Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 241 of 402
Found at i:24067283 original size:26 final size:26
Alignment explanation
Indices: 24067254--24067306 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24067244 GTTGACTTAG
*
24067254 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24067280 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24067306 G
1 G
24067307 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24067651 original size:26 final size:26
Alignment explanation
Indices: 24067622--24067674 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
24067612 GTTGACTTAG
24067622 GCATACGA-AATTCATCCCCAGTCTAA
1 GCATA-GAGAATTCATCCCCAGTCTAA
* * *
24067648 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATAGAGAATTCATCCCCAGTCTAA
24067674 G
1 G
24067675 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATAGAGAATTCATCCCCAGTCTAA
Found at i:24068207 original size:736 final size:733
Alignment explanation
Indices: 24065736--24073052 Score: 4197
Period size: 736 Copynumber: 9.9 Consensus size: 733
24065726 GGCTGAGCGG
* *
24065736 CCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCC-GTCTAAGCATACAGA
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCCAGTCTAAGCATACGGA
* * ** * ** *
24065800 GTTCATTCCCAGTCTAAGAT-TGAACCGGATCGAGGGTTGTGTCAGTAGGATCGGTAGCACATAG
65 GTTCATTCCCAGTCTAAGATCAG-ATCGGATCGAGGGTTACGGCAACAGGATCGGTAGCACACAG
* * * * * * * * * *
24065864 GGGGGATTGAGCCAATCCCTGGCTTGTGCATTCTACCTCTCTGGCCGGTTCAGTGCCCACACGTT
129 GGGGGATCGAGTCGATCCC-AGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGTT
* *
24065929 CGTTTCGTGGGTTAGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGCCGGATCGAGGG
193 CGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGCCGGACCGAGGG
* * * * * * *
24065994 TTGTGGTAGCAAGACTGACAGCGAGATCGACAGCATGCAGAGGGGGATCGAGCTGATTGCT-GGC
258 TTGTGGTAGCAAGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGGGCTGA-TCCTCGGC
* * * * *
24066058 TTGCGCATTATGCCTCTCTGACTGGCCTCTCCGACCGGCTAAGCGCCCGTACGCTCGTTTCGTGG
322 TTACGCATTATGCCTCTCCGACTGGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
*
24066123 GTTGACTTAGGCATACGGAGTTCATGCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
387 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * * *
24066188 C-GAACCGGATCGAAAGTTGC-AGCAGCAGGATCGACAGCACGTAGGGGGGACTGG-GCTAATCC
452 CAG-ACCGGATCGAGGGTTGCGA-CAGCAGGATCGGCAGCACGTAGGGGGGACCGGATC-GATCC
* * * *
24066250 CCGGCTTGCGCATTCTACCTCTCCGGA-TGACTGAGCACCCACATGCTCGTTTCGTGGGTTGGCT
514 CCAGCTTGCGCATTCTACCTCTCC-GACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCT
* * ** * * * *
24066314 TAGGCATACGAAGTACATTCCACATCTAAGCCCTAGTCGGACCGAGGGTTGTGGTAGCAGGACTG
578 TAGGCATAGGGAGTACATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACCG
* * * ** *
24066379 GCAGCAGGATCGGTAGCACGCAGAGAGGGA-CTGGGCTGATCCCTGGCTTGCGCATTATGCCTCT
643 ACAACAGGATCGGTAGCACGCAGAGGGGGATC-GGGCTGATCCC-CACTTACGCATTATGCCTCT
* ** *
24066443 CTGACCGGCCTCTTCGACC-GACTGAGCGC
706 CCGGTCGGCCTCTTCGACCAG-CT-AGTGC
* * * * *
24066472 CCACACGCTCGTTTCATAGGTTGACTGAGGCATACGGAGTTCATCCCCAATTTAAGCATACGGAG
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
* * * * * * * * ** *
24066537 TTCATTACCAATCTAAGATCAGATTGGATTGAAGGTTGCGACAATAGGATCGACAGCACGCAGGG
66 TTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAACAGGATCGGTAGCACACAGGG
* * * * *
24066602 GGGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGTACGTTCG
131 GGGATCGAGTCGATCCCAG-CTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGTTCG
* * * **
24066667 TTTCGTGGGTTGGCTTAGGCATAC-GAAGTACATTCCACATCTAAGCCCCAACCAGACTAAGGGT
195 TTTCGTGGGTTGGCTTAGGCATACAG-AGTACATTCCACGTCTAAGCCCCAGCCGGACCGAGGGT
* * * *
24066731 TATGGTAGCAAGACCGGCAGTGGGATCGACAGTACGTAGAGGGGGACCGGGCTGATCC-CTGGCT
259 TGTGGTAGCAAGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCTC-GGCT
* * * ** * * *
24066795 TATGCATTATGCCTCTCCAACTGGCATCTCTAGCCGGCTGAGTGCCCGCAAGCTCGTTTCATGGG
323 TACGCATTATGCCTCTCCGACTGGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * * * *
24066860 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTCAGCATACGGAGTTTATTCCCAGTCTAATATT
388 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * ** * *
24066925 AGACC-GAACTTAGGGTTGCGACAGTAGGATCAGTAGCACGTAGGGGGGATTGGGTCGATCCTCA
453 AGACCGGATC-GAGGGTTGCGACAGCAGGATCGGCAGCACGTAGGGGGGACCGGATCGATCCCCA
* * ** * * **
24066989 GCTTACGCATTCT-CTCTCTCTGGTC-AGCTGAGCACCCGCACACCCGTTTCGTGCATTGGCTTA
517 GCTTGCGCATTCTAC-CTCTCCGACCGA-CTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTA
* ** * ** * * *
24067052 GGCATAGGGAGCT-CGTTCCATGTCTAAGCAACAGCCAGACCGGCAGCACGCAGAGGAAGACTGG
580 GGCATAGGGAG-TACATTCCATGTCTAAGCCCCAGCCAGACC-G-AG--GGTTGTGGTAG-CAGG
* * * * * * * ** * * *
24067116 GCC-ATAA-A-AATCGCATTGGCATGGCAGAAATATGAAGAT-GTGCTTGA-ACCCACCTAC-CA
639 ACCGACAACAGGATCG--GTAGCA-CGCAG----AGGGGGATCGGGC-TGATCCCCACTTACGCA
*** * * * * * * * * * *
24067175 CCCGTTCGATCCCCGACTTGCGCATCCTGCCACTCTAGTTGGCTGAGC
696 -TTATGC-CTCTCCG-GTCG-GCCT-CTTCGAC-C-AGCTAG-T--GC
* * *
24067223 ACTCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAGCATACGG
1 -C-CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
* * **
24067288 AGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAACAGGATCGGTAGCATGTC-
64 AGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAACAGGATCGGTAGCA-CACA
* * * * ** ** * * * *
24067352 TGGGGGATCGAGCCGATCCCCACCTTGCGCATTCTGCCTCTCCAACCAACTGGGCGCCCGTAGGC
128 GGGGGGATCGAGTCGAT-CCCAGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGT
* *
24067417 TCGTTTCGTGGGTTGGCTTAGGCATA-AGGAGTACATTCCACGTCTAAACCCCAGTCGGACCGAG
192 TCGTTTCGTGGGTTGGCTTAGGCATACA-GAGTACATTCCACGTCTAAGCCCCAGCCGGACCGAG
* * * * * *
24067481 GGTTGTGGTAGTAAGACTGGCAACGGGATCGACAGCATGCAGAGGGTGATCGGGCTGATCCTCGG
256 GGTTGTGGTAGCAAGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCTCGG
* * * * * * * * *
24067546 CGTCCGCATTATGCCTCTCCG-GTCAGCCTTTCCGGCCGACTGAGCACCCGCATGCTCGTTTTGT
321 CTTACGCATTATGCCTCTCCGACT-GGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* * **
24067610 GGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAG
385 GGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
24067675 ATCAGACCGGATCGAGGGTTGTGACAGCAGGATTGGTAGCATGTAGGGGGGACCGGACCGATCCC
450 ATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGTAGGGGGGACCGGATCGATCCC
* * *
24067740 CAGCTTGTGCATTCTACCTCTCCGACCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTA
515 CAGCTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTA
* * *
24067805 GGCATATGGAGTACATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGAC
580 GGCATAGGGAGTACATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACCGAC
* **
24067870 AACGGGATCGGTAGCACGCAGAGGGGGATCGAACTGATCCCCGACTTACGCATTATGCCTCTCCG
645 AACAGGATCGGTAGCACGCAGAGGGGGATCGGGCTGATCCCC-ACTTACGCATTATGCCTCTCCG
* *
24067935 GTTGGCCTCTTCGACCAGTTAAGTGC
709 GTCGGCCTCTTCGACCAGCT-AGTGC
* *
24067961 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAG
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
* *
24068026 TTCATAT-CCAGTCTAAGATCAGATCGGATCGAGGGTTACGGTAACAGGATCGGTAGCACACATG
66 TTCAT-TCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAACAGGATCGGTAGCACACAGG
* * * * * * *
24068090 GGGGACCAAGTCAATCGCCAGCTTGCGCATTCTGTCTCTCCGGCCGACTGAGCGCTCGCACGTTC
130 GGGGATCGAGTCGATC-CCAGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGTTC
* * * *
24068155 ATTTTGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGTCGGACCGAGGGT
194 GTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGCCGGACCGAGGGT
* * * * * ** * * *
24068220 TATGGCAGCAGGACCAGCAGCGGGATTGGTAACACGTAGAGGGGGACCGAGCTGATCC-CTGGCT
259 TGTGGTAGCAAGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCTC-GGCT
* * * * * * * *
24068284 TGCACATTATGCCTCTCCGACTAGCCACTCCAGTCGGTTGAGTGCCCGCACGCTCGTTTCGT-GG
323 TACGCATTATGCCTCTCCGACTGGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
24068348 TTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAATTCATTCCCAGTCTAAGATC
388 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *** *
24068413 GGATCGGATCAAGGGTTGCGGCAGCAGGATCGACAGCACGCCTGGGGGACCAGG-TCGAGCCCC-
453 AGACCGGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGTAGGGGGGACC-GGATCGATCCCCA
* *
24068476 GCCTTGCGCATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
517 G-CTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * **
24068541 GCTTAAGGAGTACATTCCACGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCAGAACCGGTA
581 GCATAGGGAGTACATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACCGACA
** * * * *
24068606 ACAGGATCGACAGCACACAGAGGGTGG-CCGGGCTGATCCTCAGCTTCCGCATTATGCCTCTCCG
646 ACAGGATCGGTAGCACGCAGAGGG-GGATCGGGCTGATCCCCA-CTTACGCATTATGCCTCTCCG
** * ** * **
24068670 GTCAACCTCTCCGGTCGGCTCAGTAT
709 GTCGGCCTCTTCGACCAGCT-AGTGC
* *
24068696 CCTCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAG
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
* * * * * * * * ** *
24068761 TTCATTCCCAGTCTAAGATCGGACCAGATCGAAGGTTACGACAGCAGCATCGATAGCATGCAGAG
66 TTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAACAGGATCGGTAGCACACAGGG
* * * * * * *
24068826 GGGA-CCAGGTCGATCTCCGGCTTGTGCATTCTGCCTGTCTGACCGGCTGAGTGCCCGCACGCTC
131 GGGATCGA-GTCGATC-CCAGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGTTC
* ** * * * *
24068890 GTTTCGTGGGTTGGGTTAGGCATATGGACTACATTCCATGCCTAAGCCCCAGCCAGACCGAGGGT
194 GTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGCCGGACCGAGGGT
* ** * * *
24068955 TGTGGTAGCAGGACCGATAGCAGGATCGACAGCACGCAGAGGGGGACCAGACTGATCCTCGGCTT
259 TGTGGTAGCAAGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCTCGGCTT
* ** * ** * *
24069020 ATGCATTATGCCTCTCCGGTTGGCCTCTTCGATCGGCTGAGCACCCGCATGCTCGTTTCGTGGGT
324 ACGCATTATGCCTCTCCGACTGGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
24069085 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCA
389 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* ** * * * *
24069150 AACCAAATTGAAGGTTGCGACAGCAGGATAGGCAGCACGCAGGGGGGAACCGGATCGATCCCCAG
454 GACCGGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGTAGGGGGG-ACCGGATCGATCCCCAG
* * * * * * * * * *
24069215 CTTGCGCATTCTGCCTCTCCGACCGGCTAAACTCCCGCATGCCCATTTCGTGTGTTGGCTTAAGC
518 CTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
*
24069280 ATAGGGAGCT-CATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAG--TGA--GAC--
583 ATAGGGAG-TACATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACCGACAA
* * * * * * **
24069338 C--GA-C---AGCATGCAGAAGAGGATTGGGCCGATCCCCGGCTTGTGCATTATGCCTCT----T
647 CAGGATCGGTAGCACGCAGAGGGGGATCGGGCTGATCCCC-ACTTACGCATTATGCCTCTCCGGT
* *
24069393 C-G---ATT-G-CC-TC-AGTGC
711 CGGCCTCTTCGACCAGCTAGTGC
* * * **
24069408 CCGCACGCTCGTTTCATGGGTTGATTTATGCATACGGAGTTCATTCCTGGTCTAAG-AT-C---G
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
* ** * ** *
24069468 ---A-----A--CT--G-T---A-C----CGAGGGTTGCGATAGCAGGATCGACAGCACGCAGGG
66 TTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAACAGGATCGGTAGCACACAGGG
* * * * * * * * **
24069512 GGGA-CCAGGTTGATCCCCGACTTGCGCATTCTACCTCTTCGCCCGGCTGAGCGCCTGCAC-ACC
131 GGGATCGA-GTCGATCCCAG-CTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGTTC
* * * *
24069575 TGTTTCGTGGGTTAGCTTAGGCATAC-GAAGTTCATTCCATGTCTAAGCATACGGAGCTCATTCC
194 -GTTTCGTGGGTTGGCTTAGGCATACAG-AGTACATTCCACGTCTAAGC---C----C-CA-GCC
** ** ** * * * *
24069639 CAATCTAAGATTTTGAGCCATGGT-GCACATG-CTGGGC-TCGGGCATGTGCTGGTGCCGCATTT
248 GGA-CCGAG-GGTT--G---TGGTAGCA-A-GAC-CGGCAGCGGG-A--T-C--G-ACAGCA---
** ** * ** * * * * **
24069701 TTTTCGCCCA-GGACACCATCGTCGAAGCATCGTCGAAGCATCATCGGA-GA-GCCTAACCGA-T
293 ----CGCAGAGGGGGA-C--CG-GGCTG-ATCCTCG--GC-TTA-CGCATTATGCCTCTCCGACT
* * * *
24069762 GGCATTGGGGGTTTGATCCTTGACCTGTGCATCCTACCTCTCTAGTCGGCTGAGCGGCCGTATGC
345 GGC------------CT-C-T--CC-G-G------------C----CGGCTGAGCGCCCGCACGC
* *
24069827 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCC-GTCTAAGCATACAGAGTTCATTC
376 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCCAGTCTAAGCATACGGAGTTCATTC
* * * * * * * *
24069891 CCAGTCTAAGAT-TGAACCGAATCGAGGGTTGTGTCAGTAGGATCGGTAGCACATAGGGGGGA-T
440 CCAGTCTAAGATCAG-ACCGGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGTAGGGGGGACC
* * * ** * * * ** * ** * *
24069954 TGAGCCAATCCCTGGCTTGTGCATTCTACCTCTCTGGCCGGTTCAGTGCCCACACGTTCGTTTCG
504 GGA-TCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCG
* ** * * * *
24070019 TGGGTTAGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGT
568 TGGGTTGGCTTAGGCATAGGGAGTACATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGT
* ** ** * * * *** * *
24070084 AGCAAGACCGAC-AGTGAGATCGACAGCATGCAGAGGGGGATCGAGCTGATTGCTGGCTTGCACA
633 AGCAGGACCGACAACAG-GATCGGTAGCACGCAGAGGGGGATCGGGCTGA-TCCCCACTTACGCA
* * * *
24070148 TTATGCCTCTCC-GACTGGCCTCTCCGACCGGCTAAGCGC
696 TTATGCCTCTCCGGTC-GGCCTCTTCGACCAGCT-AGTGC
* * * *
24070187 CCGTACGCTCGTTTCGTGGGTTGATTTAGGCATACGGAGTTCATGCCCAGTCTAAGCATACGGAG
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
* ** * ** * * ** *
24070252 TTCATTCCCAGTCTAAGATC-GAACCGGATCGAAAGTTGCAACAGCAGGATTGACAGCACGCAGG
66 TTCATTCCCAGTCTAAGATCAG-ATCGGATCGAGGGTTACGGCAACAGGATCGGTAGCACACAGG
* * * * * ** * * * * *
24070316 GGGGA-CTG-GGCTAATCCCCGGCTTGGGCATTCTACCTCTCCGGATGACTGAGCACCCACATGC
130 GGGGATC-GAGTC-GAT-CCCAGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGT
* * *
24070379 TCGTTTCGTGGGTTGGCTTAGGCATAC-GAAGTACATTCCACATCTAAGCCCTAGTCGGACCGAG
192 TCGTTTCGTGGGTTGGCTTAGGCATACAG-AGTACATTCCACGTCTAAGCCCCAGCCGGACCGAG
* * * ** * *
24070443 GGTTGTGGTAGCAGGACTGGCAGCAGGATCGGTAGCACGCAGAGAGGGACTGGGCTGATCC-CTG
256 GGTTGTGGTAGCAAGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCTC-G
* * * * * * * *
24070507 GCTTGCGCATTATGCCTCTCTGACCGGCCTCTTCGACACGACTGAGCGCCCACACGCTCGTTTCA
320 GCTTACGCATTATGCCTCTCCGACTGGCCTCTCCGGC-CGGCTGAGCGCCCGCACGCTCGTTTCG
* * * * * * *
24070572 TAGGTTGACTGAGGCATACGGAGTTCATCACCAATTTAAGCATACGGAGTTCATTACCAATCTAA
384 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* ** * * ** * * ** *
24070637 GATCATATTGGATTGAAGGTTGCGACAATAGGATCGACAGCACGCAGGGGGGATTGGGTCGATCC
449 GATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGTAGGGGGGACCGGATCGATCC
* * * * ** * * *
24070702 CC-GACTTGTGCATTTTGCCTCTTCGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCT
514 CCAG-CTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCT
* * ** * ** * *
24070766 TAGGCATACGAAGTACATTCCACATCTAAGCCCCAACCAGACTAAGGGTTATGGTAGCAAGACC-
578 TAGGCATAGGGAGTACATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACCG
*** ** * * * ** *
24070830 AGCAGTGGGATCGACAGTACGTAGAGGGGGACCGGGCTGATCCCTGGCTTATGCATTATGCCTCT
643 A-CAACAGGATCGGTAGCACGCAGAGGGGGATCGGGCTGATCCC-CACTTACGCATTATGCCTCT
** * ** *
24070895 CC-AACTGGCATC-TCTGGTCGGCTGAGTGC
706 CCGGTC-GGCCTCTTC-GACCAGCT-AGTGC
* * * * *
24070924 CCGCAAGCTCTTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTCAGCATACGGAG
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
* * * * * * * * ** * * *
24070989 TTTATTCCCAGTCTAATATTAGA-CCGAACTTAGGGTTGCGACAGTAGGATCAGTAGCACGCAGA
66 TTCATTCCCAGTCTAAGATCAGATCGGATC-GAGGGTTACGGCAACAGGATCGGTAGCACACAGG
* * * ** * * * ***
24071053 GGGGATTGGGCCGATCCCCAGCTTACGCATTCT-CTCTCTCCGGTCAGCTGAGCACCCGCACACC
130 GGGGATCGAGTCGAT-CCCAGCTTGTGCATTCTGC-CTCTCCGGCCGGCTGAGCGCCCGCACGTT
* ** * *
24071117 CGTTTCGTGCGTTGGCTTAGGCATAGGGAGCT-CGTTCCATGTCTAAGCAACAGCCAGACCGGCA
193 CGTTTCGTGGGTTGGCTTAGGCATACAGAG-TACATTCCACGTCTAAGC--C--CCAG-CCGG--
** * ** * * ** * * * * * ** *
24071181 ACACGCAGAGGAAGACTGGGCCATAAAAATC-GCATTGGCAT-GGCAG-A--AATATGAAGA-TG
250 AC-CG-AG-GGTTG--T-GG-TAGCAAGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACCG
* * ** * * * * * * * ** **
24071240 TGCTTGAACC-CACCTACCACCCGTTCGATCCCCGACTTGCGCATCCT-GCCACTCTAGTTGGCT
308 GGC-TGATCCTCGGCT--TACGCATT--AT-GCC-TC-TCCG-A--CTGGCCTCTCCGGCCGGCT
* * * *
24071303 GAGCACTCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAGCAT
362 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
* * *
24071368 ACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGTAGCAC
427 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGGCAGCAC
* ** * * * * ** *
24071433 GTCA-GGGGGATCGGGCCGATCCCCACCTTGCGCATTTTGCCGCTCTAACC-AGCTGAGCGCCCG
492 GT-AGGGGGGACCGGATCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGA-CTGAGCACCCG
* * ** * * *
24071496 TAGGCTCGTTTCGTGGGTTGGCTTAGGCATAAAGAGTACATTCCACGTCTAAACCCCAGTCAGAC
555 CACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTACATTCCATGTCTAAGCCCCAGCCAGAC
* * * * * ** * *
24071561 CGAGGGTTGTGGTAGTAAGACTGGCAACGGGATCGACAGCATGCAGAGGGTGATCGGGCTGATCC
620 CGAGGGTTGTGGTAGCAGGACCGACAACAGGATCGGTAGCACGCAGAGGGGGATCGGGCTGATCC
** * * * * **
24071626 TCGGCGT-CTGCATTATGCCTCTCCGGTCAGCCT-TACCGGCC-GACTGAGCAC
685 -CCACTTAC-GCATTATGCCTCTCCGGTCGGCCTCT-TCGACCAG-CT-AGTGC
* ** * * **
24071677 CCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTAAGCATATAGAG
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
* * ** * * * **
24071742 TTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGTGACAGCAGGATTGGTAGCATGCAGGG
66 TTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAACAGGATCGGTAGCACACAGGG
* * * * * * * *
24071807 GGGACCG-GACCGATCCCCAGCTTGTGCATTCTACCTCTCCGACCGACTGAGTGCCTGCACGCTC
131 GGGATCGAG-TCGAT-CCCAGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGTTC
** * * *
24071871 GTTTCGTGGGTTGGCTTAGGCATATGGAGTACATTCCATGTCTAAGCCCCAGTCGGATCGAGGGT
194 GTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGCCGGACCGAGGGT
* * * ** ** * *
24071936 TGTGGTAGCAGGACCGACAACGGGATCGGTAGCACGCAGAGGGGGACCGAACTGATCCCCGACTT
259 TGTGGTAGCAAGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCTCGGCTT
** * * * * *
24072001 ACGCATTATGCCTCTCCGGTTGGCCTCTTCGACCAGTTAAGCGCCCGCACGCTCGTTTCGTGGGT
324 ACGCATTATGCCTCTCCGACTGGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * *
24072066 TGAGTTAGGCATACGGAATTCATCCCTAGTCTAAGCATACGGAGTTCATAT-CCAGTCTAAGATC
389 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCAT-TCCCAGTCTAAGATC
* * * * ** ** * * ** * * * **
24072130 GGATCGGATCGAGAGTTACGGTAATAGGGTCGGTAGCACACATGGGGGACC-AAGTCAATTGCCA
453 AGACCGGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGTAGGGGGGACCGGA-TCGATCCCCA
** * * * * * * *
24072194 GCTTGCGCATTCTGTCTCTCCGGCCGACTGAGCGCTCGTACGTTCATTTTGTGGGTTGGCTTAGG
517 GCTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
** ** * * * * *
24072259 CATACAGAGTACATTCCACATCTAAGCCCCAGTCGGACCGAGGGTTATGGCAGCAGGACC-AGTA
582 CATAGGGAGTACATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACCGA-CA
* * * * * * * ** * *
24072323 GCGGGATTGGTAACACGTAGAGGGGGACCGAGCTGATCCCTGGCTTGCACATTATGCCTCTCC-G
646 ACAGGATCGGTAGCACGCAGAGGGGGATCGGGCTGATCCC-CACTTACGCATTATGCCTCTCCGG
* * * * * * *
24072387 ACTAGCCAC-TCCAGTCGGTTGAGTGC
710 TC-GGCCTCTTCGA-CCAGCT-AGTGC
* * * * *
24072413 CCGCACGCTCGTTTCGT-GGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGAAA
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
* * * * * * * ** *
24072477 TTCATTCCCAGTCTAAGATCGGATCGGGTCAAGGGATGCGGCAGCAGGATCAGTAGCACGTAGAG
66 TTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAACAGGATCGGTAGCACACAGGG
* * ** * * * * * *
24072542 GGGACCGAGCCGATCCTCAGCTTACGCATTCTGCCTCTTCGGTCGGCTGGGCGCCTGCATGCTCG
131 GGGATCGAGTCGATCC-CAGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGTTCG
* * * * * * *
24072607 TTTCGTGGGTTGGCTTAGGCATACGGAGTATATTCCACATCTAAACCCCAGTCAGACTGAGGGTT
195 TTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGCCGGACCGAGGGTT
* ** * * * * * ** * *
24072672 GCGACAGTACGACCAGCTGCGGGATCGACAGCATGCAGAGGGGGATTGAGCTGATCCTCGGCTTG
260 GTGGTAGCAAGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCTCGGCTTA
* * * * * * * *
24072737 TGCATTATGCCTCACCGGCCGGCCTCTCCGGTCGGCTAAGTGCCCGCACGATCGTTTCGTGGGTT
325 CGCATTATGCCTCTCCGACTGGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * * *
24072802 GGCTTAGGCATACGGAGTTCATCCCCTGTCTAAGCATATGGAGTTCATTCCAAGTCTAAGATAAG
390 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * ** * ** * * * *
24072867 ACTGGATCAAGGGTTGCGGCAGCAGGATTAGTAGCACGTAGGGGGCTCGGGCT-GAT-CCCTGTG
455 ACCGGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGTAGGGGGGACCGGATCGATCCCCAG-C
** * * ** * *
24072930 TTGCGCATTCTGTCTCTCCGATCGATTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCA
519 TTGCGCATTCTACCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
* * * * * * *
24072995 TATGAAGCT-CATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGCAGCGGGACC
584 TAGGGAG-TACATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACC
24073053 AGCAGCACGC
Statistics
