Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 240 of 402
Found at i:24006968 original size:158 final size:158
Alignment explanation
Indices: 24006621--24007118 Score: 440
Period size: 157 Copynumber: 3.1 Consensus size: 158
24006611 AACTCCATAT
* *
24006621 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGTGAGCGTGCGGGTGC
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAAC----GAGCGTGCAGGCGC
* * * * *
24006686 TCAGCCGATCGAAAAGGCAGAATGCACAAGTCAGGGATCGACCCGATCCCCCCTACATGCTGTTG
62 TCAGCCGAACGAAAAGGCAGAATGCACAAGCCAAGGATCGACCCGATCCCCCCTACATACTGTCG
* *
24006751 ATCCTACTACCGCAACCCTCAGTCCGGTCTGA
127 ATCCCACTACCACAACCCTCAGTCCGGTCTGA
* * * * *
24006783 TCTTAAAC-TGGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC-AGCGTGCAGGCGCTGA
1 GCTTAGACATGG-AATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCA
* * * ***
24006846 GCCGAAC-AGAGAGGCATAAT-CTGCAAGCCAAGGATCGACCC-AGTCCCCCTCTGTGTACTGTC
65 GCCGAACGA-AAAGGCAGAATGC-ACAAGCCAAGGATCGACCCGA-TCCCCC-CTACATACTGTC
* * *
24006908 GATCCCACTGCCACAACCCTCGGTCCGGT-TGGG
126 GATCCCACTACCACAACCCTCAGTCCGGTCT-GA
* *
24006941 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
* * * * * * * * * **
24007006 CCTG-CCGGAGAGGCAGAATGCGCAAGCC-GGAGATCGGCTCGAT-CCCCCTGCATGCTACCGAT
66 CC-GAACGAAAAGGCAGAATGCACAAGCCAAG-GATCGACCCGATCCCCCCTACATACTGTCGAT
** *
24007068 CCTGCTACCGCAACCCTCAGTCCGGTCTGA
129 CCCACTACCACAACCCTCAGTCCGGTCTGA
* *
24007098 TCTTAGAC-TGGGTATGAACTC
1 GCTTAGACAT-GGAATGAACTC
24007119 TGTATACTTA
Statistics
Matches: 273, Mismatches: 48, Indels: 35
0.77 0.13 0.10
Matches are distributed among these distances:
156 4 0.01
157 100 0.37
158 78 0.29
159 46 0.17
160 3 0.01
161 3 0.01
162 39 0.14
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
CCGAACGAAAAGGCAGAATGCACAAGCCAAGGATCGACCCGATCCCCCCTACATACTGTCGATCC
CACTACCACAACCCTCAGTCCGGTCTGA
Found at i:24007128 original size:26 final size:26
Alignment explanation
Indices: 24007099--24007149 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
24007089 CCGGTCTGAT
*
24007099 CTTAGACTG-GGTATGAACTCTGTATA
1 CTTAGACTGCGG-ATGAACTCCGTATA
24007125 CTTAGACTGCGGATGAACTCCGTAT
1 CTTAGACTGCGGATGAACTCCGTAT
24007150 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGCGGATGAACTCCGTATA
Found at i:24007862 original size:26 final size:26
Alignment explanation
Indices: 24007833--24007903 Score: 133
Period size: 26 Copynumber: 2.7 Consensus size: 26
24007823 TTACACTGGT
24007833 AATGAACTCTGTATGCTTAGACAAGG
1 AATGAACTCTGTATGCTTAGACAAGG
*
24007859 AATGAACTCTGTATGCTTAGACATGG
1 AATGAACTCTGTATGCTTAGACAAGG
24007885 AATGAACTCTGTATGCTTA
1 AATGAACTCTGTATGCTTA
24007904 AGCCAACCCA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.31
Consensus pattern (26 bp):
AATGAACTCTGTATGCTTAGACAAGG
Found at i:24008330 original size:159 final size:159
Alignment explanation
Indices: 24008040--24008331 Score: 334
Period size: 159 Copynumber: 1.8 Consensus size: 159
24008030 CAATTCGATT
* * *
24008040 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAACATGCGGGCGCT
1 CGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAACATGCGGGCACT
* * * * * *
24008105 CAGCTGGCCAGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGAGCCTCTCTAGCGTACTGTCG
66 CAGCCGGCCAGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGACCCCCTCTAGAGTACTATCG
24008170 ATCATGCTATCGTAACCCTCAGTCCGGTC
131 ATCATGCTATCGTAACCCTCAGTCCGGTC
* * * * *** * *
24008199 CGATCTTAGACAGGGGATGAACTCCGTTTGCCTAAGTCAACCCATGAAACGAGGGTGTGGGCATT
1 CGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAACATGCGGGCACT
* * * * * * * *
24008264 CAGCCGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTCT-GATTGCTATC
66 CAGCCGGCCAGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGA-CCCCCTCTAGAGTACTATC
24008328 GATC
130 GATC
24008332 CCATTGCCGG
Statistics
Matches: 106, Mismatches: 26, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
159 100 0.94
160 6 0.06
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (159 bp):
CGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAACATGCGGGCACT
CAGCCGGCCAGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGACCCCCTCTAGAGTACTATCG
ATCATGCTATCGTAACCCTCAGTCCGGTC
Found at i:24008879 original size:26 final size:26
Alignment explanation
Indices: 24008850--24008902 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24008840 CCGATTTGAT
24008850 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
24008876 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
24008902 C
1 C
24008903 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:24009727 original size:158 final size:156
Alignment explanation
Indices: 24009254--24009761 Score: 447
Period size: 158 Copynumber: 3.2 Consensus size: 156
24009244 AACTTCGTAT
* * *
24009254 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGTGCGGGCG
1 GCTTAGACATAGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACG-G---GCGTACGGGCG
* * **
24009318 CTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATATGCCCGGTCCCCGTCTGCGTGCTAT
62 CTTAGCCGACAGGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGGTCCCC-TCTGCGTGCTAT
*
24009383 CGATCCTGCTGCCACAAACCCTCGT-TACGATCCGA
125 CGATCCTGCTGCCA-AAACCCTCGTCT--GA-CTGA
* * * * * * *
24009418 TCTTAGA-TTGGGAATGAACTTCGTATGCCTAAGTCAACCCAAGAAACGAGTGTACGGGCG-TTG
1 GCTTAGACATAGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGGGCGTACGGGCGCTT-
* * * * * *
24009481 AGCCGATAGGAAAAGTAGAATGCGCAAACCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTC-A
65 AGCCGACAGGAGAGGCAGAATGCGCAAGCCG-GGATCGGCCCGGT-CCCCTCTGCGTGCTATCGA
* * * *
24009545 GTCCCGTTGCCACAA-CCTCGGTCTGACTGGG
128 -TCCTGCTGCCAAAACCCTC-GTCTGACT-GA
* * *
24009576 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTATGGGCGCTTA
1 GCTTAGACATAGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGGGCGTACGGGCGCTTA
* * * *
24009640 GCCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTCTGCGTGCTACCGATC
66 GCCGACAGGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGGTCCCCTCTGCGTGCTATCGATC
* * ** *
24009705 CTACTACCGTAACCCTCAGTCTGGTCTGA
130 CTGCTGCCAAAACCCTC-GTCT-GACTGA
*
24009734 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACATAGGAATGAACTCCGTATGC
24009762 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 52, Indels: 36
0.76 0.14 0.10
Matches are distributed among these distances:
157 25 0.09
158 125 0.45
159 14 0.05
160 66 0.24
161 4 0.01
163 1 0.00
164 42 0.15
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATAGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGGGCGTACGGGCGCTTA
GCCGACAGGAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGGTCCCCTCTGCGTGCTATCGATCC
TGCTGCCAAAACCCTCGTCTGACTGA
Found at i:24009776 original size:26 final size:26
Alignment explanation
Indices: 24009735--24009787 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24009725 CTGGTCTGAT
24009735 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
24009761 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
24009787 C
1 C
24009788 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:24011556 original size:158 final size:158
Alignment explanation
Indices: 24011004--24011546 Score: 515
Period size: 158 Copynumber: 3.4 Consensus size: 158
24010994 ACTCCATATG
* * * *
24011004 CTTAGACATGGAATGAAC-TCTGTATGCCTAAG-CAACCCACGAAATAAGCGTACGGGTGCTCAG
1 CTTAGACTTGGAATGAACTTC-GTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* * * *** * *
24011067 CTGGCTGAAGAGGCAGAATGTATAAGCCAGGGATTGGCCCGGTCCCCCCTACATGCTA-TCGATC
65 CCGACGGAAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCATGCTACT-GATC
* * *
24011131 TTGCTCCTACAACCCTCGGTCCGGTCTGAT
129 TTGCTCCCACAACCCTCGGTCTGGTCCGAT
* * * * ** *
24011161 CTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTACTGAGC
1 CTTAGACTTGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * * * * * *
24011226 CGATCGG-AGAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCACCTCTGCGTGCTACCGGTC
66 CGA-CGGAAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCC-CCCCTGCATGCTACTGATC
** * * * * * **
24011290 CCGCTGCCACAACCCTTGGT-TCGACTGGGG
129 TTGCTCCCACAACCCTCGGTCTGGTC-CGAT
* * * * ***
24011320 CTTAGACATAGAATGAACTAAC-TATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 CTTAGACTTGGAATGAACT-TCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAG
*
24011384 CCGACGGAAGAGGCAGAATGCGCACGCCGGGGATTGGCCCGGTCCCCCCTGCATGCTACTGATCT
65 CCGACGGAAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCATGCTACTGATCT
* * *
24011449 TGTTCCCGCAACCCTCGGTCTGGTCCAAT
130 TGCTCCCACAACCCTCGGTCTGGTCCGAT
*
24011478 CTTAGA-TTGTGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACTTG-GAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAG
24011542 CCGAC
65 CCGAC
24011547 CAGAGAGGCA
Statistics
Matches: 299, Mismatches: 76, Indels: 21
0.76 0.19 0.05
Matches are distributed among these distances:
157 28 0.09
158 151 0.51
159 119 0.40
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTTGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
CGACGGAAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCATGCTACTGATCTT
GCTCCCACAACCCTCGGTCTGGTCCGAT
Found at i:24014656 original size:26 final size:26
Alignment explanation
Indices: 24014620--24014670 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
24014610 CTGGTCTGAT
*
24014620 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24014646 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
24014671 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24015517 original size:514 final size:514
Alignment explanation
Indices: 24014891--24015900 Score: 1382
Period size: 514 Copynumber: 2.0 Consensus size: 514
24014881 TGCGGGCTAT
24014891 CGATCCCCCCCTGTGTGCTATCGATCCTACTACTGGTCCTACTGCCACAACCCTCGATCCGGTCT
1 CGATCCCCCCCTGTGTGCTATCGATCCTACTACTGGTCCTACTGCCACAACCCTCGATCCGGTCT
*
24014956 AATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGTCTAAGCCAA
66 AATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
** *
24015021 CCCATGAAACGAGCGTCCGGGCACTCAGCC-AGTT-GTAGAGGCAAAATGCGCAAGCTGG-GGAT
131 CCCACAAAACGAGCATCCGGGCACTCAGCCGA-TTAG-AGAGGCAAAATGCGCAAGC-GGAGGAT
* **
24015083 CGACCCGATCCCCCTTACGTGCTGTAGATCCTACTACCGCAACCCTCAGTCTGGTCCGATCTCAG
193 CGACCCGATCCCCCGTACGTGCTGTAGATCCTACTACCGCAACCCTCAGTCCAGTCCGATCTCAG
* * ** *
24015148 ACGGGGAATGAACACCGTATGCCTAAGTCAACCCATGAAATGAGCGTCCGGGTGCTGAGCCG-GT
258 ACGGGGAATGAACACCGTATGCCTAAGTCAACCCATGAAACGAGCGTCCAGACGCTGAGCCGACT
* * * **
24015212 CAGAGAGGCATAATGCGTAAGCCGCGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGGTCTTGCT
323 -AGAGAGGCATAATGCATAAGCCGAGGATCGGCCCGGTCCCCCTCTGCATGCTATCGGTCCCGCT
24015277 GCCACAACCCTCGGACCGGCTAGGAATTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCA
387 GCCACAACCCTCGGACCGGCTAGGAATTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * *
24015342 CGAAATA-GGCGTGCGAGTGCTTAATCGATCGGAGAGGTAGAATGCACAAGCCCAGGATCGACC
452 CGAAA-AGGGCGTGCGAGTGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCCAGGATCGACC
* * * * * *
24015405 CGATCCCCCTCTGTGTGCTGTCGATCCTGCTGCTTGTCCTGCTGCCACAACCCTCGATCCGGTCT
1 CGATCCCCCCCTGTGTGCTATCGATCCTACTACTGGTCCTACTGCCACAACCCTCGATCCGGTCT
* * *
24015470 GATCTTAGATTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAT
66 AATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
24015535 CCCACAAAATGAGCATGCGGGCACTCAGCCGATTAGAGAGGCATAATGCGTAAGCGGAGGATCGA
131 CCCACAAAACGAGCATCCGGGCACTCAGCCGATTAGAGAGGCAAAATGCGCAAGCGGAGGATCGA
* * * * ** * * * * *
24015600 CCCGATTCCCCGTGCGTGCTGTTGATCTTACTGTCGTAACCCTCGGTCCAGTCTGATCTTAGACT
196 CCCGATCCCCCGTACGTGCTGTAGATCCTACTACCGCAACCCTCAGTCCAGTCCGATCTCAGACG
** *
24015665 GGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGACGCTGAGCCGACTAGA
261 GGGAATGAACACCGTATGCCTAAGTCAACCCATGAAACGAGCGTCCAGACGCTGAGCCGACTAGA
* * *
24015730 GAGGCATAATGCATGAGCCGAGGATCGGCCTGGTCCCCCTCTGCATGCTGTCGGTCCCGCTGCCA
326 GAGGCATAATGCATAAGCCGAGGATCGGCCCGGTCCCCCTCTGCATGCTATCGGTCCCGCTGCCA
** * * ** * * *
24015795 CAACCCTCGGTTCGGTTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGTCAACCCACGAA
391 CAACCCTCGGACCGGCTAGGAATTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* *
24015860 AAGGGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGC
456 AAGGGCGTGCGAGTGCTCAACCGACCGGAGAGGCAGAATGC
24015901 GTAAGTCGGG
Statistics
Matches: 429, Mismatches: 62, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
513 3 0.01
514 423 0.99
515 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (514 bp):
CGATCCCCCCCTGTGTGCTATCGATCCTACTACTGGTCCTACTGCCACAACCCTCGATCCGGTCT
AATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCACAAAACGAGCATCCGGGCACTCAGCCGATTAGAGAGGCAAAATGCGCAAGCGGAGGATCGA
CCCGATCCCCCGTACGTGCTGTAGATCCTACTACCGCAACCCTCAGTCCAGTCCGATCTCAGACG
GGGAATGAACACCGTATGCCTAAGTCAACCCATGAAACGAGCGTCCAGACGCTGAGCCGACTAGA
GAGGCATAATGCATAAGCCGAGGATCGGCCCGGTCCCCCTCTGCATGCTATCGGTCCCGCTGCCA
CAACCCTCGGACCGGCTAGGAATTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
AAGGGCGTGCGAGTGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCCAGGATCGACC
Found at i:24015882 original size:159 final size:159
Alignment explanation
Indices: 24015498--24015915 Score: 407
Period size: 159 Copynumber: 2.6 Consensus size: 159
24015488 AACTCTGTAT
* * * *
24015498 GCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCATCCCAC-AAAATGAGCATGCGGGCACTC
1 GCTTAGACATGGAATGAACTCTCGTATGCCTAAGTCAACCCACGAAAA-GAGCGTGCGGGCGCTC
* * * * * * *
24015561 AGCCGATTAGAGAGGCATAATGCGTAAGCGGAGGATCGACCCGATTCCCCGTGCGTGCTGTTGAT
65 AGCCGACTAGAGAGGCATAATGCATAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTGTCGAT
** * **
24015626 CTTACTGTCGTAACCCTCGGTCCAGTCTGA
130 CCCACTGCCACAACCCTCGGTCCAGTCTGA
* * * * * *
24015656 TCTTAGAC-TGGGAATGAACT-TCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGACGCTG
1 GCTTAGACAT-GGAATGAACTCTCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTC
* * * * *
24015719 AGCCGACTAGAGAGGCATAATGCATGAGCCGAGGATCGGCCTGGTCCCCCTCTGCATGCTGTCGG
65 AGCCGACTAGAGAGGCATAATGCATAAGCCGAGGATCGACCCGATCCCCC-CTGCATGCTGTCGA
* * * *
24015784 TCCCGCTGCCACAACCCTCGGTTCGGT-TGGG
129 TCCCACTGCCACAACCCTCGGTCCAGTCT-GA
* *
24015815 GCTTAGACATGGAATGAACTCTC-TATGCCTAAGTCAACCCACGAAAAGGGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCTCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCA
** * * * *
24015879 GCCGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCG
66 GCCGACTAGAGAGGCATAATGCATAAGCCGAGGATCG
24015916 CCTAGATCCT
Statistics
Matches: 207, Mismatches: 46, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 89 0.43
159 114 0.55
160 3 0.01
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCTCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCA
GCCGACTAGAGAGGCATAATGCATAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTGTCGATC
CCACTGCCACAACCCTCGGTCCAGTCTGA
Found at i:24016025 original size:26 final size:26
Alignment explanation
Indices: 24015974--24016026 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24015964 CTGATCCAAC
* *
24015974 CTTAGATTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
24016000 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
24016026 C
1 C
24016027 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:24016202 original size:26 final size:26
Alignment explanation
Indices: 24016158--24016210 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24016148 CTGGTTCGAT
*
24016158 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
**
24016184 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
24016210 C
1 C
24016211 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATAAACTCCGTATG
Found at i:24016277 original size:184 final size:183
Alignment explanation
Indices: 24015838--24016280 Score: 505
Period size: 184 Copynumber: 2.4 Consensus size: 183
24015828 ATGAACTCTC
* * * * *
24015838 TATGCCTAAGTCAACCCACGAAAAGGGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGT
1 TATGCCTAAGTCAACACACG-AAACGGCGTGCGGGCGCTCAGCTGACCAGAGAGGCAGAATGCGT
* * * * * *
24015903 AAGTCGGGGATCGCCTAGATCCTCCTTGCGTGTTGTCGATCCTATTGCTGTAATCCTCGATCTGA
65 AAGCCAGGGATCGCCTAGATCCTCCTTGCGTGCTGTCGATCCTACTGCCGCAATCCTCGATCTGA
* * * *
24015968 TCCAACCTTAGATTGGGAATGAACTTCATATGCTTAGACTGGGGATGAACTCCG
130 TCCAACCTTAGACTGGAAATGAACTCCATATGCTTAGACTGGGGATAAACTCCG
* * * * * * *
24016022 TATGCCTAAGCCAACACACGAAACGGACGTGCGGGCGCTCAG-TCAACAAAAACGTCAAAATGCG
1 TATGCCTAAGTCAACACACGAAACGG-CGTGCGGGCGCTCAGCTGACCAGAGA-GGCAGAATGCG
* * *
24016086 CAAGCCAGGGATCGGCC-CGATCCCTCC-TGCGTGCTGTCGATCCTGCTGCCGCAATCCTCGATC
64 TAAGCCAGGGATC-GCCTAGAT-CCTCCTTGCGTGCTGTCGATCCTACTGCCGCAATCCTCGATC
* * * * *
24016149 TGGTTCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGGATAAACTCCG
127 TGATCCAACCTTAGACTGGAAATGAACTCCATATGCTTAGACTGGGGATAAACTCCG
* * * *
24016206 TATGCCTAAGTCAACGCACGAAACGAGCGTACGGGCGCTCAGCTGGCCAGAGAGGCAGAATGTGT
1 TATGCCTAAGTCAACACACGAAACG-GCGTGCGGGCGCTCAGCTGACCAGAGAGGCAGAATGCGT
24016271 AAGCCAGGGA
65 AAGCCAGGGA
24016281 CTGACTCGGT
Statistics
Matches: 211, Mismatches: 42, Indels: 12
0.80 0.16 0.05
Matches are distributed among these distances:
183 9 0.04
184 188 0.89
185 14 0.07
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.21
Consensus pattern (183 bp):
TATGCCTAAGTCAACACACGAAACGGCGTGCGGGCGCTCAGCTGACCAGAGAGGCAGAATGCGTA
AGCCAGGGATCGCCTAGATCCTCCTTGCGTGCTGTCGATCCTACTGCCGCAATCCTCGATCTGAT
CCAACCTTAGACTGGAAATGAACTCCATATGCTTAGACTGGGGATAAACTCCG
Found at i:24016530 original size:26 final size:26
Alignment explanation
Indices: 24016501--24016553 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24016491 CCAGTCCGAT
*
24016501 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
24016527 CTTAGACTGGGGATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
24016553 C
1 C
24016554 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:24016638 original size:343 final size:342
Alignment explanation
Indices: 24016012--24016648 Score: 859
Period size: 343 Copynumber: 1.9 Consensus size: 342
24016002 TAGACTGGGG
* * *
24016012 ATGAACTCCGTATGCCTAAGCCAACACACGAAACGGACGTGCGGGCGCTCAGTCAACAAAAACGT
1 ATGAACTCCCTATGCCTAAGCCAACACACGAAACGGACATGCGGGCGCTCAGCCAACAAAAACGT
* * *
24016077 CAAAATGCGCAAGCCAGGGATCGGCCCGATCCCTCCTGCGTGCTGTCGATCCTGCTGCCGCAATC
66 CAAAATGCGCAAGCCAGGGATAGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACC
** * *
24016142 CTCGATCTGGTTCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGGATAAACTCCGT
131 CTCGATCCAGTCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGGATAAACTCCCT
* * * ***
24016207 ATGCCTAAGTCAACGCACGAAACGAGCGTACGGGCGCTCAGCTGGCCAGAGAGGCAGAATGTGTA
196 ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCTCGCCAGAGAGGCAGAATGCACA
* *
24016272 AGCCAGGGACTGACTCGGTCCCCCTCTACATGCTGCCAGTCCCACTGCCACAACCCTCGATTCGG
261 AGCCAAGGACAGACTCGGTCCCCCT-TACATGCTGCCAGTCCCACTGCCACAACCCTCGATTCGG
24016337 CTAAGGCTTAAACATGGA
325 CTAAGGCTTAAACATGGA
* * * ** ** * *
24016355 ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCGCTCAGCCGGCCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACACACGAAACGGACATGCGGGCGCTCAGCC-AACAAAAACG
* * * * *
24016420 T-AGAATGCGCAAGCCGGGGATAGGCCC-AGTCCCCCCTGTGTGTTGTCGATCCTGCTGTCGCAA
65 TCAAAATGCGCAAGCCAGGGATAGGCCCGA-TCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAA
* *
24016483 CCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCC
129 CCCTCGATCCAGTCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGGATAAACTCC
* * *
24016548 CTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAG-TCGCCCGAAGAGGCAGAATGC
194 CTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCTCGCCAG-AGAGGCAGAATGC
*
24016612 ACAAGCCAAGGATCAG-CTCGGTCCCCCTTGCATGCTG
258 ACAAGCCAAGGA-CAGACTCGGTCCCCCTTACATGCTG
24016649 TCGATCCTGC
Statistics
Matches: 252, Mismatches: 38, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
342 14 0.06
343 231 0.92
344 7 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (342 bp):
ATGAACTCCCTATGCCTAAGCCAACACACGAAACGGACATGCGGGCGCTCAGCCAACAAAAACGT
CAAAATGCGCAAGCCAGGGATAGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACC
CTCGATCCAGTCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGGATAAACTCCCT
ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCTCGCCAGAGAGGCAGAATGCACA
AGCCAAGGACAGACTCGGTCCCCCTTACATGCTGCCAGTCCCACTGCCACAACCCTCGATTCGGC
TAAGGCTTAAACATGGA
Found at i:24016650 original size:527 final size:527
Alignment explanation
Indices: 24015657--24016659 Score: 1266
Period size: 527 Copynumber: 1.9 Consensus size: 527
24015647 CCAGTCTGAT
* * * * *
24015657 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGACGCTGAGC
1 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGACGCTCAGC
* * * * * * *
24015722 CGACTAGAGAGGCATAATGCATGAGCCGAGGATCGGCCTGGTCCCCCTCTGCATGCTGTCGGTCC
66 CGACCAGAGAGGCAGAATGCATAAGCCGAGGATCGGACTGGTCCCCCTCTACATGCTGCCAGTCC
* * * ** * * *
24015787 CGCTGCCACAACCCTCGGTTCGGTTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGTCAA
131 CACTGCCACAACCCTCGATTCGGCTAAGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * *
24015852 CCCACGAAAAGGGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCGC
196 CCCACGAAAAGGGCATGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGC
* * * * * * * *
24015917 CTAGATCCTCCTTGCGTGTTGTCGATCCTATTGCTGTAATCCTCGATCTGATCCAACCTTAGATT
261 CCAGATCCCCCCTGCGTGTTGTCGATCCTACTGCTGCAACCCTCGATCAGATCCAACCTTAGACT
* *
