation
Indices: 23959589--23959667 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
23959579 CCGGTCCGAT
23959589 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
23959615 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
*
23959641 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
23959667 C
1 C
23959668 CTAAGCCAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 50 0.98
27 1 0.02
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:23959802 original size:210 final size:212
Alignment explanation
Indices: 23959424--23959823 Score: 511
Period size: 218 Copynumber: 1.9 Consensus size: 212
23959414 TTTGACTGGG
* *
23959424 GCTTAGACATGAATGAACTCCGTATGCCAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGTC
1 GCTTAGACATGAATGAACTCCGTATGCCAAGCCAACCCATGAAATGAGCGTACGGGCACTCAGCC
* * * * ** * ***
23959489 GGTCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCGTGCATGCTACCGATCCTGCTGT
66 GGCCAGAAAGGCAAAATGCACAAGCCAGGGATCAGCCCGGTCCCCCAT-CT--CGA-CCTGCTGT
* * * ** * *
23959554 TGGTCCTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTA
127 CGATACTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAAATCCATATGCTTA
23959619 GACATGGAATGAACTCCATAT
192 GACATGGAATGAACTCCATAT
*
23959640 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAG
1 GCTTAGACAT-GAATGAACTCCGTATGCC-AAGCCAACCCATGAAATGAGCGTACGGGCACTCAG
* *
23959705 CCGGCCAGAAAGGCAAAATGCACAAGCCGGGGATCAGCCC-GTCCCCCAT-T-G-CGTGCTGTCG
64 CCGGCCAGAAAGGCAAAATGCACAAGCCAGGGATCAGCCCGGTCCCCCATCTCGACCTGCTGTCG
*
23959766 ATACTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAAATCCATAT
129 ATACTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAAATCCATAT
23959824 ACCTAAGTCA
Statistics
Matches: 159, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
210 59 0.37
212 1 0.01
215 1 0.01
216 10 0.06
217 24 0.15
218 64 0.40
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (212 bp):
GCTTAGACATGAATGAACTCCGTATGCCAAGCCAACCCATGAAATGAGCGTACGGGCACTCAGCC
GGCCAGAAAGGCAAAATGCACAAGCCAGGGATCAGCCCGGTCCCCCATCTCGACCTGCTGTCGAT
ACTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAAATCCATATGCTTAGACA
TGGAATGAACTCCATAT
Found at i:23960055 original size:158 final size:157
Alignment explanation
Indices: 23959640--23960064 Score: 455
Period size: 158 Copynumber: 2.7 Consensus size: 157
23959630 AACTCCATAT
* *
23959640 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * *
23959705 CCGGCCAGAAAGGCAAAATGCACAAGCCGGGGATCAGCCC-GTCCCCCATTGCGTGCTGTCGATA
66 CTGG-C-GAAAGGCAAAATGCACAAGCCGGGGATCGGCCCGGTCCCCCATTGCATCCTGTCGATA
* *
23959769 CTGCTACCGCAACCCTCAGTCCGGTCTGA
129 CCGCTACCACAACCCTCAGTCCGGTCTGA
* * * * * * *
23959798 TCTTAGAC-TGGGAATGAAATCCATATACCTAAGTCAACCCGTGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * *
23959862 CCTGGCGGAGAGGCATAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTTTGCATCCTGTC-AGT
65 GCTGGC-GAAAGGCAAAATGCACAAGCCGGGGATCGGCCCGGTCCCCCATTGCATCCTGTCGA-T
* * *
23959926 CCCGCTGCCACAACCCTCAGTCCGGT-TGGG
128 ACCGCTACCACAACCCTCAGTCCGGTCT-GA
* * * * *
23959956 GCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCATGAAATGGGTGTGCGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * *
23960021 TTGGTCGAACAGGCAGAATGCGCAAGTC-GAGATCGGCCCGGTCC
66 CTGG-CGAA-AGGCAAAATGCACAAGCCGGGGATCGGCCCGGTCC
23960065 GTCCAGTGTG
Statistics
Matches: 218, Mismatches: 42, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
157 34 0.16
158 167 0.77
159 17 0.08
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CTGGCGAAAGGCAAAATGCACAAGCCGGGGATCGGCCCGGTCCCCCATTGCATCCTGTCGATACC
GCTACCACAACCCTCAGTCCGGTCTGA
Found at i:23960154 original size:26 final size:26
Alignment explanation
Indices: 23960114--23960165 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23960104 TGATCTGATA
23960114 TTAGACTGGGAATGAACTCCGCATGC
1 TTAGACTGGGAATGAACTCCGCATGC
* *
23960140 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGCATGC
23960166 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGCATGC
Found at i:23961163 original size:26 final size:26
Alignment explanation
Indices: 23961112--23961164 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23961102 CCGGTCTGAT
**
23961112 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
23961138 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
23961164 C
1 C
23961165 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23961906 original size:501 final size:500
Alignment explanation
Indices: 23961091--23962195 Score: 1284
Period size: 501 Copynumber: 2.2 Consensus size: 500
23961081 CCTACTACCA
*
23961091 CAACCCTCGGTCCGG-TCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGA
1 CAACCCTCGGTCCGGTTC-GATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC-TGGGGATGA
** * * * * *
23961154 ACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCCCAGTCGGTCAGAGAGGTAGA
64 ACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACCCAGCCGCTCAGAGAGGCAGA
* * * * * *
23961219 ATCCGTAAGCCAGGGACCGACCTGGTCCCCCCTGCTTGCTGTCGATCCTGCCGCCGTAACCTTCA
129 ATCCGCAAGCCAGGGACCGACCCGGTCCCCCCTGATTGCTGTCGATCCTACCACCATAACCTTCA
** * * *
23961284 ATTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTT
194 ATTAAGTCTGATCTTACACTAGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACAAGCGTG
** * * *
23961349 CGGGTGCTGAGCCGGTCAGAGAGGCATAATGCGCAAGTCAGGGATCGACCCGGTCCCCTTTTGCA
259 CGGGTGCTGAGCCGACCAGAGAGGCATAATGCGCAAGTCAGGGATAGACCCGGTCCCCCTCTGCA
* * * *
23961414 TGCTGTCGGTCCCATTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTA
324 TGCTGCCAGTCCCACTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTA
* * * * *
23961479 TGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGTTTAGCCGGCCGAAGAG-GC-AGAATGCGC
389 TGCCTAACCCAACCCACAAAACGGGCGTGCGGGCGCTCAGCCGACCG--GAGTGCTAGAATGCAC
* * * * * * *
23961542 AAGTCGGGGATC-GATCTGGTCCCCTCAGTGTGTTACCGAACCTGCTGTCG
452 AAG-CCGGGATCAG-CCCGATCCCCCCAGTGTGCTACCGAACCTGCTATCG
* * * * *
23961592 CAACCCTCGGTCTGGTTCGATTTTAGATTGGGAATGAACTCCGTAAGCTTAGACTGGGGATGAAC
1 CAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAAC
* *
23961657 TCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTCAGCCTGCT-AGAGAGGCAGAA
66 TCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACCCAGCC-GCTCAGAGAGGCAGAA
* * *
23961721 TGCGCAAGCCAGGGACC-AGCCCGGT-CCCCCTTATGTGCTGTCGATCCTACTACCATAACCCTT
130 TCCGCAAGCCAGGGACCGA-CCCGGTCCCCCCTGAT-TGCTGTCGATCCTACCACCATAA-CCTT
** * * * ** *
23961784 -GGTCTAATTC-GATCTTACACT-GAGAATGAACTTCGTATGGATAAGTCAACCCATGAAACGAG
192 CAAT-TAAGTCTGATCTTACACTAG-GAATGAACTCCGTATGCATAAGTCAACCCACAAAACAAG
* *
23961846 CGTGC-GGTCGCTGAGCCGACC-GAAGAGGCATAATGCGCAAGTCGGGGATTAGA-TCGGTCCCC
255 CGTGCGGGT-GCTGAGCCGACCAG-AGAGGCATAATGCGCAAGTCAGGGA-TAGACCCGGTCCCC
** * * * *
23961908 CTCTGTGTGCTGCCAGTCTCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAG
317 CTCTGCATGCTGCCAGTCCCACTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAA
** * *
23961973 CTCCCTATGCCTAACCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGACTGGAGTGCTAGAA
382 CTCCCTATGCCTAACCCAACCCACAAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGTGCTAGAA
* *
23962038 TGCACAAGCCGGGATCAGCCCGATCCCCCCTGTGTGCTACCGATCCTGCTATCG
447 TGCACAAGCCGGGATCAGCCCGATCCCCCCAGTGTGCTACCGAACCTGCTATCG
* * *
23962092 CAACCCTCGGTCCGGTCCGATCTTAGACTAGGATTGAACTCTGTATGCTTAGACTGGGGATGAAC
1 CAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAAC
* *
23962157 TCTGTATGCCTAAGTCAAGCCACGAAACGAGCGTGCGGG
66 TCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
23962196 AGCTCAGTCG
Statistics
Matches: 507, Mismatches: 83, Indels: 29
0.82 0.13 0.05
Matches are distributed among these distances:
499 3 0.01
500 144 0.28
501 346 0.68
502 14 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (500 bp):
CAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAAC
TCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACCCAGCCGCTCAGAGAGGCAGAAT
CCGCAAGCCAGGGACCGACCCGGTCCCCCCTGATTGCTGTCGATCCTACCACCATAACCTTCAAT
TAAGTCTGATCTTACACTAGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACAAGCGTGCG
GGTGCTGAGCCGACCAGAGAGGCATAATGCGCAAGTCAGGGATAGACCCGGTCCCCCTCTGCATG
CTGCCAGTCCCACTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATG
CCTAACCCAACCCACAAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGTGCTAGAATGCACAAGC
CGGGATCAGCCCGATCCCCCCAGTGTGCTACCGAACCTGCTATCG
Found at i:23961941 original size:343 final size:342
Alignment explanation
Indices: 23961296--23961946 Score: 729
Period size: 343 Copynumber: 1.9 Consensus size: 342
23961286 TCGGTCTGAT
* ** *
23961296 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTTCGGGTGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCACTCAGC
* * * * * *
23961361 CGGTCAGAGAGGCATAATGCGCAAGTCAGGGATCGACCCGGTCCCCTTTTGCATGCTGTCGGTCC
66 CGCTCAGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGGTCCCCTTATG-ATGCTGTCGATCC
* * * * * * *
23961426 CATTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
130 CACTACCACAACCCTCGGTCCAACTCGAGCTTACACATGGAATGAACTCCCTATGCATAAGCCAA
* * * * *
23961491 CCCACAAAACGGGCGTGCGGGCGTTTAGCCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGA
195 CCCACAAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCAGAATGCGCAAGTCGGGGATAGA
* ** *
23961556 TCTGGTCCCCTCAGTGTGTTACCGAACCTGCTGTCGCAACCCTCGGTCTGGTTCGATTTTAGATT
260 TCTGGTCCCCTCAGTGTGCTACCGAACCTGCTACCACAACCCTCGGTCTGGTTCGATTTTAGATT
23961621 GGGAATGAACTCCGTAAG
325 GGGAATGAACTCCGTAAG
* * * ** **
23961639 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCACTCAGC
23961704 CTGCT-AGAGAGGCAGAATGCGCAAGCCAGGGACC-AGCCCGGTCCCCCTTATG-TGCTGTCGAT
66 C-GCTCAGAGAGGCAGAATGCGCAAGCCAGGGACCGA-CCCGGT-CCCCTTATGATGCTGTCGAT
* * * * * * * * * *
23961766 CCTACTACCATAACCCTTGGTCTAATTCGATCTTACAC-TGAGAATGAACTTCGTATGGATAAGT
128 CCCACTACCACAACCCTCGGTCCAACTCGAGCTTACACATG-GAATGAACTCCCTATGCATAAGC
** * *
23961830 CAACCCATGAAACGAGCGTGCGGTCGCTGAGCCGACCGAAGAGGCATAATGCGCAAGTCGGGGAT
192 CAACCCACAAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCAGAATGCGCAAGTCGGGGA-
* * **
23961895 TAGATC-GGTCCCCCTCTGTGTGCTGCC-AGTCTCGCTACCACAACCCTCGGTC
256 TAGATCTGGT-CCCCTCAGTGTGCTACCGAACCT-GCTACCACAACCCTCGGTC
23961947 CGGCTGGGGC
Statistics
Matches: 250, Mismatches: 51, Indels: 14
0.79 0.16 0.04
Matches are distributed among these distances:
341 2 0.01
342 116 0.46
343 122 0.49
344 10 0.04
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (342 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCACTCAGC
CGCTCAGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGGTCCCCTTATGATGCTGTCGATCCC
ACTACCACAACCCTCGGTCCAACTCGAGCTTACACATGGAATGAACTCCCTATGCATAAGCCAAC
CCACAAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCAGAATGCGCAAGTCGGGGATAGAT
CTGGTCCCCTCAGTGTGCTACCGAACCTGCTACCACAACCCTCGGTCTGGTTCGATTTTAGATTG
GGAATGAACTCCGTAAG
Found at i:23962155 original size:26 final size:26
Alignment explanation
Indices: 23962113--23962165 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23962103 CCGGTCCGAT
23962113 CTTAGACTAGGATTGAACTCTGTATG
1 CTTAGACTAGGATTGAACTCTGTATG
*
23962139 CTTAGACTGGGGA-TGAACTCTGTATG
1 CTTAGACT-AGGATTGAACTCTGTATG
23962165 C
1 C
23962166 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGATTGAACTCTGTATG
Found at i:23962670 original size:26 final size:26
Alignment explanation
Indices: 23962641--23962693 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23962631 CCGGTCTGAT
* *
23962641 CTTAGATTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
* *
23962667 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
23962693 C
1 C
23962694 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:23963343 original size:26 final size:26
Alignment explanation
Indices: 23963305--23963357 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23963295 CCGGTCCGAT
*
23963305 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
23963331 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
23963357 C
1 C
23963358 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:23964088 original size:26 final size:26
Alignment explanation
Indices: 23964048--23964099 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
23964038 TGGTCTGATT
23964048 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
*
23964074 TTAGACTAGGGATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
23964100 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:23965029 original size:159 final size:158
Alignment explanation
Indices: 23964760--23965047 Score: 357
Period size: 159 Copynumber: 1.8 Consensus size: 158
23964750 TCGGTCTGAT
* * * * * *
23964760 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGTGTGCGAGCGCTGAGC
1 CTTAGACTGGGAACGAACTCCCTATGCATAAGCCAACCCATGAAACAAGCGTACGAGCGCTAAGC
* * * **
23964825 CAATCGAAAAGGCATAATGCGCAAGCCAGGGATCAGCTCGATCCCCCTCTGTGTGCTGCCGATCT
66 CAATCGAAAAGGCAAAATACGCAAGCCAGGGATCAGCTAGATCCCCC-CTACGTGCTGCCGATCT
23964890 CGTTGCCACAACCCTTGGTCTGGCTGGGG
130 CGTTGCCACAACCCTTGGTCTGGCTGGGG
* * * *
23964919 CTTAGACAT-GGAACGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTAAG
1 CTTAGAC-TGGGAACGAACTCCCTATGCATAAGCCAACCCATGAAACAAGCGTACGAGCGCTAAG
* * *
23964983 CCGATC-AGAAAGGCAAAATACGCAAGCCGGGGATCAGCCTAG-TCCCCCCTACGTGCTGTCGAT
65 CCAATCGA-AAAGGCAAAATACGCAAGCCAGGGATCAG-CTAGATCCCCCCTACGTGCTGCCGAT
23965046 CT
128 CT
23965048 TGCTCTGTAA
Statistics
Matches: 108, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
158 15 0.14
159 89 0.82