Matches: 5060, Mismatches: 1216, Indels: 612
0.73 0.18 0.09
Matches are distributed among these distances:
685 5 0.00
686 114 0.02
689 1 0.00
690 1 0.00
691 1 0.00
693 1 0.00
694 3 0.00
695 4 0.00
696 3 0.00
697 4 0.00
699 2 0.00
701 3 0.00
702 8 0.00
703 3 0.00
704 1 0.00
705 1 0.00
706 1 0.00
707 1 0.00
708 1 0.00
709 4 0.00
710 1 0.00
711 2 0.00
712 52 0.01
714 1 0.00
715 4 0.00
716 6 0.00
717 1 0.00
718 1 0.00
719 1 0.00
720 6 0.00
721 6 0.00
722 9 0.00
723 3 0.00
724 4 0.00
725 35 0.01
728 1 0.00
729 2 0.00
731 1 0.00
733 5 0.00
734 115 0.02
735 1010 0.20
736 1224 0.24
737 592 0.12
738 22 0.00
739 7 0.00
740 27 0.01
741 20 0.00
742 11 0.00
743 16 0.00
744 34 0.01
745 32 0.01
746 23 0.00
747 14 0.00
748 15 0.00
749 25 0.00
750 11 0.00
751 13 0.00
752 9 0.00
753 980 0.19
754 126 0.02
755 120 0.02
756 8 0.00
757 1 0.00
758 4 0.00
762 2 0.00
763 1 0.00
766 37 0.01
767 5 0.00
768 2 0.00
769 10 0.00
770 4 0.00
771 5 0.00
772 2 0.00
773 1 0.00
774 1 0.00
775 6 0.00
776 4 0.00
777 1 0.00
779 54 0.01
780 2 0.00
781 1 0.00
782 4 0.00
783 1 0.00
784 1 0.00
785 1 0.00
786 1 0.00
787 1 0.00
788 5 0.00
789 8 0.00
790 3 0.00
792 2 0.00
794 4 0.00
795 3 0.00
796 3 0.00
797 2 0.00
798 1 0.00
800 1 0.00
801 1 0.00
802 1 0.00
804 1 0.00
805 111 0.02
806 5 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (733 bp):
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAACAGGATCGGTAGCACACAGGG
GGGATCGAGTCGATCCCAGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGTTCGT
TTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGCCGGACCGAGGGTTG
TGGTAGCAAGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCTCGGCTTAC
GCATTATGCCTCTCCGACTGGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCGGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGTAGGGGGGACCGGATCGATCCCCAGCTT
GCGCATTCTACCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
GGGAGTACATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACCGACAACAGG
ATCGGTAGCACGCAGAGGGGGATCGGGCTGATCCCCACTTACGCATTATGCCTCTCCGGTCGGCC
TCTTCGACCAGCTAGTGC
Found at i:24068396 original size:26 final size:26
Alignment explanation
Indices: 24068357--24068409 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24068347 GTTGGCTTAG
* *
24068357 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
*
24068383 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
24068409 G
1 G
24068410 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAGTCTAA
Found at i:24068755 original size:26 final size:26
Alignment explanation
Indices: 24068725--24068777 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24068715 GTTGACTTAG
24068725 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
24068751 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24068777 G
1 G
24068778 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24069122 original size:26 final size:26
Alignment explanation
Indices: 24069093--24069145 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24069083 GTTGACTTAG
24069093 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24069119 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24069145 G
1 G
24069146 ATCAAACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24069733 original size:11 final size:11
Alignment explanation
Indices: 24069717--24069742 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
24069707 CCCAGGACAC
24069717 CATCGTCGAAG
1 CATCGTCGAAG
24069728 CATCGTCGAAG
1 CATCGTCGAAG
24069739 CATC
1 CATC
24069743 ATCGGAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (11 bp):
CATCGTCGAAG
Found at i:24069878 original size:26 final size:26
Alignment explanation
Indices: 24069848--24069900 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24069838 GTTGACTTAG
* *
24069848 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
24069874 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
24069900 G
1 G
24069901 ATTGAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:24070245 original size:26 final size:26
Alignment explanation
Indices: 24070216--24070268 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24070206 GTTGATTTAG
24070216 GCATACGGAGTTCATGCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
*
24070242 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
24070268 G
1 G
24070269 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATGCCCAGTCTAA
Found at i:24070615 original size:26 final size:26
Alignment explanation
Indices: 24070585--24070637 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24070575 GTTGACTGAG
*
24070585 GCATACGGAGTTCATCACCAATTTAA
1 GCATACGGAGTTCATCACCAATCTAA
*
24070611 GCATACGGAGTTCATTACCAATCTAA
1 GCATACGGAGTTCATCACCAATCTAA
24070637 G
1 G
24070638 ATCATATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAATCTAA
Found at i:24070983 original size:26 final size:26
Alignment explanation
Indices: 24070953--24071002 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
24070943 GTTGACTTAG
24070953 GCATACAGAGTTCATTCCCAGTCTCA
1 GCATACAGAGTTCATTCCCAGTCTCA
* *
24070979 GCATACGGAGTTTATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
24071003 AATATTAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTCA
Found at i:24071367 original size:26 final size:26
Alignment explanation
Indices: 24071338--24071390 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24071328 GTTGACTTAG
*
24071338 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24071364 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24071390 G
1 G
24071391 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24071597 original size:753 final size:753
Alignment explanation
Indices: 24070559--24071917 Score: 1675
Period size: 753 Copynumber: 1.8 Consensus size: 753
24070549 TGAGCGCCCA
*
24070559 CACGCTCGTTTCATAGGTTGACTGAGGCATACGGAGTTCATCACCAATTTAAGCATACGGAGTTC
1 CACGCTCGTTTCATAGGTTGACTGAGGCATACGGAGTTCATCACCAATCTAAGCATACGGAGTTC
* ** * *
24070624 ATTACCAATCTAAGATCATATTGGATTGAAGGTTGCGACAATAGGATCGACAGCACGCAGGGGGG
66 ATTACCAATCTAAGATCAGACCGGATCGAAGGTTGCGACAACAGGATCGACAGCACGCAGGGGGG
* * * * *** *
24070689 ATTGGGTCGATCCCCGACTTGTGCATTTTGCCTCTTCGGTCGGCTGAGCGCCCGTACGCTCGTTT
131 ATCGGGCCGATCCCCGACTTGCGCATTTTGCCGCTTCAACCAGCTGAGCGCCCGTACGCTCGTTT
* * *
24070754 CGTGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCCAACCAGACTAAGGGTTATG
196 CGTGGGTTGGCTTAGGCATAAGAAGTACATTCCACATCTAAACCCCAACCAGACCAAGGGTTATG
** * * *
24070819 GTAGCAAGACCAGCAGTGGGATCGACAGTACGTAGAGGGGGACCGGGCTGATCC-CTGGCTTATG
261 GTAGCAAGACCAGCAACGGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCTC-GGCGTATG
* * * * **
24070883 CATTATGCCTCTCCAACT-GGCATCT-CTGGTCGGCTGAGTGCCCGCAAGCTC-TTTTCATGGGT
325 CATTATGCCTCTCC-ACTCAGCAT-TACCGGCCGACTGAGCACCCGCAAGCTCGTTTT-ATGGGT
* * * * * * *
24070945 TGACTTAGGCATAC-AGAGTTCATTCCCAGTCTCAGCATACGGAGTTTATTCCCAGTCTAATATT
387 TGACTTAGGCATACGA-AATTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
* * ** *
24071009 AGACCGAA-CTTAGGGTTGCGACAGTAGGATCAGTAGCACGCAGAGGGGATTGGGCCGATCCCCA
451 AGACCGAATC-GAGGGTTGCGACAGCAGGATCAGTAGCACGCAGAGGGGACCGGACCGATCCCCA
*
24071073 GCTTACGCATTCT-CTCTCTCCGGTCAG-CTGAGCACCCGCACACCCGTTTCGTGCGTTGGCTTA
515 GCTTACGCATTCTAC-CTCTCC-GACAGACTGAGCACCCGCACACCCGTTTCGTGCGTTGGCTTA
*
24071136 GGCATAGGGAGCT-CGTTCCATGTCTAAGCAACAGCCAGACCGGCAACACGCAGAGGAAGACTGG
578 GGCATAGGGAG-TACATTCCATGTCTAAGCAACAGCCAGACCGGCAACACGCAGAGGAAGACTGG
24071200 GCCATAAAAATCGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTT
642 GCCATAAAAATCGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTT
24071265 CGATCCCCGACTTGCGCATCCTGCCACTCTAGTTGGCTGAGCACTCG
707 CGATCCCCGACTTGCGCATCCTGCCACTCTAGTTGGCTGAGCACTCG
* * * * * * *
24071312 CACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAGCATACGGAGTTC
1 CACGCTCGTTTCATAGGTTGACTGAGGCATACGGAGTTCATCACCAATCTAAGCATACGGAGTTC
* * * * **
24071377 ATT-CCTAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGTAGCACGTCA-GGG
66 ATTACC-AATCTAAGATCAGACCGGATCGAAGGTTGCGACAACAGGATCGACAGCACG-CAGGGG
*
24071440 GGATCGGGCCGATCCCC-ACCTTGCGCATTTTGCCGC-TCTAACCAGCTGAGCGCCCGTAGGCTC
129 GGATCGGGCCGATCCCCGA-CTTGCGCATTTTGCCGCTTC-AACCAGCTGAGCGCCCGTACGCTC
* ** *
24071503 GTTTCGTGGGTTGGCTTAGGCATAA-AGAGTACATTCCACGTCTAAACCCCAGTCAGACCGAGGG
192 GTTTCGTGGGTTGGCTTAGGCATAAGA-AGTACATTCCACATCTAAACCCCAACCAGACCAAGGG
* * ** * * *
24071567 TTGTGGTAGTAAGACTGGCAACGGGATCGACAGCATGCAGAGGGTGATCGGGCTGATCCTCGGCG
256 TTATGGTAGCAAGACCAGCAACGGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCTCGGCG
* ** * * *
24071632 TCTGCATTATGCCTCTCCGGTCAGCCTTACCGGCCGACTGAGCACCCGCATGCTCGTTTTGTGGG
321 TATGCATTATGCCTCTCCACTCAGCATTACCGGCCGACTGAGCACCCGCAAGCTCGTTTTATGGG
* *
24071697 TTGACTTAGGCATACGAAATTCATCCCCAGTCTAAGCATATAGAGTTCATTCCTAGTCTAAGATC
386 TTGACTTAGGCATACGAAATTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
* * ** * *
24071762 AGACCGGATCGAGGGTTGTGACAGCAGGATTGGTAGCATGCAGGGGGGACCGGACCGATCCCCAG
451 AGACCGAATCGAGGGTTGCGACAGCAGGATCAGTAGCACGCAGAGGGGACCGGACCGATCCCCAG
** * ** * * * *
24071827 CTTGTGCATTCTACCTCTCCGACCGACTGAGTGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGC
516 CTTACGCATTCTACCTCTCCGACAGACTGAGCACCCGCACACCCGTTTCGTGCGTTGGCTTAGGC
*
24071892 ATATGGAGTACATTCCATGTCTAAGC
581 ATAGGGAGTACATTCCATGTCTAAGC
24071918 CCCAGTCGGA
Statistics
Matches: 501, Mismatches: 91, Indels: 28
0.81 0.15 0.05
Matches are distributed among these distances:
752 12 0.02
753 479 0.96
754 10 0.02
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.24
Consensus pattern (753 bp):
CACGCTCGTTTCATAGGTTGACTGAGGCATACGGAGTTCATCACCAATCTAAGCATACGGAGTTC
ATTACCAATCTAAGATCAGACCGGATCGAAGGTTGCGACAACAGGATCGACAGCACGCAGGGGGG
ATCGGGCCGATCCCCGACTTGCGCATTTTGCCGCTTCAACCAGCTGAGCGCCCGTACGCTCGTTT
CGTGGGTTGGCTTAGGCATAAGAAGTACATTCCACATCTAAACCCCAACCAGACCAAGGGTTATG
GTAGCAAGACCAGCAACGGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCTCGGCGTATGC
ATTATGCCTCTCCACTCAGCATTACCGGCCGACTGAGCACCCGCAAGCTCGTTTTATGGGTTGAC
TTAGGCATACGAAATTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC
GAATCGAGGGTTGCGACAGCAGGATCAGTAGCACGCAGAGGGGACCGGACCGATCCCCAGCTTAC
GCATTCTACCTCTCCGACAGACTGAGCACCCGCACACCCGTTTCGTGCGTTGGCTTAGGCATAGG
GAGTACATTCCATGTCTAAGCAACAGCCAGACCGGCAACACGCAGAGGAAGACTGGGCCATAAAA
ATCGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCG
ACTTGCGCATCCTGCCACTCTAGTTGGCTGAGCACTCG
Found at i:24072858 original size:26 final size:26
Alignment explanation
Indices: 24072809--24072861 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24072799 GTTGGCTTAG
**
24072809 GCATACGGAGTTCATCCCCTGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
* *
24072835 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
24072861 G
1 G
24072862 ATAAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:24074076 original size:26 final size:26
Alignment explanation
Indices: 24074040--24074092 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24074030 GTTGGCTTAG
*
24074040 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
24074066 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
24074092 G
1 G
24074093 ATTGGACCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:24074446 original size:26 final size:26
Alignment explanation
Indices: 24074410--24074460 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
24074400 TGACTTAGGC
24074410 ATACGAAGTTCATCCCCAGTCTAAGT
1 ATACGAAGTTCATCCCCAGTCTAAGT
* *
24074436 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
24074461 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGT
Found at i:24075375 original size:26 final size:26
Alignment explanation
Indices: 24075345--24075397 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24075335 GTTGACTTAG
*
24075345 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
24075371 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
24075397 G
1 G
24075398 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:24075663 original size:158 final size:158
Alignment explanation
Indices: 24075371--24075712 Score: 361
Period size: 158 Copynumber: 2.2 Consensus size: 158
24075361 CCCAGTCTAA
* * * * ** *
24075371 GCATACGGAGTTCATTCCCAATCTAAGATCGAATCAGACCGAGGGTTACGGTAGTAGGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGAACGAGGGTTACGGTACCAGGATCGACA
* * * * * *
24075436 GCACACAGGAGGGACCAAGTCGATCCCCGATTTGCGCATTATGTCTCTTCAGCCGGCTCAACGCC
66 GCACACAGGAGGGACCAAGTCCATCCCCGACTTGCGCATTATGCCTCTCCAGCCGACTCAACGCA
* *
24075501 CGCACACTCATTTTGTGGGTTGACTTAT
131 CGCACACTCATTTCGTGGGTTGACTTAG
* *
24075529 GCATATGAAGTTCATTCCCAGTCTAAGATC-AGACCAGAATGAGGGTTGA-GGTACCAGGATCGA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGA-ACCAGAACGAGGGTT-ACGGTACCAGGATCGA
** * * * * *
24075592 CAGCACGTAGGGGGGATCGAGTCCATCCCCGACTTGCGCATTCTGCCTCTCC-GACCGACTGAAC
64 CAGCACACAGGAGGGACCAAGTCCATCCCCGACTTGCGCATTATGCCTCTCCAG-CCGACTCAAC
* * *
24075656 GCACGCACGCTCGTTTCGTGGGTTGGCTTAG
128 GCACGCACACTCATTTCGTGGGTTGACTTAG
*
24075687 GCATACGGAG-TCATT-CCATGTCTAAG
1 GCATACGAAGTTCATTCCCA-GTCTAAG
24075713 CATACAAAGC
Statistics
Matches: 151, Mismatches: 29, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
156 3 0.02
157 14 0.09
158 133 0.88
159 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGAACGAGGGTTACGGTACCAGGATCGACA
GCACACAGGAGGGACCAAGTCCATCCCCGACTTGCGCATTATGCCTCTCCAGCCGACTCAACGCA
CGCACACTCATTTCGTGGGTTGACTTAG
Found at i:24077104 original size:159 final size:159
Alignment explanation
Indices: 24076865--24077316 Score: 540
Period size: 159 Copynumber: 2.9 Consensus size: 159
24076855 AGGGTTACGA
** *
24076865 CAGCAGGATCGGTAGCACGCA-AGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCC
1 CAGCAGGATCGACAGCACGCAGAGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCC
* * *
24076929 GACCGGCTGAGCGCCCGCACGACCGTTTCATGGGTTAGCTTAGGCATAGGGAGCTCATTCCATGT
66 GACCGGCTGAGCGCCCGCACGACCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGT
*
24076994 CTAAGCCCTAG-TCAGACCGAGGGTTGTGG
131 CTAAGCCC-AGACCAGACCGAGGGTTGTGG
* * * * *
24077023 CAGC-GGGTCTGACAGCACGCAGAGGGGGACCGGGTCGATCCCTGGCTTGAGCATTATGCCTCTT
1 CAGCAGGATC-GACAGCACGCAGAGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTC
* * * * * * * ** *
24077087 CGATCGGTTCAGTGCCCGCGCGATCGTTTCGTGGGTTAACTTATACATATGGAGTTCATTCCCA-
65 CGACCGGCTGAGCGCCCGCACGACCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATT-CCAT
** *
24077151 GTCTAAGATCAGACCGGACCGAGGGTTGTGG
129 GTCTAAGCCCAGACCAGACCGAGGGTTGTGG
* * *
24077182 CAGCAGGATCGACAACACGTAG-GGGGGATCGAGTCGAT-CCTCGGCTTGCGCATTCTGCCTCTC
1 CAGCAGGATCGACAGCACGCAGAGGGGGATCGGGTCGATCCCT-GGCTTGCGCATTCTGCCTCTC
* *
24077245 CGACCGGCTGAGCGCTCGCAC-ACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
65 CGACCGGCTGAGCGCCCGCACGAC-CGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCAT
24077309 GTCTAAGC
129 GTCTAAGC
24077317 ATACGGAGCT
Statistics
Matches: 241, Mismatches: 45, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
157 11 0.05
158 100 0.41
159 123 0.51
160 7 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
CAGCAGGATCGACAGCACGCAGAGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCC
GACCGGCTGAGCGCCCGCACGACCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCCCAGACCAGACCGAGGGTTGTGG
Found at i:24077275 original size:158 final size:159
Alignment explanation
Indices: 24076814--24077315 Score: 543
Period size: 158 Copynumber: 3.2 Consensus size: 159
24076804 CCCAGTCTAA
* * * * * * ** * **
24076814 GCATACGAATTTCATTCCCA-GTCTAAGATCAAATTGGGCTGAGGGTTACGACAGCAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* *
24076878 AGCACGCAAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
65 AGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
*
24076943 CCGCACGAC-CGTTTCATGGGTTAGCTTAG
130 CCGCACGACTCGTTTCGTGGGTTAGCTTAG
* * ** * *
24076972 GCATAGGGAGCTCATTCCATGTCTAAGCCCTAG-TCAGACCGAGGGTTGTGGCAGC-GGGTCTGA
1 GCATACGGAGTTCATTCCATGTCTAAGATC-AGATCGGACCGAGGGTTGTGGCAGCAGGATC-GA
* * * * * * * *
24077035 CAGCACGCAGAGGGGGACCGGGTCGATCCCTGGCTTGAGCATTATGCCTCTTCGATCGGTTCAGT
64 CAGCACGCAG-GGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* * *
24077100 GCCCGCGCGA-TCGTTTCGTGGGTTAACTTAT
128 GCCCGCACGACTCGTTTCGTGGGTTAGCTTAG
* * *
24077131 ACATATGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * *
24077195 AACACGTAGGGGGGATCGAGTCGAT-CCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
65 AGCACGCAGGGGGGATCGGGTCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* *
24077259 CTCGCAC-ACTCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGACTCGTTTCGTGGGTTAGCTTAG
24077289 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
24077316 CATACGGAGC
Statistics
Matches: 276, Mismatches: 57, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
157 14 0.05
158 132 0.48
159 123 0.45
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGACTCGTTTCGTGGGTTAGCTTAG
Found at i:24077339 original size:26 final size:26
Alignment explanation
Indices: 24077289--24077341 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24077279 GTTGGCTTAG
* *
24077289 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24077315 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24077341 G
1 G
24077342 ATTTTGAGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24078024 original size:26 final size:26
Alignment explanation
Indices: 24077988--24078040 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24077978 GTTGACTTAG
24077988 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24078014 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24078040 G
1 G
24078041 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24078340 original size:26 final size:26
Alignment explanation
Indices: 24078310--24078360 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
24078300 GTTGACTTAG
*
24078310 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
* *
24078336 GCATACGGACTTTATTCCCAGTCTA
1 GCATACGGACTTCATCCCCAGTCTA
24078361 TGATCAGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAGTCTAA
Found at i:24078818 original size:26 final size:26
Alignment explanation
Indices: 24078768--24078820 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24078758 GTTGGCTTAG
* *
24078768 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24078794 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24078820 G
1 G
24078821 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24079892 original size:25 final size:26
Alignment explanation
Indices: 24079858--24079909 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
24079848 GTTCACTTAG
24079858 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24079883 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24079909 G
1 G
24079910 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24080134 original size:367 final size:366
Alignment explanation
Indices: 24079454--24080461 Score: 1201
Period size: 367 Copynumber: 2.7 Consensus size: 366
24079444 CTCTGGTCGA
* * * *
24079454 CTGAACGCCCGCACGCTCGTTTCATGGATTGACTTAGGCATACGGAGCTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
** * * *
24079519 ATACAAAGTTCATT-CTAGTCTAATATCGAACTGGATCGA-GGTT-TGCGACAGTAGGATCGACA
66 ATACGGAGTTCATTCCCAGTCTAAGATCG-ACTGGATCGAGGGTTATG-G-CAGCAGGATCGACA
* * * *
24079581 GCACGCAGGAAGGACCGGGCTGATCCCCGGCTTGTGCATTCTGCCTC-TCTGGCTGACTGAGCGT
128 GCACGCAGGAGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTC-GGCTGGCTGAGCGC
*
24079645 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTACATTCCACGTCTAAGCCCCAGTCG
192 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAG-CCCAGTCG
* * * * * * *
24079710 GATCGAGGGTTGTGGCAGCAGGATCGACAGCAGGATCAGCAGCACGTAAAGGGGGATCAAGCTGA
256 GACCAAGGGTTGTGGCAGCAGGACCGACAGCAGGATCAGCACCACGCAAAAGGGGATCAAGCTAA
* * ** *
24079775 TCCCCGACTTGCGCATTATGCCTCTCTGGTCGACCTC-TCTGGTAAG
321 TCCCCGACTTGCACATTATGCCTCTCCGACCGACCTCTTC-GATAAG
* * *
24079821 TTGAGCGCCCGCACGCTCATTTCGTGGGTTCACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
**
24079885 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTATGGCAGCAGGATCGGTAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATC-GACTGGATCGAGGGTTATGGCAGCAGGATCGACAGC
* * * *
24079950 AAGCAGGAGGGACCGGGCCGATCCCCGACTTGTCCATTCTGCTTCTTCGGCTGGCTGAGCGCCCG
130 ACGCAGGAGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCTGGCTGAGCGCCCG
* * * * * *
24080015 CACGCTCATTTCGTGGGTTGGCTTCGGCATACGGAGTACATTCCACATCTAAGCCTCAGCCAGAC
195 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCC-CAGTCGGAC
* **
24080080 CAAGGGTTGTGGCAGCAGGACCGACAGCGGGATC-GACACCACGCAAAAGGGGATCGGGCTAATC