24015982 GGGAATGAACTTCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACACACGAAACG
326 GGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCCTATGCCTAAGCCAACACACGAAACG
* * * * *
24016047 GACGTGCGGGCGCTCAGTCAACAAAAACGTCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCTC
391 GACGTGCGGGCACTCAGTCAACAAAAACGGCAAAATGCACAAGCCAAGGATCAGCCCGATCCCTC
*
24016112 CTGCGTGCTGTCGATCCTGCTGCCGCAATCCTCGATCTGGTTCGATCTTAGACTGGAAATGAACT
456 CTGCATGCTGTCGATCCTGCTGCCGCAATCCTCGATCTGGTTCGATCTTAGACTGGAAATGAACT
24016177 CCGTATG
521 CCGTATG
* * * *
24016184 CTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACGCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGACGCTCAGC
* * ** *
24016249 TGGCCAGAGAGGCAGAATGTGTAAGCC-AGGGA-CTGACTCGGTCCCCCTCTACATGCTGCCAGT
66 CGACCAGAGAGGCAGAATGCATAAGCCGA-GGATCGGACT-GGTCCCCCTCTACATGCTGCCAGT
24016312 CCCACTGCCACAACCCTCGATTCGGCTAAGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCC
129 CCCACTGCCACAACCCTCGATTCGGCTAAGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCC
* * *
24016377 AACCCACGAAATGGGCATGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATA
194 AACCCACGAAAAGGGCATGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGAT-
* * * * *
24016442 GGCCCAG-TCCCCCCTGTGTGTTGTCGATCCTGCTG-TCGCAACCCTCGATCCAG-TCCGATCTT
258 CGCCCAGATCCCCCCTGCGTGTTGTCGATCCTACTGCT-GCAACCCTCGAT-CAGATCCAACCTT
* * *
24016504 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCCTATGCCTAAGTCAACCCACG
321 AGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCCTATGCCTAAGCCAACACACG
* ** * * * *
24016569 AAA-TGAGCGTGCGGGCACTCAGTCGCCCGAAGA-GGCAGAATGCACAAGCCAAGGATCAGCTCG
386 AAACGGA-CGTGCGGGCACTCAGTC-AACAAAAACGGCAAAATGCACAAGCCAAGGATCAGCCCG
*
24016632 GTCCC-CCTTGCATGCTGTCGATCCTGCT
449 ATCCCTCC-TGCATGCTGTCGATCCTGCT
24016660 ACTGGTCCTG
Statistics
Matches: 400, Mismatches: 68, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
526 10 0.03
527 379 0.95
528 11 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (527 bp):
CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGACGCTCAGC
CGACCAGAGAGGCAGAATGCATAAGCCGAGGATCGGACTGGTCCCCCTCTACATGCTGCCAGTCC
CACTGCCACAACCCTCGATTCGGCTAAGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAAAGGGCATGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGC
CCAGATCCCCCCTGCGTGTTGTCGATCCTACTGCTGCAACCCTCGATCAGATCCAACCTTAGACT
GGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCCTATGCCTAAGCCAACACACGAAACG
GACGTGCGGGCACTCAGTCAACAAAAACGGCAAAATGCACAAGCCAAGGATCAGCCCGATCCCTC
CTGCATGCTGTCGATCCTGCTGCCGCAATCCTCGATCTGGTTCGATCTTAGACTGGAAATGAACT
CCGTATG
Found at i:24016668 original size:12 final size:13
Alignment explanation
Indices: 24016653--24016685 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
24016643 ATGCTGTCGA
24016653 TCCTGCTACT-GG
1 TCCTGCTACTCGG
24016665 TCCTGCTA-TCGG
1 TCCTGCTACTCGG
24016677 TCCTGCTAC
1 TCCTGCTAC
24016686 CACAACCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 1 0.05
12 18 0.95
ACGTcount: A:0.09, C:0.36, G:0.21, T:0.33
Consensus pattern (13 bp):
TCCTGCTACTCGG
Found at i:24016738 original size:26 final size:26
Alignment explanation
Indices: 24016709--24016761 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
24016699 CCGGCCCGAT
24016709 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
24016735 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
24016761 C
1 C
24016762 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:24017250 original size:26 final size:26
Alignment explanation
Indices: 24017209--24017261 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24017199 CTGGTTCGAT
24017209 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
24017235 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
24017261 C
1 C
24017262 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:24017641 original size:26 final size:26
Alignment explanation
Indices: 24017590--24017642 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
24017580 CCGGTCTGAT
***
24017590 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
24017616 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
24017642 C
1 C
24017643 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:24017734 original size:881 final size:881
Alignment explanation
Indices: 24016688--24018535 Score: 2353
Period size: 881 Copynumber: 2.1 Consensus size: 881
24016678 CCTGCTACCA
* * *
24016688 CAACCCTTGGTCCGGCCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACATGGAATGAAC
1 CAACCCTCGGTCCGGTCCGATCTTAGACTG-GAATGAACTCTGTATGCTTAGACATGGAATGAAC
* * * * * *
24016753 TCCGTATGCCTAAGCCAACCCATGAAAAGAGTGTGCGGGTGCTCAGCCTATCGGAGAGGCAGAAT
65 TCCGTATGCCTAAGCCAACCCATGAAAAGAATGTGCAGGTGCTAAACCGACCGGAGAGGCAGAAT
*
24016818 GCACAAGCCGGGGACCGACCTGATCCCCCCTGTGTGCTATCGATCCTACTATCGTAACCCTCGAT
130 GCACAAGCCGGGGACCGACCTGATCCCCCCTGTGTGCTATCGATCCTACTATCGCAACCCTCGAT
* * *
24016883 CCGATC-CATTCTTAGACCGGGAATGAAGTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-T
195 CCGATCTCA-TCTTAAACCGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGT
* * * * ** *
24016946 CGGGCGCTGAGCCGGTC-AGGGAGGCATAATGCGTAAGCCAGGGATTGAGCCAG-TCCTCCTCTA
259 -GGGCGCTCAACCGATCGA-AGAGGCATAATGCACAAGCCAGGGATTGA-CCAGATCCCCCTCTA
* * * * *
24017009 CGAGCTGTCGGTCCCGCTGCCACAACCCTCGGTCC-GATTGGGGCTTAGACATGGAATGAACTCC
321 CGAGCTGTCAGTCCCGCTACAACAACCCTCGGTCCAG-CTAGGGCTTAGACATGGAATGAACTCC
* * * *
24017073 C-TATGCCTAAGCCAACCCATGAAATAGGCTTGCGTACACTCAG-TCGGTCGGAGAGGTAGAATG
385 CTTATGCCTAAGCCAACCCATGAAATAGGCTTGCGGACACTCAGCT-GGCCGGAAAGGCAGAATG
* *
24017136 CGCAAGCC-GGGTATCAACCCGGTCC-CCCTACGTGCTACCGATCCT-G-TAGCCACAACCCTCG
449 CACAAGCCAGGG-ATCAACCCGATCCGCCCTACGTGCTACCGAT-CTGGCTA-CCACAACCCTCG
* *
24017197 GTCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGC
511 GTCGGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGC
* *
24017262 CAAAGTCAACCCACGAAAGCA-GCGTACAGGCGTTCAGTCGACTAGAGAGGCCAACTGGAA-AGG
576 CAAAGTCAACCCACGAAA-CATGCGTACAGGCATTCAGTCGACCAGAGAGGCCAACT-GAAGAGG
** * * * *
24017325 CATAATGTGCAAGCCGGGGATCAGCCC-GATCCACCTCTGCGTGCTGTCGATCCCACTGTCGGTC
639 CATAATACGCAAGCCGAGGATCAGCCCGGATCC-CCTCTACGTGCTATCGATCCCACTGCCGGTC
* * * *
24017389 CTGCTGCCATAACCCTCGGTCC-AGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAATCC
703 CTGCTACCACAACCCTCGGTCCGA-CTGGGGCTTAGACATGGAATGAACTCCGTACGCCTAAGCC
* ** * * * * * *
24017453 AACCCACGAAACAAGCGTGCGGGTGCTCAACCGATCAGAGAGGCAGAATGCGTAACCCGGGGATC
767 AACCCACGAAACAAGCGTGCAGGCACTCAACCAATCAAAAAGGCAGAATGCGTAACCCGAGAATA
* * * *
24017518 GACCCGGTCCCCCCCTGCATGCTACCGATCCTGCTGTTGGTCGTGCTG-TCG
832 GACCCGGT-CCCCCCTGCATGCTACCGATCCTACTGCTAGTCCTGCTGCT-G
* *
24017569 CAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTTTGTATGCTTAGACATGGAATGAAC
1 CAACCCTCGGTCCGGTCCGATCTTAGACT-GGAATGAACTCTGTATGCTTAGACATGGAATGAAC
* *
24017634 TCCATATGCCTAAGCCAACCCATGAAACGAATGTGCAGGTGCTAAACCGACCGGAGAGGCAGAAT
65 TCCGTATGCCTAAGCCAACCCATGAAAAGAATGTGCAGGTGCTAAACCGACCGGAGAGGCAGAAT
** * * * * *
24017699 GCGTAAGTCGGGGACCGA-CTCGATCCCCCCTGTGTGCTATCGATCCTGCTGTCGCAACCCTTGG
130 GCACAAGCCGGGGACCGACCT-GATCCCCCCTGTGTGCTATCGATCCTACTATCGCAACCCTCGA
* * * *
24017763 TCCGGTCTGATCTTAAACTGGGAATGAACTCCATATGCCTAAGTCCACCCACGAAACGAGCGTGT
194 TCCGATCTCATCTTAAACCGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGT
* * * *
24017828 GGGCGCTCAACCGATCGAAGAGGCATAATGCACAAGTCAGGGATTGACCTGATCCCCCTCTGCGT
259 GGGCGCTCAACCGATCGAAGAGGCATAATGCACAAGCCAGGGATTGACCAGATCCCCCTCTACGA
*
24017893 GCTGTCAGTCTCGCTACAACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTTA
324 GCTGTCAGTCCCGCTACAACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTTA
** * *
24017958 TGCCTAAGCTGACCCATGAAATGGGCTTGCGGGCACTCAGCTGGCCGGAAAGGCAGAATGCACAA
389 TGCCTAAGCCAACCCATGAAATAGGCTTGCGGACACTCAGCTGGCCGGAAAGGCAGAATGCACAA
* * * *
24018023 GCCAGGGATCAACCCGATCCGTCCTGCGTGCTATCGATCTGGCTACCGCAACCCTCGGTCGGGTC
454 GCCAGGGATCAACCCGATCCGCCCTACGTGCTACCGATCTGGCTACCACAACCCTCGGTCGGGTC
* * *
24018088 CGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAGGTCA
519 CGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCAAAGTCA
* * * * * * *
24018153 ACCCACGAAACATGGGTGCGGGCATTCAGTCGGCCGGAGAGGCCGACTGAAGAGGCATAATACGT
584 ACCCACGAAACATGCGTACAGGCATTCAGTCGACCAGAGAGGCCAACTGAAGAGGCATAATACGC
* * ** *
24018218 AAGCTGAGGATCAGCCCGGTTCCCCTCTACGTGCTATCGATCCTGCTGCCGGTCTTGCTACCACA
649 AAGCCGAGGATCAGCCCGGATCCCCTCTACGTGCTATCGATCCCACTGCCGGTCCTGCTACCACA
** * *
24018283 ACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTTTGTACGCGTAAGCCAACCCATGAAAC
714 ACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAAC
* * * * * * *
24018348 GAGTGTGCAGGCACTCAGCCAATCAAAAAGGCAGAATGCGTAAGCCGAGAATAGGCTCGGTCCCT
779 AAGCGTGCAGGCACTCAACCAATCAAAAAGGCAGAATGCGTAACCCGAGAATAGACCCGGTCCCC
** *
24018413 CCTGTGTGCTATCGATCCTACTGCTAGTCCTGCTGCTG
844 CCTGCATGCTACCGATCCTACTGCTAGTCCTGCTGCTG
* *
24018451 CAACCCTCGGTCCGGTCCAATCTTAGATTGGGAATGAACTCTGTATGCTTAGACATGGAATGAAC
1 CAACCCTCGGTCCGGTCCGATCTTAGACT-GGAATGAACTCTGTATGCTTAGACATGGAATGAAC
24018516 TCCGTATGCCTAAGCCAACC
65 TCCGTATGCCTAAGCCAACC
24018536 TGCGAAACAA
Statistics
Matches: 828, Mismatches: 121, Indels: 35
0.84 0.12 0.04
Matches are distributed among these distances:
880 5 0.01
881 324 0.39
882 194 0.23
883 298 0.36
884 7 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (881 bp):
CAACCCTCGGTCCGGTCCGATCTTAGACTGGAATGAACTCTGTATGCTTAGACATGGAATGAACT
CCGTATGCCTAAGCCAACCCATGAAAAGAATGTGCAGGTGCTAAACCGACCGGAGAGGCAGAATG
CACAAGCCGGGGACCGACCTGATCCCCCCTGTGTGCTATCGATCCTACTATCGCAACCCTCGATC
CGATCTCATCTTAAACCGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGTGG
GCGCTCAACCGATCGAAGAGGCATAATGCACAAGCCAGGGATTGACCAGATCCCCCTCTACGAGC
TGTCAGTCCCGCTACAACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTTATG
CCTAAGCCAACCCATGAAATAGGCTTGCGGACACTCAGCTGGCCGGAAAGGCAGAATGCACAAGC
CAGGGATCAACCCGATCCGCCCTACGTGCTACCGATCTGGCTACCACAACCCTCGGTCGGGTCCG
ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCAAAGTCAAC
CCACGAAACATGCGTACAGGCATTCAGTCGACCAGAGAGGCCAACTGAAGAGGCATAATACGCAA
GCCGAGGATCAGCCCGGATCCCCTCTACGTGCTATCGATCCCACTGCCGGTCCTGCTACCACAAC
CCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACAA
GCGTGCAGGCACTCAACCAATCAAAAAGGCAGAATGCGTAACCCGAGAATAGACCCGGTCCCCCC
TGCATGCTACCGATCCTACTGCTAGTCCTGCTGCTG
Found at i:24018133 original size:26 final size:26
Alignment explanation
Indices: 24018092--24018144 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24018082 CGGGTCCGAT
*
24018092 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
24018118 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
24018144 C
1 C
24018145 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:24018642 original size:883 final size:880
Alignment explanation
Indices: 24016688--24018719 Score: 2405
Period size: 883 Copynumber: 2.3 Consensus size: 880
24016678 CCTGCTACCA
* * * *
24016688 CAACCCTTGGTCCGGCCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACATGGAATGAAC
1 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAAC
*
24016753 TCCGTATGCCTAAGCCAACCCATGAAA-AGAGTGTGCGGGTGCTCAGCCTATCGGAGAGGCAGAA
66 TCCGTATGCCTAAGCCAACCCATGAAACA-AGTGTGCGGGTGCTCAGCCAATCGGAGAGGCAGAA
* * * *
24016817 TGCACAAGCCGGGGACCGACCTGATCCCCCCTGTGTGCTATCGATCCTACTATCGTAACCCTCGA
130 TGCACAAGCCGGGGACCGATC-GATCCCCCCTGTGTGCTATCGATCCTACTGTCGCAACCCTCGG
* * * * * *
24016882 TCCGATC-CATTCTTAGACCGGGAATGAAGTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-
194 TCCGGTCTGA-TCTTAGACTGGGAATGAACTCCATATGCCTAAGTCCACCCACGAAACGAGCGTG
* * * * ** *
24016945 TCGGGCGCTGAGCCGGTCAGGGAGGCATAATGCGTAAGCCAGGGATTGAGCCAGTCCTCCTCTAC
258 T-GGGCGCTCAACCGATCAGAGAGGCATAATGCACAAGCCAGGGATTGAGCCAGTCCCCCTCTAC
* * * * *
24017010 GAGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCT
322 GAGCTGTCAGTCCCGCTACAACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCT
* * * * *
24017075 ATGCCTAAGCCAACCCATGAAATAGGCTTGCGTACACTCAGTCGGTCGGAGAGGTAGAATGCGCA
387 ATGCCTAAGCCAACCCATGAAATAGGCTTGCGGACACTCAGTCGGCCGGAAAGGCAGAATGCACA
* * *
24017140 AGCCGGGTATCAACCCGGTCCCCCTACGTGCTACCGATCCTGTAGCCACAACCCTCGGTCTGGTT
452 AGCCGGGTATCAACCCGATCCCCCTACGTGCTACCGATCCTGTAGCCACAACCCTCGGTCGGGTC
24017205 CGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCAAAGTCA
517 CGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCAAAGTCA
* * **
24017270 ACCCACGAAAGCAGCGTACAGGCGTTCAGTCGACTAGAGAGGCCAACTGGAAAGGCATAATGTGC
582 ACCCACGAAAGCAGCGTACAGGCATTCAGTCGACCAGAGAGGCCAACTGGAAAGGCATAATACGC
* * * * * *
24017335 AAGCCGGGGATCAGCCCGATCCACCTCTGCGTGCTGTCGATCCCACTGTCGGTCCTGCTGCCATA
647 AAGCCGAGGATCAGCCCGATCCACCTCTACGTGCTATCGATCCCACTGCCGGTCCTGCTACCACA
* *
24017400 ACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGAAAC
712 ACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAAC
* ** * * * * * *
24017465 AAGCGTGCGGGTGCTCAACCGATCAGAGAGGCAGAATGCGTAACCCGGGGATCGACCCGGTCCCC
777 AAGCGTGCAGGCACTCAACCAATCAAAAAGGCAGAATGCGTAACCCGAGAATAGACCCGGTCCCC
* * * *
24017530 CCCTGCATGCTACCGATCCTGCTGTTGGTCGTGCTGTCG
842 CCCTGCATGCTACCGATCCTACTGCTAGTCCTGCTGTCG
* * *
24017569 CAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTTTGTATGCTTAGACATGGAATGAAC
1 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAAC
* * * * * *
24017634 TCCATATGCCTAAGCCAACCCATGAAACGAA-TGTGCAGGTGCTAAACCGACCGGAGAGGCAGAA
66 TCCGTATGCCTAAGCCAACCCATGAAAC-AAGTGTGCGGGTGCTCAGCCAATCGGAGAGGCAGAA
** * * *
24017698 TGCGTAAGTCGGGGACCGACTCGATCCCCCCTGTGTGCTATCGATCCTGCTGTCGCAACCCTTGG
130 TGCACAAGCCGGGGACCGA-TCGATCCCCCCTGTGTGCTATCGATCCTACTGTCGCAACCCTCGG
*
24017763 TCCGGTCTGATCTTAAACTGGGAATGAACTCCATATGCCTAAGTCCACCCACGAAACGAGCGTGT
194 TCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCCACCCACGAAACGAGCGTGT
* * *
24017828 GGGCGCTCAACCGATC-GAAGAGGCATAATGCACAAGTCAGGGATTGA-CCTGATCCCCCTCTGC
259 GGGCGCTCAACCGATCAG-AGAGGCATAATGCACAAGCCAGGGATTGAGCCAG-TCCCCCTCTAC
* *
24017891 GTGCTGTCAGTCTCGCTACAACAACCCTCGGTCC-AGCTAGGGCTTAGACATGGAATGAACTCCC
322 GAGCTGTCAGTCCCGCTACAACAACCCTCGGTCCGA-CTAGGGCTTAGACATGGAATGAACTCCC
** * *
24017955 TTATGCCTAAGCTGACCCATGAAATGGGCTTGCGGGCACTCAG-CTGGCCGGAAAGGCAGAATGC
386 -TATGCCTAAGCCAACCCATGAAATAGGCTTGCGGACACTCAGTC-GGCCGGAAAGGCAGAATGC
* * * *
24018019 ACAAGCCAGGG-ATCAACCCGATCCGTCCTGCGTGCTATCGAT-CTGGCTA-CCGCAACCCTCGG
449 ACAAGCC-GGGTATCAACCCGATCC-CCCTACGTGCTACCGATCCT-G-TAGCCACAACCCTCGG
*
24018081 TCGGGTCCGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCC
510 TCGGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCC
* * * * * * * *
24018146 TAGGTCAACCCACGAAA-CATGGGTGCGGGCATTCAGTCGGCCGGAGAGGCCGACT-GAAGAGGC
575 AAAGTCAACCCACGAAAGCA-GCGTACAGGCATTCAGTCGACCAGAGAGGCCAACTGGAA-AGGC
* * * ** *
24018209 ATAATACGTAAGCTGAGGATCAGCCCGGTTCC-CCTCTACGTGCTATCGATCCTGCTGCCGGTCT
638 ATAATACGCAAGCCGAGGATCAGCCC-GATCCACCTCTACGTGCTATCGATCCCACTGCCGGTCC
** *
24018273 TGCTACCACAACCCTCGGTCC-GACTGGGGCTTAGACATGGAATGAACTTTGTACGCGTAAGCCA
702 TGCTACCACAACCCTCGGTCCAG-CTGGGGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCA
* * * * *
24018337 ACCCATGAAACGAGTGTGCAGGCACTCAGCCAATCAAAAAGGCAGAATGCGTAAGCCGAGAATAG
766 ACCCACGAAACAAGCGTGCAGGCACTCAACCAATCAAAAAGGCAGAATGCGTAACCCGAGAATAG
* * * ** *
24018402 GCTCGGT-CCCTCCTGTGTGCTATCGATCCTACTGCTAGTCCTGCTG-CTG
831 ACCCGGTCCCCCCCTGCATGCTACCGATCCTACTGCTAGTCCTGCTGTC-G
* *
24018451 CAACCCTCGGTCCGGTCCAATCTTAGATTGGGAATGAACTCTGTATGCTTAGACATGGAATGAAC
1 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAAC
*** * *
24018516 TCCGTATGCCTAAGCCAACCTGCGAAACAAGCGTGCGGGCGCTCAGCCAATCGGAGAGGCAGAAT
66 TCCGTATGCCTAAGCCAACCCATGAAACAAGTGTGCGGGTGCTCAGCCAATCGGAGAGGCAGAAT
* * * * * * * * *
24018581 GCACAAGCCGAGGATCGGATCGATCCCCCTCTGCGTGCT-GCTGGTCCCATTGCCACAACCCTCG
131 GCACAAGCCGGGGA-CCGATCGATCCCCC-CTGTGTGCTATC-GATCCTACTGTCGCAACCCTCG
* ** * * * *
24018645 GTCC-GACTGGGGCTTAGACAT-GGAATGAACTCCCTATCCCTAAG-CCAACCCATGAAACGGGC
193 GTCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCC-ACCCACGAAACGAGC
**
24018707 GTGCAGGCGCTCA
255 GTGTGGGCGCTCA
24018720 GCTGGCCGAT
Statistics
Matches: 969, Mismatches: 156, Indels: 50
0.82 0.13 0.04
Matches are distributed among these distances:
880 5 0.01
881 326 0.34
882 252 0.26
883 379 0.39
884 7 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (880 bp):
CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAAC
TCCGTATGCCTAAGCCAACCCATGAAACAAGTGTGCGGGTGCTCAGCCAATCGGAGAGGCAGAAT
GCACAAGCCGGGGACCGATCGATCCCCCCTGTGTGCTATCGATCCTACTGTCGCAACCCTCGGTC
CGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCCACCCACGAAACGAGCGTGTGG
GCGCTCAACCGATCAGAGAGGCATAATGCACAAGCCAGGGATTGAGCCAGTCCCCCTCTACGAGC
TGTCAGTCCCGCTACAACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGC
CTAAGCCAACCCATGAAATAGGCTTGCGGACACTCAGTCGGCCGGAAAGGCAGAATGCACAAGCC
GGGTATCAACCCGATCCCCCTACGTGCTACCGATCCTGTAGCCACAACCCTCGGTCGGGTCCGAT
CTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCAAAGTCAACCC
ACGAAAGCAGCGTACAGGCATTCAGTCGACCAGAGAGGCCAACTGGAAAGGCATAATACGCAAGC
CGAGGATCAGCCCGATCCACCTCTACGTGCTATCGATCCCACTGCCGGTCCTGCTACCACAACCC
TCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACAAGC
GTGCAGGCACTCAACCAATCAAAAAGGCAGAATGCGTAACCCGAGAATAGACCCGGTCCCCCCCT
GCATGCTACCGATCCTACTGCTAGTCCTGCTGTCG
Found at i:24018817 original size:26 final size:26
Alignment explanation
Indices: 24018781--24018833 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24018771 CCGATTCGAT
24018781 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
24018807 CTTAGACTGGGGATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
24018833 C
1 C
24018834 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:24019362 original size:159 final size:157
Alignment explanation
Indices: 24019175--24019472 Score: 366
Period size: 159 Copynumber: 1.9 Consensus size: 157
24019165 CGATCTGAGC
* * * * * **
24019175 TTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTGAGTC
1 TTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAACGTACGGGCGCTCAACC
* * * * * * *
24019240 GATCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTACGTGTTGCCGGTCCT
66 AACCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCAGGT-CCCC-CTACGTGCTGCCGATCCT
24019305 GCTGCCACAACTCTCATTCTGGCTGGGGT
129 GCTGCCACAACTCTCATTCTGGCTGGGGT
* *
24019334 TTAGACAT-GGAATGAACTCCT-TATGCCTAAGCCAACCCATGAAACGAACGTACGGGTGCTCAA
1 TTAGAC-TGGGAATGAACT-CTATATGCCTAAGCCAACCCACGAAACGAACGTACGGGCGCTCAA
* * *
24019397 CCAACCAGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTACGTGCTGTCGATCCT
64 CCAACCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCAGGTCCCCCTACGTGCTGCCGATCCT
*
24019462 GCTGCTACAAC
129 GCTGCCACAAC
24019473 CCTAGGTTCA
Statistics
Matches: 117, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
157 25 0.21
158 4 0.03
159 85 0.73
160 3 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
TTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAACGTACGGGCGCTCAACC
AACCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCAGGTCCCCCTACGTGCTGCCGATCCTGC
TGCCACAACTCTCATTCTGGCTGGGGT
Found at i:24019908 original size:26 final size:26
Alignment explanation
Indices: 24019870--24019919 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
24019860 TCGGTTCAAT
24019870 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
*
24019896 CTTAGACAT-GGAATGAAGTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
24019920 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:24020020 original size:367 final size:360
Alignment explanation
Indices: 24019334--24020025 Score: 745
Period size: 367 Copynumber: 1.9 Consensus size: 360
24019324 TGGCTGGGGT
* * * *
24019334 TTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGAACGTACGGGTGCTCAACC
1 TTAGACATGGAATGAACTCCGTATACCTAAGCCAAACCACGAAACGAACGTACGGGTGCTCAACC
*
24019399 AACCAGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTACGTGCTGTCGATCCTGC
66 AACCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCTACGTGCTGTCGATCCTGC
* ** * * **
24019464 TGCTACAACCCTAGGTTCAGTTTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGGG
131 TGCTACAACCCTAGATTCAGTTCAATCTTAGACTAGGAATGAACTCCGTACGCTTAGACTGGGAA
* * * *
24019529 TGAACTCCGTATGCCTATGTCAACCCATGGAACGAGCGTGCAGGCATTCAACCTGTCGGAGAGGC
196 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGG-A-GC-ACC-GTC---GAGGC
* ** * *
24019594 CGGTCAGAGAGGTATAATATGCAAGCCAAGGATCAGCCCGATCCCTCTATGCATGCTGTCGATCC
254 CGGTCAGAGAGGTAGAATACACAAGCCAAGGATCAGCCAGATCCCCCTATGCATGCTGTCGATCC
24019659 CGCTATCGATCCTGCTGTCATAACCCTCGGTCCGACTGTGGC
319 CGCTATCGATCCTGCTGTCATAACCCTCGGTCCGACTGTGGC
** *
24019701 TTAGACATGGAATGAACTCCGTATACCTAAGCCAAACCACGAAACGAGGGTGCGGGTGCTCAACC
1 TTAGACATGGAATGAACTCCGTATACCTAAGCCAAACCACGAAACGAACGTACGGGTGCTCAACC
* ** *
24019766 GACCAGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCCCTACGTGTTGTCGATCCCG
66 AACCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGT-CCCCCTACGTGCTGTCGAT--C-
* * * *
24019831 CTGCTAGTCCTGTTGTCTCAACCCTCGATTCGGTTCAATCTTAGACTGGGAATGAACTCCGTACG
127 CTGCT-G--C-----T-ACAACCCTAGATTCAGTTCAATCTTAGACTAGGAATGAACTCCGTACG
* *
24019896 CTTAGACAT-GGAATGAAGTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GG-GC-GC-
183 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGAGCACCG
* * * ** * *
24019956 TC-A-GCCGGTCGGAGAGGTAGAATGCACAAGTCGGGGATCGGCCTAG-TCCCCCCTA-GCGTGC
247 TCGAGGCCGGTCAGAGAGGTAGAATACACAAGCCAAGGATCAGCC-AGAT-CCCCCTATGCATGC
24020017 TGTCGATCC
310 TGTCGATCC
24020026 TGTTGCCCAA
Statistics
Matches: 268, Mismatches: 41, Indels: 32
0.79 0.12 0.09