160 4 0.04
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAACGAACTCCCTATGCATAAGCCAACCCATGAAACAAGCGTACGAGCGCTAAGC
CAATCGAAAAGGCAAAATACGCAAGCCAGGGATCAGCTAGATCCCCCCTACGTGCTGCCGATCTC
GTTGCCACAACCCTTGGTCTGGCTGGGG
Found at i:23965738 original size:158 final size:158
Alignment explanation
Indices: 23965435--23965857 Score: 343
Period size: 158 Copynumber: 2.7 Consensus size: 158
23965425 TCCTGCTGCC
* * *
23965435 GCAACCCTCGGTTCAGTCCGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCCATGG
1 GCAACCCTCAGTTCAGTCCGACCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCCATGA
* * * * ** * *
23965500 ATCGAACGTGCGGGTGTTCAGCCGGCCGGAGAGGTAGAATGCATAAGTCGGGGATCGGCCGGGTA
66 ATCGAACGTGCAGGCGTTCAGCCGGCCGGAGAGGCAGAATGCATAAGCCGGGGATCAACCCGATA
**
23965565 CCCCCTGTGTACTGTCGATCCTGTTTCT
131 CCCCCTACGTACTGTCGATCCTGTTTCT
* * ** * *
23965593 GCAACCCTCAGTTCGGTCTGACCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGA
1 GCAACCCTCAGTTCAGTCCGACCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCCATG-
* * * * * *
23965658 AAT-GAGCGTGTAGGCGTTGAGCCGGCTGGAGAGGCATAAT-CGTAAGCCGGGGATCAACCCGAT
65 AATCGAACGTGCAGGCGTTCAGCCGGCCGGAGAGGCAGAATGCATAAGCCGGGGATCAACCCGAT
* * *** * *
23965721 -CCCTCTCTACGTGCTGTCGGTCCCACTGCC
130 ACCC-C-CTACGTACTGTCGATCCTGTTTCT
* * * * * ** * *
23965751 ACAACCCTC-GGTCTGGCTAGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 GCAACCCTCAGTTCAGTC-CGACCTTAGACTA-AGAATGAACTCCGTATGCCTAAGCCAACCCAT
* ** * * *
23965814 GAAACGGGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGC
64 GAATCGAACGTGCAGGCGTTCAGCCGGCCGGAGAGGCAGAATGC
23965858 GCAAGCTGGG
Statistics
Matches: 206, Mismatches: 52, Indels: 13
0.76 0.19 0.05
Matches are distributed among these distances:
156 3 0.01
157 25 0.12
158 175 0.85
159 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (158 bp):
GCAACCCTCAGTTCAGTCCGACCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCCATGA
ATCGAACGTGCAGGCGTTCAGCCGGCCGGAGAGGCAGAATGCATAAGCCGGGGATCAACCCGATA
CCCCCTACGTACTGTCGATCCTGTTTCT
Found at i:23965894 original size:158 final size:154
Alignment explanation
Indices: 23965615--23966140 Score: 374
Period size: 158 Copynumber: 3.3 Consensus size: 154
23965605 TCGGTCTGAC
** * * * *** ** *
23965615 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGTAGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTCAG
* * * * * * ** * *
23965679 CCGGCTGGAGAGGCATAAT-CGTAAGCCGGGGATCAACCCGATCCCTCTCTACGTGCTGTCGGTC
65 CCGGCCGAAGAGGCAAAATGCGCAAGCTGGGAATCGGCCCGATCAC-CTCTA--TGCTGTCGATC
*
23965743 CCACTGCCACAACCCTCGGTCTGGCTAGGG
127 CCGCTGCCACAACCCTCGGTC-GGCT-GGG
*
23965773 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTCAGC
* * * * *
23965838 CGGCCGGAGAGGCAGAATGCGCAAGCTGGGAATTGGCCCGGTCTGACCTGC-ATGCTGTCGATCT
66 CGGCCGAAGAGGCAAAATGCGCAAGCTGGGAATCGGCCCGATC--ACCT-CTATGCTGTCGATCC
* ** * * **
23965902 TGCTGCCGGAACCCTCGGTCCGATCCGAT
128 CGCTGCCACAACCCTCGGT-CG-GCTGGG
* * * * * * * * *
23965931 CTTAGACATGGATTGAACTCCGTATGCCTAAGCTAACCCATGAAATGAGTGTGCGGGCATTTAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTCAGC
* * * * * * *
23965996 CTGCCGAAGAGGTAAAATGCGCAAGCTGGGGATCGGCCCGATCCCCTCTGTGTCTTGCCAATCCC
66 CGGCCGAAGAGGCAAAATGCGCAAGCTGGGAATCGGCCCGATCACCTCTATG-C-TGTCGATCCC
* * *
23966061 GTTGCCACAACCCTCGATCCGACTGGG
129 GCTGCCACAACCCTCGGT-CGGCTGGG
* * * *
23966088 ACTTAGACATGGAATGAACCCCCTATGCCTTAGCCAATCCACGAAACGGGCGT
1 -CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGT
23966141 GCAGGCATTC
Statistics
Matches: 286, Mismatches: 71, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
155 1 0.00
156 5 0.02
157 3 0.01
158 252 0.88
159 20 0.07
160 3 0.01
161 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (154 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTCAGC
CGGCCGAAGAGGCAAAATGCGCAAGCTGGGAATCGGCCCGATCACCTCTATGCTGTCGATCCCGC
TGCCACAACCCTCGGTCGGCTGGG
Found at i:23966173 original size:158 final size:157
Alignment explanation
Indices: 23965741--23966174 Score: 410
Period size: 158 Copynumber: 2.8 Consensus size: 157
23965731 GTGCTGTCGG
* * *
23965741 TCCCACTGCCACAACCCTCGGTCTGGCTAGGG-CTTAGACATGGAATGAACTCCCTATGCCTAAG
1 TCCCGCTGCCACAACCCTCGGTCCGACT-GGGACTTAGACATGGAATGAACTCCCTATGCCTAAG
* ** * * *
23965805 CCAACCCATGAAACGGGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCTGGGAA
65 CCAACCCATGAAACGGGCGTGCGGGCATTCAACTGGCCGGAGAGGTAGAATGCGCAAGCTGGGAA
* * * *
23965870 TTGGCCCGGTCTGACCTGCATGCTGTCGA
130 TCGGCCCGATC-GACCTGCATGCTGCCAA
** ** ** * *
23965899 TCTTGCTGCCGGAACCCTCGGTCCGA-TCCGATCTTAGACATGGATTGAACTCCGTATGCCTAAG
1 TCCCGCTGCCACAACCCTCGGTCCGACTGGGA-CTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * * * * * * *
23965963 CTAACCCATGAAATGAGTGTGCGGGCATTTAGCCT-GCCGAAGAGGTAAAATGCGCAAGCTGGGG
65 CCAACCCATGAAACGGGCGTGCGGGCATTCA-ACTGGCCGGAGAGGTAGAATGCGCAAGCTGGGA
* *
23966027 ATCGGCCCGATC-CCCT-CTGTGTCTTGCCAA
129 ATCGGCCCGATCGACCTGC-ATG-C-TGCCAA
* * * *
23966057 TCCCGTTGCCACAACCCTCGATCCGACTGGGACTTAGACATGGAATGAACCCCCTATGCCTTAGC
1 TCCCGCTGCCACAACCCTCGGTCCGACTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * *
23966122 CAATCCACGAAACGGGCGTGCAGGCATTCAACTGGCCGGAGACGTAGAATGCG
66 CAACCCATGAAACGGGCGTGCGGGCATTCAACTGGCCGGAGAGGTAGAATGCG
23966175 TAAATCGAGG
Statistics
Matches: 213, Mismatches: 55, Indels: 16
0.75 0.19 0.06
Matches are distributed among these distances:
155 1 0.00
156 6 0.03
157 4 0.02
158 198 0.93
159 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
TCCCGCTGCCACAACCCTCGGTCCGACTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGC
CAACCCATGAAACGGGCGTGCGGGCATTCAACTGGCCGGAGAGGTAGAATGCGCAAGCTGGGAAT
CGGCCCGATCGACCTGCATGCTGCCAA
Found at i:23966677 original size:159 final size:159
Alignment explanation
Indices: 23966286--23966782 Score: 437
Period size: 159 Copynumber: 3.1 Consensus size: 159
23966276 ACGCCGTATC
* * * * * ** *
23966286 CTTAGACATGGAATGAACTCTGTATGGCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACTAGCGTGTGGGCACTCAGC
* * * * * *
23966351 TGGTCGGAGAGGTACAATACGCAAGCTGGGGATCAGCCCGGTCCCCCCCTGCATGCTGTCGATCC
66 CGGTCGGAGAGGTACAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGCATCCTGCCGATCC
** * * *
23966416 TGCTGCCGTAACCCTCGGTCCGGTCCAAT
131 TGCTGCCACAACCCTCAGTCCGCTCCAAG
* * *
23966445 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA-T-GAGTGTACGGGCACTG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACTAGCGTGT--GGGCACTC
* * ** * * * **
23966507 AACCGATCGGAGAGACATAATGCGCATGCCGGGGATCGGCCCAGTCCCCCTTTGCATCCTGCCGA
63 AGCCGGTCGGAGAGGTACAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGCATCCTGCCGA
***
23966572 TCCTGCTGCCACAACCCTCAGTCCAGCT-GGGG
128 TCCTGCTGCCACAACCCTCAGTCC-GCTCCAAG
* * *
23966604 CTTAGACATCGAATGAACTCCCTATGCCTTAGCCAACCCATGAAACTAGCGTGTGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACTAGCGTGTGGGCACTCAGC
* * ** * * * *
23966669 CGGCCGGAGAGGTAGAATGCGCAAATCGGGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATCC
66 CGGTCGGAGAGGTACAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGCATCCTGCCGATCC
* * * * * ** *
23966734 TACTACCCCAACCCTTAGTCCGGTCTGAT
131 TGCTGCCACAACCCTCAGTCCGCTCCAAG
23966763 CTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
23966783 TGCATGCTTA
Statistics
Matches: 264, Mismatches: 65, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 4 0.02
158 4 0.02
159 247 0.94
160 4 0.02
161 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACTAGCGTGTGGGCACTCAGC
CGGTCGGAGAGGTACAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGCATCCTGCCGATCC
TGCTGCCACAACCCTCAGTCCGCTCCAAG
Found at i:23966792 original size:26 final size:26
Alignment explanation
Indices: 23966763--23966815 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23966753 CCGGTCTGAT
23966763 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCTGCATG
* *
23966789 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGCATG
23966815 C
1 C
23966816 CTAAATCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGCATG
Found at i:23967409 original size:11 final size:11
Alignment explanation
Indices: 23967393--23967417 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
23967383 GGCTAGGCTA
23967393 TCCGGCAATGC
1 TCCGGCAATGC
23967404 TCCGGCAATGC
1 TCCGGCAATGC
23967415 TCC
1 TCC
23967418 AACGATGCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.40, G:0.24, T:0.20
Consensus pattern (11 bp):
TCCGGCAATGC
Found at i:23967425 original size:11 final size:11
Alignment explanation
Indices: 23967411--23967435 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
23967401 TGCTCCGGCA
23967411 ATGCTCCAACG
1 ATGCTCCAACG
23967422 ATGCTCCAACG
1 ATGCTCCAACG
23967433 ATG
1 ATG
23967436 GTGCCCCGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.32, G:0.20, T:0.20
Consensus pattern (11 bp):
ATGCTCCAACG
Found at i:23967827 original size:159 final size:159
Alignment explanation
Indices: 23967533--23967835 Score: 362
Period size: 159 Copynumber: 1.9 Consensus size: 159
23967523 CTCTGTATGC
* * * *
23967533 TTAGACATGGAATGAACTCCGTACGCCTAACCCAACGCACGAAACGAGCGTGTGGGCGCTCAGTC
1 TTAGACATGGAATGAACTCCCTACGCCTAACACAACGCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * *
23967598 GGCCAGAGAGGTAGAATGCACAAGCTGAGGATCGACCTAGTCCCCCTCTACGTGCTGTCGATCCC
66 GGCCAGAGAGGAACAATACACAAGCTGAGGATCGACCCAGTCCCCCTCTACGTGCTGTCGATCCC
*
23967663 GCTACCACAACCCTTGGTCTGGCTGGGGA
131 ACTACCACAACCCTTGGTCTGGCTGGGGA
* * * *
23967692 TTAGACATGGAATGAACTCCCTATGCCTAAGACAAC-CTACGAAACGGGTGTGCGGGCGCTCAGC
1 TTAGACATGGAATGAACTCCCTACGCCTAACACAACGC-ACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
23967756 CGGTCAGAAGAGGAACAATACGCAAG-TCGGGGATCGGCCCGGT-CCCCTTTACGTGCTG-CTGA
65 CGGCCAG-AGAGGAACAATACACAAGCT-GAGGATCGACCCAGTCCCCCTCTACGTGCTGTC-GA
*
23967818 TCCTACTACCACAACCCT
127 TCCCACTACCACAACCCT
23967836 CAGTTTCGAT
Statistics
Matches: 120, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
158 2 0.02
159 93 0.77
160 25 0.21
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (159 bp):
TTAGACATGGAATGAACTCCCTACGCCTAACACAACGCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCCAGAGAGGAACAATACACAAGCTGAGGATCGACCCAGTCCCCCTCTACGTGCTGTCGATCCC
ACTACCACAACCCTTGGTCTGGCTGGGGA
Found at i:23968046 original size:26 final size:26
Alignment explanation
Indices: 23968008--23968060 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23967998 GGCTCAAACT
*
23968008 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23968034 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23968060 C
1 C
23968061 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23968350 original size:197 final size:197
Alignment explanation
Indices: 23968007--23968366 Score: 542
Period size: 197 Copynumber: 1.8 Consensus size: 197
23967997 TGGCTCAAAC
** *
23968007 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
* * *
23968072 CACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGAGGTAGAATGCACAAACCGAGGATCGACC
66 CACGAAATGAGCGTGAGGGTGCTCAGCCGGCCAGAGAGGCAGAATGCACAAACCGAGGACCGACC
*
23968137 CGGTCCCCCACTGCGTGCTGCCAATCCTGCTGCTGGTCCTGCTGCCGTAACCTTTGGTCTGATCC
131 CGATCCCCCACTGCGTGCTGCCAATCCTGCTGCTGGTCCTGCTGCCGTAACCTTTGGTCTGATCC
23968202 GA
196 GA
* *
23968204 TCTTAGATTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
* * * * * * *
23968269 CACGAAATGAGCGTGAGGGTGCTCAGTCGTCCGGAGAGGCGGAATGCGCAAGCC-AGGGACCGGC
66 CACGAAATGAGCGTGAGGGTGCTCAGCCGGCCAGAGAGGCAGAATGCACAAACCGA-GGACCGAC
* *
23968333 CCGATCCCCCCCTGCGTGCTGTCAATCCTGCTGC
130 CCGATCCCCCACTGCGTGCTGCCAATCCTGCTGC
23968367 CGCAACCCTC
Statistics
Matches: 144, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
196 1 0.01
197 143 0.99
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (197 bp):
TCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
CACGAAATGAGCGTGAGGGTGCTCAGCCGGCCAGAGAGGCAGAATGCACAAACCGAGGACCGACC
CGATCCCCCACTGCGTGCTGCCAATCCTGCTGCTGGTCCTGCTGCCGTAACCTTTGGTCTGATCC
GA
Found at i:23968758 original size:26 final size:26
Alignment explanation
Indices: 23968707--23968759 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23968697 CTGGTCCGAT
**
23968707 CTTAGACTGGGAGTGAACTATGTATG
1 CTTAGACTGGGAGTGAACTACATATG
23968733 CTTAGACTGGG-GATGAACTACATATG
1 CTTAGACTGGGAG-TGAACTACATATG
23968759 C
1 C
23968760 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAGTGAACTACATATG
Found at i:23969122 original size:26 final size:26
Alignment explanation
Indices: 23969072--23969122 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
23969062 CCGATTCGAT
**
23969072 CTTAGACTAGGAATGAACTTTGTATC
1 CTTAGACTAGGAATGAACTCCGTATC
23969098 CTTAGAC-ATGGAATGAACTCCGTAT
1 CTTAGACTA-GGAATGAACTCCGTAT
23969123 GGCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATC
Found at i:23969202 original size:867 final size:866
Alignment explanation
Indices: 23968033--23969638 Score: 2054
Period size: 866 Copynumber: 1.9 Consensus size: 866
23968023 AACTCTGTAT
* **
23968033 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGCACTCAG
* *
23968098 CCGGCCAGAGAGGTAGAATGCACAAACCGAGGATCGACCCGGTCCCCCACTGCGTGCTGCCAATC
66 CCGGCCAGAGAGGCAGAATGCACAAACCGAGGATCGACCCGATCCCCCACTGCGTGCTGCCAATC
* * * *** * * *
23968163 CTGCTGCTGGTCCTGCTGCCGTAACCTTTGGTCTGATCCGATCTTAGATTGGGAATGAACTCCAT
131 CTGCTGCTGGTCCTACTGCCGCAACCCTCCATCCGATCCGATCTTAGACTAGGAATGAACTCCAT
* * * *
23968228 ATGCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAATGAGCGTGAGGGTGCTC
196 ATCCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCTC
** *
23968293 AGTCGTCCGGAGAGGCGGAATGCGCAAGCCAGGGACCGGCCCGATCCCCCCCTGCGTGCTGTCAA
261 AGTCGTCCGGAGAGGCACAATGCACAAGCCAGGGACCGGCCCGAT-CCCCCCTGCGTGCTGTCAA
23968358 TCCTGCTGCCGCAACCCTCAGTCC-AGTCTAATCTTAGACTGGAAATGAACTCCGTATGCCTAAG
325 TCCTGCTGCCGCAACCCTCAGTCCGAGTC-AATCTTAGACTGGAAATGAACTCCGTATGCCTAAG
* * ** ** * * ** *
23968422 TCGACCCACGAAACGAGTGTTTGGGCACTGAGCTTATCGGAGAGGCATAATGCGCAAGTTGGGGA
389 TCAACCCACGAAACGAGCGTACGGGCACTGAGCCGATCGGAGAGACATAATACGCAAGCCGAGGA
* * * * *
23968487 TTGACCCTG-TCCCCCTTTGCGTGCTACCGGTCCCACTGCCACAACCCTCAG-CCTGGCTGGGGC
454 TCGACCC-GATCCCCCTTTGCGTCCTACCGATCCCACTACCACAACCCTCAGTCC-AGCTGGGGC
* * *
23968550 TTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-TGGGCATGCGGG-AGCTTAG
517 TTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACT-GGCATGCGGGCA-CTCAA
* * *
23968613 CCGACCAGAGAGGCAGAATGCGTAAGCCGAGGA-TCGGTCT-GCTCC-CACTTGCGTTATGTCGA
580 CCGACCAGAGAGGCAGAATGCGTAAACCGAGGATTCGCT-TAG-TCCTC-CTTGCGTGATGTCGA
* * * * * *
23968675 TCCTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAGTGAACTATGTATGCTTAGAC
642 TCCTACTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTATGCATGCTTAGAC
*
23968740 TGGGGATGAACTAC-ATATGCCTAAGTCAACCCATGAAAAGAGCATACGGGCGCTCAGTCGGCCG
707 TAGGGATGAACT-CTATATGCCTAAGTCAACCCATGAAAAGAGCATACGGGCGCTCAGTCGGCCG
23968804 CTCCATAATGCACAAGTTGGGGATCAGCCTGGTCCCCCTCTACGTGCTGTCGATCCCGCTGTCGG
771 CTCCATAATGCACAAGTTGGGGATCAGCCTGGTCCCCCTCTACGTGCTGTCGATCCCGCTGTCGG
23968869 TCCTGCTACCACAACCCTCGGTCCAGCTGGG
836 TCCTGCTACCACAACCCTCGGTCCAGCTGGG
*
23968900 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGCACTCAG
* ** ** * * *
23968965 CCGGCCGGAGAGGCAGAATGCGTAAGTCGGGGATTCG-CCTGATCTCCCC-CTGCGTGCTGCCGA
66 CCGGCCAGAGAGGCAGAATGCACAAACCGAGGA-TCGACCCGATC-CCCCACTGCGTGCTGCCAA
* * **
23969028 TCCTGCTGCTGGTCCTACTGTCGCAACCCTCCATCCGATTCGATCTTAGACTAGGAATGAACTTT
129 TCCTGCTGCTGGTCCTACTGCCGCAACCCTCCATCCGATCCGATCTTAGACTAGGAATGAACTCC
* * *
23969093 GTATCCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACGAAACGAGCGT-ACGGGCG
194 ATATCCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGA-GGGCG
* * * *
23969157 CTCAG-CAAG-CCGGAGAGGTACAATGCACAAGTC-GAGGATCGGCCCGGTCCCCCCTGCGTGCT
258 CTCAGTC--GTCCGGAGAGGCACAATGCACAAGCCAG-GGACCGGCCCGATCCCCCCTGCGTGCT
* * ** * *
23969219 GTCGATCCTGCTGCCGCAATCCTTGGTCCGATTCAATCTTAGACTGGGAATGAACTCCGTATGCC
320 GTCAATCCTGCTGCCGCAACCCTCAGTCCGAGTCAATCTTAGACTGGAAATGAACTCCGTATGCC
* * *
23969284 TAAGTCAACCCATGAAATGAGCGTACGGGCGCTGAGCCGATCGGAGAGACATAATACGCAAGCCG
385 TAAGTCAACCCACGAAACGAGCGTACGGGCACTGAGCCGATCGGAGAGACATAATACGCAAGCCG
* ** ** * * *
23969349 AGGATCGATCCGATCCCCCTTTGCGTCCTGTCGATCCTGCTACCATAACCTTCGGTCCAGCTGGG
450 AGGATCGACCCGATCCCCCTTTGCGTCCTACCGATCCCACTACCACAACCCTCAGTCCAGCTGGG
* * * *
23969414 GCTTAGACATCGAATGAACTCCCTATGCCTTAGCCAACCCACGAAACTGGCGTGTGGGCACTCAA
515 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACTGGCATGCGGGCACTCAA
* * * *
23969479 CCGGCCGGAGAGGCAGAATGCGTAAACCGGGGATTCGCTTAGTCCTCCTTGCGTGCTGTCGATCC
580 CCGACCAGAGAGGCAGAATGCGTAAACCGAGGATTCGCTTAGTCCTCCTTGCGTGATGTCGATCC
** * *
23969544 TACTATTGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGCATGCTTAGACTAG
645 TACTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTATGCATGCTTAGACTAG
* *
23969609 GGATGAACTCTGTATGCCTAAGTCCACCCA
710 GGATGAACTCTATATGCCTAAGTCAACCCA
23969639 CAAAATGAGC
Statistics
Matches: 623, Mismatches: 101, Indels: 31
0.83 0.13 0.04
Matches are distributed among these distances:
865 2 0.00
866 353 0.57
867 260 0.42
868 8 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (866 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGCACTCAG
CCGGCCAGAGAGGCAGAATGCACAAACCGAGGATCGACCCGATCCCCCACTGCGTGCTGCCAATC
CTGCTGCTGGTCCTACTGCCGCAACCCTCCATCCGATCCGATCTTAGACTAGGAATGAACTCCAT
ATCCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCTC
AGTCGTCCGGAGAGGCACAATGCACAAGCCAGGGACCGGCCCGATCCCCCCTGCGTGCTGTCAAT
CCTGCTGCCGCAACCCTCAGTCCGAGTCAATCTTAGACTGGAAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTACGGGCACTGAGCCGATCGGAGAGACATAATACGCAAGCCGAGGATC
GACCCGATCCCCCTTTGCGTCCTACCGATCCCACTACCACAACCCTCAGTCCAGCTGGGGCTTAG
ACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACTGGCATGCGGGCACTCAACCGACC
AGAGAGGCAGAATGCGTAAACCGAGGATTCGCTTAGTCCTCCTTGCGTGATGTCGATCCTACTAC
CGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTATGCATGCTTAGACTAGGGATGA
ACTCTATATGCCTAAGTCAACCCATGAAAAGAGCATACGGGCGCTCAGTCGGCCGCTCCATAATG
CACAAGTTGGGGATCAGCCTGGTCCCCCTCTACGTGCTGTCGATCCCGCTGTCGGTCCTGCTACC
ACAACCCTCGGTCCAGCTGGG
Found at i:23969443 original size:159 final size:158
Alignment explanation
Indices: 23969098--23969460 Score: 392
Period size: 158 Copynumber: 2.3 Consensus size: 158
23969088 ACTTTGTATC
*
23969098 CTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
** * * * * *
23969163 AAGCCGGAGAGGTACAATGCACAAGTCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
66 AAGCCGGAGAGACACAATACACAAGCCGAGGATCGACCCGATCCCCCCTGCGTCCTGTCGATCCT
* * * *
23969228 GCTGCCGCAATCCTTGGTCCGATTCAAT
131 GCTACCACAATCCTTGGTCCGACTCAAG
* * * *
23969256 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * *
23969320 C-CGATCGGAGAGACATAATACGCAAGCCGAGGATCGATCCGATCCCCCTTTGCGTCCTGTCGAT
65 CAAG-CCGGAGAGACACAATACACAAGCCGAGGATCGACCCGATCCCCC-CTGCGTCCTGTCGAT
* ***
23969384 CCTGCTACCATAA-CCTTCGGTCC-AGCTGGGG
128 CCTGCTACCACAATCCTT-GGTCCGA-CTCAAG
* * *
23969415 CTTAGACATCGAATGAACTCCCTATGCCTTAGCCAACCCACGAAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
23969461 TGGCGTGTGG
Statistics
Matches: 167, Mismatches: 32, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 97 0.58
159 67 0.40
160 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
AAGCCGGAGAGACACAATACACAAGCCGAGGATCGACCCGATCCCCCCTGCGTCCTGTCGATCCT
GCTACCACAATCCTTGGTCCGACTCAAG
Found at i:23969602 original size:26 final size:26
Alignment explanation
Indices: 23969573--23969625 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23969563 CCGATCTGAT
23969573 CTTAGACT-GGGAATGAACTCTGCATG
1 CTTAGACTAGGG-ATGAACTCTGCATG
*
23969599 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCTGCATG
23969625 C
1 C
23969626 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCTGCATG
Found at i:23970853 original size:26 final size:26
Alignment explanation
Indices: 23970815--23970867 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23970805 GGCTCAAACT
*
23970815 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23970841 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23970867 C
1 C
23970868 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23971149 original size:197 final size:197
Alignment explanation
Indices: 23970814--23971173 Score: 524
Period size: 197 Copynumber: 1.8 Consensus size: 197
23970804 TGGCTCAAAC
** *
23970814 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
* * ** * * * *
23970879 CATGGAACGAGTGTGCGGGTGCTCAGTCGACCAGAGAGGCAGAATGCGTAAGCCGGGGATCGATC
66 CACGAAACGAGCATGAGGGTGCTCAGTCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACC
*
23970944 CGATCCCCCACTGCGTGCTATCGATCCTGCTGCTGGTCTTGCTGCCGTAACCCTCGGTCCAGTCT
131 CGATCCCCCACTACGTGCTATCGATCCTGCTGCTGGTCTTGCTGCCGTAACCCTCGGTCCAGTCT
23971009 GA
196 GA
* *
23971011 TCTTAGATTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
* ** * *
23971076 CACGAAATGAGCATGAGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGA-CTGGC
66 CACGAAACGAGCATGAGGGTGCTCAGTCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATC-GAC
*
23971140 CCTATCCCCCACTACGTGCTATCGATCCTGCTGC
130 CCGATCCCCCACTACGTGCTATCGATCCTGCTGC
23971174 CACAACCCTC
Statistics
Matches: 142, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
196 1 0.01
197 141 0.99
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (197 bp):
TCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
CACGAAACGAGCATGAGGGTGCTCAGTCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACC
CGATCCCCCACTACGTGCTATCGATCCTGCTGCTGGTCTTGCTGCCGTAACCCTCGGTCCAGTCT
GA
Found at i:23971339 original size:159 final size:155
Alignment explanation
Indices: 23971038--23971540 Score: 367
Period size: 159 Copynumber: 3.2 Consensus size: 155
23971028 ACTCCATATG
** * * * * *
23971038 CTTAGACAT-GGAATGAACTCTATATGCCTAAGCCAACCCACGAAATGAGCATGAGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTGAG
* * * * * * * * *
23971102 TCGGTCGGAGAGGCAGAATGCGCAAGC-CAGGGA-CTGGCCCTATCCCCCACTACGTG-C-TATC
65 CCAGCCGAAGAGGCAGAATGCGCAAGCGGA-GGATC-GACCCGATCCCCC-CT--GTGTCATGTA
* *
23971163 GATCCTGCTGCCACAACCCTCGATCCGCTCTGAT
125 GAT-CT--TGCCACAACCCTCGGTCCGCTCCGAT
* * * * *
23971197 CTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCGACCCATGAAACGAGCATTCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTGAGC
* * ** *
23971262 CAGTCGAAGAGGCATAATGCGCAAGCCGG-GGATCGACCCTG-TCCCCCTCTGTGTGTTGCTAGT
66 CAGCCGAAGAGGCAGAATGCGCAAG-CGGAGGATCGACCC-GATCCCCC-CTGTGTCATG-TAGA
* * **
23971325 TCCATTGCCACAACCCTCGGTCTGGCT-GGGG
127 T-C-TTGCCACAACCCTCGGTC-CGCTCCGAT
* * * ** *
23971356 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGAGCTTAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTGAG
* * * *
23971420 CCAGCCGGAGAGGCAGAATGCGCAAGTGGAGGATCGGCCCGATCCCCCCTGTGTCATGTCGATCT
65 CCAGCCGAAGAGGCAGAATGCGCAAGCGGAGGATCGACCCGATCCCCCCTGTGTCATGTAGATCT
* *
23971485 TGCTACCGCAACCCTCGGTCCGGTCCGAT
130 TG---CCACAACCCTCGGTCCGCTCCGAT
23971514 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
23971541 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 55, Indels: 37
0.75 0.15 0.10
Matches are distributed among these distances:
155 3 0.01
156 1 0.00
157 9 0.03
158 51 0.19
159 195 0.72
160 11 0.04
161 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (155 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTGAGC
CAGCCGAAGAGGCAGAATGCGCAAGCGGAGGATCGACCCGATCCCCCCTGTGTCATGTAGATCTT
GCCACAACCCTCGGTCCGCTCCGAT
Found at i:23971543 original size:26 final size:26
Alignment explanation
Indices: 23971514--23971566 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23971504 CCGGTCCGAT
23971514 CTTAGACTGGGAATGAACT-CCGTATG
1 CTTAGACTGGGAATGAACTACC-TATG
*
23971540 CTTAGACTGGGGATGAACTACCTATG
1 CTTAGACTGGGAATGAACTACCTATG
23971566 C
1 C
23971567 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACCTATG
Found at i:23972037 original size:870 final size:870
Alignment explanation
Indices: 23970844--23972488 Score: 2252
Period size: 870 Copynumber: 1.9 Consensus size: 870
23970834 CTGTATGCTT
* * * * **
23970844 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGGAACGAGTGTGCGGGTGCTCAGTCGA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGTGTGCGGGTACTCAACCGA
* * * * * *
23970909 CCAGAGAGGCAGAATGCGTAAGCCGGGGATCGATCCGATCCCCCACTGCGTGCTATCGATCCTGC
66 CCAGAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCACTGCATGCTACCGATCCTGC
* * * * * *
23970974 TGCTGGTCTTGCTGCCGTAACCCTCGGTCCAGTCTGATCTTAGATTGGGAATGAACTCCATATGC
131 TGCTGGTCCTACTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCATATCC
*
23971039 TTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAATGAGCATGAGGGTGCTCAGTC
196 TTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCATGAGGGTGCTCAGTC
** * *
23971104 GGTCGGAGAGGCAGAATGCGCAAGCCAGGGACTGGCCCTATCCCCCACTACGTGCTATCGATCCT
261 GACCGGAGAGGCAGAATGCACAAGCCAGGGACTGGCCCGATCCCCCACTACGTGCTATCGATCCT
* * *
23971169 GCTGCCACAACCCTCGATCCGCTCTGATCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCGAC
326 GCTACCACAACCCTCGATCCGCTCTGATCTTAGACTAGGAAAGAACTCCGTATGCCTAAGTCAAC
*
23971234 CCATGAAACGAGCAT-TCGGGCGCTGAGCCAGTC-GAAGAGGCATAATGCGCAAGCCGGGGATCG
391 CCATGAAACGAGCATGT-GGGCGCTGAGCC-GACAGAAGAGGCATAATGCGCAAGCCGGGGATCG
* * ** * * *
23971297 ACCCTGTCCCCCTCTGTGTGTTGCTAG-TTCCATTGCCACAACCCTCGGTCTGGCTGGGGCTTAG
454 ACCCGGTCCCCCTCTGCGTCCTGC-AGATCCCACTGCCACAACCCTCGGTCTGGCTAGGGCTTAG
* * * *
23971361 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG-AAATGGGTGTGCGGGAGCTTAGCCAGC
518 ACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAAACGGGCGTGCGGGAGCTCAGCCAGC
* ** * ** *
23971425 CGGAGAGGCAGAATGCGC-AAGTGGAGGATCGGCCCGATCCCCCCTGTGT-CATGTCGATCTTGC
583 CGGAAAGGCAGAATGCGCAAACCGG-GGATCGGCCCGAT-CCCCCTGCGTGC-TACCGATCCTGC
* *
23971488 TACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGA
645 TACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGGA
* * ** * *
23971553 TGAACTACC-TATGCCTAAGTCAACCCATGAAAAGAGCGTATGGGTGCTCAGCCGGCCGGAGAGG
710 TGAACT-CCGTATGCCTAAGTCAACCCACGAAAAGAGCGTACGGACGCTCAGCCGACCAGAGAGG
23971617 CATAATGCGCAAGCCGAGGATCAGCCTGGGCCCCCTCTACGTGCTGTCGATCTCGCTGTCGGTCC
774 CATAATGCGCAAGCCGAGGATCAGCCTGGGCCCCCTCTACGTGCTGTCGATCTCGCTGTCGGTCC
23971682 TACTGCCACAACCCTCGATCTGACTGGGGCTA
839 TACTGCCACAACCCTCGATCTGACTGGGGCTA
*
23971714 AGACATGGAATGAACTCCGTCTGCCTAAGCCAACCAATGAAACAAGTGTGCGGGTACTCAACCGA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGTGTGCGGGTACTCAACCGA
* * *
23971779 TC-GAAAAGGCAGAATGTGCAAGCCAGGGATCGGCCCGATCTCCCC-CTGCATGCTACCGATCCT
66 CCAG-AAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATC-CCCCACTGCATGCTACCGATCCT
* * *
23971842 GCTGCTGGTCCTACTGTCGCAACCCTCGATCCGGT-TCGATCTTAGACTGGGAATGAACTCCTTA
129 GCTGCTGGTCCTACTGCCGCAACCCTCGATCCAGTCT-GATCTTAGACTGGGAATGAACTCCATA
* * * * *
23971906 TCCTTAGACATGGAATGAACTCTGTATGGCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCA
193 TCCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCATGAGGGTGCTCA
* * *
23971971 GTCGACCGGAGAGGTAGAATGCACAAGCC-GAGGACTGGCCCGATCCACCC-CTGCGTGCTGTCG