259 CAAGGGTTGTGGCAGCAGGACCGACAGCAGGATCAG-CACCACGCAAAAGGGGATCAAGCTAATC
* * *
24080144 CCTGGCTTGCACATTATGCCTCTCCGACCGACCTCTTCGATCAG
323 CCCGACTTGCACATTATGCCTCTCCGACCGACCTCTTCGATAAG
* *
24080188 CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * * * *
24080253 ATACGGAGTTCATTCCCTGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCAAGATCGACAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATC-GACTGGATCGAGGGTTATGGCAGCAGGATCGACAGC
* * * **** * * *
24080318 ACGCAGGGGGGATC-GGTCGATGTTTGGCTTGTGCATTCTGCCTCTCCGG-TCGGTTGAGCTCCC
130 ACGCAGGAGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCT-GGCTGAGCGCCC
* * *
24080381 GCACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGCT-CATTGCATGTCTAAGCCCTAGTCG
194 GCACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCC-AGTCG
24080444 GACCAAGGGTTGTGGCAG
256 GACCAAGGGTTGTGGCAG
24080462 TGGGACCGGT
Statistics
Matches: 544, Mismatches: 84, Indels: 26
0.83 0.13 0.04
Matches are distributed among these distances:
366 30 0.06
367 423 0.78
368 89 0.16
369 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (366 bp):
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCGACTGGATCGAGGGTTATGGCAGCAGGATCGACAGCA
CGCAGGAGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCTGGCTGAGCGCCCGC
ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCAGTCGGACCA
AGGGTTGTGGCAGCAGGACCGACAGCAGGATCAGCACCACGCAAAAGGGGATCAAGCTAATCCCC
GACTTGCACATTATGCCTCTCCGACCGACCTCTTCGATAAG
Found at i:24081834 original size:25 final size:26
Alignment explanation
Indices: 24081799--24081850 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
24081789 GTTGACTTAG
24081799 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
24081825 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24081850 G
1 G
24081851 ATCGTACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24082097 original size:364 final size:366
Alignment explanation
Indices: 24081418--24082113 Score: 938
Period size: 364 Copynumber: 1.9 Consensus size: 366
24081408 ACTCGTTTCG
24081418 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATGCAGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATG-AGAGTTCATTCCCAGTCTAA
* * * * *
24081483 GATCGGATAGGATCGAGGGTTGCGATAGCAGGATCGATAGCACGCAGGAGGGATCGGACGGATCC
65 GATCGGACAGGATCGAGGGTTACGATAGCAAGATCGATAGCAAGCAGGAGGGATCAGACGGATCC
* * *
24081548 CCGACTTGCACATTCTGCCTCTCCGACCGGTTAAGCACCCGCACACTCGTTTTGTGGGTTAACTT
130 CCGACTTG-ACATTCTGCCACTCCGACCGGCTAAGCACCCGCACACTCGTTTCGTGGGTTAACTT
*
24081613 AGGCATACGAAGTACATTCCACATCTAAGCCCCACCCGGACCGAGGGTTGTGGCAGCAGGACCGG
194 AGGCATACGAAGTACATTCCACATCTAAGCCCCACCCGGACCAAGGGTTGTGGCAGCAGGACCGG
* *
24081678 CAGCGGGATCGACAGCACGCAGAGGGGGACCGAGCTAATCCCCGACTTCCGCATTATGCCACTCC
259 CAACAGGATCGACAGCACGCAGAGGGGGACCGAGCTAATCCCCGACTTCCGCATTATGCCACTCC
24081743 GGTCGGCCTTTTCGATCGGTTGAGCACACACACGCTCATTTTT
324 GGTCGGCCTTTTCGATCGGTTGAGCACACACACGCTCATTTTT
*
24081786 TGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCAT-AGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATGA-GAGTTCATTCCCAGTCTAA
* * * * * *
24081850 GATCGTACCA-GATCGAGGGTTACGGTAGCAAGATCGGTAGCAAGTAGGGGGGATCA-AGCTGAT
65 GATCGGA-CAGGATCGAGGGTTACGATAGCAAGATCGATAGCAAGCAGGAGGGATCAGA-CGGAT
** * * ** * **
24081913 CTTCGACTTG-TATTCTGCCACTCTGGTCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGGCT
128 CCCCGACTTGACATTCTGCCACTCCGACCGGCTAAGCACCCGCACACTCGTTTCGTGGGTTAACT
* * * * ** * *
24081977 TAGGCATATGGAGTA-ATTCCACGTCTAAGCGCCAGTCGGACCAAGGGTTGTGGCAGCATGACTG
193 TAGGCATACGAAGTACATTCCACATCTAAGCCCCACCCGGACCAAGGGTTGTGGCAGCAGGACCG
* * *
24082041 GCAACAGGATC-AGCAGCACGCAGAGGGGGACCGAGCTGATCCCC-AGCTTGCGCATTATGCCTC
258 GCAACAGGATCGA-CAGCACGCAGAGGGGGACCGAGCTAATCCCCGA-CTTCCGCATTATGCCAC
24082104 TCCGGTCGGC
321 TCCGGTCGGC
24082114 TAAGCAACCG
Statistics
Matches: 285, Mismatches: 38, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
363 2 0.01
364 106 0.37
365 57 0.20
366 2 0.01
367 75 0.26
368 43 0.15
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (366 bp):
TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATGAGAGTTCATTCCCAGTCTAAG
ATCGGACAGGATCGAGGGTTACGATAGCAAGATCGATAGCAAGCAGGAGGGATCAGACGGATCCC
CGACTTGACATTCTGCCACTCCGACCGGCTAAGCACCCGCACACTCGTTTCGTGGGTTAACTTAG
GCATACGAAGTACATTCCACATCTAAGCCCCACCCGGACCAAGGGTTGTGGCAGCAGGACCGGCA
ACAGGATCGACAGCACGCAGAGGGGGACCGAGCTAATCCCCGACTTCCGCATTATGCCACTCCGG
TCGGCCTTTTCGATCGGTTGAGCACACACACGCTCATTTTT
Found at i:24082486 original size:26 final size:26
Alignment explanation
Indices: 24082434--24082486 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
24082424 GTTGACTTAG
*
24082434 GCATACGGAGTTCATCCTCAGTCTAA
1 GCATACGGAGTTCATCCTCAGTATAA
* *
24082460 GCATATGGAGTTCA-CTTCTAGTATAA
1 GCATACGGAGTTCATCCTC-AGTATAA
24082486 G
1 G
24082487 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAGTATAA
Found at i:24083137 original size:26 final size:26
Alignment explanation
Indices: 24083107--24083157 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
24083097 GTTGACTTAG
24083107 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
24083133 GCATATGGAGTTCATTCCCAGTCTA
1 GCATATGGAGTTCATCCCCAGTCTA
24083158 GGATCAGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:24084951 original size:366 final size:352
Alignment explanation
Indices: 24084268--24085250 Score: 1005
Period size: 353 Copynumber: 2.7 Consensus size: 352
24084258 CGAACGCTTC
** * * *
24084268 TTTCATGGGTTGACTTAGTTATACGGAGTTCATCCCCAGTCTAAGGATATAGAGTTGATTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAG
* * * * * *
24084333 TCTAAGATCGGACCAGATCGAGGGTTGCGGTAGTAGGATCGGCAGCACGCAGGAGGGATCGAGCT
66 TCTAAGATCGAACCAGATCGAGGGTTGCGATAGTAGGATCGACAGCACGCAGGGGGGACCGA-CC
* * * * * *
24084398 GATCCCCGGC--CACATTCTGCCTCTCTTGTC-GGCTGAGTGCCCGCACGCTCATTCCGTGGGTT
130 GAT-CCTGGCTTCGCATTCTGCCTCTC-CGACTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTT
* * * *
24084460 GGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAATCGGAACGAGGGTTATGG-TGCCAG
193 GGCTTAGGCATAAGGAGTACATTCCACGTCTAAGCCCCAACCGGAACGAGGGTTGTGGCAG-CAG
* * * *
24084524 GACCGACGGCGGGATCAACAGCACGCAGAGGGGGATCGGGCTGATCCTCGGCTTACGCATTATGC
257 GACCGACAGCGGGATCAACAACACGCAGAGGGGGATCGGGCTAATCCTCGACTTACGCATTATGC
* *
24084589 CTCTCTGACCGACCTTTCCAACTAGCTGAGCACCCGTAAGCTCG
322 CTAT-T---CG-----GCC-A--A-CTGAGCACCCGTAAGCTCG
* **
24084633 TTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCCCTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAG
* * * **
24084698 TCTAAGATCGAACCGGATCGAGGGTTGCGACAGCAGGATCGATGGCACGCAGGGGGGACCGTACC
66 TCTAAGATCGAACCAGATCGAGGGTTGCGATAGTAGGATCGACAGCACGCAGGGGGGACCG-ACC
* * * *
24084763 GATCCTGACTTACGCATTCTACCTCTCCGACTGACTGAGTGCCCGCAC-CTCGTTTCGTGGGTTA
130 GATCCTGGCTT-CGCATTCTGCCTCTCCGACTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTG
** *
24084827 GCTTAGGCATAAGGAGTACATTCGGCGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGA
194 GCTTAGGCATAAGGAGTACATTCCACGTCTAAGCCCCAACCGGAACGAGGGTTGTGGCAGCAGGA
* * *** *
24084892 CCGGCAGTGGGATTGGCAACACGCAGAGGGGGA-CTGGGCTAATCCTCGACTTGCGCATTATGCC
259 CCGACAGCGGGATCAACAACACGCAGAGGGGGATC-GGGCTAATCCTCGACTTACGCATTATGCC
* * *
24084956 TATTCGGGCAACTGAGCGCCCGTACGCTCG
323 TATTCGGCCAACTGAGCACCCGTAAGCTCG
* * * *
24084986 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAG
* * * *
24085051 TCTAAGATC-AGACCAGATCGAAGGTTGC-AGTAGTAGGATCGACAGTACGTAGGGGGGACCGGG
66 TCTAAGATCGA-ACCAGATCGAGGGTTGCGA-TAGTAGGATCGACAGCACGCAGGGGGGACC-GA
* * * * * *
24085114 TCGATCCTCGGCTTGCGTATTCTGCCTCTCC-AGCTGGTTGAGCGCCCGCTCGCCCGTTTCGTGG
128 CCGATCCT-GGCTT-CGCATTCTGCCTCTCCGA-CTGGCTGAGTGCCCGCACGCTCGTTTCGTGG
* * * * * *
24085178 GTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTGTGGCAG
190 GTTGGCTTAGGCATAAGGAG-TACATTCCACGTCTAAGCCCCAACCGGAACGAGGGTTGTGGCAG
*
24085242 CGGGACCGA
254 CAGGACCGA
24085251 TAGCATGTAG
Statistics
Matches: 516, Mismatches: 88, Indels: 38
0.80 0.14 0.06
Matches are distributed among these distances:
352 2 0.00
353 131 0.25
354 34 0.07
355 71 0.14
356 2 0.00
357 1 0.00
362 2 0.00
364 4 0.01
365 114 0.22
366 126 0.24
367 29 0.06
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (352 bp):
TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAG
TCTAAGATCGAACCAGATCGAGGGTTGCGATAGTAGGATCGACAGCACGCAGGGGGGACCGACCG
ATCCTGGCTTCGCATTCTGCCTCTCCGACTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGC
TTAGGCATAAGGAGTACATTCCACGTCTAAGCCCCAACCGGAACGAGGGTTGTGGCAGCAGGACC
GACAGCGGGATCAACAACACGCAGAGGGGGATCGGGCTAATCCTCGACTTACGCATTATGCCTAT
TCGGCCAACTGAGCACCCGTAAGCTCG
Found at i:24085033 original size:26 final size:26
Alignment explanation
Indices: 24085004--24085056 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24084994 GTTGGCTTAG
24085004 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24085030 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24085056 G
1 G
24085057 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24085513 original size:158 final size:158
Alignment explanation
Indices: 24085030--24085531 Score: 501
Period size: 158 Copynumber: 3.2 Consensus size: 158
24085020 CCCAGTCTAA
* * * *
24085030 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGATCGAAGGTTGC-AGTAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATTAAACCAGATCGAAGGTTGCGA-CAGCAGGATCGA
* * * * * *
24085093 CAGTACGTAGGGGGGACCGGGTCGATCCTCGGCTTGCGTATTCTGCCTCTCC-AGCTGGTTGAGC
64 TAGCATGTAAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CTGGTTGAGC
* *
24085157 GCCCGCTCGCCCGTTTCGTGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * * * *
24085188 GCATAGGGAGCTCATTCCATGTCTAAGCCCT-AGCCAGATCGAGGGTTGTGGCAGCGGGACCGAT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATTAAACCAGATCGAAGGTTGCGACAGCAGGATCGAT
* * ** ** * * *
24085252 AGCATGTAGAGGGCGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTTGGTTGGCTCAGCA
65 AGCATGTA-AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGTTGAGCG
* * *
24085317 CCCGTACGCTCGTTTCGTGGGTTGACTTAT
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
24085347 GCAAACGGAGTTCATTCCCA-GTCTAAGATTAAACCGGACCAAAGGTTGCGACAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATTAAACCAGATCGAAGGTTGCGACAGCAGGATCGAT
* * * * * *
24085411 AGCATGCAAGGGGGATCGGGTCAATCCCCGACTTGCGCATTCTACCTCTCCGACCGGTTGAGCGC
65 AGCATGTAAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGTTGAGCGC
* *
24085476 CCGCACGCTCATTTCGTGAGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
24085505 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
24085532 CATACGGAGT
Statistics
Matches: 267, Mismatches: 69, Indels: 16
0.76 0.20 0.05
Matches are distributed among these distances:
157 6 0.02
158 139 0.52
159 119 0.45
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATTAAACCAGATCGAAGGTTGCGACAGCAGGATCGATA
GCATGTAAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGTTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:24085541 original size:26 final size:26
Alignment explanation
Indices: 24085505--24085559 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
24085495 GTTGGCTTAG
24085505 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
24085531 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
24085557 GCA
1 GCA
24085560 ATTGGGGGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:24086597 original size:159 final size:160
Alignment explanation
Indices: 24086341--24086806 Score: 450
Period size: 159 Copynumber: 2.9 Consensus size: 160
24086331 CGAACCGGAT
* * * * * *
24086341 CAAGGGTTGCGGCAGCAGGATCGATAGCAC-GCAAG-GG-GGACCGAGCCGATCCCCGGCTTGCG
1 CAAGGGTTGCAGCAGCAGGATAGATAGCACAG--AGCGGTGGACCGAGTCAATCCCCGGCTTACA
* * * * *
24086403 CATTCTGCCTCTCCGGTCTGCTAAGCGCCCGCACGC-CTATTTCGTGGGTTGGCTTAGGCATAGG
64 CATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCTC-ATTTCGTGGGTTGGCTTAGGCATACG
* * *
24086467 GAGCTCATTCCATGTCTAAGCCCCAG-CCGGAC
128 GAGTTCATTCCATGTCTAAGCACCAGACCAGAC
* * * *
24086499 CAAGGGTT-CTGGTAGCAGGACTAG-TAGCAC-GTAGACGG-GGACCGGGTCAATCCCTGGCTTA
1 CAAGGGTTGC-AGCAGCAGGA-TAGATAGCACAG-AG-CGGTGGACCGAGTCAATCCCCGGCTTA
* * * * * * *
24086560 CGCATTATGCCTCTTCGA-CTGGCTTAGTGGCCGCACGCTCATTTCGTGGGTTGACTTATGCATA
62 CACATTATGCCTCTCCGATC-GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
* * *
24086624 CAGAGTTCATTCCAAGTCTAAG-ATCAGACCAGAC
126 CGGAGTTCATTCCATGTCTAAGCACCAGACCAGAC
** * * * *
24086658 TGAGGGTTGCAGCAGCAGGATCGATAGCACAGAGGGGTGGACTGAGTCGATCCCCGGCTTACACA
1 CAAGGGTTGCAGCAGCAGGATAGATAGCACAGAGCGGTGGACCGAGTCAATCCCCGGCTTACACA
* * *
24086723 TTCTGCCTCTCCGATCGGCTGAGCGCCCGTACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAG
66 TTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAG
24086788 TTCATTCCATGTCTAAGCA
131 TTCATTCCATGTCTAAGCA
24086807 TACGAAGCTC
Statistics
Matches: 249, Mismatches: 46, Indels: 24
0.78 0.14 0.08
Matches are distributed among these distances:
157 3 0.01
158 32 0.13
159 209 0.84
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (160 bp):
CAAGGGTTGCAGCAGCAGGATAGATAGCACAGAGCGGTGGACCGAGTCAATCCCCGGCTTACACA
TTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCACCAGACCAGAC
Found at i:24087523 original size:26 final size:26
Alignment explanation
Indices: 24087494--24087546 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24087484 GTTGACTTAG
* *
24087494 GCATACGGAGTTC-TTCTCTAGTCTAA
1 GCATAAGGAGTTCATTC-CCAGTCTAA
24087520 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
24087546 G
1 G
24087547 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:24087729 original size:184 final size:184
Alignment explanation
Indices: 24087469--24087879 Score: 450
Period size: 184 Copynumber: 2.2 Consensus size: 184
24087459 GAGCGCCTGT
* * * *
24087469 ACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTC-TTCTCTAGTCTAAGCATAAGGAGTTC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTACATTC-CCAATCTAAGCATAAGGAGTTC
* *** *** * * * * * * * * *
24087533 ATTCCCAGTCTAAGATTGGACTGGATCGAGGGTTACGGCAGTAGGATCGACAACATGCATGGGGG
65 ATACCCAGTCTAAGATCAAACCAAATCAAAGATTACAGCAGCAAGATCAACAACACGCAGGGGGG
* * * * *
24087598 A-CGGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTCGACCGACTGAGCA-CCCAC
130 ATC-GGGCCAATCCCCGGCTTGAGCATTCTACCTCTCCGACCGACTGAG-AGCCCAC
* * * * *
24087653 ACGCTCGTTTCATGGGTTGTCTTAGGCATATGAAGTACATTCCCAATCTAAGCATACGGAGTTCA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTACATTCCCAATCTAAGCATAAGGAGTTCA
* *
24087718 TACCCAGTCTAAGATCAAACCAAATCAAAGATTGCAGCAGCAAGATCAACAGCACGCAGGGGGGA
66 TACCCAGTCTAAGATCAAACCAAATCAAAGATTACAGCAGCAAGATCAACAACACGCAGGGGGGA
* **
24087783 TCGGGCCAATCCCCGGCTTGAGCATTCTACCTCTCCGGCCGACTGAGAGCCTGC
131 TCGGGCCAATCCCCGGCTTGAGCATTCTACCTCTCCGACCGACTGAGAGCCCAC
*
24087837 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTACATTCC
24087880 ACGTCTAAAC
Statistics
Matches: 185, Mismatches: 39, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
183 1 0.01
184 180 0.97
185 4 0.02
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (184 bp):
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTACATTCCCAATCTAAGCATAAGGAGTTCA
TACCCAGTCTAAGATCAAACCAAATCAAAGATTACAGCAGCAAGATCAACAACACGCAGGGGGGA
TCGGGCCAATCCCCGGCTTGAGCATTCTACCTCTCCGACCGACTGAGAGCCCAC
Found at i:24088072 original size:26 final size:26
Alignment explanation
Indices: 24088034--24088084 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
24088024 TTGACTTAGG
* *
24088034 CATACGGAGTTCATCCCAAGTCTAAA
1 CATACGAAATTCATCCCAAGTCTAAA
* *
24088060 CATACGAAATTCATTCCTAGTCTAA
1 CATACGAAATTCATCCCAAGTCTAA
24088085 GATCAGACCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.27
Consensus pattern (26 bp):
CATACGAAATTCATCCCAAGTCTAAA
Found at i:24088129 original size:355 final size:356
Alignment explanation
Indices: 24087575--24088517 Score: 1152
Period size: 355 Copynumber: 2.7 Consensus size: 356
24087565 TTACGGCAGT
* * * * * * * *
24087575 AGGATCGACAACATGCA-TGGGGGA-CGGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTCGAC
1 AGGATCGACAGCACGCAGAGGGGGATCGGGCT-GATCCTCGGCTTGCGCATTATGCCTCTCCGAC
** * * * * *
24087638 CGA-CTGAGCACCCACACGCTCGTTTCATGGGTTGTCTTAGGCATATGAAGTACATTCCCAA-TC
65 CGATCTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCAAGTC
* * * * *
24087701 TAAGCATACGGAGTTCATACCCAGTCTAAGATCAAACCAAATCAAAGATTGCAGCAGCAAGATCA
129 TAAGCATACGGAGTTCATACCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGCAGCAAGATCA
* * *
24087766 ACAGCACGCAGGGGGGATCGGGCCAATCCCCGGCTTG-AGCATTCTACCTCTCCGGCCGACTGAG
194 ACAGCACGCAGGGGGGACCGGGCCAATCCCCGACTTGCA-CATTCTACCTCTCCGGCAGACTGAG
24087830 AGC-CTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAACCCCA
258 AGCTC-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAACCCCA
*
24087894 G-CTGGACTGAGGGTTGTGGCAGCAAGACTGGCAAC
322 GCCT-GACTGAGGGTTGTGGCAGCAAGACCGGCAAC
* *
24087929 AGGATCTACAGCACGCAGAGGGGGATCGGGCTGATCCTCGGCTTGCGCATTATGCCTCTCCGGCC
1 AGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCTCGGCTTGCGCATTATGCCTCTCCGACC
24087994 -ATCTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTA
66 GATCTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTA
* * * * * *
24088058 AACATACGAAATTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTGC-GACAGCAGGATCAA
131 AGCATACGGAGTTCATACCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAG-CAGCAAGATCAA
* * * * * * *
24088122 CAGCACGCAGGGGGGACCGGGTCGATCCTCGACTTGCACATTCTGCCTCTCCGGTAGGCTGAGCG
195 CAGCACGCAGGGGGGACCGGGCCAATCCCCGACTTGCACATTCTACCTCTCCGGCAGACTGAGAG
* * * *
24088187 CTCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTACATTCGACGTCTAAGCCCTAGCC
260 CTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAACCCCAGCC
* **
24088252 TGACTGAGGGTTGTGGCAGCAGGACCGGCAGT
325 TGACTGAGGGTTGTGGCAGCAAGACCGGCAAC
* * * * *
24088284 AGGATCGACAGCATGCAGAGGGGGATCGGGCTGATCTTCGACGTACGCATTATGCCTCTCCGACC
1 AGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCTCGGCTTGCGCATTATGCCTCTCCGACC
* ** * * * *
24088349 GGT-TGAGTGCCCGTACGCTTGTTTCGTGCGTTGACTTAGGTATACGGAGTTCATCCCCAGTCTA
66 GATCTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTA
* **
24088413 AGCATATGGAGTTCATACCCAGTCTAAGATCAGACC-GAATCGAGGGTTGCAGCAGCAAGATCGG
131 AGCATACGGAGTTCATACCCAGTCTAAGATCAGACCAG-ATCGAGGGTTGCAGCAGCAAGATCAA
* * * * *
24088477 CAGCACGTAAGAGGGACCGGGCCGATCCTCGACTTGCACAT
195 CAGCACGCAGGGGGGACCGGGCCAATCCCCGACTTGCACAT
24088518 AAAAATGGTA
Statistics
Matches: 505, Mismatches: 73, Indels: 21
0.84 0.12 0.04
Matches are distributed among these distances:
354 23 0.05
355 471 0.93
356 11 0.02
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (356 bp):
AGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCTCGGCTTGCGCATTATGCCTCTCCGACC
GATCTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTA
AGCATACGGAGTTCATACCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGCAGCAAGATCAAC
AGCACGCAGGGGGGACCGGGCCAATCCCCGACTTGCACATTCTACCTCTCCGGCAGACTGAGAGC
TCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAACCCCAGCCT
GACTGAGGGTTGTGGCAGCAAGACCGGCAAC
Found at i:24088553 original size:31 final size:31
Alignment explanation
Indices: 24088515--24088576 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
24088505 TCGACTTGCA
*
24088515 CATAAAAATGGTATTAGCATGGCAGAAATAT
1 CATAAAAATGGTATTAGCACGGCAGAAATAT
24088546 CATAAAAATGGTATTAGCACGGCAGAAATAT
1 CATAAAAATGGTATTAGCACGGCAGAAATAT
24088577 GAAGATGTGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.45, C:0.11, G:0.19, T:0.24
Consensus pattern (31 bp):
CATAAAAATGGTATTAGCACGGCAGAAATAT
Found at i:24088718 original size:26 final size:26
Alignment explanation
Indices: 24088682--24088734 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24088672 GTTGACCTAG
* *
24088682 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
24088708 GCATACAGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
24088734 G
1 G
24088735 ATTAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:24089067 original size:26 final size:26
Alignment explanation
Indices: 24089037--24089089 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24089027 GTTGACTTAG
24089037 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
24089063 GCATATGGAGTTCATTCCCAGTTTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
24089089 G
1 G
24089090 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:24090280 original size:26 final size:26
Alignment explanation
Indices: 24090244--24090296 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24090234 GTTGACTTAG
*
24090244 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
24090270 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
24090296 G
1 G
24090297 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:24091275 original size:25 final size:26