Matches are distributed among these distances:
367 141 0.53
368 26 0.10
370 1 0.00
371 5 0.02
372 3 0.01
374 2 0.01
376 1 0.00
379 3 0.01
380 85 0.32
381 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (360 bp):
TTAGACATGGAATGAACTCCGTATACCTAAGCCAAACCACGAAACGAACGTACGGGTGCTCAACC
AACCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCTACGTGCTGTCGATCCTGC
TGCTACAACCCTAGATTCAGTTCAATCTTAGACTAGGAATGAACTCCGTACGCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGAGCACCGTCGAGGCCGGTCAG
AGAGGTAGAATACACAAGCCAAGGATCAGCCAGATCCCCCTATGCATGCTGTCGATCCCGCTATC
GATCCTGCTGTCATAACCCTCGGTCCGACTGTGGC
Found at i:24020251 original size:159 final size:158
Alignment explanation
Indices: 24019895--24020397 Score: 439
Period size: 158 Copynumber: 3.2 Consensus size: 158
24019885 AACTCCGTAC
* * * *
24019895 GCTTAGACATGGAATGAAGTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTTCGGGCGCTCAG
* * *
24019960 CCGGTCGGAGAGGTAGAATGCACAAGTCGGGGATCGGCCTAGTCCCCCCTAGCGTGCTGTCGATC
66 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTAGTCCCCCCTAGCGTGCTCTCGATC
*** * *
24020025 CTGTTGCCCAACCCTCGGTCTGGTCTGA
131 CCACTGCCCAACCCTCGATCTGGACTGA
* ** * * * *
24020053 TCTTAGAC-TGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAATGAGTGTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTTCGGGCGCTCA
* * ** * *
24020117 GCCGGTCAGAGAGGCATAATGTGCAAGCCGGGGATCGG-CTCGGTCCCCCTCT-GTGTGCTACT-
65 GCCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCT-AGTCCCCC-CTAGCGTGCT-CTC
* *
24020179 GGTCCCACTGCCACAACCCTCGATCT-GACTGGG
127 GATCCCACTGCC-CAACCCTCGATCTGGACT-GA
* *
24020212 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTAT-GGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGT-TCGGGCGCTCA
* * * * * * * *
24020276 GCCGGTCGGAGAGGTAGAATGCGCAATCTGAGGG-TCGGTCTGGTCCCCCCT-GCATGCTGTCGA
65 GCCGGTCGGAGAGGCAGAATGCACAAGCCG-GGGATCGGCCTAGTCCCCCCTAGCGTGCTCTCGA
*** * * **
24020339 TCCTGTTGCCGCAACCCTCGATTTGGTCCAA
129 TCCCACTGCC-CAACCCTCGATCTGGACTGA
* *
24020370 TCTTAGAC-TGGGAATGAACTCCTTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
24020398 TTAGACTGAG
Statistics
Matches: 275, Mismatches: 57, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
157 5 0.02
158 158 0.57
159 105 0.38
160 7 0.03
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTTCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTAGTCCCCCCTAGCGTGCTCTCGATC
CCACTGCCCAACCCTCGATCTGGACTGA
Found at i:24020412 original size:26 final size:26
Alignment explanation
Indices: 24020371--24020423 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24020361 TTGGTCCAAT
*
24020371 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCATATG
24020397 CTTAGACTGAGG-ATGAACTCCATATG
1 CTTAGACTG-GGAATGAACTCCATATG
24020423 C
1 C
24020424 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:24020697 original size:355 final size:362
Alignment explanation
Indices: 24020186--24020853 Score: 832
Period size: 355 Copynumber: 1.9 Consensus size: 362
24020176 ACTGGTCCCA
* * *
24020186 CTGCCACAACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACC
* * * * * * * * * * * * * *
24020251 CATGAAATGGGTGTATGGGCGCTCAGCCGGTCGGAGAGGTAGAATGCGCAATCTGAGGGTCGGTC
66 CATGAAATGAGTGTACGGGCACCCAGCCAGCCGAAGAGGCAAAATACGCAAGCCGAGGATCGGCC
* * * ** **
24020316 TGGTCCCCCCTGCATGCTGTCGAT-C-CTGTT-G-CC-G-C-AACCCTCGATTTGGTCCAATCTT
131 CGATCCCCCCTACATGCTACCGATCCACTGTTGGTCCTGTCAAACCCTCGATCCGGTCCAATCTT
* * *
24020374 AGACTGGGAATGAACTCCTTATGCTTAGAC-TGAGGATGAACTCCATATGCCTAAGTCAACCCAT
196 AGACTGGGAATGAACTCCGTATGCTTAGACATG-GAATGAACTCCATATGCCTAAGCCAACCC-T
* * *
24020438 -GAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGACATAATGCACAAGTCGAGGATCAGCCCG
259 CGAAACGAGCGTGCAGGCGCTCAACCGACCGGAGAGACAAAATGCACAAGTCGAGGATCAGCCCG
24020502 ATCCCCCTCTGCATGCTACCCATCCCGCTGCTGGTCTTG
324 ATCCCCCTCTGCATGCTACCCATCCCGCTGCTGGTCTTG
* ** *
24020541 CTGCCACAACCCTCAATCCGGCTGGGGCTTAGACATGGAATAAACTCGGTATGTCTAAGCCAACC
1 CTGCCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACC
* *
24020606 CATGAAATGAGTGTGCGGGCACCCAGCCAGCCGAAGAGGCAAAATATGCAAGCCGAGGATCGGCC
66 CATGAAATGAGTGTACGGGCACCCAGCCAGCCGAAGAGGCAAAATACGCAAGCCGAGGATCGGCC
*
24020671 CGATCCCCCCTACGTGCTACCGATCCTACTGTTGGTCCTGTTGTCGAAACCCTCGATCCGGTCCA
131 CGATCCCCCCTACATGCTACCGATCC-ACTGTTGGTCC---TGTC-AAACCCTCGATCCGGTCCA
* *
24020736 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
191 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
* * *
24020801 CCTCGAAACGAGCGTTCAGGCGCTCAACCGACCGGAGAGGCAAAATGTACAAG
256 CCTCGAAACGAGCGTGCAGGCGCTCAACCGACCGGAGAGACAAAATGCACAAG
24020854 CTGGGGACCG
Statistics
Matches: 257, Mismatches: 42, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
355 125 0.49
356 1 0.00
358 5 0.02
359 1 0.00
360 2 0.01
364 1 0.00
365 1 0.00
366 1 0.00
367 118 0.46
368 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (362 bp):
CTGCCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACC
CATGAAATGAGTGTACGGGCACCCAGCCAGCCGAAGAGGCAAAATACGCAAGCCGAGGATCGGCC
CGATCCCCCCTACATGCTACCGATCCACTGTTGGTCCTGTCAAACCCTCGATCCGGTCCAATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCTCG
AAACGAGCGTGCAGGCGCTCAACCGACCGGAGAGACAAAATGCACAAGTCGAGGATCAGCCCGAT
CCCCCTCTGCATGCTACCCATCCCGCTGCTGGTCTTG
Found at i:24020776 original size:26 final size:26
Alignment explanation
Indices: 24020738--24020790 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24020728 CCGGTCCAAT
*
24020738 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24020764 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
24020790 C
1 C
24020791 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24021280 original size:26 final size:26
Alignment explanation
Indices: 24021239--24021291 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24021229 CTGATCTGAT
24021239 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
24021265 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCATATG
24021291 C
1 C
24021292 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:24021362 original size:868 final size:861
Alignment explanation
Indices: 24018971--24021362 Score: 2659
Period size: 868 Copynumber: 2.7 Consensus size: 861
24018961 CTACTATCAC
* ** * * *
24018971 AACCCTCGATGCGGTCTGATCTTAAATTGGGAATGAACTCCGTATGCTTAGACATAGAATGAACT
1 AACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
* * * * *
24019036 CCGTATGCCTAAGCCATCCCACGAAACGAGCGTGCGTGCACTCAGCTGATCAGAGAGAGAGAATG
66 CCGTATGCCTAAGCCAACCCTCGAAACGAGCGTGCG-GCGCTCAGCCGATCGGAGAG-GAGAATG
** * * * * * *
24019101 CGTAAGTCAGGGACCAGCCTGATCCCCCT-CTGTGCTGTTGATCCTGCTACCGAAACCCTCATTT
129 CACAAGTCGGGGACCGGCCAGTTCCCCCTGC-GTGCTGTCGATCCTGCTACCGAAACCCTCATTC
*
24019165 CGATCTGAGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAATGAGCGTTCGG
193 CGATCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAATGAGCGTTCGG
* * * * * *
24019230 GCGCTGAGTCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTACGTGT
258 GCACTGAGCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGC
* * * *
24019295 TGCCGGTCCTGCTGCCACAACTCTC-ATTCTGGCTGGGGTTTAGACATGGAATGAACTCCTTATG
323 TGACGGTCCTGCTGCCACAACCCTCGA-TCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATG
* * *** * *
24019359 CCTAAGCCAACCCATGAAACGA-ACGTACGGGTGCTCAACCAACCAGAGAGGCAGAATGCACAAG
387 CCTAAGCCAACCCATGAAACGAGA-GTATGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAG
* * * * * * *
24019423 CCGGGGATCGGCCCGGTCCCCCTACGTGCTGTCGATCCTGCTGCTACAACCCTAGGTTCAGTTTG
451 TCGGGGATCGGCCCGGTCCCCCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCGATTGA-TCTG
* ** * * *
24019488 ATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGGGTGAACTCCGTATGCCTATGTCAAC
515 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAAC
* * * * *
24019553 CCATGGAACGAGCGTGCAGGCATTCAACCTGTCGGAGAGGCCGGTCAGAGAGGTATAATATGCAA
580 CCATGAAACGAGCGTGC-GG-A-T---GC--TC----A-GCCGGCCAGAGA-G-ACAAAATGCAA
* * ** * * *
24019618 GCCAAGGATCAGCCCGATCCCTCTATGCATGCTGTCGATCCCGCTATCGATCCTGCTGTCATAAC
630 GCCGAGGATCAGCCCGATCCCCCTATGCATGCTACCCATCCCGCTATCGATCCTGCTGCCACAAC
** * *
24019683 CCTCGGTCCGACTGTGGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAAACCACGAAACGA
695 CCTCAATCCGACTGGGGCTTAGACATGGAATAAACTCCGTATACCTAAGCCAAACCACGAAACGA
** * * * * *
24019748 GGGTGCGGGTGCTCAACCGACCAGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCCC
760 GGGTGCGGGCACCCAACCGACCAGAGAGGCAAAATATGCAAGCCGAGGATCGACCCGATCCCCCC
* ** * **
24019813 TACGTGTTGTCGATCCCGCTGCTAGTCCTGTTGTCTC
825 TACGTGCTACCGATCCCACTGCTAGTCCTGTTGTCGA
* * * *
24019850 AACCCTCGATTCGGTTCAATCTTAGACTGGGAATGAACTCCGTACGCTTAGACATGGAATGAAGT
1 AACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
*
24019915 CCGTATGCCTAAGCCAACCCAT-GAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGTAGAAT
66 CCGTATGCCTAAGCCAACCC-TCGAAACGAGCGTGC-GGCGCTCAGCCGATCGGAGAGG-AGAAT
* * * * * **
24019979 GCACAAGTCGGGGATCGGCCTAGTCCCCCCTAGCGTGCTGTCGATCCTGTTGCC-CAACCCTCGG
128 GCACAAGTCGGGGACCGGCC-AGTTCCCCCT-GCGTGCTGTCGATCCTGCTACCGAAACCCTCAT
* * * * *
24020043 TCTGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAATGAGTGTTC
191 TCCGATCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAATGAGCGTTC
* * * * *
24020108 GGGCACTGAGCCGGTCAGAGAGGCATAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGTGT
256 GGGCACTGAGCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGT
** *
24020173 GCT-ACTGGTCCCACTGCCACAACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTCCCTA
321 GCTGAC-GGTCCTGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTA
* * * * *
24020237 TGCCTAAGCCAACCCATGAAATGGGTGTATGGGCGCTCAGCCGGTCGGAGAGGTAGAATGCGCAA
385 TGCCTAAGCCAACCCATGAAACGAGAGTATGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAA
* * * * * *
24020302 -TCTGAGGG-TCGGTCTGGTCCCCCCTGCATGCTGTCGATCCTGTTGCCGCAACCCTCGATTTGG
450 GTC-G-GGGATCGGCCCGGT-CCCCCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCGA-TTGA
** * *
24020365 TCCAATCTTAGACTGGGAATGAACTCCTTATGCTTAGACT-GAGGATGAACTCCATATGCCTAAG
511 TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGA-GATGAACTCCGTATGCCTAAG
** * * * *
24020429 TCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGACATAATGCACAAGTCGAGGA
575 TCAACCCATGAAACGAGCGTGCGGATGCTCAGCCGGCCAGAGAGACAAAATG--CAAGCCGAGGA
* * * *
24020494 TCAGCCCGATCCCCCTCTGCATGCTACCCATCCCGCT-GCTGGTCTTGCTGCCACAACCCTCAAT
638 TCAGCCCGATCCCCCTATGCATGCTACCCATCCCGCTATC-GATCCTGCTGCCACAACCCTCAAT
* * ** * * * *
24020558 CCGGCTGGGGCTTAGACATGGAATAAACTCGGTATGTCTAAGCCAACCCATGAAATGAGTGTGCG
702 CCGACTGGGGCTTAGACATGGAATAAACTCCGTATACCTAAGCCAAACCACGAAACGAGGGTGCG
* *
24020623 GGCACCCAGCC-AGCC-GAAGAGGCAAAATATGCAAGCCGAGGATCGGCCCGATCCCCCCTACGT
767 GGCACCCAACCGA-CCAG-AGAGGCAAAATATGCAAGCCGAGGATCGACCCGATCCCCCCTACGT
* * *
24020686 GCTACCGATCCTACTGTTGGTCCTGTTGTCGA
830 GCTACCGATCCCACTGCTAGTCCTGTTGTCGA
*
24020718 AACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACT
1 AACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
* * * *
24020783 CCGTATGCCTAAGCCAACCCTCGAAACGAGCGTTCAGGCGCTCAACCGACCGGAGAGGCAAAATG
66 CCGTATGCCTAAGCCAACCCTCGAAACGAGCGTGC-GGCGCTCAGCCGATCGGAGAGG-AGAATG
* * * * *
24020848 TACAAG-CTGGGGACCGGTGCGGTTCCCCCTGCGTGCTGTCAATCCTGCTACCGTAACCCTCATT
129 CACAAGTC-GGGGACCGG-CCAGTTCCCCCTGCGTGCTGTCGATCCTGCTACCGAAACCCTCATT
** * * * * * *
24020912 CCGATCCAATCTTAGACTGGAAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCCTGCG
192 CCGATCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAATGAGCGTTCG
* * * *
24020977 GGCACTGAGCCGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCTCCTCTGCGTG
257 GGCACTGAGCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTG
* * * * *
24021042 CTGTCGGTCCTGTTGCCACGACCCTCGCTCTGGCTGGGGCTTAAACATGGAATGAACTCCCTATG
322 CTGACGGTCCTGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATG
* * *
24021107 CCTAATCCAACCCATGAAACGAGAGCATGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGT
387 CCTAAGCCAACCCATGAAACGAGAGTATGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGT
* * * *
24021172 CGGGGATCGGCCCGATCCCCCTTGCGTGCTGCCGATCCTACTGTTGCAACCCTCGATCTGATCTG
452 CGGGGATCGGCCCGGTCCCCC-TGCGTGCTGTCGATCCTGCTGCTGCAACCCTCGAT-TGATCTG
24021237 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAAC
515 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAAC
* * * **
24021302 CCATGAAATGAGCGTACGGATGCTCAGCCGACCAGAGAGACAGGATGCGTAAGCCGAGGAT
580 CCATGAAACGAGCGTGCGGATGCTCAGCCGGCCAGAGAGACAAAATGC--AAGCCGAGGAT
24021363 TGAACGGGTG
Statistics
Matches: 1257, Mismatches: 225, Indels: 73
0.81 0.14 0.05
Matches are distributed among these distances:
866 6 0.00
867 34 0.03
868 707 0.56
869 7 0.01
873 2 0.00
875 1 0.00
878 1 0.00
879 126 0.10
880 244 0.19
881 126 0.10
882 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (861 bp):
AACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
CCGTATGCCTAAGCCAACCCTCGAAACGAGCGTGCGGCGCTCAGCCGATCGGAGAGGAGAATGCA
CAAGTCGGGGACCGGCCAGTTCCCCCTGCGTGCTGTCGATCCTGCTACCGAAACCCTCATTCCGA
TCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCA
CTGAGCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGA
CGGTCCTGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
AGCCAACCCATGAAACGAGAGTATGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGTCGGG
GATCGGCCCGGTCCCCCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCGATTGATCTGATCTTA
GACTGGGAATGAACTCCATATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCATGA
AACGAGCGTGCGGATGCTCAGCCGGCCAGAGAGACAAAATGCAAGCCGAGGATCAGCCCGATCCC
CCTATGCATGCTACCCATCCCGCTATCGATCCTGCTGCCACAACCCTCAATCCGACTGGGGCTTA
GACATGGAATAAACTCCGTATACCTAAGCCAAACCACGAAACGAGGGTGCGGGCACCCAACCGAC
CAGAGAGGCAAAATATGCAAGCCGAGGATCGACCCGATCCCCCCTACGTGCTACCGATCCCACTG
CTAGTCCTGTTGTCGA
Found at i:24022058 original size:26 final size:26
Alignment explanation
Indices: 24022029--24022081 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
24022019 CCGGTCTGAT
*
24022029 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATAAACTCCGTATG
* * * *
24022055 CTTAGACTGGGGATAAACTCCTTATG
1 CTTACACTAGGAATAAACTCCGTATG
24022081 C
1 C
24022082 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATAAACTCCGTATG
Found at i:24023354 original size:513 final size:507
Alignment explanation
Indices: 24022392--24023465 Score: 1340
Period size: 513 Copynumber: 2.1 Consensus size: 507
24022382 CCGATCCGAT
* * * * *
24022392 CTTAGAGTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAATGAGCGTTCGGGCACTGAGC
1 CTTAGAGTGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
* ** * *
24022457 CGGTCGGAGACGGATAATGCGTAAGCCAGGGATCGGCCCCCCTTTGTGTGCTACTGATCCCACTA
65 CAGTCGGAGACGGATAATGCACAAGCCAGGGATCGGCCCCCCTCTGCGTGCTACTGATCCCACTA
*
24022522 CCGATCCTGCTGCCACAACCCTCGATCCGGTTGGGGCTTAGACGTGGAATGAACTCCGCATTCCT
130 CCGATCCTGCTGCCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCCGCATTCCT
* * *
24022587 AAGCCAACCCATGAAACGAGCGTACGGGCTCTGAGTCGACCGGAGAGGGAGAATGCACAAGCTGA
195 AAGCCAACCCATGAAACGAGCGTACGGGCTCTGAGTAGACCAGAGAGGCAGAATGCACAAGCTGA
* * * * *
24022652 GGATCGACCCGGTCCCCCTCTGCATGCTGCTAGTCCCGCTGCCACAACCCTCGATTCGGCTGGGG
260 GGATCGACCCGGCCCCCCTCTGCATGCTGCTAGTACCACTGCCACAACCCTCGATTCGACTAGGG
* * * *
24022717 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACTAAACGGGCGTGCGGGTGTTTAAC
325 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACTAAACGAGCGTGCGGGTGCTCAAC
* ** * * *
24022782 CGACTGGAGTGGCAAAATGCGTAGTCGGGGATCGACCCGATCCCTCCTGTATGCTACCGATCCTG
390 CGACTGGAGAGGCAAAATGCCAAGTCAGGGATCGACCCGATCCCCCCTGCATGCTACCGATCCTG
* * * * * *
24022847 CTGTCGCAACTCTCGGTCCAGTTCGATCTTAGACTAGGAATGAACTCCGTATG
455 CTGTCGCAACCCTCGATCCAGTCCAACCTTAGACTAGGAATGAACTCCATATG
*
24022900 CTTAGAGTGAGGATGAACACCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
1 CTTAGAGTG-GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
* **
24022965 CAGTCGGAGA-GGCATAATGCACAAGCCAGGGATCAGCTCGGTCCCCCTCTGCGTGCTGTTGATC
65 CAGTCGGAGACGG-ATAATGCACAAGCCAGGG---A--TCGGCCCCCCTCTGCGTGCTACTGATC
* * *
24023029 CCGCT-CCTGGTCCTGCTGCCATAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCCG
124 CCACTACC-GATCCTGCTGCCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCCG
* * * *
24023093 TATTCCTAAGCCAACCCATGAAATGAGCGTTCGGGCTCTGAGCTAG-CCAGAGAGGCAGAATGCG
188 CATTCCTAAGCCAACCCATGAAACGAGCGTACGGGCTCTGAG-TAGACCAGAGAGGCAGAATGCA
* * ** * *
24023157 CAAG-TCGGGGATCG-CCCGGCCCCCCTTTGTGTGCTG-TCGGTATCACTGCCACAACCCTC--T
252 CAAGCT-GAGGATCGACCCGGCCCCCCTCTGCATGCTGCT-AGTACCACTGCCACAACCCTCGAT
*
24023217 GTCTGACTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCA-TGAAACGAGTGT
315 -TC-GACTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACT-AAACGAGCGT
* * * * *
24023281 GCGGGTGCTCAACCG-GTCGGGGAGGCAGAATGCACAAGTCAGGGATCGGCCCGGTCCCCCCTGC
377 GCGGGTGCTCAACCGACT-GGAGAGGCAAAATGC-CAAGTCAGGGATCGACCCGATCCCCCCTGC
* * * *
24023345 GTGCTACCGATCTTGCTGTCGCAACCCTCGATCCCGTCCAACCTTAGACTGGGAATGAACTCCAT
440 ATGCTACCGATCCTGCTGTCGCAACCCTCGATCCAGTCCAACCTTAGACTAGGAATGAACTCCAT
24023410 ATG
505 ATG
* *
24023413 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTG
1 CTTAGAGT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
24023466 TGGACGCTCA
Statistics
Matches: 484, Mismatches: 65, Indels: 29
0.84 0.11 0.05
Matches are distributed among these distances:
507 2 0.00
508 81 0.17
509 2 0.00
510 1 0.00
511 6 0.01
512 116 0.24
513 273 0.56
514 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (507 bp):
CTTAGAGTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACC
AGTCGGAGACGGATAATGCACAAGCCAGGGATCGGCCCCCCTCTGCGTGCTACTGATCCCACTAC
CGATCCTGCTGCCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCCGCATTCCTA
AGCCAACCCATGAAACGAGCGTACGGGCTCTGAGTAGACCAGAGAGGCAGAATGCACAAGCTGAG
GATCGACCCGGCCCCCCTCTGCATGCTGCTAGTACCACTGCCACAACCCTCGATTCGACTAGGGC
TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACTAAACGAGCGTGCGGGTGCTCAACC
GACTGGAGAGGCAAAATGCCAAGTCAGGGATCGACCCGATCCCCCCTGCATGCTACCGATCCTGC
TGTCGCAACCCTCGATCCAGTCCAACCTTAGACTAGGAATGAACTCCATATG
Found at i:24023373 original size:158 final size:157
Alignment explanation
Indices: 24023068--24023355 Score: 364
Period size: 158 Copynumber: 1.8 Consensus size: 157
24023058 GATCCGGTTG
* * * * *
24023068 GGGCTTAGACATGGAATGAACTCCGTATTCCTAAGCCAACCCATGAAATGAGCGTTCGGGCTCTG
1 GGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCTCTC
* * * * * ** *
24023133 AGCTAGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGCCCGGCCCCCCTTTGTGTGCTGTCGGT
66 AACCAGCCAGAGAGGCAGAATGCACAAGTCAGGGATCGCCCGGCCCCCC-TTGCGTGCTACCGAT
24023198 ATCACTGCCACAACCCTCTGTCTGACTA
130 ATCACTGCCACAACCCTCTGTCTGACTA
*
24023226 GGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGTGTGCGGG-TGCT
1 GGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCT-CT
* * * *
24023290 CAACCGGTCGGGGAGGCAGAATGCACAAGTCAGGGATCGGCCCGGTCCCCCC-TGCGTGCTACCG
65 CAACCAGCCAGAGAGGCAGAATGCACAAGTCAGGGATC-GCCCGG-CCCCCCTTGCGTGCTACCG
24023354 AT
128 AT
24023356 CTTGCTGTCG
Statistics
Matches: 109, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
157 1 0.01
158 96 0.88
159 6 0.06
160 6 0.06
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (157 bp):
GGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCTCTC
AACCAGCCAGAGAGGCAGAATGCACAAGTCAGGGATCGCCCGGCCCCCCTTGCGTGCTACCGATA
TCACTGCCACAACCCTCTGTCTGACTA
Found at i:24023416 original size:26 final size:26
Alignment explanation
Indices: 24023387--24023439 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24023377 CCCGTCCAAC
24023387 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
24023413 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
24023439 C
1 C
24023440 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:24024150 original size:26 final size:26
Alignment explanation
Indices: 24024120--24024172 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24024110 GGCATAAACT
24024120 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
24024146 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
24024172 C
1 C
24024173 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:24024525 original size:26 final size:26
Alignment explanation
Indices: 24024489--24024541 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24024479 TCGGTTTGAT
24024489 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
24024515 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
24024541 C
1 C
24024542 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:24025257 original size:26 final size:26
Alignment explanation
Indices: 24025228--24025280 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24025218 GTTGACTTAG
24025228 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
24025254 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24025280 G
1 G
24025281 ATCGGACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24025553 original size:13 final size:13
Alignment explanation
Indices: 24025532--24025572 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
24025522 TACACATTAT
*
24025532 GCCTTTCCGACAG
1 GCCTCTCCGACAG
*
24025545 GCCTCTCCGGCAG
1 GCCTCTCCGACAG
*
24025558 GCTTCTCCGACAG
1 GCCTCTCCGACAG
24025571 GC
1 GC
24025573 TGAGTGCCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.12, C:0.41, G:0.27, T:0.20
Consensus pattern (13 bp):
GCCTCTCCGACAG
Found at i:24025573 original size:13 final size:13
Alignment explanation
Indices: 24025537--24025573 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
24025527 ATTATGCCTT
*