258 GTCGACCGGAGAGGCAGAATGCACAAGCCAG-GGACTGGCCCGATCC-CCCACTACGTGCTATCG
* * *
23972034 ATCCTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
321 ATCCTGCTACCACAACCCTCGATCCGCTCTGATCTTAGACTAGGAAAGAACTCCGTATGCCTAAG
* ** * * * *
23972099 TCAACCCATGAAATGAGTGTGTGGGTGCTGAGTCGACAGGAGAGGCATAATGCGCAAGCTGGGGA
386 TCAACCCATGAAACGAGCATGTGGGCGCTGAGCCGACAGAAGAGGCATAATGCGCAAGCCGGGGA
* * *
23972164 TCGGCCCGGTCCCCCTCTGCGTCCTGCCGATCCCGCTGCCACAACCCTCGGTCTGGCTAGGGCTT
451 TCGACCCGGTCCCCCTCTGCGTCCTGCAGATCCCACTGCCACAACCCTCGGTCTGGCTAGGGCTT
* ** * *
23972229 AGACATGGAATGAACTCCCTATGCCTTAGCCAACCAATGAAAACGGGCGTGCGGGCTCTCAGTCG
516 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAAACGGGCGTGCGGGAGCTCAGCCA
*
23972294 GCTGGAAAGGCAGAATGCGCAAACCGGGGATCGGCCCGATCCCCCTGCGTGCTACCGATCCTGCT
581 GCCGGAAAGGCAGAATGCGCAAACCGGGGATCGGCCCGATCCCCCTGCGTGCTACCGATCCTGCT
* * * * *
23972359 GCCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGCATGCTTAGATTGGGGAT
646 ACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGGAT
* *
23972424 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGCCGACCAGAGAGGCA
711 GAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTACGGACGCTCAGCCGACCAGAGAGGCA
23972489 GGGTGCGCAA
Statistics
Matches: 669, Mismatches: 94, Indels: 24
0.85 0.12 0.03
Matches are distributed among these distances:
869 8 0.01
870 599 0.90
871 58 0.09
872 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (870 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGTGTGCGGGTACTCAACCGA
CCAGAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCACTGCATGCTACCGATCCTGC
TGCTGGTCCTACTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCATATCC
TTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCATGAGGGTGCTCAGTC
GACCGGAGAGGCAGAATGCACAAGCCAGGGACTGGCCCGATCCCCCACTACGTGCTATCGATCCT
GCTACCACAACCCTCGATCCGCTCTGATCTTAGACTAGGAAAGAACTCCGTATGCCTAAGTCAAC
CCATGAAACGAGCATGTGGGCGCTGAGCCGACAGAAGAGGCATAATGCGCAAGCCGGGGATCGAC
CCGGTCCCCCTCTGCGTCCTGCAGATCCCACTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAAACGGGCGTGCGGGAGCTCAGCCAGCCGG
AAAGGCAGAATGCGCAAACCGGGGATCGGCCCGATCCCCCTGCGTGCTACCGATCCTGCTACCGC
AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGGATGAACT
CCGTATGCCTAAGTCAACCCACGAAAAGAGCGTACGGACGCTCAGCCGACCAGAGAGGCATAATG
CGCAAGCCGAGGATCAGCCTGGGCCCCCTCTACGTGCTGTCGATCTCGCTGTCGGTCCTACTGCC
ACAACCCTCGATCTGACTGGGGCTA
Found at i:23972206 original size:159 final size:158
Alignment explanation
Indices: 23971908--23972403 Score: 581
Period size: 159 Copynumber: 3.1 Consensus size: 158
23971898 ACTCCTTATC
* *
23971908 CTTAGACATGGAATGAACTCTGTATGGCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
* * * * *
23971973 CGACCGGAGAGGTAGAATGCACAAGCCGAGGA-CTGGCCCGATCCACCCCTGCGTGCTGTCGATC
66 CGACAGGAGAGGCAGAATGCGCAAGCCGGGGATC-GGCCCGATCC-CCCCTGCGTGCTGCCGATC
*
23972037 CTGCTACCACAACCCTCGGTCCGGTCTGAT
129 CTGCTGCCACAACCCTCGGTCCGGTCTGAT
* * * * *
23972067 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGTGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * *
23972131 TCGACAGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTCCTGCCGATC
65 TCGACAGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGCCGATC
* * **
23972196 CCGCTGCCACAACCCTCGGTCTGG-CTAGGG
129 CTGCTGCCACAACCCTCGGTCCGGTCT-GAT
* * * *
23972226 CTTAGACATGGAATGAACTCCCTATGCCTTAGCCAACCAATGAAAACGGGCGTGCGGGCT-CTCA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG-AAACGAGCGTGCGGG-TGCTCA
* * * * *
23972290 GTCGGCTGGAAAGGCAGAATGCGCAAACCGGGGATCGGCCCGAT-CCCCCTGCGTGCTACCGATC
64 GTCGACAGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATC
** *
23972354 CTGCTGCCGTAACCCTCGGTCCAGTCTGAT
129 CTGCTGCCACAACCCTCGGTCCGGTCTGAT
23972384 CTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
23972404 TGCATGCTTA
Statistics
Matches: 282, Mismatches: 46, Indels: 19
0.81 0.13 0.05
Matches are distributed among these distances:
157 1 0.00
158 58 0.21
159 169 0.60
160 53 0.19
161 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
CGACAGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCT
GCTGCCACAACCCTCGGTCCGGTCTGAT
Found at i:23972436 original size:26 final size:26
Alignment explanation
Indices: 23972384--23972436 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23972374 CCAGTCTGAT
*
23972384 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* * *
23972410 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
23972436 C
1 C
23972437 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:23973610 original size:26 final size:26
Alignment explanation
Indices: 23973572--23973624 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
23973562 GGCTCAAACT
23973572 CTTAGACTAGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
23973598 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCTGTATG
23973624 C
1 C
23973625 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:23975078 original size:159 final size:157
Alignment explanation
Indices: 23974672--23975102 Score: 431
Period size: 159 Copynumber: 2.7 Consensus size: 157
23974662 TCCTTAAACG
* * * *
23974672 TGGAATGAACTCTGTATGGCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGAA
1 TGGAATGAACTCCGTATGGCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGA
* * * * * * * ** *
23974737 GAGGTAGAATGCGTAAGTCGAGGA-CTAGCCCAGTCCCCCCTACGTGCTGTCGATCCTACTGTCG
66 GAGGCAGAATGCGCAAGTCGGGGATCGA-CCCGGTCCCCCCTACGTGCTGCCGATCCCACTACCA
*
23974801 CAACCCTCGATCCGGTCCGATCTTAGAC
130 CAACCCTCGATCCGGTCCGAGCTTAGAC
* * ***
23974829 TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTGAGCCAACCGG
1 T-GGAATGAACTCCGTATGGCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGTCGG
* * * * * * *
23974894 AGAGGCATAATACGCAAGCCAGGGATCGACCCGGTCCCTCTCTGCGTGCTGCC-AGTCCCGCTAC
65 AGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCC-CCCTACGTGCTGCCGA-TCCCACTAC
* * *
23974958 CACAACCCTC-AGTCTGG-CTGGGGCTTAGAC
128 CACAACCCTCGA-TCCGGTC-CGAGCTTAGAC
* * *
23974988 ATGGAATGAACTCCCTATGGCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGCCGGTTGG
1 -TGGAATGAACTCCGTATGGCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGTCGG
* * *
23975053 AGAGGCAGAATGCAG-AAGTCGGGGATCGGCCCGATCCCCCTTACGTGCTG
65 AGAGGCAGAATGC-GCAAGTCGGGGATCGACCCGGTCCCCCCTACGTGCTG
23975103 TTGAGTTGGC
Statistics
Matches: 219, Mismatches: 47, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 92 0.42
159 124 0.57
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (157 bp):
TGGAATGAACTCCGTATGGCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGA
GAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTACGTGCTGCCGATCCCACTACCAC
AACCCTCGATCCGGTCCGAGCTTAGAC
Found at i:23978885 original size:26 final size:26
Alignment explanation
Indices: 23978856--23978908 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
23978846 CCGGTCTGAT
23978856 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
23978882 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23978908 C
1 C
23978909 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23979643 original size:159 final size:158
Alignment explanation
Indices: 23979354--23979678 Score: 359
Period size: 159 Copynumber: 2.1 Consensus size: 158
23979344 CCTCACTACG
* * * * * *
23979354 TGCTGTCGATCCTATTGCCACAACCCTCAGTTCAGTCTGATCTTAGACTGGGAATGAACTTCGTA
1 TGCTGTCGATCCCACTACCACAACCCTCAGTTCAGTCTGAGCTTAGACTGGGAATGAACTCCCTA
** * * * * * * ** *
23979419 TGCCTAAGTTAACCCACGAAATGAGCATTCAGGCATTGAGCCGACCGGAGAGGCATAATGCGTAA
66 TGCCTAAGCCAAACCACAAAATGAGCATACAGGCACTCAGCCGACCAGAGACACAGAATGCGTAA
*
23979484 GTCGAGGATCGACCCAATCCCCTTCTGCA
131 GTCGAGGATCGACCCAATCCCC-CCTGCA
* *
23979513 TGCTGTCGATCCCACTACCACAACCCTCGGTTCAG-CTGGGGCTTAGACAT-GGAATGAACTCCC
1 TGCTGTCGATCCCACTACCACAACCCTCAGTTCAGTCT-GAGCTTAGAC-TGGGAATGAACTCCC
* *
23979576 TATGCCTAAGCCAAACCACAAAATGAGCATACGGGCGCTCAGCC-AGCCAGAGACACAGAATGCG
64 TATGCCTAAGCCAAACCACAAAATGAGCATACAGGCACTCAGCCGA-CCAGAGACACAGAATGCG
* * * *
23979640 TAAGTCGGGGATCGACTCAGTCCCCCCTGCG
128 TAAGTCGAGGATCGACCCAATCCCCCCTGCA
23979671 TGCTGTCG
1 TGCTGTCG
23979679 CAACCCTTGG
Statistics
Matches: 137, Mismatches: 26, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
158 15 0.11
159 121 0.88
160 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.21
Consensus pattern (158 bp):
TGCTGTCGATCCCACTACCACAACCCTCAGTTCAGTCTGAGCTTAGACTGGGAATGAACTCCCTA
TGCCTAAGCCAAACCACAAAATGAGCATACAGGCACTCAGCCGACCAGAGACACAGAATGCGTAA
GTCGAGGATCGACCCAATCCCCCCTGCA
Found at i:23979729 original size:26 final size:26
Alignment explanation
Indices: 23979700--23979752 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23979690 CCGGTTCGAT
*
23979700 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
23979726 CTTAGACTGGGGATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
23979752 C
1 C
23979753 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:23980123 original size:26 final size:26
Alignment explanation
Indices: 23980079--23980131 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23980069 TCAATCCGAT
23980079 CTTAGACTGGAAATAAACTCCATATG
1 CTTAGACTGGAAATAAACTCCATATG
* *
23980105 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATAAACTCCATATG
23980131 C
1 C
23980132 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATAAACTCCATATG
Found at i:23980313 original size:26 final size:26
Alignment explanation
Indices: 23980275--23980330 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
23980265 CCGATCTGAT
*
23980275 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23980301 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23980327 CTTA
1 CTTA
23980331 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23980335 original size:196 final size:195
Alignment explanation
Indices: 23979909--23980356 Score: 592
Period size: 196 Copynumber: 2.3 Consensus size: 195
23979899 TTCGGCTGGG
* * * **
23979909 GCTTAGACGTGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTACGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
* *
23979974 TCGACCAGAGAGGCAGAATGCGTAAGCTGGGGATCAGCCAGTCCCCCCTGCGTGCTGCCAATCCT
66 TCGACCAGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCAGTCCCCCCTACGTGCTGCCAATCCT
* * ** * *
23980039 GCTGCTGGTCCTGCTACCGTAACCCTTGGTTCAATCCGATCTTAGACTGGAAATAAACTCCATAT
131 GCTGCTGATCCTACTACCACAACCCTTGATCCAATCCGATCTTAGACTGGAAATAAACTCCATAT
*
23980104 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
** * * * * * *
23980169 TCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCAGTCCCCCCTATGTGCTGTCGATCT
66 TCGACCAGAGAGGCAGAATGCGTAAGCCGGGGATCAG-CCAGTCCCCCCTACGTGCTGCCAATCC
* * * * * *
23980234 TGCTGCTGATCCTACTATCACAACCCTCT-ATCCGATCTGATCTTAGACTGGGAATGAACTCCTT
130 TGCTGCTGATCCTACTACCACAACCCT-TGATCCAATCCGATCTTAGACTGGAAATAAACTCCAT
23980298 AT
194 AT
* * *
23980300 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAATCGAGCGTACGG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGG
23980357 ATGCTCAACC
Statistics
Matches: 219, Mismatches: 32, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
195 91 0.42
196 127 0.58
197 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (195 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
TCGACCAGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCAGTCCCCCCTACGTGCTGCCAATCCT
GCTGCTGATCCTACTACCACAACCCTTGATCCAATCCGATCTTAGACTGGAAATAAACTCCATAT
Found at i:23980377 original size:196 final size:195
Alignment explanation
Indices: 23979909--23980421 Score: 591
Period size: 196 Copynumber: 2.6 Consensus size: 195
23979899 TTCGGCTGGG
* * * *
23979909 GCTTAGACGTGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTACGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * *
23979974 TCGACCAGAGAGGCAGAATGCGTAAGCTGGGGATCAG-CCAGTCCCCCCTGCGTGCTGCCAATCC
66 TCG-TCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCAGTCCCCCCTACGTGCTGCCAATCC
* * ** * *
23980038 TGCTGCTGGTCCTGCTACCGTAACCCTTGGTTCAATCCGATCTTAGACTGGAAATAAACTCCATA
130 TGCTGCTGATCCTACTACCACAACCCTTGATCCAATCCGATCTTAGACTGGAAATAAACTCCATA
23980103 T
195 T
* *
23980104 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * *
23980169 TCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCAGTCCCCCCTATGTGCTGTCGATCT
66 TC-GTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCAGTCCCCCCTACGTGCTGCCAATCC
* * * * * *
23980234 TGCTGCTGATCCTACTATCACAACCCTCT-ATCCGATCTGATCTTAGACTGGGAATGAACTCCTT
130 TGCTGCTGATCCTACTACCACAACCCT-TGATCCAATCCGATCTTAGACTGGAAATAAACTCCAT
23980298 AT
194 AT
* * * ** *
23980300 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAATCGAGCGTACGGATGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * * * * * *
23980365 CCAGTTGGAGAGGGAGAATGGGCAAGCCGAGGATCGACCCGGT-CCCCCTGCGTGCTG
66 TC-GTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCAGTCCCCCCTACGTGCTG
23980422 TTGAACCTGC
Statistics
Matches: 269, Mismatches: 46, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
195 102 0.38
196 166 0.62
197 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (195 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
TCGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCAGTCCCCCCTACGTGCTGCCAATCCT
GCTGCTGATCCTACTACCACAACCCTTGATCCAATCCGATCTTAGACTGGAAATAAACTCCATAT
Found at i:23980805 original size:26 final size:26
Alignment explanation
Indices: 23980773--23980825 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23980763 CGGATATGAT
*