Alignment explanation
Indices: 24091230--24091281 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
24091220 GTTGACTTAG
*
24091230 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24091256 GCATACGGAG-TCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24091281 G
1 G
24091282 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24091633 original size:26 final size:26
Alignment explanation
Indices: 24091597--24091649 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24091587 GTTGACTTAG
*
24091597 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24091623 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24091649 G
1 G
24091650 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24091987 original size:158 final size:158
Alignment explanation
Indices: 24091697--24092112 Score: 374
Period size: 157 Copynumber: 2.6 Consensus size: 158
24091687 AGCACGCAGG
* * * * * * * * * * *
24091697 GGGGGATCGGGCCGATCCCCGGCTTGCGCATT-TGCCTCTCCGATCGGTTGAGCACCCGCACACC
1 GGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGACTTTCAGACCAGCTCAGCACCCGCACGCT
* * * * * * * ** **
24091761 CATTTTGTGGGTTGGCTTAGGCATAAGGAGCTCA-TTCCATGTCTAAG-CCCCATCTAGATCGAG
66 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCA-ATCTAAGATCGGAT-GGGATCGAG
* *
24091824 GGTTGTGGCAGCAAGACCGACAGCACGCGGA
129 GGTTGTGGCAGCAAGACCGACAACACGC-AA
* * * *** **
24091855 GGGGGATCGGGCCGATCCCCGGTTTGCGCATTATGACTCTTCAG-TTGGCTCAGGGCCCGCACGC
1 GGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGACT-TTCAGACCAGCTCAGCACCCGCACGC
*
24091919 TCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTTCCAATCTAAGATCGGATGGGATCGA-G
65 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAATCTAAGATCGGATGGGATCGAGG
* * *
24091983 GTTGTGGTAGCAGGATCGACAACACGCAA
130 GTTGTGGCAGCAAGACCGACAACACGCAA
* * * * * *
24092012 GGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTGCCTTTCCGACCAGCTGAGCACCCGCACGCT
1 GGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGACTTTCAGACCAGCTCAGCACCCGCACGCT
*
24092077 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
66 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
24092113 CCATGTCTAA
Statistics
Matches: 209, Mismatches: 44, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
156 4 0.02
157 81 0.39
158 55 0.26
159 58 0.28
160 11 0.05
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGACTTTCAGACCAGCTCAGCACCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAATCTAAGATCGGATGGGATCGAGGG
TTGTGGCAGCAAGACCGACAACACGCAA
Found at i:24092147 original size:26 final size:26
Alignment explanation
Indices: 24092100--24092149 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
24092090 GGCTTAGGCA
* *
24092100 TACGGAGTTCATTCCATGTCTAAGCG
1 TACGGAGCTCATTCCATATCTAAGCG
24092126 TACGGAGCTCATTCCCA-ATCTAAG
1 TACGGAGCTCATT-CCATATCTAAG
24092150 ATTTTAAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGCTCATTCCATATCTAAGCG
Found at i:24092848 original size:26 final size:26
Alignment explanation
Indices: 24092818--24092870 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24092808 GTTGACTTAG
* *
24092818 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGACTTCATCCCCAGTCTAA
*
24092844 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
24092870 G
1 G
24092871 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAGTCTAA
Found at i:24093217 original size:26 final size:26
Alignment explanation
Indices: 24093187--24093237 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
24093177 TGACTTAGGC
24093187 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
*
24093213 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
24093238 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:24093487 original size:367 final size:367
Alignment explanation
Indices: 24092778--24093545 Score: 875
Period size: 367 Copynumber: 2.1 Consensus size: 367
24092768 CCTCTCTGGT
* * *
24092778 CGGCTAAGCGTCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTTTA
1 CGGCTGAGTGTCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* *
24092843 AGCATACGGACTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGTAGCAGGATCGACA
66 AGCATACGGACTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGCAGCAGGATCGACA
* * * * ** * * * *
24092908 GCACGCAGGTGGGACCAGGTCGATCCTTGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGTGCC
131 ACACGCAGGTAGGAACAGGCCGATCCCCGACTTGCGCATTCTGCATCTCCGCTCGACTGAGCGCC
* * *
24092973 CGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTTCACGTCTAGGCCCCAGCCGG
196 CGGACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCGG
* * * * *
24093038 ACCGAGGCTTGTGGTAGCAGGACCGGCAACGAGACCGGCAGCACGCAAAGGGGGACCAGGCTAAT
261 ACCAAGGCTTGTGGCAGCAGGACCGACAACGAGACCGACAGCACACAAAGGGGGACCAGGCTAAT
* * *
24093103 CCGCGGCTTGTGCATTATGCCTCT-CTGACCAGCCTCTCCGGC
326 CCGCGACTTGCGCATTATGCCTCTAC-GACCAGCCTCTCCGAC
* *
24093145 TGGCTGAGTGTCCGCACGCTTATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGCTGAGTGTCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * * **
24093210 AGTATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGTAGGATCGGT
66 AGCATACGGACTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTAC-GCAGCAGGATCGAC
** * * *
24093275 AACACGCAGG-AGGAATGGGCCGTTCCCCGACTTGCGCATTCTTCATCTCCGACT-GGCTGAGCG
130 AACACGCAGGTAGGAACAGGCCGATCCCCGACTTGCGCATTCTGCATCTCCG-CTCGACTGAGCG
* * * * *
24093338 CCTGGGCGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCTCCAGTC
194 CCCGGACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCC
* * * * * * * * * * * *
24093403 TGATCAAGGGTTGTGGCAGCGGGACCGAC-A-GTAGGATCGATAGCTCATAGAGGGGGATCGGGT
259 GGACCAAGGCTTGTGGCAGCAGGACCGACAACG-A-GACCGACAGCACACAAAGGGGGACCAGGC
* * *
24093466 TGATCTC-CGACTTGCGCATTATGCCTCTACGATCGGCCTCTCCGAC
322 TAATC-CGCGACTTGCGCATTATGCCTCTACGACCAGCCTCTCCGAC
* *
24093512 CGGTTGAGTG-CCTGCATGCTTGTTTCATGGGTTG
1 CGGCTGAGTGTCC-GCACGCTTGTTTCATGGGTTG
24093546 TGGCAGTAGG
Statistics
Matches: 331, Mismatches: 63, Indels: 14
0.81 0.15 0.03
Matches are distributed among these distances:
365 1 0.00
366 4 0.01
367 304 0.92
368 22 0.07
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (367 bp):
CGGCTGAGTGTCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
AGCATACGGACTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGCAGCAGGATCGACA
ACACGCAGGTAGGAACAGGCCGATCCCCGACTTGCGCATTCTGCATCTCCGCTCGACTGAGCGCC
CGGACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCGG
ACCAAGGCTTGTGGCAGCAGGACCGACAACGAGACCGACAGCACACAAAGGGGGACCAGGCTAAT
CCGCGACTTGCGCATTATGCCTCTACGACCAGCCTCTCCGAC
Found at i:24093869 original size:26 final size:26
Alignment explanation
Indices: 24093840--24093892 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24093830 GTTGACTTAG
24093840 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
24093866 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24093892 G
1 G
24093893 ATCGGACAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24094389 original size:26 final size:26
Alignment explanation
Indices: 24094341--24094391 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
24094331 TGGCTTAGGT
* *
24094341 ATACGGAGTTCATTCCATGTCTAAGC
1 ATACGGAGCTCATTCCATATCTAAGC
24094367 ATACGGAGCTCATTCCCA-ATCTAAG
1 ATACGGAGCTCATT-CCATATCTAAG
24094392 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGCTCATTCCATATCTAAGC
Found at i:24095099 original size:26 final size:26
Alignment explanation
Indices: 24095063--24095115 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24095053 GTTAACTTAG
24095063 GCATACAGAGTTCATCCCCAATATAA
1 GCATACAGAGTTCATCCCCAATATAA
* * *
24095089 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATATAA
24095115 G
1 G
24095116 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATATAA
Found at i:24095464 original size:25 final size:25
Alignment explanation
Indices: 24095430--24095477 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
24095420 GTTGACTTAG
24095430 GCATACGGAGTTCATCCCCAGTCAA
1 GCATACGGAGTTCATCCCCAGTCAA
*
24095455 GCATACGGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATCCCCAGTC
24095478 TAAGATTGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCCAGTCAA
Found at i:24095846 original size:26 final size:26
Alignment explanation
Indices: 24095798--24095850 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24095788 ATTGACTTAG
*
24095798 GCATACGGAGTTCATCCGTAGTCTAA
1 GCATACGGAGTTCATCCGCAGTCTAA
24095824 GCATACGGAGTTCATTCC-CAGTCTAA
1 GCATACGGAGTTCA-TCCGCAGTCTAA
24095850 G
1 G
24095851 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCGCAGTCTAA
Found at i:24095969 original size:368 final size:362
Alignment explanation
Indices: 24095032--24097109 Score: 1847
Period size: 368 Copynumber: 5.7 Consensus size: 362
24095022 TCGGCTGAGT
* * * * *
24095032 GCCCGCGCGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATCCCCAATATAAGCATACGG
1 GCCCGCACGCTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
* * * *
24095097 AGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATCGGTAGCACACAA
65 AGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAG
* * * * * * * *
24095162 GGGGGA-CCAGACCGATCCCCT-ACTTACATATTCTGCCTCTCCGACCGGCTGAGTGCTCGCACG
130 GGGGGATCGAG-TCGAT-CCCTGACTTGCGTATTCTGCCTCTCCGATCGACTGAGCGCCCGCACG
* * * * * ** *
24095225 CTCGTTTTATGGGTTGGCTTAGGCATATGGAGGACATTCCATGTCTAAACCCCAG-CCAATCTGA
193 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGA-CCGA
* * * * *
24095289 GGGTTGTGGTAGCAGGACCGGTAGCGGGATTGGCAGCTTG--TAGAGAGGATCGAGCTGATCCCC
257 GGGTTGTGGCAGCAGGACCGGTAGCGAGATCGACAGCATGCATAGAG-GGATCGAGCTGATCCCC
* * * * * ** *
24095352 GACTTGCACATTATGCCTCTCTGGCCGACCTCTCTAGCCGGCTGAGC
321 GGCTTGCGCATTATGCCT-TC--ACCGGCCTC-C-GGCTTGCTAAGC
* * * *
24095399 GCCCACATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC-AAGCATACGG
1 GCCCGCACGCTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
** * * * * *
24095463 AGTTCATTCCCAGTCTAAGATTGGATCAGATCGAGGGTTGCGACAGCAAGATCTGTAGCATGCAG
65 AGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAG
* * * * **
24095528 GGGGCGACCGAGTCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGACTAAGTACCCGCACGC
130 GGGG-GATCGAGTCGATCCCTGACTTGCGTATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGC
* * *
24095593 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAG-CTGGACTGAG
194 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTC-GGACCGAG
* *
24095657 GGTTGTGGCAGCAGGACCGGTAGCGAGATCGATAGCATGCATAGAGGGATCAAGCTGATCCCCGG
258 GGTTGTGGCAGCAGGACCGGTAGCGAGATCGACAGCATGCATAGAGGGATCGAGCTGATCCCCGG
* * * *
24095722 CTTGTGTAATAGGCCTTTTCGACCGGCCTCTCAGGCTTGCTAAGC
323 CTTGCGCATTATGCC--TTC-ACCGGCCTC-C-GGCTTGCTAAGC
* **
24095767 ACCCGCACGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCATCCGTAGTCTAAGCATACGG
1 GCCCGCACGCTCGTTTCGTGG-TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
* * ** * *
24095832 AGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTGCGGCAGCAGGATCAACGGCACCCAG
65 AGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAG
* * *
24095897 GGGGGATCGAGTTGATCCCTGGCTTGCGTATGCTGCCTCTCCGATCGACTGAGCGCCCGCACGCT
130 GGGGGATCGAGTCGATCCCTGACTTGCGTATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCT
* * * *
24095962 TGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCACAGTCAGACCGAGGG
195 CGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGACCGAGGG
* * * * * * * * *
24096027 TTGTGGTAGCAGGACCAGCAGC-AGGATCGACAGCATGCAGAGGGGGATCGGGCTAATCCCTGAC
260 TTGTGGCAGCAGGACCGGTAGCGA-GATCGACAGCATGCATAGAGGGATCGAGCTGATCCCCGGC
* * * *
24096091 TTGCGCATTATGCCTATCCAATCAGCCTCCCTGGC-CGACTGAGC
324 TTGCGCATTATGCCT-T-C-ACCGGCCT-CC-GGCTTG-CTAAGC
* * * * *
24096135 GCCCGTACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGAATACGG
1 GCCCGCACGCTCGTTTCGTG-GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
* * * * * * * **
24096200 AGTTCATTCCCAGTCTAAGATCA-AACTGGATTGATGGTTACGGCAGTAGGATCGGTAGCACAAA
65 AGTTCATTCCCAGTCTAAGATCAGATC-GGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGCA
* * * * * *
24096264 GGGGGGATCGGGTCGATCCC-CAGCTTACGCATTCTGCCTCTCCGATCGACTGAGCACCCGCACA
129 GGGGGGATCGAGTCGATCCCTGA-CTTGCGTATTCTGCCTCTCCGATCGACTGAGCGCCCGCACG
** * *
24096328 CTCGTTTTGTGGGTTGGCTTAGGCATGCAGAGTACATTCCACGTCTAAGCCCCAGTCGGACCGAG
193 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGACCGAG
* * * *
24096393 GGTTGTGGCAGTAGGACCGATAGCG-GTATCGACAGCATG--TAGATGGGGATCGAACTGATCCT
258 GGTTGTGGCAGCAGGACCGGTAGCGAG-ATCGACAGCATGCATAGA--GGGATCGAGCTGATCCC
* * * *
24096455 CGGCTTACGCATTATG-CATCTCCTG---CCGG-TTG---AGC
320 CGGCTTGCGCATTATGCCTTCACCGGCCTCCGGCTTGCTAAGC
* * * *
24096490 GCCCGCACACTCGTTTCATTGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAGCATATGG
1 GCCCGCACGCTCGTTTC-GTGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
* * ** * * *
24096555 AGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGGTAGCAGGATCGACAGCACGTAA
65 AGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAG
* * ** * * * *
24096620 AGGGGATCGGGTCGAT-CCTCGACTTGCGTATTCTATCTCTTCG-GCTGGCTGAGCGCCCGGACG
130 GGGGGATCGAGTCGATCCCT-GACTTGCGTATTCTGCCTCTCCGATC-GACTGAGCGCCCGCACG
* * * *
24096683 CTTC-TTTCATGGGTTGACTTAGGCATACGGAGTACAATCCACGTCGAAGCCCCAGTTGGACCGA
193 C-TCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGACCGA
** * * * * * * * *
24096747 GGGTTGTGGCAGCAGGACCGACAGTGGGATCGACAGTACGCAGAGGGGGATCGGGCTGA-CCCCA
257 GGGTTGTGGCAGCAGGACCGGTAGCGAGATCGACAGCATGCATAGAGGGATCGAGCTGATCCCCG
* * * **
24096811 GCTTACACATTATGCC-TC-TC--CAACCGG-TTG--AA-C
322 GCTTGCGCATTATGCCTTCACCGGCCTCCGGCTTGCTAAGC
* * * *
24096844 GCCTGCACGTTCGTTTCGTAGGTTGACTTAAGCATACGAAGTTCATCCCCAGTCTAAGCATACGG
1 GCCCGCACGCTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
** * * *
24096909 AGTTCATTCCCAGTCTAAGATTGGATTGGA-CTGAGGGTTGCGACAGCATGATCGGCAGCACGCT
65 AGTTCATTCCCAGTCTAAGATCAGATCGGATC-GAGGGTTGCGACAGCAGGATCGGCAGCACGCA
* * * * * * * * *
24096973 GGGGGGACCG-GGCTGATCCCTGGCTTGCGCAATCTGCCTCTCCGA-CTGGCTAAGAGCCTGCAC
129 GGGGGGATCGAGTC-GATCCCTGACTTGCGTATTCTGCCTCTCCGATC-GACTGAGCGCCCGCAC
* * * * *
24097036 GCCCGTTTCATGGGTTGGCTGAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAGTCGGACTG
192 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCCCAGTCGGACCG
24097100 AGGGTTGTGG
256 AGGGTTGTGG
24097110 TAGTGGGATC
Statistics
Matches: 1410, Mismatches: 256, Indels: 103
0.80 0.14 0.06
Matches are distributed among these distances:
353 5 0.00
354 238 0.17
355 258 0.18
356 8 0.01
357 2 0.00
359 3 0.00
360 2 0.00
364 2 0.00
365 1 0.00
366 78 0.06
367 180 0.13
368 555 0.39
369 77 0.05
370 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (362 bp):
GCCCGCACGCTCGTTTCGTGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGG
GGGGATCGAGTCGATCCCTGACTTGCGTATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTC
GTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGACCGAGGGT
TGTGGCAGCAGGACCGGTAGCGAGATCGACAGCATGCATAGAGGGATCGAGCTGATCCCCGGCTT
GCGCATTATGCCTTCACCGGCCTCCGGCTTGCTAAGC
Found at i:24096197 original size:26 final size:26
Alignment explanation
Indices: 24096168--24096219 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
24096158 TGACTTAGGC
*
24096168 ATACGGAGTTTATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
24096194 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
24096220 TCAAACTGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:24096550 original size:26 final size:26
Alignment explanation
Indices: 24096521--24096573 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24096511 GTTGACTTAG
*
24096521 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24096547 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24096573 G
1 G
24096574 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24096751 original size:723 final size:726
Alignment explanation
Indices: 24095027--24097109 Score: 1937
Period size: 723 Copynumber: 2.9 Consensus size: 726
24095017 TCTGGTCGGC
* * * * * * *
24095027 TGAGTGCCCGCGCGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATCCCCAATATAAGCA
1 TGAGCGCCCGCACGCTCGTTTC-TTGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* * **
24095092 TACGGAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATCGGTAGCA
65 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCA
* * ** * * * * * * * *
24095157 CACAAGGGGGACCAGACCGATCCCCTACTTACATATTCTGCCTCTCCGACCGGCTGAGTGCTCGC
130 CACAAGGGGGATCGGGTCGAT-CCCGACTTGCGTATTCTGCCTCTTCGGCTGGCTGAGCGCCCGC
* * * * * *
24095222 ACGC-TCGTTTTATGGGTTGGCTTAGGCATATGGAGGACATTCCATGTCTAAACCCCAGCCA-AT
194 ACGCTTC-TTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCAGA-
* * * * * * * * *
24095285 CTGAGGGTTGTGGTAGCAGGACCGGTAGCGGGATTGGCAGCTTGTAGA-GAGGATCGAGCTGATC
257 CCGAGGGTTGTGGTAGCAGGACC-GCAGCGGGATCGACAGCATGCAGAGGGGGATCGGGCTAATC
* ** * * * *
24095349 CCCGACTTGCACATTATGCCTCTCTGGCCGACCTCTCTAGCCGGCTGAGCGCCCACATGCTCATT
321 CCCGACTTGCACATTATGCCTATCAAGCAGACCTCCCTAGCCGACTGAGCGCCCACACGCTCATT
** * *
24095414 TTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCAAGCATACGGAGTTCATTCCCAGTCT
386 TCATGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCAAGAATACGGAGTTCATTCCCAGTCT
*** * * ***
24095479 AAGATTGGATCAGATCGAGGGTTGCGACAGCAAGATCTGTAGCATGCAGGGGGCGACCGAGTCGA
451 AAGATCAAATCAGATCGAGGGTTACGACAGCAAGATCGGTAGCACAAAGGGGGCGACCGAGTCGA
* * * * *
24095544 TCCCTGACTTGCGCATTCTGCCTCTCCGGTCGACTAAGTACCCGCACGCTCGTTTCGTCGGTTGG
516 TCCCAGACTTACGCATTCTGCCTCTCCGATCGACTAAGCACCCGCACACTCGTTTCGTCGGTTGG
* *
24095609 CTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCTGGACTGAGGGTTGTGGCAGCAGGAC
581 CTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCAGGAC
* * ** *
24095674 CGGTAGCGAGATCGATAGCATGCATAGAGGGATCAAGCTGATCCCCGGCTTGTGTAATAGGCCTT
646 CGATAGCGAGATCGACAGCATG-ATAGAGGGATCAAGCTGATCCCCGGCTTACGCAATAGGCC-T
*
24095739 TTCGACCGGCCTCTCAGGCT
709 ATCGACCGG-C-CTCAGGCT
* * **
24095759 TGCTAAGCACCCGCACGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCATCCGTAGTCTAA
1 TG---AGCGCCCGCACGCTCGTTTCTTGG-TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * *
24095824 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTGCGGCAGCAGGATCAACG
62 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * * *
24095889 GCACCCAGGGGGGATCGAGTTGATCCCTGGCTTGCGTATGCTGCCTC-TCCGATCGACTGAGCGC
127 GCACACAAGGGGGATCGGGTCGATCCC-GACTTGCGTATTCTGCCTCTTCGGCT-GGCTGAGCGC
* * *
24095953 CCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCACAGTCA
190 CCGCACGCTTCTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCA
*
24096018 GACCGAGGGTTGTGGTAGCAGGACCAGCAGCAGGATCGACAGCATGCAGAGGGGGATCGGGCTAA
255 GACCGAGGGTTGTGGTAGCAGGACC-GCAGCGGGATCGACAGCATGCAGAGGGGGATCGGGCTAA
* * * * **
24096083 TCCCTGACTTGCGCATTATGCCTATCCAATCAG-CCTCCCTGGCCGACTGAGCGCCCGTACGCTC
319 TCCCCGACTTGCACATTATGCCTAT-CAAGCAGACCTCCCTAGCCGACTGAGCGCCCACACGCTC
* * *
24096147 GTTTCATGAGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGAATACGGAGTTCATTCCCA
383 ATTTCATGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTC-AAGAATACGGAGTTCATTCCCA
* * * * * * * *
24096212 GTCTAAGATCAAA-CTGGATTGATGGTTACGGCAGTAGGATCGGTAGCACAAAGGGGG-GATCGG
447 GTCTAAGATCAAATC-AGATCGAGGGTTACGACAGCAAGATCGGTAGCACAAAGGGGGCGACCGA
* * *
24096275 GTCGATCCCCAG-CTTACGCATTCTGCCTCTCCGATCGACTGAGCACCCGCACACTCGTTTTGTG
511 GTCGAT-CCCAGACTTACGCATTCTGCCTCTCCGATCGACTAAGCACCCGCACACTCGTTTCGTC
*
24096339 GGTTGGCTTAGGCATGCAGAGTACATTCCACGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCA
575 GGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGCT-GGACCGAGGGTTGTGGCA
* *
24096403 GTAGGACCGATAGCG-GTATCGACAGCATG-TAGATGGGGATCGAA-CTGATCCTCGGCTTACGC
639 GCAGGACCGATAGCGAG-ATCGACAGCATGATAGA--GGGATC-AAGCTGATCCCCGGCTTACGC
* * * *
24096465 ATTATG-C-ATC-TCCTG-C-C-GG-T
700 AATAGGCCTATCGACCGGCCTCAGGCT
* *
24096485 TGAGCGCCCGCACACTCGTTTCATTGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTC-TTGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* * * *
24096550 TATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGGTAGCAGGATCGACAGCA
65 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCA
** * ** *
24096615 CGTAAAGGGGATCGGGTCGATCCTCGACTTGCGTATTCTATCTCTTCGGCTGGCTGAGCGCCCGG
130 CACAAGGGGGATCGGGTCGATCC-CGACTTGCGTATTCTGCCTCTTCGGCTGGCTGAGCGCCCGC
* * * **
24096680 ACGCTTCTTTCATGGGTTGACTTAGGCATACGGAGTACAATCCACGTCGAAGCCCCAGTTGGACC
194 ACGCTTCTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCAGACC
* * * * *
24096745 GAGGGTTGTGGCAGCAGGACCGACAGTGGGATCGACAGTACGCAGAGGGGGATCGGGCTGA-CCC
259 GAGGGTTGTGGTAGCAGGACCG-CAGCGGGATCGACAGCATGCAGAGGGGGATCGGGCTAATCCC
* * * * ** * *