24025537 TCCGACAGGCCTC
1 TCCGACAGGCTTC
*
24025550 TCCGGCAGGCTTC
1 TCCGACAGGCTTC
24025563 TCCGACAGGCT
1 TCCGACAGGCT
24025574 GAGTGCCCAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.14, C:0.41, G:0.27, T:0.19
Consensus pattern (13 bp):
TCCGACAGGCTTC
Found at i:24025645 original size:26 final size:26
Alignment explanation
Indices: 24025609--24025661 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24025599 GTTGACTTAG
24025609 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24025635 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24025661 G
1 G
24025662 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24025982 original size:26 final size:26
Alignment explanation
Indices: 24025952--24026004 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24025942 GTTGACTTAG
24025952 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24025978 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24026004 G
1 G
24026005 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24026242 original size:336 final size:336
Alignment explanation
Indices: 24025586--24026314 Score: 820
Period size: 336 Copynumber: 2.1 Consensus size: 336
24025576 GTGCCCACAT
*
24025586 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* * * * * * *
24025651 CCTAGTCTAAGATCAAACCGGATCGAGGGTTGTGACGGTAGGATCGACAGCACGCAGGGGGGATC
66 CCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCAGGACCGACAGCACACAGGGGGGATC
** * *
24025716 GAGTCGATCCCCAACTTGTGCATTCTGCCTCTCCAGCTGGCTGAGCGCCCGCACGTACGTTCCGT
131 GAGTCGAT------CTTACGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCACGTTCCGT
* * * *
24025781 GGGTTGGCGTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCTAATCGGACCGAGGGTTGTGGTA
190 GGGTTGGCGTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCA
* * * * * *
24025846 GCGGGACCAGCAGTACGTAGAGAGGGATAGGGCCGATACTCGACTTACGCATTGTGCCTC-TCTG
255 GCGGGACCAGCAGCACG-ACAGAGGGACAGGGCCAATACCCGACTTACGCATTATGCCTCTTC-G
* *
24025910 GCCGGCAGAGCGCCCGCAC
318 GCCGGCACAACGCCCGCAC
* * *
24025929 GCTCCTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACTGAGTTCATT
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
*** * * * *
24025994 CCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGATAGCAGGACC-AGCAGCACACATGGGTGAT
66 CCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCAGGACCGA-CAGCACACAGGGGGGAT
* * * * *
24026058 CGGGTCGAT-TTACGCATTCTGCCTCT-CTGACCGGCTGAGCGCCCGTACGCCCGTTTCGTGGGT
130 CGAGTCGATCTTACGCATTCTGCCTCTCCAG-CCGGCTGAGCGCCCGCACGCACGTTCCGTGGGT
* * *
24026121 TGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCATCGG
194 TGGCGTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCGG
* * * * * * * *
24026186 GATCGGTAGCAC-ACAGAGGAAGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGGTCG
259 GACCAGCAGCACGACAGAGG--GACAGGGCCAATACCCGACTTACGCATTATGCCTCTTCGGCCG
*
24026250 GCTCAACGCCCGCAC
322 GCACAACGCCCGCAC
* * * *
24026265 GCTCATTTTGTGGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAG
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
24026315 ATCAGACCGG
Statistics
Matches: 325, Mismatches: 56, Indels: 17
0.82 0.14 0.04
Matches are distributed among these distances:
334 6 0.02
335 2 0.01
336 196 0.60
337 2 0.01
342 1 0.00
343 118 0.36
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (336 bp):
GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCAGGACCGACAGCACACAGGGGGGATC
GAGTCGATCTTACGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCACGTTCCGTGGGTTG
GCGTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCGGGA
CCAGCAGCACGACAGAGGGACAGGGCCAATACCCGACTTACGCATTATGCCTCTTCGGCCGGCAC
AACGCCCGCAC
Found at i:24026451 original size:157 final size:159
Alignment explanation
Indices: 24026070--24026473 Score: 431
Period size: 159 Copynumber: 2.6 Consensus size: 159
24026060 GGTCGATTTA
* * * * *
24026070 CGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
1 CGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAT
* * * **
24026135 GGAGCTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCATCGGGATCGGTAGCACAC
66 GGAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGGTTGTGGCATCAGGATCGACAGCACAC
*
24026200 AGAGGAAGACCGGGCCAATCCCCGGCTTG
131 AGAGGAAGACCAGGCCAATCCCCGGCTTG
* * ** * * * * *
24026229 CGCATTATGCCTCTTCGGTCGGCTCAACGCCCGCACGCTCATTTTGTGGGTTGACTTATGCATAT
1 CGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAT
* * * **
24026294 GGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGTGTTAGT-AGGATCGACAGCA
66 GGAGTTCATT-CCATGTCTAAGCACCAG-CCAGACCGAGGGTTGTGGCA-TCAGGATCGACAGCA
** ** * *
24026356 CGTAG-GGGGGA-CAGGCCGATCCTCGGCTTG
128 CACAGAGGAAGACCAGGCCAATCCCCGGCTTG
* * * *
24026386 CGCATTCTGCCTCTCCAACCGACTGAGCGCCCGCACGCTCGTTTTGTGAGTTGGCTTAGGTATAT
1 CGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAT
24026451 GGAGTTCATTCCATGTCTAAGCA
66 GGAGTTCATTCCATGTCTAAGCA
24026474 TACGGAGCTC
Statistics
Matches: 196, Mismatches: 44, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
156 3 0.02
157 85 0.43
158 8 0.04
159 96 0.49
160 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.25
Consensus pattern (159 bp):
CGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAT
GGAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGGTTGTGGCATCAGGATCGACAGCACAC
AGAGGAAGACCAGGCCAATCCCCGGCTTG
Found at i:24028607 original size:158 final size:157
Alignment explanation
Indices: 24028327--24028675 Score: 450
Period size: 158 Copynumber: 2.2 Consensus size: 157
24028317 TAAGATCAGA
* * * * * * *
24028327 CCGGATCGAGGGTTGTGACAGCAGGATCGACAGCACGTAGGGGGATCGGGTCGATCTCTGGCTTG
1 CCGGACCGAGGGTTGTGGCAACAGGATCGACAGCACGTAGGGGGACCGGGCCGATCTCTGACCTG
* * * * *
24028392 CGCATTCTGCCTTTCCGACTGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAT
66 CACATTCTGCCTCTCCGACTAGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAC
*
24028457 AGAGTACATTCCACG-TCTAGGCCCCAG
131 AGAGTACATTCCACGAT-TAAGCCCCAG
* * *
24028484 CCGGACCGAGGGTTGTGGCAACAAGATCGGCAGCACGTTGGAGGGACCGGGCCGATC-CTCGACC
1 CCGGACCGAGGGTTGTGGCAACAGGATCGACAGCACGTAGG-GGGACCGGGCCGATCTCT-GACC
* *
24028548 TGCACATTCTGCCTCTCCGACTAGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
64 TGCACATTCTGCCTCTCCGACTAGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
* *
24028613 ACGGAGTACATTCCATGATTAAGCCCCAG
129 ACAGAGTACATTCCACGATTAAGCCCCAG
* * *
24028642 TCGAACTGAGGGTTGTGGCAACAGGATCGACAGC
1 CCGGACCGAGGGTTGTGGCAACAGGATCGACAGC
24028676 GGGATCGACA
Statistics
Matches: 164, Mismatches: 25, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
157 37 0.23
158 126 0.77
159 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.22
Consensus pattern (157 bp):
CCGGACCGAGGGTTGTGGCAACAGGATCGACAGCACGTAGGGGGACCGGGCCGATCTCTGACCTG
CACATTCTGCCTCTCCGACTAGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAC
AGAGTACATTCCACGATTAAGCCCCAG
Found at i:24028823 original size:26 final size:26
Alignment explanation
Indices: 24028793--24028845 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24028783 GTTGGCTTAG
*
24028793 GCATACGGTGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24028819 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24028845 G
1 G
24028846 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24029365 original size:26 final size:26
Alignment explanation
Indices: 24029335--24029387 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24029325 GTTGACTTAG
24029335 GCATACGCAATTCATCCCCAGTCTAA
1 GCATACGCAATTCATCCCCAGTCTAA
* * *
24029361 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGCAATTCATCCCCAGTCTAA
24029387 G
1 G
24029388 ATCGGATTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGCAATTCATCCCCAGTCTAA
Found at i:24029693 original size:159 final size:157
Alignment explanation
Indices: 24029361--24029694 Score: 366
Period size: 157 Copynumber: 2.1 Consensus size: 157
24029351 CCCAGTCTAA
* * * *
24029361 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTAGATCGAGGGTTCCAGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGATCGAGGGTTCCAGCAGCAGGATCGACA
* * * ** *
24029426 GCACGTAGGGGGGGCCAGGCCGATCCCCGGCTTGCGCATATGCCTCTTTGGCCGGCTAAACGCCC
66 GCACGAAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATATGCCTCTCCGACCGGCTAAACGCCC
* * *
24029491 GCACAATCGTTTCGTGGGTTGACATAT
131 ACACAATCATTTCGTGGGTTGACATAG
* * *
24029518 GCATACTGAGTTCATTCCCAATCTAAGATCAGA-CAGGA-CTGAGGGTTGCAGTAGCAGGATCGA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCA-GATC-GAGGGTTCCAGCAGCAGGATCGA
* * ** * * *
24029581 CAGCACGCAATGGGGGACCGGGTTGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
64 CAGCACG-AAGGGGGGACCAGGCCGATCCCCAGCTTGCGCA-TATGCCTCTCCGACCGGCTAAAC
** * * *
24029646 GCCCACACGCTTATTTCGTGGGTTGGCTTAG
127 GCCCACACAATCATTTCGTGGGTTGACATAG
24029677 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
24029695 ATGTCTAAGC
Statistics
Matches: 144, Mismatches: 29, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
156 2 0.01
157 59 0.41
158 26 0.18
159 57 0.40
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGATCGAGGGTTCCAGCAGCAGGATCGACA
GCACGAAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATATGCCTCTCCGACCGGCTAAACGCCC
ACACAATCATTTCGTGGGTTGACATAG
Found at i:24029702 original size:159 final size:157
Alignment explanation
Indices: 24029361--24029703 Score: 368
Period size: 159 Copynumber: 2.2 Consensus size: 157
24029351 CCCAGTCTAA
* * *
24029361 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTAGATCGAGGGTTCCAGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTCCAGCAGCAGGATCGACA
* * * ** *
24029426 GCACGTAGGGGGGGCCAGGCCGATCCCCGGCTTGCGCATATGCCTCTTTGGCCGGCTAAACGCCC
66 GCACGAAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATATGCCTCTCCGACCGGCTAAACGCCC
* * *
24029491 GCACAATCGTTTCGTGGGTTGACATAT
131 ACACAATCATTTCGTGGGTTGACATAG
* * * *
24029518 GCATACTGAGTTCATTCCCAATCTAAGATCAGA-CAGGA-CTGAGGGTTGCAGTAGCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCA-GATC-GAGGGTTCCAGCAGCAGGATCGA
* * ** * * *
24029581 CAGCACGCAATGGGGGACCGGGTTGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
64 CAGCACG-AAGGGGGGACCAGGCCGATCCCCAGCTTGCGCA-TATGCCTCTCCGACCGGCTAAAC
** * * *
24029646 GCCCACACGCTTATTTCGTGGGTTGGCTTAG
127 GCCCACACAATCATTTCGTGGGTTGACATAG
24029677 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
24029704 CATACAGAGC
Statistics
Matches: 151, Mismatches: 30, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
156 2 0.01
157 59 0.39
158 29 0.19
159 61 0.40
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTCCAGCAGCAGGATCGACA
GCACGAAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATATGCCTCTCCGACCGGCTAAACGCCC
ACACAATCATTTCGTGGGTTGACATAG
Found at i:24030439 original size:26 final size:26
Alignment explanation
Indices: 24030399--24030451 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24030389 GTTGACTTAG
24030399 GCATACAGAGATCATCCCCAGTCTAA
1 GCATACAGAGATCATCCCCAGTCTAA
* * *
24030425 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGATCATCCCCAGTCTAA
24030451 G
1 G
24030452 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGATCATCCCCAGTCTAA
Found at i:24030794 original size:26 final size:25
Alignment explanation
Indices: 24030764--24030824 Score: 81
Period size: 25 Copynumber: 2.4 Consensus size: 25
24030754 TGGGTTGACT
24030764 TAAGCATACAGAGTTCATT-CCTAGTC
1 TAAGCAT-CAGAGTTCATTGCC-AGTC
*
24030790 TAAGCATCGGAGTTCATTGCCAGTC
1 TAAGCATCAGAGTTCATTGCCAGTC
24030815 TAAG-ATCAGA
1 TAAGCATCAGA
24030825 CCGGATTGAG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 5 0.16
25 18 0.56
26 9 0.28
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (25 bp):
TAAGCATCAGAGTTCATTGCCAGTC
Found at i:24031037 original size:367 final size:368
Alignment explanation
Indices: 24030349--24031378 Score: 1180
Period size: 367 Copynumber: 2.8 Consensus size: 368
24030339 ATGCATCCTG
* * * * *
24030349 CCTCTCTGGTCGGT-TGAGCGCCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGATCA
1 CCTCTCCGGTCGGTCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA
* ** * *
24030413 TCCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGACA
66 TCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACA
* *
24030478 GCAGGATCGGTAGCACGCAAGGGGGATCGAGCTGATCCCTGGCTTACGCATTCTGCCTCTTCGAT
131 GCAGGATCGGTAGCACGCAAGGGGGATCGGGC-GATCCCTGGCTTGCGCATTCTGCCTCTTCGAT
* ** * * *
24030543 CGGCTAAGTGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTA
195 CGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTA
** * * * **
24030608 AGCCCCAACCGGACTGAGGGTTATGGCAGTAAGACTGGTAACAAGATCTGCAGCACGTAGAGGGG
260 AGCCCCAGTCGGACCGAGGGTTGTGGCAGTAAGACCGGTAACAAGATCAACAGCACGTAGAGGGG
* *
24030673 GACCAGGCTGAT-CTTCGGCTTGCACATTATGCCTCTCCGACCGA
325 GACCAGGCTGATCCTT-GACCTGCACATTATGCCTCTCCGACCGA
*
24030717 CCTCTCCGGTC-GTCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACAGAGTTCA
1 CCTCTCCGGTCGGTCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA
* * *
24030781 TTCCTAGTCTAAGCAT-CGGAGTTCATTGCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGACA
66 TCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACA
* * * ** * ** * *
24030845 GCAGGATCGGTAGCACACAGGGGGGACCGGGTCGATCCCCAGCCTGCGCATTCAACCTCTCCGGT
131 GCAGGATCGGTAGCACGCAAGGGGGATCGGG-CGATCCCTGGCTTGCGCATTCTGCCTCTTCGAT
* * **
24030910 CGGTTGAGCACCCGCACGTTCGTTTTTTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTA
195 CGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTA
* **
24030975 AGCCCCAGTCGGACCGAGGGTTGTGGCAG-AAGGACCGGTAGCGGGATCAACAGCACGTAGAGGG
260 AGCCCCAGTCGGACCGAGGGTTGTGGCAGTAA-GACCGGTAACAAGATCAACAGCACGTAGAGGG
* * * *
24031039 GGACCAGGCTGATCCTTGACCTGCGCATTATGCCTTTTCGATCGA
324 GGACCAGGCTGATCCTTGACCTGCACATTATGCCTCTCCGACCGA
* * * * * *
24031084 CCTCTCC-GACTGACTGAGC-CCTCGCATGCTTGTTTTATGGGTTGACTTAGGCATAC-GCAGTT
1 CCTCTCCGGTCGGTCTGAGCGCC-CGCACGCTCGTTTCATGGGTTGACTTAGGCATACAG-AGTT
* * * * * * *
24031146 CATCCCTATTCTAAGCGTACGGAGTTCATTCCCAGTCTAGGATCGGATCC-AACCGAAGGTTGCG
64 CATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGGATCGAGGGTTGCG
** * * * * * * *
24031210 GTAGTAGGATCGATAGCTCGTAAGGGGGATCGGGCCATCCCTGGCTTGCGCATTCTGTCTCTTCA
128 ACAGCAGGATCGGTAGCACGCAAGGGGGATCGGGCGATCCCTGGCTTGCGCATTCTGCCTCTTCG
* * * * *
24031275 ATCGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAAGCATAGGGAGCT-CATTCCATGT
193 ATCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG-TACATTCCATGT
* * *
24031339 CTAAGCCCCAGTCGGATCGAGGGTTGTGGAAGCAAGACCG
257 CTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTAAGACCG
24031379 ACAGTACGCA
Statistics
Matches: 554, Mismatches: 97, Indels: 23
0.82 0.14 0.03
Matches are distributed among these distances:
366 7 0.01
367 409 0.74
368 136 0.25
369 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (368 bp):
CCTCTCCGGTCGGTCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA
TCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACA
GCAGGATCGGTAGCACGCAAGGGGGATCGGGCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATC
GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAA
GCCCCAGTCGGACCGAGGGTTGTGGCAGTAAGACCGGTAACAAGATCAACAGCACGTAGAGGGGG
ACCAGGCTGATCCTTGACCTGCACATTATGCCTCTCCGACCGA
Found at i:24031997 original size:494 final size:492
Alignment explanation
Indices: 24031287--24032251 Score: 1278
Period size: 494 Copynumber: 2.0 Consensus size: 492
24031277 CGACTGAGCA
*
24031287 CCCGCACGCCCGTTTCGTGGGTTGGCTTAAGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGTC
1 CCCGCACGCCCGTTTCGTGGGTTGGCTTAAGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCC
* *
24031352 GGATCGAGGGTTGTGGAAGCAAGACCGACAGTACGCAGAAGGGGACCGGGCTGATCCCTGACTTG
66 GGATCGAGGGTTGTGGAAGCAAGACCGACAGTACGCAGAAGGGGACAGGGCTGATCCCGGACTTG
* * *
24031417 CACATTATGCCTCTTCGCTCGGTTCAGCCCCTGCATGCTCATTTCATGGGTTGACTTATGCATAC
131 CACATTATGCCTCTTCGCTCGGCTCAACCCCTGCA-GCTCATTTCATGGGTTGACATATGCATAC
* * * * *
24031482 GGAGTTCATTCCCAATCTAAGATTGGACCGGACCGAGGGTTACGGCAGTAGGATCGACAGCACGT
195 GGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAAGGTTACAGCAGCAGGATCAACAGCACGT
* * * * * * * ** *
24031547 AGGGGGGATCGAGTCGATCCCTAGCTTGCACATTTTGCCTCTCCGATCGGCTGAGTGCCCATACG
260 AGGGGGGACCGAGTCGATCCCCAGCTTGCACATTCTACATCACCGATCGGATGAGCACCCACACG
24031612 CT-AGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGCTCATT
325 CTCA-TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGCTCATT
* * *
24031676 CCCAATCTAAGATTTTGAGCCACGGTGCACATGATGGGCTTGGGCATGTGCTGGTGCCATAGGTT
389 CCCAATCTAAGATTTTGAGCCACGATGCACATGATGAGCTCGGGCATGTGCTGGTGCCATA-GTT
24031741 TTTTCACCCGAGGCACCATCGCCGAAGCATCGTCGGAGTG
453 TTTTCACCCGAGGCACCATCGCCGAAGCATCGTCGGAGTG
* *
24031781 CCCGCACGTCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCC
1 CCCGCACGCCCGTTTCGTGGGTTGGCTTAAGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCC
* ** * * * *
24031846 GGA-CTGAGGGTTGTGGCAGCGGGACTGGCAGTACGCAGAGGGGGATCAGGTC-GATCCCCGGA-
66 GGATC-GAGGGTTGTGGAAGCAAGACCGACAGTACGCAGAAGGGGA-CAGGGCTGAT-CCCGGAC
** * * * *
24031908 TTGCGTATTATGTCTCTTTGGC-CGGCTCAACGCCC-GCA-CATTAGTTTCGTGGGTTGACATAT
128 TTGCACATTATGCCTC-TTCGCTCGGCTCAAC-CCCTGCAGC-TCA-TTTCATGGGTTGACATAT
* * * *
24031970 GCATACGGAGTTCATTCCCACTCTAAGATCGGATCGGACTGAAGGTTGCAGCAGCAGGATCAACA
189 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAAGGTTACAGCAGCAGGATCAACA
* * * ** * *
24032035 GCATGTAGGGGGGACCGGGTCGATCCCCGGCTTGCTTATTCTACATCACTGGTCGGATGAGCACC
254 GCACGTAGGGGGGACCGAGTCGATCCCCAGCTTGCACATTCTACATCACCGATCGGATGAGCACC
* *
24032100 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGC
319 CACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGC
* *
24032165 TCATTCCCAATCTAAGATTTTGAGCCACGATGCACATGCTGAGCTCGGGCATGTGCTGGTGCCGT
384 TCATTCCCAATCTAAGATTTTGAGCCACGATGCACATGATGAGCTCGGGCATGTGCTGGTGCCAT
* * *
24032230 ATTTTTTTCACTCGGGGCACCA
449 AGTTTTTTCACCCGAGGCACCA
24032252 CCACCAGAGC
Statistics
Matches: 406, Mismatches: 57, Indels: 17
0.85 0.12 0.04
Matches are distributed among these distances:
492 1 0.00
493 21 0.05
494 367 0.90
495 17 0.04
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (492 bp):
CCCGCACGCCCGTTTCGTGGGTTGGCTTAAGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCC
GGATCGAGGGTTGTGGAAGCAAGACCGACAGTACGCAGAAGGGGACAGGGCTGATCCCGGACTTG
CACATTATGCCTCTTCGCTCGGCTCAACCCCTGCAGCTCATTTCATGGGTTGACATATGCATACG
GAGTTCATTCCCAATCTAAGATCGGACCGGACCGAAGGTTACAGCAGCAGGATCAACAGCACGTA
GGGGGGACCGAGTCGATCCCCAGCTTGCACATTCTACATCACCGATCGGATGAGCACCCACACGC
TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGCTCATTCC
CAATCTAAGATTTTGAGCCACGATGCACATGATGAGCTCGGGCATGTGCTGGTGCCATAGTTTTT
TCACCCGAGGCACCATCGCCGAAGCATCGTCGGAGTG
Found at i:24032178 original size:26 final size:26
Alignment explanation
Indices: 24032128--24032180 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24032118 GTTGGCTTAG
* *
24032128 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24032154 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24032180 G
1 G
24032181 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24033257 original size:26 final size:26
Alignment explanation
Indices: 24033228--24033280 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24033218 GTTGACCTAG
*
24033228 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24033254 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24033280 G
1 G
24033281 ATTGAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24033512 original size:366 final size:367
Alignment explanation
Indices: 24032847--24033845 Score: 1078
Period size: 367 Copynumber: 2.7 Consensus size: 367
24032837 CGCCCGTTGC
* * *
24032847 GTGGGTTGACTTAGGCATACTGAGTTCATCCCCAGTCTAAGCATATAGAGTTCATTCTCAATCTA
1 GTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTA
* * * * * * * *
24032912 AGA-TCAGACC-GAATCGAGGGTTACGATAGTAGGATCAATAGTACGTAGGGGGGACTGGTCCGA
66 AGATTGA-ACCAG-ATCGAGGGTTGCGACAGTAGGATCGACAGCACGTA-GGGGGACCGG-CCCA
* * * * * * *
24032975 T-CCTCGACCTGCGCATTCTGCCTCTCCGACCGGCTAAGCACCTGCATGCTTGTTTCGTGGGTTG
127 TCCCT-GACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * * *
24033039 GCTTAGGCATATGGAGTACATTCCACGTCTAAGCCCCAGCCTGACCAAGGGTTGTGGCAGCAAGA
191 GCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGACGGACCGAGGGTTGTGGCAGCAGGA
* * * * *
24033104 -CTAGCAGCTAGATCAGTAGCACATAGAGAGGGATCGGGCTGAT-CCTCGGCTTGCACATTATGC
256 CCGAGCAGCGAGATCAGTAGCACACAGAGAGGGATCAGGCTGATCCCT-GACTTGCACATTATGC
* * *
24033167 CTC-TCCGTTG-GCCTCTACGACT-GGCTGAGCACCCGTACGCTCATTTT
320 CTCTTCCGTCGAG-CTCTACG-CTAGGCTGAGCACCCGCACACTCATTTT
* * * *
24033214 GTGGGTTGACCTAGGCATACGGAGTTCATCCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTA
1 GTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTA
* * *
24033279 AGATTGAACTAGATCGAGGGTTGCGACAGCAGGATCGACAACACGTAGGGGGACCGAGCCCATCC
66 AGATTGAACCAGATCGAGGGTTGCGACAGTAGGATCGACAGCACGTAGGGGGACCG-GCCCATCC
* * *
24033344 CTGGCTTGGGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
130 CTGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
* * *
24033409 AGGCATACGAAGTACATTCCACGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGCAGCAGGACCGA
195 AGGCATACGGAGTACATTCCACGTCTAAGCCCCAGACGGACCGAGGGTTGTGGCAGCAGGACCGA
* * *
24033474 -TAGCGAGATC-GATAGCACGCAGATG-GGGA-CTAGGCTGATCCCTGACTTGCATATTATGCCT
260 GCAGCGAGATCAG-TAGCACACAGA-GAGGGATC-AGGCTGATCCCTGACTTGCACATTATGCCT
* * ** * * **
24033535 CTTCGGTCGAGCTTTTTGGTAGGCTGAGCGCTTGCACACTCATTTT
322 CTTCCGTCGAGCTCTACGCTAGGCTGAGCACCCGCACACTCATTTT