23980773 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23980799 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23980825 C
1 C
23980826 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23982584 original size:26 final size:27
Alignment explanation
Indices: 23982547--23982600 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
23982537 ATGGGCACTC
* *
23982547 AGCCGACTAGAGAGGCAGAATG-CGCA
1 AGCCGACCAGAGAGACAGAATGCCGCA
23982573 AGCCGACCAGAGAGACAGAATGCCGCA
1 AGCCGACCAGAGAGACAGAATGCCGCA
23982600 A
1 A
23982601 CCCTCGATCC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.37, C:0.26, G:0.31, T:0.06
Consensus pattern (27 bp):
AGCCGACCAGAGAGACAGAATGCCGCA
Found at i:23983164 original size:26 final size:26
Alignment explanation
Indices: 23983121--23983175 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
23983111 CTCTGCGTGC
* *
23983121 TGCTTAGACTGGGAATGAAGTCCGTA
1 TGCTTAGACTGGGAATGAACTCCATA
23983147 TGCTTAGACTAGGG-ATGAACTCCATA
1 TGCTTAGACT-GGGAATGAACTCCATA
23983173 TGC
1 TGC
23983176 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TGCTTAGACTGGGAATGAACTCCATA
Found at i:23983477 original size:171 final size:171
Alignment explanation
Indices: 23983161--23983481 Score: 394
Period size: 171 Copynumber: 1.9 Consensus size: 171
23983151 TAGACTAGGG
** * *
23983161 ATGAACTCCATATGCCTAAGTCAACGCACGAAACGAGCATGCAGGCGTTCAACCGATCGGAGAGG
1 ATGAACTCCATATGCCTAAACCAACCCACGAAACGAGCATGCAGGCGCTCAACCGATCGGAGAGG
* * *
23983226 CATAATGCGCAAGTCAGGGATCAGCCCGATCCCTCTCTGCATGCTGTCGATCCCGCTGCCGATCC
66 CAGAATGCGAAAGTCAGGGATCAGCCCGATCCCTCTCTGCAGGCTGTCGATCCCGCTGCCGATCC
* *
23983291 TGCTGCCATAACCCTCGGTCCGACTGGGGCTTAAACATGGA
131 TGCTACCACAACCCTCGGTCCGACTGGGGCTTAAACATGGA
* * * * ** *
23983332 ATGAACTCCATATGCCTAAACCAACCCATGAAATGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGG
1 ATGAACTCCATATGCCTAAACCAACCCACGAAACGAGCATGCAGGCGCTCAACCGATCGGAGAGG
* * * ** *
23983397 CAGAATGCGAAAG-CTGGGGATCAGCCCGGTCCC-CTCTGCCAGGCTGTCGATCCTGCTGTTGGT
66 CAGAATGCGAAAGTC-AGGGATCAGCCCGATCCCTCTCTG-CAGGCTGTCGATCCCGCTGCCGAT
**
23983460 CCTGCTACTGCAACCCTCGGTC
129 CCTGCTACCACAACCCTCGGTC
23983482 TGATCTGATC
Statistics
Matches: 124, Mismatches: 24, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
170 6 0.05
171 118 0.95
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (171 bp):
ATGAACTCCATATGCCTAAACCAACCCACGAAACGAGCATGCAGGCGCTCAACCGATCGGAGAGG
CAGAATGCGAAAGTCAGGGATCAGCCCGATCCCTCTCTGCAGGCTGTCGATCCCGCTGCCGATCC
TGCTACCACAACCCTCGGTCCGACTGGGGCTTAAACATGGA
Found at i:23984032 original size:26 final size:26
Alignment explanation
Indices: 23983994--23984047 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
23983984 TCGGTCTGAT
23983994 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
23984020 CTTAGA-TATGGAATGAACTTCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
23984046 CT
1 CT
23984048 AAAGCCAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:23984144 original size:184 final size:184
Alignment explanation
Indices: 23983835--23984204 Score: 467
Period size: 184 Copynumber: 2.0 Consensus size: 184
23983825 TCCAGCTGGG
* * ** *
23983835 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGAGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGAGGGCGCTCAA
* * * * *
23983900 CCGACCCGAGAGGGAAAATGCACAAGCCAGGGATCGGCCCGGTCCCCACTGCATGCTGTCGATCC
66 CCGACCCGAGAGGCAAAATGCACAAGCCAAGGACCGGCCCGATCCCCACTACATGCTGTCGATCC
* *
23983965 TGCTACCGTAACCCTCGGT-TCGGTCTGATCTTAGACTAGGAATGAACTCCATAT
131 TGCTACCGCAACCCTCAGTCT-GGTCTGATCTTAGACTAGGAATGAACTCCATAT
* * *
23984019 GCTTAGATATGGAATGAACTTCATATG-CTAAAGCCAACCCACGAAACGAACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCT-AAGCCAACCCACGAAACGAACGTGAGGGCGCTCA
* * * * *
23984083 ATCGGCCGGAGAGGCAGAATGCACAAGCCAAGGACCGGCCCGATCCGCC-CTACGTGCTGTCGAT
65 ACCGACCCGAGAGGCAAAATGCACAAGCCAAGGACCGGCCCGATCC-CCACTACATGCTGTCGAT
* * * * *
23984147 CTTGCTGCTGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
129 CCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATAT
23984203 GC
1 GC
23984205 CTAAGTCAAC
Statistics
Matches: 158, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
183 2 0.01
184 153 0.97
185 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.19
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGAGGGCGCTCAA
CCGACCCGAGAGGCAAAATGCACAAGCCAAGGACCGGCCCGATCCCCACTACATGCTGTCGATCC
TGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATAT
Found at i:23984257 original size:501 final size:500
Alignment explanation
Indices: 23983149--23984609 Score: 1352
Period size: 501 Copynumber: 2.9 Consensus size: 500
23983139 AGTCCGTATG
* * * * **
23983149 CTTAGACTAGGG-ATGAACTCCATATGCCTAAGTCAACGCACGAAACGAGCATGCAGGCGTTCAA
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAAGCACT-AA
* * * * *
23983213 CCGATCGGAGAGGCATAATGCGCAAGTCAGGGATC-AGCCCGATCCCTCTCTGCATGCTGTCGAT
64 GCAATCGGAGAGGCATAATGCACAAGCCAGGGATCGA-CCCGAT-CC-C-C--C-T-CT-ACG-T
* ** * * *
23983277 CCCGCTGCCGATCCTGCTGCCATAACCCTCGGTCCGACTGGGGCTTAAACATGGAATGAACTCCA
119 ---GCTACCGATCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCC
* * **
23983342 TATGCCTAAACCAACCCATGAAATGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGA
181 TATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGC-A
** * * * *
23983407 -AAGCTGGGGATCAGCCCGGTCCCCTCTGCCAGGCTGTCGATCCTGCTGTTGGTCCTGCTACTGC
245 CAAGCCAGGGATCGGCCCGGTCCCCACTG-CATGCTGTCGATCCTGC---T--ACC-G----T--
* * * * *
23983471 AACCCTCGG-TCTGATCTGATCTTAGATTGGGAAAGAACTTCCGCATGCTTAGACATGGAATGAA
297 AACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATGAAC-TCCGTATGCTTAGATATGGAATGAA
* * * * * * *
23983535 CTCCGCATACCTAAGCCAACCCACGAAATGAGCGTACAGGCACT-TAGCTGGCCGGAGAGGTAGA
360 CT-C-CATAGCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAGCTGGCCGGAGAGGCAGA
* ** * ** *
23983599 ATGCGCAAGTTAGGGACCGGCCCAGTCCCCCCCTGTGTGCTGTCGATCCTGCTATCGGAACCCTC
423 ATGCACAAGCCAAGGACCGGCCCAGTCCCCCCCTACGTGCTGTCGATCCTGCTATCGCAACCCTC
*
23983664 GGTCCGATCCGAT
488 AGTCCGATCCGAT
** * *
23983677 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATTAGTGTTCAAGCACTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAAGCACTAAG-
* * ** * * * * *
23983742 CGATTGGAGAGGCATAATGCGTAAGCCAGGGATCGACCCGGTCTCCCTTTGCGTGCTATCGATCC
65 CAATCGGAGAGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCTACCGATCC
*
23983807 CACTGCCACAACCCTCGATCC-AGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CACTGCCACAACCCTCGGTCCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * *
23983871 ACCCATGAAACGGGCGTGAGGGCGCTCAGCCGACCCGAGAGGGAAAATGCACAAGCCAGGGATCG
194 ACCCATGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCG
23983936 GCCCGGTCCCCACTGCATGCTGTCGATCCTGCTACCGTAACCCTCGGTTCGGTCTGATCTTAGAC
259 GCCCGGTCCCCACTGCATGCTGTCGATCCTGCTACCGTAACCCTCGGTTCGGTCTGATCTTAGAC
* * *
23984001 TAGGAATGAACTCCATATGCTTAGATATGGAATGAACTTCATATGCTAAAGCCAACCCACGAAAC
324 TGGGAATGAACTCCGTATGCTTAGATATGGAATGAACTCCATA-GCT-AAGCCAACCCACGAAAC
* *
23984066 GAACGTGCGGGCGCTCAATC-GGCCGGAGAGGCAGAATGCACAAGCCAAGGACCGGCCC-GAT-C
387 GAGCGTGCGGGCGCTCAAGCTGGCCGGAGAGGCAGAATGCACAAGCCAAGGACCGGCCCAG-TCC
* * * * * *
23984128 CGCCCTACGTGCTGTCGATCTTGCT-GCTGCAACCCTCAGTCTGGTCTGAT
451 CCCCCTACGTGCTGTCGATCCTGCTATC-GCAACCCTCAGTCCGATCCGAT
** *
23984178 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAAGCACTAAGC
* * * * *
23984242 AATGCCGGAGAGGCATAATGCACCAGCCGGGGATCGGCCCGATCCCCCTCTACGTGTTACCGGTC
66 AAT--CGGAGAGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCTACCGATC
* * * * *
23984307 CCGCTACCAGAACCCTCGGTCCGACTGGGGCTTGGACATGGAATAAACTCCCTATGCCTAAGCCA
129 CCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * *
23984372 ACCCATGAAATGAGTGTGCGGGCGCTCAGCC-AGCTGGAGAGGCAGAATACGCAAG-CAGGGGAT
194 ACCCATGAAATGAGCGTGCGGGCGCTCAGCCGA-CCGGAGAGGCAGAATGCACAAGCCA-GGGAT
* * ** * * * *
23984435 CGGCTCGGTCCCCCCTGCATG-TGTCGATCCTGCTGTCGCAACCCTCGATCCAGTCTGATCTTAG
257 CGGCCCGGTCCCCACTGCATGCTGTCGATCCTGCTACCGTAACCCTCGGTTCGGTCTGATCTTAG
* * * * * * *
23984499 ACTGGGAATGAACTTCGTATTCTTAGACT-GGGGATGAACTCCGTACGCCTAAGTCAACCCATGA
322 ACTGGGAATGAACTCCGTATGCTTAGA-TATGGAATGAACTCCATA-G-CTAAGCCAACCCACGA
* * * * * *
23984563 AACGAGCGTGCGGACGCTC-AGCTGACCAGAAAGGCAGGATGCGCAAG
384 AACGAGCGTGCGGGCGCTCAAGCTGGCCGGAGAGGCAGAATGCACAAG
23984610 TCGGGAATCG
Statistics
Matches: 777, Mismatches: 137, Indels: 66
0.79 0.14 0.07
Matches are distributed among these distances:
499 4 0.01
500 129 0.17
501 273 0.35
502 86 0.11
503 33 0.04
504 2 0.00
505 1 0.00
509 1 0.00
510 2 0.00
512 1 0.00
515 18 0.02
516 129 0.17
519 1 0.00
520 2 0.00
521 1 0.00
522 1 0.00
523 1 0.00
525 1 0.00
526 1 0.00
527 6 0.01
528 83 0.11
529 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (500 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAAGCACTAAGC
AATCGGAGAGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCTACCGATCCC
ACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCATGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGGC
CCGGTCCCCACTGCATGCTGTCGATCCTGCTACCGTAACCCTCGGTTCGGTCTGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGATATGGAATGAACTCCATAGCTAAGCCAACCCACGAAACGAGC
GTGCGGGCGCTCAAGCTGGCCGGAGAGGCAGAATGCACAAGCCAAGGACCGGCCCAGTCCCCCCC
TACGTGCTGTCGATCCTGCTATCGCAACCCTCAGTCCGATCCGAT
Found at i:23984529 original size:26 final size:26
Alignment explanation
Indices: 23984493--23984543 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
23984483 TCCAGTCTGA
*
23984493 TCTTAGACTGGGAATGAACTTCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
*
23984519 TCTTAGACTGGGGATGAACTCCGTA
1 TCTTAGACTGGGAATGAACTCCGTA
23984544 CGCCTAAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:23985348 original size:26 final size:26
Alignment explanation
Indices: 23985319--23985377 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
23985309 TTGCATGCTA
* *
23985319 CCGATCCTGTTGCCGTAACCCTCGGT
1 CCGATCCTATTGCCGCAACCCTCGGT
*
23985345 CCGATCCTATTGTCGCAACCCTCGGT
1 CCGATCCTATTGCCGCAACCCTCGGT
23985371 CCGATCC
1 CCGATCC
23985378 GATCTTAGAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.14, C:0.41, G:0.20, T:0.25
Consensus pattern (26 bp):
CCGATCCTATTGCCGCAACCCTCGGT
Found at i:23985432 original size:26 final size:26
Alignment explanation
Indices: 23985381--23985433 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23985371 CCGATCCGAT
**
23985381 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
23985407 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
23985433 C
1 C
23985434 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23985920 original size:26 final size:26
Alignment explanation
Indices: 23985882--23985935 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
23985872 TCGGTCTGAT
23985882 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
23985908 CTTAGA-TATGGAATGAACTTCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
23985934 CT
1 CT
23985936 AAAGCCAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:23986032 original size:184 final size:184
Alignment explanation
Indices: 23985723--23986085 Score: 469
Period size: 184 Copynumber: 2.0 Consensus size: 184
23985713 TCCAGCTGGG
* * ** *
23985723 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGAGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGAGGGCGCTCAA
* * * *
23985788 CCGACCCGAGAGGGAAAATGCACAAGCCAGGGATCGGCCCGGTCCCCACTGCATGCTGTCGATCC
66 CCGACCCGAGAGGGAAAATGCACAAGCCAAGGACCGGCCCGATCCCCACTACATGCTGTCGATCC
* *
23985853 TGCTACCGTAACCCTCGGT-TCGGTCTGATCTTAGACTAGGAATGAACTCCATAT
131 TGCTACCGCAACCCTCAGTCT-GGTCTGATCTTAGACTAGGAATGAACTCCATAT
* * *
23985907 GCTTAGATATGGAATGAACTTCATATG-CTAAAGCCAACCCACGAAACGAACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCT-AAGCCAACCCACGAAACGAACGTGAGGGCGCTCA
* * * * * * *
23985971 ATCGGCCGGAGAGGTAGAATGCACAAGCCAAGGACCGGCCCGATCCCCCCTACGTGCTGTCGATC
65 ACCGACCCGAGAGGGAAAATGCACAAGCCAAGGACCGGCCCGATCCCCACTACATGCTGTCGATC
* * * *
23986036 TTGCTGCTGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTC
130 CTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTC
23986086 TGTATGCCTA
Statistics
Matches: 152, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
183 2 0.01
184 149 0.98
185 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGAGGGCGCTCAA
CCGACCCGAGAGGGAAAATGCACAAGCCAAGGACCGGCCCGATCCCCACTACATGCTGTCGATCC
TGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATAT
Found at i:23986369 original size:501 final size:501
Alignment explanation
Indices: 23985346--23986402 Score: 1264
Period size: 501 Copynumber: 2.1 Consensus size: 501
23985336 ACCCTCGGTC
* * * * **
23985346 CGATCCTATTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTA
1 CGATCCTACTGTCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTA
* *
23985411 GACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGCTGGT
66 GACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAACATACGGGCGCTCAGCTGGC
** ** * * * *
23985476 CGGAGAGGCAGAATGTGCAAGCCGCGGACCGATCAGGTCCCCCCTGCATGCTGTCGATCCTGTTG
131 CGGAGAGGCAGAATGCACAAGCCAAGGACCGACCAGATCCCCCCTACATGCTGTCGATCCTGCTG
*
23985541 CTGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
196 CTGCAACCCTCAGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
** * * ** * **
23985606 GAAATTAGTGTTCAAGCACTAAGCCGATTGGAGAGGCATAATGCGTAAGCCAGGGATCGACCCGG
261 GAAACGAGCGTGCAAGCACTAAGCCGACCGAAGAGGCATAATGCACAAGCCAGGGATCGACCCGG
* ** *
23985671 TCTCCCTTTGCGTGCTATTGATCCCACTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGA
326 TCTCCCTTTACGTGCTACCGATCCCACTACCACAACCCTCGATCCAGCTGGGGCTTAGACATGGA
* *
23985736 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGAGGGCGCTCAGCCGACCCGAGAGG
391 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCTCAGCCGACCCGAGAGG
* * * * *
23985801 GAAAATGCACAAGCCAGGGATCGGCCCGGTCCCCACTGCATGCTGT
456 CAAAATACACAAGCCAGGGATCAGCCCGATCCCCACTACATGCTGT
* ** * *
23985847 CGATCCTGCTACCGTAACCCTCGGTTCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTA
1 CGATCCTACTGTCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTA
* * * * * *
23985912 GATATGGAATGAACTTCATATG-CTAAAGCCAACCCACGAAACGAACGTGCGGGCGCTCA-ATCG
66 GACATGGAATGAACTCCATATGCCT-AAGCCAACCCACAAAACGAACATACGGGCGCTCAGCT-G
* * * * *
23985975 GCCGGAGAGGTAGAATGCACAAGCCAAGGACCGGCCCGATCCCCCCTACGTGCTGTCGATCTTGC
129 GCCGGAGAGGCAGAATGCACAAGCCAAGGACCGACCAGATCCCCCCTACATGCTGTCGATCCTGC
* *
23986040 TGCTGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
194 TGCTGCAACCCTCAGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * **
23986105 ATGAAACGAGCGTGCAGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCCGGGGATCGATTC
259 ACGAAACGAGCGTGCAAGCACTAAGCCGACCGAAGAGGCATAATGCACAAGCCAGGGATCGACCC
* * ** * *
23986170 GGTC-CTCTTCTACGTGCTACCGATCCCGCTACCGTAACCCTC-AGTTCGGCTGGGGCTTAGACA
324 GGTCTCCCTT-TACGTGCTACCGATCCCACTACCACAACCCTCGA-TCCAGCTGGGGCTTAGACA
* * * *
23986233 TGGAATGAACTCCCTATGTCTAAGCCAACCCACGAAACGAGCGTGCA-GGTGCTCAGTCG-CCTG
387 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTG-AGGGCGCTCAGCCGACC-C
* * ** * * *
23986296 GAGAGGCAGAATACGCAAGCTTGGGATCAGCTCGATCCCCCCTACGTGCTGT
450 GAGAGGCAAAATACACAAGCCAGGGATCAGCCCGATCCCCACTACATGCTGT
* * * *
23986348 CGATCCTACCGTCGCAACCCTC-GATCTAGTCTGATCTTAGACTGGGAATAAACTC
1 CGATCCTACTGTCGCAACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATGAACTC
23986403 TGTATGCCTA
Statistics
Matches: 462, Mismatches: 87, Indels: 14
0.82 0.15 0.02
Matches are distributed among these distances:
500 13 0.03
501 448 0.97
502 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (501 bp):
CGATCCTACTGTCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTA
GACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAACATACGGGCGCTCAGCTGGC
CGGAGAGGCAGAATGCACAAGCCAAGGACCGACCAGATCCCCCCTACATGCTGTCGATCCTGCTG
CTGCAACCCTCAGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCAAGCACTAAGCCGACCGAAGAGGCATAATGCACAAGCCAGGGATCGACCCGG
TCTCCCTTTACGTGCTACCGATCCCACTACCACAACCCTCGATCCAGCTGGGGCTTAGACATGGA
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCTCAGCCGACCCGAGAGG
CAAAATACACAAGCCAGGGATCAGCCCGATCCCCACTACATGCTGT
Found at i:23986420 original size:158 final size:156
Alignment explanation
Indices: 23985941--23986482 Score: 461
Period size: 158 Copynumber: 3.4 Consensus size: 156
23985931 ATGCTAAAGC
* * * * * *
23985941 CAACCCACGAAACGAACGTGCGGGCGCTCAATCGGCCGGAGAGGTAGAATGCACAAGCCAAGGAC
1 CAACCCACGAAACGAGCGTGCAGGCGCTCAGTC-GCCGGAGAGGCAGAATGCACAAGCCAGGGAT
* * * * *
23986006 CGGCCCGATCCCCCCTACGTGCTGTCGATCTTGCTG-CTGCAACCCTCAGTCTGGTCTGATCTTA
65 C-GCTCGATCCCCCCTACGTGCTGTCGATCCTACCGTC-GCAACCCTCAGTCTAGTCTGATCTTA
23986070 GACTGGGAATGAACTCTGTATGCCTAAGT
128 GACTGGGAATGAACTCTGTATGCCTAAGT
* * * * * * *
23986099 CAACCCATGAAACGAGCGTGCAGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCCGGGGAT
1 CAACCCACGAAACGAGCGTGCAGGCGCTCAGTCG-CCGGAGAGGCAGAATGCACAAGCCAGGGAT
* * ** ** * * **
23986164 CGATTCGGTCCTCTTCTACGTGCTACCGATCCCGCTACCGT---AACCCTCAGT-TCGGCTGGGG
65 CG-CTCGATCC-CCCCTACGTGCTGTCGAT--C-CTACCGTCGCAACCCTCAGTCTAGTCT-GAT
** * *
23986225 CTTAGACAT-GGAATGAACTCCCTATGTCTAAGC
124 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGT
* * * **
23986258 CAACCCACGAAACGAGCGTGCAGGTGCTCAGTCGCCTGGAGAGGCAGAATACGCAAGCTTGGGAT
1 CAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGCC-GGAGAGGCAGAATGCACAAGCCAGGGAT
23986323 CAGCTCGATCCCCCCTACGTGCTGTCGATCCTACCGTCGCAACCCTC-GATCTAGTCTGATCTTA
65 C-GCTCGATCCCCCCTACGTGCTGTCGATCCTACCGTCGCAACCCTCAG-TCTAGTCTGATCTTA
*
23986387 GACTGGGAATAAACTCTGTATGCCTAAGT
128 GACTGGGAATGAACTCTGTATGCCTAAGT
* * * * ** * * *
23986416 CAACCCATGAAACGAGTGTG-TGAACGCTCAACCGACCAGAGAGGCAGGATGCGCAAGCCAGGGA
1 CAACCCACGAAACGAGCGTGCAG-GCGCTCAGTCG-CCGGAGAGGCAGAATGCACAAGCCAGGGA
23986480 TCG
64 TCG
23986483 AACGGGTGGT
Statistics
Matches: 296, Mismatches: 69, Indels: 39
0.73 0.17 0.10
Matches are distributed among these distances:
155 7 0.02
156 1 0.00
157 6 0.02
158 160 0.54
159 116 0.39
160 2 0.01
161 1 0.00
162 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (156 bp):
CAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGCCGGAGAGGCAGAATGCACAAGCCAGGGATC
GCTCGATCCCCCCTACGTGCTGTCGATCCTACCGTCGCAACCCTCAGTCTAGTCTGATCTTAGAC
TGGGAATGAACTCTGTATGCCTAAGT
Found at i:23986482 original size:317 final size:317
Alignment explanation
Indices: 23985907--23986483 Score: 779
Period size: 317 Copynumber: 1.8 Consensus size: 317
23985897 AACTCCATAT
* * *
23985907 GCTTAGATATGGAATGAACTTCATATGCTAAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCTAAAGCCAACCCACGAAACGAACGTGCAGGCGCTCAA
* * * *
23985972 TCGGCCGGAGAGGTAGAATGCACAAGCCAAGGACCGGCCCGATCCCCCCTACGTGCTGTCGATCT
66 TCGGCCGGAGAGGCAGAATACACAAGCCAAGGACCAGCCCGATCCCCCCTACGTGCTGTCGATCC
* * * *
23986037 TGCTGCTGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
131 TACCGCTGCAACCCTCAGTCTAGTCTGATCTTAGACTGGGAATAAACTCTGTATGCCTAAGTCAA
* * * * *
23986102 CCCATGAAACGAGCGTGCAGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCCGGGGATCGA
196 CCCATGAAACGAGCGTGCAGACACTCAACCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCGA
23986167 TTCGGTCCTCTTCTACGTGCTACCGATCCCGCTACCGTAACCCTCAGTTCGGCTGGG
261 TTCGGTCCTCTTCTACGTGCTACCGATCCCGCTACCGTAACCCTCAGTTCGGCTGGG
* * *
23986224 GCTTAGACATGGAATGAACTCCCTATGTCT-AAGCCAACCCACGAAACGAGCGTGCAGGTGCTCA
1 GCTTAGACATGGAATGAACTCCATATG-CTAAAGCCAACCCACGAAACGAACGTGCAGGCGCTCA
* * *** * *
23986288 GTC-GCCTGGAGAGGCAGAATACGCAAGCTTGGGATCAGCTCGATCCCCCCTACGTGCTGTCGAT
65 ATCGGCC-GGAGAGGCAGAATACACAAGCCAAGGACCAGCCCGATCCCCCCTACGTGCTGTCGAT
23986352 CCTACCG-TCGCAACCCTC-GATCTAGTCTGATCTTAGACTGGGAATAAACTCTGTATGCCTAAG
129 CCTACCGCT-GCAACCCTCAG-TCTAGTCTGATCTTAGACTGGGAATAAACTCTGTATGCCTAAG
* * * * *
23986415 TCAACCCATGAAACGAGTGTG-TGAACGCTCAACCGACC-AGAGAGGCAGGATGCGCAAGCCAGG
192 TCAACCCATGAAACGAGCGTGCAG-ACACTCAACCGACCGA-AGAGGCAGAATGCACAAGCCAGG
23986478 GATCGA
255 GATCGA
23986484 ACGGGTGGTA
Statistics
Matches: 223, Mismatches: 31, Indels: 12
0.84 0.12 0.05
Matches are distributed among these distances:
316 7 0.03
317 214 0.96
318 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCATATGCTAAAGCCAACCCACGAAACGAACGTGCAGGCGCTCAA
TCGGCCGGAGAGGCAGAATACACAAGCCAAGGACCAGCCCGATCCCCCCTACGTGCTGTCGATCC
TACCGCTGCAACCCTCAGTCTAGTCTGATCTTAGACTGGGAATAAACTCTGTATGCCTAAGTCAA
CCCATGAAACGAGCGTGCAGACACTCAACCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCGA
TTCGGTCCTCTTCTACGTGCTACCGATCCCGCTACCGTAACCCTCAGTTCGGCTGGG
Found at i:23987793 original size:26 final size:26
Alignment explanation
Indices: 23987755--23987807 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23987745 CTGCTTCGAT
* *
23987755 CTTAGACTGGGAATGGACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23987781 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23987807 C
1 C
23987808 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23988209 original size:171 final size:176
Alignment explanation
Indices: 23987939--23988432 Score: 488
Period size: 183 Copynumber: 2.8 Consensus size: 176
23987929 CCAATCCGAT
* * **
23987939 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGTGGATGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGG-TGCTCTG
* * * * *
23988003 CCGGTCGGAGAGGCACAATGCGCAAGCCGGGGATCAGCCCAATCCCCCTCTGCATGCTGTCGAT-
64 -CAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCAATCCCCCTCTGCATGCTGCCGATC
* *
23988067 CC-C-GCT-GTC-G-A-TCCTGCTGCCACAACCCTCGATCCGGCT-GGGG
128 CCACTGCTGGTCTGCAGTCCTACTGCCACAACCCTCGACCCGG-TAGGGG
* *
23988110 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGTAGGTGCTCTGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGT-GGTGCTCTGC
* * * *
23988175 TAGCCGGAGAGGCAGAATGCGTAAGTCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCC
65 -AGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCAATCCCCCTCTGCATGCTGCCGATCC
* *
23988240 CACTGCTGGTCTTGCTACTGGTCCTACTGCCACAACCTTCGGCCCGGTAGGGG
129 CACTGCTGGTC-TGC-A---GTCCTACTGCCACAACCCTCGACCCGGTAGGGG
* * * *
23988293 CTTAGAGATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCTGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTG-TGGTGCTCTGC
* * * * *** * *
23988358 CGACCGGAGAGGCAGAATGCACAATCCGGGGATC-GACCTGGTCCCTC-CTGCATGCTACCGATC
65 AG-CCGGAGAGGCAGAATGCGCAAGCCAGGGATCAG-CCCAATCCCCCTCTGCATGCTGCCGATC
*
23988421 CTACTGCTGGTC
128 CCACTGCTGGTC
23988433 CTACTGTGGC
Statistics
Matches: 267, Mismatches: 37, Indels: 27
0.81 0.11 0.08
Matches are distributed among these distances:
170 1 0.00
171 106 0.40
172 5 0.02
173 1 0.00
174 3 0.01
175 3 0.01
177 1 0.00
179 1 0.00
182 28 0.10
183 118 0.44
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (176 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGTGCTCTGCA
GCCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCAATCCCCCTCTGCATGCTGCCGATCCCA
CTGCTGGTCTGCAGTCCTACTGCCACAACCCTCGACCCGGTAGGGG
Found at i:23988492 original size:26 final size:26
Alignment explanation
Indices: 23988463--23988515 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23988453 CCGGTTCGAT
23988463 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
23988489 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23988515 C
1 C
23988516 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23989001 original size:26 final size:26
Alignment explanation
Indices: 23988965--23989017 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23988955 CCGATCCGAT
23988965 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
23988991 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
23989017 C
1 C
23989018 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:23989256 original size:501 final size:501
Alignment explanation
Indices: 23988431--23989491 Score: 1188
Period size: 501 Copynumber: 2.1 Consensus size: 501
23988421 CTACTGCTGG
** * *
23988431 TCCTACTGTGGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * **
23988496 ATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGGTCGA
66 ATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATACAGGCACTCAACCGACCGA
* * * ** * *
23988561 AAAGGTAGAATGCCCGAGCCGGGGATCAGCCCGATCCCCTCCTACGTGGTGTCGATCCTGCTGCC
131 AAAGGCAGAATGCACAAGCCAAGGATCAGCCCGATCCCCTCCTACGTGGTGTCGATCCTACTACC
** * * *
23988626 GTAACCCTTGGTCCGGTCCGATCTTAGATAGGGAATGAACTTCGTATGCCTAAGTCAACCCATGA
196 ACAACCCTTGGTCCGGTCCGATCTTACATAGGGAATGAACTTCGTAAGCCTAAGTCAACCCACGA
* * * * * * * * *
23988691 GACGAGCGTACGGGCGTTGAGCCGATCAGAGAGGCATAATGCGTAAGCCGGGGATCGGCCCGGTC
261 AACAAGCGTACGAGCGCTGAGCCGACCAGAAAGGCATAATGCGCAAGCCAGGGATCGACCCGGTC
* * * * * * *
23988756 CCCTTCTGCGTGCTACCGGCCCCACTGCTACAACCTTCGATCCGACTGGGGCTTAGACATGGAAT
326 CCCCTCTACATGCTACCGGCCCCACTGCCACAACCCTCGATCCGACTGGAGCTTACACATGGAAT
* * ** * * *
23988821 GAACTCCCTATGCCTAAGCCATCCCACGAAACGGCCGTGTGGGTGCTCAGCTGGCCGAAGTGGTA
391 GAACTCCCTATGCCTAAGCCAACACACGAAACGGCCGTGTGGGCACTCAGCCGACCGAAGAGGTA
* *
23988886 GAATGTGCAAGTCGAGGATCGGCTCGGTCCCTCCTGCGTGCTGTC-GA
456 GAATGCGCAAGCCGAGGATCGGCTCGGTCCC-CCTGCGTGCTG-CAGA
* * *
23988933 TCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
1 TCCTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* ** * * * *
23988998 -TGGGGATGAACTCTGTATGCCTAAGTTAACCCATGAAATGAGCATGCGGGCACTCAACCGACCG
66 AT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATACAGGCACTCAACCGACCG
* * * * * *
23989062 GAGAGGCAGAATGCACAAGCTAAGGATCAGCCCGGT-CCCTCCTGCGTGTTGTCGATCCTACTAC
130 AAAAGGCAGAATGCACAAGCCAAGGATCAGCCCGATCCCCTCCTACGTGGTGTCGATCCTACTAC
*
23989126 CACAACCCTTGGTCCGGTCTGATCTTACACT-GGGAATGAAC-TCTGTAAGCCTAAGTCATA-CC
195 CACAACCCTTGGTCCGGTCCGATCTTACA-TAGGGAATGAACTTC-GTAAGCCTAAGTCA-ACCC
* * * *
23989188 ACGAAACAATCGTGCGAGCGCTGAGCTGGCC-GAAAAGGCATAATAG-GCAAGCCAGGGATCGAC
257 ACGAAACAAGCGTACGAGCGCTGAGCCGACCAG-AAAGGCATAAT-GCGCAAGCCAGGGATCGAC
** * * * *
23989251 CCGGTCCCCCTCTACATGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGAGCTTACACA
320 CCGGTCCCCCTCTACATGCTACCGGCCCCACTGCCACAACCCTCGATCCGACTGGAGCTTACACA
* * ** * *
23989316 TGGAATGAACTCCCTATGCCTAAGCCAACACATGAAATGGGTGTGTGGGCACTCATCCGACCGGA
385 TGGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGGCCGTGTGGGCACTCAGCCGACCGAA
* *
23989381 GAGGTAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCTGCGTGCTGCAGA
450 GAGGTAGAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCTGCGTGCTGCAGA
* * ** *
23989433 TCCTATTGCCACAACCCTCGGTCCGACTGGGA-CTTAGACAT-GGAATGAACTCCCTATGC
1 TCCTACTGCCGCAACCCTCGGTCCGA-TCCGATCTTAGAC-TGGGAATGAACTCCGTATGC
23989492 CTAAGCCAAC
Statistics
Matches: 461, Mismatches: 89, Indels: 20
0.81 0.16 0.04
Matches are distributed among these distances:
499 1 0.00
500 61 0.13
501 261 0.57
502 138 0.30
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (501 bp):
TCCTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
ATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATACAGGCACTCAACCGACCGA
AAAGGCAGAATGCACAAGCCAAGGATCAGCCCGATCCCCTCCTACGTGGTGTCGATCCTACTACC
ACAACCCTTGGTCCGGTCCGATCTTACATAGGGAATGAACTTCGTAAGCCTAAGTCAACCCACGA