24096809 C-AGCTTACACATTATGCCTCTC---CA-A----CC--G--G-TTGAACGCCTGCACGTTCGTTT
323 CGA-CTTGCACATTATGCCTATCAAGCAGACCTCCCTAGCCGACTGAGCGCCCACACGCTCATTT
* * * *
24096860 CGT-AGGTTGACTTAAGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
387 CATGA-GTTGACTTAGGCATACGGAGTTCATCCCCAGTC-AAGAATACGGAGTTCATTCCCAGTC
*** ** * * * *** *
24096924 TAAGATTGGATTGGA-CTGAGGGTTGCGACAGCATGATCGGCAGCACGCTGGGGG-GACCG-GGC
450 TAAGATCAAATCAGATC-GAGGGTTACGACAGCAAGATCGGTAGCACAAAGGGGGCGACCGAGTC
* * * * * * * * * *
24096986 TGATCCCTGGCTTGCGCAATCTGCCTCTCCGA-CTGGCTAAG-AGCCTGCACGCCCGTTTCATGG
514 -GATCCCAGACTTACGCATTCTGCCTCTCCGATC-GACTAAGCA-CCCGCACACTCGTTTCGTCG
* ** * *
24097049 GTTGGCTGAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGG
576 GTTGGCTTAGGCATACAGAG-TACATTCCACGTCTAAGCCCCAGCT-GGACCGAGGGTTGTGG
24097110 TAGTGGGATC
Statistics
Matches: 1113, Mismatches: 206, Indels: 87
0.79 0.15 0.06
Matches are distributed among these distances:
708 9 0.01
709 211 0.19
710 2 0.00
712 1 0.00
714 2 0.00
718 2 0.00
721 2 0.00
722 19 0.02
723 265 0.24
724 8 0.01
726 3 0.00
727 2 0.00
728 1 0.00
729 1 0.00
732 5 0.00
733 2 0.00
734 10 0.01
735 238 0.21
736 259 0.23
737 71 0.06
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (726 bp):
TGAGCGCCCGCACGCTCGTTTCTTGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCAC
ACAAGGGGGATCGGGTCGATCCCGACTTGCGTATTCTGCCTCTTCGGCTGGCTGAGCGCCCGCAC
GCTTCTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCAGACCGA
GGGTTGTGGTAGCAGGACCGCAGCGGGATCGACAGCATGCAGAGGGGGATCGGGCTAATCCCCGA
CTTGCACATTATGCCTATCAAGCAGACCTCCCTAGCCGACTGAGCGCCCACACGCTCATTTCATG
AGTTGACTTAGGCATACGGAGTTCATCCCCAGTCAAGAATACGGAGTTCATTCCCAGTCTAAGAT
CAAATCAGATCGAGGGTTACGACAGCAAGATCGGTAGCACAAAGGGGGCGACCGAGTCGATCCCA
GACTTACGCATTCTGCCTCTCCGATCGACTAAGCACCCGCACACTCGTTTCGTCGGTTGGCTTAG
GCATACAGAGTACATTCCACGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCAGGACCGATA
GCGAGATCGACAGCATGATAGAGGGATCAAGCTGATCCCCGGCTTACGCAATAGGCCTATCGACC
GGCCTCAGGCT
Found at i:24096912 original size:26 final size:26
Alignment explanation
Indices: 24096872--24096927 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
24096862 TAGGTTGACT
24096872 TAAGCATACGAAGTTCATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
* *
24096898 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
24096924 TAAG
1 TAAG
24096928 ATTGGATTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGTC
Found at i:24097211 original size:159 final size:159
Alignment explanation
Indices: 24096974--24097403 Score: 445
Period size: 158 Copynumber: 2.7 Consensus size: 159
24096964 CAGCACGCTG
* * * * * * *
24096974 GGGGGACCGGGCTGATCCCTGGCTTGCGCAATCTGCCTCTCCGACTGGCTAAGAGCCTGCACGCC
1 GGGGGACTGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGTGCCCGCACGCT
* * * **
24097039 CGTTTCATGGGTTGGCTGAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGTCGGA-CTGAGG
66 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGATC-GAGG
* ** **
24097103 GTTGTGGTAGTGGGATCGGTAGCA-CACAGA
130 GTTGTGGCAGCAGGATCGACAGCAGCA-AGA
* * * * * *
24097133 GGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGTGCCCGCATGCT
1 GGGGGACTGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGTGCCCGCACGCT
* * * * ** *
24097198 CGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCA-ATCTAAGATCGAACCGGATCGAGGG
66 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGG
24097262 TTGTGGCAGCAGGATCGACAGCATGCAAGA
131 TTGTGGCAGCAGGATCGACAGCA-GCAAGA
* * * * ** * *
24097292 -GGGGATTGGGTTAATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGATTGAGTGCTCGCACGCT
1 GGGGGACTGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGTGCCCGCACGCT
* *
24097356 CATTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
24097404 ATACGGAGCT
Statistics
Matches: 217, Mismatches: 50, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
158 120 0.55
159 95 0.44
160 2 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (159 bp):
GGGGGACTGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGTGCCCGCACGCT
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGG
TTGTGGCAGCAGGATCGACAGCAGCAAGA
Found at i:24098510 original size:26 final size:26
Alignment explanation
Indices: 24098480--24098532 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24098470 GTTGACTTAG
24098480 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24098506 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24098532 G
1 G
24098533 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24099153 original size:368 final size:367
Alignment explanation
Indices: 24098094--24100477 Score: 2028
Period size: 368 Copynumber: 6.6 Consensus size: 367
24098084 CACACATTTA
* * * * ** *
24098094 TTTCGTGGGTTGACTTAGGCATATGGTGTTCGTCCCCAGTCTAAGCATACAAATTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * *
24098159 TCTAAGATC-GAACTGGATCGAGGGTTGCGGTAGCAGTATCGATAGCACATAGGGGGACCA-AGC
66 TCTAAGATCAG-ACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGACCAGAGC
* * * * * ** * * *
24098222 CGATCCCCGGCTT-CAGCATTCTGCCTCACCGGTTGGCTGAGCACTCGTACACTCATTTTCGTGG
130 CGATCCCCGACTTGC-GCATTCTGCCTCTCCGATCGACTGAGTGCCCGCACGCTCA-TTTCGTGG
* * *
24098286 GTTGGCTTAGGCATATGGAGTACATTCCAAGTCTAAGCCCCAGCT-GAACCGAGGGTTGTGGTAG
193 GTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCTAG-ACCGAGGGTTGTGGCAG
* * * * * * *
24098350 TAGGACCTGCAGCGGGATCGACAACACGCAGAGGGGGACCAGGCTGATCTCC-GGCTTGCACATT
257 CAGGA-CTGCAGCGAGATCGGCAGCACGCAGAGGGGGATCGGGCTGATC-CCTGGCTTGCGCATT
* **
24098414 ATGCCTCTCTGGCCGACCTCTCCGACCGGCTGAGCGCCCGCACGCTCG
320 ATGCCTCTCTGTCCGACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCG
*
24098462 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * *
24098527 TCTAAGATTAGACCAGATCGAGGGTTGCGGCAGTAGGATCAACAGCATGTAGGGGGATCAGA-CC
66 TCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGACCAGAGCC
* * * *
24098591 GATCCCC-AGCTTGTGCATTCTGCCTCTCCGATGGACTGAGTGCCCGCACGCTCATTTCATCGGT
131 GATCCCCGA-CTTGCGCATTCTGCCTCTCCGATCGACTGAGTGCCCGCACGCTCATTTCGTGGGT
* * * * * * *
24098655 TGGCTTGGGCATACGGAGTACATTCCACGTCTAAGCCCAAGCTGGATCGAGGGTTGTAGTAGTAG
195 TGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCTAGACCGAGGGTTGTGGCAGCAG
* * * * * * * *
24098720 GACCGGCAGCGGGATCGACAGCATGCAGAAGGGGACCGGGCTTAT-CCTCGGCTTACGCATTATG
260 GA-CTGCAGCGAGATCGGCAGCACGCAGAGGGGGATCGGGCTGATCCCT-GGCTTGCGCATTATG
* * ** * * *** *
24098784 CCTTTTTGATTAG-CCTCTCCGGTCGACTGAGCACTTACACACTCG
323 CCTCTCTG-TCCGACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCG
* * * *
24098829 TTCCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCTGACCTAAGCATACGGAGCTCATTCCCA
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAG-TCTAAGCATACGGAGTTCATTCCCA
* * * **
24098893 GTGTAAGATCAGACCGGATCGAGGGTTACGGTAGCAGGATCGGTAGCACGTAGGAGGGA-CAGAG
65 GTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGG-GGGACCAGAG
* * * * * *
24098957 CTGATCCCCGACTTACGCATTCTGCCTCTCCGACCGATTGAGTGCCCGTACGTTCATTTCGTGGG
129 CCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGTGCCCGCACGCTCATTTCGTGGG
* * * * ** *
24099022 TTAGCTTAGGCATACAGAGTACATTCCACATCTAA-CCCCTAGCTAGACTGAGGGTCATGGCAAC
194 TTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCC-AGCTAGACCGAGGGTTGTGGCAGC
* * * *
24099086 AGGACTGACAGCGGGATCGGTAGCACGCAGAGGGGGA-CAGGGCTGATCCCTGGCATGCGTATTA
258 AGGACTG-CAGCGAGATCGGCAGCACGCAGAGGGGGATC-GGGCTGATCCCTGGCTTGCGCATTA
* * * **
24099150 TGCCTCT-TCGGCCGACCTCTCCGGCCGGCTGAGTGCCCGCACAATCG
321 TGCCTCTCT-GTCCGACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCG
* *
24099197 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * *
24099262 TCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGACAGCACGAAGGGGGGACC-GGGC
66 TCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGTA-GGGGGACCAGAGC
* * * * * * *
24099326 CGATCCCC-AGCTTGCGCATTCTACCT-T---TTCGGC-CA--GCTCGCACGCCCGTTTCGTGGG
130 CGATCCCCGA-CTTGCGCATTCTGCCTCTCCGATCGACTGAGTGCCCGCACGCTCATTTCGTGGG
* * * * * *
24099383 TTGGCTTAGGCCTAGGGA-TCTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGT------
194 TTGGCTTAGGCATACGGAGT-ACATTCCACGTCTAAGCCCCAGCTAGACCGAGGGTTGTGGCAGC
* * * * * * *
24099441 -----TGTAGTGAGACCGGTAGCACGTAGAGGGGGATCGGGCCGATCTCC-GGCTTGCGCATTCT
258 AGGACTGCAGCGAGATCGGCAGCACGCAGAGGGGGATCGGGCTGATC-CCTGGCTTGCGCATTAT
*
24099500 G-C-CT-T-TCCGA----T-C--T--GCTGAGCGCCTGCACGCTCG
322 GCCTCTCTGTCCGACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCG
** * * * *
24099533 TTTTGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATATGGAGCTCATTCCCA
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCA
* * * * ** *
24099597 ATCTAAGATTAGACTGGATCGAGGGTTGCGGTAGCAGGATC-AGCAGCACACAGAGGGGATC-GA
65 GTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGTAG-GGGGACCAGA
*** * * * * * ** *
24099660 ATTGATCCCTGACTTGCACATTTTGCCTCTCTGATCGGCTGAGCACCCGCACGTTCATTTCGTGG
128 GCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGTGCCCGCACGCTCATTTCGTGG
* * **
24099725 GTTGGCTTAGGCATATGGAGTACATTCCACGTCTAAGCCCCAGCCAGACCGAGCATTGTGGCAGC
193 GTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCTAGACCGAGGGTTGTGGCAGC
* * * * * **
24099790 AGGACCGACAAG-AAGATCGGCAGCACGCAGAGGAGGA-CCGGCTGATCCCTGGCTTACATATTA
258 AGGACTG-C-AGCGAGATCGGCAGCACGCAGAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTA
** * * * * *
24099853 TGCCTCTCAAAT-CGGCTTCTCCGATCGGCTGAGTGCCTGCACGCTCG
321 TGCCTCTC-TGTCCGACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCG
* *
24099900 TTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCAAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * *
24099965 TCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATCGACAGCATGCAGGGGGGACC-GAAC
66 TCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGTA-GGGGGACCAGAGC
* * * * * * * ** *
24100029 CGATCCCCGGCTTGCGCATTCTGCCTCTCTGAGCG-GTAAATCGCCCACAAACTCGTTTCGTGGG
130 CGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGT-GCCCGCACGCTCATTTCGTGGG
* ** * * *
24100093 TTGGCTTAGGCATCCGGAGTACACACCACGTCTAAGCCCCAGCTGGACCGAGGTTTGTGCCAGCA
194 TTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCTAGACCGAGGGTTGTGGCAGCA
* * * * * * *
24100158 CGACTGGCAACGAGATCGGCAGCATGCATAGAGGGATCGAGCTGATCCCCGGCTTGCGCATTATG
259 GGACT-GCAGCGAGATCGGCAGCACGCAGAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTATG
* * * * * *
24100223 CCTCTCCGAT-CGACCTTTTCGGTCGGTTGAGCGCTCGCATGCTCG
323 CCTCTCTG-TCCGACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCG
**
24100268 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCTTAGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * * *
24100333 TGTAAGATCGGATCGGATCGAGGGTTACTGCAGTAGGATCGACAGCACGTAGGGGGACCAG-GTC
66 TCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGACCAGAGCC
* * * * * * * * *
24100397 GATCCCCGAGTTACACATTCTGCCTTTCCGATCGACTGAGCT-CCCGCACGCCCGTTCCATAGGT
131 GATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAG-TGCCCGCACGCTCATTTCGTGGGT
24100461 TGGCTTAGGCATA-GGAG
195 TGGCTTAGGCATACGGAG
24100478 GCTTATTCCA
Statistics
Matches: 1613, Mismatches: 326, Indels: 156
0.77 0.16 0.07
Matches are distributed among these distances:
335 5 0.00
336 137 0.08
337 2 0.00
340 6 0.00
341 2 0.00
343 66 0.04
344 1 0.00
345 4 0.00
347 3 0.00
348 1 0.00
349 44 0.03
350 5 0.00
353 2 0.00
354 20 0.01
355 21 0.01
356 4 0.00
358 2 0.00
359 1 0.00
360 1 0.00
361 56 0.03
362 5 0.00
363 2 0.00
364 2 0.00
365 3 0.00
366 11 0.01
367 571 0.35
368 622 0.39
369 14 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (367 bp):
TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGACCAGAGCC
GATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGTGCCCGCACGCTCATTTCGTGGGTT
GGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCTAGACCGAGGGTTGTGGCAGCAGG
ACTGCAGCGAGATCGGCAGCACGCAGAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTATGCCT
CTCTGTCCGACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCG
Found at i:24099251 original size:26 final size:26
Alignment explanation
Indices: 24099215--24099267 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24099205 GTTGACTTAG
*
24099215 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24099241 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24099267 G
1 G
24099268 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24099954 original size:26 final size:26
Alignment explanation
Indices: 24099918--24099970 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24099908 GTTGACTTAG
*
24099918 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
*
24099944 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
24099970 G
1 G
24099971 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:24101524 original size:26 final size:26
Alignment explanation
Indices: 24101484--24101536 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24101474 GTTGACTTGG
* *
24101484 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
*
24101510 GCATACGAAGGTCATTCCCAGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
24101536 G
1 G
24101537 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGAAGGTCATCCCCAGTCTAA
Found at i:24102027 original size:26 final size:26
Alignment explanation
Indices: 24101991--24102040 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
24101981 GACTTAGGCG
24101991 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAGTCTAAGCA
* *
24102017 TACGGAGTTCATTCTCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
24102041 ATTAGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCA
Found at i:24103527 original size:26 final size:26
Alignment explanation
Indices: 24103498--24103550 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
24103488 GTTGACTTGG
24103498 GCATAC-AGAGTTCA-TCTCCAGTCTAA
1 GCATACGA-AGTTCATTC-CCAGTCTAA
24103524 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
24103550 G
1 G
24103551 ATCACACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:24104241 original size:26 final size:26
Alignment explanation
Indices: 24104203--24104279 Score: 118
Period size: 26 Copynumber: 3.0 Consensus size: 26
24104193 GGTTGACTTA
24104203 AGCATACGGAGTTCATCCCCAGTCTT
1 AGCATACGGAGTTCATCCCCAGTCTT
* *
24104229 AGCATATGAAGTTCATCCCCAGTCTT
1 AGCATACGGAGTTCATCCCCAGTCTT
* *
24104255 AGCATACGGAGTTTATTCCCAGTCT
1 AGCATACGGAGTTCATCCCCAGTCT
24104280 AAGATTGAAC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (26 bp):
AGCATACGGAGTTCATCCCCAGTCTT
Found at i:24104557 original size:159 final size:159
Alignment explanation
Indices: 24104388--24104760 Score: 387
Period size: 159 Copynumber: 2.3 Consensus size: 159
24104378 TGAGCACCCG
* * * * *
24104388 CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCT-ACCCGGA
1 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTGA-CCAGA
* * * * *
24104452 CCGAGGGTTGTGGTAGCAGGA-CAGACAGCTTGC-AGAGGGGGACTGGGCCAATCCCTGGCTTGC
65 CCGAGGGTTATGGCAGCAGGATCA-ACAGCATGCAAG-GGGGGACCGGGCCAATCCCCGGCTTGC
* *
24104515 ACGGTATGCCTCTTCGGTCGGCTCAACGCCCA
128 ACAGTATGCCTCTTCGGCCGGCTCAACGCCCA
* ** *
24104547 CACGCTCGTTTCATGGGTTGACTTACACATACGGAGTTCATTCCCA-GTCTAAG-ATTGGACCAG
1 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACT-GACCAG
* * * *** *
24104610 ACTGAGGGTTATGGCATCAGGATCAACAGCATGGAAGGGGGGACCGGGTTGATCCCCGGCTTGCG
64 ACCGAGGGTTATGGCAGCAGGATCAACAGCATGCAAGGGGGGACCGGGCCAATCCCCGGCTTGCA
* * * * * * **
24104675 TATTCTGCCTTTTCGGCCTGCTGAACGCCTG
129 CAGTATGCCTCTTCGGCCGGCTCAACGCCCA
24104706 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
24104761 TATGGAGCTC
Statistics
Matches: 173, Mismatches: 34, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
158 4 0.02
159 160 0.92
160 9 0.05
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTGACCAGAC
CGAGGGTTATGGCAGCAGGATCAACAGCATGCAAGGGGGGACCGGGCCAATCCCCGGCTTGCACA
GTATGCCTCTTCGGCCGGCTCAACGCCCA
Found at i:24104762 original size:26 final size:26
Alignment explanation
Indices: 24104732--24104784 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24104722 GTTGGCTTAG
*
24104732 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
*
24104758 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
24104784 G
1 G
24104785 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:24105472 original size:26 final size:26
Alignment explanation
Indices: 24105442--24105492 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
24105432 TTGACTTAGG
24105442 CATACGGAGTTCATCCTCAGTCTAAC
1 CATACGGAGTTCATCCTCAGTCTAAC
* *
24105468 CATACGGAGTTCATTCTTAGTCTAA
1 CATACGGAGTTCATCCTCAGTCTAA
24105493 GATCAGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATCCTCAGTCTAAC
Found at i:24105839 original size:26 final size:26
Alignment explanation
Indices: 24105809--24105861 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24105799 GTTGACTTAG
24105809 GCATACGAAGTTCA-TCGCCAGTCTAA
1 GCATACGAAGTTCATTC-CCAGTCTAA
*
24105835 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
24105861 G
1 G
24105862 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:24106197 original size:159 final size:158
Alignment explanation
Indices: 24105835--24106336 Score: 371
Period size: 159 Copynumber: 3.2 Consensus size: 158
24105825 GCCAGTCTAA
* * * * *
24105835 GCATACGGAGTTCATTCCCA-GTCTAAGATCGA-ATCAGACCAAGGGTTG-CGACAGCAAGATCG
1 GCATACGGAGTTCATTCCCATGTCTAA-ACCTAGA-CAGACCGAGGGTTGCCG-CAGCAGGATAG
* * * * * * * * * * *
24105897 ACAGCAC-GTAG-GGGGGACCGAGCCGATGCCCGACTTACGCATTCTACCTTTTCAGCTGGCT-A
63 ACA-CACAG-AGAGGGGGATCGGGCCGATCCCCGGCTTGCACATTATACCTCTTCGGCCGACTCA
* *
24105959 AGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
126 A-TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * ** * *
24105993 GCATAGGGAGCTCATT-CCATGTCTAAACCCTAGCCGGACCGAGGGTTGTGGTAGCGGGATAGAC
1 GCATACGGAGTTCATTCCCATGTCTAAA-CCTAGACAGACCGAGGGTTGCCGCAGCAGGATAGAC
* **
24106057 A-ACATGCAGAGGGGGA-CTGGGCCGATCCCCGGCTTGCACGTTATGGCTCTTCGGCCGACTCAA
65 ACACA-G-AGAGGGGGATC-GGGCCGATCCCCGGCTTGCACATTATACCTCTTCGGCCGACTCAA
* *
24106120 TGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
127 TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** *
24106152 GCATACGGAGTTCATTCCCA-GTCTAAGA-TTGGAACAGATCGAGGGTTGCCGCATTAGGATCGA
1 GCATACGGAGTTCATTCCCATGTCTAA-ACCTAG-ACAGACCGAGGGTTGCCGCAGCAGGATAGA
* ** * * * * *
24106215 CAGCACAGAGGGGGGGATCGGGTTGATCCCCGGCTTGCGCATTCTACCTCTTCGGCCGGCTGAGT
64 CA-CACAGAGAGGGGGATCGGGCCGATCCCCGGCTTGCACATTATACCTCTTCGGCCGACTCAAT
* *
24106280 GCCCGCACACTCGTTTCGTGGGCTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
24106311 GCATACGGAGTTCATT-CCATCTCTAA
1 GCATACGGAGTTCATTCCCATGTCTAA
24106337 GCATATGGAG
Statistics
Matches: 268, Mismatches: 60, Indels: 31
0.75 0.17 0.09
Matches are distributed among these distances:
156 2 0.01
157 4 0.01
158 53 0.20
159 198 0.74
160 8 0.03
161 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCATGTCTAAACCTAGACAGACCGAGGGTTGCCGCAGCAGGATAGACA
CACAGAGAGGGGGATCGGGCCGATCCCCGGCTTGCACATTATACCTCTTCGGCCGACTCAATGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:24107064 original size:26 final size:26
Alignment explanation
Indices: 24107031--24107086 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
24107021 TGAGTTGACT
*
24107031 TAAGCATACAAAGTTCATCCCCAGTC
1 TAAGCATACAAAGTTCATCCACAGTC
** *
24107057 TAAGCATACGGAGTTCATTCACAGTC
1 TAAGCATACAAAGTTCATCCACAGTC
24107083 TAAG
1 TAAG
24107087 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (26 bp):
TAAGCATACAAAGTTCATCCACAGTC
Found at i:24107419 original size:26 final size:26
Alignment explanation
Indices: 24107389--24107441 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24107379 GTTGACTTAG
*
24107389 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24107415 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24107441 G
1 G
24107442 ATCGAAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24108021 original size:26 final size:26
Alignment explanation
Indices: 24107992--24108044 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24107982 GTTGACTTAG
*
24107992 GCATACAGATTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
24108018 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24108044 G
1 G
24108045 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24108348 original size:158 final size:157
Alignment explanation
Indices: 24108018--24108424 Score: 396
Period size: 158 Copynumber: 2.6 Consensus size: 157
24108008 CCCAGTCTAA
* * * * * * *
24108018 GCATACGGAGTTCATT-CTCAGTCTAAGATCGGACCGGACTA-AGGGTTGTAGCAGCAGGATCAG
1 GCATACGAAGCTCATTCCT-AGTCTAAGACCAGACCAGAC-AGAGGGTTGTGGCAGCAGGATCGG
* * * ** * *
24108081 TAGCACGCAGGGGGGATCGGG-CTGATCCTCGACTTACGCATTTGCCTCTCCGATTGACTGAGCG