*
24033581 GTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTA
1 GTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTA
* * * * *
24033646 AGA-TCAGACCAGA-CTGAGGGTTGTGACAGTAGGATCGGCAGCACGCAGAGGGGACCTGGCCTA
66 AGATTGA-ACCAGATC-GAGGGTTGCGACAGTAGGATCGACAGCACGTAG-GGGGACC-GGCCCA
* * * *
24033709 TCCCTGACTTGCGCATTCTGCCTCTTCGGTTGGCTGAGCGCCCGCACG-TCCGTTTAGTGGGTTG
127 TCCCTGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCT-CGTTTCGTGGGTTG
* * * * * *
24033773 GCTTAGGCATAGGGAGCT-CAATCCATGTCTAAGCCCCAAACGGACCGATGGTTGTGGCAGCGGG
191 GCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCCCAGACGGACCGAGGGTTGTGGCAGCAGG
24033837 ACCGA-CAGC
255 ACCGAGCAGC
24033846 ACGCAGAGGG
Statistics
Matches: 530, Mismatches: 84, Indels: 35
0.82 0.13 0.05
Matches are distributed among these distances:
365 2 0.00
366 168 0.32
367 227 0.43
368 131 0.25
369 2 0.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (367 bp):
GTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTA
AGATTGAACCAGATCGAGGGTTGCGACAGTAGGATCGACAGCACGTAGGGGGACCGGCCCATCCC
TGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
GGCATACGGAGTACATTCCACGTCTAAGCCCCAGACGGACCGAGGGTTGTGGCAGCAGGACCGAG
CAGCGAGATCAGTAGCACACAGAGAGGGATCAGGCTGATCCCTGACTTGCACATTATGCCTCTTC
CGTCGAGCTCTACGCTAGGCTGAGCACCCGCACACTCATTTT
Found at i:24033632 original size:26 final size:26
Alignment explanation
Indices: 24033595--24033647 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24033585 GTTGACTTAG
*
24033595 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
24033621 GCATAC-AGAGTTCATTCCCAATCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
24033647 G
1 G
24033648 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:24034080 original size:157 final size:158
Alignment explanation
Indices: 24033621--24034121 Score: 512
Period size: 157 Copynumber: 3.2 Consensus size: 158
24033611 CCCAGTCTAA
* * * * * *
24033621 GCATACAGAGTTCATTCCCA-ATCTAAGATCAGACCAGACTGAGGGTTGTGACAGTAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
24033685 AGCACGCAGAGGGGACCT-GGCCTATCCCTGACTTGCGCATTCTGCCTCTTCGGTTGGCTGAGCG
65 AGCACGCAGGGGGGA-CTGGGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGGCTGAGCG
*
24033749 CCCGCACG-TCCGTTTAGTGGGTTGGCTTAG
129 CCCGCACGCT-CGTTTCGTGGGTTGGCTTAG
* * * ** * * * * *
24033779 GCATAGGGAGCTCAATCCATGTCTAAGCCCCA-AACGGACCGATGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
24033843 AGCACGCAGAGGGGGA-TAGGGTCGATCCCCAGCTTACGCATTATGCCTCTTCGGCCGGCTCAAC
65 AGCACGCAG-GGGGGACT-GGGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGGCTGAGC
* * * *
24033907 GCCTGCACACTCGTTTCGTGGGTTGACTTAT
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
24033938 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCAAACCGA-GGTTGCGGCAGCAGGATCAACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * *
24034002 GCATGTAGGGGGGACTGGGTCGATCCCCGGCTTACGCATTCTGCCT-TTCCGGTCGACTGAGCGC
66 GCACGCAGGGGGGACTGGGTCGATCCCCGGCTTACGCATTCTGCCTCTT-CGGTCGGCTGAGCGC
* *
24034066 CCGCACGCTTGTTTCGTGGGATGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
24034095 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
24034122 CATACAGAGC
Statistics
Matches: 273, Mismatches: 61, Indels: 19
0.77 0.17 0.05
Matches are distributed among these distances:
156 2 0.01
157 98 0.36
158 77 0.28
159 95 0.35
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACTGGGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:24035214 original size:26 final size:26
Alignment explanation
Indices: 24035184--24035235 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
24035174 TTGACTTAGA
*
24035184 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
*
24035210 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
24035236 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:24035466 original size:368 final size:366
Alignment explanation
Indices: 24034764--24036204 Score: 1396
Period size: 368 Copynumber: 3.9 Consensus size: 366
24034754 TGCGCATCCT
* * * ** *
24034764 GCCTCTCTGGTCGGCTGAGCGCCCGTATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGGTCGGCTGAACGCCCGCACACTCGTTTCATGGGTTGACTTAGACATACGGAGTTCA
* * * * *
24034829 TGCCCACTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATCGAACCGGATTGAAGGTTGCGGCA
66 TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAAGGTTGCGGCA
* * *
24034894 GTAAGATCGACAGCATGTAGGGGGGACCAGG-CTGATCTTCGACTTGCGCATTTTGCCTCTCCGG
131 GTAAGATCGACAGCACGCAGGGGGGACCAGGTC-GATCCTCGACTTGCGCATTTTGCCTCTCCGG
* * * * *
24034958 TCGACTGAGCACCTGCATGCTCGTTTTATGGGTTGGCTTAGGTATACGGAGTACATTCCACGTCT
195 TCGGCTGAGCACCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCT
* ** * * * * *
24035023 AAACCCCAACGGGATTAGGGGTTTTCGTAGCAGGACCGGCAGCGAGATCGACAGCACACAGAGGG
260 AAACCCCAGCGGGA-CCGAGGTTTTGGTAGCAGGACCGGCAGCGAGATCGGCAGCACGCAGAGAG
* * * *
24035088 GGACCGAGCTGATC-CTCGACTTACGCATTATGCCTCTTCGGCC
324 GGATCGAGCTGATCTC-CGACTTAGGCATTATGCCTCTCCGGTC
* *
24035131 AGCCTCTCCGGTCGGCTGAACGCTCGCACACTTGTTTCATGGGTTGACTTAGACATACGGAGTTC
1 -GCCTCTCCGGTCGGCTGAACGCCCGCACACTCGTTTCATGGGTTGACTTAGACATACGGAGTTC
* *
24035196 ATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACTGGATCG-AGGATTGCGA
65 ATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAAGG-TTGCGG
* * * * * * *
24035260 CAGCAGGATCGACAGCACGCAGAGGGGACCAGGTCGATCCTCGGC-TGATGCATTCTGCCTCACC
129 CAGTAAGATCGACAGCACGCAGGGGGGACCAGGTCGATCCTCGACTTG-CGCATTTTGCCTCTCC
* * * * *
24035324 GGTTGGTTGAGCACCCGCAGGCTCATTTTATGGGTTGGCTTAGGCATACAGAGCACATTCCACGT
193 GGTCGGCTGAGCACCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTACATTCCACGT
* * * *
24035389 CTAAACCCCAGTC-GGACCGAGGTTTATGGCAGCAAGATCGGCAGCGATATCGGCAGCACGCAGA
258 CTAAACCCCAG-CGGGACCGAGGTTT-TGGTAGCAGGACCGGCAGCGAGATCGGCAGCACGCAGA
*
24035453 GAGGGATCGAGCTGATCTCCGACTTAGGCATTATGCCTCTCCGATC
321 GAGGGATCGAGCTGATCTCCGACTTAGGCATTATGCCTCTCCGGTC
** * * * * * * * * * *
24035499 GACCTCTCC-AACTGGCTGAGCACCTGGACACTCATTTCGTGGGTTGATTTAG-GATACAGAGCT
1 G-CCTCTCCGGTC-GGCTGAACGCCCGCACACTCGTTTCATGGGTTGACTTAGACATACGGAGTT
* * * * *
24035562 CATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGATCGAGGGTTGCGG
64 CATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAAGGTTGCGG
* * * * * * * * * *
24035627 CAATAGGATCGGCAGCACGCAGGGGAGATCGGGTCAATCCCCGACTTGCGCATTTTGCCTTTCTG
129 CAGTAAGATCGACAGCACGCAGGGGGGACCAGGTCGATCCTCGACTTGCGCATTTTGCCTCTCCG
** * ** * *
24035692 ACCGGCTAAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGCC
194 GTCGGCTGAGCACCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTC
* * * * * * * * * *
24035757 TAAGCCCCAGCTGGACCGAGAGCTGTGGTAGTAGGACCAGTAGCGGGATTGGCAACACGCAGA-A
259 TAAACCCCAGCGGGACCGAG-GTTTTGGTAGCAGGACCGGCAGCGAGATCGGCAGCACGCAGAGA
* * *
24035821 GGGGATCGGGCTGATCTCCGGCTTGGGCATTATGCCTCTCCGGTC
323 -GGGATCGAGCTGATCTCCGACTTAGGCATTATGCCTCTCCGGTC
* * *
24035866 GGCCTCTCCGGTCGGTTGAATGCCCGCACACTCGTTTCGTGGGTTGACTTA-AGCATACGGAGTT
1 -GCCTCTCCGGTCGGCTGAACGCCCGCACACTCGTTTCATGGGTTGACTTAGA-CATACGGAGTT
* ** *
24035930 CATCCCCAGTCTAAGCTTATTGAGTTCATTTCCAGTCTAAGATCAAACCGGATCGAAGGTTGCGG
64 CATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAAGGTTGCGG
* * * * * * * * *
24035995 CAGTAAGATCTATAGCACGCAGGGGGGATCGGGCCTG-TCC-CTAGCTTGTGTATTCTGCCTCTC
129 CAGTAAGATCGACAGCACGCAGGGGGGACCAGGTC-GATCCTCGA-CTTGCGCATTTTGCCTCTC
** * * * * * * *
24036058 CAATCGG-TTAGGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGAATACGAAGTACATTCCAC
192 CGGTCGGCTGA-GCACCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTACATTCCAC
* ** * * * * * * *
24036122 G-CGTAAGCCCCAGCCCGACTGAGGGTTATGGTAGTAGGACCGGTAGCGGGATCGACAGCATGCA
256 GTC-TAAACCCCAGCGGGACCGA-GGTTTTGGTAGCAGGACCGGCAGCGAGATCGGCAGCACGCA
* *
24036186 GAGGGGGATCGAGGTGATC
319 GAGAGGGATCGAGCTGATC
24036205 CTCAGCTTGC
Statistics
Matches: 876, Mismatches: 174, Indels: 46
0.80 0.16 0.04
Matches are distributed among these distances:
366 2 0.00
367 303 0.35
368 567 0.65
369 4 0.00
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (366 bp):
GCCTCTCCGGTCGGCTGAACGCCCGCACACTCGTTTCATGGGTTGACTTAGACATACGGAGTTCA
TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAAGGTTGCGGCA
GTAAGATCGACAGCACGCAGGGGGGACCAGGTCGATCCTCGACTTGCGCATTTTGCCTCTCCGGT
CGGCTGAGCACCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTA
AACCCCAGCGGGACCGAGGTTTTGGTAGCAGGACCGGCAGCGAGATCGGCAGCACGCAGAGAGGG
ATCGAGCTGATCTCCGACTTAGGCATTATGCCTCTCCGGTC
Found at i:24035590 original size:26 final size:26
Alignment explanation
Indices: 24035552--24035602 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
24035542 TTGATTTAGG
24035552 ATACAGAGCTCATCCCCAGTCTAAGC
1 ATACAGAGCTCATCCCCAGTCTAAGC
* * *
24035578 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGCTCATCCCCAGTCTAAG
24035603 ATTAGATCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (26 bp):
ATACAGAGCTCATCCCCAGTCTAAGC
Found at i:24035872 original size:13 final size:13
Alignment explanation
Indices: 24035854--24035880 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
24035844 TGGGCATTAT
24035854 GCCTCTCCGGTCG
1 GCCTCTCCGGTCG
24035867 GCCTCTCCGGTCG
1 GCCTCTCCGGTCG
24035880 G
1 G
24035881 TTGAATGCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.44, G:0.33, T:0.22
Consensus pattern (13 bp):
GCCTCTCCGGTCG
Found at i:24036731 original size:11 final size:11
Alignment explanation
Indices: 24036712--24036744 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
24036702 CCCAGGGCAC
24036712 CATCATCGGAG
1 CATCATCGGAG
*
24036723 CATCGTCGGAG
1 CATCATCGGAG
24036734 CATCATCGGAG
1 CATCATCGGAG
24036745 AGCCTAACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.24, C:0.27, G:0.30, T:0.18
Consensus pattern (11 bp):
CATCATCGGAG
Found at i:24037734 original size:159 final size:156
Alignment explanation
Indices: 24037445--24037958 Score: 439
Period size: 158 Copynumber: 3.2 Consensus size: 156
24037435 ACATTCTGCC
** * * * * * *
24037445 CGTTTCGTTTGTTGGCTTAGGTATAGGGAGCT-CATTCCATGTCTAAGCCCCAACCAGACCGAGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCATG-CTAAGCACCAGCCGGACTGAGG
** * * * * * * * *
24037509 GTGTG-G-CAGCCGAACCGACAGCACACAGAGGGGGATCGGGCCGATCCTCGACTTGCGCATTAT
64 GT-TGCGACAGTAGGATCGACAACACGCAGA-GGGGATCGGGTCGATCCTCGGCTT-AGCATTCT
* * * *
24037572 GCCTCTTCGGTTGGCTCAGTGCCCAAACGCT
126 GCCTCTCCGGTAGGCTGAGTGCCCACACGCT
* * * * * *
24037603 TGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCTCA-GTCTAAG-ATCAGACCGGA-TCGA
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTC-CATG-CTAAGCACCAG-CCGGACT-GA
* * *
24037665 GGGTTGCGATAGTAGGATCGACAATATGCA-ATGGAGGATCGGGTCGATCCTCGGCTTATGCATT
62 GGGTTGCGACAGTAGGATCGACAACACGCAGA-GG-GGATCGGGTCGATCCTCGGCTTA-GCATT
***
24037729 CTGCCTCTCCGACCGGCTGAGTGCCCACACGCT
124 CTGCCTCTCCGGTAGGCTGAGTGCCCACACGCT
* * * *
24037762 CATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGCTAAGCCCCAGTCGGACTGAGGGT
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGCTAAGCACCAGCCGGACTGAGGGT
* * * * * * *
24037827 TGTGGCAGTAGGATTGACAGCACGTAGAGGGTGACCGGGTCGATCCCCGGCTTGAGCATTCTGCC
66 TGCGACAGTAGGATCGACAACACGCAGAGGG-GATCGGGTCGATCCTCGGCTT-AGCATTCTGCC
*
24037892 TCTCCGGTAGGCTGAGTGCCCGCACGCT
129 TCTCCGGTAGGCTGAGTGCCCACACGCT
24037920 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCA
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCA
24037959 CATCTAAGCC
Statistics
Matches: 283, Mismatches: 59, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
157 6 0.02
158 175 0.62
159 102 0.36
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (156 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGCTAAGCACCAGCCGGACTGAGGGT
TGCGACAGTAGGATCGACAACACGCAGAGGGGATCGGGTCGATCCTCGGCTTAGCATTCTGCCTC
TCCGGTAGGCTGAGTGCCCACACGCT
Found at i:24037887 original size:158 final size:158
Alignment explanation
Indices: 24037704--24037997 Score: 441
Period size: 158 Copynumber: 1.9 Consensus size: 158
24037694 AATGGAGGAT
* *
24037704 CGGGTCGATCCTCGGCTTATGCATTCTGCCTCTCCGACCGGCTGAGTGCCCACACGCTCATTTCA
1 CGGGTCGATCCCCGGCTTATGCATTCTGCCTCTCCGACAGGCTGAGTGCCCACACGCTCATTTCA
* * *
24037769 TGGGTTGGCTTAGGCATACGGAGTACATT-C-CATGCTAAGCCCCAGTCGGACTGAGGGTTGTGG
66 TGGGTTGGCTTAGGCATACGGAGTACATTCCACAT-CTAAGCCCCA-ACCGACGGAGGGTTGTGG
*
24037832 CAGTAGGATTGACAGCACGTAGAGGGTGAC
129 CAGCAGGATTGACAGCACGTAGAGGGTGAC
** * *
24037862 CGGGTCGATCCCCGGCTTGA-GCATTCTGCCTCTCCGGTAGGCTGAGTGCCCGCACGCTCGTTTC
1 CGGGTCGATCCCCGGCTT-ATGCATTCTGCCTCTCCGACAGGCTGAGTGCCCACACGCTCATTTC
*
24037926 GTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAACCGACGGAGGGTTGTGGC
65 ATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAACCGACGGAGGGTTGTGGC
24037991 AGCAGGA
130 AGCAGGA
24037998 CTGGTAGCGA
Statistics
Matches: 122, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
158 107 0.88
159 12 0.10
160 3 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
CGGGTCGATCCCCGGCTTATGCATTCTGCCTCTCCGACAGGCTGAGTGCCCACACGCTCATTTCA
TGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAACCGACGGAGGGTTGTGGCA
GCAGGATTGACAGCACGTAGAGGGTGAC
Found at i:24038982 original size:159 final size:158
Alignment explanation
Indices: 24038516--24039018 Score: 485
Period size: 159 Copynumber: 3.2 Consensus size: 158
24038506 CCTAGTCTAA
* * * **
24038516 GCATACGGAGTTCATTCCCAGTCGAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATTGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATTGACA
* *
24038581 GCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCACC
66 GCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* *
24038646 CGCACGCTGGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGACTTAG
* * * ** * * * **
24038674 GCTTAGGGAGCTCATT-CCATGTCTAAGCCCCAG-CCGGATCGAGGGTTGTGGTAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGCGGCAGCAGGATTGA
* * * * * * * ** *
24038737 CAACACGCAGAGGGCAACTGGG-CTGATCCCTGGCTTGCGCATTATGCCTTTTCGACTAGCTCAG
64 CAGCACGCAGGGGGGATC-GGGTC-GATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAG
** * * * *
24038801 CGCTTGTATGCTCATTTCGTGGGTTGACTTAT
127 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** * *
24038833 GCATATGGAGTTCATTCCCAATCTAAGATTGGACCGGATCAAGGGTTGCGACAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATTGACA
* * * * * *
24038898 GTATGCAGGGTGGGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCAACCGGCTGAGCGC
66 GCACGCAGGG-GGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
24038963 CCGCACGCTCGTTTCGTGGGTT-AGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGA-CTTAG
24038992 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
24039019 CATACGGAGC
Statistics
Matches: 261, Mismatches: 74, Indels: 19
0.74 0.21 0.05
Matches are distributed among these distances:
157 3 0.01
158 60 0.23
159 190 0.73
160 8 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATTGACA
GCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:24039042 original size:26 final size:26
Alignment explanation
Indices: 24038992--24039044 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24038982 GTTAGCTTAG
* *
24038992 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATCTCTAA
24039018 GCATACGGAGCTCATTCCCA-CTCTAA
1 GCATACGGAGCTCATT-CCATCTCTAA
24039044 G
1 G
24039045 AATTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATCTCTAA
Found at i:24039747 original size:26 final size:26
Alignment explanation
Indices: 24039711--24039766 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
24039701 GTTGACTTAG
24039711 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
24039737 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
24039763 GCAT
1 GCAT
24039767 TGACCCGGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:24040087 original size:26 final size:26
Alignment explanation
Indices: 24040058--24040110 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
24040048 GTTGACTTAG
24040058 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
24040084 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24040110 G
1 G
24040111 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24040765 original size:26 final size:26
Alignment explanation
Indices: 24040735--24040787 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24040725 GTTGACTTAG
*
24040735 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGCTCATCCCTAGTCTAA
* **
24040761 GCATATGGAGCTCATTTCTAGTCTAA
1 GCATACGGAGCTCATCCCTAGTCTAA
24040787 G
1 G
24040788 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCTAGTCTAA
Found at i:24041048 original size:157 final size:158
Alignment explanation
Indices: 24040800--24041101 Score: 462
Period size: 157 Copynumber: 1.9 Consensus size: 158
24040790 CAGACTGGAT
* * * * *
24040800 CGAGGGTTGCAACAGTAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCTCGGCTTACGCAT
1 CGAGGGTTCCAACAGCAGGATCGACAACACGCAGGGGGGATCGGGTCAAACCTCGGCTTACGCAT
* * *
24040865 TCTGCCTCTCCTACCGGTTGAGCACCCGTGCGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
66 TCTGCCTCTCCGACCGGCTGAGCACCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
*
24040930 TCATTCCCAGTCTAAAATTGGACCAGAC
131 TCATTCCCAATCTAAAATTGGACCAGAC
* * * **
24040958 CGAGGGTTCCAGCAGCAGGATCGACAACACGTA-GGGGGATCGGGTCAAACTTCGGCTTGTGCAT
1 CGAGGGTTCCAACAGCAGGATCGACAACACGCAGGGGGGATCGGGTCAAACCTCGGCTTACGCAT
*
24041022 TCTGCCTCTCCGACCGGCTGAGCACCCGTACGCTCATTTCGTGGGTTGGTTTAGGCATACGGAGT
66 TCTGCCTCTCCGACCGGCTGAGCACCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
24041087 TCATTCCCAATCTAA
131 TCATTCCCAATCTAA
24041102 GCATACGGAA
Statistics
Matches: 129, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
157 101 0.78
158 28 0.22
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
CGAGGGTTCCAACAGCAGGATCGACAACACGCAGGGGGGATCGGGTCAAACCTCGGCTTACGCAT
TCTGCCTCTCCGACCGGCTGAGCACCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCCAATCTAAAATTGGACCAGAC
Found at i:24041105 original size:26 final size:26
Alignment explanation
Indices: 24041076--24041128 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24041066 GTTGGTTTAG
**
24041076 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAACTCATTCCCAATCTAA
24041102 GCATACGGAACTCATTCCCAATCTAA
1 GCATACGGAACTCATTCCCAATCTAA
24041128 G
1 G
24041129 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGGAACTCATTCCCAATCTAA
Found at i:24042660 original size:368 final size:360
Alignment explanation
Indices: 24041762--24043022 Score: 1250
Period size: 355 Copynumber: 3.5 Consensus size: 360
24041752 TCTGGTCGAC
* * * * * *
24041762 TGAGCGCCCCGTACACTCGTTTCGTGGGTTGACTTAGGCATATGAAGCTCATCCCCAGTCTAAGC
1 TGAGCG-CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGC
* * * * * *
24041827 ATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTACGGC-AACAGGATCGATAG
65 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGCGTTACGACTAGCAGGATCGACAG
* * ** * * * * * *
24041891 CACGCAAGAGGGATTGAGCCT-ATCCCCGACTTTCGTATTCTGCCTCTTCGACCGGTTGAGCGCC
130 CACGCAGGGGGGACCGAG-CTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCTGCTGAGCGCC
* *
24041955 CGCACGCTTGTTTCATGGGTTGGCTTAGGCATATGGAGTACATTCCACGTCTAAGCCCCAGTCGG
194 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGG
* * ** * *
24042020 ATCGAGGGTTGTGGCAGC-GAGACCAGTAGTGGGATCGGCAGCACCCAGAGGGGGACCAGGCTGA
259 ACCGAGGGTTGTGGCAGCAG-GA-CGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCGGGCTGA
* * *
24042084 TCGCCAGA-TTACACATTATGCCT-TT---TC-G-ATCGG
322 TC-CCTGACTTGCGCATTATGCCTCTTCGATCAGCATCGG
* * * *
24042117 CTGAGCGCCTGCAGGCTCATTTCATGGGTTGACTTAGGCATCCGAAGTTCATCCCTAGTCTAAGC
1 -TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGC
* * * *
24042182 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGC-TTACGAC-AGCAGAATTGACA
65 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCG-AGCGTTACGACTAGCAGGATCGACA
** ** * * * * * * *
24042245 GCACGTGGGGGGGACCGAGCCAATCCCCAGCTTACTCATTTTGCCTCTTTGGCCTACTGAGCACC
129 GCACGCAGGGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCTGCTGAGCGCC
* *
24042310 CGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTAGTCGG
194 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGG
* * * *
24042375 ACCGAAGGTTGTGGTAGCAGGATCGGTAGCAAGATCGACAGCACGCAGAGGGGGACCGGGCTGAT
259 ACCGAGGGTTGTGGCAGCAGGA-CGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCGGGCTGAT
24042440 CCCTGACTTGCGCATTATGCCTCTTCGATCAGCCTTTCCAGTCGG
323 CCCTGACTTGCGCATTATGCCTCTTCGATCAG------CA-TCGG
* * *
24042485 TTGAGCGCCCGCACGATCATTTCGTGGGTTGACTTAGCCATACGAAGTTCATCCCCAGTCTAAGC
1 -TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGC
* * * * * * * *
24042550 AGACGGAGTTCATTCCTAGTCTAAGATCGGATCGGATTGAGCGTTGCGACTA-TAGGATCGGCAG
65 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGCGTTACGACTAGCAGGATCGACAG
* *
24042614 CACGCAGGGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGG-GTGGCTGAGCGCC
130 CACGCAGGGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCT-GCTGAGCGCC
* * ** *
24042678 AGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAACCGA
194 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGG
** * ** * * * *
24042743 ACCGAGGGTTGTCACAGTAGGACTGACAGCAGGATCGGTAGCACGCAGAAGGGGATCGGGTTGAT
259 ACCGAGGGTTGTGGCAGCAGGAC-GGTAGCAGGATCGGCAGCACGCAGAGGGGGACCGGGCTGAT
* * * *
24042808 CCATGGCCTGCGCATTATGCCTCTCCGATCA-C--C--
323 CCCTGACTTGCGCATTATGCCTCTTCGATCAGCATCGG
* * * * *
24042841 TGAGCGCTCGTATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
* * * * * **