AACAAGCGTACGAGCGCTGAGCCGACCAGAAAGGCATAATGCGCAAGCCAGGGATCGACCCGGTC
CCCCTCTACATGCTACCGGCCCCACTGCCACAACCCTCGATCCGACTGGAGCTTACACATGGAAT
GAACTCCCTATGCCTAAGCCAACACACGAAACGGCCGTGTGGGCACTCAGCCGACCGAAGAGGTA
GAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCTGCGTGCTGCAGA
Found at i:23989565 original size:157 final size:158
Alignment explanation
Indices: 23989282--23989587 Score: 391
Period size: 157 Copynumber: 1.9 Consensus size: 158
23989272 TCGGTCCCGC
*
23989282 TGCCACAACCCTCGGTCCGGCTGGAGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACAC
1 TGCCACAACCCTCGGTCCGACTGGAGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACAC
* ** * * * * * * * * *
23989347 ATGAAATGGGTGTGTGGGCACTCATCCGACCGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCTC
66 ACGAAATGGACGTGCGGGCACTCAGCCGACCAGAGAGGCAAAATGCGCAAGCCGAGAATCGGCCC
*
23989412 GGT-CCCCCTGCGTGCTGCAGATCCTAT
131 AGTCCCCCCTGCGTGCTGCAGATCCTAT
* *
23989439 TGCCACAACCCTCGGTCCGACTGG-GACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 TGCCACAACCCTCGGTCCGACTGGAG-CTTACACATGGAATGAACTCCCTATGCCTAAGCCAACA
** * ** *
23989503 CACGAAATGGACGTGCGGGTGCTCAGCTGGTCAGAGAGGCAAAATGCGCAAGTCGAGAATCGGCC
65 CACGAAATGGACGTGCGGGCACTCAGCCGACCAGAGAGGCAAAATGCGCAAGCCGAGAATCGGCC
23989568 CAGTCCCCCCTGCGTGCTGC
130 CAGTCCCCCCTGCGTGCTGC
23989588 CAATCCTGCT
Statistics
Matches: 125, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
156 1 0.01
157 109 0.87
158 15 0.12
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
TGCCACAACCCTCGGTCCGACTGGAGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACAC
ACGAAATGGACGTGCGGGCACTCAGCCGACCAGAGAGGCAAAATGCGCAAGCCGAGAATCGGCCC
AGTCCCCCCTGCGTGCTGCAGATCCTAT
Found at i:23989674 original size:26 final size:26
Alignment explanation
Indices: 23989623--23989675 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23989613 CCGATCCAAT
*
23989623 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
23989649 CTTAGATTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
23989675 C
1 C
23989676 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23997057 original size:11 final size:11
Alignment explanation
Indices: 23997025--23997060 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
23997015 TGGTTAGGCT
23997025 CTCCGACGATG
1 CTCCGACGATG
**
23997036 CTCCGGTGATG
1 CTCCGACGATG
23997047 CTCCGACGATG
1 CTCCGACGATG
23997058 CTC
1 CTC
23997061 TGATGATGGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.14, C:0.36, G:0.28, T:0.22
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:23997067 original size:22 final size:22
Alignment explanation
Indices: 23997025--23997068 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
23997015 TGGTTAGGCT
*
23997025 CTCCGACGATGCTCCGGTGATG
1 CTCCGACGATGCTCCGATGATG
*
23997047 CTCCGACGATGCTCTGATGATG
1 CTCCGACGATGCTCCGATGATG
23997069 GTGCCTCGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.16, C:0.30, G:0.30, T:0.25
Consensus pattern (22 bp):
CTCCGACGATGCTCCGATGATG
Found at i:23997068 original size:11 final size:11
Alignment explanation
Indices: 23997025--23997068 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
23997015 TGGTTAGGCT
*
23997025 CTCCGACGATG
1 CTCCGATGATG
*
23997036 CTCCGGTGATG
1 CTCCGATGATG
*
23997047 CTCCGACGATG
1 CTCCGATGATG
*
23997058 CTCTGATGATG
1 CTCCGATGATG
23997069 GTGCCTCGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.16, C:0.30, G:0.30, T:0.25
Consensus pattern (11 bp):
CTCCGATGATG
Found at i:23997179 original size:26 final size:26
Alignment explanation
Indices: 23997140--23997190 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
23997130 CTCAAAATCT
*
23997140 TAGATTGGGAATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
*
23997166 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
23997191 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:23998414 original size:26 final size:26
Alignment explanation
Indices: 23998376--23998428 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23998366 GGCTCAAACT
23998376 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23998402 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
23998428 C
1 C
23998429 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23999158 original size:26 final size:26
Alignment explanation
Indices: 23999129--23999181 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23999119 CTAGTCTGAT
23999129 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCTATATG
* * *
23999155 CTTAGACTGGGGATGGACTCTATATG
1 CTTAGACTAGGAATGAACTCTATATG
23999181 C
1 C
23999182 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTATATG
Found at i:24000954 original size:159 final size:158
Alignment explanation
Indices: 24000561--24001058 Score: 372
Period size: 159 Copynumber: 3.2 Consensus size: 158
24000551 GGCTCAAAAT
* * *
24000561 CTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCCATAAA-ACGAGCGTACGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATAAATA-GAGCGTGCGGGCGCTCAG
* * * * ** * *
24000625 CAGGCCA-GAGAGGCAGAATCCGTAAGCCGAGGATCGACCCGGTCCCTCTCGCGTGCTATCGATC
65 CCGG-CAGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCAATCCCTCTCGCATGCTAGCGATC
* * ** *
24000689 CTGGTGCTGCAACCCTCAGTCCGGTCCGAT
129 CCGCTGCAACAACCCTCAGTCCGGTCCGAG
** * * * * *
24000719 CTTAGACTGGGAATGAACTCTGTATGTATAAGTCAACCCACAAA-ATGAGCGTGTGGGTGCTGAG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATAAATA-GAGCGTGCGGGCGCTCAG
* * *
24000783 CCGATC-GAAGAGGCATAATGCGCAAGCCGAGGATC-AGCCCAATCCCTCTCTGCATGCT-GCAG
65 CCG-GCAGGAGAGGCAAAATGCGCAAGCCGAGGATCGA-CCCAATCCCTCTC-GCATGCTAGC-G
* * * *
24000845 GTCCCGCTGCAACAACCCTCGGTCCGG-CTGGGG
126 ATCCCGCTGCAACAACCCTCAGTCCGGTC-CGAG
*
24000878 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATAG-GCGTGCGGGCACTCA
1 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCAT-AAATAGAGCGTGCGGGCGCTCA
** ** * * * *
24000941 GCCGGCAGGAGAGGCAAAATGCATAAATCGGGGATCGGCCCAGTCCC-CT-GCGTGCT-GTCGAT
64 GCCGGCAGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCAATCCCTCTCGCATGCTAG-CGAT
* * ** * * * *
24001003 CCTGTTGCCGCAACCCTCAATCCAGTCTGAC
128 CCCGCTGCAACAACCCTCAGTCCGGTCCGAG
* *
24001034 CTTAAATTGGGAATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCTGTAT
24001059 CCTTAGGCTG
Statistics
Matches: 265, Mismatches: 61, Indels: 30
0.74 0.17 0.08
Matches are distributed among these distances:
155 1 0.00
156 49 0.18
157 3 0.01
158 97 0.37
159 109 0.41
160 5 0.02
161 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATAAATAGAGCGTGCGGGCGCTCAGC
CGGCAGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCAATCCCTCTCGCATGCTAGCGATCCC
GCTGCAACAACCCTCAGTCCGGTCCGAG
Found at i:24002494 original size:159 final size:158
Alignment explanation
Indices: 24002146--24002592 Score: 427
Period size: 159 Copynumber: 2.8 Consensus size: 158
24002136 AACTCCGTAT
* * *** *
24002146 GCTTAGACATCGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGCACGGGCGCTCAA
* * * * *
24002211 CTGGCCGGAGAGGCAGAATGCGTAAGTCAGGGATCGACCTGATCCCCCCTACATGCTGTCGATCT
66 CTGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGATCCCCCCTACATGCTGCCGATCC
* ** *
24002276 TGCTGCCTTAACCCTCGGTCTGGTCTGA
131 CGCTGCCACAACCCTCAGTCTGGTCTGA
* * * * * *
24002304 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGCACGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGCACGGGCGCTCA
* * * * * * *
24002368 GCCT-GCCAGAGAGGCATAATGCGCAAGCCGGGGATCGATCTGATCCCCCTCTACCTGTTGCCGG
65 -ACTGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGATCCCCC-CTACATGCTGCCGA
*
24002432 TCCCGCTGCCACAACCCTCAGTCTGG-CTAGG
128 TCCCGCTGCCACAACCCTCAGTCTGGTCT-GA
* * **
24002463 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTC-A
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGCACGGGCGCTCAA
* * * * * * * * *
24002527 GTCGGTCAGAGAGGAAGAATGCACAAGCC-GAGGATCGGCCCGATCCCTCCTGCGTGCTGCCGAT
66 CT-GGCCAGAGAGGCAGAATGCGCAAGCCAG-GGATCGACCTGATCCCCCCTACATGCTGCCGAT
24002591 CC
129 CC
24002593 TGCTACCGTA
Statistics
Matches: 228, Mismatches: 53, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 105 0.46
159 120 0.53
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGCACGGGCGCTCAA
CTGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGATCCCCCCTACATGCTGCCGATCC
CGCTGCCACAACCCTCAGTCTGGTCTGA
Found at i:24002659 original size:26 final size:26
Alignment explanation
Indices: 24002623--24002674 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
24002613 CGGTCCGATG
*
24002623 TTAGACTGGGAATGCACCTCGTATGC
1 TTAGACTGGGAATGAACCTCGTATGC
*
24002649 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACCTCGTATGC
24002675 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACCTCGTATGC
Found at i:24003129 original size:342 final size:343
Alignment explanation
Indices: 24002305--24003281 Score: 1208
Period size: 342 Copynumber: 2.9 Consensus size: 343
24002295 CTGGTCTGAT
* * ** *
24002305 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGCACGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGTTGAGC
* * * * *
24002370 CTGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGATCTGATCCCCCTCTACCTGTTGCCGGTCC
66 CGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGATCCGATCCCCCTCTGCATGTTGTCGGTCC
* * * *
24002435 CGCTGCCACAACCCTCAGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * *
24002500 CCCATGAAACGGGCGTGCGGGCGCTCAGTCGGTCAGAGAGGAAGAATGCACAAGCCGAGGATCGG
196 CCCATGAAACAGGCGTGCGGGCGCTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCGG
* * * * * ** **
24002565 CCCGATCCCTCCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCAATCCGGTCCGATGTTAGACT
261 CCCGGTCCCCCCTGCGTGCTGTCAATCCTGCTACCGCAACCCTCAATCCAATCCGATCCTAGACT
*
24002630 GGGAATGCACCTCGTATG
326 GGGAATGAACCTCGTATG
*
24002648 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGGGTGTTGAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGTTGAGC
* * ** * ** * *
24002713 CGGCCGGAGAGGCATAACGCATAAACCGGGGATCGATCCGATCCCTTTCTGCATGCTGTCGATCC
66 CGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGATCCGATCCCCCTCTGCATGTTGTCGGTCC
* * * * ** *
24002778 CATTGCCACAACCCTTGGTCCAGCTGGGGCTTAGACGTGGAACAAACTCACTATGCCTAAGCCAA
131 CACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * *
24002843 CCCATGAAACAGGCGTGCGGGCGTTCAGCCGGCCAGAGAGGCAGAATGCGTAAGCCGAGGATC-G
196 CCCATGAAACAGGCGTGCGGGCGCTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCGG
* * * *
24002907 CCCGGTCCCCCCTGCGTGTTGTCAATCCTGCTATCGCAACCCTCGATCCAATCCGATCCTAGATT
261 CCCGGTCCCCCCTGCGTGCTGTCAATCCTGCTACCGCAACCCTCAATCCAATCCGATCCTAGACT
24002972 GGGAATGAA-CTCCGTATG
326 GGGAATGAACCT-CGTATG
* * * * * * *
24002990 CTTAGACTGGGGATGAACTTTGTATGCCTAAGTCAACCCACAAAATGAGTGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGTTGAGC
* * * * * *
24003055 CGGCCAGAGAGGTATAATGCGCAAGCCGGGGATC-AGCCCGGTCCCCCGCTGCTTTTTGTCGGTC
66 CGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGA-TCCGATCCCCCTCTGCATGTTGTCGGTC
* * *
24003119 CTACTGCCACAACCCTCGGTCCGGCTGGGGCTTATACATGTAATGAACTCCCTATGCCTAAGCCA
130 CCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * *
24003184 ACCCATGAAACAAGCGTGCGGGTGCTCAGCCCGTC-GAAGAGGCAAAATGCGCAAGCCAAGGATC
195 ACCCATGAAACAGGCGTGCGGGCGCTCAGCCGGTCAG-AGAGGCAGAATGCGCAAGCCGAGGATC
* *
24003248 GGCCTGGTCCCCCCTGCATGCTGT-AGATCCTGCT
259 GGCCCGGTCCCCCCTGCGTGCTGTCA-ATCCTGCT
24003282 GCTTGTCCTA
Statistics
Matches: 533, Mismatches: 96, Indels: 10
0.83 0.15 0.02
Matches are distributed among these distances:
341 4 0.01
342 281 0.53
343 248 0.47
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (343 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGTTGAGC
CGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGATCCGATCCCCCTCTGCATGTTGTCGGTCC
CACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCATGAAACAGGCGTGCGGGCGCTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCGG
CCCGGTCCCCCCTGCGTGCTGTCAATCCTGCTACCGCAACCCTCAATCCAATCCGATCCTAGACT
GGGAATGAACCTCGTATG
Found at i:24003489 original size:355 final size:355
Alignment explanation
Indices: 24002961--24003603 Score: 781
Period size: 355 Copynumber: 1.8 Consensus size: 355
24002951 GATCCAATCC
* * *
24002961 GATCCTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTTGTATGCCTAAGTCAA
1 GATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAA
* * * ** * *
24003026 CCCACAAAATGAGTGTGCGGGTGCTCAGTCGGCCAGAGAGGTATAATGCGCAAGCCGGGGATCAG
66 CCCACAAAACGAGCGTGCGGGGGCTCAACCGGCCAGAAAGGTAGAATGCGCAAGCCGGGGATCAG
* * ** * * * * *
24003091 CCCGGTCCCCCGCTGCTTTTTGTCGGTCCTACTGCCACAACCCTCGGTCCGG-CTGGGGCTTATA
131 CCCGATCCCCCGCTGCGTGCTATCGATCCTACTACCACAACCCTCGGTCCGGTCT-GAGCTTAGA
* * * * * * *
24003155 CAT-GTAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAGCCCGTC
195 C-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAGCCAGCC
*
24003219 GAAGAGGCAAAATGCGCAAGCCAAGGATCGGCCTGGTCCCCCCTGCATGCTGTAGATCCTGCTGC
259 GAAAAGGCAAAATGCGCAAGCCAAGGATCGGCCTGGTCCCCCCTGCATGCTGTAGATCCTGCTGC
24003284 TTGTCCTACTACCGTAACCCTTAGTCCAGACT
324 TTGTCCTACTACCGTAACCCTTAGTCCAGACT
*
24003316 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTTTGTATGCCTAAGCCA
1 GATCCTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTTTGTATGCCTAAGCCA
* * * ** ** **
24003380 ATCGACGAAACGAGCGTGCGGGGGCTCAACCGGCTGGAAAGGTAGAATGCGCAAGTTGGGGATTG
65 ACCCACAAAACGAGCGTGCGGGGGCTCAACCGGCCAGAAAGGTAGAATGCGCAAGCCGGGGATCA
* * * * * *
24003445 GCCCGATCCCCC-CTTGGGTGCTATCGATCTTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAG
130 GCCCGATCCCCCGC-TGCGTGCTATCGATCCTACTACCACAACCCTCGGTCCGGTCTGAGCTTAG
* * * *
24003509 ACTGGGAATGAACTCCATATGCGTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGCCAGCC
194 ACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAGCCAGCC
* *
24003574 GAAAAGGCATAATGCGCAAGCCAGGGATCG
259 GAAAAGGCAAAATGCGCAAGCCAAGGATCG
24003604 ACTCAGTCCC
Statistics
Matches: 235, Mismatches: 49, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
354 2 0.01
355 230 0.98
356 3 0.01
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (355 bp):
GATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAA
CCCACAAAACGAGCGTGCGGGGGCTCAACCGGCCAGAAAGGTAGAATGCGCAAGCCGGGGATCAG
CCCGATCCCCCGCTGCGTGCTATCGATCCTACTACCACAACCCTCGGTCCGGTCTGAGCTTAGAC
TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAGCCAGCCGA
AAAGGCAAAATGCGCAAGCCAAGGATCGGCCTGGTCCCCCCTGCATGCTGTAGATCCTGCTGCTT
GTCCTACTACCGTAACCCTTAGTCCAGACT
Found at i:24003992 original size:302 final size:302
Alignment explanation
Indices: 24003439--24004016 Score: 777
Period size: 302 Copynumber: 1.9 Consensus size: 302
24003429 CGCAAGTTGG
* ** * *
24003439 GGATTGGCCCGATCCCCCCTTGGGTGCTATCGATCTTGCTACCGCAACCCTCGGTCTGGTCTGAT
1 GGATTGACCCGATCCCCCCTTACGTGCTATCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGAT
* *
24003504 CTTAGACTGGGAATGAACTCCATATGCGTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGC
66 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTGAGC
* * * *** * * *
24003569 CAGCCGAAAAGGCATAATGCGCAAGCCAGGGATCGACTCAGTCCCCCTCTGTGTGCTGCCTGTCC
131 CAGCAGAAAAGGCATAATGCGCAAGCCAGAGATCGACCCAGTCCCCCTCTACCTACTACCGGTCC
* *
24003634 CGCTACCACAACCCTCAATCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
196 CGCTACCACAACCCTCAATCCAGCTAGGGCTTACACAAGGAATGAACTCCCTATGCCTAAGCCAA
24003699 CCCATGAAACGGACGTCCGGAGAGGCAGAATAAGTAAGCCGA
261 CCCATGAAACGGACGTCCGGAGAGGCAGAATAAGTAAGCCGA
* *
24003741 GGATTGACCCGATCCCCGCC-TACGTGCTGTCGATCCTGCTACTGCAACCCTCGGTCCGGTCTGA
1 GGATTGACCCGATCCCC-CCTTACGTGCTATCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGA
* * ** * * *
24003805 TCTTAGATTGGGAATGGACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTACTA-GCGTTGA
65 TCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTAC-AGGCGCTGA
* * * *
24003869 GCCTGTCAG-AGAGGCATAATGCGCAAGCC-GAAGATCGGCCCGGTCCCCCTCTACCTACTACCG
129 GCCAG-CAGAAAAGGCATAATGCGCAAGCCAG-AGATCGACCCAGTCCCCCTCTACCTACTACCG
* ** *
24003932 GTCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTACACAAGGAATGAACTCCCTATGCCTAAG
192 GTCCCGCTACCACAACCCTCAATCCAGCTAGGGCTTACACAAGGAATGAACTCCCTATGCCTAAG
24003997 CCAACCCATGAAACGGACGT
257 CCAACCCATGAAACGGACGT
24004017 GCGGGCGCTC
Statistics
Matches: 237, Mismatches: 35, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
301 1 0.00
302 231 0.97
303 5 0.02
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (302 bp):
GGATTGACCCGATCCCCCCTTACGTGCTATCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGAT
CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTGAGC
CAGCAGAAAAGGCATAATGCGCAAGCCAGAGATCGACCCAGTCCCCCTCTACCTACTACCGGTCC
CGCTACCACAACCCTCAATCCAGCTAGGGCTTACACAAGGAATGAACTCCCTATGCCTAAGCCAA
CCCATGAAACGGACGTCCGGAGAGGCAGAATAAGTAAGCCGA
Found at i:24004151 original size:26 final size:26
Alignment explanation
Indices: 24004122--24004174 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24004112 CCGGTTTGAT
* *
24004122 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACGGGGAACGAACTCCGTATG
* *
24004148 CTTAGACGGGGGACGAACTCTGTATG
1 CTTAGACGGGGAACGAACTCCGTATG
24004174 C
1 C
24004175 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACGGGGAACGAACTCCGTATG
Found at i:24004475 original size:171 final size:170
Alignment explanation
Indices: 24004162--24004475 Score: 416
Period size: 171 Copynumber: 1.8 Consensus size: 170
24004152 GACGGGGGAC
* * * *
24004162 GAACTCTGTATGCCTAAGTCAACCCACGAAATGAGTGTGCAGGCGCTCAGCCGGCCGAAGAGGCA
1 GAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGGCCGAAGAGGCA
* * *
24004227 TAATGTGCAAGCCGAGGATCAACCTGGTCCCACTCTACGTTCTGTCGATCCCGCTGCCGGTCCTA
66 GAATGTGCAAGCCGAGGATCAACCTGGTCCCACTCTA-GTTATGTCGATCCCACTGCCGGTCCTA
*
24004292 CTGCCACAACCCTTAGTCCGACTGGCACTTAGACATGGAAT
130 CTACCACAACCCTTAGTCCGACTGGCACTTAGACATGGAAT
**
24004333 GAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAGCCGGCCGAAGAGGCA
1 GAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGGCCGAAGAGGCA
* * * * **
24004398 GAATGTGCAAGCCGGGGATCGATCC-GGTCCCTCTCT-GTATGATGTCGATCCTACTGTTGGTCC
66 GAATGTGCAAGCCGAGGATC-AACCTGGTCCCACTCTAGT-T-ATGTCGATCCCACTGCCGGTCC
* *
24004461 TGCTACCGCAACCCT
128 TACTACCACAACCCT
24004476 CGGTCTAGTC
Statistics
Matches: 122, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
169 2 0.02
170 1 0.01
171 116 0.95
172 3 0.02
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (170 bp):
GAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGGCCGAAGAGGCA
GAATGTGCAAGCCGAGGATCAACCTGGTCCCACTCTAGTTATGTCGATCCCACTGCCGGTCCTAC
TACCACAACCCTTAGTCCGACTGGCACTTAGACATGGAAT
Found at i:24004496 original size:171 final size:170
Alignment explanation
Indices: 24004148--24004516 Score: 397
Period size: 171 Copynumber: 2.2 Consensus size: 170
24004138 ACTCCGTATG
* * * * * * *
24004148 CTTAGACGGGGGACGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGTGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
* *
24004213 CGGCCGAAGAGGCATAATGTGCAAGCCGAGGATCAACCTGGTCCCACTCTACGTTCTGTCGATCC
66 CGGCCGAAGAGGCAGAATGTGCAAGCCGAGGATCAACCTGGTCCCACTCTA-GTTATGTCGATCC
* * * *
24004278 CGCTGCCGGTCCTACTGCCACAACCCTTAGTCCGACTGGCA
130 CACTGCCGGTCCTACTACCACAACCCTCAGTCCGACTGCCA
**
24004319 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
* * *
24004383 CCGGCCGAAGAGGCAGAATGTGCAAGCCGGGGATCGATCC-GGTCCCTCTCT-GTATGATGTCGA
65 CCGGCCGAAGAGGCAGAATGTGCAAGCCGAGGATC-AACCTGGTCCCACTCTAGT-T-ATGTCGA
* ** * * * * *
24004446 TCCTACTGTTGGTCCTGCTACCGCAACCCTCGGT-CTAGT-CCAA
127 TCCCACTGCCGGTCCTACTACCACAACCCTCAGTCCGACTGCC-A
*
24004489 TCTTAGACTGGGAATGAACTCCGTATGC
1 -CTTAGACTGGGAATGAACTCTGTATGC
24004517 TTACACATGG
Statistics
Matches: 164, Mismatches: 27, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
169 3 0.02
170 6 0.04
171 152 0.93
172 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (170 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
CGGCCGAAGAGGCAGAATGTGCAAGCCGAGGATCAACCTGGTCCCACTCTAGTTATGTCGATCCC
ACTGCCGGTCCTACTACCACAACCCTCAGTCCGACTGCCA
Found at i:24005021 original size:158 final size:156
Alignment explanation
Indices: 24004525--24005021 Score: 422
Period size: 159 Copynumber: 3.1 Consensus size: 156
24004515 GCTTACACAT
* *
24004525 GGAATGAAATCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGTGCGGGCGCTCAACCGGAC
1 GGAATGAAATCCGTATGCCTAAGCCAACCCATGAAACG-G-GT--GTGCGGGCGCTCAACCGGCC
* * * * * * * * *
24004590 GGAAAGGTAGAATGCGTAAGACGGGGATCAGCCCGGTTCCCC-CTACGTGCTGTCGATCTTGCAG
62 GGAAAGGTAGAATACGCAAGCCGAGGATCGGCTC-GATCCCCTCTGCGTGCTGTCGATC-TGCTG
*
24004654 TCGCAACCCTCAGTTCGGTCTGATCTTAGATTG
125 TCGCAACCCTCAATTCGG-CTGATCTTAGATTG
* * ** * * * * * * * * **
24004687 GGAATGAACTCCGTATGCTTAATTCAACCAATGAAACGAGCGTGCAGGTGCTGAGCCGACCAAAA
1 GGAATGAAATCCGTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAACCGGCCGGAA
* * * * * ** *
24004752 AGGCATAATACGCAAGCCGAGGATCGGCTCGGTCCCCCTCTGTGTGCTATCGATCTCGCTACCAC
66 AGGTAGAATACGCAAGCCGAGGATCGGCTCGAT-CCCCTCTGCGTGCTGTCGATCT-GCTGTCGC
* * * * * *
24004817 AGCCCTCGATCCGGTTGGTGCTTAGACAT-
129 AACCCTCAATTCGGCTGAT-CTTAGA-TTG
* ** * * *
24004846 GGAATGAAATCCCTATGCCTAAGCCAACCCACAAAATGGGTGTACGGGCGCTCAACCGGCCGGAG
1 GGAATGAAATCCGTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAACCGGCCGGAA
* *
24004911 AGGTAGAATCCGCAAGCCGAGGATCGGCTCGATCCCCTCTGCATGCTGTCGATTCTGCTGTCGCA
66 AGGTAGAATACGCAAGCCGAGGATCGGCTCGATCCCCTCTGCGTGCTGTCGA-TCTGCTGTCGCA
24004976 ACCCTCAATTCGGCCTGATCTTAGATTG
130 ACCCTCAATTCGG-CTGATCTTAGATTG
*
24005004 GGAATGAACTCCGTATGC
1 GGAATGAAATCCGTATGC
24005022 TTAGACTGGG
Statistics
Matches: 250, Mismatches: 77, Indels: 20
0.72 0.22 0.06
Matches are distributed among these distances:
157 3 0.01
158 100 0.40
159 113 0.45
160 1 0.00
162 33 0.13
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (156 bp):
GGAATGAAATCCGTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAACCGGCCGGAA
AGGTAGAATACGCAAGCCGAGGATCGGCTCGATCCCCTCTGCGTGCTGTCGATCTGCTGTCGCAA
CCCTCAATTCGGCTGATCTTAGATTG
Found at i:24005031 original size:26 final size:26
Alignment explanation
Indices: 24004995--24005047 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24004985 TCGGCCTGAT
*
24004995 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24005021 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24005047 C
1 C
24005048 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24005766 original size:26 final size:26
Alignment explanation
Indices: 24005728--24005780 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24005718 GGCTCAAAAT
*
24005728 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24005754 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
24005780 C
1 C
24005781 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24006056 original size:159 final size:159
Alignment explanation
Indices: 24005754--24006255 Score: 397
Period size: 159 Copynumber: 3.2 Consensus size: 159
24005744 ACTCTGTATG
* * * * *
24005754 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACGCACAAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGC
* * * *
24005819 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCTCCCCTATGTGCTGTCAATCC
66 CGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCCATCCTCCCCTATGTGCTATCAATCC
* * *
24005884 TGCTGTCGCAACCCTCGGTCCGGTCCGAT
131 CGCTGCCACAACCCTCGGTCCGGTCCGAT
* * ** * *
24005913 CTTAGAC-TAGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCATTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTCAG
* * * *
24005977 CCGGTCGAAGAGGCATAATGCGCAAGCCGAGGATC-AGCCCCATCC-CCCTCTGTGTGCTATCGA
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCCATCCTCCC-CTATGTGCTATCAA
* * * * * * **
24006040 TCCCGTTGCCATAACCCTCAGTTCTG-CTGGGG
128 TCCCGCTGCCACAACCCTCGGTCCGGTC-CGAT
* * * * ** **
24006072 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACAAAATGGGCGTGTGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGC
* * * * * * ** ** * *
24006137 CGGCCAAAGAGGTAGAATGCGCCAGTCGGGGATCGACTCGGT-C-CCCCTGCGTGCTGTCGATCC
66 CGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCCATCCTCCCCTATGTGCTATCAATCC
* ** * *
24006200 TGCTGCTGCAACCCTCGGTCCAGTCTGAT
131 CGCTGCCACAACCCTCGGTCCGGTCCGAT
* *
24006229 CTCAGAC-TGGGAATGAACTACGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
24006256 TTAGACTGGG
Statistics
Matches: 265, Mismatches: 70, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
156 1 0.00
157 53 0.20
158 11 0.04
159 198 0.75
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGC
CGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCCATCCTCCCCTATGTGCTATCAATCC
CGCTGCCACAACCCTCGGTCCGGTCCGAT
Found at i:24006277 original size:25 final size:26
Alignment explanation
Indices: 24006232--24006280 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
24006222 GTCTGATCTC
24006232 AGACTGGGAATGAACTACGTATGCTT
1 AGACTGGGAATGAACTACGTATGCTT
*
24006258 AGACTGGG-ATGAACTCCGTATGC
1 AGACTGGGAATGAACTACGTATGC
24006281 ATAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTACGTATGCTT
Found at i:24006551 original size:171 final size:170
Alignment explanation
Indices: 24006254--24006622 Score: 379
Period size: 171 Copynumber: 2.2 Consensus size: 170
24006244 AACTACGTAT
* * *
24006254 GCTTAGACTGGGATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGCCGCTCAGT
1 GCTTAGACTGGAATGAACTCCGTATGCATAAGCCAACCCACAAAATGAGCGTACGGCCGCTCAGT
* * *** *
24006319 CAGTCAGAGAGGTGTAATGCGCAAGCCGGGGATCAGCTCGGTCCCCTTTTGCATGCTGTCGATCC
66 CAGTCAGAGAGGTGTAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCCTACATGCTGTCGATCC
**
24006384 CGCTACCGGTCCTGCTACCACAACCCCCAGTCCGACTGAG
131 CGCTACCGGTCCAACTACCACAACCCCCAGTCCGACTGAG
** ** * *
24006424 GCTTAGACATGGAATGAACTTTGTATGCCA-AAGCCAACCCATGAAATGAGGGTACGGGCGCTCA
1 GCTTAGAC-TGGAATGAACTCCGTATG-CATAAGCCAACCCACAAAATGAGCGTACGGCCGCTCA
* * *
24006488 GTC-GATCAGAGAGGTAG-AATGCGTAAGCTGGGGATC-GACCCGATCCCCCCCTACGTGCTGTC
64 GTCAG-TCAGAGAGGT-GTAATGCGCAAGCCGGGGATCAG-CCCGATCCCCCCCTACATGCTGTC
* * * * * * *
24006550 GATCCTGCTACTGGTCCAACTACCGCAACCCTCGGTCTGATCCGA-
126 GATCCCGCTACCGGTCCAACTACCACAACCCCCAGTCCGA-CTGAG
* *
24006595 TCTTAGACTGGGAATGAACTCCATATGC
1 GCTTAGACT-GGAATGAACTCCGTATGC
24006623 TTAGACATGG
Statistics
Matches: 161, Mismatches: 31, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
170 12 0.07
171 143 0.89
172 6 0.04
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (170 bp):
GCTTAGACTGGAATGAACTCCGTATGCATAAGCCAACCCACAAAATGAGCGTACGGCCGCTCAGT
CAGTCAGAGAGGTGTAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCCTACATGCTGTCGATCC
CGCTACCGGTCCAACTACCACAACCCCCAGTCCGACTGAG
Found at i:24006634 original size:26 final size:26
Alignment explanation
Indices: 24006596--24006648 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
24006586 CTGATCCGAT
24006596 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
24006622 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
24006648 C
1 C
24006649 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Done.