64 CAGCACGCAGGGGGGACCGGGTC-GATCCTCGACTTACACATTTGCCTCTCCGACCGACTCAACG
* *
24108145 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCCCGTTTCATGGGTTGACTTAG
* * * * *
24108175 GCATAGGAAGCTCATTCC-ATGTCTAAGCCCTAG-CC-GAACCGAGGGTTGTGGCAGCGGGACCG
1 GCATACGAAGCTCATTCCTA-GTCTAAGACC-AGACCAG-ACAGAGGGTTGTGGCAGCAGGATCG
* * * *
24108237 GCAGCACGCAGAGGGGGA-CGGGTCGATCCTCGACTTGCACATTATGCCTTTTCGACCGGCTCAA
63 GCAGCACGCAG-GGGGGACCGGGTCGATCCTCGACTTACACATT-TGCCTCTCCGACCGACTCAA
* *
24108301 CGCCCGCACGCTCGTTTCATGGGTTGACTTAT
126 CGCCCGCACGCCCGTTTCATGGGTTGACTTAG
* * * * * *
24108333 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGACAGAAGGTTGCGGTAGCAGGATCGACA
1 GCATACGAAGCTCATTCCTAGTCTAAGACCAGACCAGACAGAGGGTTGTGGCAGCAGGATCGGCA
24108398 GCACGCAGGGGGGACCGGGTCGATCCT
66 GCACGCAGGGGGGACCGGGTCGATCCT
24108425 TGGCTTACGC
Statistics
Matches: 202, Mismatches: 36, Indels: 23
0.77 0.14 0.09
Matches are distributed among these distances:
156 2 0.01
157 81 0.40
158 117 0.58
159 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.21
Consensus pattern (157 bp):
GCATACGAAGCTCATTCCTAGTCTAAGACCAGACCAGACAGAGGGTTGTGGCAGCAGGATCGGCA
GCACGCAGGGGGGACCGGGTCGATCCTCGACTTACACATTTGCCTCTCCGACCGACTCAACGCCC
GCACGCCCGTTTCATGGGTTGACTTAG
Found at i:24108455 original size:158 final size:157
Alignment explanation
Indices: 24108082--24108516 Score: 373
Period size: 158 Copynumber: 2.8 Consensus size: 157
24108072 CAGGATCAGT
* ** * ** * * *
24108082 AGCACGCAG-GGGGGATCGGG-CTGATCCTCGACTTACGCATT-TGCCTCTCCGATTGACTGAGC
1 AGCACGCAGAGGGGGA-CGGGTC-GATCCTCGACTTACACATTATGCAACTTCGACCGGCTCAAC
* * * *
24108144 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGAAGCTCATTCCATGTCTAAGCCCTAGC
64 GCCCGCACGCTCGTTTCGTGGGTT-GCTTAGGCATACGAAGTTCATTCCATGTCTAAGACCTAGC
* * * * *
24108209 CGAACCGAGGGTTGTGGCAGCGGGACCGGC
128 CGAACAGAAGGTTGCGGCAGCAGGACCGAC
* ***
24108239 AGCACGCAGAGGGGGACGGGTCGATCCTCGACTTGCACATTATGCCTTTTCGACCGGCTCAACGC
1 AGCACGCAGAGGGGGACGGGTCGATCCTCGACTTACACATTATGCAACTTCGACCGGCTCAACGC
* * *
24108304 CCGCACGCTCGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCC-TAGTCTAAGATC-AGAC
66 CCGCACGCTCGTTTCGTGGGTTG-CTTAGGCATACGAAGTTCATTCCAT-GTCTAAGACCTAG-C
* *
24108367 C-AGACAGAAGGTTGCGGTAGCAGGATCGAC
128 CGA-ACAGAAGGTTGCGGCAGCAGGACCGAC
* * * * * ** * **
24108397 AGCACGCAG-GGGGGACCGGGTCGATCCTTGGCTTACGCATTCTGGAACTTCGGTCGGCTGAGTG
1 AGCACGCAGAGGGGGA-CGGGTCGATCCTCGACTTACACATTATGCAACTTCGACCGGCTCAACG
* * *
24108461 -CCGCATGCTCGTTTCGTGGGTTCGCTTAGGCATACGGAGTTCATTCCATGTATAAG
65 CCCGCACGCTCGTTTCGTGGGTT-GCTTAGGCATACGAAGTTCATTCCATGTCTAAG
24108517 CATACGAAGC
Statistics
Matches: 226, Mismatches: 42, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
157 88 0.39
158 138 0.61
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
AGCACGCAGAGGGGGACGGGTCGATCCTCGACTTACACATTATGCAACTTCGACCGGCTCAACGC
CCGCACGCTCGTTTCGTGGGTTGCTTAGGCATACGAAGTTCATTCCATGTCTAAGACCTAGCCGA
ACAGAAGGTTGCGGCAGCAGGACCGAC
Found at i:24109194 original size:26 final size:26
Alignment explanation
Indices: 24109151--24109200 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
24109141 GACTTAGGCA
*
24109151 TACGGAGTTCATCCCCAGTTTAAGCT
1 TACGGAGTTCATCCCCAGTCTAAGCT
**
24109177 TACGGAGTTCATTTCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
24109201 ATCGGACCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCT
Found at i:24109685 original size:26 final size:26
Alignment explanation
Indices: 24109649--24109701 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24109639 GTTGACTTAG
*
24109649 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
24109675 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
24109701 G
1 G
24109702 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:24110032 original size:26 final size:26
Alignment explanation
Indices: 24110003--24110055 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24109993 GTTGACTTAG
* *
24110003 GCATATGGAGTTCATCCTTAGTCTAA
1 GCATACGGAGTTCATCCTCAGTCTAA
*
24110029 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCTCAGTCTAA
24110055 G
1 G
24110056 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAGTCTAA
Found at i:24110401 original size:26 final size:26
Alignment explanation
Indices: 24110371--24110423 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24110361 GTTGACTTAG
24110371 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24110397 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24110423 G
1 G
24110424 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24110513 original size:368 final size:365
Alignment explanation
Indices: 24109613--24110985 Score: 1446
Period size: 369 Copynumber: 3.8 Consensus size: 365
24109603 TCCGATCGGT
* * * *
24109613 TGAGTGCCTGCACGTTTGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAATCTAAGCA
1 TGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCA
* ** ** * * * *
24109678 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGGGGGTTGCGGTAGCAGGACCGATAGCA
66 TACGGAGTTCATTCCCAGTCTAAGATCGAACTGGATCAAGGGTTACGGCAGCAGGATCGACAGCA
* * * * * *
24109743 CGCA-GGGAGACCA-AGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCTGGCTGAGCGCCTG
131 CGCAGGGGGGA-CAGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGATGAGCGCCCG
** * * *
24109806 CACGCTCGTTTTTTAGGTTGGCTGAGGCATACAGAGTACATTCCATGTCTAAGCCCCAGTCGGAC
195 CACGCTCGTTTCATGGGTTGGCTTAGGCATATAGAGTACATTCCATGTCTAAGCCCCAGTCGGAC
* * * * *
24109871 CGAGGGTTATGGCAGCAGGACCGACAGCGGGATCGACAGCACACAGAAGGGGACCAGGCTGATCC
260 CGAGGGTTGTGGCAGCAGGATCGACAGCGGGATCGATAGCACGCAGAGGGGGACCAGGCTGATCC
* *
24109936 TC-GACTTGTTCATTATGCCTCTCCG---A-----CC-G-GT
325 TCAG-CTTGTGCATTATGCCTCTCCGATCAGCTCTCCGGCGC
* * * * ** *
24109967 TGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCTTAGTCTAAGCA
1 TGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCA
* * *
24110032 TACGGAGTTCATTCTCAGTCTAAGATCGAA-TCGGATCGAGGGTTACGGCAGCAGGATCGATAGC
66 TACGGAGTTCATTCCCAGTCTAAGATCGAACT-GGATCAAGGGTTACGGCAGCAGGATCGACAGC
* * * * * * * **
24110096 AGGCAGGGAGGACCGAGCCAATCCCCGACTTGCGCATTATGCCTCTCCGATTAGATGAGTTCCCG
130 ACGCAGGGGGGACAGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGATGAGCGCCCG
*
24110161 CACGCTCGTTTCATGGGTTGGCTTAGGCATATAGAGTACATTCCAT-TACTAAGCCCCAGTCAGA
195 CACGCTCGTTTCATGGGTTGGCTTAGGCATATAGAGTACATTCCATGT-CTAAGCCCCAGTCGGA
* * * * *
24110225 CCAAAGGTTGTGGCAGTAGGATCGACAGCGGCATCGGTAGCACGCAGAGGGGGACCAGGCTGATC
259 CCGAGGGTTGTGGCAGCAGGATCGACAGCGGGATCGATAGCACGCAGAGGGGGACCAGGCTGATC
24110290 CTCAGCTTGTGCATTATGCCTCTCCGATCAGCCTCTCCGGCCGAC
324 CTCAGCTTGTGCATTATGCCTCTCCGATCAG-CTCTCCGG-CG-C
* * *
24110335 TGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCA
* * * *
24110400 TACGGAGTTCATTCCCAGTCTAAGATCAAACTGGATCAAGGGTTACGGTAGCAGGATTGGCAGCA
66 TACGGAGTTCATTCCCAGTCTAAGATCGAACTGGATCAAGGGTTACGGCAGCAGGATCGACAGCA
* * * * * *
24110465 TGCAGGGGGGACTAG-GCTGATCCCCGGCTTGTGCATTCTGCGTCTCCGACCTGCA-GAGCGCCC
131 CGCAGGGGGGAC-AGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGA-CTGGATGAGCGCCC
* * *
24110528 ACACGCTTGTTTTATGGGTTGGCTTAGGGCATATAGAGTACATTCCATGTCTAAGCCCCAGTCGG
194 GCACGCTCGTTTCATGGGTTGGCTTA-GGCATATAGAGTACATTCCATGTCTAAGCCCCAGTCGG
* * * * * * *
24110593 ACCGAGGGTTTTGGTAGCAGCA-CTGATAGCGGGATCGATAGCATGCAGAGGGAGATC-GAGCTG
258 ACCGAGGGTTGTGGCAGCAGGATC-GACAGCGGGATCGATAGCACGCAGAGGGGGACCAG-GCTG
* * *
24110656 ATCCCCAGTTTGTGCATTATGCCTCTCCGATCAGCTTCTCCGACTGGC
321 ATCCTCAGCTTGTGCATTATGCCTCTCCGATCAGC-TCTCCGGC--GC
* *
24110704 TGAGC-ACT-CACATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAG
1 TGAGCGCCTGCAC--GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAG
* * * * *
24110767 CATACGGAGTTCATTCCTAGTCTAAGATCGAATTGGAAT-AAGGGTTGCGACAGCAGGATCGGCA
64 CATACGGAGTTCATTCCCAGTCTAAGATCGAACTGG-ATCAAGGGTTACGGCAGCAGGATCGACA
* * * * * * ** *
24110831 GCACGTAGGAGGGACCGAGCCGATCCTC-AGCTTGCACATTCTACCTCTCCGGTTGGCTGAGCGC
128 GCACGCAGGGGGGACAGAGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGACTGGATGAGCGC
* * ** *
24110895 CCGTACG-TCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTATGCCCCAGT
192 CCGCACGCT-CGTTTCATGGGTTGGCTTAGGCATATAGAG-TACATTCCATGTCTAAGCCCCAGT
*
24110958 CGGATCGAGGGTTGTGGCAGCAGGATCG
255 CGGACCGAGGGTTGTGGCAGCAGGATCG
24110986 GTAGCACGTA
Statistics
Matches: 845, Mismatches: 137, Indels: 60
0.81 0.13 0.06
Matches are distributed among these distances:
354 117 0.14
355 177 0.21
356 1 0.00
358 1 0.00
364 2 0.00
365 1 0.00
367 4 0.00
368 242 0.29
369 296 0.35
370 4 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (365 bp):
TGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCGAACTGGATCAAGGGTTACGGCAGCAGGATCGACAGCA
CGCAGGGGGGACAGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGATGAGCGCCCGC
ACGCTCGTTTCATGGGTTGGCTTAGGCATATAGAGTACATTCCATGTCTAAGCCCCAGTCGGACC
GAGGGTTGTGGCAGCAGGATCGACAGCGGGATCGATAGCACGCAGAGGGGGACCAGGCTGATCCT
CAGCTTGTGCATTATGCCTCTCCGATCAGCTCTCCGGCGC
Found at i:24111099 original size:159 final size:159
Alignment explanation
Indices: 24110904--24111268 Score: 400
Period size: 159 Copynumber: 2.3 Consensus size: 159
24110894 CCCGTACGTC
* * * * * *
24110904 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTATGCCCCAG-TCGGATCGAGG
1 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAGATCGGATCGAGG
* ** * * **
24110968 GTTGTGGCAGCAGGATCGGTAGCA-CGTAGAGGG-GGA-TCGGGTTGATCCCC-GACTTGTCCAT
65 GTTGTAGCAGCAGGATCGACAGCATC-CAG-GGGAGGACT-GGGTCGATCCCCAG-CTTGAACAT
* * *
24111029 TATGCCTCTTCGGCCGGTTCATCACCCGCACGCT
126 TATGCCTCTCCGACCGGTTCAGCACCCGCACGCT
* * * * *
24111063 CGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCCCTGTCTAAGATCAGATCGGATTGAGGG
1 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGATCGGATCGAGGG
*
24111128 TTGTAGCAGCAGGATCGACAGCATCCAGGGGAGGACTGGGTCGATCCCCAGCTTGAACATTCTGC
66 TTGTAGCAGCAGGATCGACAGCATCCAGGGGAGGACTGGGTCGATCCCCAGCTTGAACATTATGC
* * *
24111193 CTCTCCGATCGGTTGAGCGCCCGCACGCT
131 CTCTCCGACCGGTTCAGCACCCGCACGCT
*
24111222 TGTTTCATGGGTT-AGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CGTTTCATGGGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAAG
24111269 CATATGGAGC
Statistics
Matches: 171, Mismatches: 29, Indels: 12
0.81 0.14 0.06
Matches are distributed among these distances:
158 7 0.04
159 161 0.94
160 3 0.02
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.27
Consensus pattern (159 bp):
CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGATCGGATCGAGGG
TTGTAGCAGCAGGATCGACAGCATCCAGGGGAGGACTGGGTCGATCCCCAGCTTGAACATTATGC
CTCTCCGACCGGTTCAGCACCCGCACGCT
Found at i:24111272 original size:26 final size:26
Alignment explanation
Indices: 24111242--24111294 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24111232 GTTAGCTTAG
*
24111242 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
*
24111268 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
24111294 G
1 G
24111295 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:24111998 original size:26 final size:26
Alignment explanation
Indices: 24111962--24112012 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
24111952 TTGACTTAGG
*
24111962 CATATGGAGTTCATCCCCAGTCTAAA
1 CATACGGAGTTCATCCCCAGTCTAAA
*
24111988 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
24112013 GATCGGACAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAA
Found at i:24112289 original size:159 final size:161
Alignment explanation
Indices: 24112037--24112490 Score: 399
Period size: 158 Copynumber: 2.9 Consensus size: 161
24112027 AAGGGTTGTG
* * * * * * * * * *
24112037 GCAGCAGGATTGACAGCACG-CAGGGGGGACCGGGCCGATCCTCAGCTTGCACATTCTACCTCTC
1 GCAGCAGGATCGATAGCACGTGAGGGGTGACCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTT
* * * * * *
24112101 CGACCAACAG-AGTGCCCGCACGC-CTGTTTCGTGGGTTGGCTTAGGTATAGGGAGCTCATTCCA
66 CGATCGACTGCAGTGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* * ** * **
24112164 TGTCTAAGCCCCAG-TCAGACTGAGGGTTATG
130 TGTCTAAGCACCAGACCAGACCAACGGTTACA
* * **
24112195 GTAGCAGGATCGGTAGCACGTAGAGGGG-GACCGAGCCGATCC-CTGGCTTTTGCATTATGCCTC
1 GCAGCAGGATCGATAGCACGT-GAGGGGTGACCGAGCCGATCCTC-GGCTTGCGCATTATGCCTC
* * * *
24112258 TTCGATCGACT-CAGTGCCCGCACGCTCGTTTCGTGAGTT-ACTTATGCATATGGAGTTCATTCC
64 TTCGATCGACTGCAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-C
* *
24112321 CA-GTCTAAG-ATCAGACCAGACCAACGGTTGCA
128 CATGTCTAAGCACCAGACCAGACCAACGGTTACA
** * * * * * *
24112353 GCAGCAGGATCGATAGTGCGTGGGGGGTGATCGGGTCGATCCTCGGCTTGCGCATTTTGCCTTTT
1 GCAGCAGGATCGATAGCACGTGAGGGGTGACCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTT
** *
24112418 CGATCGACTGC-GCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
66 CGATCGACTGCAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
24112482 GTCTAAGCA
131 GTCTAAGCA
24112491 TATGGAGCTC
Statistics
Matches: 233, Mismatches: 50, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
157 8 0.03
158 130 0.56
159 88 0.38
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (161 bp):
GCAGCAGGATCGATAGCACGTGAGGGGTGACCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTT
CGATCGACTGCAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
GTCTAAGCACCAGACCAGACCAACGGTTACA
Found at i:24112491 original size:26 final size:26
Alignment explanation
Indices: 24112462--24112514 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24112452 GTTGGCTTAG
*
24112462 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
*
24112488 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
24112514 G
1 G
24112515 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:24115478 original size:159 final size:159
Alignment explanation
Indices: 24115173--24115469 Score: 389
Period size: 159 Copynumber: 1.9 Consensus size: 159
24115163 CCACCTGGAT
* * * * *
24115173 CGAGGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGAGGGACCGGGTCGATCTCCGGCTTGTGCA
1 CGAGGGTTGTGACAGCAAGACCGACAGCACGCAGAGAGGGACCGGGTCGATCCCCGACTTGTGCA
* * * * * * *
24115238 TTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGGTTGTTTCATGGGTTGACTTATGCATACAGAG
66 TTATGCCTCTCCGCTCAGCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAG
24115303 TTCATTCCCAATCTAAGATCGGATCAGAC
131 TTCATTCCCAATCTAAGATCGGATCAGAC
** * * *
24115332 CGAGGGTTGTGACAGCAAGATTGACAGCACGCAGGGGGGGATCGGGTCGATCCCCGACTTGTGCA
1 CGAGGGTTGTGACAGCAAGACCGACAGCACGCAGAGAGGGACCGGGTCGATCCCCGACTTGTGCA
* * * *
24115397 TTCTGCCTCTCCGACT-AGCTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
66 TTATGCCTCTCCG-CTCAGCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGA
24115461 GTTCATTCC
130 GTTCATTCC
24115470 ATGTCTAAGC
Statistics
Matches: 116, Mismatches: 21, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
159 115 0.99
160 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
CGAGGGTTGTGACAGCAAGACCGACAGCACGCAGAGAGGGACCGGGTCGATCCCCGACTTGTGCA
TTATGCCTCTCCGCTCAGCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAG
TTCATTCCCAATCTAAGATCGGATCAGAC
Found at i:24115862 original size:159 final size:157
Alignment explanation
Indices: 24115478--24115978 Score: 384
Period size: 158 Copynumber: 3.2 Consensus size: 157
24115468 CCATGTCTAA
* * * ** * *
24115478 GCATACAGAGCTCATTCCCAATCTAAGATC-GAACCAGACCGAGGGTTACGCCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGTGGCAGTAGGATCGAC
* * * * * *
24115542 AGCACGTAGGGGGGACCGAGACGATCCACGACTTGTGCATTCTGCCTTTTCGACCGATGAGCACC
65 AGCACGCAGGGGGGACCAAGACGATCCACGACTTGCGCATTATGCCTTTACGACCGATCAGCACC
*
24115607 CGCACACCCGTTTCATGGGTTGGCTTAG
130 CGCACACCCGTTTCATGGGTTGACTTAG
* * ** * * * * *
24115635 GCATAGGGA-TCTCATT-CCATGGCTAAGCCCCA-ACCGGATCGAGGTTTGTGGCAGTGGGACCG
1 GCATACGGAGT-TCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCG
** * * * * * * *
24115697 GTAGCACGCAGAGGGGGATCAAGCCGATCCCCGACTTGCGCATTATGCCTCTTAGGTCGGCTCAG
63 ACAGCACGCAG-GGGGGACCAAGACGATCCACGACTTGCGCATTATGCCT-TTACGACCGATCAG
* * * *
24115762 CTCCCGCACGCTCGTTTCATGGGTTGACTTAT
126 CACCCGCACACCCGTTTCATGGGTTGACTTAG
* *
24115794 GCATACGGAGTTCATTCCCAGTCTAAGGTCAGACCAGACCGAGGGTTGTGGCAGTAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGACA
* ** * * * * * * * *
24115859 GCACACAGGGGGGACCGGGTCAAGCC-CTGACTTGCACATTTTGCCTCTCCGACCGACTGAGCAC
66 GCACGCAGGGGGGACCAAGACGATCCAC-GACTTGCGCATTATGCCTTTACGACCGA-TCAGCAC
* * * * *
24115923 CTGCACACTCGTTTCGTGGGTTGGCTTCG
129 CCGCACACCCGTTTCATGGGTTGACTTAG
*
24115952 GCGTACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
24115979 CATAAGAAGC
Statistics
Matches: 260, Mismatches: 72, Indels: 23
0.73 0.20 0.06
Matches are distributed among these distances:
156 3 0.01
157 54 0.21
158 113 0.43
159 86 0.33
160 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGACA
GCACGCAGGGGGGACCAAGACGATCCACGACTTGCGCATTATGCCTTTACGACCGATCAGCACCC
GCACACCCGTTTCATGGGTTGACTTAG
Found at i:24116710 original size:26 final size:26
Alignment explanation
Indices: 24116674--24116752 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
24116664 GTTGACTTAG
* *
24116674 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
24116700 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24116726 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24116752 G
1 G
24116753 ATCGGACCAA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24117105 original size:26 final size:26
Alignment explanation
Indices: 24117068--24117120 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24117058 GTCGACTTAG
24117068 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
24117094 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24117120 G
1 G
24117121 ACCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24117377 original size:368 final size:354
Alignment explanation
Indices: 24116700--24117670 Score: 1009
Period size: 368 Copynumber: 2.7 Consensus size: 354
24116690 CCCAGTCTAA
* * * **
24116700 GCATACGGAGTTCTTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAAA
1 GCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAA
** * *
24116765 CGAGGGTTGCGGCAGCAGGATCGATAGCACGTATGGGGGACCAGGCTGATCCCCGGCTTGCGCA-
66 CGAGGGTTGCGGCAGCAGGATCGGCAGCA-GCAAGGGGGACCAGGCTGATCCCCGGCTTGCGCAT
* * * * * * *
24116829 TTCTGCCTCTCCAGTCGGCTGAGCACCCACACGCTCATTTCATGGATTGGCTTAGGCATACAGAG
130 TTC-ACCTCTCCAATCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* * * * * * * * * *
24116894 TACATTCCACGTCTAAGTCCCAGCCGAATTGAAGGTTATGGCAACAGGACTGGCAGCGGGATCGG
194 TACATTCCATGTCTAAGCCCCAGCCGGATTGAGGGTTGTGGTAACAGGACCGACAGCAGGATCGA
* * *
24116959 CAGCACGCAGAGGGGGACTGGGCTGATCCCCAGCTTGCGCATTATGCCTCTTTGGCTGGCCTCTC
259 CAGCACACAGAGGGGGACAGGGCTGATCCCCAGCTTGCACATTATGCCTC-TT--C-GG-----C
* * ** *
24117024 CAGTTGCCTGAGCGCTTGCACGCTCGTTTCT-TGGGTCGACTTAG
315 C----GACTGAACGCCCGCACACTCGTTT-TGTGGGTCGACTTAG
* * *
24117068 GCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGACCGGATCGGAT
1 GCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAA
* * *
24117133 CGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAAGGGGGACCAGGCTTATCCCCGGCTTGCACAT
66 CGAGGGTTGCGGCAGCAGGATCGGCAGCA-GCAAGGGGGACCAGGCTGATCCCCGGCTTGCGCAT
* **
24117198 TTCACCTCTCCAATCGACAGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGT
130 TTCACCTCTCCAATCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
** *
24117263 ACATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTTGTAACAGGACCGACAGCAGGATCGAC
195 ACATTCCATGTCTAAGCCCCAGCCGGATTGAGGGTTGTGGTAACAGGACCGACAGCAGGATCGAC
* * * *
24117328 GGTACATAGAGGGGGACAGGGCTGATCCTCAGCTTGCACATTATGCCTCTTCGGCCGACTGAACG
260 AGCACACAGAGGGGGACAGGGCTGATCCCCAGCTTGCACATTATGCCTCTTCGGCCGACTGAACG
* *
24117393 CCCGTACACTCGTTTTGTGGGTTGACTTAG
325 CCCGCACACTCGTTTTGTGGGTCGACTTAG
* * * * * * *
24117423 GCATACGGAGTTCATCCTCAGTCTAAGCAAATGGAGTTCATTGCTAGTCTAAGATCAGATCGGAC
1 GCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAA
* * * * * * *
24117488 CGAGTGTTGCAGCAGCAGGATTGGCAGCA-CACAGGGAGGACGAGGCTGATCCTCGACTTACGCA
66 CGAGGGTTGCGGCAGCAGGATCGGCAGCAGCA-AGGG-GGACCAGGCTGATCCCCGGCTTGCGCA
** * * * * * *
24117552 TTCTGTCCTCT-GACT-GACTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGG
129 TT-TCACCTCTCCAATCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
* * * *
24117615 GCT-CATTCCATGTCTAAGCACCAACCGGATTGAGGGTTGTGGTAGCGGGACCGACA
193 G-TACATTCCATGTCTAAGCCCCAGCCGGATTGAGGGTTGTGGTAACAGGACCGACA
24117671 ACACGTAGTG
Statistics
Matches: 507, Mismatches: 90, Indels: 26
0.81 0.14 0.04
Matches are distributed among these distances:
353 2 0.00
354 93 0.18
355 137 0.27
356 6 0.01
359 2 0.00
364 2 0.00
365 1 0.00
367 2 0.00
368 259 0.51
369 3 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (354 bp):
GCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAA
CGAGGGTTGCGGCAGCAGGATCGGCAGCAGCAAGGGGGACCAGGCTGATCCCCGGCTTGCGCATT
TCACCTCTCCAATCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTA
CATTCCATGTCTAAGCCCCAGCCGGATTGAGGGTTGTGGTAACAGGACCGACAGCAGGATCGACA
GCACACAGAGGGGGACAGGGCTGATCCCCAGCTTGCACATTATGCCTCTTCGGCCGACTGAACGC
CCGCACACTCGTTTTGTGGGTCGACTTAG
Found at i:24117914 original size:158 final size:158
Alignment explanation
Indices: 24117453--24117949 Score: 529
Period size: 158 Copynumber: 3.1 Consensus size: 158
24117443 GTCTAAGCAA
* * ** * *
24117453 ATGGAGTTCATTGC-TAGTCTAAGATCAGATCGGACCGAGTGTTGCAGCAGCAGGATTGGCAGCA
1 ATGGAGTTCATTCCAT-GTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCA
** * * * * * *
24117517 CACAGGGAGGA-CGAGGCTGATCCTCGACTTACGCATTCTGTC-CTCTGACTGACTCAGCGCCCG
65 CGTAGGGGGGACCGA-GATGATCCCCGACTTACGCATTCTGCCTCTCTGACCGGCTCAGCGCCCG
24117580 CACGCTCGTTTCATGGGTTGGCTTAGGCAT
129 CACGCTCGTTTCATGGGTTGGCTTAGGCAT
* * * * * ** * * * *
24117610 AAGGGGCTCATTCCATGTCTAAGCACCA-ACCGGATTGAGGGTTGTGGTAGCGGGACCGACAACA
1 ATGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCA
* * * * *
24117674 CGTAGTGGGGGACCGAGAGGATCCCCGGCTTGCGCATTATGCCTCT-TCGATCGGCTCAGCGCCC
65 CGTAG-GGGGGACCGAGATGATCCCCGACTTACGCATTCTGCCTCTCT-GACCGGCTCAGCGCCC
* * * *
24117738 GCACGCTCGTTCCGTGGGTTGACTTATGCAT
128 GCACGCTCGTTTCATGGGTTGGCTTAGGCAT
24117769 ATGGAGTTCATTCC-TAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCA
1 ATGGAGTTCATTCCAT-GTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCA
* * * * *
24117833 CGTAGGGGGGACCGAGTTGATCCCCGACTTACGCATTCTACCTCTCTGGCCGGCTGAGCACCCGC
65 CGTAGGGGGGACCGAGATGATCCCCGACTTACGCATTCTGCCTCTCTGACCGGCTCAGCGCCCGC
*
24117898 ACGCTTGTTTCATGGGTTGGCTTAGGCAT
130 ACGCTCGTTTCATGGGTTGGCTTAGGCAT
*
24117927 ACGGAGTTCATTCCATGTCTAAG
1 ATGGAGTTCATTCCATGTCTAAG
24117950 CATACGGAGC
Statistics
Matches: 269, Mismatches: 61, Indels: 19
0.77 0.17 0.05
Matches are distributed among these distances:
157 44 0.16
158 126 0.47
159 99 0.37
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
ATGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCAC
GTAGGGGGGACCGAGATGATCCCCGACTTACGCATTCTGCCTCTCTGACCGGCTCAGCGCCCGCA
CGCTCGTTTCATGGGTTGGCTTAGGCAT
Found at i:24117973 original size:26 final size:26
Alignment explanation
Indices: 24117923--24117975 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24117913 GTTGGCTTAG
* *
24117923 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24117949 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24117975 G
1 G
24117976 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24118672 original size:26 final size:26
Alignment explanation
Indices: 24118642--24118695 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
24118632 TGGGTTGACT
24118642 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
*
24118668 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
24118694 TA
1 TA
24118696 AGATCGGACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:24118974 original size:159 final size:156
Alignment explanation
Indices: 24118742--24119204 Score: 387
Period size: 159 Copynumber: 2.9 Consensus size: 156
24118732 GGCAGCACAT
* * * * * * ** * * * *
24118742 AGGGGGGGCCGAGCAGATCCCTGGCTTACGCATTTTGCCTCTCCGGTCGGTTGAGTGCCCACAAG
1 AGGGGGGACCGGGCCGATCCCCGGCTTACGTATTATGCCTCTCCGACCGCTCGAGTGCCCGCACG
* * * * *
24118807 CCCATTTCGTGGGTTGGCTTAGCCATAGGGAGCTCATTTCATGCCTAAGCCCCAGCCGGACTGAG
66 CTCGTTTCGTGGGTTGGCTTAGACATACGGAG-TCATTCCATG-CTAAGCCCCAGCCGGACTGAG
**
24118872 GGTTGTGGTAGTAGGATTG-GTAGCACGC
129 GGTTGTGGTAGTAGGA-TGAACAGCACGC
* **
24118900 AGAGGGGGACCGGGCCGATCCCCGGCTTGCGTATTATGCCTCTTTGACCGACTC-AGTGCCCGCA
1 AG-GGGGGACCGGGCCGATCCCCGGCTTACGTATTATGCCTCTCCGACCG-CTCGAGTGCCCGCA
* * * * ** *
24118964 CGCTTGTTTCGTGGGTTGACTTATACATACAGAGTTCATTCCCAAT-CTAAG-ATCGGACCGGAC
64 CGCTCGTTTCGTGGGTTGGCTTAGACATACGGAG-TCATT-CC-ATGCTAAGCCCCAG-CCGGAC
* * * *
24119027 CGAGGGTTGTGGCAATAGGATGAACAGCACGT
125 TGAGGGTTGTGGTAGTAGGATGAACAGCACGC
* * ** * *
24119059 AGGGGGGACCGGGTCGATCCCCGGCTTACGTATTTTGCCTCTCCGGTCGGTCGAGTGCCCGCATG
1 AGGGGGGACCGGGCCGATCCCCGGCTTACGTATTATGCCTCTCCGACCGCTCGAGTGCCCGCACG
* * * *
24119124 CTCGTTTCGTGGGTTGGCTTAGGCGTACGGAGTAGATTCCACGTCTAAGCCCCAGCCGG-CTCGA
66 CTCGTTTCGTGGGTTGGCTTAGACATACGGAGT-CATTCCATG-CTAAGCCCCAGCCGGACT-GA
*
24119188 GGGTTGTGGTAGCAGGA
128 GGGTTGTGGTAGTAGGA
24119205 CTGATAACGG
Statistics
Matches: 235, Mismatches: 58, Indels: 24
0.74 0.18 0.08
Matches are distributed among these distances:
156 1 0.00
157 6 0.03
158 111 0.47
159 113 0.48
160 2 0.01
161 2 0.01
ACGTcount: A:0.17, C:0.26, G:0.32, T:0.24
Consensus pattern (156 bp):
AGGGGGGACCGGGCCGATCCCCGGCTTACGTATTATGCCTCTCCGACCGCTCGAGTGCCCGCACG
CTCGTTTCGTGGGTTGGCTTAGACATACGGAGTCATTCCATGCTAAGCCCCAGCCGGACTGAGGG
TTGTGGTAGTAGGATGAACAGCACGC
Found at i:24119172 original size:158 final size:156
Alignment explanation
Indices: 24118668--24119156 Score: 462
Period size: 158 Copynumber: 3.1 Consensus size: 156
24118658 ATCCCCAGTC
* ** * * *
24118668 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCAGCATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGAT-G
* * * * * *
24118733 GCAGCACATAGGGGGGGCCGAGCAGATCCCTGGCTTACGCATTTTGCCTCTCCGGTCGGTTGAGT
65 GCAGCACGTAGGGGGGACCGGGC-GATCCCCGGCTTACGTATTTTGCCTCTCCGGTCGGTCGAGT
* * *
24118798 GCCCACAAGCCCATTTCGTGGGTTGGCT
129 GCCCGCAAGCTCGTTTCGTGGGTTGGCT
* * * * * * ** * *
24118826 TAGCCATAGGGAGCTCATT-TCATGCCTAAG-CCCCAGCCGGACTGAGGGTTGTGGTAGTAGGAT
1 TAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGTGGCAGTAGGA-
* * * * ** ** *
24118889 TGGTAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGTATTATGCCTCTTTGACCGACTC
63 TGGCAGCACGTAG-GGGGGACCGGG-CGATCCCCGGCTTACGTATTTTGCCTCTCCGGTCG-GTC
* * *
24118954 -AGTGCCCGCACGCTTGTTTCGTGGGTTGACT
125 GAGTGCCCGCAAGCTCGTTTCGTGGGTTGGCT
** * * *
24118985 TATACATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAATAGGATGA
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGATG-
*
24119050 ACAGCACGTAGGGGGGACCGGGTCGATCCCCGGCTTACGTATTTTGCCTCTCCGGTCGGTCGAGT
65 GCAGCACGTAGGGGGGACCGGG-CGATCCCCGGCTTACGTATTTTGCCTCTCCGGTCGGTCGAGT
*
24119115 GCCCGCATGCTCGTTTCGTGGGTTGGCT
129 GCCCGCAAGCTCGTTTCGTGGGTTGGCT
*
24119143 TAGGCGTACGGAGT
1 TAGGCATACGGAGT
24119157 AGATTCCACG
Statistics
Matches: 252, Mismatches: 69, Indels: 20
0.74 0.20 0.06
Matches are distributed among these distances:
157 6 0.02
158 129 0.51
159 111 0.44
160 6 0.02
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.24
Consensus pattern (156 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGATGG
CAGCACGTAGGGGGGACCGGGCGATCCCCGGCTTACGTATTTTGCCTCTCCGGTCGGTCGAGTGC
CCGCAAGCTCGTTTCGTGGGTTGGCT
Found at i:24119359 original size:26 final size:26
Alignment explanation
Indices: 24119330--24119382 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24119320 GTTGACTTAG
*
24119330 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
24119356 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24119382 G
1 G
24119383 ATTACACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24119855 original size:355 final size:360
Alignment explanation
Indices: 24118989--24119923 Score: 1057
Period size: 368 Copynumber: 2.6 Consensus size: 360
24118979 TTGACTTATA
* * * * *
24118989 CATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAATAGGA-TGAACA
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATTG-ACA
* * * * * * * *
24119053 GCACGTAGGGGGGACCGGGTCGATCCCCGGCTTACGTATTTTGCCTCTCCGGTCG-GTCGAGTGC
65 GCACGCAGGGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGACT-GAGTGC
* * * *
24119117 CCGCATG-CTCGTTTCGTGGGTTGGCTTAGGCGTACGGAGTAGATTCCACGTCTAAGCCCCAGCC
129 CCGCACGACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCC
* ** * * *
24119181 GGCTCGAGGGTTGTGGTAGCAGGACTGATAACGGGATCGACAGTATATAGAGGGGGACCGGGCTG
194 GAC-CGAGGGTTGTGGTAGCAGGACCCACAACGGGATCGACAGCATATAGAGGGAGACCGGGCTG
* ** *
24119246 ATCCCTGACTTGTGCATTATGCCTCTTCGACCGGCCTCTTCGGTCGACTGAGAGCCCGCATGCTC
258 ATCCCCGACTTACGCATTATGCCTCTTCGA-----C-C-TCGG-CGACTGAGAGCCCGCACGCTC
* *
24119311 GTTTCATGGGTTGACTTAGGCATACAGAGTTTATCCCCAGTCTAAG
315 GTTTCATGGGTTGACTTAGGCATACAGAGATCATCCCCAGTCTAAG
* * * * * *
24119357 CATACGGAGTTCATTCCCAGTCTAAGATTACACCGGATCGAGGGTTGCGGTAGCAGGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATTGACAG
* * * * * * **
24119422 CACGCAAGAGGAACCAAGTCGATCCTCGGCTTGCGCATTCTGCTTCTCTGGCCGACTGAGCACCC
66 CACGCAGGGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGTGCCC
* *
24119487 GCACGA-TCGTTTCATGGGTTGGCTTAGGCATACGGTGTACATTCCACGTCTAAGCCCCAACCGA
131 GCACGACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCGA
* *
24119551 TCCGAGGGTTGTGGTAGCAGGACCCACAGCGGGATCGACAGCATGTAGAGGGAGACCGGGCTGAT
196 -CCGAGGGTTGTGGTAGCAGGACCCACAACGGGATCGACAGCATATAGAGGGAGACCGGGCTGAT
* * * * *
24119616 CCCCGGCTTACGCATTATGCCTC-TCTGA-C-C-G-G-CTGAGTGCCCGTACGCTTGTTTCGTGG
260 CCCCGACTTACGCATTATGCCTCTTC-GACCTCGGCGACTGAGAGCCCGCACGCTCGTTTCATGG
*
24119675 GTTGACTTAGGCATATAGAGATCATCCCCAGTCTAAG
324 GTTGACTTAGGCATACAGAGATCATCCCCAGTCTAAG
* * *
24119712 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCCAGGGTTGCAGCAGTAGGATTGGCAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATTGACAG
* * * *
24119777 CACGCAGGGGGGATCAGGTCGATCTTCGGCTTGTGCATTCTGCCACTCCGGCCGACTGAGTGCCC
66 CACGCAGGGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGTGCCC
* * * * * *
24119842 GCA-GACCCGTTTCATGGGATGGGTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCTAGCCG
131 GCACGACTCGTTTCATGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCCCAGCC-
24119905 GACCGAGGGTTGTGGTAGC
194 GACCGAGGGTTGTGGTAGC
24119924 GGGATCGATA
Statistics
Matches: 477, Mismatches: 82, Indels: 29
0.81 0.14 0.05
Matches are distributed among these distances:
354 2 0.00
355 231 0.48
356 4 0.01
358 1 0.00
359 1 0.00
361 1 0.00
367 2 0.00
368 232 0.49
369 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (360 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATTGACAG
CACGCAGGGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGTGCCC
GCACGACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCGA
CCGAGGGTTGTGGTAGCAGGACCCACAACGGGATCGACAGCATATAGAGGGAGACCGGGCTGATC
CCCGACTTACGCATTATGCCTCTTCGACCTCGGCGACTGAGAGCCCGCACGCTCGTTTCATGGGT
TGACTTAGGCATACAGAGATCATCCCCAGTCTAAG
Found at i:24120043 original size:159 final size:159
Alignment explanation
Indices: 24119711--24120214 Score: 371
Period size: 159 Copynumber: 3.2 Consensus size: 159
24119701 CCCAGTCTAA
** * *** * * *
24119711 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCCAGGGTTGCAGCAGTAGGATTGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCGGACCGAGGGTTATGGCAGCAGGATCGAC
* * * * * ** * * * * *
24119775 AGCACGC-AGGGGGGATCAGGTCGATCTTCGGCTTGTGCATTC-TGCCACTCCGGCCGACTGAGT
65 AGCACACAAGAGGAGACCGGGTCGATCACCGGCTTGCGCA-TCATGCCTCTCCGACCGACTAAGC
* **
24119838 GCCCGCAGAC-C-CGTTTCATGGGATGGGTTAG
129 GCCCG-A-ACGCTCGTTTCATGGGTTGACTTAG
* * * * * *
24119869 GCATAGGGAGCTCATTCCATGTCTAAGCCCTAG-CCGGACCGAGGGTTGTGGTAGCGGGATCGAT
1 GCATACGGAGTTCATTCCATGTCTAAGCCC-AGACCGGACCGAGGGTTATGGCAGCAGGATCGAC
* * * *
24119933 AGCACGC-AGAAGGAGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGACC-AGCTCAA
65 AGCACACAAG-AGGAGACCGGGTCGATCACCGGCTTGCGCATCATGCCTCTCCGACCGA-CT-AA
* * * *
24119996 -CGTCCGCACGCTCGTTTCGTGGGTTGACTTAT
127 GCGCCCGAACGCTCGTTTCATGGGTTGACTTAG
* ** * *
24120028 GCATACGGAGTTCATTCCCA-GTATAAGATCAGACCGGACCGAGTGTTATGGCAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCGGACCGAGGGTTATGGCAGCAGGATCGAC
* * * * * * *
24120092 AGCACACAAGGGGGGACTGGGTCGTTCATCGGCTTGCGCATCCTGCCTCTCCGATCGACTAAGCG
65 AGCACACAAGAGGAGACCGGGTCGATCACCGGCTTGCGCATCATGCCTCTCCGACCGACTAAGCG
* * *
24120157 CCCGAATGCTCGTTTCATGGTTTGGCTTAG
130 CCCGAACGCTCGTTTCATGGGTTGACTTAG
*
24120187 GCATACGGAGTTCATTCAATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
24120215 ATACAGAGCT
Statistics
Matches: 267, Mismatches: 65, Indels: 27
0.74 0.18 0.08
Matches are distributed among these distances:
157 5 0.02
158 62 0.23
159 193 0.72
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCAGACCGGACCGAGGGTTATGGCAGCAGGATCGACA
GCACACAAGAGGAGACCGGGTCGATCACCGGCTTGCGCATCATGCCTCTCCGACCGACTAAGCGC
CCGAACGCTCGTTTCATGGGTTGACTTAG
Found at i:24120920 original size:26 final size:26
Alignment explanation
Indices: 24120884--24120936 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24120874 GTTGGCTTAG
24120884 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
24120910 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24120936 G
1 G
24120937 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24121269 original size:26 final size:26
Alignment explanation
Indices: 24121239--24121291 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24121229 GTTGACCTAG
24121239 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24121265 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24121291 G
1 G
24121292 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24121964 original size:26 final size:26
Alignment explanation
Indices: 24121934--24121985 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
24121924 GTTGACTTAG
*
24121934 GCATATAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
24121960 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
24121986 TATCAGACCG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:24122185 original size:695 final size:696
Alignment explanation
Indices: 24120845--24123570 Score: 3316
Period size: 695 Copynumber: 3.9 Consensus size: 696
24120835 CTCTTTGGTG
* *
24120845 GGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATCCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
* * * * * * **
24120910 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CAGATCGAAGGTTGCGACAATAGGATCGAC
66 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTCGGATCGAGGGTTGCGGCAACAAGATCGGT
* * * * * * * * ** *
24120974 AGCATGTAGGGGGGACCGGGTCAATCCCTGACTTGCACATTTTGCCTCTCCGATCGGTTGAGCGC
131 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGCGC
* **
24121039 CCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAACCCCAGCCA
196 CCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAACCCCAGCCA
* ** * *
24121104 GATCGAGGGTTGTGGTAGAAAGA-TCGGTAGAGGGATCGGCAGCACGCAGAGGGGGACTGGGCTG
261 GATCGAGGGTTGTGGTAGAAAGACT-GGTAGAGGGATTGGCAGCATACAGAAGGGGACCGGGCTG
* *
24121168 ATCCCCGGCTTACGCATTATGCCTCTCCGACTGGCTAAGCGCCCGCACTCTCGTTTCATGGGTTG
325 ATCCCCGGCTTACGCATTATGCCTCTCCGACTGGCTGAGCGCCCGCACTCTCATTTCATGGGTTG
* *
24121233 ACCTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
390 ACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * *
24121298 CTGGATCGAGGGTTGCGATAGCAGGATCGATAGCATGCAGGGGGATCGGGTCGATCCCCGGCTTG
455 CCGGATCAAGGGTTGCGATAGCAGGATCGGTAGCACGCAGGGGGATCGGGTCGATCCCCGACTTG
* * * * * * * * *
24121363 CGTATTCTGTCTCTCCGACCGGCTGAGCACCTGAACGCACGTTTTGTGGGTTAGCTTAGGTATAC
520 CGAATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
24121428 GGAGTACATTACACGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGA-CTGACAACGGG
585 GGAGTACATTACACGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATC-GACAACGGG
24121492 ATCGGCAGCATGCAGAAGGGGATCGGGCTGATCCCCGGCTCTCCGACC
649 ATCGGCAGCATGCAGAAGGGGATCGGGCTGATCCCCGGCTCTCCGACC
** * ** * **
24121540 GGCTGAGCGCCCGTGCGCTCATTTCGTTCGTTGACTTAGGCGTATGGAGTTCATCCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
* * *
24121605 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACT-GGATTGAGGGTTGCAGCAACAAGATCGGT
66 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTCGGATCGAGGGTTGCGGCAACAAGATCGGT
* * * * *
24121669 AGCACGCAGGGGGGATCAGGCCGATCCCCGGCTTGCACATTCTACCTCTCTGGTCGGCTGAGCAC
131 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGCGC
* *
24121734 CCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAACCCCGGCCA
196 CCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAACCCCAGCCA
* * * *
24121799 GATAGAGGGTTGTGGTAGAAAGACTGGTAGAGGGTTTGACAGCATACAAAAGGGGACCGGGCTGA
261 GATCGAGGGTTGTGGTAGAAAGACTGGTAGAGGGATTGGCAGCATACAGAAGGGGACCGGGCTGA
* * * *
24121864 TCCTCGGCTTATGCATTATGCCTCTTCGACTGGCTGAGCGCCCGTACTCTCATTTCATGGGTTGA
326 TCCCCGGCTTACGCATTATGCCTCTCCGACTGGCTGAGCGCCCGCACTCTCATTTCATGGGTTGA
* * *
24121929 CTTAGGCATATAGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAATATCAGAC
391 CTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * ***
24121994 CGGATCGAGGGTTGCGATAGCAGGATTGGTAGCACGTAGGGGGATCGAGTGGATCCTTAACTTGC
456 CGGATCAAGGGTTGCGATAGCAGGATCGGTAGCACGCAGGGGGATCGGGTCGATCCCCGACTTGC
* * * *
24122059 GCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACA
521 GAATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * * * * *
24122124 GAGTACATTACACATCTAAGCCCCAGCC-GAACTGAAGGTTGTGGTACCAGGATCAACAACGGGA
586 GAGTACATTACACGTCTAAGCCCCAGCCAG-ACCGAGGGTTGTGGCAGCAGGATCGACAACGGGA
* * * *
24122188 TCGACAGCATGCAGAGGGGGATCGGGCTGATCCCTGGCTCTCCAACC
650 TCGGCAGCATGCAGAAGGGGATCGGGCTGATCCCCGGCTCTCCGACC
* * * * ** * * *
24122235 AGCTAAACGCCTGCGTGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATCACCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
* * *
24122300 GCATATGGAGTTTATTCCCAGTCTAAGATCGGA-TCGGATCGAGGGTTGCGGCAGCAAGATCGGT
66 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTCGGATCGAGGGTTGCGGCAACAAGATCGGT
* * **
24122364 AGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCACATTCTGCCTCTCTGGCCGATTGAGCGC
131 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGCGC
* * *
24122429 CCGTACGCTCATTTCATGGGTTGGCTTAGGTATACGGAGTACATTCCACATCTAAACCCCAGCCA
196 CCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAACCCCAGCCA
* * * * *
24122494 GACCGAGGGTTATGGCAGAAAGACTGGTAGAGGGTTTGGCAGCA-AGCAGAAGGGGATCC-GGTT
261 GATCGAGGGTTGTGGTAGAAAGACTGGTAGAGGGATTGGCAGCATA-CAGAAGGGGA-CCGGGCT
*
24122557 GATCCCCGGCTTACGCATTATGCCTCTCCGACTGGCTGAGTGCCCGCACTCTCATTTCATGGGTT
324 GATCCCCGGCTTACGCATTATGCCTCTCCGACTGGCTGAGCGCCCGCACTCTCATTTCATGGGTT
* ** **
24122622 GACTTAGCCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGG
389 GACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
24122687 ACCGGATCAAGGGTTGCGATAGCAGGATCGGTAGCACGCAGGGGGATCGGGTCGATCCCCGACTT
454 ACCGGATCAAGGGTTGCGATAGCAGGATCGGTAGCACGCAGGGGGATCGGGTCGATCCCCGACTT
* * * * * *
24122752 GCAAATTCTACCTCTCCGATCGGTTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATA
519 GCGAATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* * *
24122817 CGGAGTACATTACACGTCTAAGCCCCAGCCAGACCGAGGGTTGTAGCAGCAGGATCGACAGCGAG
584 CGGAGTACATTACACGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGACAACGGG
* * * * *
24122882 ATTGGCAGCACGGAGAAGGGGATCAGGCTGATCCCCGACTTGTGCATTATGCCTCTCCGATC
649 ATCGGCAGCATGCAGAAGGGGATCGGGCTGAT-CCC--C----G------G-CTCTCCGACC
*
24122944 GGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
* * * *
24123009 GCATACGGAGTTCATTCCCAGTCTAAGATTGG-GTCGGATCGCGGGTTGCGGCAGCAAGATCGGT
66 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTCGGATCGAGGGTTGCGGCAACAAGATCGGT
* ** * * * * * *
24123073 AGCACGCAGAGGGGATCGGGTCGATCTTCAGTTTGCGCATCCTGCCCCTCTGGCCTGCTGAGCGC
131 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGCGC
* * * *
24123138 CCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTACACGTCTAAGCCCCAGCCA
196 CCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAACCCCAGCCA
* * * * ** * * * *
24123203 GATCGAGGGTTGTGATAGCAGGGCTGACAGTGGGATTGGCAGCATGCAGAGGGGGACCGAGCTGA
261 GATCGAGGGTTGTGGTAGAAAGACTGGTAGAGGGATTGGCAGCATACAGAAGGGGACCGGGCTGA
* * * ** **
24123268 TCCCCGGCTTGCGCATTATGCCTCTCCGGCCTGTC-GAGCGCCCGTTCTCTCATTTTGTGGGTTG
326 TCCCCGGCTTACGCATTATGCCTCTCC-GACTGGCTGAGCGCCCGCACTCTCATTTCATGGGTTG
* *
24123332 ACTTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGA
390 ACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * ** ** * * * * *
24123397 CCGGATCAAAGGTTGCGACAATAGGATCGACAGCACGCAGGGGGGACCGGGCCTATCCCTGGCTT
455 CCGGATCAAGGGTTGCGATAGCAGGATCGGTAGCACGCA-GGGGGATCGGGTCGATCCCCGACTT
* * * * ** * * * * * *
24123462 ACGCATTCTACCTCTCTGGCCGACTGAGCACCTGCATGCCCGTTT-GTGGGTTGGTTTAGGCATG
519 GCGAATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* * * *
24123526 GGGAGCT-CATTCCATGTCTAAACCCCAGCCAGACCGAGGGTTGTG
584 CGGAG-TACATTACACGTCTAAGCCCCAGCCAGACCGAGGGTTGTG
24123571 ACAGAGGGAC
Statistics
Matches: 1727, Mismatches: 276, Indels: 42
0.84 0.13 0.02
Matches are distributed among these distances:
694 3 0.00
695 1181 0.68
696 8 0.00
702 1 0.00
708 3 0.00
709 474 0.27
710 57 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (696 bp):
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTCGGATCGAGGGTTGCGGCAACAAGATCGGT
AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGCGC
CCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAACCCCAGCCA
GATCGAGGGTTGTGGTAGAAAGACTGGTAGAGGGATTGGCAGCATACAGAAGGGGACCGGGCTGA
TCCCCGGCTTACGCATTATGCCTCTCCGACTGGCTGAGCGCCCGCACTCTCATTTCATGGGTTGA
CTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CGGATCAAGGGTTGCGATAGCAGGATCGGTAGCACGCAGGGGGATCGGGTCGATCCCCGACTTGC
GAATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
GAGTACATTACACGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGACAACGGGAT
CGGCAGCATGCAGAAGGGGATCGGGCTGATCCCCGGCTCTCCGACC
Found at i:24122216 original size:354 final size:353
Alignment explanation
Indices: 24121530--24123570 Score: 2003
Period size: 355 Copynumber: 5.8 Consensus size: 353
24121520 TGATCCCCGG
* * ** * **
24121530 CTCTCCGACCGGCTGAGCGCCCGTGCGCTCATTTCGTTCGTTGACTTAGGCGTATGGAGTTCATC
1 CTCTCCGACTGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATC
* * * * *
24121595 CCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGATTGAGGGTTGC-AGCAA
66 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGA-CAG
* * * * *
24121659 CAAGATCGGTAGCACGCAGGGGGGATCAGGCCGATCCCCGGCTTGCACATTCTACCTCTCTGGTC
130 CAGGATCGGTAGCACGCA-GGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTC
* * * * *
24121724 GGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAA
194 GGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTACACGTCTAA
* * ** * * * * * * * *
24121789 ACCCCGGCCAGATAGAGGGTTGTGGTAGAAAGACTGGTA-GAGGGTTTGACAGCATACAAAAGGG
259 GCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGA-TCG-ACAAGGGATTGGCAGCATGCAGAAGGG
* * *
24121853 GACCGGGCTGATCCTCGGCTTATGCATTATGC
322 GATCGGGCTGATCCCCGGCTTACGCATTATGC
* * * *
24121885 CTCTTCGACTGGCTGAGCGCCCGTACTCTCATTTCATGGGTTGACTTAGGCATATAGAGTTCATC
1 CTCTCCGACTGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATC
* * *
24121950 CCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAATATCAGACCGGATCGAGGGTTGCGATAGC
66 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGC
* * * * **** *
24122015 AGGATTGGTAGCACGTAGGGGGATCGAGTGGATCCTTAACTTGCGCATTCTGCCTCTCCGGTCGG
131 AGGATCGGTAGCACGCAGGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGG
* * * *
24122080 CTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTACACATCTAAGC
196 CTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTACACGTCTAAGC
* * * * * * *
24122145 CCCAGCC-GAACTGAAGGTTGTGGTACCAGGATCAACAACGGGATCGACAGCATGCAGAGGGGGA
261 CCCAGCCAG-ACCGAGGGTTGTGGTAGCAGGATCGACAA-GGGATTGGCAGCATGCAGAAGGGGA
*
24122209 TCGGGCTGATCCCTGGCTCT-C-CA--A---
324 TCGGGCTGATCCCCGGCT-TACGCATTATGC
* * * * *
24122233 ----CC-A---GCTAAACGCCTGCGT--GCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCA
1 CTCTCCGACTGGCTGAGCGCC--CGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCA
* * * * * *
24122288 TCACCAGTCTAAGCATATGGAGTTTATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCA
64 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACA
* * * * *
24122353 GCAAGATCGGTAGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCACATTCTGCCTCTCTGGC
129 GCAGGATCGGTAGCACGCA-GGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGGT
** * * * *
24122418 CGATTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGTATACGGAGTACATTCCACATCTA
193 CGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTACACGTCTA
* * * * * * * * *
24122483 AACCCCAGCCAGACCGAGGGTTATGGCAGAAAGACTGGTA-GAGGGTTTGGCAGCAAGCAGAAGG
258 AGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGA-TCG-ACAAGGGATTGGCAGCATGCAGAAGG
* *
24122547 GGATCCGGTTGATCCCCGGCTTACGCATTATGC
321 GGATCGGGCTGATCCCCGGCTTACGCATTATGC
* * * * * **
24122580 CTCTCCGACTGGCTGAGTGCCCGCACTCTCATTTCATGGGTTGACTTAGCCATATGGAGTTCATC
1 CTCTCCGACTGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATC
** * *
24122645 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCAAGGGTTGCGATAGC
66 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGC
* * * *
24122710 AGGATCGGTAGCACGCAGGGGGATCGGGTCGATCCCCGACTTGCAAATTCTACCTCTCCGATCGG
131 AGGATCGGTAGCACGCAGGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGG
* * * * *
24122775 TTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTACACGTCTAAGC
196 CTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTACACGTCTAAGC
* * * *
24122840 CCCAGCCAGACCGAGGGTTGTAGCAGCAGGATCGAC-AGCGAGATTGGCAGCACGGAGAAGGGGA
261 CCCAGCCAGACCGAGGGTTGTGGTAGCAGGATCGACAAG-G-GATTGGCAGCATGCAGAAGGGGA
* * **
24122904 TCAGGCTGATCCCCGACTTGTGCATTATGC
324 TCGGGCTGATCCCCGGCTTACGCATTATGC
*
24122934 CTCTCCGA-TCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
1 CTCTCCGACT-GGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
** ** * *
24122998 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGGTCGGATCGCGGGTTGCGGCAG
65 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAG
* ** * * * * * * *
24123063 CAAGATCGGTAGCACGCAGAGGGGATCGGGTCGATCTTCAGTTTGCGCATCCTGCCCCTCTGGCC
130 CAGGATCGGTAGCACGCAG-GGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTC
* * *
24123128 TGCTGAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTACACGTCTAA
194 GGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTACACGTCTAA
* * * * *
24123193 GCCCCAGCCAGATCGAGGGTTGTGATAGCAGG-GCTGACAGTGGGATTGGCAGCATGCAGAGGGG
259 GCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGATC-GACA-AGGGATTGGCAGCATGCAGAAGGG
* * *
24123257 GACCGAGCTGATCCCCGGCTTGCGCATTATGC
322 GATCGGGCTGATCCCCGGCTTACGCATTATGC
* * * * * *
24123289 CTCTCCGGCCTGTC-GAGCGCCCGTTCTCTCATTTTGTGGGTTGACTTAAGCATACAGAGTTCAT
1 CTCTCC-GACTGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
* * * *
24123353 CCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCAAAGGTTGCGACAA
65 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAG
* ** * * * * * * * * *
24123418 TAGGATCGACAGCACGCAGGGGGGACCGGGCCTATCCCTGGCTTACGCATTCTACCTCTCTGGCC
130 CAGGATCGGTAGCACGCA-GGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTC
* * * * * * * * ** * *
24123483 GACTGAGCACCTGCATGCCCGTTT-GTGGGTTGGTTTAGGCATGGGGAGCT-CATTCCATGTCTA
194 GGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG-TACATTACACGTCTA
*
24123546 AACCCCAGCCAGACCGAGGGTTGTG
258 AGCCCCAGCCAGACCGAGGGTTGTG
24123571 ACAGAGGGAC
Statistics
Matches: 1389, Mismatches: 257, Indels: 81
0.80 0.15 0.05
Matches are distributed among these distances:
340 112 0.08
341 153 0.11
342 8 0.01
343 2 0.00
344 2 0.00
351 3 0.00
352 5 0.00
353 11 0.01
354 509 0.37
355 576 0.41
356 6 0.00
357 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (353 bp):
CTCTCCGACTGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATC
CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGC
AGGATCGGTAGCACGCAGGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGG
CTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTACACGTCTAAGC
CCCAGCCAGACCGAGGGTTGTGGTAGCAGGATCGACAAGGGATTGGCAGCATGCAGAAGGGGATC
GGGCTGATCCCCGGCTTACGCATTATGC
Found at i:24122310 original size:26 final size:26
Alignment explanation
Indices: 24122274--24122326 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24122264 GTTCACTTAG
24122274 GCATACGGAGTTCA-TCACCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
* *
24122300 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24122326 G
1 G
24122327 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24122664 original size:26 final size:26
Alignment explanation
Indices: 24122630--24122681 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
24122620 TTGACTTAGC
*
24122630 CATATGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
24122656 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
24122682 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:24123019 original size:26 final size:26
Alignment explanation
Indices: 24122983--24123035 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24122973 GTTGACTTAG
24122983 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
24123009 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24123035 G
1 G
24123036 ATTGGGTCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24123374 original size:26 final size:26
Alignment explanation
Indices: 24123335--24123390 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
24123325 TGGGTTGACT
*
24123335 TAAGCATACAGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAATC
* *
24123361 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACAGAGTTCATCCCCAATC
24123387 TAAG
1 TAAG
24123391 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAATC
Found at i:24124571 original size:26 final size:26
Alignment explanation
Indices: 24124535--24124585 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
24124525 TTAACCTAGG
*
24124535 CATATGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
*
24124561 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
24124586 GATTGAACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:24124930 original size:26 final size:26
Alignment explanation
Indices: 24124900--24124952 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24124890 GTTAACTCAG
*
24124900 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
24124926 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24124952 G
1 G
24124953 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24125198 original size:368 final size:368
Alignment explanation
Indices: 24124498--24125499 Score: 1232
Period size: 368 Copynumber: 2.7 Consensus size: 368
24124488 TCTGGTCGGT
** * *
24124498 TGAGCGCCCGCACGCTCGTTTTGTGGGTTAAC-CTAGGCATATGGAGTTCATCCCCAGTCTAACC
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTAACTC-AGGCATACGGAGTTCATCCCCAGTCTAAGC
* * *
24124562 ATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGATC-AAGAGTTGCGGTAGCAGGATC-ACAA
65 ATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAAG-GTTGCGGTAGCAGGATCGACAG
* * ** ** * * *
24124625 AACGTA-AGGGGATCGGGCCAATCCCCGGCTTGTGCATTCTGTCTCTCCAGTCGACTGAGCAACT
129 CACGTAGGGGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCCAGTCGACTGAGCACCC
* * * * *
24124689 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGACTACATTTCATGTCTAAGCCCCAGCCAGA
194 GTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGA
* * ** * *
24124754 CCGAGGGTTGTGGTAGCAGGACCGGTAACGGGATCGACAGCACACAGAGGGGTACCGGGCTGATC
259 CCGAGGGTTGCGGCAGCAGGACCGACAACGGGATCGACAACACAAAGAGGGGTACCGGGCTGATC
* * * *
24124819 CTCGACTTACGCATTATGCCTCTTCGATCGACCTTTCTGATCGAC
324 CTCGACTTACGCATTATGCCTCTCCGACCGACCTCTCCGATCGAC
** *
24124864 TGAGTTCTCGCACGCTCGTTTCATGGGTTAACTCAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTAACTCAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* * * * *
24124929 TATAGAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAAGGTTGCGGCAGCAAGATCGACAGCA
66 TACAGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAAGGTTGCGGTAGCAGGATCGACAGCA
**
24124994 CGTAGGGGGGATCGGGCTGATCCCCAACTTACGCATTCTGCCTCTCCAGTCGACTGAGCACCCGT
131 CGTAGGGGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCCAGTCGACTGAGCACCCGT
* * * * *
24125059 ACGCTTGTTTCATTGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGACC
196 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGACC
* * *
24125124 GAGGGTTGCGGCAGCAGGGCCGACAGCGGGATCGACAACATGCAAAGA-GGG-ATCGGG-TAGAT
261 GAGGGTTGCGGCAGCAGGACCGACAACGGGATCGACAACA--CAAAGAGGGGTACCGGGCT-GAT
* * * *
24125186 CC-CTGGCTTACGCATTATGCCTCTCCGACCGGCCTCTCCGGTCGGC
323 CCTC-GACTTACGCATTATGCCTCTCCGACCGACCTCTCCGATCGAC
* * * *
24125232 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATCCCTAGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTAACTCAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* * * * *
24125297 TACAGAGTTCATTCCCAGTCTAAGATTAGATCGGATCGAGGGTTGCGGTAGCAGGATTGGCAGCA
66 TACAGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAAGGTTGCGGTAGCAGGATCGACAGCA
* * * *
24125362 TGCAGGGGGGATCGGGCTGATCCCTGGCTTACGCATTCTGCCTCTCC-GACTGACTGAGCACCCG
131 CGTAGGGGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCCAGTC-GACTGAGCACCCG
* * * *
24125426 TACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGCT-CATTCTATGTCTAAGCCTCAGCCGGA
195 TACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCATGTCTAAGCCCCAGCCGGA
24125490 CCGAGGGTTG
259 CCGAGGGTTG
24125500 TGGTAGTGGG
Statistics
Matches: 541, Mismatches: 85, Indels: 18
0.84 0.13 0.03
Matches are distributed among these distances:
366 103 0.19
367 16 0.03
368 413 0.76
369 4 0.01
370 5 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (368 bp):
TGAGCGCCCGCACGCTCGTTTCATGGGTTAACTCAGGCATACGGAGTTCATCCCCAGTCTAAGCA
TACAGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAAGGTTGCGGTAGCAGGATCGACAGCA
CGTAGGGGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCCAGTCGACTGAGCACCCGT
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGACC
GAGGGTTGCGGCAGCAGGACCGACAACGGGATCGACAACACAAAGAGGGGTACCGGGCTGATCCT
CGACTTACGCATTATGCCTCTCCGACCGACCTCTCCGATCGAC
Found at i:24125297 original size:26 final size:26
Alignment explanation
Indices: 24125268--24125320 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24125258 GTTGACTTAG
* *
24125268 GCATACGGAGTTTA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
24125294 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
24125320 G
1 G
24125321 ATTAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:24125626 original size:159 final size:158
Alignment explanation
Indices: 24125294--24125794 Score: 433
Period size: 159 Copynumber: 3.2 Consensus size: 158
24125284 CCTAGTCTAA
* * * * ** * *
24125294 GCATACAGAGTTCATTCCCA-GTCTAAGATTA-GATCGGATCGAGGGTTGCGGTAGCAGGATTGG
1 GCATACGGAGTTCATT-CCATGTCTAAGA-TAGGACCAGACCGAGGGTTGCAATAGCAGGATCGA
* * * ** * * * * * *
24125357 CAGCATGCAGG-GGGGATCGGGCTGATCCCTGGCTTACGCATTCTGCCTCTCCGACTGACTGAGC
64 CAGCATGCAGGAAGAGACCAAGCCGATCCCTGGCTTGCGCATT-TGCCTCTTCGGCCGGCTGAGC
* * *
24125421 ACCCGTACGCCCGTTTCGTGGGTTGGCTTAG
128 ACCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * *** **
24125452 GCATAAGGAGCTCATTCTATGTCTAAGCCTCA-G-CCGGACCGAGGGTTGTGGTAGTGGGATCGA
1 GCATACGGAGTTCATTCCATGTCTAAG-AT-AGGACCAGACCGAGGGTTGCAATAGCAGGATCGA
* *
24125515 CAGCATGCAGAGAAG-GACCAAGCCGATCCCTGACTTGCGCATTATGCCTCTTCGGCCGGCTCAG
64 CAGCATGCAG-GAAGAGACCAAGCCGATCCCTGGCTTGCGCATT-TGCCTCTTCGGCCGGCTGAG
* * * *
24125579 CCCCCGCACGCTCATTTCATGGGTTGACTTAA
127 CACCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
24125611 GCATACGGAGTTCATTCCCA-GCCTAAGATAGGACCAGACCGATGGTTGCAATAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATAGGACCAGACCGAGGGTTGCAATAGCAGGATCGAC
** * * * * *
24125675 AGCATGCAGGGGGAGACCGAGTCGATCCCTGGCTTGCGCATTCGACCTCTTC-GACGGCTGAGCG
65 AGCATGCAGGAAGAGACCAAGCCGATCCCTGGCTTGCGCATTTG-CCTCTTCGGCCGGCTGAGCA
*
24125739 CCCGCACGCTCGTTCCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
24125769 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
24125795 CCATATGGAG
Statistics
Matches: 274, Mismatches: 58, Indels: 22
0.77 0.16 0.06
Matches are distributed among these distances:
157 6 0.02
158 115 0.42
159 150 0.55
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATAGGACCAGACCGAGGGTTGCAATAGCAGGATCGACA
GCATGCAGGAAGAGACCAAGCCGATCCCTGGCTTGCGCATTTGCCTCTTCGGCCGGCTGAGCACC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:24127125 original size:367 final size:368
Alignment explanation
Indices: 24126466--24127178 Score: 1081
Period size: 367 Copynumber: 1.9 Consensus size: 368
24126456 TCTGGTCGGC
24126466 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCA
* * *
24126531 TGTGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGAGGCAGCAGGATCGACAACA
66 TGCGGAGTTCATTCCCAATCTAAGATCAGACCGGATCAAGGGTTGAGACAGCAGGATCGACAACA
* * * * *
24126596 CACAGAGGGGATCAAATCGATCCCCGGCTTACGCATTTTGCCTCTCCGGTCGGTTGAGCGCCCGC
131 CACAGAGGGGATCAAATCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGACCACCCGC
* * **
24126661 ATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCAAGTCTAAGCCCCAGTCGGATT
196 ACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCAAGTCTAAGCCCCAGTCGGACC
* * * * *
24126726 GAGGGTTGTGGCAGCAGGACTGGTAGCGGGATCGACAGCACGTAGAGGGGGATCGGGCTGATCCC
261 AAGGGTTGTGGCAGCAGGACCGGTAGCGGGATCGACAGCACGCAGAAGGGGACCGGGCTGATCCC
24126791 CGGCTTGCACATTATGCCTCTACGATCGGCCTCTCCAGCCGAT
326 CGGCTTGCACATTATGCCTCTACGATCGGCCTCTCCAGCCGAT
*
24126834 TGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCA
* * *
24126899 TGCGGAGTTCATT-CCAATCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGACAGCA
66 TGCGGAGTTCATTCCCAATCTAAGATCAGACCGGATCAAGGGTTGAGACAGCAGGATCGACAACA
* ** * *
24126963 CGCA-AGGGGGATCAGGTCGATCCCCGACTTGCGTATTCTGCCTCTCCGGTCGGCTGACCACCCG
131 CACAGA-GGGGATCAAATCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGACCACCCG
* *
24127027 CACGCTCATTTCTTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTC-GAG
195 CACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCAAGTCTAAGCCCCAGTCGGA-
* ** *
24127091 CCAAGGGTTGTGGTAGCAGGACCGGTAGCGGGATCGGTAGCATGCAGAAGGGGACCGGGCTGATC
259 CCAAGGGTTGTGGCAGCAGGACCGGTAGCGGGATCGACAGCACGCAGAAGGGGACCGGGCTGATC
**
24127156 CCCGGCTTGCGTATTATGCCTCT
324 CCCGGCTTGCACATTATGCCTCT
24127179 CCGACCTGCC
Statistics
Matches: 309, Mismatches: 34, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
366 3 0.01
367 230 0.74
368 76 0.25
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (368 bp):
TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCA
TGCGGAGTTCATTCCCAATCTAAGATCAGACCGGATCAAGGGTTGAGACAGCAGGATCGACAACA
CACAGAGGGGATCAAATCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGACCACCCGC
ACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCAAGTCTAAGCCCCAGTCGGACC
AAGGGTTGTGGCAGCAGGACCGGTAGCGGGATCGACAGCACGCAGAAGGGGACCGGGCTGATCCC
CGGCTTGCACATTATGCCTCTACGATCGGCCTCTCCAGCCGAT
Found at i:24127245 original size:25 final size:26
Alignment explanation
Indices: 24127209--24127258 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
24127199 GCTGACTTAG
24127209 GCATACGAAGTTCA-TCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
24127234 GCATAC-AGAGTTCATTCCCAGTCTA
1 GCATACGA-AGTTCATTCCCAGTCTA
24127259 GGATCGAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 1 0.04
25 12 0.52
26 10 0.43
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:24127714 original size:157 final size:156
Alignment explanation
Indices: 24127234--24127734 Score: 449
Period size: 159 Copynumber: 3.2 Consensus size: 156
24127224 CCCAGTCTAA
* * * * * *
24127234 GCATACAGAGTTCATTCCCA-GTCTAGGATCGAACCGAGCTG-AGGCTTGCGGCAGCAGGATCAA
1 GCATACGGAGTTCATT-CCATGTCTAAGATTGGACCGAACTGAAGG-TTGTGGCAGCAGGATCAA
* * * * *
24127297 CAACACGCAGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGTG
64 CAGCATGCA-GGGGGACCGGTC-GATCCCCGGCTTGCGCATTATGCCTCTCCGACTGGCTGAGTG
* * *
24127362 TCTGCACGCCCGTTTCATGGGTTGGCTTAG
127 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * ** * * * * *
24127392 GCACAGGGAGCTCATTCCATGCCTAAGCCCTAG-CCGGA-TCGAGGGTTGTGGCAGC-GAGACCG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATTGGACCGAACT-GAAGGTTGTGGCAGCAG-GATCA
* * * * * *
24127454 GCAGCATGCAAAGGGGGACCGGGTTGATCCCCGGCTTGCGCATTATGTCTCTTCGATTGGCTTAG
63 ACAGCATGC--AGGGGGACC-GGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACTGGCTGAG
* * * * *
24127519 CGCCCGTATGCTCGTTTCGTGGGTTGACTTATG
125 TGCCCGCACGCTCGTTTCATGGGTTGGCTTA-G
*
24127552 G-ATACGGAGTTCATTCCCA-GTCTAAGATTGGATCGAACTGAAGGTTGTGGCAGCAGGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATTGGACCGAACTGAAGGTTGTGGCAGCAGGATCAAC
* * * * *
24127615 AGCATGCAGGGGGACCAGGTCGAACCCCGACTTGCGTATTTTGCCTCTCCGACCGGCTGAGTGCC
65 AGCATGCAGGGGGACC-GGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACTGGCTGAGTGCC
*
24127680 CGCACGCTCGTTTCATAGGTTGGCTTAG
129 CGCACGCTCGTTTCATGGGTTGGCTTAG
24127708 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
24127735 CATACGGAGC
Statistics
Matches: 262, Mismatches: 66, Indels: 31
0.73 0.18 0.09
Matches are distributed among these distances:
156 5 0.02
157 94 0.36
158 41 0.16
159 112 0.43
160 10 0.04
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATTGGACCGAACTGAAGGTTGTGGCAGCAGGATCAACA
GCATGCAGGGGGACCGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACTGGCTGAGTGCCCG
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:24127758 original size:26 final size:26
Alignment explanation
Indices: 24127708--24127760 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24127698 GTTGGCTTAG
* *
24127708 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24127734 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24127760 G
1 G
24127761 ATTTTGAGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Done.