24042906 TACGGAGTTCATTCCCAGTCTAACATTAGACCGAATCGAGGGTTACG-GTAGCAGGATCGGGAGC
66 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGCGTTACGACTAGCAGGATCGACAGC
* * * *
24042970 ATC-CAGGGGGGGATCGAGCTGATCCTCGGCTTGTGCATTCTACCTCTTCGGCC
131 A-CGCA-GGGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCC
24043023 AGCCTCTCCC
Statistics
Matches: 739, Mismatches: 141, Indels: 49
0.80 0.15 0.05
Matches are distributed among these distances:
354 7 0.01
355 377 0.51
356 52 0.07
358 1 0.00
359 2 0.00
360 1 0.00
361 1 0.00
367 6 0.01
368 291 0.39
369 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (360 bp):
TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGCGTTACGACTAGCAGGATCGACAGC
ACGCAGGGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCTGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGAC
CGAGGGTTGTGGCAGCAGGACGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCGGGCTGATCCC
TGACTTGCGCATTATGCCTCTTCGATCAGCATCGG
Found at i:24042907 original size:26 final size:26
Alignment explanation
Indices: 24042877--24042928 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
24042867 GTTGACTTAG
24042877 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24042903 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24042929 CATTAGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24043381 original size:549 final size:558
Alignment explanation
Indices: 24042483--24043490 Score: 1238
Period size: 549 Copynumber: 1.8 Consensus size: 558
24042473 CTTTCCAGTC
* *
24042483 GGTTGAGCGCCCGCACGATCATTTCGTGGGTTGACTTAGCCATACGAAGTTCATCCCCAGTCTAA
1 GGTTGAGCGCCCGCACGATCATATCATGGGTTGACTTAGCCATACGAAGTTCATCCCCAGTCTAA
* * * * * * *
24042548 GCAGACGGAGTTCATTCCTAGTCTAAGATCGGATCGGATTGAGCGTTGCGACTATAGGATCGGCA
66 GCAGACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGCGTTACGACTATAGCATCGGCA
* * ****
24042613 GCACGCAGGGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGGTGGCTGAGCGCC
131 GCACGCAGGGGGGACCGAGCTGATCACCGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCC
24042678 AGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAACCGA
196 AGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAACCGA
* * * *
24042743 ACCGAGGGTTGTCACAGTAGGACTGACAGCAGGATCGGTAGCACGCAGAAGGGGATCGGGTTGAT
261 ACAGAGGGTTGTCACAGGAGGACCGACAGCAGGATCGGTAGCACGCAGAAGAGGATCGGGTTGAT
* * ** *
24042808 CCATGGCCTGCGCATTATGCCTCT-CCGA-T-CA-C-CTGAGCGCTCGTATGCTCGTTTCATGGG
326 CCATGGCCTGCGCATTATGCCTCTCCCGACTCCAGCGCTGAGCACCCACACGCTCGTTTCATGGG
24042868 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATT
391 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATT
24042933 AGACCGAATCGAGGGTTACGGTAGCAGGATCGGGAGCATCCAGGGGGGGATCGAGCTGATCCTCG
456 AGACCGAATCGAGGGTTACGGTAGCAGGATCGGGAGCATCCAGGGGGGGATCGAGCTGATCCTCG
24042998 GCTTGTGCATTCTACCTCTTCGGCCAGCCTCTCCCATT
521 GCTTGTGCATTCTACCTCTTCGGCCAGCCTCTCCCATT
* * * * *
24043036 GGTTGAGTGCCCGCACGCTCATATCATGGGTTGACTTAGGCATACGGAGTTCATCCCCTGTCTAA
1 GGTTGAGCGCCCGCACGATCATATCATGGGTTGACTTAGCCATACGAAGTTCATCCCCAGTCTAA
* * * * *
24043101 GTATATAGAGTTCATTCCCAGTCTAAGATCAGACCGG-TCGA-CGGTTACGGC-AGTAGCATCTG
66 GCAGACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGC-GTTACGACTA-TAGCATCGG
* * * * * * * * *
24043163 TAGCACGTAGGGGGGATCGATC-GAT-ACCGACTTGTGCATTTTGCCTCTCTGACCAGTTGAGTG
129 CAGCACGCAGGGGGGACCGAGCTGATCACCGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCG
* * * * *
24043226 CCAGC-CGCTCGTTTCGTGTGTTGGCTTAGGCATACGGCGTACATTCCACGTCTAAGCCCCAGCC
194 CCAGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAACC
** * *
24043290 -AGACAGAGGGTTGTCGTAGCGA-GACCGGCAGCGGGATCGGTAGCACGCAG-AGAAGGA-CAGG
259 GA-ACAGAGGGTTGTCACAG-GAGGACCGACAGCAGGATCGGTAGCACGCAGAAG-AGGATC-GG
* * *
24043351 GTTGATCC-TCGGCTTGTGCATTATGCCTCTCCGACCGACCTCTCCAGTCGGTTGAGCACCCACA
320 GTTGATCCAT-GGCCTGCGCATTATGCCTCT-C--CCGA---CTCCAG-C-GCTGAGCACCCACA
* ** *
24043415 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTTCAGTCTAAGCATATGGAGTTCAT
376 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCAT
24043480 TCCCAGTCTAA
441 TCCCAGTCTAA
24043491 GATCGGACCA
Statistics
Matches: 376, Mismatches: 59, Indels: 31
0.81 0.13 0.07
Matches are distributed among these distances:
548 5 0.01
549 124 0.33
550 33 0.09
551 5 0.01
552 34 0.09
553 92 0.24
557 1 0.00
558 2 0.01
560 1 0.00
562 79 0.21
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (558 bp):
GGTTGAGCGCCCGCACGATCATATCATGGGTTGACTTAGCCATACGAAGTTCATCCCCAGTCTAA
GCAGACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGCGTTACGACTATAGCATCGGCA
GCACGCAGGGGGGACCGAGCTGATCACCGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCC
AGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAACCGA
ACAGAGGGTTGTCACAGGAGGACCGACAGCAGGATCGGTAGCACGCAGAAGAGGATCGGGTTGAT
CCATGGCCTGCGCATTATGCCTCTCCCGACTCCAGCGCTGAGCACCCACACGCTCGTTTCATGGG
TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATT
AGACCGAATCGAGGGTTACGGTAGCAGGATCGGGAGCATCCAGGGGGGGATCGAGCTGATCCTCG
GCTTGTGCATTCTACCTCTTCGGCCAGCCTCTCCCATT
Found at i:24043486 original size:26 final size:26
Alignment explanation
Indices: 24043439--24043491 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24043429 GTTGACTTAG
*
24043439 GCATACGGAGTTCATCTTCAGTCTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
*
24043465 GCATATGGAGTTCAT-TCCCAGTCTAA
1 GCATACGGAGTTCATCT-CCAGTCTAA
24043491 G
1 G
24043492 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAGTCTAA
Found at i:24043891 original size:26 final size:26
Alignment explanation
Indices: 24043841--24043893 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24043831 GTTGGTTTAG
* *
24043841 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24043867 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24043893 G
1 G
24043894 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24044874 original size:26 final size:26
Alignment explanation
Indices: 24044837--24044886 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
24044827 GACTTAGGCA
24044837 TACGGAGCTCATCCCCAGTCTAAGCC
1 TACGGAGCTCATCCCCAGTCTAAGCC
* *
24044863 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGCTCATCCCCAGTCTAAG
24044887 ATCGGACTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (26 bp):
TACGGAGCTCATCCCCAGTCTAAGCC
Found at i:24045338 original size:158 final size:155
Alignment explanation
Indices: 24044867--24045362 Score: 443
Period size: 158 Copynumber: 3.1 Consensus size: 155
24044857 TAAGCCTACG
** * * *
24044867 GAGTTCATTCCCA-GTCTAAGATCGGACTGGACCGACGGTT-GCAGCAGCAGGATCGAAAGCATG
1 GAGTTCATTCCCATGTCTAAGATCAAACTGGACCGAGGGTTCG-A-TAGCAGGATCGAAA-CACG
* ** *
24044930 CAGGGGGGACCAGGTCGATGCCCGGCTTGCGCATTCTGCTCTCCGACCGATTGAGCGCCCGCACG
63 CAGGGGGGACCGGGTCGAT-CCCGGCTTGCGCATTCTGCTCTCCGACCGGCTGAGCGCCCGAACG
* **
24044995 CCCGTTTCATGGGTTGGCTTAGGCATAGG
127 CTCGTTTCATGGGTTGGCTTAGGCATACA
* ** * * * * *
24045024 GAGCTCATT-CCATGTCTAAGCCCCAA-TCGGACCGAGGGTT-G-TGGCAGCGAGACCAGCAGCA
1 GAGTTCATTCCCATGTCTAAGATCAAACT-GGACCGAGGGTTCGATAGCA--G-GATC-GAAACA
* * * * * ** * *
24045085 CGCAGAGGGGGACCGAG-CTAATCCCCGGCTTGCGCATTATGCCTTTTCGGTCGGCTTAGCACCC
61 CGCAG-GGGGGACCGGGTC-GAT-CCCGGCTTGCGCATTCTG-CTCTCCGACCGGCTGAGCGCCC
* * * *
24045149 GTACGCTCGTTTCATTGGTTGACTTATGCATACA
122 GAACGCTCGTTTCATGGGTTGGCTTAGGCATACA
24045183 GAGTTCATTCCCA-GTCTAAGATCAAACTGGACCGAGGGTTACGATAGCAGGATCGATAACACGC
1 GAGTTCATTCCCATGTCTAAGATCAAACTGGACCGAGGGTT-CGATAGCAGGATCGA-AACACGC
* *
24045247 AGGGGGGACCGGGTCGATCCCTGACTTGCGCATTCTGTCTCTCCGACCGGCTGAGCGCCCGAACA
64 AGGGGGGACCGGGTCGATCCC-GGCTTGCGCATTCTG-CTCTCCGACCGGCTGAGCGCCCGAACG
*
24045312 CTCATTTCATGGGTTGGCTTAGGCATACA
127 CTCGTTTCATGGGTTGGCTTAGGCATACA
*
24045341 GAGTTC-TTTCCATGTCTAAGAT
1 GAGTTCATTCCCATGTCTAAGAT
24045363 TTTGAGCCAT
Statistics
Matches: 263, Mismatches: 58, Indels: 35
0.74 0.16 0.10
Matches are distributed among these distances:
154 3 0.01
156 5 0.02
157 47 0.18
158 115 0.44
159 83 0.32
160 5 0.02
161 1 0.00
162 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (155 bp):
GAGTTCATTCCCATGTCTAAGATCAAACTGGACCGAGGGTTCGATAGCAGGATCGAAACACGCAG
GGGGGACCGGGTCGATCCCGGCTTGCGCATTCTGCTCTCCGACCGGCTGAGCGCCCGAACGCTCG
TTTCATGGGTTGGCTTAGGCATACA
Found at i:24046060 original size:26 final size:26
Alignment explanation
Indices: 24046030--24046082 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24046020 GTTGACTTAG
*
24046030 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
24046056 GCATACGGAGTTCGTTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24046082 G
1 G
24046083 ATTAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24046416 original size:26 final size:26
Alignment explanation
Indices: 24046385--24046463 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
24046375 GTTGACTTAG
*
24046385 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24046411 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
24046437 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24046463 G
1 G
24046464 ATTGGACAGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24046770 original size:159 final size:157
Alignment explanation
Indices: 24046486--24046779 Score: 342
Period size: 159 Copynumber: 1.9 Consensus size: 157
24046476 TGAGGGTTGC
* * ** *
24046486 GGCAGCAGGATTGGCAGCATGTAGAGGGATCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCC
1 GGCAGCAGGATTGGCAGCATGCAGAGGGACCGGGCCGATCCCTGGCTTACGCATTATGCCTCTCC
* * * * *
24046551 GGCTGGCTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGCCATAGGGAGCTCATTCC-ATG
66 GGCTGGCTCAACACCCGCACACCCGTTTCATAGGTTGACTTAGCCATACGGAGCTCATTCCTA-G
24046615 TCTAAGTCCCAGCCGGACCAAGGATTGT
130 TCTAAGTCCCAGCCGGACCAAGGATTGT
* * *
24046643 GGCAGCGGGATTGGTAGCATGCAGAGGGGGACCGGGTCGATCTCC-GGCTTACGCATTATGCCTC
1 GGCAGCAGGATTGGCAGCATGCAGA--GGGACCGGGCCGATC-CCTGGCTTACGCATTATGCCTC
* * * ** * *
24046707 TTCGGCTGGCTCAACACCCGTACGCTTGTTTCATAGGTTGACTTATG-CATACGGAGTTGATTCC
63 TCCGGCTGGCTCAACACCCGCACACCCGTTTCATAGGTTGACTTA-GCCATACGGAGCTCATTCC
24046771 TAGTCTAAG
127 TAGTCTAAG
24046780 ATCAGACCGA
Statistics
Matches: 112, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
157 22 0.20
159 86 0.77
160 4 0.04
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (157 bp):
GGCAGCAGGATTGGCAGCATGCAGAGGGACCGGGCCGATCCCTGGCTTACGCATTATGCCTCTCC
GGCTGGCTCAACACCCGCACACCCGTTTCATAGGTTGACTTAGCCATACGGAGCTCATTCCTAGT
CTAAGTCCCAGCCGGACCAAGGATTGT
Found at i:24049763 original size:32 final size:32
Alignment explanation
Indices: 24049718--24049783 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 32
24049708 CTCCGGCCGA
* *
24049718 CTGAGCACTTGCACGCTCATTTTGTGGGTAGG
1 CTGAGCACCTGCACGCTCATTTCGTGGGTAGG
*
24049750 CTGAGCACCTGCACGCTCGTTTCGTGGGTAGG
1 CTGAGCACCTGCACGCTCATTTCGTGGGTAGG
24049782 CT
1 CT
24049784 TAGGCATACG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.14, C:0.26, G:0.32, T:0.29
Consensus pattern (32 bp):
CTGAGCACCTGCACGCTCATTTCGTGGGTAGG
Found at i:24050367 original size:26 final size:26
Alignment explanation
Indices: 24050337--24050389 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24050327 GTTGACTTTG
24050337 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
24050363 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24050389 G
1 G
24050390 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24050672 original size:159 final size:158
Alignment explanation
Indices: 24050399--24050684 Score: 356
Period size: 159 Copynumber: 1.8 Consensus size: 158
24050389 GATCAGACCA
* * * * *
24050399 GACCGAGGGTTGTGGTAGCAGAATCAACAGCACGCAGAGGGGACCGGGCCGATCCTCGACTTGTG
1 GACCGAGGGTTGTGGCAGCAGAACCAACAACACGCAGAGGGGACCGGGCCGATCCCCGACTTGTA
* ** * * * *
24050464 CATTCTGCCTCTCCGGTTGGCTGAGCGCCCGTATGCCCGTTTCGCGGGTTGGCTTAGGCATAGGG
66 CATTATGCCTCTCCGGCCGGCTGAGCACCCGCACGCCCGTTTCGCGGGTTGACTTAGGCATAGGG
24050529 AGCTCATTCCATGTCTAAGCCCCAGTCG
131 AGCTCATTCCATGTCTAAGCCCCAGTCG
* * * ** *
24050557 GACCGAGGGTTGTGGCAGCGGGACCGACAACACGCAGAGGGGGACCGGGTTGATCCCCGGCTTGT
1 GACCGAGGGTTGTGGCAGCAGAACCAACAACACGCAGA-GGGGACCGGGCCGATCCCCGACTTGT
* ** * *
24050622 ACATTATGCCTCTTCGGCCGGCTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTATGCATA
65 ACATTATGCCTCTCCGGCCGGCTGAGCACCCGCACGCCCGTTTCGCGGGTTGACTTAGGCATA
24050685 CAAAGTTCAT
Statistics
Matches: 104, Mismatches: 23, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
158 32 0.31
159 72 0.69
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.22
Consensus pattern (158 bp):
GACCGAGGGTTGTGGCAGCAGAACCAACAACACGCAGAGGGGACCGGGCCGATCCCCGACTTGTA
CATTATGCCTCTCCGGCCGGCTGAGCACCCGCACGCCCGTTTCGCGGGTTGACTTAGGCATAGGG
AGCTCATTCCATGTCTAAGCCCCAGTCG
Found at i:24050695 original size:159 final size:160
Alignment explanation
Indices: 24050363--24050866 Score: 509
Period size: 158 Copynumber: 3.2 Consensus size: 160
24050353 CCCAGTCTAA
* * * * *
24050363 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGGTAGCAGAATCAA
1 GCATACAGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGA
* * * **
24050426 CAGCACGCAGA-GGGGACCGGGCCGATCCTCGACTTGTGCATTCTGCCTCTCCGGTTGGCTGAGC
65 CAGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGTACATTCTGCCTCTCCGGCCGGCTGAGC
* * *
24050490 GCCCGTATGCCCGTTTCGCGGGTTGGCTTAG
130 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
** * * * * * *
24050521 GCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACAGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
24050585 AACACGCAGAGGGGGACCGGGTTGATCCCCGGCTTGTACATTATGCCTCTTCGGCCGGCTGAGCA
66 AGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGTACATTCTGCCTCTCCGGCCGGCTGAGCG
* * * *
24050650 CCCGCACGCTTGTTTCGTGGGTTGACTTAT
131 CCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* *** * * * *
24050680 GCATACAAAGTTCATTCCCA-GTCTAAG-ATTGGACCAGACAGTGGGTTGCGGCAGTAGGATCGA
1 GCATACAGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGA
*** * * *
24050743 CAGCATATAG-GGGGGACCGGGTCGATCCTCGGCTTGCACATTCTGCCTCTCCAGCCGGTTGAGC
65 CAGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGTACATTCTGCCTCTCCGGCCGGCTGAGC
* * *
24050807 GCCCGTACACTCGTTTCATGGGTTGGCTTGG
130 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
24050838 GCATACAGAGTTCATTCCATGTCTAAGCA
1 GCATACAGAGTTCATTCCATGTCTAAGCA
24050867 TATGGAGGTC
Statistics
Matches: 274, Mismatches: 65, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
157 6 0.02
158 147 0.54
159 118 0.43
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (160 bp):
GCATACAGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGAC
AGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGTACATTCTGCCTCTCCGGCCGGCTGAGCG
CCCGTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:24051605 original size:26 final size:26
Alignment explanation
Indices: 24051569--24051621 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24051559 GTTGACTTAG
*
24051569 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
24051595 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24051621 G
1 G
24051622 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24052326 original size:26 final size:26
Alignment explanation
Indices: 24052290--24052340 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
24052280 GTTGACTTAG
24052290 GCATACGGAGTTCATCCCCAGTCTAT
1 GCATACGGAGTTCATCCCCAGTCTAT
*
24052316 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
24052341 AGATCGGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAT
Found at i:24052377 original size:366 final size:367
Alignment explanation
Indices: 24051518--24052441 Score: 1092
Period size: 355 Copynumber: 2.6 Consensus size: 367
24051508 TGCGTATCCT
* * *
24051518 GCCTCTCTGGTCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTC-GGTCGACTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * *
24051583 TTCCCATTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGATA
65 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGCTA
* * * ** * * * *
24051648 GCAGGATCAACAGCACGCAGGAGGGATCGGGTTTA-CCTTCAGCTTGCGCATTTTGCCTCTCCGC
130 GCAGGATCGACAGCACGAAGGAGGGACCGGGTCGATCCTT-GGCTTACGCATTCTGCCTCTCCGA
* * * * *
24051712 CCGGCTGAGCACCTGCACGCTTATTTCGTGGGTTGGCCTAGGCATACGGAGTGAATTCCACGTCT
194 TCGGTTGAGCACCTGCACACTCATTTCGTGGGTTGGCCTAGGCATACGAAGTGAATTCCACGTCT
* * *
24051777 AAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAAGACCGACAGCGGGATCGACAGCATGCAGAGAG
259 AAGCCCCAGCCGAACCAAGGGTTGTGGCAGCAAGACCGACAGCGGGATCGACAGCACGCAGAGAA
* * * *
24051842 GGATCGGGCTGATCCCCGACTTGTGCATTATGCTTTTCCGACCA
324 GGACCGGACTGATCCCCGACTTGTGCATTATGCCTCTCCGACCA
* ** * * * *
24051886 ------------ACTGAGCACCCATATGCTC-TTTTCATGGGTTGACTTAGGCACACGGAGTGCA
1 GCCTCTCGGTCGACTGAGCGCCCGCACGCTCATTTT-GTGGGTTGACTTAGGCATACGGAGTTCA
* * *
24051938 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGAATCGAGGGTTACGGC-
65 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGC-GCT
* * * * * *
24052002 AGCAGGATCGACAGCACGTAGGA-GGACCAGGCCGATCCCTGGCTTACGTATTCTACCTCTCCGA
129 AGCAGGATCGACAGCACGAAGGAGGGACCGGGTCGATCCTTGGCTTACGCATTCTGCCTCTCCGA
* * * *
24052066 TCGGTTGAGCACCTGCGCACTCGTTTTGTGGGTTGGCTTAGGCATACGAAGT-ACATTCCACGTC
194 TCGGTTGAGCACCTGCACACTCATTTCGTGGGTTGGCCTAGGCATACGAAGTGA-ATTCCACGTC
* * * * *
24052130 TAAGCCCCA-TCGGACCAATGGTTGTGGTAGCAAGACCGATAGCGGGATCGACAGCACGCAGAGA
258 TAAGCCCCAGCCGAACCAAGGGTTGTGGCAGCAAGACCGACAGCGGGATCGACAGCACGCAGAGA
*
24052194 AGGACCGGACTGATCCTCGACTTGTGCATTATGCCTCTCCGACCA
323 AGGACCGGACTGATCCCCGACTTGTGCATTATGCCTCTCCGACCA
* *
24052239 GCCTCTCCGGTCGACTGAGTGCCCGCACGCTCATTTTGTTGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCT-CGGTCGACTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCA
* *
24052304 TCCCCAGTCTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGCTA
65 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGCTA
* * * * *
24052369 GTAGGATCGACAACACGAAGAAGGGACCGGGTCGATCCTTGGCTTACGCATTCTGCCTTTTCGAT
130 GCAGGATCGACAGCACGAAGGAGGGACCGGGTCGATCCTTGGCTTACGCATTCTGCCTCTCCGAT
24052434 CGGTTGAG
195 CGGTTGAG
24052442 AGCCCGTATG
Statistics
Matches: 457, Mismatches: 79, Indels: 41
0.79 0.14 0.07
Matches are distributed among these distances:
353 88 0.19
354 90 0.20
355 116 0.25
356 1 0.00
365 2 0.00
366 113 0.25
367 47 0.10
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (367 bp):
GCCTCTCGGTCGACTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCAT
CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGCTAG
CAGGATCGACAGCACGAAGGAGGGACCGGGTCGATCCTTGGCTTACGCATTCTGCCTCTCCGATC
GGTTGAGCACCTGCACACTCATTTCGTGGGTTGGCCTAGGCATACGAAGTGAATTCCACGTCTAA
GCCCCAGCCGAACCAAGGGTTGTGGCAGCAAGACCGACAGCGGGATCGACAGCACGCAGAGAAGG
ACCGGACTGATCCCCGACTTGTGCATTATGCCTCTCCGACCA
Found at i:24052794 original size:157 final size:155
Alignment explanation
Indices: 24052316--24052816 Score: 493
Period size: 159 Copynumber: 3.2 Consensus size: 155
24052306 CCCAGTCTAT
*
24052316 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGCTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGC-AGTAGGATCGACA
* * * * * * *
24052381 ACACGAAGAAGGGACCGGGTCGATCCTTGGCTTACGCATTCTGCCTTTTCGATCGGTTGAGAGCC
65 GCACG-AG-GGGGACCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTTCGACCGGCTGAGCGCC
* * * *
24052446 CGTATGCCCATTTCCTGGGTTGGCTTAG
128 CGCATGCTCGTTTCGTGGGTTGGCTTAG
* * ** ** * * **
24052474 GCATAGGGAGCTCATT-CCATGTCTGTGCCCTAG-CCGGACCGAGGGTTGTGGCAGCGGGATCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGATCGGACCGAGGGTTG-CGCAGTAGGATCGA
* * * * *
24052537 CAGCACATAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGACTGGCTCAGC
63 CAGCAC---GAGGGGGACCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTTCGACCGGCTGAGC
* * * *
24052602 ACCCGCACGCTCGTTTCGTGGGTTGACTTAT
125 GCCCGCATGCTCGTTTCGTGGGTTGGCTTAG
*
24052633 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGC-GCAGTAGGATCGACA
* * ** * * * * * *
24052698 GCACGCAGGGGGATCGGGTCAATCCCCAGCTTATGTATTCTACCTCTCCGGCCGACTGAGCGCCC
65 GCACG-AGGGGGACCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTTCGACCGGCTGAGCGCCC
*
24052763 ACATGCTCGTTTCGTGGGTTGGCTTAG
129 GCATGCTCGTTTCGTGGGTTGGCTTAG
*
24052790 GCATACGGAGTTCATCCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
24052817 CATACAGAGT
Statistics
Matches: 270, Mismatches: 63, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 95 0.35
158 50 0.19
159 118 0.44
160 5 0.02
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGCAGTAGGATCGACAG
CACGAGGGGGACCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGC
ATGCTCGTTTCGTGGGTTGGCTTAG
Found at i:24052826 original size:26 final size:26
Alignment explanation
Indices: 24052790--24052842 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24052780 GTTGGCTTAG
*
24052790 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24052816 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24052842 G
1 G
24052843 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24052975 original size:184 final size:183
Alignment explanation
Indices: 24052633--24053185 Score: 766
Period size: 184 Copynumber: 3.0 Consensus size: 183
24052623 GTTGACTTAT
* * **
24052633 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCGGTA
* * ** * *
24052698 GCACGCA-GGGGGATCGGGTCAATCCCCAGCTTATGTATTCTACCTCTCCGGCCGACTGAGCGCC
66 GCACACAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCC
* *
24052762 CACATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAA
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-CCCAGTCTAA
* * * *
24052816 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGCAGCAGGATCGGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCGGTA
* * * * * *
24052881 GCACCCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCC
66 GCACACAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCC
* * *
24052946 CGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTGATCTAA
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCAG-TCTAA
24053000 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCGGTA
* * * *
24053065 GCACACAGGGGAGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACT
66 GCACACAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCC
* * * * *
24053130 CGTACGCTTGTTTCGTGGGTTGGCTTAGTCATACGGAGTACATTCCACGTCTAA
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCA-GTCTAA
24053184 GC
1 GC
24053186 CCTAGTCGGA
Statistics
Matches: 321, Mismatches: 46, Indels: 5
0.86 0.12 0.01
Matches are distributed among these distances:
183 67 0.21
184 253 0.79
185 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCGGTA
GCACACAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCAGTCTAA
Found at i:24053024 original size:26 final size:26
Alignment explanation
Indices: 24052974--24053026 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24052964 GTTGACTTAG
*
24052974 GCATACGGAGTTCATCCCTGATCTAA
1 GCATACGGAGTTCATCCCAGATCTAA
24053000 GCATACGGAGTTCATTCCCAG-TCTAA
1 GCATACGGAGTTCA-TCCCAGATCTAA
24053026 G
1 G
24053027 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAGATCTAA
Found at i:24053294 original size:343 final size:340
Alignment explanation
Indices: 24052881--24054053 Score: 1139
Period size: 343 Copynumber: 3.4 Consensus size: 340
24052871 AGGATCGGTG
* * **
24052881 GCACCCAG-GGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGC
1 GCACGCAGAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCTGATCGGCTGAGCGC
*
24052945 CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCTGATCTAAGCATACGGA
66 CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAG-TCTAAGCATACGGA
* *
24053009 GTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCGGTAGCACACAGG
130 GTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGATAGCACA-AGG
* ** *
24053074 GGAGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACTCGTACGCTT
194 GGAGATCGGGTCGATCCCC-GCTTGCGCATTTTGCCTCTCCGGTCGGTTGAGCACTCGCACG-TT
* * * *
24053139 GTTTCGTGGGTTGGCTTAGTCATACGGAGTACATTCCACGTCTAAGCCCTAGTCGGATTGAGGGT
257 ATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCTAGCCGGATTGAGGGT
* *
24053204 TGCGGTAGTGGGATCGACA
322 TGCGGTAGTGGGATTGGCA
* * * *
24053223 GCACGTAGAGGGGGATC-AGGCTGATCCCCGACTTGCGTATTATGCCTCTCTGATCGGCTGAGCG
1 GCACGCAGAGGGGGATCGA-GCCGATCCCCGGCTTGCGCATTATGCCTCTCTGATCGGCTGAGCG
* * * *
24053287 CCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGAA
65 CCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
* * * * *
24053352 ATTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGGTAGCAGGATCGATAGCACGTAGG
130 GTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGATAGCAC-AAGG
* * * * **
24053417 GGAGATTGGGTCGATCCTCGGCTTGCGTATTTTGCCTCT-CGATCGGTTGAGTTCTCGCACGTTC
194 GGAGATCGGGTCGATCC-CCGCTTGCGCATTTTGCCTCTCCGGTCGGTTGAGCACTCGCACGTT-
** *
24053481 ATTTTATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCTAGCCGGATCGAGGGT
257 ATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCTAGCCGGATTGAGGG-
* *
24053546 TATGGCAGCAGTACCGGTAGTGGGGTTGGTA
321 T-T-------G---CGGTAGTGGGATTGGCA
** ** *
24053577 GCTTGCAGAGGGGGA-CTGAGCTAATCCTCGG-TCTGCGCATTATGCCTCTTCGGCTGGCCTTTT
1 GCACGCAGAGGGGGATC-GAGCCGATCCCCGGCT-TGCGCATTATG-C-C-T---CT---C---T
* * * *
24053640 CGATCGGCTGAGCGCTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACTGAGTTCATCCCCAG
52 -GATCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAG
* * * *
24053705 TCTAAGCATACGGTGTTCATTCCTAGTCTAAGATCAGATCGGA-CTGAGCGTTGCGGCAGCAGGA
116 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGGCAGCAGGA
* * * *
24053769 TCGACAGCACGTAAGGGG-GACCGAGTCGATCCCCGACTTGCACATTTTGCCTCTCCGGTCGGTT
180 TCGATAGCAC--AAGGGGAGATCGGGTCGATCCCCG-CTTGCGCATTTTGCCTCTCCGGTCGGTT
* * *
24053833 GAGCACCCGCACGTCTATTTCGTGGGTTGGCTTAGGCATAGGGAGGT-CATTCCATGTCTACGAC
242 GAGCACTCGCACGT-TATTTCGTGGGTTGGCTTAGGCATACGGA-GTACATTCCATGTCTAAG-C
* * * *
24053897 CC-AACCAG-TCTGAGGGTT-CTGGTAGCGGGATTGGCC
304 CCTAGCCGGAT-TGAGGGTTGC-GGTAGTGGGATTGGCA
* * * * * **
24053933 GTACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCT-TCATCCGGCTCAGTA
1 GCACGCAGAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCTGAT-CGGCTGAGCG
* * ** * * *
24053997 CCCGCACACTTGTTTCGTGGGTTTACTTATACTTACAGAGTTCATTCCCAGTCTAAG
65 CCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
24054054 ATCGGACTGG
Statistics
Matches: 675, Mismatches: 110, Indels: 91
0.77 0.13 0.10
Matches are distributed among these distances:
341 2 0.00
342 82 0.12
343 248 0.37
344 6 0.01
350 2 0.00
351 1 0.00
353 3 0.00
354 45 0.07
355 4 0.01
356 45 0.07
357 3 0.00
360 2 0.00
363 1 0.00
366 5 0.01
367 148 0.22
368 72 0.11
369 6 0.01
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (340 bp):
GCACGCAGAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCTGATCGGCTGAGCGC
CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGATAGCACAAGGGG
AGATCGGGTCGATCCCCGCTTGCGCATTTTGCCTCTCCGGTCGGTTGAGCACTCGCACGTTATTT
CGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCTAGCCGGATTGAGGGTTGCG
GTAGTGGGATTGGCA
Found at i:24053347 original size:26 final size:26
Alignment explanation
Indices: 24053317--24053369 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24053307 GTTGACTTAG
* *
24053317 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
* *
24053343 GCATATGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
24053369 G
1 G
24053370 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAGTCTAA
Found at i:24053722 original size:26 final size:26
Alignment explanation
Indices: 24053684--24053736 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24053674 GTTGACTTAG
*
24053684 GCATACTGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
24053710 GCATACGGTGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24053736 G
1 G
24053737 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24054324 original size:11 final size:11
Alignment explanation
Indices: 24054308--24054333 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
24054298 CCCGGGGCAC
24054308 CATCGTCAGAG
1 CATCGTCAGAG
24054319 CATCGTCAGAG
1 CATCGTCAGAG
24054330 CATC
1 CATC
24054334 ATCGAAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (11 bp):
CATCGTCAGAG
Found at i:24054857 original size:26 final size:25
Alignment explanation
Indices: 24054828--24054879 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
24054818 GTTGACTTAG
*
24054828 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATA-AGAGTTCATCCCCAGTCTAA
* *
24054854 GCATATGAGTTCATTCCCAGTCTAA
1 GCATAAGAGTTCATCCCCAGTCTAA
24054879 G
1 G
24054880 ATCAGGCCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (25 bp):
GCATAAGAGTTCATCCCCAGTCTAA
Found at i:24055237 original size:159 final size:158
Alignment explanation
Indices: 24054860--24055345 Score: 365
Period size: 158 Copynumber: 3.1 Consensus size: 158
24054850 CTAAGCATAT
* * * * * ** *
24054860 GAGTTCATTCCCAGTCTAAGATCAGG-CCAGA-CTGAGGGTTGCGGCAACAGGA-TAGGCAGCAC
1 GAGTTCATTCCCAGTCCAAGATC-GGATCAGATC-GATGGTTGCGGCAGCAGGACCA-ATAGCAT
* * * * * * * * *
24054922 GCAGGGGGGACCAGGTCGATCCTCGACTTACGCGTTCTACCTCTCC-AGTCGACTGAGCGCCCGC
63 GCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATACCTCTCCGA-CCGGCTAAGCGCCCGC
* * * * * *
24054986 ATGCCCATTTCGTGCGTTGGCTTAGGCATAGG
127 ACGCTCATTTCGTGGGTTGACTTAGCCATACG
* * * ** * * * * **
24055018 GAGCTCATT-CCATGTCTAAG-CCCCAGTCGGACCGAAGGTTGTGGCAGCAGGACCGGTAGCATG
1 GAGTTCATTCCCA-GTCCAAGATCGGA-TCAGATCGATGGTTGCGGCAGCAGGACCAATAGCATG
* * * ** * *
24055081 CAGAGGGGGATCGGG-CTGATCCCCGGCTTGTGCATTATGCCTCTTTGATCGGCTAAGTGCCCGC
64 CAG-GGGGGACCGGGTC-GATCCCCGGCTTGCGCATTATACCTCTCCGACCGGCTAAGCGCCCGC
*
24055145 ACGCTCATTTCGTGGGTTGACTTATCCATACG
127 ACGCTCATTTCGTGGGTTGACTTAGCCATACG
* *
24055177 GAGTTCATTCCCAGTCCAAGATCGGATCAGATCGATGGTTGCGGCAGCAGGATCAATAGCATGTA
1 GAGTTCATTCCCAGTCCAAGATCGGATCAGATCGATGGTTGCGGCAGCAGGACCAATAGCATGCA
* * * * * * *
24055242 GGGGGGACCGGGTCGATCCCCTGCTTGCGTATTCTACCTCTCCGGCCGGCTGAGCGCCCGCCCGT
66 GGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATACCTCTCCGACCGGCTAAGCGCCCGCACGC
* * *
24055307 TCGTTTCGTGGGTTGGCTTAGGCATACG
131 TCATTTCGTGGGTTGACTTAGCCATACG
24055335 GAGTTCATTCC
1 GAGTTCATTCC
24055346 ATGTCTAAGC
Statistics
Matches: 252, Mismatches: 65, Indels: 22
0.74 0.19 0.06
Matches are distributed among these distances:
157 4 0.02
158 127 0.50
159 115 0.46
160 6 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCCAAGATCGGATCAGATCGATGGTTGCGGCAGCAGGACCAATAGCATGCA
GGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATACCTCTCCGACCGGCTAAGCGCCCGCACGC
TCATTTCGTGGGTTGACTTAGCCATACG
Found at i:24055378 original size:26 final size:26
Alignment explanation
Indices: 24055328--24055380 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24055318 GTTGGCTTAG
* *
24055328 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24055354 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24055380 G
1 G
24055381 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24056705 original size:26 final size:26
Alignment explanation
Indices: 24056655--24056707 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24056645 GTTGGCTTAG
* *
24056655 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24056681 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24056707 G
1 G
24056708 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24057435 original size:26 final size:26
Alignment explanation
Indices: 24057390--24057442 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24057380 GTTGACTTAG
* *
24057390 GCATACGGAGTTCACCCCCAGTCTAA
1 GCATACAGAGTTCACCCCCAATCTAA
**
24057416 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCACCCCCAATCTAA
24057442 G
1 G
24057443 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCACCCCCAATCTAA
Found at i:24057797 original size:159 final size:158
Alignment explanation
Indices: 24057417--24057916 Score: 386
Period size: 159 Copynumber: 3.2 Consensus size: 158
24057407 CCAGTCTAAG
* * * *
24057417 CATACAGAGTTCATTCCCAATCTAAGATCAGA-TCAGA-TCGAGGGTTGCGACAGCAGGATCGAC
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACT-GAGGGTTGCGACAGCAGGATCGAT
* * * * * * *
24057480 AGCATGCAGGGGGAAGCGAGTCGATCCCCAGCTTACGCATTCTGTCTCTCCGGCCGGTTGAGCGC
64 AGCACGCAGGGGGAACCGAGCCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGGTTCAGCGC
* * * *
24057545 CCGCACTCCCATTTCGTGTGTTGGCTTAGG
129 CCGCACGCCCATTTCGTGGGTTGACTTAGA
* * ** * * * * *
24057575 CATAGGGAGCTCATT-CCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGCGGGACCGAT
1 CATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGACTGAGGGTTGCGACAGCAGGATCGAT
* * * * *
24057638 AGCACGCAGAGGGGGACCGAGCCGATCCCCAGCTTGCGTATTATGCCTCTTCGATCGGTTCAGCG
64 AGCACGCAG-GGGGAACCGAGCCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGGTTCAGCG
* * * *
24057703 GCTGCACGCTCATTTCGTGGGTTGACTTATA
128 CCCGCACGCCCATTTCGTGGGTTGACTTAGA
** *
24057734 CATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCAACAGCAGGATCGATAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGACAGCAGGATCGATAG
* * * * * ** * * * * *
24057799 CACGAAGGAGGG-ATCGGGTCGATCCCTAGCTTTTG-AGTCTACCTCTCC-AGCCGGCTGAGCGC
66 CACGCAGG-GGGAACCGAGCCGATCCCCAGCTTACGCATTATGCCTCTCCGA-CCGGTTCAGCGC
** * * * *
24057861 CCGCACGTTCGTTTTGTGGGTTGGCTTAGG
129 CCGCACGCCCATTTCGTGGGTTGACTTAGA
24057891 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
24057917 CATACGAAGC
Statistics
Matches: 265, Mismatches: 67, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
156 4 0.02
157 65 0.25
158 66 0.25
159 127 0.48
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGACAGCAGGATCGATAG
CACGCAGGGGGAACCGAGCCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGGTTCAGCGCCC
GCACGCCCATTTCGTGGGTTGACTTAGA
Found at i:24059813 original size:26 final size:26
Alignment explanation
Indices: 24059783--24059835 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24059773 GTTGACTTAG
24059783 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
24059809 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24059835 G
1 G
24059836 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24062087 original size:26 final size:26
Alignment explanation
Indices: 24062037--24062089 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24062027 GTTAACTTAG
* *
24062037 GCATACGGAGTTCATCCTCAGTCTAA
1 GCATACGAAGTTCATCCTCAATCTAA
24062063 GCATACGAAGTTCATTCC-CAATCTAA
1 GCATACGAAGTTCA-TCCTCAATCTAA
24062089 G
1 G
24062090 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCTCAATCTAA
Found at i:24063149 original size:26 final size:26
Alignment explanation
Indices: 24063099--24063151 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24063089 GTTAACTTAG
* *
24063099 GCATACGGAGTTCATCCTCAGTCTAA
1 GCATACGAAGTTCATCCTCAATCTAA
24063125 GCATACGAAGTTCATTCC-CAATCTAA
1 GCATACGAAGTTCA-TCCTCAATCTAA
24063151 G
1 G
24063152 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCTCAATCTAA
Found at i:24064307 original size:26 final size:26
Alignment explanation
Indices: 24064271--24064326 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
24064261 TGGGTTGATT
24064271 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
*
24064297 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
24064323 TAAG
1 TAAG
24064327 ATCAGACCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:24064485 original size:184 final size:184
Alignment explanation
Indices: 24064123--24064485 Score: 419
Period size: 184 Copynumber: 2.0 Consensus size: 184
24064113 TGAGCATATA
* * * * * * *
24064123 GAGTTCATCCCCAGTCTAAGATCGGGCCGGATCGAGCATTGCGGCAGTAGGATCGATAGCACGCA
1 GAGTTCATCCCCAGTCTAAGATCAGACCAGATCGAGCATTACGACAGCAGGATCGACAGCACGCA
* * * * * * *
24064188 GGAGGGATCGGCCTGATCCCTGGCTTGCGCATTCTTACTCTCTGGTCGACTGAGTGCCCGCACGC
66 GGAGGGACCGGCCTGATCCCCGCCTTGCACATTCTTACTCTCCGATCGACTGAGCGCCCGCACGC
* * * *
24064253 TCGTTTCGTGGGTTGATTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACG
131 TCGTTTCGTGGGTTGACTTAAGCATAAGGAGTACATCCACAGTCTAAGCATACG
* **
24064307 GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGCAGGATCGACAGCACGCC
1 GAGTTCATCCCCAGTCTAAGATCAGACCAGATCGAGCATTACGACAGCAGGATCGACAGCACG-C
* * *
24064372 TGG-GGGACCAGGTC-GATCCCCGCCTTGCACATTC-TACCTCTCCGATCGGCTGAGCGCCCGCA
65 AGGAGGGACC-GGCCTGATCCCCGCCTTGCACATTCTTA-CTCTCCGATCGACTGAGCGCCCGCA
* * *
24064434 CGCTCGTTTCGTGGGTTGGCTTAGGCTTAAGGAGTACATTCCACA-TCTAAGC
128 CGCTCGTTTCGTGGGTTGACTTAAGCATAAGGAGTACA-TCCACAGTCTAAGC
24064486 CCCAGCCAGA
Statistics
Matches: 148, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
183 2 0.01
184 135 0.91
185 11 0.07
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (184 bp):
GAGTTCATCCCCAGTCTAAGATCAGACCAGATCGAGCATTACGACAGCAGGATCGACAGCACGCA
GGAGGGACCGGCCTGATCCCCGCCTTGCACATTCTTACTCTCCGATCGACTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAAGCATAAGGAGTACATCCACAGTCTAAGCATACG
Found at i:24064672 original size:26 final size:26
Alignment explanation
Indices: 24064642--24064694 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24064632 GTTGACTTAG
24064642 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
24064668 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24064694 G
1 G
24064695 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24064929 original size:368 final size:367
Alignment explanation
Indices: 24064225--24065248 Score: 1347
Period size: 368 Copynumber: 2.8 Consensus size: 367
24064215 CGCATTCTTA
* * * * *
24064225 CTCTCTGGTCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGATTTAAGCATACGGAGTTCATC
1 CTCTCCGGTCGGCTGAGTACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATC
*
24064290 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGC
66 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTACGACAGC
* * * * *
24064355 AGGATCGACAGCACGCCTGGGGGACCAGGTCGATCCCCGCCTTGCACATTCTACCTCTCCGATCG
131 AGGATCGACAGCACG-CAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCG
* * * **
24064420 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCTTAAGGAGTACATTCCACATCTAAG
195 GCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGACTACATTCCATGTCTAAG
* * * *
24064485 CCCCAGCCAGACCAAGGGTTGTGGCAGCAGAACCGGTAACGGGATCGACAGCACACAGAGGGTGG
260 CCCCAGCCAGACCGAGGGTTGTGGTAGCAGAACCGATAACAGGATCGACAGCACACAGAGGGTGG
* *
24064550 CCGGGCTGATCCTCAGCTTCCGCATTATGCCTCTCCGGTCAAC
325 CCGGACTGATCCTCAGCTTACGCATTATGCCTCTCCGGTCAAC
* * * *
24064593 CTCTCCGGTCGGCTCAGTACCCTCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATC
1 CTCTCCGGTCGGCTGAGTACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATC
24064658 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGATCGAAGGTTACGACAG
66 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGATCGAAGGTTACGACAG
* * * * * * * * *
24064722 CAGCATCGATAGTATGCAGAGGGGACCAGGCCGATCTCCGGCTTGTGCATTCTGCCTGTCTGACC
130 CAGGATCGACAGCACGCAG-GGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATC
* * *
24064787 GGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGGTTAGGCATATGGACTACATTCCATGCCTAA
194 GGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGACTACATTCCATGTCTAA
* * *
24064852 GCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACCGATAGCAGGATCGACAGCACGCAGAGGG-G
259 GCCCCAGCCAGACCGAGGGTTGTGGTAGCAGAACCGATAACAGGATCGACAGCACACAGAGGGTG
* * ***
24064916 GACCGGACTGATCCTCGGCTTATGCATTATGCCTCTCCGGTTGGC
324 G-CCGGACTGATCCTCAGCTTACGCATTATGCCTCTCCGGTCAAC
* * * *
24064961 CTCTTCGATCGGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATC
1 CTCTCCGGTCGGCTGAGTACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATC
* * * *
24065026 CCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCAAATTGAAGGTTGCGACAGC
66 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTACGACAGC
* * *
24065091 AGGATAGGCAGCACGCAGGGGGGAACC-GGACCGATCCCCAGCTTGCGCATTCTGCCTCTCCGAT
131 AGGATCGACAGCACGCA-GGGGG-ACCAGG-CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAT
* * * * * * * *
24065155 CGGCTAAACT-CCCGCATGCCCATTTCGTGTGTTGGCTTAAGCATAGGGAGCT-CATTCCATGTC
193 CGGCT-GAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGA-CTACATTCCATGTC
24065218 TAAGCCCCAGCCAGACCGAGGGTTGTGGTAG
256 TAAGCCCCAGCCAGACCGAGGGTTGTGGTAG
24065249 TGAGACCGAC
Statistics
Matches: 567, Mismatches: 80, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
367 5 0.01
368 447 0.79
369 111 0.20
370 4 0.01
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (367 bp):
CTCTCCGGTCGGCTGAGTACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATC
CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTACGACAGC
AGGATCGACAGCACGCAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGG
CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGACTACATTCCATGTCTAAGC
CCCAGCCAGACCGAGGGTTGTGGTAGCAGAACCGATAACAGGATCGACAGCACACAGAGGGTGGC
CGGACTGATCCTCAGCTTACGCATTATGCCTCTCCGGTCAAC
Found at i:24065039 original size:26 final size:26
Alignment explanation
Indices: 24065010--24065062 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24065000 GTTGACTTAG
24065010 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24065036 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24065062 G
1 G
24065063 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24065650 original size:11 final size:11
Alignment explanation
Indices: 24065634--24065659 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
24065624 CCCAGGACAC
24065634 CATCGTCGAAG
1 CATCGTCGAAG
24065645 CATCGTCGAAG
1 CATCGTCGAAG
24065656 CATC
1 CATC
24065660 ATCGGAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (11 bp):
CATCGTCGAAG
Found at i:24065795 original size:26 final size:26
Alignment explanation
Indices: 24065765--24065817 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24065755 GTTGACTTAG
* *
24065765 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
24065791 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
24065817 G
1 G
24065818 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:24066162 original size:26 final size:26
Alignment explanation
Indices: 24066133--24066185 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24066123 GTTGACTTAG
24066133 GCATACGGAGTTCATGCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
*
24066159 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
24066185 G
1 G
24066186 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATGCCCAGTCTAA
Found at i:24066427 original size:368 final size:368
Alignment explanation
Indices: 24065725--24073059 Score: 3370
Period size: 368 Copynumber: 19.8 Consensus size: 368
24065715 CCTCTCTAGT
* * *
24065725 CGGCTGAGCGGCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCC-GTCT
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCCAGTCT
* * * * * *
24065789 AAGCATACAGAGTTCATTCCCAGTCTAAGAT-TGAACCGGATCGAGGGTTGTGTCAGTAGGATCG
65 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGATCGAAGGTTGCGACAGCAGGATCG
* ** * * * * ** * * * * ** * *
24065853 GTAGCACATAGGGGGGATTGAGCCAATCCCTGGCTTGTGCATTCTACCTCTCTGGCCGGTTCAGT
129 ATAGCACGCAGGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGACGACTGAGC
* * * *
24065918 GCCCACACGTTCGTTTCGTGGGTTAGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGC
194 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGC
* * * * * * *
24065983 CGGATCGAGGGTTGTGGTAGCAAGACTGACAGC-GAGATCGACAGCATGCAGAGGGGGA-TCGAG
259 CAGACCGAGGGTTGTGGTAGCAGGACCGGCAGCAG-GATCGACAGCACGCAGAGGGGGACT-GGG
** * *
24066046 CTGATTGCTGGCTTGCGCATTATGCCTCTCTGACTGGCCTCTCCGAC
322 CTGATCCCTGGCTTACGCATTATGCCTCTCCGACTGGCCTCTCCGAC
* * *
24066093 CGGCTAAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATGCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
*
24066158 AGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGATCGAAAGTTGC-AGCAGCAGGATCG
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGATCGAAGGTTGCGA-CAGCAGGATCG
* * * * * *
24066221 ACAGCACGTAGGGGGGACTGGG-CTAATCCCCGGCTTGCGCATTCTACCTCTCCGGATGACTGAG
129 ATAGCACGCAGGGGGGACTGGGTC-GATCCCCAGCTTGCGCATTCTGCCTCTCCGGACGACTGAG
* * * * * *
24066285 CACCCACATGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCTAG
193 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAG
* * * ** *
24066350 TCGGACCGAGGGTTGTGGTAGCAGGACTGGCAGCAGGATCGGTAGCACGCAGAGAGGGACTGGGC
258 CCAGACCGAGGGTTGTGGTAGCAGGACCGGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGGC
* * * *
24066415 TGATCCCTGGCTTGCGCATTATGCCTCTCTGACCGGCCTCTTCGAC
323 TGATCCCTGGCTTACGCATTATGCCTCTCCGACTGGCCTCTCCGAC
* * * * * * *
24066461 CGACTGAGCGCCCACACGCTCGTTTCATAGGTTGACTGAGGCATACGGAGTTCATCCCCAATTTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * ** * ** *
24066526 AGCATACGGAGTTCATTACCAATCTAAGATCAGATTGGATTGAAGGTTGCGACAATAGGATCGAC
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGACAGCAGGATCGAT
* * * *
24066591 AGCACGCAGGGGGGA-TCGGGTCGATCCCC-GACTTGTGCATTCTGCCTCTTCGGTCGGCTGAGC
131 AGCACGCAGGGGGGACT-GGGTCGATCCCCAG-CTTGCGCATTCTGCCTCTCCGGACGACTGAGC
* * * * *
24066654 GCCCGTACGTTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCCAAC
194 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGC
** * * ** * * *
24066719 CAGACTAAGGGTTATGGTAGCAAGACCGGCAGTGGGATCGACAGTACGTAGAGGGGGACCGGGCT
259 CAGACCGAGGGTTGTGGTAGCAGGACCGGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGGCT
* * * *
24066784 GATCCCTGGCTTATGCATTATGCCTCTCCAACTGGCATCT-CTAGC
324 GATCCCTGGCTTACGCATTATGCCTCTCCGACTGGCCTCTCCGA-C
* * * * * *
24066829 CGGCTGAGTGCCCGCAAGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTC
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * * * * *
24066894 AGCATACGGAGTTTATTCCCAGTCTAATATTAGACC-GAACTTAGGGTTGCGACAGTAGGATC-A
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAAGGTTGCGACAGCAGGATCGA
* * * * * *
24066957 GTAGCACGTAGGGGGGATTGGGTCGATCCTCAGCTTACGCATTCT-CTCTCTCTGGTC-AGCTGA
130 -TAGCACGCAGGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGC-CTCTCCGGACGA-CTGA
* * * ** * * * **
24067020 GCACCCGCACACCCGTTTCGTGCATTGGCTTAGGCATAGGGAGCT-CGTTCCATGTCTAAGCAAC
192 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCCC
*** ** * * * ** ** *
24067084 AGCCAGACCG-GCAGCACGCAG-AGGAAGACTGGGCCATAAAAATCG-CATTGGCATGGCAGAAA
256 AGCCAGACCGAG--GGTTGTGGTAGCAGGAC-CGG-CAGCAGGATCGACA---GCA-CGCAG---
* ** * * * * *** * * * *
24067146 TATGAAGA-TGTGCTTGAACCC--ACCTAC-CACCCGTTCGATCCCCGACTTGCGCATCCTGCC-
310 -AGGGGGACTGGGC-TGATCCCTGGCTTACGCA-TTATGC-CTCTCCGAC-TG-GCCT-CT-CCG
24067206 AC
367 AC
* * * *
24067208 TCTAGTTGGCTGAGCACTCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATCCCC
1 -C-----GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCC
* * * * *
24067273 AGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAACAGG
60 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGACAGCAGG
* * * * * * * *
24067338 ATCGGTAGCATGTC-TGGGGGA-TCGAGCCGATCCCCACCTTGCGCATTCTGCCTCTCC-AACCA
125 ATCGATAGCACG-CAGGGGGGACT-GGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGA-CG
* * * * *
24067400 ACTGGGCGCCCGTAGGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTACATTCCACGTCTAAA
187 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAG
* * * * * * * * *
24067465 CCCCAGTCGGACCGAGGGTTGTGGTAGTAAGACTGGCAACGGGATCGACAGCATGCAGAGGGTGA
252 CCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACCGGCAGCAGGATCGACAGCACGCAGAGGGGGA
* * * * * *
24067530 -TCGGGCTGAT-CCTCGGCGTCCGCATTATGCCTCTCCG-GTCAGCCTTTCCGGC
317 CT-GGGCTGATCCCT-GGCTTACGCATTATGCCTCTCCGACT-GGCCTCTCCGAC
* * * * * *
24067582 CGACTGAGCACCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
** * * * *
24067647 AGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGACAGCAGGATTGGT
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGACAGCAGGATCGAT
* * * ** * *
24067712 AGCATGTAGGGGGGACCGGACCGATCCCCAGCTTGTGCATTCTACCTCTCC-GACCGACTGAGCG
131 AGCACGCAGGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGA-CGACTGAGCG
* * * *
24067776 CCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTACATTCCATGTCTAAGCCCCAGTC
195 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCC
* * * * ** **
24067841 GGACCGAGGGTTGTGGTAGCAGGACCGACAACGGGATCGGTAGCACGCAGAGGGGGA-TCGAACT
260 AGACCGAGGGTTGTGGTAGCAGGACCGGCAGCAGGATCGACAGCACGCAGAGGGGGACT-GGGCT
* * ** *
24067905 GATCCCCGACTTACGCATTATGCCTCTCCGGTTGGCCTCTTCGAC
324 GATCCCTGGCTTACGCATTATGCCTCTCCGACTGGCCTCTCCGAC
* * * * *
24067950 CAGTTAAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * ** * *
24068015 AGCATACGGAGTTCATAT-CCAGTCTAAGATCAGATCGGATCGAGGGTTACGGTAACAGGATCGG
66 AGCATACGGAGTTCAT-TCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGACAGCAGGATCGA
* * *** * * * *
24068079 TAGCACACATGGGGGACCAAGTCAATCGCCAGCTTGCGCATTCTGTCTCTCCGGCCGACTGAGCG
130 TAGCACGCAGGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGACGACTGAGCG
* * * * * * *
24068144 CTCGCACGTTCATTTTGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGTC
195 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCC
* * * * * * ** * * * *
24068209 GGACCGAGGGTTATGGCAGCAGGACCAGCAGCGGGATTGGTAACACGTAGAGGGGGACCGAGCTG
260 AGACCGAGGGTTGTGGTAGCAGGACCGGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGGCTG
* * * * *
24068274 ATCCCTGGCTTGCACATTATGCCTCTCCGACTAGCCACTCC-AGT
325 ATCCCTGGCTTACGCATTATGCCTCTCCGACTGGCCTCTCCGA-C
* * *
24068318 CGGTTGAGTGCCCGCACGCTCGTTTCGT-GGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * * *
24068382 AGCATACGAAATTCATTCCCAGTCTAAGATCGGATCGGATC-AAGGGTTGCGGCAGCAGGATCGA
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAA-GGTTGCGACAGCAGGATCGA
* ** ** * *
24068446 CAGCACGCCTGGGGGACCAGGTCGAGCCCC-GCCTTGCGCATTCTACCTCTCC-GATCGACTGAG
130 TAGCACGCAGGGGGGACTGGGTCGATCCCCAG-CTTGCGCATTCTGCCTCTCCGGA-CGACTGAG
* *
24068509 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCTTAAGGAGTACATTCCACGTCTAAGCCCCAG
193 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAG
* * * * * * *
24068574 CCAGACCAAGGGTTGTGGCAGCAGAACCGGTAACAGGATCGACAGCACACAGAGGGTGG-CCGGG
258 CCAGACCGAGGGTTGTGGTAGCAGGACCGGCAGCAGGATCGACAGCACGCAGAGGG-GGACTGGG
* * * ** **
24068638 CTGAT-CCTCAGCTTCCGCATTATGCCTCTCCG-GTCAACCTCTCCGGT
322 CTGATCCCT-GGCTTACGCATTATGCCTCTCCGACT-GGCCTCTCCGAC
* *** * * *
24068685 CGGCTCAGTATCCTCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * *
24068750 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAAGGTTACGACAGCAGCATCGAT
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGACAGCAGGATCGAT
* * ** * * * * * * *
24068815 AGCATGCAGAGGGGACCAGGTCGATCTCCGGCTTGTGCATTCTGCCTGT-CTGACCGGCTGAGTG
131 AGCACGCAGGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGA-CGACTGAGCG
* * * * *
24068879 CCCGCACGCTCGTTTCGTGGGTTGGGTTAGGCATATGGACTACATTCCATGCCTAAGCCCCAGCC
195 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCC
** ** *
24068944 AGACCGAGGGTTGTGGTAGCAGGACCGATAGCAGGATCGACAGCACGCAGAGGGGGACCAGACTG
260 AGACCGAGGGTTGTGGTAGCAGGACCGGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGGCTG
* ** * *
24069009 AT-CCTCGGCTTATGCATTATGCCTCTCCGGTTGGCCTCTTCGAT
325 ATCCCT-GGCTTACGCATTATGCCTCTCCGACTGGCCTCTCCGAC
* *
24069053 CGGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * ** * * **
24069118 AGCATGCGGAGTTCATTCCCAGTCTAAGATCAAACCAAATTGAAGGTTGCGACAGCAGGATAGGC
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGACAGCAGGATCGAT
* * * * *
24069183 AGCACGCAGGGGGGAACCGGATCGATCCCCAGCTTGCGCATTCTGCCTCTCC-GACCGGCTAAAC
131 AGCACGCAGGGGGG-ACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGA-CGACTGAGC
* * * * * * * *
24069247 TCCCGCATGCCCATTTCGTGTGTTGGCTTAAGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAG
194 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCCCAG
* * *
24069311 CCAGACCGAGGGTTGTGGTAG-TGAGACC-G-A-CAGCAT-G-CAG-A---AGA---GGATTGGG
258 CCAGACCGAGGGTTGTGGTAGCAG-GACCGGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGG
* * ** * *
24069363 CCGATCCCCGGCTTGTGCATTATGCCTCTTCGA-TTG-C-CT-C-A-
322 CTGATCCCTGGCTTACGCATTATGCCTCTCCGACTGGCCTCTCCGAC
* * * * **
24069404 --G-T----GCCCGCACGCTCGTTTCATGGGTTGATTTATGCATACGGAGTTCATTCCTGGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* *
24069462 AG-AT-C---G---A-----A--CT--G-T---ACC-GA--G--GGTTGCGATAGCAGGATCGAC
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGACAGCAGGATCGAT
** * * * ** *
24069501 AGCACGCAGGGGGGACCAGGTTGATCCCC-GACTTGCGCATTCTACCTCTTCGCCCGGCTGAGCG
131 AGCACGCAGGGGGGACTGGGTCGATCCCCAG-CTTGCGCATTCTGCCTCTCCGGACGACTGAGCG
* * * * * * **
24069565 CCTGCACAC-CTGTTTCGTGGGTTAGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGG
195 CCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGC---CCC
** * * * *** * *
24069629 AGCTCATTCCCA-----AT-CTA--A-GATTTTG-AGCCATGG-T-G-CA-CATGC----TGGG-
256 AGC-CAGACCGAGGGTTGTGGTAGCAGGA-CCGGCAG-CA-GGATCGACAGCACGCAGAGGGGGA
* ** *** * * * * *
24069675 CTCGGGCATG-T-GCTGG-TGCCGCATT-TTTTTCGCC--CAGG--ACACC-AT
317 CT-GGGC-TGATCCCTGGCTTACGCATTATGCCTCTCCGACTGGCCTCTCCGAC
* ** * * * * ** ** * *
24069720 CGTC-GAAGC-ATCGTCGAAGCATC--ATCG-GAGAGCCTAACCGATGGCATTGGGGGTTTGAT-
1 CGGCTG-AGCGCCCG-C-ACGC-TCGTTTCGTG-G-G-TTGACTTA-GGCATACGGAG-TTCATC
** * ** ** ** * *** * * * *
24069779 CCTTGACCTGTGCAT-CCTACCTC--T-CTAGTCGGCTGAGC-GGCCGTATGCTCGTTTCATGGG
57 CCCAG-TCTAAGCATACGGAGTTCATTCCCAGTC-TAAGATCAGACCG---GATCG----A-AGG
** * * *** * * *
24069839 TT--GACTTAGGCATACGGAGTTC-ATTCCCCGTCTA-AGCATACAGAGTTC-ATTCCCAG-TCT
112 TTGCGAC--A-GC--A-GGA--TCGATAGCACG-C-AGGGGGGACTG-GGTCGATCCCCAGCT-T
** ** * ** * * * * * * * ** * * *
24069898 AAG-A-T-TG---AACCGAATCGAGGGTTGTGTCAGTAGGATCGGTAGCACATAGGG-GGGATTG
165 GCGCATTCTGCCTCTCCGGA-CGACTG-AGCGCCCGCACGCTC-GT--TTCGT-GGGTTGGCTT-
* * * * * * ** * * ** *
24069956 AGCCAATCCCTGGCTTGTGCATTCTACCTCTCTGGCCGGTTCAGTGCC-CACACGTTCGTTTCGT
223 AGGC-AT-AC-GG--AGTACATTCCACGTCT-AAGCC---CCA--GCCAGAC-CG-AGGGTT-GT
* * * * * * ***
24070020 GGGTTAGCTTAGGCATACAGAGTACATTCCACG-TCTA-AGCCCCAGTCGGATCGAGGGTTGTGG
274 -GG-TAGC--AGG---ACCG-G--CA--GCAGGATCGACAG-CAC-G-CAGA--G-GGGGACTGG
* * * ** *
24070083 TAGCAAGA-CCGACAGTGAGATCGACAGCATGCAGAGGGGGATCGAGCTGATTGCTGGCTTGCAC
321 --GC-TGATCC--C--TG-GCT-TAC-GCAT-----------T--A--TGCCT-CT--C-CG-AC
*
24070147 ATTATGCCTCTCCGAC
356 --T-GGCCTCTCCGAC
* *** * * ** * * * * * ** * *
24070163 TGGCCTCTCCGACCGGCTAAG--CG-CCCGTACGCTCG-TTTCGTGGGT--TGATTTAGGCATAC
1 CGG-CTGAGCG-CCCGC-ACGCTCGTTTCGT-GGGTTGACTTAG-GCATACGGAGTT---CA---
*
24070222 GGAGTTCATGCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGATCGAAA
55 -----TC---CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGATCGAAG
* * * * * * *
24070286 GTTGCAACAGCAGGATTGACAGCACGCAGGGGGGACTGGG-CTAATCCCCGGCTTGGGCATTCTA
111 GTTGCGACAGCAGGATCGATAGCACGCAGGGGGGACTGGGTC-GATCCCCAGCTTGCGCATTCTG
* * * * *
24070350 CCTCTCCGGATGACTGAGCACCCACATGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTACAT
175 CCTCTCCGGACGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACAT
* * * * * **
24070415 TCCACATCTAAGCCCTAGTCGGACCGAGGGTTGTGGTAGCAGGACTGGCAGCAGGATCGGTAGCA
240 TCCACGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACCGGCAGCAGGATCGACAGCA
* * * * *
24070480 CGCAGAGAGGGACTGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCTGACCGGCCTCTTCGAC
305 CGCAGAGGGGGACTGGGCTGATCCCTGGCTTACGCATTATGCCTCTCCGACTGGCCTCTCCGAC
* * * * * * * *
24070544 ACGACTGAGCGCCCACACGCTCGTTTCATAGGTTGACTGAGGCATACGGAGTTCATCACCAATTT
1 -CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
* * * ** * **
24070609 AAGCATACGGAGTTCATTACCAATCTAAGATCATATTGGATTGAAGGTTGCGACAATAGGATCGA
65 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGACAGCAGGATCGA
* * * * * * *
24070674 CAGCACGCAGGGGGGATTGGGTCGATCCCC-GACTTGTGCATTTTGCCTCTTCGGTCGGCTGAGC
130 TAGCACGCAGGGGGGACTGGGTCGATCCCCAG-CTTGCGCATTCTGCCTCTCCGGACGACTGAGC
* * * *
24070738 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCCAAC
194 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGC
** * * * ** * * *
24070803 CAGACTAAGGGTTATGGTAGCAAGACCAGCAGTGGGATCGACAGTACGTAGAGGGGGACCGGGCT
259 CAGACCGAGGGTTGTGGTAGCAGGACCGGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGGCT
* * * * **
24070868 GATCCCTGGCTTATGCATTATGCCTCTCCAACTGGCATCTCTGGT
324 GATCCCTGGCTTACGCATTATGCCTCTCCGACTGGCCTCTCCGAC
* * * * * * *
24070913 CGGCTGAGTGCCCGCAAGCTCTTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTC
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * * * * *
24070978 AGCATACGGAGTTTATTCCCAGTCTAATATTAGACC-GAACTTAGGGTTGCGACAGTAGGATC-A
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAAGGTTGCGACAGCAGGATCGA
* * * * *
24071041 GTAGCACGCAGAGGGGATTGGGCCGATCCCCAGCTTACGCATTCT-CTCTCTCCGGTC-AGCTGA
130 -TAGCACGCAGGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGC-CTCTCCGGACGA-CTGA
* * * * * * * **
24071104 GCACCCGCACACCCGTTTCGTGCGTTGGCTTAGGCATAGGGAGCT-CGTTCCATGTCTAAGCAAC
192 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCCC
**** ** * * * ** ** *
24071168 AGCCAGACCG-GCAACACGCAG-AGGAAGACTGGGCCATAAAAATCG-CATTGGCATGGCAGAAA
256 AGCCAGACCGAG--GGTTGTGGTAGCAGGAC-CGG-CAGCAGGATCGACA---GCA-CGCAG---
* ** * * * * *** * * * *
24071230 TATGAAGA-TGTGCTTGAACCC--ACCTAC-CACCCGTTCGATCCCCGACTTGCGCATCCTGCC-
310 -AGGGGGACTGGGC-TGATCCCTGGCTTACGCA-TTATGC-CTCTCCGAC-TG-GCCT-CT-CCG
24071290 AC
367 AC
* * * *
24071292 TCTAGTTGGCTGAGCACTCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATCCCC
1 -C-----GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCC
* * *
24071357 AGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGG
60 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGACAGCAGG
* * * * * ** *
24071422 ATCGGTAGCACGTCA-GGGGGA-TCGGGCCGATCCCCACCTTGCGCATTTTGCCGCT-CTAACCA
125 ATCGATAGCACG-CAGGGGGGACT-GGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGACGA
* * ** *
24071484 GCTGAGCGCCCGTAGGCTCGTTTCGTGGGTTGGCTTAGGCATAAAGAGTACATTCCACGTCTAAA
188 -CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAG
* * * * * * * *
24071549 CCCCAGTCAGACCGAGGGTTGTGGTAGTAAGACTGGCAACGGGATCGACAGCATGCAGAGGGTGA
252 CCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACCGGCAGCAGGATCGACAGCACGCAGAGGGGGA
* * * *
24071614 -TCGGGCTGAT-CCTCGGCGT-CTGCATTATGCCTCTCCG-GTCAGCCT-TACCGGC
317 CT-GGGCTGATCCCT-GGCTTAC-GCATTATGCCTCTCCGACT-GGCCTCT-CCGAC
* * * * * *
24071666 CGACTGAGCACCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
** * * * * *
24071731 AGCATATAGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGTGACAGCAGGATTGGT
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGACAGCAGGATCGAT
* * ** * * *
24071796 AGCATGCAGGGGGGACCGGACCGATCCCCAGCTTGTGCATTCTACCTCTCC-GACCGACTGAGTG
131 AGCACGCAGGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGA-CGACTGAGCG
* * * *
24071860 CCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTACATTCCATGTCTAAGCCCCAGTC
195 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCC
* * * * * ** * **
24071925 GGATCGAGGGTTGTGGTAGCAGGACCGACAACGGGATCGGTAGCACGCAGAGGGGGACCGAACTG
260 AGACCGAGGGTTGTGGTAGCAGGACCGGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGGCTG
* * ** *
24071990 ATCCCCGACTTACGCATTATGCCTCTCCGGTTGGCCTCTTCGAC
325 ATCCCTGGCTTACGCATTATGCCTCTCCGACTGGCCTCTCCGAC
* * * * * *
24072034 CAGTTAAGCGCCCGCACGCTCGTTTCGTGGGTTGAGTTAGGCATACGGAATTCATCCCTAGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * ** ** *
24072099 AGCATACGGAGTTCATAT-CCAGTCTAAGATCGGATCGGATCG-AGAGTTACGGTAATAGGGTCG
66 AGCATACGGAGTTCAT-TCCCAGTCTAAGATCAGACCGGATCGAAG-GTTGCGACAGCAGGATCG
* * * *** * ** * *
24072162 GTAGCACACATGGGGGACCAAGTCAATTGCCAGCTTGCGCATTCTGTCTCTCCGGCCGACTGAGC
129 ATAGCACGCAGGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGACGACTGAGC
* * * * * * * *
24072227 GCTCGTACGTTCATTTTGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGT
194 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGC
* * * * * * * ** * * * *
24072292 CGGACCGAGGGTTATGGCAGCAGGACCAGTAGCGGGATTGGTAACACGTAGAGGGGGACCGAGCT
259 CAGACCGAGGGTTGTGGTAGCAGGACCGGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGGCT
* * * * *
24072357 GATCCCTGGCTTGCACATTATGCCTCTCCGACTAGCCACTCC-AGT
324 GATCCCTGGCTTACGCATTATGCCTCTCCGACTGGCCTCTCCGA-C
* * *
24072402 CGGTTGAGTGCCCGCACGCTCGTTTCGT-GGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * * * * * *
24072466 AGCATATGAAATTCATTCCCAGTCTAAGATCGGATCGGGTC-AAGGGATGCGGCAGCAGGATC-A
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAA-GGTTGCGACAGCAGGATCGA
* * * * * * * * * * *
24072529 GTAGCACGTAGAGGGGACCGAGCCGATCCTCAGCTTACGCATTCTGCCTCTTCGGTCGGCTGGGC
130 -TAGCACGCAGGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGACGACTGAGC
* * * * * *
24072594 GCCTGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTATATTCCACATCTAAACCCCAGT
194 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGC
* * ** * * * * * * * *
24072659 CAGACTGAGGGTTGCGACAGTACGACCAGCTGCGGGATCGACAGCATGCAGAGGGGGATTGAGCT
259 CAGACCGAGGGTTGTGGTAGCAGGACCGGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGGCT
** * * * **
24072724 GAT-CCTCGGCTTGTGCATTATGCCTCACCGGCCGGCCTCTCCGGT
324 GATCCCT-GGCTTACGCATTATGCCTCTCCGACTGGCCTCTCCGAC
* * * * *
24072769 CGGCTAAGTGCCCGCACGATCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCTGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * * * *
24072834 AGCATATGGAGTTCATTCCAAGTCTAAGATAAGACTGGATC-AAGGGTTGCGGCAGCAGGAT-TA
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAA-GGTTGCGACAGCAGGATCGA
* * * * *
24072897 GTAGCACGTA-GGGGG-CTCGGG-CTGAT-CCCTGTGTTGCGCATTCTGTCTCTCC-GATCGATT
130 -TAGCACGCAGGGGGGACT-GGGTC-GATCCCCAG-CTTGCGCATTCTGCCTCTCCGGA-CGACT
* * * * * *
24072957 GAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATATGAAGCT-CATTCCATGTCTAAGCC
190 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAAGCC
* * * * * *
24073021 CTAGTCGGACCGAGGGTTGTGGCAGCGGGACCAGCAGCA
254 CCAGCCAGACCGAGGGTTGTGGTAGCAGGACCGGCAGCA
24073060 CGCACAGGGA
Statistics
Matches: 5278, Mismatches: 1284, Indels: 811
0.72 0.17 0.11
Matches are distributed among these distances:
312 2 0.00
314 4 0.00
315 8 0.00
316 17 0.00
317 87 0.02
318 39 0.01
319 1 0.00
320 5 0.00
321 5 0.00
322 4 0.00
323 7 0.00
324 4 0.00
325 5 0.00
326 12 0.00
327 8 0.00
328 3 0.00
329 2 0.00
331 1 0.00
336 2 0.00
338 1 0.00
339 1 0.00
341 1 0.00
342 1 0.00
343 2 0.00
344 52 0.01
348 2 0.00
349 1 0.00
350 1 0.00
352 1 0.00
353 1 0.00
354 2 0.00
355 3 0.00
356 2 0.00
357 36 0.01
358 7 0.00
359 5 0.00
360 8 0.00
361 4 0.00
362 11 0.00
363 20 0.00
364 9 0.00
365 2 0.00
366 25 0.00
367 714 0.14
368 2796 0.53
369 410 0.08
370 17 0.00
371 2 0.00
372 6 0.00
373 13 0.00
374 7 0.00
375 22 0.00
376 34 0.01
377 42 0.01
378 17 0.00
379 11 0.00
380 19 0.00
381 28 0.01
382 5 0.00
383 16 0.00
384 22 0.00
385 423 0.08
386 14 0.00
388 4 0.00
389 3 0.00
391 4 0.00
392 3 0.00
393 1 0.00
394 1 0.00
395 1 0.00
396 1 0.00
403 4 0.00
404 5 0.00
405 5 0.00
406 2 0.00
407 2 0.00
408 1 0.00
409 1 0.00
410 4 0.00
411 5 0.00
412 1 0.00
413 7 0.00
414 5 0.00
416 3 0.00
417 4 0.00
418 4 0.00
419 4 0.00
421 1 0.00
422 3 0.00
425 4 0.00
427 4 0.00
428 2 0.00
429 2 0.00
430 6 0.00
431 5 0.00
432 2 0.00
433 2 0.00
436 3 0.00
437 13 0.00
438 2 0.00
439 2 0.00
440 4 0.00
441 7 0.00
442 24 0.00
443 16 0.00
444 7 0.00
445 8 0.00
446 7 0.00
447 5 0.00
448 8 0.00
449 2 0.00
450 2 0.00
452 6 0.00
453 11 0.00
455 5 0.00
456 8 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (368 bp):
CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGACAGCAGGATCGAT
AGCACGCAGGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGACGACTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCA
GACCGAGGGTTGTGGTAGCAGGACCGGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGGCTGA
TCCCTGGCTTACGCATTATGCCTCTCCGACTGGCCTCTCCGAC
Found at i:24066547 original size:26 final size:26
Alignment explanation
Indices: 24066501--24066553 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24066491 GTTGACTGAG
* *
24066501 GCATACGGAGTTCATCCCCAATTTAA
1 GCATACGGAGTTCATCACCAATCTAA
*
24066527 GCATACGGAGTTCATTACCAATCTAA
1 GCATACGGAGTTCATCACCAATCTAA
24066553 G
1 G
24066554 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAATCTAA
Found at i:24066899 original size:26 final size:26
Alignment explanation
Indices: 24066869--24066918 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
24066859 GTTGACTTAG
24066869 GCATACAGAGTTCATTCCCAGTCTCA
1 GCATACAGAGTTCATTCCCAGTCTCA
* *
24066895 GCATACGGAGTTTATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
24066919 AATATTAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTCA
Done.